Query 023012
Match_columns 288
No_of_seqs 152 out of 1782
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3E-33 6.4E-38 245.4 27.3 280 3-283 37-334 (358)
2 PRK11272 putative DMT superfam 100.0 1.9E-31 4.1E-36 230.0 28.1 254 3-281 31-289 (292)
3 PRK11689 aromatic amino acid e 100.0 2E-31 4.3E-36 230.2 26.8 261 3-282 27-292 (295)
4 TIGR00950 2A78 Carboxylate/Ami 100.0 1.1E-30 2.3E-35 221.9 27.0 244 4-272 14-259 (260)
5 PRK11453 O-acetylserine/cystei 100.0 1.2E-30 2.7E-35 225.7 27.6 252 3-280 27-290 (299)
6 PRK10532 threonine and homoser 100.0 3E-29 6.6E-34 216.3 27.4 250 4-282 36-286 (293)
7 PRK15430 putative chlorampheni 100.0 1.9E-29 4E-34 218.0 25.3 247 4-278 31-286 (296)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 1.5E-28 3.3E-33 213.1 25.5 258 6-285 29-301 (302)
9 KOG4510 Permease of the drug/m 100.0 2.5E-30 5.4E-35 208.1 3.2 267 4-279 60-327 (346)
10 TIGR03340 phn_DUF6 phosphonate 100.0 1.3E-26 2.9E-31 198.8 26.3 243 11-274 30-280 (281)
11 PTZ00343 triose or hexose phos 100.0 1.2E-25 2.7E-30 197.9 26.5 253 4-278 73-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 3.1E-25 6.8E-30 187.9 24.1 220 4-252 25-255 (256)
13 COG0697 RhaT Permeases of the 99.9 6.5E-24 1.4E-28 182.7 28.9 250 6-278 34-288 (292)
14 PF06027 DUF914: Eukaryotic pr 99.9 2.1E-23 4.6E-28 179.7 25.7 261 5-280 41-308 (334)
15 COG5006 rhtA Threonine/homoser 99.9 3E-22 6.4E-27 160.6 23.0 253 3-283 35-288 (292)
16 COG2962 RarD Predicted permeas 99.9 1.3E-21 2.8E-26 161.0 22.2 248 3-279 29-285 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 6.8E-21 1.5E-25 163.7 25.2 250 5-277 25-288 (290)
18 PF08449 UAA: UAA transporter 99.9 1.8E-19 3.9E-24 156.2 27.2 264 7-283 31-303 (303)
19 KOG2765 Predicted membrane pro 99.8 1.6E-19 3.5E-24 152.6 15.7 228 39-280 157-393 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.7 1.3E-16 2.9E-21 136.0 11.5 257 7-285 47-315 (316)
21 COG2510 Predicted membrane pro 99.7 4E-16 8.6E-21 112.6 11.6 132 144-276 4-138 (140)
22 PF04142 Nuc_sug_transp: Nucle 99.7 1.4E-14 3E-19 121.0 18.2 220 39-268 15-244 (244)
23 COG2510 Predicted membrane pro 99.6 6.4E-15 1.4E-19 106.4 9.8 110 3-112 26-138 (140)
24 KOG1581 UDP-galactose transpor 99.6 8E-13 1.7E-17 109.5 20.9 259 7-279 50-315 (327)
25 KOG1580 UDP-galactose transpor 99.6 3.6E-13 7.8E-18 107.5 17.1 222 42-278 86-314 (337)
26 KOG1444 Nucleotide-sugar trans 99.5 5.2E-12 1.1E-16 105.9 21.1 249 14-285 49-308 (314)
