Query 023010
Match_columns 288
No_of_seqs 158 out of 716
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 99.9 1.9E-26 6.5E-31 206.0 13.7 109 146-255 2-110 (257)
2 2i53_A Cyclin K; cell cycle, t 99.9 7.5E-25 2.6E-29 195.1 11.9 107 145-252 11-117 (258)
3 2pk2_A Cyclin-T1, protein TAT; 99.9 3.4E-25 1.2E-29 209.9 9.2 112 143-255 6-117 (358)
4 3rgf_B Cyclin-C; protein kinas 99.9 3.4E-25 1.2E-29 202.7 8.4 107 145-251 12-119 (285)
5 1jkw_A Cyclin H; cell cycle, c 99.9 1.6E-22 5.5E-27 188.6 15.5 130 144-274 6-174 (323)
6 1zp2_A RNA polymerase II holoe 99.9 8.4E-22 2.9E-26 174.4 9.5 97 145-250 6-103 (235)
7 1c9b_A General transcription f 99.7 1.2E-16 4E-21 138.5 9.9 70 177-246 6-75 (207)
8 1ais_B TFB TFIIB, protein (tra 99.5 6.2E-14 2.1E-18 120.5 8.3 76 170-246 4-79 (200)
9 3g33_B CCND3 protein; Ser/Thr 99.4 5.3E-13 1.8E-17 123.6 8.2 111 161-272 56-180 (306)
10 2w96_A G1/S-specific cyclin-D1 99.4 3.5E-13 1.2E-17 121.6 6.3 98 172-270 53-164 (271)
11 2cch_B Cyclin A2, cyclin-A; co 99.4 7.8E-13 2.7E-17 118.7 8.5 75 172-246 35-110 (260)
12 2b9r_A Human cyclin B1; cell c 99.4 1E-12 3.5E-17 118.8 8.5 75 172-246 34-109 (269)
13 1g3n_C V-cyclin; cyclin-depend 99.4 4.1E-12 1.4E-16 113.8 11.5 103 171-274 46-162 (257)
14 2f2c_A Cyclin homolog, V-cycli 99.3 7.2E-12 2.4E-16 112.1 9.6 104 169-273 45-162 (254)
15 1w98_B Cyclin E, G1/S-specific 99.2 5.5E-11 1.9E-15 108.5 11.9 102 172-274 46-162 (283)
16 3k7a_M Transcription initiatio 99.2 3.7E-12 1.3E-16 119.7 3.0 73 172-245 123-195 (345)
17 1f5q_B Gamma herpesvirus cycli 99.1 5.3E-10 1.8E-14 101.2 10.4 103 169-272 42-158 (252)
18 4bbr_M Transcription initiatio 99.0 1.6E-09 5.5E-14 102.4 9.4 74 172-246 123-196 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 7.7E-06 2.6E-10 70.0 7.9 69 179-247 108-176 (200)
20 1c9b_A General transcription f 97.9 4.9E-05 1.7E-09 65.4 9.3 68 179-246 102-169 (207)
21 4bbr_M Transcription initiatio 96.9 0.00016 5.3E-09 68.3 0.0 93 178-270 234-332 (345)
22 3k7a_M Transcription initiatio 96.6 0.00034 1.2E-08 65.5 0.0 68 179-246 235-302 (345)
23 1zp2_A RNA polymerase II holoe 95.8 0.02 6.9E-07 50.1 7.1 56 180-235 135-190 (235)
24 3rgf_B Cyclin-C; protein kinas 95.8 0.019 6.6E-07 52.1 7.1 55 181-235 159-213 (285)
25 2i53_A Cyclin K; cell cycle, t 95.6 0.047 1.6E-06 48.0 8.9 55 180-234 152-210 (258)
26 2ivx_A Cyclin-T2; transcriptio 94.0 0.13 4.4E-06 45.3 7.3 55 180-234 147-202 (257)
27 2b9r_A Human cyclin B1; cell c 93.7 0.1 3.6E-06 46.7 6.2 57 179-235 138-194 (269)
28 2pmi_B PHO85 cyclin PHO80, ami 92.4 0.67 2.3E-05 43.4 9.8 79 180-258 78-171 (293)
29 2pk2_A Cyclin-T1, protein TAT; 92.3 0.19 6.4E-06 47.4 6.0 54 181-234 155-209 (358)
30 2cch_B Cyclin A2, cyclin-A; co 92.1 0.2 6.7E-06 44.5 5.6 58 179-236 139-198 (260)
31 2f2c_A Cyclin homolog, V-cycli 91.0 0.57 1.9E-05 41.3 7.4 53 181-233 154-210 (254)
32 3m03_A ORC6, origin recognitio 89.6 0.73 2.5E-05 36.6 6.1 61 183-244 6-71 (95)
33 1jkw_A Cyclin H; cell cycle, c 89.6 0.49 1.7E-05 43.7 5.9 54 181-234 169-225 (323)
