BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023006
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZUO|A Chain A, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|B Chain B, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|C Chain C, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|D Chain D, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|E Chain E, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|F Chain F, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|G Chain G, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|H Chain H, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|I Chain I, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|J Chain J, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|K Chain K, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|L Chain L, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|M Chain M, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|N Chain N, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|O Chain O, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|P Chain P, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Q Chain Q, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|R Chain R, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|S Chain S, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|T Chain T, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|U Chain U, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|V Chain V, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|W Chain W, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|X Chain X, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Y Chain Y, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Z Chain Z, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|AA Chain a, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|BB Chain b, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|CC Chain c, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|DD Chain d, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|EE Chain e, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|FF Chain f, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|GG Chain g, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|HH Chain h, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|II Chain i, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|JJ Chain j, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|KK Chain k, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|LL Chain l, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|MM Chain m, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
Length = 861
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 116 DFTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCY 171
DF D NG+ +WL +P +V+ V I +++ A R +C+
Sbjct: 128 DFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECF 183
>pdb|2PLR|A Chain A, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
pdb|2PLR|B Chain B, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
Length = 213
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 239 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPARYS 273
EWN WIH D L P++ IH +S
Sbjct: 38 EWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72
>pdb|3GF5|A Chain A, Crystal Structure Of The P21 R1-R7 N-Terminal Domain Of
Murine Mvp
pdb|3GF5|B Chain B, Crystal Structure Of The P21 R1-R7 N-Terminal Domain Of
Murine Mvp
pdb|3GNF|B Chain B, P1 Crystal Structure Of The N-Terminal R1-R7 Of Murine Mvp
pdb|3GNG|A Chain A, P21b Crystal Structure Of R1-R7 Of Murine Mvp
Length = 387
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 116 DFTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCY 171
DF D NG+ +WL +P +V+ V I +++ A R +C+
Sbjct: 132 DFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECF 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,439,341
Number of Sequences: 62578
Number of extensions: 325012
Number of successful extensions: 594
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 5
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)