27 PF06800 Sugar_transport: Suga 99.5 1.3E-11 2.9E-16 102.8 22.9 217 39-274 43-268 (269)
28 KOG2234 Predicted UDP-galactos 99.5 3.5E-11 7.5E-16 102.5 23.9 225 42-281 93-326 (345)
29 PF00892 EamA: EamA-like trans 99.4 3.8E-13 8.2E-18 100.9 8.5 122 153-276 1-125 (126)
30 PF00892 EamA: EamA-like trans 99.4 2.6E-12 5.6E-17 96.3 10.1 109 3-112 14-125 (126)
31 PF13536 EmrE: Multidrug resis 99.4 4.1E-12 8.9E-17 93.8 10.5 104 13-117 2-110 (113)
32 KOG1443 Predicted integral mem 99.3 1.5E-10 3.2E-15 96.2 17.7 246 8-275 45-313 (349)
33 COG5070 VRG4 Nucleotide-sugar 99.3 1.5E-11 3.3E-16 97.5 11.3 223 45-282 72-301 (309)
34 KOG2766 Predicted membrane pro 99.3 1.9E-13 4.2E-18 110.3 0.2 254 7-281 47-303 (336)
35 TIGR03340 phn_DUF6 phosphonate 99.3 1.8E-10 3.8E-15 99.0 15.0 131 145-278 3-136 (281)
36 PF05653 Mg_trans_NIPA: Magnes 99.2 2.9E-10 6.2E-15 97.8 13.6 231 43-282 52-297 (300)
37 KOG4314 Predicted carbohydrate 99.2 2E-10 4.4E-15 89.6 10.0 215 48-282 60-281 (290)
38 KOG1442 GDP-fucose transporter 99.2 9.3E-11 2E-15 95.9 8.1 254 7-279 60-329 (347)
39 PRK15430 putative chlorampheni 99.2 9E-10 2E-14 95.3 14.8 135 140-277 5-145 (296)
40 PF03151 TPT: Triose-phosphate 99.1 1.2E-09 2.5E-14 85.1 11.4 133 144-276 1-152 (153)
41 TIGR00688 rarD rarD protein. T 99.1 2.7E-09 5.9E-14 90.4 13.4 133 143-277 2-142 (256)
42 KOG3912 Predicted integral mem 99.0 1.8E-08 3.8E-13 83.0 15.3 221 42-276 87-333 (372)
43 TIGR00803 nst UDP-galactose tr 99.0 3.4E-09 7.4E-14 87.8 11.0 208 66-274 3-221 (222)
44 PRK02971 4-amino-4-deoxy-L-ara 99.0 1.3E-08 2.9E-13 76.2 11.7 122 143-281 2-126 (129)
45 TIGR00950 2A78 Carboxylate/Ami 99.0 8.1E-09 1.7E-13 87.6 11.4 119 155-278 1-120 (260)
46 PLN00411 nodulin MtN21 family 98.9 2.1E-08 4.5E-13 88.6 13.7 138 141-278 11-157 (358)
47 KOG1583 UDP-N-acetylglucosamin 98.9 5.2E-08 1.1E-12 80.1 13.1 231 43-276 66-313 (330)
48 PRK15051 4-amino-4-deoxy-L-ara 98.8 1.9E-07 4.1E-12 68.3 12.5 64 49-112 45-108 (111)
49 PF13536 EmrE: Multidrug resis 98.8 5.5E-08 1.2E-12 71.6 9.0 80 202-282 31-111 (113)
50 PRK11272 putative DMT superfam 98.8 2.1E-07 4.6E-12 80.4 14.1 132 144-278 9-142 (292)
51 PRK13499 rhamnose-proton sympo 98.8 5.2E-06 1.1E-10 72.3 22.4 231 38-278 70-342 (345)
52 COG2962 RarD Predicted permeas 98.7 2.2E-07 4.7E-12 77.5 12.4 136 141-278 5-145 (293)
53 COG4975 GlcU Putative glucose 98.7 1E-08 2.3E-13 82.8 3.1 219 40-277 58-285 (288)
54 TIGR00817 tpt Tpt phosphate/ph 98.7 3.2E-07 7E-12 79.6 12.2 119 158-276 17-136 (302)
