BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023010
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 82/105 (78%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ SR EIE SPSR+DGID +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRF++
Sbjct: 37 YFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYL 96
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
R+SHA +DR IAT +FLA K EETPRPL DV+ S E+ HK++
Sbjct: 97 RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKD 141
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 80/107 (74%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ R EIE SPSR D ID +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF+
Sbjct: 34 YFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFI 93
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256
R+SHA +DR IAT +FLA K EETPRPL DV+ S E+ HK++ T
Sbjct: 94 RQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPT 140
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ SR EIE S SR+DGID +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRFF+
Sbjct: 38 YFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFL 97
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
R+SHA +DR IAT +FLA K EETPRPL DV+ S E+ HK++
Sbjct: 98 RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKD 142
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 79/105 (75%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ R EIE SPSR DGID +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF
Sbjct: 34 YFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFF 93
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
R+SHA +DR IAT +FLA K EETPRPL DV+ S E+ +K++
Sbjct: 94 RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKD 138
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2
Length = 460
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 141 SKLEDDE--PVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIG 198
S L DDE P F SR+EIER SPSR+DGID ET LR SYC F++ LG RL++PQ TI
Sbjct: 21 SNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIA 80
Query: 199 TAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNI 255
TA+ CHRFF+R+SHA +DR IAT + LA K EETP L DV+ AS E HK+++
Sbjct: 81 TAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDL 137
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2
Length = 317
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 81/105 (77%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ SR+EIERFSPSRKDGID ++E+ LR SYC F+Q LG++L + Q TI AMV+CHRF++
Sbjct: 35 YFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYM 94
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
R+SHA +D IAT++LFLA K+E+ P L+ V+ AS E+ ++ +
Sbjct: 95 RQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYEIIYEWD 139
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2
Length = 446
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 81/105 (77%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+++RDE+ER SPSR+DG+ A +E LR +YC+FI+++GLRL+LPQ TI TA +LCHRF++
Sbjct: 10 YVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYL 69
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
R+SHA ++ +AT +FLA+K E+TP PL V+ + E ++++
Sbjct: 70 RQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKD 114
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2
Length = 630
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 74/97 (76%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+E+E+FSPSRKDGI + E+ +R YC+FI+++G+RL+LPQ TI TA++ CHRF++
Sbjct: 19 YFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYL 78
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246
+S A + IAT +FLA+K E+TP PL+ V+R +
Sbjct: 79 YQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVA 115
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%)
Query: 152 SRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR 211
+R+ IE+ SPSR DGI+ ET R+SY +F+Q LG RL PQ TI TA+VLC RFF R+
Sbjct: 10 TREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQ 69
Query: 212 SHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246
S +D +A +F+A K E +PRP DV+ S
Sbjct: 70 SLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVS 104
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3
Length = 724
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D+ +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGVDSDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQN 254
+S R+ +A AALFLAAK EE P+ L V++ + H Q
Sbjct: 72 IQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQE 116
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1
Length = 427
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 52/89 (58%)
Query: 149 VFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFF 208
F DE R SPSRKDGID ET LR C IQ G+ L+LPQ + TA VL HRF+
Sbjct: 8 TFYLTDEQLRDSPSRKDGIDEATETALRVYGCDLIQESGILLKLPQAVMATAQVLFHRFY 67
Query: 209 VRRSHACHDRFIIATAALFLAAKSEETPR 237
++S +A + ++LA K EE+PR