34 1g3n_C V-cyclin; cyclin-depend 88.8 0.55 1.9E-05 41.5 5.5 56 179-234 151-210 (257)
35 2w96_A G1/S-specific cyclin-D1 87.6 0.77 2.6E-05 40.8 5.7 54 179-232 157-214 (271)
36 3g33_B CCND3 protein; Ser/Thr 85.8 1.1 3.8E-05 41.0 5.8 54 181-234 173-230 (306)
37 4ell_A Retinoblastoma-associat 83.1 5.6 0.00019 38.7 9.6 73 178-251 281-357 (411)
38 2qdj_A Retinoblastoma-associat 83.1 3.6 0.00012 38.4 8.0 64 183-246 6-73 (304)
39 3h4c_A Transcription factor TF 81.9 5.9 0.0002 36.0 8.6 65 180-244 16-83 (260)
40 2r7g_A PP110, retinoblastoma-a 79.6 8.1 0.00028 36.7 9.2 73 178-251 217-293 (347)
41 4elj_A Retinoblastoma-associat 71.7 16 0.00056 37.5 9.6 74 178-252 526-603 (656)
42 1w98_B Cyclin E, G1/S-specific 67.4 9.4 0.00032 34.2 6.1 52 180-231 152-214 (283)
43 4elj_A Retinoblastoma-associat 59.3 22 0.00074 36.7 7.6 63 183-246 8-75 (656)
44 1f5q_B Gamma herpesvirus cycli 50.3 62 0.0021 28.6 8.3 52 179-230 149-204 (252)
45 1wi3_A DNA-binding protein SAT 37.2 82 0.0028 23.7 5.8 28 182-212 37-66 (71)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.94 E-value=1.9e-26 Score=205.99 Aligned_cols=109 Identities=37% Similarity=0.576 Sum_probs=104.4
Q ss_pred CCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHH
Q 023010 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA 225 (288)
Q Consensus 146 ~~~WlFT~eELe~~tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaAC 225 (288)
.++||||++||+ .+||+.+||++++|..+|..++++|+++|..|+||+.|++||++||||||+++++.+++++.|++||
T Consensus 2 ~~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 468999999996 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCChHHHHHHHHhhhhccCc
Q 023010 226 LFLAAKSEETPRPLNDVLRASSELYHKQNI 255 (288)
Q Consensus 226 LFLAcKvEEtprkLRDII~va~~Il~k~~~ 255 (288)
||||||+||.|++++||+.+++.++++..+
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~ 110 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEP 110 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSC
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998887654
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.92 E-value=7.5e-25 Score=195.10 Aligned_cols=107 Identities=28% Similarity=0.537 Sum_probs=101.0
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHH
Q 023010 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (288)
Q Consensus 145 ~~~~WlFT~eELe~~tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaA 224 (288)
+..+|+||++||+ .+||+.+|+++++|..+|..++++|+++|..|+||+.|++||++||||||.++++.+++++.|++|
T Consensus 11 ~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~a 89 (258)
T 2i53_A 11 TKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGAC 89 (258)
T ss_dssp CSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred hccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHH
Confidence 4678999999996 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHhhhhc
Q 023010 225 ALFLAAKSEETPRPLNDVLRASSELYHK 252 (288)
Q Consensus 225 CLFLAcKvEEtprkLRDII~va~~Il~k 252 (288)
|||||||+||.+++++||+.++..++..