55 PTZ00343 triose or hexose phos 98.7 6.9E-07 1.5E-11 79.1 14.4 136 141-276 47-185 (350)
56 PRK15051 4-amino-4-deoxy-L-ara 98.7 5E-07 1.1E-11 66.1 11.1 62 216-277 48-109 (111)
57 KOG2922 Uncharacterized conser 98.7 2.1E-07 4.5E-12 78.4 10.2 230 42-280 65-309 (335)
58 PRK10532 threonine and homoser 98.7 4.7E-07 1E-11 78.2 12.6 111 4-115 172-283 (293)
59 PRK11453 O-acetylserine/cystei 98.6 5.1E-07 1.1E-11 78.3 12.3 125 146-278 7-133 (299)
60 TIGR00776 RhaT RhaT L-rhamnose 98.6 4.1E-07 8.9E-12 78.4 10.7 132 144-279 2-138 (290)
61 PRK11689 aromatic amino acid e 98.6 1.2E-06 2.6E-11 75.8 12.5 131 143-278 4-138 (295)
62 KOG1582 UDP-galactose transpor 98.5 1.3E-06 2.8E-11 71.9 10.6 206 57-280 122-335 (367)
63 COG0697 RhaT Permeases of the 98.5 3.2E-06 7E-11 72.4 13.4 142 140-282 4-148 (292)
64 PRK02971 4-amino-4-deoxy-L-ara 98.4 2.3E-06 5E-11 64.2 9.4 73 43-115 50-124 (129)
65 PF03151 TPT: Triose-phosphate 98.3 1.3E-05 2.8E-10 62.2 12.3 108 4-111 31-151 (153)
66 PRK10452 multidrug efflux syst 98.2 1.4E-05 3E-10 58.9 9.4 68 215-282 40-108 (120)
67 PF06027 DUF914: Eukaryotic pr 98.2 2.9E-05 6.3E-10 67.7 12.5 141 139-279 9-153 (334)
68 PF06800 Sugar_transport: Suga 98.1 3.8E-05 8.2E-10 64.5 11.6 113 172-284 12-129 (269)
69 PRK10452 multidrug efflux syst 98.1 3.5E-05 7.6E-10 56.8 8.8 70 44-113 33-103 (120)
70 PRK09541 emrE multidrug efflux 98.0 2.9E-05 6.3E-10 56.5 7.8 66 215-280 40-106 (110)
71 COG2076 EmrE Membrane transpor 98.0 3.6E-05 7.9E-10 54.8 8.1 69 43-111 32-101 (106)
72 KOG4510 Permease of the drug/m 98.0 6.9E-07 1.5E-11 73.3 -1.3 134 142-278 37-170 (346)
73 PRK09541 emrE multidrug efflux 98.0 6.8E-05 1.5E-09 54.5 8.8 69 44-112 33-102 (110)
74 PRK10650 multidrug efflux syst 98.0 0.00023 5E-09 51.5 11.3 68 44-111 38-106 (109)
75 PRK11431 multidrug efflux syst 97.9 0.00011 2.5E-09 52.8 9.1 68 44-111 32-100 (105)
76 PF08449 UAA: UAA transporter 97.9 0.00016 3.5E-09 62.8 11.6 122 158-280 15-139 (303)
77 PRK13499 rhamnose-proton sympo 97.8 0.00023 5E-09 62.2 11.1 133 140-277 4-153 (345)
78 COG2076 EmrE Membrane transpor 97.7 0.00015 3.3E-09 51.7 7.0 65 215-279 40-105 (106)
79 COG4975 GlcU Putative glucose 97.7 2.7E-05 5.7E-10 63.5 3.3 134 144-282 3-141 (288)
80 PRK11431 multidrug efflux syst 97.7 0.00023 4.9E-09 51.3 7.5 64 215-278 39-103 (105)
81 PRK10650 multidrug efflux syst 97.7 0.00069 1.5E-08 49.1 9.8 63 214-276 44-107 (109)
82 PF05653 Mg_trans_NIPA: Magnes 97.6 0.00016 3.4E-09 62.5 6.6 121 139-279 3-124 (300)