Sbjct: 68 CKKSFVRFSVKRVAASCVWLAGKLEESPR 96
>sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2
Length = 416
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 54/94 (57%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
F DE + SPSRKDGID E LR C IQ G+ L+LPQ + T VL RF+
Sbjct: 9 FYLSDEQLKASPSRKDGIDETTEISLRIYGCDLIQEGGILLKLPQAVMATGQVLFQRFYC 68
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVL 243
++S A D I+A + ++LA+K EE P+ V+
Sbjct: 69 KKSLAKFDVKIVAASCVWLASKLEENPKKARQVI 102
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQ 253
+S R +A AALFLAAK EE P+ L V++ + H Q
Sbjct: 72 IQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQ 115
>sp|Q6T8E9|CCNT1_BOVIN Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGLDPDKELSNRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQ 253
+S R +A AALFLAAK EE P+ L V++ + H Q
Sbjct: 72 IQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQ 115
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2
Length = 496
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 157 ERFSP--SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 214
ER SP S DG+D ET LR C IQ+ G+ L LPQ + T VL HRFF +S
Sbjct: 42 ERLSPTPSMSDGLDLNTETDLRILGCELIQSAGILLRLPQVAMATGQVLFHRFFYSKSFV 101
Query: 215 CHDRFIIATAALFLAAKSEETPRPLNDVLRASSEL 249
H IIA A + LA+K EE PR + DV+ L
Sbjct: 102 KHSFEIIAMACINLASKIEEAPRRIRDVINVCHHL 136
>sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1
Length = 532
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 157 ERFSP--SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 214
ER SP S +DG+D ET LR C IQ G+ L LPQ + T VL HRFF +S
Sbjct: 68 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 127
Query: 215 CHDRFIIATAALFLAAKSEETPRPLNDVL 243
H I+A A + LA+K EE PR + DV+
Sbjct: 128 KHSFEIVAMACINLASKIEEAPRRIRDVI 156
>sp|O60583|CCNT2_HUMAN Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2
Length = 730
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
F +R+++E +PSR+ G++A +E R IQ +G RL + Q TI TA+V HRF++
Sbjct: 12 FFTREQLEN-TPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 70
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251
S ++ II++ ALFLAAK EE R L V++ + H
Sbjct: 71 HHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH 112
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1
Length = 527
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 157 ERFSP--SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 214
ER SP S +DG+D ET LR C IQ G+ L LPQ + T VL HRFF +S
Sbjct: 63 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 122
Query: 215 CHDRFIIATAALFLAAKSEETPRPLNDVL 243
H I+A A + LA+K EE PR + DV+
Sbjct: 123 KHSFEIVAMACINLASKIEEAPRRIRDVI 151
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1
Length = 526
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 157 ERFSP--SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 214
ER SP S +DG+D ET LR C IQ G+ L LPQ + T VL HRFF +S
Sbjct: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
Query: 215 CHDRFIIATAALFLAAKSEETPRPLNDVL 243
H I+A A + LA+K EE PR + DV+
Sbjct: 122 KHSFEIVAMACINLASKIEEAPRRIRDVI 150
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1
Length = 726
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 13 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 71
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQ 253
+S +A AALFLAAK EE P+ L V++ + H Q
Sbjct: 72 IQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQ 115
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+S+D++ F+PS DGI +E R C FI N+GLRL+LPQT + TA + HRF++
Sbjct: 19 IISKDQL-VFTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFYL 77
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLL 258
R S + + +A +FLA K E++ R L D++ +++ K + L+
Sbjct: 78 RFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLV 126
>sp|Q5RD50|CCNL1_PONAB Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1
Length = 172
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 157 ERFSP--SRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 214
ER SP S +DG+D ET LR C IQ G+ L LPQ + T VL HRFF +S
Sbjct: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
Query: 215 CHDRFIIATAALFLAAKSEETPRPLNDVL 243
H I+A A + LA+K EE PR + DV+
Sbjct: 122 KHSFEIVAMACINLASKIEEAPRRIRDVI 150
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1
Length = 725
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ +R+++E SPSR+ G+D +E R +Q++G RL + Q TI TA+V HRF++
Sbjct: 12 YFTREQLEN-SPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM 70
Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQ 253
+S +A AALFLAAK EE P+ L V++ + H Q
Sbjct: 71 IQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQ 114
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1
Length = 534
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%)
Query: 158 RFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHD 217
RF+PS G+D ET LR + C IQ G+ L LPQ + T VL RFF +S H
