Query 023008
Match_columns 288
No_of_seqs 166 out of 606
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.3 5E-12 1.7E-16 98.6 6.4 93 2-100 3-100 (101)
2 2dja_A Midline-2; tripartite m 96.7 0.001 3.5E-08 49.9 3.4 60 39-104 2-63 (84)
3 2yvr_A Transcription intermedi 96.3 0.002 6.8E-08 44.0 2.3 42 55-102 7-48 (50)
4 2did_A Tripartite motif protei 96.2 0.0036 1.2E-07 43.3 3.3 43 54-103 8-51 (53)
5 3ddt_A E3 ubiquitin-protein li 95.9 0.0045 1.5E-07 42.0 2.8 42 53-100 5-47 (48)
6 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0043 1.5E-07 47.6 3.0 43 55-97 4-49 (101)
7 2d8u_A Ubiquitin ligase TRIM63 95.9 0.0031 1E-07 44.9 2.0 45 54-104 8-53 (64)
8 2ffw_A Midline-1; B-BOX, ring 95.8 0.0065 2.2E-07 45.8 3.5 44 2-45 30-76 (78)
9 2csv_A Tripartite motif protei 95.6 0.0058 2E-07 44.8 2.5 58 39-104 4-61 (72)
10 2yrg_A Tripartite motif-contai 95.1 0.012 4.1E-07 41.9 2.8 42 55-103 15-57 (59)
11 1fre_A Nuclear factor XNF7; zi 95.1 0.0081 2.8E-07 39.4 1.7 31 55-86 4-35 (42)
12 2egm_A Tripartite motif-contai 93.5 0.028 9.6E-07 39.7 1.7 33 53-86 17-50 (57)
13 2ffw_A Midline-1; B-BOX, ring 88.0 0.2 7E-06 37.5 1.8 45 53-97 29-76 (78)
14 2d8v_A Zinc finger FYVE domain 82.4 1.5 5.2E-05 32.7 4.2 48 53-102 7-55 (67)
15 2did_A Tripartite motif protei 81.2 1.4 4.9E-05 29.9 3.4 40 4-50 10-50 (53)
16 2d8v_A Zinc finger FYVE domain 77.1 2.6 8.7E-05 31.5 3.9 46 2-49 8-54 (67)
17 2yvr_A Transcription intermedi 76.5 2.6 9E-05 28.1 3.6 41 4-50 8-48 (50)
18 2yrg_A Tripartite motif-contai 71.8 3.9 0.00013 28.6 3.6 40 4-50 16-56 (59)
19 2d8u_A Ubiquitin ligase TRIM63 69.0 3.8 0.00013 28.5 3.1 42 4-51 10-52 (64)
20 2dja_A Midline-2; tripartite m 67.0 6.3 0.00022 28.8 4.1 41 4-50 20-61 (84)
21 2fc7_A ZZZ3 protein; structure 67.0 8.4 0.00029 29.2 4.9 47 54-100 21-74 (82)
22 2xzl_A ATP-dependent helicase 66.4 1.9 6.7E-05 44.6 1.5 81 2-82 11-106 (802)
23 4hc9_A Trans-acting T-cell-spe 61.7 4.7 0.00016 32.5 2.7 85 2-87 5-95 (115)
24 2yqq_A Zinc finger HIT domain- 56.9 6.2 0.00021 28.3 2.3 30 4-35 14-44 (56)
25 1tot_A CREB-binding protein; z 55.4 4.4 0.00015 28.2 1.3 30 2-31 6-37 (52)
26 2egm_A Tripartite motif-contai 55.2 9.3 0.00032 26.5 3.0 30 4-34 20-50 (57)
27 2jne_A Hypothetical protein YF 50.8 6.9 0.00024 31.3 1.9 10 1-10 31-40 (101)
28 1x4s_A Protein FON, zinc finge 50.6 6.4 0.00022 28.6 1.6 31 3-34 12-46 (59)
29 3ddt_A E3 ubiquitin-protein li 49.1 15 0.00051 24.2 3.1 31 11-47 15-46 (48)
30 1z60_A TFIIH basal transcripti 48.9 4.2 0.00014 29.4 0.3 32 56-87 17-51 (59)
31 1z60_A TFIIH basal transcripti 48.9 5.5 0.00019 28.8 0.9 32 4-35 17-51 (59)
32 2wjy_A Regulator of nonsense t 48.4 5.7 0.0002 41.2 1.4 81 2-82 6-101 (800)
33 2fc7_A ZZZ3 protein; structure 48.2 12 0.0004 28.3 2.8 31 2-32 21-58 (82)
34 1fre_A Nuclear factor XNF7; zi 45.1 5.3 0.00018 25.5 0.3 26 4-30 5-30 (42)
35 2e5r_A Dystrobrevin alpha; ZZ 43.6 22 0.00075 25.5 3.5 30 3-32 12-45 (63)
36 1weo_A Cellulose synthase, cat 42.3 8.6 0.00029 30.3 1.2 31 53-83 15-52 (93)
37 2csv_A Tripartite motif protei 41.4 17 0.0006 25.8 2.7 39 4-49 20-58 (72)
38 2olm_A Nucleoporin-like protei 40.2 19 0.00066 29.8 3.1 32 3-35 26-57 (140)
39 2ctu_A Zinc finger protein 483 38.9 24 0.00081 23.3 3.0 37 20-60 37-73 (73)
40 2jrp_A Putative cytoplasmic pr 38.6 12 0.00042 28.6 1.5 25 1-29 1-25 (81)
41 2epr_A POZ-, at HOOK-, and zin 35.3 9.5 0.00033 23.9 0.4 37 21-61 11-47 (48)
42 2dip_A Zinc finger SWIM domain 35.2 25 0.00086 27.4 2.9 29 3-31 32-64 (98)
43 2e5r_A Dystrobrevin alpha; ZZ 34.1 36 0.0012 24.3 3.4 41 55-95 12-56 (63)
44 2pv0_B DNA (cytosine-5)-methyl 33.6 28 0.00097 33.5 3.5 73 1-83 49-124 (386)
45 2ysm_A Myeloid/lymphoid or mix 33.0 51 0.0018 25.3 4.4 16 72-87 67-82 (111)
46 1qxf_A GR2, 30S ribosomal prot 32.8 14 0.00047 27.5 0.9 28 1-29 6-33 (66)
47 3j20_W 30S ribosomal protein S 30.4 16 0.00056 26.8 1.0 28 1-29 14-41 (63)
48 2lri_C Autoimmune regulator; Z 29.0 72 0.0025 22.9 4.3 46 3-62 13-58 (66)
49 2xzm_6 RPS27E; ribosome, trans 27.7 19 0.00066 27.6 1.0 28 1-29 31-58 (81)
50 2owa_A Arfgap-like finger doma 27.7 36 0.0012 28.2 2.8 36 3-42 37-72 (138)
51 2iqj_A Stromal membrane-associ 26.8 36 0.0012 28.0 2.6 36 4-43 29-64 (134)
52 2yqq_A Zinc finger HIT domain- 25.1 33 0.0011 24.4 1.8 23 55-78 13-35 (56)
53 3pfq_A PKC-B, PKC-beta, protei 25.1 38 0.0013 33.8 2.9 31 53-83 112-147 (674)