83 PF00893 Multi_Drug_Res: Small 97.6 0.00034 7.3E-09 49.4 7.0 60 45-104 33-93 (93)
84 PF04657 DUF606: Protein of un 97.6 0.0014 3E-08 49.9 10.8 104 7-110 29-138 (138)
85 PF04657 DUF606: Protein of un 97.6 0.00081 1.7E-08 51.2 9.3 129 145-273 3-137 (138)
86 PF06379 RhaT: L-rhamnose-prot 97.5 0.033 7.2E-07 48.2 18.7 228 39-277 71-340 (344)
87 PF00893 Multi_Drug_Res: Small 97.4 0.00084 1.8E-08 47.4 7.2 54 215-268 39-93 (93)
88 PF04142 Nuc_sug_transp: Nucle 97.4 0.00042 9E-09 58.1 6.5 81 201-281 13-93 (244)
89 COG5006 rhtA Threonine/homoser 97.4 0.0033 7.2E-08 51.8 10.9 61 51-111 220-280 (292)
90 PF10639 UPF0546: Uncharacteri 97.4 0.0017 3.7E-08 47.1 8.3 67 45-111 45-112 (113)
91 COG3238 Uncharacterized protei 97.3 0.0036 7.8E-08 47.7 10.0 136 141-276 3-145 (150)
92 PF10639 UPF0546: Uncharacteri 96.9 0.0081 1.7E-07 43.7 8.1 108 150-274 3-111 (113)
93 KOG2234 Predicted UDP-galactos 96.6 0.15 3.3E-06 44.3 14.7 135 143-277 15-164 (345)
94 KOG1580 UDP-galactose transpor 96.3 0.014 3E-07 47.7 6.6 74 38-111 238-311 (337)
95 KOG1581 UDP-galactose transpor 96.3 0.017 3.8E-07 48.9 7.2 108 5-112 199-312 (327)
96 PF06379 RhaT: L-rhamnose-prot 96.3 0.046 9.9E-07 47.4 9.8 143 139-283 3-159 (344)
97 KOG1441 Glucose-6-phosphate/ph 96.1 0.0041 8.9E-08 53.8 2.6 106 158-263 32-141 (316)
98 TIGR00803 nst UDP-galactose tr 95.8 0.029 6.2E-07 46.3 6.4 68 43-110 154-221 (222)
99 KOG2765 Predicted membrane pro 95.8 0.0077 1.7E-07 52.4 3.0 78 205-282 159-236 (416)
100 KOG4314 Predicted carbohydrate 95.2 0.0048 1E-07 48.9 -0.2 68 215-282 63-130 (290)
101 COG3238 Uncharacterized protei 95.0 0.48 1E-05 36.3 10.1 105 7-111 33-144 (150)
102 KOG2922 Uncharacterized conser 94.8 0.0079 1.7E-07 51.3 -0.1 126 137-282 15-141 (335)
103 PRK02237 hypothetical protein; 94.1 0.27 5.9E-06 35.1 6.4 48 233-280 61-108 (109)
104 PF07857 DUF1632: CEO family ( 93.9 2.7 5.9E-05 35.4 13.1 155 7-166 26-206 (254)
105 PF02694 UPF0060: Uncharacteri 92.7 0.38 8.3E-06 34.2 5.3 47 234-280 60-106 (107)
106 KOG1444 Nucleotide-sugar trans 91.9 5.5 0.00012 34.4 12.3 118 159-276 28-148 (314)
107 COG5070 VRG4 Nucleotide-sugar 91.0 1.7 3.8E-05 35.5 8.0 109 6-114 183-297 (309)
108 PF07857 DUF1632: CEO family ( 90.0 0.4 8.6E-06 40.3 3.8 129 144-279 1-136 (254)
109 PRK02237 hypothetical protein; 89.7 2.5 5.5E-05 30.2 7.0 49 65-113 56-105 (109)
110 PF02694 UPF0060: Uncharacteri 88.3 1.9 4.2E-05 30.7 5.6 55 60-114 49-104 (107)
111 KOG1582 UDP-galactose transpor 87.1 3 6.5E-05 35.2 6.9 110 7-116 219-335 (367)
