BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023006
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BJZ6|CI041_RAT UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 400
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHP 269
PD+ P
Sbjct: 265 FFPDVDP 271
>sp|Q80UY1|CI041_MOUSE UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1
Length = 400
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHP 269
PD+ P
Sbjct: 265 LFPDVDP 271
>sp|Q8N4J0|CI041_HUMAN UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1
Length = 409
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CY+PI++E+ FP R S LVPGAGLGR
Sbjct: 154 DMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGR 213
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 214 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 273
Query: 263 SIPDIHP 269
PD+ P
Sbjct: 274 FFPDVDP 280
>sp|Q54ST2|U586_DICDI UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3
SV=1
Length = 463
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 6/162 (3%)
Query: 110 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 168 DQCYKPILEELDALFPN--RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225
DQ ++PI ++L ++ + + S PGAGLGRL LEI+ LGF SQG E+S+ M+I
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLI 288
Query: 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267
S+F+LN E E+ I+P+IH N L D DQLR V+IPD+
Sbjct: 289 VSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDV 330
>sp|Q9Y7J3|YOI7_SCHPO UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC1778.07 PE=3 SV=1
Length = 373
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 122 GNASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 180
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++
Sbjct: 77 ANAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNS 136
Query: 181 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGE 239
LFP+ S S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + +
Sbjct: 137 LFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQ 196
Query: 240 WNIYPWIHSNCNSLSDSDQLRPVSIPDIHPARY 272
+ +YP+IHS N + DQ+R ++IPD P++Y
Sbjct: 197 FLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQY 229
>sp|Q9I7X6|U586_DROME UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1
SV=1
Length = 439
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPACLVPG 197
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 198 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 258 QLRPVSIPDIHPAR 271
Q+ PV PD+ P +
Sbjct: 239 QVAPVRFPDVCPLK 252
>sp|P53934|YNJ2_YEAST UPF0586 protein YNL092W OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YNL092W PE=1 SV=1
Length = 400
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPAC--LVPGAGLG 201
D+ K ++ + R+W+AE +ER+ C L P SPP L+PG G G
Sbjct: 98 DMSKTCSLLTQVYREWSAEAISERN-CLN------SRLVPFLKTLSPPKADILIPGCGTG 150
Query: 202 RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261
RL +++S +G+ +GNEFSY+M++ S ++LN + IYP+IH + DQL P
Sbjct: 151 RLLVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSP 210
Query: 262 VSIPDI 267
+ +PDI
Sbjct: 211 IKVPDI 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,877,976
Number of Sequences: 539616
Number of extensions: 4631669
Number of successful extensions: 11324
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 11201
Number of HSP's gapped (non-prelim): 125
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)