T Consensus 90 cL~lA~K~eE~~~~l~d~~~~~~~~~~~ 117 (258)
T 2i53_A 90 CLFLAGKVEETPKKCKDIIKTARSLLND 117 (258)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHSCH
T ss_pred HHHHHHccccccccHHHHHHHHHHHhch
Confidence 9999999999999999999887765543
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.91 E-value=3.4e-25 Score=209.87 Aligned_cols=112 Identities=36% Similarity=0.560 Sum_probs=104.4
Q ss_pred CCCCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHH
Q 023010 143 LEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIA 222 (288)
Q Consensus 143 ~~~~~~WlFT~eELe~~tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VA 222 (288)
..+..+||||++||+ .+||+.+||++++|..+|..+++||+++|..|+||+.|++||++||||||+++++.++++++|+
T Consensus 6 ~~~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva 84 (358)
T 2pk2_A 6 KNNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVA 84 (358)
T ss_dssp --CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHH
T ss_pred CCCCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHH
Confidence 345678999999996 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHhhhhccCc
Q 023010 223 TAALFLAAKSEETPRPLNDVLRASSELYHKQNI 255 (288)
Q Consensus 223 aACLFLAcKvEEtprkLRDII~va~~Il~k~~~ 255 (288)
+||||||||+||.+++++||+.+++.++++..+
T Consensus 85 ~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~ 117 (358)
T 2pk2_A 85 PAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES 117 (358)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSC
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhccccc
Confidence 999999999999999999999998887776543
No 4
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.4e-25 Score=202.71 Aligned_cols=107 Identities=23% Similarity=0.291 Sum_probs=99.1
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHH
Q 023010 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (288)
Q Consensus 145 ~~~~WlFT~eELe~~tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaA 224 (288)
+.++|+||++||+...+...+|+++++|+.+|..++++|+++|..|+||+.|++||++||||||+++++.++++++|++|
T Consensus 12 ~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~a 91 (285)
T 3rgf_B 12 HYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPT 91 (285)
T ss_dssp HHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred ccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHH
Confidence 45789999999987656689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCC-ChHHHHHHHHhhhh
Q 023010 225 ALFLAAKSEETPR-PLNDVLRASSELYH 251 (288)
Q Consensus 225 CLFLAcKvEEtpr-kLRDII~va~~Il~ 251 (288)
|||||||+||.++ .++||+.++..++.
T Consensus 92 cLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 92 CVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 9999999999998 58899988876543
No 5
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.89 E-value=1.6e-22 Score=188.61 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=103.4
Q ss_pred CCCCCccccH-HHHHHh------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHH
Q 023010 144 EDDEPVFMSR-DEIERF------------------SPSRKDGIDALRETHLRYSYCAFIQNLGLRLE--LPQTTIGTAMV 202 (288)
Q Consensus 144 ~~~~~WlFT~-eELe~~------------------tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~--LPq~tiATAiV 202 (288)
.|.+.|+||+ +||++. .++..+||++++|+.+|..+|.+|+++|..|+ ||+.|++||++
T Consensus 6 tq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~ 85 (323)
T 1jkw_A 6 SQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACM 85 (323)
T ss_dssp -----CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4678999995 777532 36789999999999999999999999999999 99999999999
Q ss_pred HHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHH------------------HHhhhhccCcceeccccch
Q 023010 203 LCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRA------------------SSELYHKQNITLLSYLLPI 264 (288)
Q Consensus 203 yfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~v------------------a~~Il~k~~~~l~~y~~p~ 264 (288)
||||||++++++++++++|++||||||||+||.+++++||+.+ ...|++..+|.+.+. -|.
T Consensus 86 ~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~-~P~ 164 (323)
T 1jkw_A 86 YFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVH-NPY 164 (323)
T ss_dssp HHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC-CSH
T ss_pred HHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcC-ChH
Confidence 9999999999999999999999999999999999998887643 334445556655433 455
Q ss_pred hHHHHHHHHH
Q 023010 265 VRVSTTISVL 274 (288)
Q Consensus 265 e~~~~~~~vl 274 (288)
.++..+...+
T Consensus 165 ~~L~~~l~~l 174 (323)
T 1jkw_A 165 RPFEGFLIDL 174 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554333
No 6
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.85 E-value=8.4e-22 Score=174.43 Aligned_cols=97 Identities=22% Similarity=0.398 Sum_probs=88.1
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCc-ccHHHHHH
Q 023010 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHAC-HDRFIIAT 223 (288)
Q Consensus 145 ~~~~WlFT~eELe~~tPS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~-~d~~~VAa 223 (288)
+.++|+||++||+ .+|+..++ | |..++++|+++|..|+||+.|++||++||+|||+++++.+ ++++.|++
T Consensus 6 ~~~~w~ft~~~l~-~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ 76 (235)
T 1zp2_A 6 QLTQLFLSTDLES-LEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVA 76 (235)
T ss_dssp GGTGGGSCSSCTT-SSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHH
T ss_pred CCCCCccCHHHHH-HCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 4688999999997 46665542 2 8999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHhhh
Q 023010 224 AALFLAAKSEETPRPLNDVLRASSELY 250 (288)
Q Consensus 224 ACLFLAcKvEEtprkLRDII~va~~Il 250 (288)
||||||||+||.|++++||+.++..++
T Consensus 77 acL~lA~K~Ee~~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 77 TCIYLSCKVEECPVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHhccccCcccHHHHHHHHHHHc
Confidence 999999999999999999999876554
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.68 E-value=1.2e-16 Score=138.50 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 177 ~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
.+++++|+++|..|+||+.|++||++||||||..+++.+++++.|++||||||||.||.|++++||+.++
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~ 75 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVS 75 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999987653
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.48 E-value=6.2e-14 Score=120.51 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 170 eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
..|+.++ .++.+|+++|..|+||+.++.||+.||+||+..+.+.+.++..||+||||+|||.|+.|+.++||+.++
T Consensus 4 ~~er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~ 79 (200)
T 1ais_B 4 AAERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA 79 (200)
T ss_dssp ----CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred hHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3466665 999999999999999999999999999999999999999999999999999999999999999988764
No 9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.39 E-value=5.3e-13 Score=123.59 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=88.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCCh
Q 023010 161 PSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPL 239 (288)
Q Consensus 161 PS~~dGL~~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkL 239 (288)
|+-.+++..+.+...|...+.||.++|..++|++.|+.+|+.||+||+.++++...+.+.|++||||||||.||. +.++
T Consensus 56 ~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~ 135 (306)
T 3g33_B 56 ASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 (306)
T ss_dssp SCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCT
T ss_pred cHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 334456666666788999999999999999999999999999999999999999999999999999999999886 4455
Q ss_pred HH-------------HHHHHHhhhhccCcceeccccchhHHHHHHH
Q 023010 240 ND-------------VLRASSELYHKQNITLLSYLLPIVRVSTTIS 272 (288)
Q Consensus 240 RD-------------II~va~~Il~k~~~~l~~y~~p~e~~~~~~~ 272 (288)
++ |+.....|++..++.+-.. -|.+++.++..
