Query 023006
Match_columns 289
No_of_seqs 140 out of 278
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07942 N2227: N2227-like pro 100.0 9.9E-52 2.2E-56 382.3 12.5 136 130-271 2-138 (270)
2 KOG2798 Putative trehalase [Ca 100.0 1.7E-49 3.6E-54 375.8 10.8 156 104-270 74-231 (369)
3 PRK13256 thiopurine S-methyltr 97.8 1.9E-05 4E-10 72.4 4.0 50 172-225 30-79 (226)
4 PRK13255 thiopurine S-methyltr 97.8 2.2E-05 4.7E-10 70.7 4.1 52 170-225 22-73 (218)
5 TIGR03840 TMPT_Se_Te thiopurin 97.7 6.5E-05 1.4E-09 67.4 5.9 36 190-225 35-70 (213)
6 PF05724 TPMT: Thiopurine S-me 97.7 1.8E-05 3.9E-10 71.4 1.6 50 172-225 24-73 (218)
7 TIGR00477 tehB tellurite resis 97.1 0.00052 1.1E-08 59.9 3.9 38 190-227 31-68 (195)
8 PRK11207 tellurite resistance 97.1 0.00041 8.9E-09 60.6 3.2 39 190-228 31-69 (197)
9 PF12847 Methyltransf_18: Meth 96.8 0.0055 1.2E-07 47.1 7.0 42 190-231 2-45 (112)
10 PRK10258 biotin biosynthesis p 96.5 0.0084 1.8E-07 53.4 7.1 77 144-228 5-81 (251)
11 PF13659 Methyltransf_26: Meth 96.4 0.011 2.5E-07 45.8 6.3 43 191-233 2-45 (117)
12 PRK11036 putative S-adenosyl-L 96.1 0.037 8E-07 49.9 8.9 41 189-229 44-84 (255)
13 PF13489 Methyltransf_23: Meth 95.9 0.015 3.2E-07 46.8 5.1 52 173-226 8-59 (161)
14 PRK12335 tellurite resistance 95.9 0.012 2.7E-07 54.2 5.0 37 191-227 122-158 (287)
15 PRK07580 Mg-protoporphyrin IX 95.7 0.026 5.7E-07 48.9 6.1 40 189-228 63-102 (230)
16 PF03848 TehB: Tellurite resis 95.6 0.021 4.5E-07 51.5 5.3 42 189-230 30-72 (192)
17 TIGR02021 BchM-ChlM magnesium 95.6 0.088 1.9E-06 46.1 8.9 58 167-229 38-95 (219)
18 PLN02585 magnesium protoporphy 95.4 0.027 5.7E-07 53.9 5.6 39 189-227 144-182 (315)
19 PRK14967 putative methyltransf 94.7 0.061 1.3E-06 47.6 5.4 39 189-227 36-75 (223)
20 TIGR00740 methyltransferase, p 94.3 0.16 3.4E-06 45.2 6.9 42 189-230 53-98 (239)
21 PRK14968 putative methyltransf 94.1 0.072 1.6E-06 44.4 4.2 39 189-227 23-61 (188)
22 PLN02244 tocopherol O-methyltr 94.0 0.39 8.5E-06 45.8 9.6 58 173-230 100-160 (340)
23 TIGR03587 Pse_Me-ase pseudamin 94.0 0.12 2.7E-06 45.9 5.8 39 190-228 44-84 (204)
24 PF13847 Methyltransf_31: Meth 93.9 0.23 5E-06 41.0 6.8 45 189-233 3-50 (152)
25 PRK00517 prmA ribosomal protei 93.8 0.16 3.4E-06 46.1 6.1 56 173-233 108-166 (250)
26 PRK01683 trans-aconitate 2-met 93.6 0.16 3.4E-06 45.4 5.8 40 189-228 31-72 (258)
27 PRK00216 ubiE ubiquinone/menaq 93.5 0.4 8.7E-06 41.2 7.9 40 189-228 51-93 (239)
28 TIGR02469 CbiT precorrin-6Y C5 93.5 0.29 6.2E-06 37.7 6.3 40 190-229 20-61 (124)
29 TIGR00406 prmA ribosomal prote 93.4 0.36 7.8E-06 44.9 8.0 51 173-228 148-199 (288)
30 PRK14103 trans-aconitate 2-met 93.4 0.17 3.6E-06 45.6 5.6 39 189-227 29-69 (255)
31 TIGR00452 methyltransferase, p 93.0 0.54 1.2E-05 45.2 8.7 80 143-227 73-160 (314)
32 smart00650 rADc Ribosomal RNA 93.0 0.2 4.3E-06 42.4 5.2 40 189-228 13-52 (169)
33 PRK04148 hypothetical protein; 93.0 0.18 3.9E-06 43.4 4.9 48 173-223 3-51 (134)
34 PF08241 Methyltransf_11: Meth 92.9 0.14 3E-06 37.3 3.6 39 194-232 1-40 (95)
35 PRK00274 ksgA 16S ribosomal RN 92.9 0.3 6.6E-06 45.0 6.6 53 173-228 29-81 (272)
36 TIGR02072 BioC biotin biosynth 92.9 0.3 6.5E-06 41.8 6.1 40 189-228 34-75 (240)
37 PLN02233 ubiquinone biosynthes 92.3 0.58 1.3E-05 42.9 7.6 82 143-227 26-114 (261)
38 TIGR01177 conserved hypothetic 92.2 0.39 8.4E-06 45.3 6.5 44 189-232 182-225 (329)
39 PLN02396 hexaprenyldihydroxybe 92.0 0.61 1.3E-05 44.9 7.7 56 173-228 111-170 (322)
40 PRK05785 hypothetical protein; 91.9 0.4 8.8E-06 43.1 6.0 51 173-228 40-91 (226)
41 PRK15451 tRNA cmo(5)U34 methyl 91.9 0.61 1.3E-05 42.1 7.2 40 189-228 56-99 (247)
42 PRK15068 tRNA mo(5)U34 methylt 91.7 0.5 1.1E-05 45.0 6.7 41 190-230 123-164 (322)
43 TIGR01983 UbiG ubiquinone bios 91.4 0.96 2.1E-05 39.1 7.6 40 189-228 45-84 (224)
44 COG2227 UbiG 2-polyprenyl-3-me 91.4 0.19 4.2E-06 47.3 3.5 80 146-227 17-97 (243)
45 TIGR03534 RF_mod_PrmC protein- 91.4 0.55 1.2E-05 41.1 6.1 42 190-231 88-131 (251)
46 TIGR00537 hemK_rel_arch HemK-r 91.3 0.39 8.4E-06 40.9 5.0 39 190-228 20-58 (179)
47 TIGR03438 probable methyltrans 91.3 0.61 1.3E-05 43.6 6.7 94 147-249 26-124 (301)
48 PRK14896 ksgA 16S ribosomal RN 91.2 0.51 1.1E-05 43.1 6.0 52 174-228 17-68 (258)
49 PRK00121 trmB tRNA (guanine-N( 91.0 0.2 4.3E-06 44.1 3.0 51 174-228 29-81 (202)
50 PRK03522 rumB 23S rRNA methylu 90.8 0.59 1.3E-05 43.9 6.2 39 190-228 174-212 (315)
51 PRK11088 rrmA 23S rRNA methylt 90.5 0.48 1E-05 43.3 5.1 39 189-227 85-128 (272)
52 PRK05134 bifunctional 3-demeth 90.4 1.9 4.1E-05 37.8 8.6 51 174-227 36-86 (233)
53 PLN02336 phosphoethanolamine N 89.9 0.59 1.3E-05 45.8 5.5 38 190-227 38-75 (475)
54 KOG1271 Methyltransferases [Ge 89.5 1.1 2.4E-05 41.7 6.6 74 159-238 42-118 (227)
55 PF13649 Methyltransf_25: Meth 89.0 0.53 1.1E-05 36.2 3.6 35 193-227 1-40 (101)
56 PTZ00098 phosphoethanolamine N 88.9 0.89 1.9E-05 41.8 5.6 40 189-228 52-92 (263)
57 PRK11705 cyclopropane fatty ac 88.8 1.2 2.5E-05 43.7 6.6 40 189-228 167-207 (383)
58 cd02440 AdoMet_MTases S-adenos 88.7 0.72 1.6E-05 32.5 3.9 37 192-228 1-38 (107)
59 PF08242 Methyltransf_12: Meth 87.7 0.11 2.5E-06 39.4 -0.8 28 197-224 4-33 (99)
60 PRK10742 putative methyltransf 87.5 0.71 1.5E-05 43.6 4.1 57 173-234 77-133 (250)
61 smart00138 MeTrc Methyltransfe 86.9 1.6 3.4E-05 40.4 5.9 40 189-228 99-149 (264)
62 TIGR03533 L3_gln_methyl protei 86.5 3.5 7.5E-05 38.6 8.0 41 190-230 122-164 (284)
63 PRK00107 gidB 16S rRNA methylt 86.4 5.5 0.00012 35.3 8.9 39 190-228 46-86 (187)
64 PRK06202 hypothetical protein; 86.2 6.3 0.00014 34.9 9.2 40 189-228 60-105 (232)
65 TIGR02752 MenG_heptapren 2-hep 86.1 3.2 7E-05 36.2 7.2 40 189-228 45-87 (231)
66 TIGR00138 gidB 16S rRNA methyl 85.6 4.3 9.2E-05 35.5 7.7 38 190-227 43-82 (181)
67 PF02353 CMAS: Mycolic acid cy 85.3 6.5 0.00014 36.9 9.2 52 173-227 49-101 (273)
68 PF05175 MTS: Methyltransferas 85.1 7.2 0.00016 33.2 8.7 52 172-230 21-74 (170)
69 PRK07402 precorrin-6B methylas 85.0 3.8 8.2E-05 35.4 7.0 40 189-228 40-81 (196)
70 TIGR00479 rumA 23S rRNA (uraci 84.8 2.9 6.3E-05 40.8 6.9 54 172-228 278-331 (431)
71 PRK00312 pcm protein-L-isoaspa 84.7 3.6 7.8E-05 35.9 6.8 40 189-228 78-117 (212)
72 TIGR00755 ksgA dimethyladenosi 84.5 2.7 5.8E-05 38.1 6.1 54 174-230 17-70 (253)
73 KOG1270 Methyltransferases [Co 84.4 4.1 8.9E-05 39.4 7.5 86 144-229 35-129 (282)
74 PF05185 PRMT5: PRMT5 arginine 83.7 2.8 6.1E-05 42.2 6.5 80 164-243 159-246 (448)
75 smart00828 PKS_MT Methyltransf 83.6 3.6 7.7E-05 35.8 6.3 37 192-228 2-40 (224)
76 PRK09328 N5-glutamine S-adenos 83.4 3.9 8.4E-05 36.6 6.6 43 189-231 108-152 (275)
77 TIGR02081 metW methionine bios 82.8 2.9 6.3E-05 36.1 5.4 48 175-227 4-52 (194)
78 TIGR00080 pimt protein-L-isoas 81.6 4 8.7E-05 35.9 5.9 55 174-231 65-122 (215)
79 PRK11805 N5-glutamine S-adenos 81.1 7.1 0.00015 37.1 7.8 41 191-231 135-177 (307)
80 TIGR00091 tRNA (guanine-N(7)-) 80.7 3.1 6.7E-05 36.2 4.9 39 189-227 16-56 (194)
81 PRK00811 spermidine synthase; 80.1 3.5 7.7E-05 38.5 5.3 42 189-230 76-120 (283)
82 PRK08317 hypothetical protein; 79.7 7.9 0.00017 32.9 6.9 40 189-228 19-61 (241)
83 TIGR03704 PrmC_rel_meth putati 79.1 6.2 0.00013 36.3 6.5 42 190-231 87-130 (251)
84 PHA03411 putative methyltransf 78.3 3.9 8.4E-05 39.3 5.1 41 190-230 65-107 (279)
85 PRK00377 cbiT cobalt-precorrin 78.0 8.7 0.00019 33.4 6.8 40 189-228 40-82 (198)
86 PRK08287 cobalt-precorrin-6Y C 78.0 4.8 0.0001 34.4 5.2 39 189-227 31-71 (187)
87 TIGR02085 meth_trns_rumB 23S r 77.9 6.7 0.00015 38.1 6.7 40 191-230 235-274 (374)
88 TIGR00536 hemK_fam HemK family 76.7 12 0.00027 34.6 7.8 40 191-230 116-157 (284)
89 PRK13168 rumA 23S rRNA m(5)U19 76.7 6.1 0.00013 39.0 6.1 43 189-231 297-339 (443)
90 PRK11873 arsM arsenite S-adeno 75.6 4.4 9.5E-05 36.7 4.4 42 189-230 77-121 (272)
91 PTZ00338 dimethyladenosine tra 75.5 18 0.00038 34.4 8.6 52 174-228 24-75 (294)
92 TIGR01934 MenG_MenH_UbiE ubiqu 74.4 6.4 0.00014 33.4 4.9 40 189-228 39-81 (223)
93 PRK13944 protein-L-isoaspartat 74.2 25 0.00054 31.0 8.7 51 174-227 60-113 (205)
94 PF02384 N6_Mtase: N-6 DNA Met 73.8 8.6 0.00019 35.5 6.0 52 173-227 33-93 (311)
95 PHA03412 putative methyltransf 73.7 5.3 0.00012 37.7 4.6 41 190-230 50-95 (241)
96 PF06080 DUF938: Protein of un 72.3 5.6 0.00012 36.6 4.3 54 164-223 6-61 (204)
97 PRK15001 SAM-dependent 23S rib 71.5 9.3 0.0002 37.8 6.0 49 178-229 220-270 (378)
98 PLN02336 phosphoethanolamine N 71.3 6.7 0.00015 38.5 4.9 39 189-227 266-305 (475)
99 COG0500 SmtA SAM-dependent met 70.6 21 0.00045 25.0 6.0 34 193-226 52-87 (257)
100 PRK01544 bifunctional N5-gluta 69.8 22 0.00047 36.3 8.2 39 190-228 139-179 (506)
101 TIGR00438 rrmJ cell division p 69.5 8.1 0.00018 33.1 4.5 44 178-223 23-69 (188)
102 PF01209 Ubie_methyltran: ubiE 69.1 6.1 0.00013 36.1 3.9 42 189-230 47-91 (233)
103 COG2226 UbiE Methylase involve 69.1 8.9 0.00019 35.9 4.9 43 189-231 51-95 (238)
104 TIGR00417 speE spermidine synt 68.7 12 0.00026 34.4 5.8 54 170-227 57-112 (270)
105 TIGR00095 RNA methyltransferas 68.1 18 0.00039 31.9 6.5 43 191-233 51-96 (189)
106 PRK06922 hypothetical protein; 67.5 7.1 0.00015 41.8 4.4 39 190-228 419-459 (677)
107 PF08123 DOT1: Histone methyla 66.0 4.4 9.4E-05 36.8 2.2 38 190-227 43-82 (205)
108 PHA02595 tk.4 hypothetical pro 65.5 8.1 0.00017 33.3 3.7 20 191-210 114-135 (154)
109 COG2263 Predicted RNA methylas 63.0 16 0.00034 33.9 5.2 44 189-232 45-89 (198)
110 PRK13943 protein-L-isoaspartat 62.9 23 0.0005 34.2 6.6 41 189-229 80-123 (322)
111 PLN02490 MPBQ/MSBQ methyltrans 61.9 14 0.00031 36.1 5.1 39 189-227 113-153 (340)
112 PF01739 CheR: CheR methyltran 60.8 20 0.00043 32.3 5.4 40 188-227 30-80 (196)
113 PRK14966 unknown domain/N5-glu 60.6 20 0.00043 36.4 5.9 42 190-231 252-295 (423)
114 PRK09489 rsmC 16S ribosomal RN 59.4 24 0.00052 34.2 6.1 42 191-232 198-241 (342)
115 TIGR02987 met_A_Alw26 type II 58.1 23 0.00051 35.6 6.0 43 189-231 31-83 (524)
116 PF04445 SAM_MT: Putative SAM- 57.2 14 0.0003 34.8 3.9 44 190-233 76-119 (234)
117 PRK04266 fibrillarin; Provisio 57.1 23 0.0005 32.3 5.3 63 155-225 46-110 (226)
118 PF06325 PrmA: Ribosomal prote 56.6 42 0.00091 32.2 7.1 64 172-242 149-215 (295)
119 cd02901 Macro_Poa1p_like Macro 56.4 5.4 0.00012 32.8 1.0 18 192-209 111-130 (140)
120 PRK10909 rsmD 16S rRNA m(2)G96 54.7 40 0.00087 30.3 6.3 36 191-226 55-91 (199)
121 cd01080 NAD_bind_m-THF_DH_Cycl 54.7 23 0.00051 31.1 4.7 40 174-216 31-73 (168)
122 KOG1209 1-Acyl dihydroxyaceton 53.2 13 0.00029 35.7 3.1 28 189-216 6-37 (289)
123 KOG2872 Uroporphyrinogen decar 52.3 26 0.00057 34.8 5.0 81 152-233 209-294 (359)
124 PRK14121 tRNA (guanine-N(7)-)- 51.4 35 0.00077 34.2 5.9 82 142-226 68-161 (390)
125 TIGR01444 fkbM_fam methyltrans 51.1 49 0.0011 26.4 5.8 52 194-248 3-58 (143)
126 PF02475 Met_10: Met-10+ like- 50.7 51 0.0011 29.9 6.4 88 159-264 84-175 (200)