Sbjct: 71 RFTPSMSSGLDPDTETELRVTGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHS 130
Query: 218 RFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251
++ A + LA+K EE PR + DV+ L H
Sbjct: 131 MEHVSMACVHLASKIEEAPRRIRDVINVFHRLRH 164
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1
Length = 518
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%)
Query: 154 DEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSH 213
D+ RF+PS G+D ET LR C IQ G+ L LPQ + T VL RFF +S
Sbjct: 54 DDKLRFTPSMSSGLDVDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSF 113
Query: 214 ACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251
H ++ A + LA+K EE PR + DV+ L H
Sbjct: 114 VKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRH 151
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2
Length = 520
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%)
Query: 154 DEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSH 213
D+ RF+PS G+D ET LR C IQ G+ L LPQ + T VL RFF +S
Sbjct: 54 DDKLRFTPSMSSGLDIDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSF 113
Query: 214 ACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251
H ++ A + LA+K EE PR + DV+ L H
Sbjct: 114 VKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRH 151
>sp|O96433|CCNT_DROME Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2
Length = 1097
Score = 71.6 bits (174), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 143 LEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMV 202
E D+ + S D++ SPSR+ GI E R IQ +G RL++ Q I TA+V
Sbjct: 39 FEKDKIWYFSNDQLAN-SPSRRCGIKGDDELQYRQMTAYLIQEMGQRLQVSQLCINTAIV 97
Query: 203 LCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSE 248
HRF+ S R +A+A+LFLAAK EE PR L V+RA+++
Sbjct: 98 YMHRFYAFHSFTHFHRNSMASASLFLAAKVEEQPRKLEHVIRAANK 143
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1
Length = 520
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 49/90 (54%)
Query: 154 DEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSH 213
D+ RF+PS G+D ET LR C IQ G+ L LPQ + T VL RFF +S
Sbjct: 56 DDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSF 115
Query: 214 ACHDRFIIATAALFLAAKSEETPRPLNDVL 243
H ++ A + LA+K EE PR + DV+
Sbjct: 116 VKHSMEHVSMACVHLASKIEEAPRRIRDVI 145
>sp|Q7ZVX0|CCNL1_DANRE Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1
Length = 498
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 160 SPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRF 219
+PS DG+D ET LR C IQ+ G+ L LPQ + T V+ RFF +S H+
Sbjct: 47 TPSMLDGLDHETETDLRILGCERIQSAGILLRLPQVAMATGQVIFQRFFFSKSFVKHNFE 106
Query: 220 IIATAALFLAAKSEETPRPLNDVL 243
I+A A + LA+K EE+PR + DV+
Sbjct: 107 IVAMACVNLASKIEESPRRVRDVI 130
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1
Length = 497
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 159 FSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDR 218
+PS DGID E LR C +Q G+ L LPQ + T VL RFF +S H
Sbjct: 39 LTPSVVDGIDVNTEIDLRCVGCELVQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 98
Query: 219 FIIATAALFLAAKSEETPRPLNDVL 243
+A A + LA+K EE PR + DV+
Sbjct: 99 EHVAMACVHLASKIEEAPRRIRDVI 123
>sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2
Length = 580
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 160 SPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRF 219
+PS+ +G+D E R FI ++G RL L T+ T ++ HRF++ S R+
Sbjct: 34 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 93
Query: 220 IIATAALFLAAKSEETPRPLNDVLRASSEL 249
+ LFLA K EETP+ D+++ + L
Sbjct: 94 VTGACCLFLAGKVEETPKKCKDIIKTARSL 123
>sp|O88874|CCNK_MOUSE Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3
Length = 554
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 160 SPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRF 219
+PS+ +G+D E R FI ++G RL L T+ T ++ HRF++ S R+
Sbjct: 34 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 93
Query: 220 IIATAALFLAAKSEETPRPLNDVLRASSEL 249
+ LFLA K EETP+ D+++ + L
Sbjct: 94 VTGACCLFLAGKVEETPKKCKDIIKTARSL 123
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
+ R++IE +P K + + LR YC IQNLG L+L Q I TA+V RF++
Sbjct: 15 LLDRNKIEESNPKDKQYLTPIELKKLRTHYCFVIQNLGNALKLRQRAISTAIVYFKRFYL 74
Query: 210 RRSHA-CHDRFIIATAALFLAAKSEET 235
+ S C R ++A L+L++K EE
Sbjct: 75 KNSFVDCEPR-LVAVTCLYLSSKVEEC 100
>sp|Q503D6|FA58A_DANRE Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1
Length = 247
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231
+TH R C FI G++L + + TA VL HRFF S ++ +++A +A+ LA K
Sbjct: 27 KTHFRV--CRFITETGVKLGMRSVPMATACVLYHRFFQSASLQIYEPYLVAMSAIHLAGK 84
Query: 232 SEETPRPLNDVLRASSELYH 251
EE D++ +H
Sbjct: 85 VEEQHLRTRDIINVCHRYFH 104
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
IQ LG +L+L Q I TA V RF+ R S C D ++A + LA+K EE
Sbjct: 48 IQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLASKVEE 99
>sp|P34425|CCNT1_CAEEL Cyclin-T1.1 OS=Caenorhabditis elegans GN=cit-1.1 PE=3 SV=1
Length = 468
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNL--GL------RLELPQTTIGTAM 201