T Consensus 136 ~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~-tp~~fl~~~l~ 180 (306)
T 3g33_B 136 EKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAV-IAHDFLAFILH 180 (306)
T ss_dssp THHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCC-CGGGGHHHHHH
T ss_pred HHHHHHhccCccHHHHHHHHHHHHHHcCCccCCC-CHHHHHHHHHH
Confidence 44 5566667777777766532 45555555433
No 10
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.38 E-value=3.5e-13 Score=121.62 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHHHHHH-----
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRA----- 245 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRDII~v----- 245 (288)
....|...++||.+++..++|++.|+++|+.|++||+.+.++.+.+.+.|++||||||||.||. |.++++++.+
T Consensus 53 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~ 132 (271)
T 2w96_A 53 LPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSI 132 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCC
Confidence 3467899999999999999999999999999999999999999999999999999999999998 8888776554
Q ss_pred --------HHhhhhccCcceeccccchhHHHHH
Q 023010 246 --------SSELYHKQNITLLSYLLPIVRVSTT 270 (288)
Q Consensus 246 --------a~~Il~k~~~~l~~y~~p~e~~~~~ 270 (288)
...|++..++.+-+. -|.+++.++
T Consensus 133 ~~~eI~~mE~~IL~~L~~~l~~~-tp~~fl~~~ 164 (271)
T 2w96_A 133 RPEELLQMELLLVNKLKWNLAAM-TPHDFIEHF 164 (271)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCC-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCccCCC-CHHHHHHHH
Confidence 445555666655422 455555544
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.38 E-value=7.8e-13 Score=118.69 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHHHHHHH
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRAS 246 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRDII~va 246 (288)
....|...++||.++|..++|++.|+.+|+.|++||+.++++.+.+.+.|++||||||||.||. +.+++|++.++
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~ 110 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT 110 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999 88888877654
No 12
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.37 E-value=1e-12 Score=118.85 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHHHHHHH
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRAS 246 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRDII~va 246 (288)
....|...++||.+++..++|++.|+.+|+.|++||+..+++.+.+.+.|++||||||||.||. +.+++|++.++
T Consensus 34 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~ 109 (269)
T 2b9r_A 34 TGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVT 109 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHh
Confidence 4467889999999999999999999999999999999999999999999999999999999998 77787776653
No 13
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.35 E-value=4.1e-12 Score=113.85 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHHHHH-----
Q 023010 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLR----- 244 (288)
Q Consensus 171 eE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRDII~----- 244 (288)
.....|...++||.+++..++|++.|+.+|+.|++||+..+++.+.+.+.|++||||||||.||. |.+++|++.