127 PRK05355 3-phosphoserine/phosp 50.7 37 0.0008 32.6 5.8 75 146-224 16-107 (360)
128 KOG4058 Uncharacterized conser 50.6 17 0.00037 33.2 3.2 42 189-230 72-114 (199)
129 PRK13942 protein-L-isoaspartat 49.4 66 0.0014 28.6 6.8 57 172-231 62-121 (212)
130 PLN02366 spermidine synthase 49.4 40 0.00086 32.4 5.8 42 189-230 91-135 (308)
131 PRK04457 spermidine synthase; 49.1 57 0.0012 30.2 6.6 38 190-227 67-106 (262)
132 PRK11783 rlmL 23S rRNA m(2)G24 47.5 35 0.00075 36.2 5.5 45 190-234 539-586 (702)
133 COG2264 PrmA Ribosomal protein 46.6 63 0.0014 31.5 6.7 58 172-234 150-210 (300)
134 PF01661 Macro: Macro domain; 45.9 35 0.00075 26.4 4.0 34 169-209 80-115 (118)
135 PRK05031 tRNA (uracil-5-)-meth 45.6 58 0.0012 31.6 6.3 39 191-229 208-246 (362)
136 TIGR00478 tly hemolysin TlyA f 44.6 64 0.0014 29.8 6.1 38 189-226 75-113 (228)
137 COG3349 Uncharacterized conser 44.3 20 0.00044 37.1 3.0 26 191-216 1-28 (485)
138 COG0030 KsgA Dimethyladenosine 43.3 65 0.0014 30.7 6.1 40 189-228 30-69 (259)
139 PF00398 RrnaAD: Ribosomal RNA 41.2 51 0.0011 30.3 4.9 35 189-223 30-64 (262)
140 COG4123 Predicted O-methyltran 40.6 65 0.0014 30.6 5.6 54 189-242 44-99 (248)
141 PF05401 NodS: Nodulation prot 40.4 24 0.00051 32.7 2.6 42 191-232 45-86 (201)
142 PRK10611 chemotaxis methyltran 40.2 47 0.001 31.8 4.7 39 189-227 115-163 (287)
143 PTZ00146 fibrillarin; Provisio 39.5 62 0.0014 31.4 5.4 62 155-224 106-170 (293)
144 TIGR02143 trmA_only tRNA (urac 39.3 74 0.0016 30.8 5.9 42 192-233 200-243 (353)
145 smart00506 A1pp Appr-1"-p proc 38.1 20 0.00043 28.5 1.6 21 189-209 108-130 (133)
146 TIGR02733 desat_CrtD C-3',4' d 37.6 33 0.00072 33.7 3.3 28 191-218 2-31 (492)
147 KOG2940 Predicted methyltransf 37.4 27 0.00059 34.0 2.6 75 151-228 34-112 (325)
148 PF13679 Methyltransf_32: Meth 36.8 1.1E+02 0.0024 25.3 5.8 39 188-226 24-68 (141)
149 COG2230 Cfa Cyclopropane fatty 36.1 88 0.0019 30.3 5.8 53 174-229 60-113 (283)
150 PF08149 BING4CT: BING4CT (NUC 35.7 18 0.00039 29.2 1.0 13 189-201 31-43 (80)
151 COG4106 Tam Trans-aconitate me 35.6 63 0.0014 31.0 4.6 69 158-233 2-76 (257)
152 KOG2361 Predicted methyltransf 35.5 30 0.00065 33.3 2.6 95 147-250 27-132 (264)
153 COG0075 Serine-pyruvate aminot 35.1 75 0.0016 32.0 5.3 53 151-208 20-72 (383)
154 PF02086 MethyltransfD12: D12 35.1 69 0.0015 28.3 4.7 56 174-232 8-63 (260)
155 TIGR01316 gltA glutamate synth 34.8 42 0.00091 33.1 3.6 31 189-219 132-164 (449)
156 PRK10901 16S rRNA methyltransf 33.7 61 0.0013 32.0 4.5 44 189-232 244-289 (427)
157 KOG2352 Predicted spermine/spe 33.4 73 0.0016 33.2 5.1 35 191-225 50-85 (482)
158 COG1064 AdhP Zn-dependent alco 33.0 50 0.0011 32.7 3.7 35 188-222 165-201 (339)
159 PF11528 DUF3224: Protein of u 32.4 15 0.00034 31.5 0.1 13 192-204 96-108 (134)
160 TIGR00521 coaBC_dfp phosphopan 32.2 73 0.0016 31.7 4.7 47 170-216 165-230 (390)
161 COG1352 CheR Methylase of chem 31.7 91 0.002 29.7 5.1 38 189-226 96-144 (268)
162 PRK07233 hypothetical protein; 31.4 42 0.00091 31.5 2.8 24 192-215 1-26 (434)
163 PRK03612 spermidine synthase; 31.1 82 0.0018 32.2 5.0 40 189-228 297-338 (521)
164 KOG1499 Protein arginine N-met 31.0 2E+02 0.0043 28.9 7.4 62 167-234 44-106 (346)
165 PF07021 MetW: Methionine bios 30.8 97 0.0021 28.5 4.9 37 189-225 13-50 (193)
166 PRK07806 short chain dehydroge 30.5 60 0.0013 28.0 3.4 27 190-216 6-35 (248)
167 KOG0822 Protein kinase inhibit 29.7 43 0.00093 35.7 2.7 58 172-229 350-416 (649)
168 COG1041 Predicted DNA modifica 29.2 63 0.0014 32.2 3.7 46 188-233 196-241 (347)
169 PLN02529 lysine-specific histo 28.6 62 0.0013 35.0 3.8 32 189-220 159-192 (738)
170 COG1231 Monoamine oxidase [Ami 28.6 55 0.0012 33.8 3.2 33 188-220 5-39 (450)
171 PRK07984 enoyl-(acyl carrier p 28.5 56 0.0012 29.5 3.0 28 191-218 7-39 (262)
172 PRK01581 speE spermidine synth 28.4 97 0.0021 31.2 4.9 40 189-228 150-191 (374)
173 PF02636 Methyltransf_28: Puta 28.3 65 0.0014 29.3 3.4 57 173-232 5-71 (252)
174 PF02390 Methyltransf_4: Putat 28.2 71 0.0015 28.4 3.5 34 191-224 19-54 (195)
175 PF10825 DUF2752: Protein of u 28.0 34 0.00073 24.8 1.2 33 192-224 9-43 (52)
176 PF09243 Rsm22: Mitochondrial 28.0 2.4E+02 0.0052 26.3 7.2 60 172-234 19-81 (274)
177 KOG1201 Hydroxysteroid 17-beta 27.8 1.3E+02 0.0028 29.6 5.5 44 171-214 18-65 (300)
178 PF10686 DUF2493: Protein of u 27.4 1.3E+02 0.0029 23.0 4.5 25 191-215 34-61 (71)
179 PRK07577 short chain dehydroge 26.7 77 0.0017 27.0 3.4 26 191-216 4-32 (234)
180 PLN02781 Probable caffeoyl-CoA 26.1 2.4E+02 0.0053 25.6 6.7 49 173-227 58-109 (234)
181 COG1587 HemD Uroporphyrinogen- 26.0 2.8E+02 0.006 25.2 7.0 60 146-216 87-151 (248)
182 PLN02672 methionine S-methyltr 25.7 98 0.0021 35.2 4.8 37 191-227 120-158 (1082)
183 PF08759 DUF1792: Domain of un 25.7 1.1E+02 0.0023 29.0 4.3 82 128-215 80-194 (225)
184 COG1233 Phytoene dehydrogenase 24.8 77 0.0017 31.8 3.5 29 190-218 3-33 (487)
185 PRK07208 hypothetical protein; 24.3 74 0.0016 31.0 3.2 29 190-218 4-34 (479)
186 PRK05855 short chain dehydroge 24.2 1.8E+02 0.004 28.2 5.8 68 143-218 276-346 (582)
187 PRK05884 short chain dehydroge 24.1 58 0.0013 28.4 2.2 26 192-217 2-30 (223)
188 PRK12823 benD 1,6-dihydroxycyc 24.0 97 0.0021 27.0 3.6 31 190-220 8-41 (260)
189 PRK07231 fabG 3-ketoacyl-(acyl 23.9 91 0.002 26.7 3.3 30 191-220 6-38 (251)
190 PRK12742 oxidoreductase; Provi 23.9 80 0.0017 26.9 3.0 25 191-215 7-34 (237)
191 PRK05786 fabG 3-ketoacyl-(acyl 23.9 96 0.0021 26.5 3.5 26 191-217 6-35 (238)
192 PRK15128 23S rRNA m(5)C1962 me 23.8 1E+02 0.0023 30.6 4.2 46 189-234 220-268 (396)
193 COG0773 MurC UDP-N-acetylmuram 23.8 48 0.001 34.2 1.8 38 195-234 15-52 (459)
194 TIGR03439 methyl_EasF probable 23.7 5.7E+02 0.012 24.9 9.0 97 148-252 40-144 (319)
195 PRK12827 short chain dehydroge 23.6 93 0.002 26.5 3.3 26 191-216 7-35 (249)
196 PRK06125 short chain dehydroge 23.5 92 0.002 27.3 3.4 31 190-220 7-40 (259)
197 PRK06523 short chain dehydroge 23.4 1.3E+02 0.0028 26.2 4.3 28 189-216 8-38 (260)
198 PRK07063 short chain dehydroge 23.3 80 0.0017 27.6 2.9 29 190-218 7-38 (260)
199 TIGR01988 Ubi-OHases Ubiquinon 23.2 74 0.0016 29.3 2.8 28 193-220 2-31 (385)
200 PRK07236 hypothetical protein; 22.3 94 0.002 29.4 3.4 32 189-220 5-38 (386)
201 PF06580 His_kinase: Histidine 22.2 55 0.0012 25.2 1.5 10 2-11 10-19 (82)
202 PRK14904 16S rRNA methyltransf 21.9 1.3E+02 0.0029 29.8 4.5 43 189-231 250-295 (445)
203 cd03330 Macro_2 Macro domain, 21.8 1.5E+02 0.0033 24.2 4.1 19 191-209 105-125 (133)
204 PRK06500 short chain dehydroge 21.7 1.1E+02 0.0023 26.3 3.3 28 191-218 7-37 (249)
205 PF01266 DAO: FAD dependent ox 21.5 1E+02 0.0022 27.5 3.2 28 193-220 2-31 (358)
206 PRK05714 2-octaprenyl-3-methyl 21.4 87 0.0019 29.7 3.0 29 191-219 3-33 (405)
207 TIGR02716 C20_methyl_CrtF C-20 21.1 3.4E+02 0.0074 25.1 6.8 35 189-224 149-185 (306)
208 TIGR00031 UDP-GALP_mutase UDP- 21.0 88 0.0019 30.9 3.0 28 192-219 3-32 (377)
209 PLN02823 spermine synthase 20.9 2.3E+02 0.0049 27.7 5.8 42 189-230 103-147 (336)
210 PRK06567 putative bifunctional 20.8 1.2E+02 0.0026 34.4 4.2 31 188-218 381-413 (1028)
211 PRK05579 bifunctional phosphop 20.7 1.5E+02 0.0034 29.5 4.7 47 168-215 167-232 (399)
212 PF01170 UPF0020: Putative RNA 20.7 1.9E+02 0.0041 25.2 4.7 46 189-234 28-84 (179)
213 PF08915 tRNA-Thr_ED: Archaea- 20.4 74 0.0016 28.0 2.1 22 235-256 70-91 (138)
214 PRK04338 N(2),N(2)-dimethylgua 20.4 3.9E+02 0.0085 26.5 7.3 45 190-234 58-106 (382)
215 PRK12859 3-ketoacyl-(acyl-carr 20.3 1E+02 0.0022 27.1 3.0 27 190-216 6-37 (256)
216 PRK07985 oxidoreductase; Provi 20.3 75 0.0016 29.1 2.2 27 190-216 49-78 (294)
217 PRK08339 short chain dehydroge 20.0 1.3E+02 0.0028 26.9 3.6 31 190-220 8-41 (263)
No 1
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=100.00 E-value=9.9e-52 Score=382.26 Aligned_cols=136 Identities=54% Similarity=1.039 Sum_probs=128.8
Q ss_pred CCCCCcccCCCCCCchHHHHHHHhhhhhcCCcCChHHHhhhhHHHHHHHHhhCCC-CCCCCCCeEEecCCCchhhHHHHH
Q 023006 130 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEIS 208 (289)
Q Consensus 130 ~w~~ps~~~~v~~~D~dKV~stLkq~vRDWS~EG~~ERd~~y~PILe~L~~~fP~-~~~r~~~rVLVPGsGLGRLA~EIA 208 (289)
+|..++. .|++||+++|+||+||||+||+.||+++|+||+++|++++|. ...+++++||||||||||||||||
T Consensus 2 ~~~~~~~------~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 2 EWVHPSP------SDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred CcccCch------hhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHh
Confidence 4555554 999999999999999999999999999999999999999995 455789999999999999999999
Q ss_pred hhCCeeeeechhHHHHHHHHHHhhccCCCCceEEeecccccCCcCCccCCccceecCCCCCCC
Q 023006 209 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAR 271 (289)
Q Consensus 209 ~~Gf~vqgNEfSy~MLLaS~FILN~~~~~~~~tIyPFihs~SN~~s~edQLR~V~IPDv~P~~ 271 (289)
++||.||||||||+||++|+||||++.+.++++||||+|++||+.++++|||+|+|||+.|..
T Consensus 76 ~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~ 138 (270)
T PF07942_consen 76 KLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSS 138 (270)
T ss_pred hccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCccc
Confidence 999999999999999999999999999999999999999999999999999999999999976
No 2
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=375.80 Aligned_cols=156 Identities=51% Similarity=0.901 Sum_probs=141.4
Q ss_pred cchhhhhccccccccccCCCCCCCCCCCCCCc-ccCCCCCCchHHHHHHHhhhhhcCCcCChHHHhhhhHHHHHHHHhhC
Q 023006 104 ENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALF 182 (289)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ps-~~~~v~~~D~dKV~stLkq~vRDWS~EG~~ERd~~y~PILe~L~~~f 182 (289)
++.+++++-+...+..++ .-+ ...+|.+.+|.||.++|+|++||||+||..||+++|+|||++|..+|
T Consensus 74 ~v~r~Ia~~~~~~f~ed~-----------~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~lf 142 (369)
T KOG2798|consen 74 RVIRAIAEECPFEFTEDH-----------DQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSLF 142 (369)
T ss_pred HHHHHHHhhCccccchhh-----------hcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhhC
Confidence 456667665555554433 333 56778889999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhhccCCCCceEEeecccccCCcCCccCCccc
Q 023006 183 PNR-SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (289)
Q Consensus 183 P~~-~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN~~~~~~~~tIyPFihs~SN~~s~edQLR~ 261 (289)
|.+ ..|.+++||||||||||||+|||++||.+|||||||||||||.||||.+..+++|+||||||++||+++++|||||
T Consensus 143 p~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrp 222 (369)
T KOG2798|consen 143 PSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRP 222 (369)
T ss_pred CCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccc
Confidence 975 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 023006 262 VSIPDIHPA 270 (289)
Q Consensus 262 V~IPDv~P~ 270 (289)
|+|||++|.