54 2crr_A Stromal membrane-associ 24.5 34 0.0012 28.3 2.1 36 4-43 31-66 (141)
55 3sub_A ADP-ribosylation factor 23.5 45 0.0016 28.6 2.7 36 4-43 24-59 (163)
56 3a1b_A DNA (cytosine-5)-methyl 23.1 1.1E+02 0.0036 26.1 4.9 72 2-83 36-110 (159)
57 2epq_A POZ-, at HOOK-, and zin 23.0 12 0.00042 22.8 -0.8 37 21-61 9-45 (45)
58 2lbm_A Transcriptional regulat 22.8 1.1E+02 0.0039 25.3 5.0 72 2-82 14-91 (142)
59 2ytg_A ZFP-95, zinc finger pro 22.3 30 0.001 21.0 1.0 36 21-60 11-46 (46)
60 2crw_A ARF GAP 3, ADP-ribosyla 22.0 41 0.0014 28.3 2.1 37 3-43 30-66 (149)
61 2em7_A Zinc finger protein 224 21.5 17 0.00056 22.3 -0.4 36 21-60 11-46 (46)
62 2epz_A Zinc finger protein 28 21.4 19 0.00066 21.9 -0.1 36 21-60 11-46 (46)
63 2emf_A Zinc finger protein 484 21.2 18 0.00061 22.2 -0.3 36 21-60 11-46 (46)
64 4gne_A Histone-lysine N-methyl 20.8 2.1E+02 0.0071 22.4 5.9 26 57-83 61-86 (107)
65 2ytq_A Zinc finger protein 268 20.6 17 0.0006 22.2 -0.4 36 21-60 11-46 (46)
66 2ku3_A Bromodomain-containing 20.4 58 0.002 23.7 2.4 33 52-87 14-46 (71)
67 2ep0_A Zinc finger protein 28 20.1 16 0.00055 22.3 -0.7 36 21-60 11-46 (46)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=98.63 Aligned_cols=93 Identities=25% Similarity=0.540 Sum_probs=77.8
Q ss_pred CccCccCCC---CCceEEecCCccccchhhhHhhhhccccccccccc-cCCCCCCCCCCCCcccCcceEEEccccccccc
Q 023008 2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV-PLSSSSTQMPKCDICQETSGFFFCLQDRALLC 77 (288)
Q Consensus 2 k~~Cd~Ce~---a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~Rv-pL~~a~~~~p~CdiC~s~~A~ffC~~D~a~LC 77 (288)
++.|++|.. .+|+.+|..|.+.||..|...+|..++.+.+|.++ ++.+.......|+.|+..+..+||..|..++|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 468999983 68999999999999999998899988888999987 55433445668999998999999999999999
Q ss_pred ccccc-cccCCCCCCCCCceeeee
Q 023008 78 RKCDV-AIHTANSYVSAHQRFLLT 100 (288)
Q Consensus 78 ~~CDv-~iHsaN~l~s~H~RvpL~ 100 (288)
..|.. ..|. .|.-++|.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99997 5775 57666654
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=96.71 E-value=0.001 Score=49.93 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=46.0
Q ss_pred ccccccccCCCC-CCCCCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCccc
Q 023008 39 ASKHQRVPLSSS-STQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVKV 104 (288)
Q Consensus 39 a~rH~RvpL~~a-~~~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~~ 104 (288)
+.+|+.+..... ......|..|+..+..+||..|...+|..|.. .-|. .|.-++|..+.-
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 467887775431 33456799998889999999999999999998 5674 687777776544
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=96.25 E-value=0.002 Score=44.01 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=35.4
Q ss_pred CCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeeeeCc
Q 023008 55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV 102 (288)
Q Consensus 55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~ 102 (288)
..|..|+.+...+||..|..++|..|....|. .|..++|..+
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea 48 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA 48 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence 45999988899999999999999999987664 7888887654
No 4
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=96.17 E-value=0.0036 Score=43.31 Aligned_cols=43 Identities=26% Similarity=0.531 Sum_probs=36.0
Q ss_pred CCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCcc
Q 023008 54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK 103 (288)
Q Consensus 54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~ 103 (288)
...|..|+ +...+||..|...+|..|.. .-|. .|..+||..+.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~ 51 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPS 51 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHh
Confidence 44699997 78999999999999999997 5674 78888887654
No 5
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.94 E-value=0.0045 Score=42.04 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=34.2
Q ss_pred CCCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeee
Q 023008 53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLT 100 (288)
Q Consensus 53 ~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~ 100 (288)
....|..|+.++..+||..|..++|..|.. ..|. .|.-+||.