T Consensus 46 i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~ 125 (257)
T 1g3n_C 46 LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADS 125 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCC
Confidence 34567999999999999999999999999999999999999999999999999999999999997 777776654
Q ss_pred --------HHHhhhhccCcceeccccchhHHHHHHHHH
Q 023010 245 --------ASSELYHKQNITLLSYLLPIVRVSTTISVL 274 (288)
Q Consensus 245 --------va~~Il~k~~~~l~~y~~p~e~~~~~~~vl 274 (288)
....|++..++.+-.. -|.+++.++...+
T Consensus 126 ~~~~~i~~mE~~iL~~L~~~l~~~-tp~~fl~~~~~~~ 162 (257)
T 1g3n_C 126 FSRQELIDQEKELLEKLAWRTEAV-LATDVTSFLLLKL 162 (257)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCCC-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcCCCC-CHHHHHHHHHHHc
Confidence 4555666666665432 4566666655444
No 14
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.29 E-value=7.2e-12 Score=112.07 Aligned_cols=104 Identities=10% Similarity=0.145 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHH------
Q 023010 169 ALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLND------ 241 (288)
Q Consensus 169 ~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRD------ 241 (288)
.+.....|...++||.+++..++|++.|+.+|+.|++||+.++++.+.+.+.|++||||||||.||. |.+++|
T Consensus 45 ~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 124 (254)
T 2f2c_A 45 TEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC 124 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC
Confidence 3445568999999999999999999999999999999999999999999999999999999999995 666654
Q ss_pred -------HHHHHHhhhhccCcceeccccchhHHHHHHHH
Q 023010 242 -------VLRASSELYHKQNITLLSYLLPIVRVSTTISV 273 (288)
Q Consensus 242 -------II~va~~Il~k~~~~l~~y~~p~e~~~~~~~v 273 (288)
|+.....|++..++.+-.. -|.+++.++...
T Consensus 125 ~~~~~~~i~~mE~~IL~~L~~~l~~~-tp~~fl~~~~~~ 162 (254)
T 2f2c_A 125 DCFTNLELINQEKDILEALKWDTEAV-LATDFLIPLCNA 162 (254)
T ss_dssp --CCHHHHHHHHHHHHHHTTTCCCCC-CGGGSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCCCC-CHHHHHHHHHHH
Confidence 5566677777777766422 455666555433
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.23 E-value=5.5e-11 Score=108.53 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc-cCcCcccHHHHHHHHHHHhhhcCCC-CCChHHHH------
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR-RSHACHDRFIIATAALFLAAKSEET-PRPLNDVL------ 243 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr-~S~~~~d~~~VAaACLFLAcKvEEt-prkLRDII------ 243 (288)
....|...++||.+++..++|++.|+.+|+.|++||+.. +++.+.+.+.|++||||||||.||. +.+++|++
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~ 125 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGA 125 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCC
Confidence 335788999999999999999999999999999999998 6899999999999999999999998 66666654
Q ss_pred -------HHHHhhhhccCcceeccccchhHHHHHHHHH
Q 023010 244 -------RASSELYHKQNITLLSYLLPIVRVSTTISVL 274 (288)
Q Consensus 244 -------~va~~Il~k~~~~l~~y~~p~e~~~~~~~vl 274 (288)
.....|+...++.+-+ .-|.+++.++...+
T Consensus 126 ~~~~ei~~mE~~IL~~L~~~l~~-~tp~~fL~~f~~~~ 162 (283)
T 1w98_B 126 CSGDEILTMELMIMKALKWRLSP-LTIVSWLNVYMQVA 162 (283)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCC-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCcCCC-CCHHHHHHHHHHHh
Confidence 4556667777776543 24667777665554
No 16
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.20 E-value=3.7e-12 Score=119.68 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHH
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRA 245 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~v 245 (288)
|+.|. .++.+|+++|..|+||+.++.||+.||+||+..+.+.+.+...|++||||+|||.|+.|+.++||+.+
T Consensus 123 er~l~-~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~ 195 (345)
T 3k7a_M 123 DNEVQ-AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSL 195 (345)
T ss_dssp CTTHH-HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 44443 89999999999999999999999999999999999999999999999999999999999999997765
No 17
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.07 E-value=5.3e-10 Score=101.24 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC-CCChHH------
Q 023010 169 ALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLND------ 241 (288)
Q Consensus 169 ~eeE~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt-prkLRD------ 241 (288)
.+.....|...+.||.+++..++|.+.|+.+|+.|+.||+.++++...+.++|++||||||+|.||. |.++++
T Consensus 42 ~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~ 121 (252)
T 1f5q_B 42 QHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG 121 (252)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC
Confidence 4445578999999999999999999999999999999999999999999999999999999999997 555544
Q ss_pred -------HHHHHHhhhhccCcceeccccchhHHHHHHH
Q 023010 242 -------VLRASSELYHKQNITLLSYLLPIVRVSTTIS 272 (288)
Q Consensus 242 -------II~va~~Il~k~~~~l~~y~~p~e~~~~~~~ 272 (288)
|+.....|++..++.+-.. -|.+++.++..