T Consensus 223 i~~PD~~p~ 231 (369)
T KOG2798|consen 223 ISIPDIHPA 231 (369)
T ss_pred ccCcccccc
Confidence 999999998
No 3
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.80 E-value=1.9e-05 Score=72.37 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHH
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLL 225 (289)
..+.+.+.++-+. ...+|||||||.||-+.-||.+||.|.|.|+|-.-+-
T Consensus 30 p~L~~~~~~l~~~----~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~ 79 (226)
T PRK13256 30 EFLVKHFSKLNIN----DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVL 79 (226)
T ss_pred HHHHHHHHhcCCC----CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHH
Confidence 4455666664322 3459999999999999999999999999999987654
No 4
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.78 E-value=2.2e-05 Score=70.66 Aligned_cols=52 Identities=21% Similarity=0.098 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHH
Q 023006 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (289)
Q Consensus 170 ~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLL 225 (289)
....+.+.+.+..+ ....+||+||||.||-+.-||.+||.|+|.|+|--.+-
T Consensus 22 p~~~L~~~~~~~~~----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~ 73 (218)
T PRK13255 22 VNPLLQKYWPALAL----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVE 73 (218)
T ss_pred CCHHHHHHHHhhCC----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHH
Confidence 44566666655322 12459999999999999999999999999999987665
No 5
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.71 E-value=6.5e-05 Score=67.38 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLL 225 (289)
.-+||+||||.||-|.-||.+||.|+|.|+|--++-
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~ 70 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE 70 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH
Confidence 359999999999999999999999999999999887
No 6
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.66 E-value=1.8e-05 Score=71.44 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHH
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLL 225 (289)
..+.+.+.+. + ...+.+|||||||.|.-+.-||.+||.|.|.|+|-.-+-
T Consensus 24 p~L~~~~~~l-~---~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~ 73 (218)
T PF05724_consen 24 PALVEYLDSL-A---LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIE 73 (218)
T ss_dssp HHHHHHHHHH-T---TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHH
T ss_pred HHHHHHHHhc-C---CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHH
Confidence 4555555552 1 124568999999999999999999999999999987654
No 7
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.09 E-value=0.00052 Score=59.89 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
+.+||-.|||.|+++..+|++|+.|.|.|.|--|+-..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a 68 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASV 68 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 45899999999999999999999999999999888644
No 8
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.09 E-value=0.00041 Score=60.61 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=35.0
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+.+||-.|||.|+++..||++|+.|.|.|.|--|+-..+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLE 69 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999975443
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.80 E-value=0.0055 Score=47.05 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=36.6
Q ss_pred CCeEEecCCCchhhHHHHHh--hCCeeeeechhHHHHHHHHHHh
Q 023006 190 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~--~Gf~vqgNEfSy~MLLaS~FIL 231 (289)
..+||--|||.|+++.++++ .|..+.|.|.|--|+-..+=..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 45899999999999999999 6999999999999986555444
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.51 E-value=0.0084 Score=53.41 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=55.4
Q ss_pred chHHHHHHHhhhhhcCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHH
Q 023006 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 223 (289)
Q Consensus 144 D~dKV~stLkq~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~M 223 (289)
|..+|.......+..|... ......+.+.|.+.++.. ...+||-.|||.|+++..++..|..+.++|.|--|
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~-----~~~q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~ 76 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQH-----AELQRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM 76 (251)
T ss_pred CHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence 3455665555555555432 123456777777776642 45689999999999999999999999999999999
Q ss_pred HHHHH
Q 023006 224 MICSS 228 (289)
Q Consensus 224 LLaS~ 228 (289)
+-..+
T Consensus 77 l~~a~ 81 (251)
T PRK10258 77 LAQAR 81 (251)
T ss_pred HHHHH
Confidence 86543
No 11
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.38 E-value=0.011 Score=45.79 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=37.6
Q ss_pred CeEEecCCCchhhHHHHHhhC-CeeeeechhHHHHHHHHHHhhc
Q 023006 191 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNH 233 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~G-f~vqgNEfSy~MLLaS~FILN~ 233 (289)
.+||-||||.|+++..++++| ..+.|.|.+-..+-..+..+..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999999999 8889999999987777665554
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.09 E-value=0.037 Score=49.85 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=36.6
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~F 229 (289)
.+.+||-.|||.|+++..+|++|..+.|.|.|--|+-..+-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 35699999999999999999999999999999999876543
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.92 E-value=0.015 Score=46.76 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLa 226 (289)
.+.+.|+++.+. .....+||==|||.|+++..+++.|+.+.|.|.|--|+-.
T Consensus 8 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 8 AYADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp CHHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 344555554432 2356799999999999999999999999999999998865
No 14
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.87 E-value=0.012 Score=54.20 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred CeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
.+||--|||.||++..+|++|+.+.|.|.|--|+-..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~ 158 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENL 158 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3899999999999999999999999999999987643
No 15
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.71 E-value=0.026 Score=48.88 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||--|||.|+++..+++.|..+.|.|.|--|+-..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~ 102 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEAR 102 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 4568999999999999999999999999999999976554
No 16
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.65 E-value=0.021 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHH-HHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI-CSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLL-aS~FI 230 (289)
++-+||=-|||.||-|.-||++||.|++.|.|--.+- +.+.+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a 72 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLA 72 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Confidence 4569999999999999999999999999999987774 34443
No 17
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.56 E-value=0.088 Score=46.08 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=44.8
Q ss_pred HhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHH
Q 023006 167 RDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 167 Rd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~F 229 (289)
++..+..+++.|.. + .....+||=.|||.|.++..++..|..+.|.|.|--|+...+-
T Consensus 38 ~~~~~~~~~~~l~~--~---~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~ 95 (219)
T TIGR02021 38 RAAMRRKLLDWLPK--D---PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARN 95 (219)
T ss_pred HHHHHHHHHHHHhc--C---CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 33445566666654 1 1245689999999999999999999999999999999876543
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=95.44 E-value=0.027 Score=53.92 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=35.5
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
+..+||=-|||.|+++..++++|+.+.|.|+|.-|+-..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A 182 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEA 182 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 356999999999999999999999999999999998544
No 19
>PRK14967 putative methyltransferase; Provisional
Probab=94.72 E-value=0.061 Score=47.64 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCCeEEecCCCchhhHHHHHhhCC-eeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf-~vqgNEfSy~MLLaS 227 (289)
+..+||-+|||.|.++..+|+.|. .+.+.|.|-.|+-..
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a 75 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 346899999999999999999987 789999999888644
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.26 E-value=0.16 Score=45.23 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=34.9
Q ss_pred CCCeEEecCCCchhhHHHHHhh----CCeeeeechhHHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~----Gf~vqgNEfSy~MLLaS~FI 230 (289)
+..+||--|||.|+++..++++ +..+.|.|.|--|+-..+-.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~ 98 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 98 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 4468999999999999999985 56799999999999555433
No 21
>PRK14968 putative methyltransferase; Provisional
Probab=94.06 E-value=0.072 Score=44.40 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=34.6
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
+..+||.+|||.|.++..+|++|-.+.|.|.|--|+-..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a 61 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECA 61 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHH
Confidence 345899999999999999999999999999999887544
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=94.05 E-value=0.39 Score=45.76 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCC--CCCCCCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHHHH
Q 023006 173 PILEELDALFPN--RSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 173 PILe~L~~~fP~--~~~r~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~FI 230 (289)
.+++++-+.... .......+||=-|||.|.++..||++ |..+.|.|+|-.|+-..+-.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANAL 160 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence 455555554432 11235578999999999999999987 89999999999998655443
No 23
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.98 E-value=0.12 Score=45.87 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=34.6
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
..+||--|||.|+++..|++. |..+.|.|.|--|+-..+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~ 84 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK 84 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 457999999999999999987 688999999999988664
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.90 E-value=0.23 Score=40.96 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCeEEecCCCchhhHHHHH-hh--CCeeeeechhHHHHHHHHHHhhc
Q 023006 189 SPPACLVPGAGLGRLALEIS-HL--GFISQGNEFSYYMMICSSFILNH 233 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA-~~--Gf~vqgNEfSy~MLLaS~FILN~ 233 (289)
++.+||=-|||.|++++.++ ++ +..+.|.|.|--|+-..+-....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence 56899999999999999999 44 68899999999999888776543
No 25
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.78 E-value=0.16 Score=46.07 Aligned_cols=56 Identities=25% Similarity=0.235 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe-eeeechhHHHHHHH--HHHhhc
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS--SFILNH 233 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~-vqgNEfSy~MLLaS--~FILN~ 233 (289)
-+++.|.... ....+||.-|||.|.|+..++++|.. +.|.|.|-.|+-.. ++-+|.
T Consensus 108 ~~l~~l~~~~-----~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 108 LCLEALEKLV-----LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred HHHHHHHhhc-----CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 3566666542 24568999999999999999999987 89999999998644 444443
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=93.64 E-value=0.16 Score=45.42 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=34.6
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||=-|||.|+++..+|+. +-.+.|+|.|-.|+-..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~ 72 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR 72 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 4568999999999999999987 578999999999986543
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.54 E-value=0.4 Score=41.24 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCCeEEecCCCchhhHHHHHhhC---CeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G---f~vqgNEfSy~MLLaS~ 228 (289)
+..+||.-|||.|+++..++.++ ..+.+.|.|--|+-...
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 93 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR 93 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Confidence 34689999999999999999886 78899999988865443
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=93.45 E-value=0.29 Score=37.70 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=33.7
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~F 229 (289)
..+||--|||.|+++..++++ +-.+.+.|.|..|+-..+-
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 348999999999999999987 4578899999998865543
No 29
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.42 E-value=0.36 Score=44.91 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCC-eeeeechhHHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf-~vqgNEfSy~MLLaS~ 228 (289)
-+++.|+++.. ...+||--|||.|.|+..++++|. .+.|.|.|-.|+-..+
T Consensus 148 l~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~ 199 (288)
T TIGR00406 148 LCLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESAR 199 (288)
T ss_pred HHHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHH
Confidence 35556665432 346899999999999999999986 6889999999886653
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=93.41 E-value=0.17 Score=45.55 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS 227 (289)
...+||==|||.|.++..|+++ |..+.|.|.|--|+-..
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a 69 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAA 69 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 4468999999999999999998 78899999999998644
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.01 E-value=0.54 Score=45.16 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=51.0
Q ss_pred CchHHHHHHHhhhhhcCCcCChHHHhhhh------HHH-HHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe-e
Q 023006 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCY------KPI-LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-S 214 (289)
Q Consensus 143 ~D~dKV~stLkq~vRDWS~EG~~ERd~~y------~PI-Le~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~-v 214 (289)
.+..++...|+++ .-|.. |..+..+.. ..+ .+.+..++.. ....+||=-|||.|++++.++..|.. +
T Consensus 73 ~~~~~l~~~l~~l-~p~~~-~~~~l~~~~~~~e~~s~~~~~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g~~~v 147 (314)
T TIGR00452 73 GQIKRILEEIMAL-MPWRK-GPFELSGIKIDSEWRSDIKWDRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHGAKSL 147 (314)
T ss_pred HHHHHHHHHHHhc-CCCCC-CCcccccccCCHHHHHHHHHHHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcCCCEE
Confidence 4455677777775 56763 333333211 111 1222222221 23458999999999999999999874 8
Q ss_pred eeechhHHHHHHH
Q 023006 215 QGNEFSYYMMICS 227 (289)
Q Consensus 215 qgNEfSy~MLLaS 227 (289)
.|.|.|-.|+.-.
T Consensus 148 ~GiDpS~~ml~q~ 160 (314)
T TIGR00452 148 VGIDPTVLFLCQF 160 (314)
T ss_pred EEEcCCHHHHHHH
Confidence 9999999998543
No 32
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=92.99 E-value=0.2 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=34.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||=-|||.|.|+.++++++-.+.+.|.+-.|+-..+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~ 52 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLR 52 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 3458999999999999999999989999999988876543
No 33
>PRK04148 hypothetical protein; Provisional
Probab=92.98 E-value=0.18 Score=43.38 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchh-hHHHHHhhCCeeeeechhHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYM 223 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGR-LA~EIA~~Gf~vqgNEfSy~M 223 (289)
.|-++|.+.++.. +..+||+=|+|.|. +|-.|+++|+.|.+.|.+-..
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKA 51 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHH
Confidence 4667777777653 34689999999995 999999999999999999884
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=92.90 E-value=0.14 Score=37.30 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=31.9
Q ss_pred EecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHHHHhh
Q 023006 194 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 194 LVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~FILN 232 (289)
|--|||.|+.+.-++++ +..+.+.|.|.-|+-..+=...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc
Confidence 55799999999999999 9999999999998877665544
No 35
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.88 E-value=0.3 Score=45.03 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
.+++.+-+.+.. .+..+||=-|||.|.|+..|+++|-.+.|.|.|--|+-..+
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 355555554432 23458999999999999999999889999999999886653
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=92.86 E-value=0.3 Score=41.80 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=33.4
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCe--eeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~--vqgNEfSy~MLLaS~ 228 (289)
.+.+||-.|||.|.+...+++.|.. +.+.|.|..|+-...
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 75 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAK 75 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHH
Confidence 3468999999999999999998754 489999999985443
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.29 E-value=0.58 Score=42.93 Aligned_cols=82 Identities=20% Similarity=0.067 Sum_probs=51.3
Q ss_pred CchHHHHHHHhhhhhcCCcCChHHHhhh---hHHHHH-HHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-C--Ceee
Q 023006 143 ADVDKVRCIIRNIVRDWAAEGKTERDQC---YKPILE-ELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQ 215 (289)
Q Consensus 143 ~D~dKV~stLkq~vRDWS~EG~~ERd~~---y~PILe-~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-G--f~vq 215 (289)
.|+-++.+.++.+...++..+..-.+.. +..+.. .+.+.... ++..+||-=|||.|+++..+++. | -.+.
T Consensus 26 ~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 26 RDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred CChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 5666666666666666665554322210 111211 12222221 24568999999999999999986 4 3789
Q ss_pred eechhHHHHHHH
Q 023006 216 GNEFSYYMMICS 227 (289)
Q Consensus 216 gNEfSy~MLLaS 227 (289)
|.|.|--|+-..
T Consensus 103 gvD~S~~ml~~A 114 (261)
T PLN02233 103 GLDFSSEQLAVA 114 (261)
T ss_pred EEECCHHHHHHH
Confidence 999999998654
No 38
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.21 E-value=0.39 Score=45.35 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhh
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN 232 (289)
+..+||=||||.|.++.|.+..|..+.|.|.|.-|+-..+--+.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~ 225 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE 225 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999876554443
No 39
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.02 E-value=0.61 Score=44.89 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCC----CCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 173 PILEELDALFPNRS----KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 173 PILe~L~~~fP~~~----~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
.|.+.|.++++... .....+||==|||.|+++..+|+.|+.+.|.|.|--|+-..+
T Consensus 111 ~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar 170 (322)
T PLN02396 111 FIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIAR 170 (322)
T ss_pred HHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 35555666665321 124458999999999999999999999999999999987665
No 40
>PRK05785 hypothetical protein; Provisional
Probab=91.92 E-value=0.4 Score=43.13 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~ 228 (289)
.+++.|....+ ...+||==|||+|+++..|+++ |..+.|.|+|--|+-..+
T Consensus 40 ~~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 40 ELVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred HHHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 45666665433 2458999999999999999998 789999999999987643
No 41
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=91.90 E-value=0.61 Score=42.12 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=33.8
Q ss_pred CCCeEEecCCCchhhHHHHHhh----CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~----Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||-=|||.|.++..+++. |..+.|.|.|.-|+-..+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~ 99 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR 99 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 3468999999999999999872 678999999999995543
No 42
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=91.70 E-value=0.5 Score=45.00 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=35.0
Q ss_pred CCeEEecCCCchhhHHHHHhhCCe-eeeechhHHHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFI 230 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~-vqgNEfSy~MLLaS~FI 230 (289)
..+||==|||.|++++.+|..|.. |.|.|.|..|+.-.+.+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~ 164 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV 164 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 458999999999999999999865 89999999998644443
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.45 E-value=0.96 Score=39.15 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=35.4
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
...+||--|||.|.++..+++.|..+.+.|.|--|+-..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~ 84 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAK 84 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 4678999999999999999999999999999999876554
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.41 E-value=0.19 Score=47.31 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhhcCCcCChHHHhhhhHHH-HHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHH
Q 023006 146 DKVRCIIRNIVRDWAAEGKTERDQCYKPI-LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (289)
Q Consensus 146 dKV~stLkq~vRDWS~EG~~ERd~~y~PI-Le~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~ML 224 (289)
...-+.|++...| .+|+...--...|+ ++.+.+....+......+||==|||-|-|+--+|++|+.|+|+|.|--|+
T Consensus 17 ~~~F~~la~~wwd--~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I 94 (243)
T COG2227 17 LDKFEALASRWWD--PEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPI 94 (243)
T ss_pred HHHHHHHHhhhcC--CCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHH
Confidence 4445677776655 45554443233322 22333333322224678999999999999999999999999999999887
Q ss_pred HHH
Q 023006 225 ICS 227 (289)
Q Consensus 225 LaS 227 (289)
=..
T Consensus 95 ~~A 97 (243)
T COG2227 95 EVA 97 (243)
T ss_pred HHH
Confidence 554
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=91.38 E-value=0.55 Score=41.14 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHHh
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FIL 231 (289)
..+||=+|||.|.++..+++. +..+.|.|.|.-|+-...-.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 458999999999999999987 678899999999987665444
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=91.28 E-value=0.39 Score=40.86 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+.+||-.|||.|.++..++.+|-.+.+.|.|.-|+-..+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 58 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELR 58 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHH
Confidence 357999999999999999999888999999999976543
No 47
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=91.26 E-value=0.61 Score=43.64 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=57.7
Q ss_pred HHHHHHhhhhh--cCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh---CCeeeeechhH
Q 023006 147 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (289)
Q Consensus 147 KV~stLkq~vR--DWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~---Gf~vqgNEfSy 221 (289)
+=.....+|++ +|-. -..|.+ .+....+.|.+.++ ...+||=.|||.||.+..|++. |+.+.+.|.|-
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 44455666666 4443 334432 33333444444443 3457999999999999999877 69999999999
Q ss_pred HHHHHHHHHhhccCCCCceEEeeccccc
Q 023006 222 YMMICSSFILNHTETAGEWNIYPWIHSN 249 (289)
Q Consensus 222 ~MLLaS~FILN~~~~~~~~tIyPFihs~ 249 (289)
-||-...=-+... ....+|.+....+
T Consensus 99 ~mL~~a~~~l~~~--~p~~~v~~i~gD~ 124 (301)
T TIGR03438 99 DALKESAAALAAD--YPQLEVHGICADF 124 (301)
T ss_pred HHHHHHHHHHHhh--CCCceEEEEEEcc
Confidence 9986553322211 1235566655444
No 48
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=91.19 E-value=0.51 Score=43.13 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+++.|.+.... .+..+||--|||.|.|...|++++..+.+.|.+--|+-...