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 455699998788999999999999999984 4675 57777764
No 6
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.92 E-value=0.0043 Score=47.63 Aligned_cols=43 Identities=19% Similarity=0.464 Sum_probs=37.7
Q ss_pred CCCCcccC---cceEEEcccccccccccccccccCCCCCCCCCcee
Q 023008 55 PKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 97 (288)
Q Consensus 55 p~CdiC~s---~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~Rv 97 (288)
..|++|.. .++..+|..|...+|..|...+|..+..+.+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 45999984 58899999999999999999999988777888876
No 7
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.91 E-value=0.0031 Score=44.95 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=37.0
Q ss_pred CCCCCcccCcceEEEccccccccccccccc-ccCCCCCCCCCceeeeeCccc
Q 023008 54 MPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVKV 104 (288)
Q Consensus 54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~-iHsaN~l~s~H~RvpL~g~~~ 104 (288)
...|..|+.++..+||..|..++|..|... .|. .|..+||..+.-
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~ 53 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ 53 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence 445999988889999999999999999864 675 688888776543
No 8
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=95.80 E-value=0.0065 Score=45.85 Aligned_cols=44 Identities=25% Similarity=0.577 Sum_probs=36.8
Q ss_pred CccCccCCC---CCceEEecCCccccchhhhHhhhhccccccccccc
Q 023008 2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV 45 (288)
Q Consensus 2 k~~Cd~Ce~---a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~Rv 45 (288)
.+.|++|.. .+|+..|..|.+.||..|-...|...+.+.+|.-+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999974 68999999999999999954469877778888765
No 9
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.61 E-value=0.0058 Score=44.79 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=43.6
Q ss_pred ccccccccCCCCCCCCCCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeeeeCccc
Q 023008 39 ASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKV 104 (288)
Q Consensus 39 a~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~~~ 104 (288)
+.+|+-+.-. .......|..|+ ++..+||..|...+|..|...-|. .|.-++|..+.-
T Consensus 4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~ 61 (72)
T 2csv_A 4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKA 61 (72)
T ss_dssp SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHH
T ss_pred ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHH
Confidence 4677766532 223456799995 889999999999999999886664 788888876543
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.13 E-value=0.012 Score=41.87 Aligned_cols=42 Identities=24% Similarity=0.578 Sum_probs=35.1
Q ss_pred CCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCcc
Q 023008 55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK 103 (288)
Q Consensus 55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~ 103 (288)
..|..|+ ++..+||..|...||..|.. .-|. .|..+||..+.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~ 57 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS 57 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence 4699997 67889999999999999998 4564 78888887654
No 11
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=95.11 E-value=0.0081 Score=39.44 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCCcccCcceEEEcccccccccccccc-cccC
Q 023008 55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHT 86 (288)
Q Consensus 55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHs 86 (288)
..|..|+ +...+||..|...+|..|.. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4599997 77899999999999999998 4564
No 12
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.47 E-value=0.028 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.7
Q ss_pred CCCCCCcccCcceEEEcccccccccccccc-cccC
Q 023008 53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHT 86 (288)
Q Consensus 53 ~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHs 86 (288)
....|..|+ +...+||..|...||..|.. .-|.
T Consensus 17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 345699995 78999999999999999997 4564
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=88.05 E-value=0.2 Score=37.49 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=37.1
Q ss_pred CCCCCCcccC---cceEEEcccccccccccccccccCCCCCCCCCcee
Q 023008 53 QMPKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 97 (288)
Q Consensus 53 ~~p~CdiC~s---~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~Rv 97 (288)
....|++|.. .+|.-.|+.|.+.+|..|....|.......+|+-+
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 3567999975 67899999999999999999889877667777643
No 14
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=82.42 E-value=1.5 Score=32.69 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=39.8
Q ss_pred CCCCCCcccCcceEEEcccc-cccccccccccccCCCCCCCCCceeeeeCc
Q 023008 53 QMPKCDICQETSGFFFCLQD-RALLCRKCDVAIHTANSYVSAHQRFLLTGV 102 (288)
Q Consensus 53 ~~p~CdiC~s~~A~ffC~~D-~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~ 102 (288)
..+-|-||.+. |.+.|..| .-+.|..|-...|. +...+.|+-++....
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 46779999866 99999988 77999999999996 456789999987544
No 15
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=81.15 E-value=1.4 Score=29.88 Aligned_cols=40 Identities=30% Similarity=0.620 Sum_probs=29.7
Q ss_pred cCccCCCCCceEEecCCccccchhhhH-hhhhccccccccccccCCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS 50 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHsANkLa~rH~RvpL~~a 50 (288)
.|..=. ..-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 10 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 10 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred cChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 454444 67889999999999999964 344 46778888654
No 16
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=77.08 E-value=2.6 Score=31.49 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=37.9
Q ss_pred CccCccCCCCCceEEecCC-ccccchhhhHhhhhccccccccccccCCC
Q 023008 2 RIQCNVCEAAEAKVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSS 49 (288)
Q Consensus 2 k~~Cd~Ce~a~A~vyC~AD-~A~LC~~CD~~VHsANkLa~rH~RvpL~~ 49 (288)
.+.|-.|... |++.|..| .-.+|.+|=+..|.. .-.+.|+.+++..
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYHP 54 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCCC
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeeccC
Confidence 3679999865 99999998 567799999999964 4568999999854
No 17
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=76.51 E-value=2.6 Score=28.08 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=29.7
Q ss_pred cCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccCCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSS 50 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL~~a 50 (288)
.|..=....-.+||..|...+|..|-..-| +.|..++|.++
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea 48 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA 48 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence 455554466789999999999999965444 46888887543
No 18
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.82 E-value=3.9 Score=28.62 Aligned_cols=40 Identities=25% Similarity=0.692 Sum_probs=28.9
Q ss_pred cCccCCCCCceEEecCCccccchhhhH-hhhhccccccccccccCCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS 50 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHsANkLa~rH~RvpL~~a 50 (288)
.|..-. .+-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 344443 56789999999999999964 334 45777887654
No 19
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=68.97 E-value=3.8 Score=28.47 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=30.8
Q ss_pred cCccCCCCCceEEecCCccccchhhhH-hhhhccccccccccccCCCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSSS 51 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHsANkLa~rH~RvpL~~a~ 51 (288)
.|..=...+-.+||..|...+|..|-. .-|. .|..++|.++.
T Consensus 10 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~ 52 (64)
T 2d8u_A 10 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF 52 (64)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred cCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHH
Confidence 455544466789999999999999964 3453 58888887643
No 20
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=66.98 E-value=6.3 Score=28.82 Aligned_cols=41 Identities=24% Similarity=0.500 Sum_probs=29.9
Q ss_pred cCccCCCCCceEEecCCccccchhhhH-hhhhccccccccccccCCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS 50 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHsANkLa~rH~RvpL~~a 50 (288)
.|..=...+-.+||..|...+|..|-. .-| +.|..++|.++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 344443456889999999999999965 444 45778888664
No 21
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=66.98 E-value=8.4 Score=29.17 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=31.8
Q ss_pred CCCCCcccCcce---EEEcccccc----cccccccccccCCCCCCCCCceeeee
Q 023008 54 MPKCDICQETSG---FFFCLQDRA----LLCRKCDVAIHTANSYVSAHQRFLLT 100 (288)
Q Consensus 54 ~p~CdiC~s~~A---~ffC~~D~a----~LC~~CDv~iHsaN~l~s~H~RvpL~ 100 (288)
...|+.|+..+. .|.|..|.- -||..|-...+..+..-..|.-.+|.