T Consensus 122 ~~yt~~~i~~mE~~IL~~L~w~l~~p-Tp~~FL~~~l~ 158 (252)
T 1f5q_B 122 GATTADKLLTLEVKSLDTLSWVADRC-LSTDLICYILH 158 (252)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCCCCC-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCC-CHHHHHHHHHH
Confidence 5666777777777765532 45666555433
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.96 E-value=1.6e-09 Score=102.36 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 172 E~~LR~~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
|+.| ..+...|.++|..|+||+.++.+|+.+|++++..+.+.+.....|++||||+|||.|+.|+.++||..++
T Consensus 123 er~L-~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~ 196 (345)
T 4bbr_M 123 DNEV-QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196 (345)
T ss_dssp SSST-THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHh
Confidence 3334 4888899999999999999999999999999999999999999999999999999999999999988754
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.09 E-value=7.7e-06 Score=69.95 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHHH
Q 023010 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va~ 247 (288)
-..||.+++..|+|+..+..+|..++.+.....-+.++.|..||+||||+||+..+.++.+++|..++.
T Consensus 108 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~ 176 (200)
T 1ais_B 108 PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVAR 176 (200)
T ss_dssp GGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC
Confidence 458899999999999999999999999999888788999999999999999999999999999988754
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.89 E-value=4.9e-05 Score=65.40 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
...+|.+.+..|+++..+..+|..++..-....-+.++.|..||+|||||||+..+.++..++|..++
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 35889999999999999999999999998887777899999999999999999999999988886654
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.88 E-value=0.00016 Score=68.28 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhhhhc-----
Q 023010 178 SYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHK----- 252 (288)
Q Consensus 178 ~~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va~~Il~k----- 252 (288)
....||.++|..|+|+..+.-+|.-++++.-...-..+..|.-||+|||||||...+..+..++|..++.-.-..
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ry 313 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 455789999999999999999999999988776556788899999999999999988888888777654322111
Q ss_pred -cCcceeccccchhHHHHH
Q 023010 253 -QNITLLSYLLPIVRVSTT 270 (288)
Q Consensus 253 -~~~~l~~y~~p~e~~~~~ 270 (288)
.=......++|.+|++..
T Consensus 314 kel~~~~~~l~~~~~~~~~ 332 (345)
T 4bbr_M 314 KILYEHRDKLVDPQLIANG 332 (345)
T ss_dssp -------------------
T ss_pred HHHHHHHHhhcCHHHhhcc
Confidence 111112444577777643
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.00034 Score=65.54 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
-..||.+.|..|+|+..+.-+|.-++.+.....-+..+.|..||+|||||||++.+..+..++|..++
T Consensus 235 p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 35788999999999999999999999988776667789999999999999999987777777765554
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.79 E-value=0.02 Score=50.08 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC
Q 023010 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt 235 (288)
..||...+..++++..+..+|..++..-+...-+..|.|..||+||||||++..+.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 36888888899999999999999999988888889999999999999999997543
No 24
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.76 E-value=0.019 Score=52.06 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC
Q 023010 181 AFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (288)
Q Consensus 181 ~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt 235 (288)
.||...+..|+++..+...|..|+..-+...-+..|.|..||+||||||++....
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 6888888899999999999999999888777788999999999999999997654
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.63 E-value=0.047 Score=48.01 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCh----HHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 180 CAFIQNLGLRLELPQ----TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq----~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
..||.+.+..|+++. .+...|..++..-+....+..|.|..||+||||||++.-+
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~ 210 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCK 210 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhC
Confidence 478889999999886 5778888888888888788999999999999999999754
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.96 E-value=0.13 Score=45.29 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhc-ccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq~tiATAiVyfHRFYl-r~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
..||..++..|+++..+..+|..++..-.. ..-+..|.|..||+||||||++.-+
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~ 202 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 202 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhC
Confidence 468888889999999888888877766553 3446889999999999999999744
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=93.70 E-value=0.1 Score=46.66 Aligned_cols=57 Identities=18% Similarity=0.020 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCC
Q 023010 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEt 235 (288)
...||...+..++++..+...|..++..-.....+..+.|..||+||||||++.-+.
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~ 194 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN 194 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC
Confidence 347888899999999988888888888877777889999999999999999987543
No 28
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=92.40 E-value=0.67 Score=43.35 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhccc---CcCcccHHHHHHHHHHHhhhc-CCCC-----------CChHHHHH
Q 023010 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKS-EETP-----------RPLNDVLR 244 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~---S~~~~d~~~VAaACLFLAcKv-EEtp-----------rkLRDII~ 244 (288)
.+||.++...-+++..++-.|++|+.|+..+. .+.....+-+.++||.||+|. ++.. +.+++|-.
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~ 157 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNI 157 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHH
Confidence 46888888999999999999999999998753 235667889999999999996 4442 46788888
Q ss_pred HHHhhhhccCccee
Q 023010 245 ASSELYHKQNITLL 258 (288)
Q Consensus 245 va~~Il~k~~~~l~ 258 (288)
.....+...++.|.