112 KOG3912 Predicted integral mem 86.9 0.74 1.6E-05 38.9 3.4 67 211-277 92-158 (372)
113 KOG1443 Predicted integral mem 85.3 4.9 0.00011 34.6 7.5 74 206-279 85-158 (349)
114 COG1742 Uncharacterized conser 85.0 2 4.4E-05 30.4 4.3 48 233-280 60-107 (109)
115 KOG4831 Unnamed protein [Funct 84.7 2.7 5.8E-05 29.9 4.8 62 214-275 61-123 (125)
116 COG1742 Uncharacterized conser 84.5 12 0.00027 26.6 8.3 40 76-115 67-106 (109)
117 PF04342 DUF486: Protein of un 81.8 1.3 2.8E-05 31.5 2.3 29 246-274 77-105 (108)
118 KOG4831 Unnamed protein [Funct 81.2 4.6 0.0001 28.8 4.8 60 53-112 64-124 (125)
119 KOG1442 GDP-fucose transporter 78.5 2.8 6E-05 35.5 3.6 106 169-274 58-171 (347)
120 COG3169 Uncharacterized protei 78.3 6 0.00013 27.7 4.6 34 79-112 81-114 (116)
121 PF04342 DUF486: Protein of un 76.0 26 0.00057 25.1 9.2 48 65-112 59-107 (108)
122 COG3169 Uncharacterized protei 74.8 7.7 0.00017 27.2 4.4 31 246-276 84-114 (116)
123 KOG1583 UDP-N-acetylglucosamin 70.0 7.5 0.00016 33.0 4.1 50 65-114 266-315 (330)
124 COG3086 RseC Positive regulato 60.8 8.8 0.00019 29.1 2.6 51 226-276 69-121 (150)
125 COG3476 Tryptophan-rich sensor 60.0 69 0.0015 24.9 7.4 71 207-278 53-125 (161)
126 PF05297 Herpes_LMP1: Herpesvi 56.8 3.6 7.8E-05 34.8 0.0 67 43-109 24-93 (381)
127 KOG2766 Predicted membrane pro 54.2 1.5 3.3E-05 36.6 -2.5 136 139-277 14-150 (336)
128 PF07168 Ureide_permease: Urei 52.6 8.1 0.00018 33.3 1.4 125 149-275 2-144 (336)
129 PF01102 Glycophorin_A: Glycop 50.0 14 0.0003 27.3 2.2 24 262-285 74-97 (122)
130 COG3247 HdeD Uncharacterized c 48.3 1.4E+02 0.0031 23.9 14.2 158 89-277 15-177 (185)
131 TIGR02865 spore_II_E stage II 46.1 3.2E+02 0.0069 27.3 16.3 171 68-271 11-189 (764)
132 PF09656 PGPGW: Putative trans 44.8 53 0.0011 20.3 3.8 20 96-115 4-23 (53)
133 COG2323 Predicted membrane pro 42.2 1.7E+02 0.0037 24.2 7.6 79 9-90 4-82 (224)
134 PRK13108 prolipoprotein diacyl 37.7 1.5E+02 0.0032 27.6 7.2 26 257-282 254-279 (460)
135 TIGR01167 LPXTG_anchor LPXTG-m 36.6 54 0.0012 17.6 2.8 13 258-270 11-23 (34)
136 PF07123 PsbW: Photosystem II 35.4 58 0.0013 24.5 3.5 33 139-171 102-134 (138)
137 COG3086 RseC Positive regulato 35.1 76 0.0017 24.2 4.1 42 66-108 73-114 (150)
138 PF11023 DUF2614: Protein of u 33.3 1.6E+02 0.0036 21.3 5.3 24 90-113 5-28 (114)
139 PRK12437 prolipoprotein diacyl 30.0 50 0.0011 28.1 2.8 23 257-279 235-257 (269)
140 PF04246 RseC_MucC: Positive r 29.8 34 0.00074 25.6 1.6 22 231-252 67-88 (135)