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 345999997654 499999974 69999987654433333466655554
No 22
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.37 E-value=1.9 Score=44.64 Aligned_cols=81 Identities=26% Similarity=0.501 Sum_probs=51.7
Q ss_pred CccCccCCC--CCceEEecCCccccchhhhHh--hhhcccc-ccccccccCCCCC---CCCCCCCcccCcceEEE----c
Q 023008 2 RIQCNVCEA--AEAKVLCCADEAALCWECDDK--VHAANKL-ASKHQRVPLSSSS---TQMPKCDICQETSGFFF----C 69 (288)
Q Consensus 2 k~~Cd~Ce~--a~A~vyC~AD~A~LC~~CD~~--VHsANkL-a~rH~RvpL~~a~---~~~p~CdiC~s~~A~ff----C 69 (288)
...|.+|+- ..+++.|..|...+|..-... -|--|-| .+||.-|.|.+-+ .....|-.|+..+.+.- .
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 357999983 579999999999999854321 2322333 4688888876532 33556999998876522 2
Q ss_pred ccc--ccccccc-ccc
Q 023008 70 LQD--RALLCRK-CDV 82 (288)
Q Consensus 70 ~~D--~a~LC~~-CDv 82 (288)
..+ -.+||+. |..
T Consensus 91 ~~~~~~~~~cr~~c~~ 106 (802)
T 2xzl_A 91 KSEAVVVLLCRIPCAQ 106 (802)
T ss_dssp -----CEEEETTTTTT
T ss_pred cCCceEEEEeCCcccc
Confidence 223 3477985 844
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=61.70 E-value=4.7 Score=32.49 Aligned_cols=85 Identities=20% Similarity=0.387 Sum_probs=50.3
Q ss_pred CccCccCCCCCceEEecC-Cccccchhhh--HhhhhccccccccccccCCCCCCCCCCCCcccCcceEEEc-cccccccc
Q 023008 2 RIQCNVCEAAEAKVLCCA-DEAALCWECD--DKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFC-LQDRALLC 77 (288)
Q Consensus 2 k~~Cd~Ce~a~A~vyC~A-D~A~LC~~CD--~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC-~~D~a~LC 77 (288)
...|..|+.....++=.. ....||..|. .+.|..|....+-.+... .+......|..|+......|= ..+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~-~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLS-AARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCC-CCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccccccccccccccc-ccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 467999996554444444 3558999998 455665554433322211 122345679999876544443 23446899
Q ss_pred cccccc--ccCC
Q 023008 78 RKCDVA--IHTA 87 (288)
Q Consensus 78 ~~CDv~--iHsa 87 (288)
-.|-+- .|..
T Consensus 84 NaCgl~~~~~~~ 95 (115)
T 4hc9_A 84 NACGLYYKLHNI 95 (115)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHhCC
Confidence 999864 4543
No 24
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.90 E-value=6.2 Score=28.27 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=26.4
Q ss_pred cCccCCCCCceEEecCCccccch-hhhHhhhhc
Q 023008 4 QCNVCEAAEAKVLCCADEAALCW-ECDDKVHAA 35 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~-~CD~~VHsA 35 (288)
+|++|+. ++..-|..|.+..|- .| .+.|..
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C-~k~Hk~ 44 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVC-FRKHKE 44 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHH-HHHHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHH-HHHHHh
Confidence 6999999 999999999999998 89 566754
No 25
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=55.43 E-value=4.4 Score=28.22 Aligned_cols=30 Identities=30% Similarity=0.654 Sum_probs=24.1
Q ss_pred CccCccCCCC-CceEEecCCccc-cchhhhHh
Q 023008 2 RIQCNVCEAA-EAKVLCCADEAA-LCWECDDK 31 (288)
Q Consensus 2 k~~Cd~Ce~a-~A~vyC~AD~A~-LC~~CD~~ 31 (288)
...|+.|... ...+.|..|..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4679999854 367999999877 99999654
No 26
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.21 E-value=9.3 Score=26.46 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=22.8
Q ss_pred cCccCCCCCceEEecCCccccchhhhH-hhhh
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHA 34 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHs 34 (288)
.|..= ...-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H-~e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKH-QEALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTT-CCBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhh-CceeeEEcCCCCcEEecccCCCCCCC
Confidence 35444 367889999999999999975 4554
No 27
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.83 E-value=6.9 Score=31.26 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=6.0
Q ss_pred CCccCccCCC
Q 023008 1 MRIQCNVCEA 10 (288)
Q Consensus 1 Mk~~Cd~Ce~ 10 (288)
|...|-.|..