+++E+++ + S ++G+ E R AFIQ + GL ++++ T + A
Sbjct: 21 LFTKEEMKK-TASIQEGMSREEELASRQMAAAFIQEMIDGLNNVKDPKMKIGHTGLCVAH 79
Query: 202 VLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256
HRF+ S +D + A +FLA KS+E PR L+ V+ E ++ +T
Sbjct: 80 THMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRERKDRKQLT 134
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
IQ LG +L+L Q I TA V RF+ R S C D ++A + L++K EE
Sbjct: 47 IIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLSSKVEE 99
>sp|Q6CP20|SSN8_KLULA RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SSN8 PE=3 SV=1
Length = 304
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 179 YCAF-IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPR 237
YC F I LG RL + Q + TA V RF +R S + +++ T ++LA K EE P+
Sbjct: 75 YCYFLIMKLGRRLNIRQCALVTAHVYLSRFLLRASVREVNLYLLITTCIYLACKVEECPQ 134
Query: 238 PLNDVLRASSELY 250
+ ++ + L+
Sbjct: 135 HIRTLVNEARSLW 147
>sp|Q8N1B3|FA58A_HUMAN Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2
Length = 248
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231
E + + FI G++L + I TA + H+FF + +D ++IA ++++LA K
Sbjct: 23 EARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGK 82
Query: 232 SEETPRPLNDVLRAS 246
EE D++ S
Sbjct: 83 VEEQHLRTRDIINVS 97
>sp|Q4QQW5|FA58A_RAT Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2
SV=1
Length = 250
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLND 241
FI G++L + I TA + H+FF + +D +++A ++L+LA K EE D
Sbjct: 35 FIMEAGVKLGMQSIPIATACTIYHKFFCEINLDAYDLYLVAMSSLYLAGKVEEQHLRTRD 94
Query: 242 VLRAS 246
++ S
Sbjct: 95 IINVS 99
>sp|Q8QZR8|FA58B_MOUSE Cyclin-related protein FAM58B OS=Mus musculus GN=Fam58b PE=2 SV=2
Length = 250
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231
E + + FI G++L + I TA + H+FF + +D +++A ++++LA K
Sbjct: 25 EARVHFRVTRFIMEAGVKLGMQSIPIATACTIYHKFFCEINLDAYDLYLVAMSSIYLAGK 84
Query: 232 SEETPRPLNDVLRAS 246
EE D++ S
Sbjct: 85 VEEQHLRTRDIINVS 99
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 179 YCAF-IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPR 237
YC F I LG RL + Q + TA + RF ++ S + +++ T ++LA K EE P+
Sbjct: 77 YCYFLIMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVEECPQ 136
Query: 238 PLNDVLRASSELY 250
+ ++ + L+
Sbjct: 137 YIRTLVSEARTLW 149
>sp|Q6CAC7|SSN8_YARLI RNA polymerase II holoenzyme cyclin-like subunit OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SSN8 PE=3 SV=1
Length = 280
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 159 FSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDR 218
F P + I AL H+R I LG L + Q + TA V RF + +
Sbjct: 32 FDPGKLQTIKALNPWHVRVYLHTLIHLLGQNLSIRQRILATAEVYLTRFHTKVPFGEINP 91
Query: 219 FIIATAALFLAAKSEETPRPLNDVLRASSELY 250
+++ A+++A K EE P+ + + + L+
Sbjct: 92 YLVVATAVYVACKVEEHPQHIRTITSEARSLW 123
>sp|P0C7Q3|FA58B_HUMAN Putative cyclin-related protein FAM58B OS=Homo sapiens GN=FAM58BP
PE=5 SV=1
Length = 252
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLND 241
FI G++L + I TA + +FF D ++IA ++++LA K EE P +D
Sbjct: 37 FIMEAGVKLGMQSIPIATACTIYPKFFCETILDAFDPYLIAMSSIYLAGKVEEQPLWAHD 96
Query: 242 VLRAS 246
++ S
Sbjct: 97 IISVS 101
>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SSN8 PE=3 SV=1
Length = 339
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 179 YCAF-IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPR 237
YC F I LG RL + Q + TA + RF ++ S + +++ T ++LA K EE P+
Sbjct: 95 YCYFLIMKLGRRLNIRQYALATAHIYLSRFLLKASVREVNLYLLVTTCVYLACKVEECPQ 154
Query: 238 PLNDVLRASSELY 250
+ ++ + L+
Sbjct: 155 YIRTLVSEARSLW 167
>sp|Q6NRK9|FA58A_XENLA Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2
Length = 244
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAA 230
++ + + FI G++L + I TA + H+F+ S +D ++A +A++LA
Sbjct: 18 KDVKIHFKVARFIMEAGVKLGMHSVPIATACTIYHKFYKETSLENYDPHLVAMSAIYLAG 77
Query: 231 KSEETPRPLNDVL 243
K EE D++
Sbjct: 78 KVEEQHLRTRDII 90
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 171 RETHLRYSYCAF-IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLA 229
R+ +LR YC F I LG RL + Q + TA V RF ++ S + +++ T ++LA
Sbjct: 69 RDYNLRI-YCYFLIMKLGRRLNVRQYALATAHVYLARFCLKASIREVNLYLLVTTCIYLA 127
Query: 230 AKSEETPRPLNDVLRASSELY 250
K EE P+ + ++ + L+
Sbjct: 128 CKVEECPQHIRTLVNEARSLW 148
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
IQ LG L+L Q I TA V RF+ R S D ++A +FLA+K EE
Sbjct: 43 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 94
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
IQ LG L+L Q I TA V RF+ R S D ++A +FLA+K EE
Sbjct: 48 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
IQ LG L+L Q I TA V RF+ R S D ++A +FLA+K EE
Sbjct: 48 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,559,421
Number of Sequences: 539616
Number of extensions: 4149095
Number of successful extensions: 23175
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 15394
Number of HSP's gapped (non-prelim): 5526
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)