T Consensus 158 LE~eFL~lLdf~L~ 171 (293)
T 2pmi_B 158 LENDFLKRVNYRII 171 (293)
T ss_dssp HHHHHHHTTTTCCS
T ss_pred HHHHHHHHcCCcee
Confidence 88888888888665
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.30 E-value=0.19 Score=47.38 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhc-ccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 181 AFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 181 ~fIq~~G~~L~LPq~tiATAiVyfHRFYl-r~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
.||..+...|+++..+..+|..|+..-++ ..-+..|.|..||+||||||++.-+
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSN 209 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhC
Confidence 67788888899998888888888777654 3336889999999999999999754
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=92.10 E-value=0.2 Score=44.45 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHhhcccC-cCcccHHHHHHHHHHHhhhcCCCC
Q 023010 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVRRS-HACHDRFIIATAALFLAAKSEETP 236 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq-~tiATAiVyfHRFYlr~S-~~~~d~~~VAaACLFLAcKvEEtp 236 (288)
...||...+..|+++. .+...|..++..-.+... +..+.|..||+||||+|++.-+.+
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~ 198 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQ 198 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 3578999999999886 666666666665444455 788999999999999999865433
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=91.04 E-value=0.57 Score=41.32 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCChHHH----HHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcC
Q 023010 181 AFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (288)
Q Consensus 181 ~fIq~~G~~L~LPq~ti----ATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvE 233 (288)
.||......++++..+. ..|..++..-.....+..|.|..||+|||+||.+..
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 67788888888887542 345555555555566789999999999999999985
No 32
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=89.59 E-value=0.73 Score=36.60 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhccc-----CcCcccHHHHHHHHHHHhhhcCCCCCChHHHHH
Q 023010 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRR-----SHACHDRFIIATAALFLAAKSEETPRPLNDVLR 244 (288)
Q Consensus 183 Iq~~G~~L~LPq~tiATAiVyfHRFYlr~-----S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~ 244 (288)
|.++|..|++++ ++-.|.-++.+|=..- .-.+++.-..++||+|+|||.---.+.-..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 678999999998 6677778999985321 234777788899999999998776665444544
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=89.59 E-value=0.49 Score=43.72 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHHHh---cCCChHHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 181 AFIQNLGLR---LELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 181 ~fIq~~G~~---L~LPq~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
.|+.++... ++.+..+...|..|+..-++..-+..|.|..||+||||||++..+
T Consensus 169 ~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~ 225 (323)
T 1jkw_A 169 GFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAG 225 (323)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcC
Confidence 344444433 345556677788888877777667889999999999999998643
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=88.80 E-value=0.55 Score=41.47 Aligned_cols=56 Identities=16% Similarity=0.007 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCChHH----HHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~t----iATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
...||......++++..+ ...|..++..-.....+..|.|..||+|||+||.+.-+
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhC
Confidence 446788888888887654 33455566555556667899999999999999998765
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=87.62 E-value=0.77 Score=40.85 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCChHHH----HHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhc
Q 023010 179 YCAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKS 232 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~ti----ATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKv 232 (288)
...||..+...|+++..+. ..|..|+..-.....+..|.|..||+||||||++.
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~ 214 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQG 214 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Confidence 4578888999999987653 23444544333344467899999999999999875
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=85.82 E-value=1.1 Score=41.03 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCChH----HHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCC
Q 023010 181 AFIQNLGLRLELPQT----TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (288)
Q Consensus 181 ~fIq~~G~~L~LPq~----tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEE 234 (288)
.||..+...|+++.. +...|..|+.--.....+..|.|..||+|||+||.+.-+
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 578888888887754 334555566655566678899999999999999999654
No 37
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=83.08 E-value=5.6 Score=38.74 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCh----HHHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhhhh
Q 023010 178 SYCAFIQNLGLRLELPQ----TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251 (288)
Q Consensus 178 ~~~~fIq~~G~~L~LPq----~tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va~~Il~ 251 (288)
.+..-|+++|.+|++++ .-|+|+.-+.=.- ...=|.+-+.-.+.+.|||.-||+.....+.+||+......-+
T Consensus 281 LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~-~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~qPq 357 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQN-EYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPH 357 (411)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH-CGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-hhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcC
Confidence 56677999999999876 3455644333211 1223456667789999999999999888999999996544433
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=83.06 E-value=3.6 Score=38.41 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhcccC---cCcccHHHHHHHHHHHhhh-cCCCCCChHHHHHHH
Q 023010 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAK-SEETPRPLNDVLRAS 246 (288)
Q Consensus 183 Iq~~G~~L~LPq~tiATAiVyfHRFYlr~S---~~~~d~~~VAaACLFLAcK-vEEtprkLRDII~va 246 (288)
..++|..|+|+..|...|.-.|++--..-. -..-+....-.||||.||. +|+..++|..|+..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 457899999999999999999999665411 1222355667777999997 467789999888764
No 39
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=81.92 E-value=5.9 Score=36.03 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhcccC---cCcccHHHHHHHHHHHhhhcCCCCCChHHHHH
Q 023010 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAKSEETPRPLNDVLR 244 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq~tiATAiVyfHRFYlr~S---~~~~d~~~VAaACLFLAcKvEEtprkLRDII~ 244 (288)
.+-|..+-..-++|..++.-|+-+.+.|.-.+. ..--.+++||+||+-+|+--...|+++.++..