T Consensus 31 M~~~CP~Cq~ 40 (101)
T 2jne_A 31 MELHCPQCQH 40 (101)
T ss_dssp CCCBCSSSCS
T ss_pred ccccCccCCC
Confidence 5556666664
No 28
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=50.59 E-value=6.4 Score=28.57 Aligned_cols=31 Identities=29% Similarity=0.617 Sum_probs=26.0
Q ss_pred ccCccCCC---CCceEEecCCccccch-hhhHhhhh
Q 023008 3 IQCNVCEA---AEAKVLCCADEAALCW-ECDDKVHA 34 (288)
Q Consensus 3 ~~Cd~Ce~---a~A~vyC~AD~A~LC~-~CD~~VHs 34 (288)
.+|.+|.. .+|..-|..|.+..|- .|- +.|.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~-k~Hk 46 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY-RTHG 46 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHH-HHHC
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHH-HHHh
Confidence 37999985 7899999999999998 995 4664
No 29
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=49.09 E-value=15 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCceEEecCCccccchhhh-HhhhhccccccccccccC
Q 023008 11 AEAKVLCCADEAALCWECD-DKVHAANKLASKHQRVPL 47 (288)
Q Consensus 11 a~A~vyC~AD~A~LC~~CD-~~VHsANkLa~rH~RvpL 47 (288)
.+-.+||..|...+|..|- ..-|. .|..++|
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred ccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4578999999999999995 33454 4666665
No 30
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.90 E-value=4.2 Score=29.40 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=25.1
Q ss_pred CCCcccCcc---eEEEcccccccccccccccccCC
Q 023008 56 KCDICQETS---GFFFCLQDRALLCRKCDVAIHTA 87 (288)
Q Consensus 56 ~CdiC~s~~---A~ffC~~D~a~LC~~CDv~iHsa 87 (288)
.|-.|+..- ..+.|..|+...|.+||+-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 377776532 24779999999999999999964
No 31
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.88 E-value=5.5 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.646 Sum_probs=24.8
Q ss_pred cCccCCCC---CceEEecCCccccchhhhHhhhhc
Q 023008 4 QCNVCEAA---EAKVLCCADEAALCWECDDKVHAA 35 (288)
Q Consensus 4 ~Cd~Ce~a---~A~vyC~AD~A~LC~~CD~~VHsA 35 (288)
.|-.|... ..++-|..|...+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 47777742 224569999999999999999963
No 32
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.41 E-value=5.7 Score=41.17 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=51.4
Q ss_pred CccCccCCC--CCceEEecCCccccchhhhHh--hhhccc-cccccccccCCCCC---CCCCCCCcccCcceE----EEc
Q 023008 2 RIQCNVCEA--AEAKVLCCADEAALCWECDDK--VHAANK-LASKHQRVPLSSSS---TQMPKCDICQETSGF----FFC 69 (288)
Q Consensus 2 k~~Cd~Ce~--a~A~vyC~AD~A~LC~~CD~~--VHsANk-La~rH~RvpL~~a~---~~~p~CdiC~s~~A~----ffC 69 (288)
...|.+|+- ...++.|..|...+|..-... -|=-|- +.+||.-|.|.+-+ -....|-.|+..+.+ +-.
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 357999984 468999999999999854422 222232 34688888875532 245569999988665 223
Q ss_pred ccccc--cccc-cccc
Q 023008 70 LQDRA--LLCR-KCDV 82 (288)
Q Consensus 70 ~~D~a--~LC~-~CDv 82 (288)
..+.. +||+ -|..
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (800)
T 2wjy_A 86 KADSVVVLLCRQPCAS 101 (800)
T ss_dssp ----CCEECCTTTTSS
T ss_pred ccCceEEEEecCcccc
Confidence 33444 7898 4744
No 33
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=48.24 E-value=12 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=24.0
Q ss_pred CccCccCCCCC---ceEEecCCcc----ccchhhhHhh
Q 023008 2 RIQCNVCEAAE---AKVLCCADEA----ALCWECDDKV 32 (288)
Q Consensus 2 k~~Cd~Ce~a~---A~vyC~AD~A----~LC~~CD~~V 32 (288)
.+.||.|+..+ -.+.|..|.. -||..|-..-
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g 58 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 58 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCc
Confidence 46899999754 5689999975 5999996543
No 34
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=45.07 E-value=5.3 Score=25.55 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=20.3
Q ss_pred cCccCCCCCceEEecCCccccchhhhH
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDD 30 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~ 30 (288)
.|..=+ ..-.+||..|...+|..|..
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~ 30 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRD 30 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSS
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCC
Confidence 344443 56789999999999999964
No 35
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.60 E-value=22 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=23.4
Q ss_pred ccCccCCCCC---ceEEecCCccc-cchhhhHhh
Q 023008 3 IQCNVCEAAE---AKVLCCADEAA-LCWECDDKV 32 (288)
Q Consensus 3 ~~Cd~Ce~a~---A~vyC~AD~A~-LC~~CD~~V 32 (288)
+.||.|+..+ -.+-|..|..+ ||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999654 67899998655 999997543
No 36
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.30 E-value=8.6 Score=30.28 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=25.0
Q ss_pred CCCCCCcccCc-------ceEEEccccccccccccccc
Q 023008 53 QMPKCDICQET-------SGFFFCLQDRALLCRKCDVA 83 (288)
Q Consensus 53 ~~p~CdiC~s~-------~A~ffC~~D~a~LC~~CDv~ 83 (288)
..+.|.+|++. ..++-|.+|..+||+.|-.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY 52 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY 52 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH
Confidence 45679999865 46677999999999999863
No 37
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=41.45 E-value=17 Score=25.82 Aligned_cols=39 Identities=23% Similarity=0.629 Sum_probs=27.7
Q ss_pred cCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccCCC
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSS 49 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL~~ 49 (288)
.|..= ..+-.+||..|...+|..|-..-| +.|..++|.+
T Consensus 20 ~C~~H-~e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 20 KCPVH-GKTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp BCTTT-CCBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred cCccc-CCceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 34444 367889999999999999965444 3566666644
No 38
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=40.15 E-value=19 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=27.5
Q ss_pred ccCccCCCCCceEEecCCccccchhhhHhhhhc
Q 023008 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAA 35 (288)
Q Consensus 3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsA 35 (288)
..|--|+.....+-+.+=..++|..| ..||+.
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~C-sgiHR~ 57 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSC-SGSLRG 57 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHH-HHHHTT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhc-cchhcc
Confidence 36888998888888888899999999 799985
No 39
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.92 E-value=24 Score=23.26 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=24.4
Q ss_pred CccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 20 DEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 20 D~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
...+-|..|+...-.. ..+.+|.|+-..+. .-.|++|
T Consensus 37 ~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~---~~~C~~C 73 (73)
T 2ctu_A 37 RKTPMCEKCRKDSCQE-AALNKDEGNESGKK---TSGPSSG 73 (73)
T ss_dssp SSSCCCHHHHHTCSCC-CSSCCCSSCCCCCC---CSSCCCC
T ss_pred CCCCCCCCCChhhcCH-HHHHHHHHhhcCCC---CCCCCCC
Confidence 5678899999877664 34688988754222 2346665
No 40
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.58 E-value=12 Score=28.64 Aligned_cols=25 Identities=36% Similarity=0.773 Sum_probs=14.2
Q ss_pred CCccCccCCCCCceEEecCCccccchhhh
Q 023008 1 MRIQCNVCEAAEAKVLCCADEAALCWECD 29 (288)
Q Consensus 1 Mk~~Cd~Ce~a~A~vyC~AD~A~LC~~CD 29 (288)
|...|-.|...-.. ....+.|..|+
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~ 25 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCA 25 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTC
T ss_pred CCCCCCCCCCcccc----CCCceECcccc
Confidence 77778888754332 22344466664
No 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=35.32 E-value=9.5 Score=23.89 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=22.7
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCccc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQ 61 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~ 61 (288)
..+.|..|+...-.. ..+.+|+|+-..+. .-.|++|.