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 24568999999999999999999989999999998876554
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=90.98 E-value=0.2 Score=44.13 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
......++|+. ...+||--|||.|.++..||+. +-.+.|+|.|-.|+-...
T Consensus 29 ~~~~~~~~~~~----~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 29 APLDWAELFGN----DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred CCCCHHHHcCC----CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH
Confidence 33445555554 3568999999999999999987 467899999999886554
No 50
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=90.82 E-value=0.59 Score=43.93 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
..+||=.|||.|.++..+|+.|-.+.|.|.|-.|+-..+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 358999999999999999999999999999999987654
No 51
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.47 E-value=0.48 Score=43.28 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCeEEecCCCchhhHHHHHhh-----CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-----Gf~vqgNEfSy~MLLaS 227 (289)
...+||-=|||.|.++..|++. |..+.|.|.|-.|+-..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A 128 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYA 128 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHH
Confidence 3467999999999999999875 24679999999998654
No 52
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.42 E-value=1.9 Score=37.84 Aligned_cols=51 Identities=20% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
.++.|...... ....+||--|||.|.++..+++.|..+.+.|.|.-|+...
T Consensus 36 ~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 36 RLNYIREHAGG---LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVA 86 (233)
T ss_pred HHHHHHHhccC---CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 34555554431 2456899999999999999999999999999998886544
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.85 E-value=0.59 Score=45.83 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS 227 (289)
..+||=-|||.|+++..+|+.+..+.|+|+|--|+-..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a 75 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKN 75 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHH
Confidence 44899999999999999999999999999999998543
No 54
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=89.52 E-value=1.1 Score=41.70 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=51.5
Q ss_pred CCcCChHHHhhhhHHHHHHHHhhCC-CCCCCCCCeEEecCCCchhhHHHHHhhCCee--eeechhHHHHHHHHHHhhccC
Q 023006 159 WAAEGKTERDQCYKPILEELDALFP-NRSKESPPACLVPGAGLGRLALEISHLGFIS--QGNEFSYYMMICSSFILNHTE 235 (289)
Q Consensus 159 WS~EG~~ERd~~y~PILe~L~~~fP-~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~v--qgNEfSy~MLLaS~FILN~~~ 235 (289)
|=.+-+.|| |++.|..... .+-.+...+||==|||-|.|.++||+.||.. +|.|||--..-...-|-.+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 666667777 5555555433 1112234499999999999999999999998 699999877655555555443
Q ss_pred CCC
Q 023006 236 TAG 238 (289)
Q Consensus 236 ~~~ 238 (289)
..+
T Consensus 116 ~~n 118 (227)
T KOG1271|consen 116 FSN 118 (227)
T ss_pred CCc
Confidence 333
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.00 E-value=0.53 Score=36.20 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=27.5
Q ss_pred EEecCCCchhhHHHHHhh---C--CeeeeechhHHHHHHH
Q 023006 193 CLVPGAGLGRLALEISHL---G--FISQGNEFSYYMMICS 227 (289)
Q Consensus 193 VLVPGsGLGRLA~EIA~~---G--f~vqgNEfSy~MLLaS 227 (289)
||=.|||.||....++.. | -.+.|.|+|--|+-..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~ 40 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELA 40 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHH
Confidence 677899999999999988 4 7888999999998644
No 56
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.93 E-value=0.89 Score=41.77 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=34.3
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||=-|||.|.++..||+. |..+.|.|.|--|+-..+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAK 92 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHH
Confidence 4568999999999999999875 789999999999976544
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=88.83 E-value=1.2 Score=43.69 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=34.9
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||--|||.|.++..+|+. |..+.|.|.|--|+-..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~ 207 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQ 207 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4568999999999999999986 899999999999986543
No 58
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.70 E-value=0.72 Score=32.49 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.7
Q ss_pred eEEecCCCchhhHHHHHh-hCCeeeeechhHHHHHHHH
Q 023006 192 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 192 rVLVPGsGLGRLA~EIA~-~Gf~vqgNEfSy~MLLaS~ 228 (289)
+||..|||.|.+...+++ .+..+.+.|.+.-++....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999998 5788899999988776665
No 59
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=87.72 E-value=0.11 Score=39.43 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.7
Q ss_pred CCCchhhHHHHHhh--CCeeeeechhHHHH
Q 023006 197 GAGLGRLALEISHL--GFISQGNEFSYYMM 224 (289)
Q Consensus 197 GsGLGRLA~EIA~~--Gf~vqgNEfSy~ML 224 (289)
|||.|++...|+.. +..+.|.|.|--|+
T Consensus 4 GcG~G~~~~~l~~~~~~~~~~~~D~s~~~l 33 (99)
T PF08242_consen 4 GCGTGRLLRALLEELPDARYTGVDISPSML 33 (99)
T ss_dssp STTTS-TTTTHHHHC-EEEEEEEESSSSTT
T ss_pred CccChHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 99999999999988 88899999999998
No 60
>PRK10742 putative methyltransferase; Provisional
Probab=87.55 E-value=0.71 Score=43.64 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhhcc
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN~~ 234 (289)
+|++++.- +. ...++||=-=+||||.++|+|.+|..|++.|-|-.+...-.--|...
T Consensus 77 ~l~kAvgl----k~-g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 77 AVAKAVGI----KG-DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred HHHHHhCC----CC-CCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence 57776642 11 12358999999999999999999999999999999988887777763
No 61
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=86.93 E-value=1.6 Score=40.42 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=32.1
Q ss_pred CCCeEEecCCCchhhHHHHHh----h-------CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISH----L-------GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~----~-------Gf~vqgNEfSy~MLLaS~ 228 (289)
.+.+||.-|||+|.-+|.||. . ++.+.|.|.|--|+-..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 568999999999997776653 2 478999999999996543
No 62
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=86.46 E-value=3.5 Score=38.56 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=35.0
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FI 230 (289)
..+||=.|||.|.++..+|+. +..+.|.|.|--|+-..+--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n 164 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN 164 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999987 57899999999998665433
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=86.37 E-value=5.5 Score=35.30 Aligned_cols=39 Identities=10% Similarity=-0.044 Sum_probs=33.8
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
..+||-=|||.|.++..+|++ +..+.+.|.|--|+-..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~ 86 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR 86 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence 568999999999999999974 688999999999985443
No 64
>PRK06202 hypothetical protein; Provisional
Probab=86.24 E-value=6.3 Score=34.88 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCeEEecCCCchhhHHHHHhh----CC--eeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL----GF--ISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~----Gf--~vqgNEfSy~MLLaS~ 228 (289)
+..+||==|||.|.++..|++. |+ .+.|.|.|.-|+-..+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~ 105 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFAR 105 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH
Confidence 5679999999999999999853 54 7899999999986543
No 65
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=86.05 E-value=3.2 Score=36.24 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCCeEEecCCCchhhHHHHHhh---CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~---Gf~vqgNEfSy~MLLaS~ 228 (289)
...+||=-|||.|.++..+++. +..+.|.|.|-.|+-...
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999976 368899999999975443
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=85.57 E-value=4.3 Score=35.50 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=32.4
Q ss_pred CCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICS 227 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS 227 (289)
..+||-=|||.|.++..+|.++ ..+.|.|.|--|+-..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a 82 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFL 82 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHH
Confidence 4589999999999999999774 5689999999988433
No 67
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=85.29 E-value=6.5 Score=36.92 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICS 227 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS 227 (289)
..++.|-+.... ++..+||-=|||-|.++..+|++ |..|+|...|--+.-..
T Consensus 49 ~k~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 49 RKLDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYA 101 (273)
T ss_dssp HHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHH
T ss_pred HHHHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHH
Confidence 355555554432 35679999999999999999999 99999999999887654
No 68
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=85.12 E-value=7.2 Score=33.25 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe--eeeechhHHHHHHHHHH
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFI 230 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~--vqgNEfSy~MLLaS~FI 230 (289)
.-|++.|... ...+||--|||.|-|+.-+|+++-. +.+.|.|..++-+..--
T Consensus 21 ~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n 74 (170)
T PF05175_consen 21 RLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN 74 (170)
T ss_dssp HHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH
T ss_pred HHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH
Confidence 4567777775 3457999999999999999999765 88999999888777443
No 69
>PRK07402 precorrin-6B methylase; Provisional
Probab=84.96 E-value=3.8 Score=35.42 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=33.9
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
...+||=-|||.|.++.++|++ +..+.+.|.|--|+-...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~ 81 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR 81 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 4468999999999999999976 578999999998876553
No 70
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=84.78 E-value=2.9 Score=40.84 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
.++++.+.+.+.. .+..+||-.|||.|.++..+|+.+-.+.|.|.|--|+-..+
T Consensus 278 ~~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~ 331 (431)
T TIGR00479 278 EKLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ 331 (431)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH
Confidence 3455555554421 13358999999999999999999889999999999986553
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=84.72 E-value=3.6 Score=35.91 Aligned_cols=40 Identities=20% Similarity=0.032 Sum_probs=33.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+..+||-.|||.|.++.-+|+++-.+.+.|.|--|+-..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~ 117 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAK 117 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHH
Confidence 4568999999999999988988668899999988875443
No 72
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=84.50 E-value=2.7 Score=38.15 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=41.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FI 230 (289)
+++.+-+.... .+..+||-=|||.|.|...|++++-.+.+.|.+--|+-..+-.
T Consensus 17 i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 17 VIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKL 70 (253)
T ss_pred HHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHH
Confidence 55555554432 2456899999999999999999998899999999987665533
No 73
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=84.39 E-value=4.1 Score=39.39 Aligned_cols=86 Identities=23% Similarity=0.195 Sum_probs=60.7
Q ss_pred chHHHHHHHhhhhhcCCcCChHHHhh-----hhHHHHHHHHhhCCCCCCC----CCCeEEecCCCchhhHHHHHhhCCee
Q 023006 144 DVDKVRCIIRNIVRDWAAEGKTERDQ-----CYKPILEELDALFPNRSKE----SPPACLVPGAGLGRLALEISHLGFIS 214 (289)
Q Consensus 144 D~dKV~stLkq~vRDWS~EG~~ERd~-----~y~PILe~L~~~fP~~~~r----~~~rVLVPGsGLGRLA~EIA~~Gf~v 214 (289)
|-+.|+.--..-.-+|+.+|-.+=-- -...|-+-+.+.+++.... ...+||==|||.|=|.--||++|..|
T Consensus 35 ~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V 114 (282)
T KOG1270|consen 35 DVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQV 114 (282)
T ss_pred cHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCee
Confidence 33678877777778888888643211 1234555555555431111 13469999999999999999999999
Q ss_pred eeechhHHHHHHHHH
Q 023006 215 QGNEFSYYMMICSSF 229 (289)
Q Consensus 215 qgNEfSy~MLLaS~F 229 (289)
+|+|.|--|.-+.+-
T Consensus 115 ~GID~s~~~V~vA~~ 129 (282)
T KOG1270|consen 115 TGIDASDDMVEVANE 129 (282)
T ss_pred EeecccHHHHHHHHH
Confidence 999999999987754
No 74
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=83.68 E-value=2.8 Score=42.21 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=47.6
Q ss_pred hHHHhhhhHH-HHHHHHhhCCCCCC-CCCCeEEecCCCchhhHHHHHhhC------CeeeeechhHHHHHHHHHHhhccC
Q 023006 164 KTERDQCYKP-ILEELDALFPNRSK-ESPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTE 235 (289)
Q Consensus 164 ~~ERd~~y~P-ILe~L~~~fP~~~~-r~~~rVLVPGsGLGRLA~EIA~~G------f~vqgNEfSy~MLLaS~FILN~~~ 235 (289)
...|-.+|.. |.++|......... ...+.|||=|||.|-|+.-.++.| ..|.+.|-|-...++.+-+.+...
T Consensus 159 D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~ 238 (448)
T PF05185_consen 159 DPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG 238 (448)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC
Confidence 3444444443 44555555443221 136789999999999998887765 667788888777776655544333
Q ss_pred CCCceEEe
Q 023006 236 TAGEWNIY 243 (289)
Q Consensus 236 ~~~~~tIy 243 (289)
-.+.++|.
T Consensus 239 w~~~V~vi 246 (448)
T PF05185_consen 239 WGDKVTVI 246 (448)
T ss_dssp TTTTEEEE
T ss_pred CCCeEEEE
Confidence 34556663
No 75
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=83.64 E-value=3.6 Score=35.80 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=32.0
Q ss_pred eEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 192 rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
+||--|||.|.++..+|+. +..+.|.|.|--|+-..+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~ 40 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGR 40 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 6999999999999999987 478899999999975443
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.43 E-value=3.9 Score=36.62 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHHHHh
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~FIL 231 (289)
+..+||-+|||.|.++..++... ..+.|.|.|--|+-..+-.+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 45689999999999999999885 78889999998876654433
No 77
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=82.76 E-value=2.9 Score=36.05 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHH
Q 023006 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICS 227 (289)
Q Consensus 175 Le~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS 227 (289)
|++|.+.++ ...+||==|||.|+++..++.. +..+.|.|.|--|+...
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHH
Confidence 445555544 2358999999999999999865 67778999998887543
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=81.61 E-value=4 Score=35.94 Aligned_cols=55 Identities=15% Similarity=-0.004 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe---eeeechhHHHHHHHHHHh
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~---vqgNEfSy~MLLaS~FIL 231 (289)
++..+.+.+.. ++..+||-=|||.|.++..||++.-. +.+.|.+.-|+-..+-.+
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~ 122 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL 122 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34444444432 24569999999999999999988433 899999999986654444
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.08 E-value=7.1 Score=37.08 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=35.2
Q ss_pred CeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHHh
Q 023006 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FIL 231 (289)
.+||=.|||.|.++..+|+. +..+.+.|.|--|+-..+--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 58999999999999999987 578999999999987664443
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=80.67 E-value=3.1 Score=36.22 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS 227 (289)
.+.+||-=|||.|.++..+|++ +..+.|.|.|.-|+-..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a 56 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA 56 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH
Confidence 3468999999999999999998 57889999999998554
No 81
>PRK00811 spermidine synthase; Provisional
Probab=80.05 E-value=3.5 Score=38.47 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CC-eeeeechhHHHHHHH-HHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICS-SFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf-~vqgNEfSy~MLLaS-~FI 230 (289)
++.+||+=|||.|.++.++++. +. .++++|.+--|+=.. .|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~ 120 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYL 120 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 4568999999999999999987 54 678999999888544 443
No 82
>PRK08317 hypothetical protein; Provisional
Probab=79.68 E-value=7.9 Score=32.92 Aligned_cols=40 Identities=23% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCeEEecCCCchhhHHHHHhhC---CeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G---f~vqgNEfSy~MLLaS~ 228 (289)
...+||.=|||.|.++.++|.+. -.+.|.|.|--|+-..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~ 61 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK 61 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 45689999999999999999863 47889999988876553
No 83
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=79.07 E-value=6.2 Score=36.25 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHHh
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FIL 231 (289)
..+||=.|||.|-++..+++. |..+.+.|.|..|+-..+--+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 458999999999999999976 678999999999987665444
No 84
>PHA03411 putative methyltransferase; Provisional
Probab=78.26 E-value=3.9 Score=39.31 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=35.0
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FI 230 (289)
..+||=+|||.|.++..++++ +..+.|.|.|--|+-..+-.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n 107 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL 107 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence 458999999999999999876 57899999999999766543
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=77.97 E-value=8.7 Score=33.39 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCCeEEecCCCchhhHHHHHhh-C--CeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-G--f~vqgNEfSy~MLLaS~ 228 (289)
...+||--|||.|.++.++|++ | -.+.+.|.|--|+-..+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4568999999999999999975 3 46889999999887654
No 86
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=77.97 E-value=4.8 Score=34.41 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=32.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS 227 (289)
...+||=-|||.|.++..+|+++ ..+.+.|.|-.|+-..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a 71 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLI 71 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 34589999999999999999874 6889999999886543
No 87
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.93 E-value=6.7 Score=38.07 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=35.3
Q ss_pred CeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FI 230 (289)
.+||=-|||.|.++.++|..|-.+.|.|.|..++-..+--
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHH
Confidence 4799999999999999999998999999999998755433
No 88
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=76.73 E-value=12 Score=34.57 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=34.0
Q ss_pred CeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FI 230 (289)
.+||-.|||.|.++..+|.. +-.+.|.|.|--|+-..+-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999987 36889999999887655443
No 89
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=76.68 E-value=6.1 Score=39.03 Aligned_cols=43 Identities=19% Similarity=0.018 Sum_probs=37.1
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHh
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FIL 231 (289)
+..+||=-|||.|.++..+|+.+-.+.|.|.|--|+-..+--+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~ 339 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA 339 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 3468999999999999999999988999999999987765433
No 90
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=75.60 E-value=4.4 Score=36.66 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=34.0
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CC--eeeeechhHHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf--~vqgNEfSy~MLLaS~FI 230 (289)
...+||.=|||.|.++..++++ |- .+.+.|.|-.|+-..+-.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~ 121 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN 121 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence 4568999999999999988875 54 588999999998765543
No 91
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=75.52 E-value=18 Score=34.45 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
|++.|-+.... +...+||==|||+|.|...|+..+-.+.+.|.+--|+-..+
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~ 75 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELK 75 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 44555444332 24568999999999999999999988999999998876554
No 92
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=74.36 E-value=6.4 Score=33.44 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.4
Q ss_pred CCCeEEecCCCchhhHHHHHhhCC---eeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf---~vqgNEfSy~MLLaS~ 228 (289)
...+||--|||.|.++..+++.+. .+.+.|.|-.|+-...