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~ 83 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC 83 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 344678888889999999999999999965332 22335889999999999988888998876544
No 40
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=79.55 E-value=8.1 Score=36.75 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCChH----HHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhhhh
Q 023010 178 SYCAFIQNLGLRLELPQT----TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYH 251 (288)
Q Consensus 178 ~~~~fIq~~G~~L~LPq~----tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va~~Il~ 251 (288)
.+..-|+++|..|++++. -++|+.-+.=.- ...=+.+-+.-.+.+.|||.-||+.....+-++|+......-+
T Consensus 217 La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~-~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~qpq 293 (347)
T 2r7g_A 217 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQN-EYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPH 293 (347)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-CGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-ChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccc
Confidence 455669999999987763 344443332211 1223456667789999999999999888999999996444333
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=71.67 E-value=16 Score=37.51 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCChH----HHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhhhhc
Q 023010 178 SYCAFIQNLGLRLELPQT----TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHK 252 (288)
Q Consensus 178 ~~~~fIq~~G~~L~LPq~----tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va~~Il~k 252 (288)
.+..-|+.+|..|++++. -|+|+.-+.=.- ...=+.+-+.-.|.+.|||.-||+.....+-++|+......-+.
T Consensus 526 LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~-~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~qpq~ 603 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQN-EYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHA 603 (656)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH-CGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHh-hHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHhCCCC
Confidence 466779999999987753 344433222211 12224566677899999999999999899999999975554443
No 42
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=67.35 E-value=9.4 Score=34.23 Aligned_cols=52 Identities=12% Similarity=-0.021 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCChH-----------HHHHHHHHHHHhhcccCcCcccHHHHHHHHHHHhhh
Q 023010 180 CAFIQNLGLRLELPQT-----------TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231 (288)
Q Consensus 180 ~~fIq~~G~~L~LPq~-----------tiATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAcK 231 (288)
..||......++++.. +...|..++..-.+...+..|.|..||+||||+|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 3566666666654321 222233333333344557889999999999999975
No 43
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=59.29 E-value=22 Score=36.65 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=46.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhcc-----cCcCcccHHHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 023010 183 IQNLGLRLELPQTTIGTAMVLCHRFFVR-----RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (288)
Q Consensus 183 Iq~~G~~L~LPq~tiATAiVyfHRFYlr-----~S~~~~d~~~VAaACLFLAcKvEEtprkLRDII~va 246 (288)
..++|..|+|...|...|.-.|..-... .++.+-.....|+ .+|.||.+|+..++|-.|+..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHh
Confidence 4678999999999999999999987742 2334444444444 4777777899999999988765
No 44
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=50.27 E-value=62 Score=28.59 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCChHHH----HHHHHHHHHhhcccCcCcccHHHHHHHHHHHhh
Q 023010 179 YCAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAA 230 (288)
Q Consensus 179 ~~~fIq~~G~~L~LPq~ti----ATAiVyfHRFYlr~S~~~~d~~~VAaACLFLAc 230 (288)
...||......++++.... ..|..++.....-..+..|.|..||+||+.++.
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 204 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh
Confidence 4467777777788776432 234444444444555678999999999987775
No 45
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=37.19 E-value=82 Score=23.71 Aligned_cols=28 Identities=36% Similarity=0.666 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHH--HHhhcccC
Q 023010 182 FIQNLGLRLELPQTTIGTAMVLC--HRFFVRRS 212 (288)
Q Consensus 182 fIq~~G~~L~LPq~tiATAiVyf--HRFYlr~S 212 (288)
-+++++..|+||..+| +|+| +|||..|.
T Consensus 37 ~r~~La~~tGL~~~~I---qVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTI---IKFFQNQRYHVKHS 66 (71)
T ss_dssp HHHHHHHHSCCCHHHH---HHHHHHHHHHCCSS
T ss_pred HHHHHHHHhCCCHHHH---HHhhccceeeecCC
Confidence 4788999999998876 5677 68998774
Done!