T Consensus 11 k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDV-YHLNRHKLSHSGEK---PYSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSH-HHHHHHGGGSCSCC---CCCSCCCC
T ss_pred cCeeCCCCCcccCCH-HHHHHHHHhcCCCC---CccCCCCC
Confidence 456788887665543 34578888765332 34588775
No 42
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=35.15 E-value=25 Score=27.45 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=22.4
Q ss_pred ccCccCCCCC---ceEEecCCcc-ccchhhhHh
Q 023008 3 IQCNVCEAAE---AKVLCCADEA-ALCWECDDK 31 (288)
Q Consensus 3 ~~Cd~Ce~a~---A~vyC~AD~A-~LC~~CD~~ 31 (288)
+.||.|...+ ..+-|..|.. -||..|-..
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 6899999643 6689999855 499999543
No 43
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.05 E-value=36 Score=24.29 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=26.9
Q ss_pred CCCCcccCcc---eEEEcccccc-cccccccccccCCCCCCCCCc
Q 023008 55 PKCDICQETS---GFFFCLQDRA-LLCRKCDVAIHTANSYVSAHQ 95 (288)
Q Consensus 55 p~CdiC~s~~---A~ffC~~D~a-~LC~~CDv~iHsaN~l~s~H~ 95 (288)
..|+.|...+ ..+.|..|.- -||..|-......+..-..|.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~ 56 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQ 56 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCC
Confidence 3499998764 4588998854 699999876433332223453
No 44
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.64 E-value=28 Score=33.54 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=47.4
Q ss_pred CCccCccCCCCCceEEecCC-ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcccCcceEEEcc--ccccccc
Q 023008 1 MRIQCNVCEAAEAKVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCL--QDRALLC 77 (288)
Q Consensus 1 Mk~~Cd~Ce~a~A~vyC~AD-~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC~--~D~a~LC 77 (288)
|+..|-.|++. .+++.+-= ...||..|-...+..+... ...-.-..|..|.+....+-|. .|....|
T Consensus 49 ~e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~~~f~~---------D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC 118 (386)
T 2pv0_B 49 IEDICICCGSL-QVHTQHPLFEGGICAPCKDKFLDALFLY---------DDDGYQSYCSICCSGETLLICGNPDCTRCYC 118 (386)
T ss_dssp GGGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHTTTTCB---------CSSSSBCSCTTTCCCSSCEECCSTTCCCEEC
T ss_pred ccceeCCCCCc-CccccCCCcCcchhhHHHHHHhccCccc---------CCCCCcccceEcCCCCeEEEeCCCCCCcchH
Confidence 34578888864 22333222 5678999976666543211 1112234699999888888898 8999999
Q ss_pred cccccc
Q 023008 78 RKCDVA 83 (288)
Q Consensus 78 ~~CDv~ 83 (288)
..|...
T Consensus 119 ~~Ci~~ 124 (386)
T 2pv0_B 119 FECVDS 124 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999754
No 45
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.03 E-value=51 Score=25.29 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=13.2
Q ss_pred ccccccccccccccCC
Q 023008 72 DRALLCRKCDVAIHTA 87 (288)
Q Consensus 72 D~a~LC~~CDv~iHsa 87 (288)
..+++|..|+..-|..
T Consensus 67 ~~ll~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 67 SKMLVCDTCDKGYHTF 82 (111)
T ss_dssp TTEEECSSSCCEEEGG
T ss_pred CCeeECCCCCcHHhHH
Confidence 4589999999998864
No 46
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=32.83 E-value=14 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.592 Sum_probs=19.8
Q ss_pred CCccCccCCCCCceEEecCCccccchhhh
Q 023008 1 MRIQCNVCEAAEAKVLCCADEAALCWECD 29 (288)
Q Consensus 1 Mk~~Cd~Ce~a~A~vyC~AD~A~LC~~CD 29 (288)
|++.|..|.+ .-+||=.+-...+|..|.
T Consensus 6 m~VKCp~C~n-iq~VFShA~tvV~C~~Cg 33 (66)
T 1qxf_A 6 VKVKCPDCEH-EQVIFDHPSTIVKCIICG 33 (66)
T ss_dssp EEEECTTTCC-EEEEESSCSSCEECSSSC
T ss_pred EEEECCCCCC-ceEEEecCceEEEcccCC
Confidence 7889999984 556666666666666664
No 47
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.36 E-value=16 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=19.4
Q ss_pred CCccCccCCCCCceEEecCCccccchhhh
Q 023008 1 MRIQCNVCEAAEAKVLCCADEAALCWECD 29 (288)
Q Consensus 1 Mk~~Cd~Ce~a~A~vyC~AD~A~LC~~CD 29 (288)
|++.|..|.+ .-+||=++-...+|..|.
T Consensus 14 m~VkCp~C~~-~q~VFSha~t~V~C~~Cg 41 (63)
T 3j20_W 14 LRVKCIDCGN-EQIVFSHPATKVRCLICG 41 (63)
T ss_dssp EEEECSSSCC-EEEEESSCSSCEECSSSC
T ss_pred EEEECCCCCC-eeEEEecCCeEEEccCcC
Confidence 7889999984 555566666666666664
No 48
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.00 E-value=72 Score=22.86 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=24.3
Q ss_pred ccCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcccC
Q 023008 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQE 62 (288)
Q Consensus 3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~s 62 (288)
..|.+|+...- ..+|+.|++..|..= .+.+|...+.....|..|..
T Consensus 13 ~~C~vC~~~~~--------ll~Cd~C~~~~H~~C------l~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDGTD--------VLRCTHCAAAFHWRC------HFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCCTT--------CEECSSSCCEECHHH------HCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCCCe--------EEECCCCCCceeccc------CCCccCcCCCCCEECccccC
Confidence 46889986443 455556665555421 12334333334455777753
No 49
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.75 E-value=19 Score=27.65 Aligned_cols=28 Identities=21% Similarity=0.676 Sum_probs=19.9
Q ss_pred CCccCccCCCCCceEEecCCccccchhhh
Q 023008 1 MRIQCNVCEAAEAKVLCCADEAALCWECD 29 (288)
Q Consensus 1 Mk~~Cd~Ce~a~A~vyC~AD~A~LC~~CD 29 (288)
|++.|..|.. .-+||=.+-...+|..|.