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 456999999999999999998865 6789999988865543
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=74.17 E-value=25 Score=30.95 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=37.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh---CCeeeeechhHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICS 227 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~---Gf~vqgNEfSy~MLLaS 227 (289)
++..+.+.+.. ++..+||-=|||.|.++..+|++ +-.+.|.|.|--|+-..
T Consensus 60 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a 113 (205)
T PRK13944 60 MVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYA 113 (205)
T ss_pred HHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 44445444432 23468999999999999999875 24789999998887543
No 94
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=73.81 E-value=8.6 Score=35.47 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHh---------hCCeeeeechhHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICS 227 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~---------~Gf~vqgNEfSy~MLLaS 227 (289)
.|.+.+.+.... ....+||=|.||.|.+..++.+ ......|.|.+..+....
T Consensus 33 ~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la 93 (311)
T PF02384_consen 33 EIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA 93 (311)
T ss_dssp HHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH
T ss_pred HHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH
Confidence 355555555422 2456899999999999888876 357777999888876544
No 95
>PHA03412 putative methyltransferase; Provisional
Probab=73.67 E-value=5.3 Score=37.67 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=35.1
Q ss_pred CCeEEecCCCchhhHHHHHhh-----CCeeeeechhHHHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~-----Gf~vqgNEfSy~MLLaS~FI 230 (289)
..+||=||||.|.|+..++++ .-.+.+.|.+.-|+-..+-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 469999999999999999875 35788999999999887743
No 96
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=72.33 E-value=5.6 Score=36.59 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=40.9
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHH
Q 023006 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYM 223 (289)
Q Consensus 164 ~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~M 223 (289)
..||+. .||++.|++++|.... +||-=|||+|-=|..+|+. ...=|--|..-.-
T Consensus 6 AaeRNk--~pIl~vL~~~l~~~~~----~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~ 61 (204)
T PF06080_consen 6 AAERNK--DPILEVLKQYLPDSGT----RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNL 61 (204)
T ss_pred hhhhCH--hHHHHHHHHHhCccCc----eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHH
Confidence 456665 7999999999986532 8999999999999999986 4544555554443
No 97
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=71.54 E-value=9.3 Score=37.84 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=38.7
Q ss_pred HHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHH
Q 023006 178 LDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 178 L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~F 229 (289)
|.+.+|... .-+||==|||.|.|+..++++ +..+.+.|.|..|+-..+-
T Consensus 220 lL~~lp~~~---~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~ 270 (378)
T PRK15001 220 FMQHLPENL---EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL 270 (378)
T ss_pred HHHhCCccc---CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 444555322 248999999999999999998 5789999999999887743
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=71.33 E-value=6.7 Score=38.53 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=34.1
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS 227 (289)
+..+||==|||.|.++..||+. |..+.|.|.|--|+-..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A 305 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA 305 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence 4568999999999999999976 78899999999998654
No 99
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=70.57 E-value=21 Score=25.02 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=26.9
Q ss_pred EEecCCCchhhH--HHHHhhCCeeeeechhHHHHHH
Q 023006 193 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMIC 226 (289)
Q Consensus 193 VLVPGsGLGRLA--~EIA~~Gf~vqgNEfSy~MLLa 226 (289)
||--|||.|+.. ..+...++.+.|.|.+..|+-.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLAL 87 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHH
Confidence 999999999965 3333344678889999999887
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=69.84 E-value=22 Score=36.31 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=33.4
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
..+||=.|||.|.++..+|+. +..+.+.|.|--|+-..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~ 179 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK 179 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 468999999999999999875 678999999988776654
No 101
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=69.53 E-value=8.1 Score=33.14 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=32.7
Q ss_pred HHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCC---eeeeechhHHH
Q 023006 178 LDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYM 223 (289)
Q Consensus 178 L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf---~vqgNEfSy~M 223 (289)
+.+.++.. ++..+||.=|||.|.++..++++.. .+.+.|.|-.|
T Consensus 23 ~~~~~~~i--~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 23 LNQKFKLI--KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred HHHHhccc--CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 44444432 2456899999999999999988743 47899999755
No 102
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=69.15 E-value=6.1 Score=36.13 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCCeEEecCCCchhhHHHHHhh-C--CeeeeechhHHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-G--f~vqgNEfSy~MLLaS~FI 230 (289)
+..+||=-|||+|-++..|++. | -.+.|.|+|.-||-..+--
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 4569999999999999999986 3 5889999999999776543
No 103
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=69.05 E-value=8.9 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.102 Sum_probs=37.0
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHHHHh
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~FIL 231 (289)
+..+||==|||+|.+|..+|+.. -.++|.|+|--||-..+=-+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~ 95 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL 95 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh
Confidence 56799999999999999999984 77889999999998765433
No 104
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=68.74 E-value=12 Score=34.42 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHH
Q 023006 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICS 227 (289)
Q Consensus 170 ~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS 227 (289)
.|..++..+...... ++.+||+-|+|.|.++.++++.+ -.++..|.+--|+-..
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a 112 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELS 112 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHH
Confidence 455566555444321 23499999999999999998875 3578999998885443
No 105
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=68.13 E-value=18 Score=31.90 Aligned_cols=43 Identities=21% Similarity=-0.014 Sum_probs=34.4
Q ss_pred CeEEecCCCchhhHHHHHhhCC-eeeeechhHHHHH--HHHHHhhc
Q 023006 191 PACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMI--CSSFILNH 233 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf-~vqgNEfSy~MLL--aS~FILN~ 233 (289)
.+||=-+||.|-++.|++.+|- .|.++|.+.-++- ..|.-++.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~ 96 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK 96 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4799999999999999999996 6889998876664 44555554
No 106
>PRK06922 hypothetical protein; Provisional
Probab=67.55 E-value=7.1 Score=41.84 Aligned_cols=39 Identities=18% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~ 228 (289)
..+||=.|||.|.++..||++ +..+.|.|.|--|+-..+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ar 459 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLK 459 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 468999999999999999875 689999999999986543
No 107
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=66.03 E-value=4.4 Score=36.75 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCeEEecCCCchhhHHHHHhh-CCe-eeeechhHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~-Gf~-vqgNEfSy~MLLaS 227 (289)
....+==|||+|+++.-.|.. |+. +.|+|..-.-.-+.
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a 82 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLA 82 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHH
Confidence 345666799999999999865 888 88999876544433
No 108
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=65.45 E-value=8.1 Score=33.31 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=16.4
Q ss_pred CeEEec--CCCchhhHHHHHhh
Q 023006 191 PACLVP--GAGLGRLALEISHL 210 (289)
Q Consensus 191 ~rVLVP--GsGLGRLA~EIA~~ 210 (289)
.+|-+| |||+|+|-|+.++.
T Consensus 114 ~sIa~P~IG~GlgGl~W~~V~~ 135 (154)
T PHA02595 114 PTIYIPRIGAGIAGGDWDKIEA 135 (154)
T ss_pred cEEeeCCCCccCCCCCHHHHHH
Confidence 467777 99999999998753
No 109
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=62.96 E-value=16 Score=33.90 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=36.2
Q ss_pred CCCeEEecCCCchhhHHHHHhhC-CeeeeechhHHHHHHHHHHhh
Q 023006 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G-f~vqgNEfSy~MLLaS~FILN 232 (289)
+...|+==|||+|||+.-.+.+| ..|.+.|...-++-+-+=..+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~ 89 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE 89 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH
Confidence 34579999999999999999999 889999999888766544433
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=62.92 E-value=23 Score=34.25 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CC--eeeeechhHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSF 229 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf--~vqgNEfSy~MLLaS~F 229 (289)
+..+||.-|||.|.++..+|++ |- .+.+.|.|--|+-..+-
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~ 123 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 123 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999986 32 48899999999865443
No 111
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=61.90 E-value=14 Score=36.05 Aligned_cols=39 Identities=15% Similarity=-0.036 Sum_probs=33.5
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS 227 (289)
...+||-=|||.|.++..+++. +..+.+.|.|-.|+-..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A 153 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 4568999999999999999875 57899999999997654
No 112
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=60.78 E-value=20 Score=32.27 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCCCeEEecCCCchhhHHHHHhh---------C--CeeeeechhHHHHHHH
Q 023006 188 ESPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICS 227 (289)
Q Consensus 188 r~~~rVLVPGsGLGRLA~EIA~~---------G--f~vqgNEfSy~MLLaS 227 (289)
..+++|+.-||+.|-=+|-||.+ + |.+.|.|.|-.++-..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A 80 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA 80 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH
Confidence 37899999999999999999863 2 6778999998887543
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=60.56 E-value=20 Score=36.43 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=34.9
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHHh
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FIL 231 (289)
..+||=-|||.|.++..+|+. +-.+.|.|.|.-|+-..+-..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 348999999999999999975 578899999999987665443
No 114
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=59.36 E-value=24 Score=34.24 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=36.2
Q ss_pred CeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHHHHhh
Q 023006 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~FILN 232 (289)
-+||=-|||.|-|+..+++++ -.+++.|.|..|+-..+--+.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~ 241 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA 241 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 379999999999999999984 588999999999988865443
No 115
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=58.14 E-value=23 Score=35.65 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCeEEecCCCchhhHHHHHhhC----------CeeeeechhHHHHHHHHHHh
Q 023006 189 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G----------f~vqgNEfSy~MLLaS~FIL 231 (289)
...+||=||||.|++...++... -.+.|.|.+-..+-.....|
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 56799999999999999887642 23457787776665554444
No 116
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=57.20 E-value=14 Score=34.75 Aligned_cols=44 Identities=32% Similarity=0.283 Sum_probs=32.8
Q ss_pred CCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhhc
Q 023006 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNH 233 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN~ 233 (289)
..+||===+||||=|+-+|..|+.|++.|-|-.|.+.-..-|.+
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r 119 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKR 119 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHH
T ss_pred CCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999888777765
No 117
>PRK04266 fibrillarin; Provisional
Probab=57.12 E-value=23 Score=32.30 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=44.5
Q ss_pred hhhcCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-C-CeeeeechhHHHHH
Q 023006 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMI 225 (289)
Q Consensus 155 ~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-G-f~vqgNEfSy~MLL 225 (289)
-+|-|.+ +.. ..-.-|+..+ +.++.. +..+||==|||.|.++..+|+. | -.+.|.|.|-.|+-
T Consensus 46 ~~~~~~~-~r~---~~~~~ll~~~-~~l~i~---~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~ 110 (226)
T PRK04266 46 EYREWNP-RRS---KLAAAILKGL-KNFPIK---KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR 110 (226)
T ss_pred EEEEECC-Ccc---chHHHHHhhH-hhCCCC---CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 3678887 332 2224555555 334432 4468999999999999999987 2 46889999999875
No 118
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=56.56 E-value=42 Score=32.24 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe-eeeechhHHHHHHH--HHHhhccCCCCceEE
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS--SFILNHTETAGEWNI 242 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~-vqgNEfSy~MLLaS--~FILN~~~~~~~~tI 242 (289)
.-.|+.|+++. .+..+||==|||.|-||.-.|++|-. |.|.|.+-...-+. |..+|+... ++.+
T Consensus 149 ~lcl~~l~~~~-----~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~--~~~v 215 (295)
T PF06325_consen 149 RLCLELLEKYV-----KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED--RIEV 215 (295)
T ss_dssp HHHHHHHHHHS-----STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT--CEEE
T ss_pred HHHHHHHHHhc-----cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe--eEEE
Confidence 34778888873 23459999999999999999999974 78999988876554 788887633 5555
No 119
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=56.41 E-value=5.4 Score=32.79 Aligned_cols=18 Identities=39% Similarity=0.662 Sum_probs=14.5
Q ss_pred eEEec--CCCchhhHHHHHh
Q 023006 192 ACLVP--GAGLGRLALEISH 209 (289)
Q Consensus 192 rVLVP--GsGLGRLA~EIA~ 209 (289)
+|-+| |||+|++.|+.+.
T Consensus 111 sva~P~iG~G~~G~~w~~v~ 130 (140)
T cd02901 111 SVAMPRIGCGLGGLDWEEVE 130 (140)
T ss_pred EEeeCCCCCcCCCCCHHHHH
Confidence 56665 8999999999875
No 120
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=54.73 E-value=40 Score=30.27 Aligned_cols=36 Identities=25% Similarity=0.048 Sum_probs=28.9
Q ss_pred CeEEecCCCchhhHHHHHhhC-CeeeeechhHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMIC 226 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~G-f~vqgNEfSy~MLLa 226 (289)
.+||=-|||.|-++.+.+.+| -.+.+.|.+.-++-.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~ 91 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ 91 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 489999999999999976665 467798888777543
No 121
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=54.69 E-value=23 Score=31.07 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCC--chh-hHHHHHhhCCeeee
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAG--LGR-LALEISHLGFISQG 216 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsG--LGR-LA~EIA~~Gf~vqg 216 (289)
+++.+++.+.+ -...+|||-|+| .|+ ++.-|..+|..+.-
T Consensus 31 ~v~l~~~~~~~---l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v 73 (168)
T cd01080 31 ILELLKRYGID---LAGKKVVVVGRSNIVGKPLAALLLNRNATVTV 73 (168)
T ss_pred HHHHHHHcCCC---CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE
Confidence 44455555433 256799999999 499 67777788987653
No 122
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.23 E-value=13 Score=35.69 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=24.1
Q ss_pred CCCeEEecCCCchhhHHHHHhh----CCeeee
Q 023006 189 SPPACLVPGAGLGRLALEISHL----GFISQG 216 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~----Gf~vqg 216 (289)
.+..|||-||--|.++|+||+. ||.|.+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~A 37 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYA 37 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEE
Confidence 5678999999999999988764 999964
No 123
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=52.26 E-value=26 Score=34.75 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=60.1
Q ss_pred HhhhhhcCCcCChHHHhh-----hhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHH
Q 023006 152 IRNIVRDWAAEGKTERDQ-----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (289)
Q Consensus 152 Lkq~vRDWS~EG~~ERd~-----~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLa 226 (289)
+.|+---|..+-..|-=. -...|.+++++++|+. ....+-+++=-.|-|.+.-+++..||+|.|-||+.-|.=+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~-~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPEL-GLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhh-cCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 346777788766555322 2234667777777765 3456667777889999999999999999999999999988
Q ss_pred HHHHhhc
Q 023006 227 SSFILNH 233 (289)
Q Consensus 227 S~FILN~ 233 (289)
.+-+=|.
T Consensus 288 r~~~g~~ 294 (359)
T KOG2872|consen 288 RRRVGNR 294 (359)
T ss_pred HHhhCCc
Confidence 8766543
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=51.39 E-value=35 Score=34.25 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=52.8
Q ss_pred CCchHHHHHHHhhhhhcCCcCChHHH--------hhhhHHHHH--HHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-
Q 023006 142 LADVDKVRCIIRNIVRDWAAEGKTER--------DQCYKPILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 210 (289)
Q Consensus 142 ~~D~dKV~stLkq~vRDWS~EG~~ER--------d~~y~PILe--~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~- 210 (289)
+..+..++.||..++--|-.+=..++ ...=.++++ .+...+.. .....||==|||.|+....+|++
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~~~ 144 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISK---NQEKILIEIGFGSGRHLLYQAKNN 144 (390)
T ss_pred ccchHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcC---CCCCeEEEEcCcccHHHHHHHHhC
Confidence 35567888888888877742111111 001122333 23333322 24568999999999999999998
Q ss_pred -CCeeeeechhHHHHHH
Q 023006 211 -GFISQGNEFSYYMMIC 226 (289)
Q Consensus 211 -Gf~vqgNEfSy~MLLa 226 (289)
+-.+.|.|.+.-|+..
T Consensus 145 P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 145 PNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCCEEEEECCHHHHHH
Confidence 5788999999877543
No 125
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=51.08 E-value=49 Score=26.44 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=35.6
Q ss_pred EecCCCchhhHHHHHhhCCe--eeeechhHHHH--HHHHHHhhccCCCCceEEeecccc
Q 023006 194 LVPGAGLGRLALEISHLGFI--SQGNEFSYYMM--ICSSFILNHTETAGEWNIYPWIHS 248 (289)
Q Consensus 194 LVPGsGLGRLA~EIA~~Gf~--vqgNEfSy~ML--LaS~FILN~~~~~~~~tIyPFihs 248 (289)
|==|||.|-++.-++++|.. +.+.|-+-.|+ +..++-+|.. .++++++..-+
T Consensus 3 lDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~ 58 (143)
T TIGR01444 3 IDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVG 58 (143)
T ss_pred EEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeee
Confidence 33499999999999998765 77888886665 4455555542 23566665543
No 126
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=50.71 E-value=51 Score=29.90 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHh--hCCeeeeechh--HHHHHHHHHHhhcc
Q 023006 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFS--YYMMICSSFILNHT 234 (289)
Q Consensus 159 WS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~--~Gf~vqgNEfS--y~MLLaS~FILN~~ 234 (289)
||+--..||. .|. +.+. +.-.||.+-||.|-.+.-+|+ .+=.|.++|.+ .+-+|.-+-.+|..
T Consensus 84 fs~rl~~Er~----Ri~----~~v~-----~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 84 FSPRLSTERR----RIA----NLVK-----PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp --GGGHHHHH----HHH----TC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EccccHHHHH----HHH----hcCC-----cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC
Confidence 7887778885 233 2221 345899999999999999999 56667788877 45566778888864
Q ss_pred CCCCceEEeecccccCCcCCccCCccceec
Q 023006 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (289)
Q Consensus 235 ~~~~~~tIyPFihs~SN~~s~edQLR~V~I 264 (289)
. +. |.|+-........ ..++--|-.
T Consensus 151 ~--~~--i~~~~~D~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 151 E--NR--IEVINGDAREFLP-EGKFDRVIM 175 (200)
T ss_dssp T--TT--EEEEES-GGG----TT-EEEEEE
T ss_pred C--Ce--EEEEcCCHHHhcC-ccccCEEEE
Confidence 2 23 5555555444443 333333333
No 127
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=50.68 E-value=37 Score=32.62 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhcCCc---------CChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhC-----
Q 023006 146 DKVRCIIRNIVRDWAA---------EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG----- 211 (289)
Q Consensus 146 dKV~stLkq~vRDWS~---------EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~G----- 211 (289)
+.|+.++.+.++||.. .-..|=...|..+.+.|.++|... .+..-++++|+|.| |+|.|.+.
T Consensus 16 ~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~--~~~~v~~~~gsgt~--~~Ea~~~nl~~~g 91 (360)
T PRK05355 16 EEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP--DNYKVLFLQGGASL--QFAMVPMNLLGGG 91 (360)
T ss_pred HHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEcCCchH--HHHHHHHhcCCCC
Confidence 7899999999999931 222333346667777777777531 12345777777765 55655432
Q ss_pred ---CeeeeechhHHHH
Q 023006 212 ---FISQGNEFSYYMM 224 (289)
Q Consensus 212 ---f~vqgNEfSy~ML 224 (289)
..+..-.|+..+.
T Consensus 92 ~~~l~i~~G~fg~r~~ 107 (360)
T PRK05355 92 KKADYVDTGSWSKKAI 107 (360)
T ss_pred CeEEEEECCHHHHHHH
Confidence 3334456776663
No 128
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.56 E-value=17 Score=33.21 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=35.0
Q ss_pred CCCeEEecCCCchhhHHHHHhhC-CeeeeechhHHHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G-f~vqgNEfSy~MLLaS~FI 230 (289)
++-+.+==|+|-||++...|+.| +.++|.|.......-+++-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH
Confidence 45677888999999999999999 9999999987766666553
No 129
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.43 E-value=66 Score=28.56 Aligned_cols=57 Identities=16% Similarity=0.012 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-C--CeeeeechhHHHHHHHHHHh
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-G--f~vqgNEfSy~MLLaS~FIL 231 (289)
+-+...+-+.+.. .+..+||-=|||.|.++.-+|++ | -.+.+.|.+--|+-..+=.+
T Consensus 62 p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 62 IHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred HHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3344444444332 23468999999999999999877 3 58899999999886654444
No 130
>PLN02366 spermidine synthase
Probab=49.42 E-value=40 Score=32.40 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHH-HHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMI-CSSFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLL-aS~FI 230 (289)
++.+||+=|+|.|-++.|+++.. -.++..|.+--|+= +..|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f 135 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF 135 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh
Confidence 46689999999999999999873 35778999986554 44554
No 131
>PRK04457 spermidine synthase; Provisional
Probab=49.12 E-value=57 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHH
Q 023006 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICS 227 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS 227 (289)
+.+||+=|+|.|-++..+++. +-.+++.|.+--|+-..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A 106 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVA 106 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 457999999999999999876 57789999999988664
No 132
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=47.51 E-value=35 Score=36.19 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=38.3
Q ss_pred CCeEEecCCCchhhHHHHHhhCCe-eeeechhHHHHHHH--HHHhhcc
Q 023006 190 PPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS--SFILNHT 234 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~Gf~-vqgNEfSy~MLLaS--~FILN~~ 234 (289)
..+||=-|||.|.++..+|+.|-. |++.|.|--|+-.. |+.+|..
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 458999999999999999999875 89999999998754 6666753
No 133
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=46.64 E-value=63 Score=31.49 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCe-eeeechhHHHHHHH--HHHhhcc
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS--SFILNHT 234 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~-vqgNEfSy~MLLaS--~FILN~~ 234 (289)
.-.|+.|+++.- +..+||==|||.|=|+.-.+++|-. +.|.|+.-.-+-++ |..+|+.
T Consensus 150 ~lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v 210 (300)
T COG2264 150 SLCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV 210 (300)
T ss_pred HHHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCC
Confidence 457788888642 5678999999999999999999977 88999999988887 7777875
No 134
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=45.92 E-value=35 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHhhCCCCCCCCCCeEEec--CCCchhhHHHHHh
Q 023006 169 QCYKPILEELDALFPNRSKESPPACLVP--GAGLGRLALEISH 209 (289)
Q Consensus 169 ~~y~PILe~L~~~fP~~~~r~~~rVLVP--GsGLGRLA~EIA~ 209 (289)
.+|.-+|+..++. +-..|.+| |||+|++.|+.+.
T Consensus 80 ~~~~~~l~~a~~~-------~~~sIa~P~ig~G~~g~~~~~~a 115 (118)
T PF01661_consen 80 SAYRNALQKAEEN-------GIKSIAFPAIGTGIGGFPWDEVA 115 (118)
T ss_dssp HHHHHHHHHHHHT-------TTSEEEEESTTSSTTSBTHHHHH
T ss_pred HHHHHHHHHHHHc-------CCcccccCcccCCCCCCCHHHHH
Confidence 3444555555442 33478888 8888888888764
No 135
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=45.64 E-value=58 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=33.6
Q ss_pred CeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~F 229 (289)
.+||=-+||.|.++.-+|+..-.+.|.|.|--|+-..+-
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY 246 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence 369999999999999888877789999999999866543
No 136
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=44.61 E-value=64 Score=29.80 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCeEEecCCCchhhHHHHHhhCC-eeeeechhHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf-~vqgNEfSy~MLLa 226 (289)
....||==|||+|.++.-+++.|- .+.|.|.|.-|+.-
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 445799999999999999999986 57899999988865
No 137
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=20 Score=37.07 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.0
Q ss_pred CeEEecCCCchhh--HHHHHhhCCeeee
Q 023006 191 PACLVPGAGLGRL--ALEISHLGFISQG 216 (289)
Q Consensus 191 ~rVLVPGsGLGRL--A~EIA~~Gf~vqg 216 (289)
.||.|=|+|+..| |+|||..||.|+-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~ 28 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTL 28 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEE
Confidence 3799999999999 5899999999974
No 138
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=43.28 E-value=65 Score=30.72 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=34.8
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~ 228 (289)
+...||-=|+|+|-|.-+|+++|-.+.+.|..--|.-.-+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~ 69 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLK 69 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHH
Confidence 3678999999999999999999999999999987765433
No 139
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=41.20 E-value=51 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeeeeechhHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 223 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~M 223 (289)
+...||--|+|+|-|..+|+..|=.+.+.|.+--+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~ 64 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDL 64 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhH
Confidence 56789999999999999999999888899988754
No 140
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=40.58 E-value=65 Score=30.56 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCCeEEecCCCchhhHHHHHhh-C-CeeeeechhHHHHHHHHHHhhccCCCCceEE
Q 023006 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNI 242 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-G-f~vqgNEfSy~MLLaS~FILN~~~~~~~~tI 242 (289)
...+||=.|||.|-|+.-+|++ . -.++|.|..--|.-..+=-++....+++++|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v 99 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeE
Confidence 3779999999999999999998 5 7778999998776555333333223344443
No 141
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=40.44 E-value=24 Score=32.71 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=32.1
Q ss_pred CeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhh
Q 023006 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN 232 (289)
-++|-||||-|.|.-.||.+.=.+.+.|.|---+-..+=-+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~ 86 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA 86 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC
Confidence 469999999999999999998788899999877765554443
No 142
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=40.23 E-value=47 Score=31.77 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=32.3
Q ss_pred CCCeEEecCCCchhhHHHHHhh----------CCeeeeechhHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICS 227 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~----------Gf~vqgNEfSy~MLLaS 227 (289)
.++||+..||++|-=+|-||.+ .+.+.|.|.|--++-..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~A 163 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHH
Confidence 4699999999999999999864 26788999998877543
No 143
>PTZ00146 fibrillarin; Provisional
Probab=39.46 E-value=62 Score=31.36 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=42.1
Q ss_pred hhhcCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-C--CeeeeechhHHHH
Q 023006 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMM 224 (289)
Q Consensus 155 ~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-G--f~vqgNEfSy~ML 224 (289)
=+|-|++--.. .-.-|+.-|+.+ .-++..+||==|||.|.++..||.. | =.|.+.|+|.-|+
T Consensus 106 eyR~w~p~rSK----laa~i~~g~~~l----~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~ 170 (293)
T PTZ00146 106 EYRVWNPFRSK----LAAAIIGGVANI----PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG 170 (293)
T ss_pred eeeeeCCcccH----HHHHHHCCccee----ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH
Confidence 38999985433 112244444443 2234568999999999999999987 3 2588999997554
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=39.29 E-value=74 Score=30.83 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=35.0
Q ss_pred eEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHH--HHhhc
Q 023006 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS--FILNH 233 (289)
Q Consensus 192 rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~--FILN~ 233 (289)
+||=-|||.|-++.-||+..-.+.|.|.|.-|+-..+ .-+|.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~ 243 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN 243 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 5999999999999999987668899999999987654 44454
No 145
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=38.11 E-value=20 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=14.4
Q ss_pred CCCeEEec--CCCchhhHHHHHh
Q 023006 189 SPPACLVP--GAGLGRLALEISH 209 (289)
Q Consensus 189 ~~~rVLVP--GsGLGRLA~EIA~ 209 (289)
+-..|.+| |||+|++.++.+.
T Consensus 108 ~~~sIa~P~igtG~~g~~~~~~~ 130 (133)
T smart00506 108 GITSVAIPLIGTGIYGVPKDRSA 130 (133)
T ss_pred CCCEEEECCccCCCCCCCHHHHH
Confidence 34578888 5777777777653
No 146
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=37.56 E-value=33 Score=33.69 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=22.8
Q ss_pred CeEEecCCCchhhHHHH--HhhCCeeeeec
Q 023006 191 PACLVPGAGLGRLALEI--SHLGFISQGNE 218 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EI--A~~Gf~vqgNE 218 (289)
.+|+|=|+|+|.|+.-+ |+.|+.|.--|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE 31 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLE 31 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 46999999999997654 88899987655
No 147
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=37.35 E-value=27 Score=33.97 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=50.7
Q ss_pred HHhhhhhcCCcCChHHHhhhhHHHHHHHHhhCCCC---CCCCCCeEEecCCCchhhHHHHHhhCCee-eeechhHHHHHH
Q 023006 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR---SKESPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMIC 226 (289)
Q Consensus 151 tLkq~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~---~~r~~~rVLVPGsGLGRLA~EIA~~Gf~v-qgNEfSy~MLLa 226 (289)
-+|.+-|||.+--..-.. .++.++|.-.+-++ -.+..+.++-=|||+|.++--|-..|..- .-.|-||-|+--
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 478889999874432221 56666665444322 13466789999999999999998888332 367888888764
Q ss_pred HH
Q 023006 227 SS 228 (289)
Q Consensus 227 S~ 228 (289)
.+
T Consensus 111 ~~ 112 (325)
T KOG2940|consen 111 CR 112 (325)
T ss_pred hh
Confidence 43
No 148
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=36.80 E-value=1.1e+02 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=32.1
Q ss_pred CCCCeEEecCCCchhhHHHHHh------hCCeeeeechhHHHHHH
Q 023006 188 ESPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMIC 226 (289)
Q Consensus 188 r~~~rVLVPGsGLGRLA~EIA~------~Gf~vqgNEfSy~MLLa 226 (289)
.+...|+==|||.|-|+.-||. .+..+.|.|.+-.+.-.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 3667888899999999999998 37888899988776433
No 149
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=36.12 E-value=88 Score=30.27 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-CCeeeeechhHHHHHHHHH
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSF 229 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-Gf~vqgNEfSy~MLLaS~F 229 (289)
.++.+.+.+... +..+||==|||-|-|+.-.|+. |-.|.|..+|--|+--.+=
T Consensus 60 k~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 60 KLDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence 556666655433 5678999999999999999999 9999999999999876654
No 150
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=35.74 E-value=18 Score=29.16 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=10.0
Q ss_pred CCCeEEecCCCch
Q 023006 189 SPPACLVPGAGLG 201 (289)
Q Consensus 189 ~~~rVLVPGsGLG 201 (289)
.=..+||||||--
T Consensus 31 G~sSiiVPGsGe~ 43 (80)
T PF08149_consen 31 GFSSIIVPGSGEP 43 (80)
T ss_pred ceeEEeccCCCCC
Confidence 3457999999964
No 151
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=35.55 E-value=63 Score=31.04 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=51.3
Q ss_pred cCCc----CChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHHHHHHHHh
Q 023006 158 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 158 DWS~----EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~MLLaS~FIL 231 (289)
||++ ..+.||.. |..+ |..++|.. ..-+|+==|||.|-..--|+++ +-.++|.|-|--|+-...=-|
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~d-Lla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl 74 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARD-LLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL 74 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHH-HHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC
Confidence 5775 35677763 5555 44445643 4557888899999999999988 788899999999998876555
Q ss_pred hc
Q 023006 232 NH 233 (289)
Q Consensus 232 N~ 233 (289)
-.
T Consensus 75 p~ 76 (257)
T COG4106 75 PD 76 (257)
T ss_pred CC
Confidence 44
No 152
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=35.54 E-value=30 Score=33.35 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhcCCcCC-------hHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh----CCeee
Q 023006 147 KVRCIIRNIVRDWAAEG-------KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQ 215 (289)
Q Consensus 147 KV~stLkq~vRDWS~EG-------~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~----Gf~vq 215 (289)
++.-..+.-.+=|..=+ -..| .+++.+...++|.... ...+||-=|||.|-..|-|.+- ++.+-
T Consensus 27 ~~~~y~~~~~k~wD~fy~~~~~rFfkdR----~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ 101 (264)
T KOG2361|consen 27 EVVKYEREASKYWDTFYKIHENRFFKDR----NWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVY 101 (264)
T ss_pred hhhhhhcchhhhhhhhhhhccccccchh----HHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEE
Confidence 33344455556666422 1255 3788888888885533 3338999999999999999774 58899
Q ss_pred eechhHHHHHHHHHHhhccCCCCceEEeecccccC
Q 023006 216 GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (289)
Q Consensus 216 gNEfSy~MLLaS~FILN~~~~~~~~tIyPFihs~S 250 (289)
+.|||-=.. ..+-++. ....-..++|+...+
T Consensus 102 acDfsp~Ai---~~vk~~~-~~~e~~~~afv~Dlt 132 (264)
T KOG2361|consen 102 ACDFSPRAI---ELVKKSS-GYDESRVEAFVWDLT 132 (264)
T ss_pred EcCCChHHH---HHHHhcc-ccchhhhcccceecc
Confidence 999996533 3333332 223445566665543
No 153
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.15 E-value=75 Score=31.95 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=38.4
Q ss_pred HHhhhhhcCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHH
Q 023006 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEIS 208 (289)
Q Consensus 151 tLkq~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA 208 (289)
.|+-+.|+|...-..|-...+..+++.|+..|... +...+|++|+|++ |+|.|
T Consensus 20 V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~---~~~~~ll~gsGt~--amEAa 72 (383)
T COG0075 20 VLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTE---NGDVVLLSGSGTL--AMEAA 72 (383)
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCcEEEEcCCcHH--HHHHH
Confidence 45556777777777777788899999999998754 3467888887654 55544
No 154
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=35.11 E-value=69 Score=28.30 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhh
Q 023006 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 174 ILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN 232 (289)
+++.|.+++|.. ...+++=|=||.|-+++.+...|..+..||+...-....+.++.