T Consensus 31 m~VkCp~C~n-~q~VFShA~t~V~C~~Cg 58 (81)
T 2xzm_6 31 MDVKCAQCQN-IQMIFSNAQSTIICEKCS 58 (81)
T ss_dssp EEEECSSSCC-EEEEETTCSSCEECSSSC
T ss_pred EEeECCCCCC-eeEEEecCccEEEccCCC
Confidence 7889999984 566666666666666664
No 50
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=27.72 E-value=36 Score=28.16 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=29.7
Q ss_pred ccCccCCCCCceEEecCCccccchhhhHhhhhcccccccc
Q 023008 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKH 42 (288)
Q Consensus 3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH 42 (288)
..|--|+.....+-..+=..++|..| ..+|+. ++.|
T Consensus 37 ~~CaDCga~~P~WaS~n~GvfiC~~C-sgiHR~---LG~h 72 (138)
T 2owa_A 37 RTCFDCESRNPTWLSLSFAVFICLNC-SSDHRK---MGVH 72 (138)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHH-HHHHHT---TCTT
T ss_pred CcCCCCcCCCCCeEEecCCEEEhHhh-hHHHhC---CCCC
Confidence 36888998788888888899999999 799985 4666
No 51
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=26.83 E-value=36 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=29.4
Q ss_pred cCccCCCCCceEEecCCccccchhhhHhhhhccccccccc
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQ 43 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~ 43 (288)
.|--|+.....+-+.+=..++|..| ..+|+. ++.|.
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~C-sgiHR~---lG~hi 64 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRC-AGIHRN---LGVHI 64 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHH-HHHHHH---HCTTT
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhh-hHHHhc---CCCCC
Confidence 6888998778888888899999999 799985 45553
No 52
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.11 E-value=33 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCCCcccCcceEEEcccccccccc
Q 023008 55 PKCDICQETSGFFFCLQDRALLCR 78 (288)
Q Consensus 55 p~CdiC~s~~A~ffC~~D~a~LC~ 78 (288)
..|.+|+. .+.+.|..|.+..|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 46999999 999999999999886
No 53
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=25.11 E-value=38 Score=33.76 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCCCCcccCcc-----eEEEccccccccccccccc
Q 023008 53 QMPKCDICQETS-----GFFFCLQDRALLCRKCDVA 83 (288)
Q Consensus 53 ~~p~CdiC~s~~-----A~ffC~~D~a~LC~~CDv~ 83 (288)
....|+.|+... -.+.|..|...+-.+|...
T Consensus 112 ~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp SCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSS
T ss_pred CCCCCCccccccchhhcCccccccCCcchhhhhhhc
Confidence 355799997652 2456666666665555543
No 54
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=34 Score=28.31 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=29.2
Q ss_pred cCccCCCCCceEEecCCccccchhhhHhhhhccccccccc
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQ 43 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~ 43 (288)
.|--|+.....+-..+=..++|..| ..||+. ++.|.
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~C-sgiHR~---LG~hi 66 (141)
T 2crr_A 31 YCADCEAKGPRWASWNIGVFICIRC-AGIHRN---LGVHI 66 (141)
T ss_dssp SCSSSCCSSCCSEETTTTEECCHHH-HHHHHH---HCTTT
T ss_pred cCCCCCCCCCCeEEeccCeEEhhhh-hHhHhc---CCCCC
Confidence 6888998777777888899999999 799985 45553
No 55
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.47 E-value=45 Score=28.55 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=29.7
Q ss_pred cCccCCCCCceEEecCCccccchhhhHhhhhccccccccc
Q 023008 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQ 43 (288)
Q Consensus 4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~ 43 (288)
.|--|+.....+-+..=..+||..| ..+|+. ++.|.
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~C-SGiHR~---LG~hI 59 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINC-SGVHRS---LGVHI 59 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHH-HHHHHH---TCTTT
T ss_pred ccccCCCCCCCeEEecCCeeEHHhh-hHHhcC---CCCCC
Confidence 6888998878888888899999999 799984 56663
No 56
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.13 E-value=1.1e+02 Score=26.10 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=45.8
Q ss_pred CccCccCCCCCceEEecCC-ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcccCcceEEEcc--cccccccc
Q 023008 2 RIQCNVCEAAEAKVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCL--QDRALLCR 78 (288)
Q Consensus 2 k~~Cd~Ce~a~A~vyC~AD-~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC~--~D~a~LC~ 78 (288)
+..|-.|++. .+++..-= ...||..|-...+..... + ...-.-..|.+|.+....+-|. .|....|.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~--~-------DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQ--Y-------DDDGYQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTC--B-------CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccc--c-------CCCCCcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 4567777753 33333332 566788886555543211 0 1122244699999888888888 79999999
Q ss_pred ccccc
Q 023008 79 KCDVA 83 (288)
Q Consensus 79 ~CDv~ 83 (288)
.|...
T Consensus 106 ~CI~~ 110 (159)
T 3a1b_A 106 ECVDL 110 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
No 57
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.96 E-value=12 Score=22.85 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=22.2
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCccc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQ 61 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~ 61 (288)
..+-|..|++..-... .+.+|+|+-..+. ...|++|+
T Consensus 9 k~~~C~~C~k~f~~~~-~l~~H~~~H~~~~---~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKD-RMSYHVRSHDGSV---GKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHH-HHHHHHHHHSCCC---CCCCCCCC
T ss_pred CCCcCCCCCcccCCHH-HHHHHHHHccCCC---CCCCcCCC
Confidence 4567888887665533 3577887755332 33477663
No 58
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.83 E-value=1.1e+02 Score=25.26 Aligned_cols=72 Identities=17% Similarity=0.411 Sum_probs=42.5
Q ss_pred CccCccCCCCCc-----eEEecCC-ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcccCcceEEEccccccc
Q 023008 2 RIQCNVCEAAEA-----KVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRAL 75 (288)
Q Consensus 2 k~~Cd~Ce~a~A-----~vyC~AD-~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC~~D~a~ 75 (288)
++.|-.|+.... .++..-= ...+|..|-...+.-+.. .. .....-.|.+|.+--..+-|..|...