T Consensus 8 l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 677888888853 45689999999999999998899999999999987777774443
No 155
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=34.84 E-value=42 Score=33.11 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCCeEEecCCCchhh--HHHHHhhCCeeeeech
Q 023006 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (289)
Q Consensus 189 ~~~rVLVPGsGLGRL--A~EIA~~Gf~vqgNEf 219 (289)
...+|+|=|+|.+.| |+.|+++|+.++-.|-
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 567999999999877 6788888999986653
No 156
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=33.72 E-value=61 Score=32.00 Aligned_cols=44 Identities=14% Similarity=-0.055 Sum_probs=36.4
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHHHHhh
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~FILN 232 (289)
+..+||==|||.|.++..++.++ -.+.++|.|..|+-..+--+.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45689999999999999999884 578999999999876654443
No 157
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=33.42 E-value=73 Score=33.16 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=30.5
Q ss_pred CeEEecCCCchhhHHHHHhhCCee-eeechhHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMI 225 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~Gf~v-qgNEfSy~MLL 225 (289)
.++|+.|||.-+|..++-+-||.. ...|+|-.-..
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~ 85 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVA 85 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHH
Confidence 489999999999999999999987 58899876443
No 158
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=33.04 E-value=50 Score=32.67 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCCeEEecCCC-chhhHHHHHh-hCCeeeeechhHH
Q 023006 188 ESPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYY 222 (289)
Q Consensus 188 r~~~rVLVPGsG-LGRLA~EIA~-~Gf~vqgNEfSy~ 222 (289)
++..+|+|-|+| ||.+|..+|+ +|..|.+.+-|--
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~ 201 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE 201 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 456789999886 9999999999 6999988877755
No 159
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=32.39 E-value=15 Score=31.53 Aligned_cols=13 Identities=54% Similarity=0.933 Sum_probs=8.2
Q ss_pred eEEecCCCchhhH
Q 023006 192 ACLVPGAGLGRLA 204 (289)
Q Consensus 192 rVLVPGsGLGRLA 204 (289)
-.+|||+|+|-|+
T Consensus 96 ~~VVPgSGTGeL~ 108 (134)
T PF11528_consen 96 FTVVPGSGTGELA 108 (134)
T ss_dssp EEE-TT--EETTT
T ss_pred EEEeCCCCchhhc
Confidence 5699999999875
No 160
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.16 E-value=73 Score=31.73 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCeEEecCCCc---------------hhhHHHHHh----hCCeeee
Q 023006 170 CYKPILEELDALFPNRSKESPPACLVPGAGL---------------GRLALEISH----LGFISQG 216 (289)
Q Consensus 170 ~y~PILe~L~~~fP~~~~r~~~rVLVPGsGL---------------GRLA~EIA~----~Gf~vqg 216 (289)
.-.-|++++.+.+.....-...+|||-|-+. |++++.||+ +|+.|..
T Consensus 165 ~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 165 EPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred CHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 3345666666665431112456799988754 777777665 4988753
No 161
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=31.67 E-value=91 Score=29.72 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=31.1
Q ss_pred CCCeEEecCCCchhhHHHHHhh-----------CCeeeeechhHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMIC 226 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-----------Gf~vqgNEfSy~MLLa 226 (289)
+.++|...||++|-=+|-||.. .+.+.|-|.|-.+|-.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 5899999999999999999863 2556688888877653
No 162
>PRK07233 hypothetical protein; Provisional
Probab=31.36 E-value=42 Score=31.48 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEecCCCchhh--HHHHHhhCCeee
Q 023006 192 ACLVPGAGLGRL--ALEISHLGFISQ 215 (289)
Q Consensus 192 rVLVPGsGLGRL--A~EIA~~Gf~vq 215 (289)
+|+|=|+|++.| |+.|++.|+.|.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~ 26 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVT 26 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEE
Confidence 588999999999 557888887765
No 163
>PRK03612 spermidine synthase; Provisional
Probab=31.10 E-value=82 Score=32.24 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=34.4
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~ 228 (289)
++.+||+=|+|.|-++.|+++.+ =.++..|.+.-|.=..+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar 338 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELAR 338 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHH
Confidence 35689999999999999999874 47889999999887764
No 164
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=30.98 E-value=2e+02 Score=28.86 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=45.5
Q ss_pred HhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCee-eeechhHHHHHHHHHHhhcc
Q 023006 167 RDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHT 234 (289)
Q Consensus 167 Rd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~v-qgNEfSy~MLLaS~FILN~~ 234 (289)
|-..|.-++-.=+.+| +...||==|||+|=|...-|+.|..- -+.|+|-.+..+..-+....
T Consensus 44 Rt~aYr~~i~~n~~lf------~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 44 RTLAYRNAILQNKHLF------KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG 106 (346)
T ss_pred hHHHHHHHHhcchhhc------CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC
Confidence 3344444443333344 34579999999999999999999554 59999999999988777653
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=30.83 E-value=97 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCeEEecCCCchhhHHHHHh-hCCeeeeechhHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMI 225 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~-~Gf~vqgNEfSy~MLL 225 (289)
+.-|||==|||-|.|..-|.. ++-...|.|.+--...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~ 50 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVA 50 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 356899999999999998876 6888888888766543
No 166
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.47 E-value=60 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=19.2
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeee
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQG 216 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqg 216 (289)
..+|||=|+ |+|+ |+-.+++.|+.|..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~ 35 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVV 35 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 357999986 6666 55556677998864
No 167
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=29.65 E-value=43 Score=35.75 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHH---Hhh---C---CeeeeechhHHHHHHHHH
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEI---SHL---G---FISQGNEFSYYMMICSSF 229 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EI---A~~---G---f~vqgNEfSy~MLLaS~F 229 (289)
.-|+++|..+.|+...+..+.|+|=|+|-|=|+--. |.. - |.++-|=.-+.||.-.+|
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~ 416 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF 416 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch
Confidence 358899999999876656788999999999887544 222 2 677766666666654333
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=29.17 E-value=63 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred CCCCeEEecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhhc
Q 023006 188 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNH 233 (289)
Q Consensus 188 r~~~rVLVPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN~ 233 (289)
+....||=|=||+|....|....|..+-|+|.+.-|+.-..--|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~ 241 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY 241 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh
Confidence 4556899999999999999999999999999999999886655554
No 169
>PLN02529 lysine-specific histone demethylase 1
Probab=28.63 E-value=62 Score=35.04 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.3
Q ss_pred CCCeEEecCCCchhhHH--HHHhhCCeeeeechh
Q 023006 189 SPPACLVPGAGLGRLAL--EISHLGFISQGNEFS 220 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~--EIA~~Gf~vqgNEfS 220 (289)
.+.+|+|.|+|.+.|+. .++++|+.|.--|-+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~ 192 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR 192 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Confidence 45689999999999954 556679998765543
No 170
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=28.61 E-value=55 Score=33.76 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCCCeEEecCCCchhh--HHHHHhhCCeeeeechh
Q 023006 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (289)
Q Consensus 188 r~~~rVLVPGsGLGRL--A~EIA~~Gf~vqgNEfS 220 (289)
.+...|+|=|+||-.| |+|+-+.||+|+-+|..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar 39 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR 39 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc
Confidence 3567899999999998 57889999999988865
No 171
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.47 E-value=56 Score=29.48 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.4
Q ss_pred CeEEecCC----Cchh-hHHHHHhhCCeeeeec
Q 023006 191 PACLVPGA----GLGR-LALEISHLGFISQGNE 218 (289)
Q Consensus 191 ~rVLVPGs----GLGR-LA~EIA~~Gf~vqgNE 218 (289)
..+||-|+ |+|| +|..+|+.|+.+....
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~ 39 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTY 39 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEe
Confidence 47899997 5776 7888888899886543
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=28.36 E-value=97 Score=31.20 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSS 228 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS~ 228 (289)
++.+||+=|+|.|-++.|+.+.+ =.++..|.+--|+-+.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr 191 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMAR 191 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Confidence 34589999999999999999864 57889999999887665
No 173
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=28.26 E-value=65 Score=29.25 Aligned_cols=57 Identities=26% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh--CC--------eeeeechhHHHHHHHHHHhh
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GF--------ISQGNEFSYYMMICSSFILN 232 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~--Gf--------~vqgNEfSy~MLLaS~FILN 232 (289)
+|++.++..- ....+.+|+-=|+|-|+|+.+|.+. .+ ...-.|.|-.|--.-.-.|.
T Consensus 5 ~~~~~~~~~~---~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 5 WIAQMWEQLG---RPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHCT-----SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred HHHHHHHHcC---CCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5677777752 1124589999999999999999763 22 44567877666544444443
No 174
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=28.21 E-value=71 Score=28.41 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred CeEEecCCCchhhHHHHHhh--CCeeeeechhHHHH
Q 023006 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM 224 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~ML 224 (289)
..+|==|||.|+...++|++ +...-|.|.+.--+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v 54 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV 54 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH
Confidence 37888999999999999998 78888999876544
No 175
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=27.98 E-value=34 Score=24.82 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=22.3
Q ss_pred eEEecCCCchhhHHHHHhhCCee--eeechhHHHH
Q 023006 192 ACLVPGAGLGRLALEISHLGFIS--QGNEFSYYMM 224 (289)
Q Consensus 192 rVLVPGsGLGRLA~EIA~~Gf~v--qgNEfSy~ML 224 (289)
-+-.||||+-|-.+.+.+.-|.. .-|=+.+.++
T Consensus 9 G~~CPgCG~tRa~~~ll~gd~~~A~~~np~~~~~~ 43 (52)
T PF10825_consen 9 GIPCPGCGMTRAFIALLHGDFAAAFRYNPLGLLLL 43 (52)
T ss_pred CCCCCCCcHHHHHHHHHCCCHHHHHHHCcHHHHHH
Confidence 35689999999999997765443 2444444443
No 176
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=27.97 E-value=2.4e+02 Score=26.33 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh-C--CeeeeechhHHHHHHHHHHhhcc
Q 023006 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHT 234 (289)
Q Consensus 172 ~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~-G--f~vqgNEfSy~MLLaS~FILN~~ 234 (289)
..||.+|....|+- .+.+||==|||.|--+|-+... + ..+...|-|-.|+-....|+...
T Consensus 19 ~~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 35889999888753 4568999999999877765543 3 55679999999999999999865
No 177
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.83 E-value=1.3e+02 Score=29.57 Aligned_cols=44 Identities=32% Similarity=0.448 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhCCCCCC-CCCCeEEecC--CCchh-hHHHHHhhCCee
Q 023006 171 YKPILEELDALFPNRSK-ESPPACLVPG--AGLGR-LALEISHLGFIS 214 (289)
Q Consensus 171 y~PILe~L~~~fP~~~~-r~~~rVLVPG--sGLGR-LA~EIA~~Gf~v 214 (289)
|.-++..+..++|.... -..-.||+=| +|||| +|.|+|++|..+
T Consensus 18 ~~~~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 18 LALLESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKL 65 (300)
T ss_pred HHHHHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeE
Confidence 44455555555554321 2556788876 57888 589999999865
No 178
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=27.39 E-value=1.3e+02 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=18.9
Q ss_pred CeEEecCC--CchhhHHHHHhh-CCeee
Q 023006 191 PACLVPGA--GLGRLALEISHL-GFISQ 215 (289)
Q Consensus 191 ~rVLVPGs--GLGRLA~EIA~~-Gf~vq 215 (289)
..|+-=|| |..+||..-|+. |..+.
T Consensus 34 ~~lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 34 MVLVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 44666777 999999999865 76554
No 179
>PRK07577 short chain dehydrogenase; Provisional
Probab=26.70 E-value=77 Score=26.99 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=17.9
Q ss_pred CeEEecCC--Cchh-hHHHHHhhCCeeee
Q 023006 191 PACLVPGA--GLGR-LALEISHLGFISQG 216 (289)
Q Consensus 191 ~rVLVPGs--GLGR-LA~EIA~~Gf~vqg 216 (289)
..|||-|+ |+|+ ++..++++|+.+..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~ 32 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIG 32 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 46899996 5666 55556677987754
No 180
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=26.07 E-value=2.4e+02 Score=25.59 Aligned_cols=49 Identities=12% Similarity=-0.046 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhh---CCeeeeechhHHHHHHH
Q 023006 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICS 227 (289)
Q Consensus 173 PILe~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~---Gf~vqgNEfSy~MLLaS 227 (289)
.+|..|.+.. +..+||--|+|.|--+..||+. +-.+.+.|.+--++-..
T Consensus 58 ~~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A 109 (234)
T PLN02781 58 LFLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109 (234)
T ss_pred HHHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 4555565543 3458999999999988888764 35788999998776544
No 181
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=25.98 E-value=2.8e+02 Score=25.16 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=38.0
Q ss_pred HHHHHHHhhh--hhcCCcC-ChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCCCchh--hHHHHHhhCCeeee
Q 023006 146 DKVRCIIRNI--VRDWAAE-GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGR--LALEISHLGFISQG 216 (289)
Q Consensus 146 dKV~stLkq~--vRDWS~E-G~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGR--LA~EIA~~Gf~vqg 216 (289)
.+..++|+.+ ..|+-++ +..|- ++++|....+ ...+||+|.+..|| |.-.|..+|+.+.-
T Consensus 87 ~~Ta~~l~~~G~~~~~~p~~~~~~~------l~~~l~~~~~-----~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 87 EKTAEALRKLGIKVDFIPEDGDSEG------LLEELPELLK-----GGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred HHHHHHHHHhCCCCCcCCCccchHH------HHHHhhhhcc-----CCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 3455555542 3555543 33332 5555655432 25689999999999 88888899966653
No 182
>PLN02672 methionine S-methyltransferase
Probab=25.74 E-value=98 Score=35.19 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=33.0
Q ss_pred CeEEecCCCchhhHHHHHhhC--CeeeeechhHHHHHHH
Q 023006 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICS 227 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~~G--f~vqgNEfSy~MLLaS 227 (289)
.+||=-|||.|.++..+|+.+ -.+.|.|.|--|+-..
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 489999999999999999874 6789999999999666
No 183
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=25.74 E-value=1.1e+02 Score=29.02 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=49.9
Q ss_pred CCCCCCCcccCCCCCCch---HHHHHHHhhhhhcCCc------CChHHHhh------------------------hhHHH
Q 023006 128 ACDWLDPSIQLNVPLADV---DKVRCIIRNIVRDWAA------EGKTERDQ------------------------CYKPI 174 (289)
Q Consensus 128 ~~~w~~ps~~~~v~~~D~---dKV~stLkq~vRDWS~------EG~~ERd~------------------------~y~PI 174 (289)
++.|...+. +..|-.|+ .+.......+-.=|.. ||+.-|-- -|.-|
T Consensus 80 ~~~~Y~~tf-isRpY~d~~dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I 158 (225)
T PF08759_consen 80 PGKWYGSTF-ISRPYIDYKDKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEI 158 (225)
T ss_pred ccceeccee-eeeeeeecccchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHH
Confidence 556666554 44455444 4444444444445653 66555532 35667
Q ss_pred HHHHHhhCCCCCCCCCCeEEecCCCchhhHHHHHhhCCeee
Q 023006 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQ 215 (289)
Q Consensus 175 Le~L~~~fP~~~~r~~~rVLVPGsGLGRLA~EIA~~Gf~vq 215 (289)
++++.++ ....+-+|.=|.=.-=|||+|+++||++-
T Consensus 159 ~~~i~~~-----~~~~LiLiaLGPTAtVLayDL~~~G~qai 194 (225)
T PF08759_consen 159 LEAIKKY-----AKDKLILIALGPTATVLAYDLSKLGYQAI 194 (225)
T ss_pred HHHHHHh-----CCCcEEEEecCCcchhhHHHHHhcCCeeE
Confidence 7777765 12344455567777789999999999884
No 184
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.75 E-value=77 Score=31.81 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEecCCCchhhHHH--HHhhCCeeeeec
Q 023006 190 PPACLVPGAGLGRLALE--ISHLGFISQGNE 218 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~E--IA~~Gf~vqgNE 218 (289)
...|+|=|+|+|.|+-- ||++|++|.=-|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEE
Confidence 35699999999999765 488899997655
No 185
>PRK07208 hypothetical protein; Provisional
Probab=24.30 E-value=74 Score=30.95 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCeEEecCCCchhh--HHHHHhhCCeeeeec
Q 023006 190 PPACLVPGAGLGRL--ALEISHLGFISQGNE 218 (289)
Q Consensus 190 ~~rVLVPGsGLGRL--A~EIA~~Gf~vqgNE 218 (289)
..+|+|=|+|+..| |+.|+++|+.|.-.|
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E 34 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLE 34 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 44699999999999 568888898876544
No 186
>PRK05855 short chain dehydrogenase; Validated
Probab=24.16 E-value=1.8e+02 Score=28.22 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=38.2
Q ss_pred CchHHHHHHHhhhhhcCCcCChHHHhhhhHHHHHHHHhhCCCCCCCCCCeEEecCC--Cchh-hHHHHHhhCCeeeeec
Q 023006 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGA--GLGR-LALEISHLGFISQGNE 218 (289)
Q Consensus 143 ~D~dKV~stLkq~vRDWS~EG~~ERd~~y~PILe~L~~~fP~~~~r~~~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNE 218 (289)
.+-+.+.+.|..|++.+.. +...|. ........ ....-...++||=|+ |+|+ ++.++++.|+.+....