T Consensus 14 ~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~--------~d-~Dg~~d~C~vC~~GG~LlcCD~Cpr~ 84 (142)
T 2lbm_A 14 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS--------RD-SDGMDEQCRWCAEGGNLICCDFCHNA 84 (142)
T ss_dssp CCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCC--------BC-TTSCBCSCSSSCCCSSEEECSSSCCE
T ss_pred CCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCce--------ec-CCCCCCeecccCCCCcEEeCCCCCCe
Confidence 355666664331 2333322 345677775545543211 11 12234569999988778888899999
Q ss_pred ccccccc
Q 023008 76 LCRKCDV 82 (288)
Q Consensus 76 LC~~CDv 82 (288)
.|..|..
T Consensus 85 Fh~~Cl~ 91 (142)
T 2lbm_A 85 FCKKCIL 91 (142)
T ss_dssp EEHHHHH
T ss_pred eeHhhcC
Confidence 9999865
No 59
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.28 E-value=30 Score=21.00 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=21.2
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
..+-|..|++..-.. ..+.+|+|+-..+. .-.|++|
T Consensus 11 ~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C 46 (46)
T 2ytg_A 11 KPFKCGECGKSYNQR-VHLTQHQRVHTGEK---PSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSS-HHHHTTGGGGSSCC---SSCSCCC
T ss_pred CCeECCCCCcccCCH-HHHHHHHHHcCCCC---CCCCCCC
Confidence 456788887665553 34578887654322 2346655
No 60
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.00 E-value=41 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=29.9
Q ss_pred ccCccCCCCCceEEecCCccccchhhhHhhhhccccccccc
Q 023008 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQ 43 (288)
Q Consensus 3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~ 43 (288)
..|--|+.....+-+.+=..++|..| ..||+. ++.|.
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~C-sgiHR~---LG~hi 66 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFLCIDC-SGSHRS---LGVHL 66 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEECCHHH-HHHHHH---HCTTT
T ss_pred CcCCCCcCCCCCcEEeccCEEEchhc-chhhcc---CCCCC
Confidence 46888998777777888899999999 799985 46664
No 61
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.47 E-value=17 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=20.1
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
..+-|..|++..-.. ..+.+|+|+-..+. .-.|++|
T Consensus 11 k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C 46 (46)
T 2em7_A 11 KPYKCEECGKGFICR-RDLYTHHMVHTGEK---PSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCH-HHHHHHGGGGTTCC---CSSTTCC
T ss_pred cCccCCCccchhCCH-HHHHHHHHHhCCCC---CCCCCCC
Confidence 346677777655543 33577777654322 2346665
No 62
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=19 Score=21.92 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=21.0
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
.-+-|..|++..-... .+.+|+|+-..+. .-.|++|
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~~~k---~~~C~~C 46 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHI-GLNQHRRIHTGEK---PSGPSSG 46 (46)
T ss_dssp CSBCCTTTCCCBSSHH-HHHHHHTTTTTCC---CCSSCCC
T ss_pred CCeECCCCCceeCCHH-HHHHHHHHhCCCC---CCCCCCC
Confidence 4567888877665543 4577877654222 2346655
No 63
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.17 E-value=18 Score=22.17 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=20.0
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
..+.|..|++..-.. ..+.+|+|+-..+. .-.|++|
T Consensus 11 k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k---~~~C~~c 46 (46)
T 2emf_A 11 KHFECTECGKAFTRK-STLSMHQKIHTGEK---PSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESCH-HHHHHHGGGTSCSS---CSCCCCC
T ss_pred CCeECCCCCchhCCH-HHHHHHHHHhCCCC---CCCCCCC
Confidence 346677777655543 33577777654322 2346665
No 64
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=20.82 E-value=2.1e+02 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=19.9
Q ss_pred CCcccCcceEEEccccccccccccccc
Q 023008 57 CDICQETSGFFFCLQDRALLCRKCDVA 83 (288)
Q Consensus 57 CdiC~s~~A~ffC~~D~a~LC~~CDv~ 83 (288)
|.+|+. .+.|.|..|...+|.+|...
T Consensus 61 C~~C~k-~~~~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 61 CDECSS-AAVSFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp CTTTCS-BCCEECSSSSCEECTTTCTT
T ss_pred CCcCCC-CCCcCcCCCCcchhhhccCC
Confidence 556664 45589999999999998754
No 65
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.61 E-value=17 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=20.3
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
..+.|..|++..-... .+.+|+|+-..+. .-.|++|
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~~~k---~~~C~~C 46 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKS-YLIIHMRTHSGEK---PSGPSSG 46 (46)
T ss_dssp CSCBCSSSCCBCSCHH-HHHHHHTTTCCSC---SSCCCCC
T ss_pred CCcCCCccChhhCChH-HHHHHHHHhCCCC---CCCCCCC
Confidence 4567777876655533 3577777654322 2346655
No 66
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.44 E-value=58 Score=23.70 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=21.2
Q ss_pred CCCCCCCcccCcceEEEcccccccccccccccccCC
Q 023008 52 TQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTA 87 (288)
Q Consensus 52 ~~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsa 87 (288)
.....|.+|...... .....++|..|+...|..
T Consensus 14 ~~~~~C~vC~~~~s~---~~~~ll~CD~C~~~~H~~ 46 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ---NSNVILFCDMCNLAVHQE 46 (71)
T ss_dssp CSSCSCSSSCCCCCC---SSSCEEECSSSCCEEEHH
T ss_pred CCCCCCCCCCCCCCC---CCCCEEECCCCCCccccc
Confidence 445569999754210 235677888888877753
No 67
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=16 Score=22.32 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=20.1
Q ss_pred ccccchhhhHhhhhccccccccccccCCCCCCCCCCCCcc
Q 023008 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (288)
Q Consensus 21 ~A~LC~~CD~~VHsANkLa~rH~RvpL~~a~~~~p~CdiC 60 (288)
..+-|..|++..-.. ..+.+|+|+-..+. .-.|++|
T Consensus 11 ~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C 46 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYG-SSLTVHQRIHTGEK---PSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSH-HHHHHHHTTTSSSC---CCSCCCC
T ss_pred CCeeCcccCcccCCh-HHHHHHHHHhCCCC---CCCCCCC
Confidence 446677777655543 33577777654222 2346665
Done!