T Consensus 276 e~p~~~~~~i~~fl~~~~~-~~~~~~-----~~~~~~~~--~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~ 346 (582)
T PRK05855 276 SHPQVLAAAVAEFVDAVEG-GPPARA-----LLRARVGR--PRGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASD 346 (582)
T ss_pred hChhHHHHHHHHHHHhccC-CCchHH-----HHHhhhcc--ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 3446777888888877553 222222 11111111 111113457888886 7777 6777788899886543
No 187
>PRK05884 short chain dehydrogenase; Provisional
Probab=24.08 E-value=58 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=18.5
Q ss_pred eEEecCC--Cchh-hHHHHHhhCCeeeee
Q 023006 192 ACLVPGA--GLGR-LALEISHLGFISQGN 217 (289)
Q Consensus 192 rVLVPGs--GLGR-LA~EIA~~Gf~vqgN 217 (289)
+|||-|+ |+|| ++-.+++.|+.+...
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~ 30 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLV 30 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEE
Confidence 5888886 6666 666666779888644
No 188
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=23.97 E-value=97 Score=26.98 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeeeechh
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQGNEFS 220 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNEfS 220 (289)
..+|||-|+ |+|+ |+..++++|+.+....-+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 347899885 4555 555566679988755443
No 189
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.94 E-value=91 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred CeEEecCC--Cchh-hHHHHHhhCCeeeeechh
Q 023006 191 PACLVPGA--GLGR-LALEISHLGFISQGNEFS 220 (289)
Q Consensus 191 ~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNEfS 220 (289)
.+|||-|+ |+|+ |+..++++|+.+..-.-+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899986 5666 555556679988754433
No 190
>PRK12742 oxidoreductase; Provisional
Probab=23.91 E-value=80 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.8
Q ss_pred CeEEecCC--Cchh-hHHHHHhhCCeee
Q 023006 191 PACLVPGA--GLGR-LALEISHLGFISQ 215 (289)
Q Consensus 191 ~rVLVPGs--GLGR-LA~EIA~~Gf~vq 215 (289)
.+|||-|+ |+|+ ++..++..|+.+.
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~ 34 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVR 34 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 47899985 6776 5555667798875
No 191
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.90 E-value=96 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=18.6
Q ss_pred CeEEecCCCchhhHHHHHh----hCCeeeee
Q 023006 191 PACLVPGAGLGRLALEISH----LGFISQGN 217 (289)
Q Consensus 191 ~rVLVPGsGLGRLA~EIA~----~Gf~vqgN 217 (289)
.+|||-|++ |+++..+|+ .|+.|.+.
T Consensus 6 ~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 6 KKVAIIGVS-EGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred cEEEEECCC-chHHHHHHHHHHHCCCEEEEE
Confidence 489999985 666666664 49887643
No 192
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.85 E-value=1e+02 Score=30.58 Aligned_cols=46 Identities=15% Similarity=-0.052 Sum_probs=36.7
Q ss_pred CCCeEEecCCCchhhHHHHHhhCC-eeeeechhHHHHHHH--HHHhhcc
Q 023006 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS--SFILNHT 234 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf-~vqgNEfSy~MLLaS--~FILN~~ 234 (289)
+..+||==|||.|.++...+..|- .+.+.|.|--|+-.. |+-+|..
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl 268 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL 268 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 345899999999999988877775 788999998888654 6666653
No 193
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=23.77 E-value=48 Score=34.23 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=31.2
Q ss_pred ecCCCchhhHHHHHhhCCeeeeechhHHHHHHHHHHhhcc
Q 023006 195 VPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (289)
Q Consensus 195 VPGsGLGRLA~EIA~~Gf~vqgNEfSy~MLLaS~FILN~~ 234 (289)
+=|.|.+.||.=+..+||.|+|-|..-+- ....+.+.+
T Consensus 15 IgG~GMsglA~iL~~~G~~VsGSD~~~~~--~t~~L~~~G 52 (459)
T COG0773 15 IGGIGMSGLAEILLNLGYKVSGSDLAESP--MTQRLEALG 52 (459)
T ss_pred eccccHHHHHHHHHhCCCceECccccccH--HHHHHHHCC
Confidence 67999999999999999999999887655 555666553
No 194
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=23.66 E-value=5.7e+02 Score=24.92 Aligned_cols=97 Identities=15% Similarity=0.010 Sum_probs=59.6
Q ss_pred HHHHHhhhhhcCCcCChHHHhh--hhHHHHHHHHhhCCCCCCCCCCeEEecCCCchhh------HHHHHhhCCeeeeech
Q 023006 148 VRCIIRNIVRDWAAEGKTERDQ--CYKPILEELDALFPNRSKESPPACLVPGAGLGRL------ALEISHLGFISQGNEF 219 (289)
Q Consensus 148 V~stLkq~vRDWS~EG~~ERd~--~y~PILe~L~~~fP~~~~r~~~rVLVPGsGLGRL------A~EIA~~Gf~vqgNEf 219 (289)
=.....+|++ .+|+=.=|.. .++--..+|.+.+| ....||-.|||-||= +.+-+..++.-.+.|.
T Consensus 40 Gs~LFe~It~--lpEYYptr~E~~iL~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI 112 (319)
T TIGR03439 40 GLKLFEEITY--SPEYYLTNDEIEILKKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDV 112 (319)
T ss_pred HHHHHHHHHc--CCccCChHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3444556664 4555333332 34444445555554 234788999999997 4442333577789999
Q ss_pred hHHHHHHHHHHhhccCCCCceEEeecccccCCc
Q 023006 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (289)
Q Consensus 220 Sy~MLLaS~FILN~~~~~~~~tIyPFihs~SN~ 252 (289)
|--+|-.+.=-|.. ..-..++|.|.+-.|..-
T Consensus 113 S~~~L~~a~~~L~~-~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 113 SRSELQRTLAELPL-GNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CHHHHHHHHHhhhh-ccCCCeEEEEEEecHHHH
Confidence 98888766555541 122358899998888554
No 195
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.60 E-value=93 Score=26.50 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=18.4
Q ss_pred CeEEecCC--Cchh-hHHHHHhhCCeeee
Q 023006 191 PACLVPGA--GLGR-LALEISHLGFISQG 216 (289)
Q Consensus 191 ~rVLVPGs--GLGR-LA~EIA~~Gf~vqg 216 (289)
.+|||=|+ |+|+ ||.+++++|+.+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIV 35 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 47899995 5555 45556667998866
No 196
>PRK06125 short chain dehydrogenase; Provisional
Probab=23.47 E-value=92 Score=27.28 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=20.4
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeeeechh
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQGNEFS 220 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNEfS 220 (289)
...|||-|+ |+|+ ++..++..|+.+....-+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 357899995 5665 445556679988765443
No 197
>PRK06523 short chain dehydrogenase; Provisional
Probab=23.36 E-value=1.3e+02 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=17.4
Q ss_pred CCCeEEecCC--Cchh-hHHHHHhhCCeeee
Q 023006 189 SPPACLVPGA--GLGR-LALEISHLGFISQG 216 (289)
Q Consensus 189 ~~~rVLVPGs--GLGR-LA~EIA~~Gf~vqg 216 (289)
...+|||-|+ |+|+ ++..+++.|+.+..
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~ 38 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGARVVT 38 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCEEEE
Confidence 3457999995 4444 33444556988753
No 198
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.27 E-value=80 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=18.7
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeeeec
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQGNE 218 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNE 218 (289)
..+|||-|+ |+|+ ++..+++.|+.+....
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 357999996 4444 4444556699886543
No 199
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=23.19 E-value=74 Score=29.33 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEecCCCchhh--HHHHHhhCCeeeeechh
Q 023006 193 CLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (289)
Q Consensus 193 VLVPGsGLGRL--A~EIA~~Gf~vqgNEfS 220 (289)
|+|=|+|.+.| |+.|++.|+.|.-.|=+
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 78899999987 55567779988754433
No 200
>PRK07236 hypothetical protein; Provisional
Probab=22.30 E-value=94 Score=29.39 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCCeEEecCCCchhhH--HHHHhhCCeeeeechh
Q 023006 189 SPPACLVPGAGLGRLA--LEISHLGFISQGNEFS 220 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA--~EIA~~Gf~vqgNEfS 220 (289)
...+|+|=|+|.+.|+ ..|++.|+.|.-.|-+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 4578999999999865 5566779998766643
No 201
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=22.20 E-value=55 Score=25.23 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=5.0
Q ss_pred chHHHHHHHh
Q 023006 2 NSYFIFAMLQ 11 (289)
Q Consensus 2 n~~fi~~ml~ 11 (289)
|-||+||.|.
T Consensus 10 nPHFl~NtLn 19 (82)
T PF06580_consen 10 NPHFLFNTLN 19 (82)
T ss_pred ChHHHHHHHH
Confidence 4455555544
No 202
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=21.87 E-value=1.3e+02 Score=29.80 Aligned_cols=43 Identities=9% Similarity=-0.202 Sum_probs=34.2
Q ss_pred CCCeEEecCCCchhhHHHHHhh---CCeeeeechhHHHHHHHHHHh
Q 023006 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFIL 231 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~---Gf~vqgNEfSy~MLLaS~FIL 231 (289)
+..+||=-|||.|..+..+|.+ +-.+.++|.|-.|+-..+-.+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 295 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA 295 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence 4468999999999998888764 458999999999996554333
No 203
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=21.76 E-value=1.5e+02 Score=24.17 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=13.3
Q ss_pred CeEEec--CCCchhhHHHHHh
Q 023006 191 PACLVP--GAGLGRLALEISH 209 (289)
Q Consensus 191 ~rVLVP--GsGLGRLA~EIA~ 209 (289)
..|-+| |||.|++.++.+.
T Consensus 105 ~sIA~P~igtG~~g~~~~~~a 125 (133)
T cd03330 105 ESVAFPAMGTGVGGLPKEDVA 125 (133)
T ss_pred CEEEECcccccCCCCCHHHHH
Confidence 368888 5677777777654
No 204
>PRK06500 short chain dehydrogenase; Provisional
Probab=21.73 E-value=1.1e+02 Score=26.34 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=19.3
Q ss_pred CeEEecCC--Cchh-hHHHHHhhCCeeeeec
Q 023006 191 PACLVPGA--GLGR-LALEISHLGFISQGNE 218 (289)
Q Consensus 191 ~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNE 218 (289)
.+|||-|+ |+|+ |+-++++.|+.+....
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITG 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 47999995 5666 5555667798886443
No 205
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=21.46 E-value=1e+02 Score=27.49 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.3
Q ss_pred EEecCCCchhh--HHHHHhhCCeeeeechh
Q 023006 193 CLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (289)
Q Consensus 193 VLVPGsGLGRL--A~EIA~~Gf~vqgNEfS 220 (289)
|+|=|+|...| |++|+++|+.|+-.|-.
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 78889999875 78999999999876655
No 206
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.42 E-value=87 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=22.7
Q ss_pred CeEEecCCCchhhH--HHHHhhCCeeeeech
Q 023006 191 PACLVPGAGLGRLA--LEISHLGFISQGNEF 219 (289)
Q Consensus 191 ~rVLVPGsGLGRLA--~EIA~~Gf~vqgNEf 219 (289)
..|+|=|+|.+.|+ ..|++.|+.|.-.|-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDG 33 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcC
Confidence 36999999999985 555677999986664
No 207
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=21.06 E-value=3.4e+02 Score=25.11 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=28.9
Q ss_pred CCCeEEecCCCchhhHHHHHhh--CCeeeeechhHHHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM 224 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~--Gf~vqgNEfSy~ML 224 (289)
+..+||=-|||.|.++.+++++ +-.+.+.|.. .|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~-~~~ 185 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP-GAI 185 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecH-HHH
Confidence 4569999999999999999998 4678888985 444
No 208
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=20.97 E-value=88 Score=30.94 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.7
Q ss_pred eEEecCCCchhh--HHHHHhhCCeeeeech
Q 023006 192 ACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (289)
Q Consensus 192 rVLVPGsGLGRL--A~EIA~~Gf~vqgNEf 219 (289)
.|+|=|+|++.| |+.|++.|..|.-.|=
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk 32 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEK 32 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 588999998877 5577888988876653
No 209
>PLN02823 spermine synthase
Probab=20.90 E-value=2.3e+02 Score=27.73 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCCeEEecCCCchhhHHHHHhh-CC-eeeeechhHHHHHHH-HHH
Q 023006 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICS-SFI 230 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~-Gf-~vqgNEfSy~MLLaS-~FI 230 (289)
++.+|||=|.|.|.++.|+.+. +. .++..|.+.-++=.. .|.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~ 147 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL 147 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc
Confidence 3458999999999999999885 33 578999998776554 443
No 210
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=20.75 E-value=1.2e+02 Score=34.43 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.8
Q ss_pred CCCCeEEecCCCchhh--HHHHHhhCCeeeeec
Q 023006 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNE 218 (289)
Q Consensus 188 r~~~rVLVPGsGLGRL--A~EIA~~Gf~vqgNE 218 (289)
....+|+|=|+|-+.| |+.|+++|+.|+..|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E 413 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID 413 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence 3567999999999876 788999999998877
No 211
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.71 E-value=1.5e+02 Score=29.52 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhhCCCCCCCCCCeEEecCC---------------CchhhHHHHHh----hCCeee
Q 023006 168 DQCYKPILEELDALFPNRSKESPPACLVPGA---------------GLGRLALEISH----LGFISQ 215 (289)
Q Consensus 168 d~~y~PILe~L~~~fP~~~~r~~~rVLVPGs---------------GLGRLA~EIA~----~Gf~vq 215 (289)
-+--.-|++.+.+.+...+ -...+|||-|. ..|++++.||+ +|+.|.
T Consensus 167 ~~~~~~I~~~~~~~~~~~~-l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~ 232 (399)
T PRK05579 167 MAEPEEIVAAAERALSPKD-LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVT 232 (399)
T ss_pred CCCHHHHHHHHHHHhhhcc-cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEE
Confidence 3344457777776663221 24568999997 36776666654 598885
No 212
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=20.65 E-value=1.9e+02 Score=25.21 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCCeEEecCCCchhhHHHHHhhCCeee-----------eechhHHHHHHHHHHhhcc
Q 023006 189 SPPACLVPGAGLGRLALEISHLGFISQ-----------GNEFSYYMMICSSFILNHT 234 (289)
Q Consensus 189 ~~~rVLVPGsGLGRLA~EIA~~Gf~vq-----------gNEfSy~MLLaS~FILN~~ 234 (289)
+...||=|=||.|-+..|.|..|..+. |.|.+.-|+-..+--+...
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a 84 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA 84 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc
Confidence 456799999999999999999875544 9999999988776666543
No 213
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=20.45 E-value=74 Score=27.96 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCCCceEEeecccccCCcCCcc
Q 023006 235 ETAGEWNIYPWIHSNCNSLSDS 256 (289)
Q Consensus 235 ~~~~~~tIyPFihs~SN~~s~e 256 (289)
.+++.+.||||+|=.|+..+.+
T Consensus 70 v~~~~ivlyPyAHLSs~La~P~ 91 (138)
T PF08915_consen 70 VKAKRIVLYPYAHLSSSLASPD 91 (138)
T ss_dssp TT-SEEEEEE-GGGSSSB--HH
T ss_pred cCCCEEEEeCcccccCCcCChH
Confidence 4678999999999988876543
No 214
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=20.39 E-value=3.9e+02 Score=26.48 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=34.4
Q ss_pred CCeEEecCCCchhhHHHHHhh-CC-eeeeechhHHHH--HHHHHHhhcc
Q 023006 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMM--ICSSFILNHT 234 (289)
Q Consensus 190 ~~rVLVPGsGLGRLA~EIA~~-Gf-~vqgNEfSy~ML--LaS~FILN~~ 234 (289)
..+||=.+||.|-++..+|+. |. .|.+||.+--.+ +-.|.-+|..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 457999999999999999876 53 688999986555 4445566653
No 215
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.34 E-value=1e+02 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=17.9
Q ss_pred CCeEEecCCC----chh-hHHHHHhhCCeeee
Q 023006 190 PPACLVPGAG----LGR-LALEISHLGFISQG 216 (289)
Q Consensus 190 ~~rVLVPGsG----LGR-LA~EIA~~Gf~vqg 216 (289)
..+|||-|++ +|+ +|..++..|+.+..
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~ 37 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFF 37 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEE
Confidence 4579999984 554 34455566988754
No 216
>PRK07985 oxidoreductase; Provisional
Probab=20.30 E-value=75 Score=29.07 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=16.9
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeee
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQG 216 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqg 216 (289)
..+|||-|+ |+|+ +|..|++.|+.+..
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 357999995 4444 33344456998864
No 217
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.01 E-value=1.3e+02 Score=26.88 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=21.3
Q ss_pred CCeEEecCC--Cchh-hHHHHHhhCCeeeeechh
Q 023006 190 PPACLVPGA--GLGR-LALEISHLGFISQGNEFS 220 (289)
Q Consensus 190 ~~rVLVPGs--GLGR-LA~EIA~~Gf~vqgNEfS 220 (289)
...+||=|+ |+|+ +|..+++.|+.+....-+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 346889886 5666 666667789998754433
Done!