141 PF08693 SKG6: Transmembrane a 29.7 35 0.00076 19.8 1.2 17 264-280 22-38 (40)
142 PF10753 DUF2566: Protein of u 27.4 1.6E+02 0.0035 18.3 4.1 32 73-104 8-39 (55)
143 PRK02935 hypothetical protein; 27.2 1E+02 0.0023 22.0 3.4 26 89-114 5-30 (110)
144 PF11381 DUF3185: Protein of u 26.5 23 0.0005 22.5 0.1 19 97-115 1-19 (59)
145 PF05977 MFS_3: Transmembrane 25.8 5.7E+02 0.012 24.1 12.4 34 240-273 355-389 (524)
146 PF11044 TMEMspv1-c74-12: Plec 25.5 75 0.0016 18.7 2.1 17 257-273 2-18 (49)
147 PF03073 TspO_MBR: TspO/MBR fa 24.9 3.1E+02 0.0067 20.7 6.8 42 215-256 53-94 (148)
148 PF04246 RseC_MucC: Positive r 24.3 1.5E+02 0.0032 22.1 4.2 44 66-110 66-109 (135)
149 cd08554 Cyt_b561 Eukaryotic cy 23.8 3E+02 0.0065 20.2 8.3 52 97-161 43-94 (131)
150 PRK10862 SoxR reducing system 23.0 75 0.0016 24.5 2.4 15 235-249 78-92 (154)
151 cd01324 cbb3_Oxidase_CcoQ Cyto 22.7 72 0.0016 19.2 1.8 25 260-284 14-38 (48)
152 PF06570 DUF1129: Protein of u 22.6 4.2E+02 0.009 21.4 10.1 25 45-69 150-174 (206)
153 PF03729 DUF308: Short repeat 22.4 2.1E+02 0.0046 18.0 6.6 18 99-116 2-19 (72)
154 PF05545 FixQ: Cbb3-type cytoc 21.3 1.3E+02 0.0028 18.0 2.7 21 263-283 16-36 (49)
155 PRK00052 prolipoprotein diacyl 21.2 88 0.0019 26.6 2.7 22 257-278 237-258 (269)
156 PF11628 TCR_zetazeta: T-cell 21.0 1.1E+02 0.0025 16.8 2.1 19 78-96 13-31 (33)
157 TIGR00544 lgt prolipoprotein d 20.8 91 0.002 26.7 2.7 22 257-278 246-267 (278)
158 PF15102 TMEM154: TMEM154 prot 20.6 62 0.0013 24.7 1.4 19 264-282 68-86 (146)
159 PRK11469 hypothetical protein; 20.3 1.2E+02 0.0026 24.3 3.1 43 233-275 42-85 (188)
160 PRK10110 bifunctional PTS syst 20.1 7.6E+02 0.016 23.5 9.0 30 202-231 394-424 (530)
161 COG4736 CcoQ Cbb3-type cytochr 20.1 92 0.002 19.8 1.9 24 261-284 14-37 (60)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3e-33 Score=245.38 Aligned_cols=280 Identities=14% Similarity=0.143 Sum_probs=206.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCC-CC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PI--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
..+++|..+.++|+.++.+++.++.+.+++ +. +.+++.+..+.+.++++...+.+++.+++++++++++++.+++|+
T Consensus 37 ~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~ 116 (358)
T PLN00411 37 SKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPA 116 (358)
T ss_pred HCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence 357899999999999999988887654432 21 122334455666666666677789999999999999999999999
Q ss_pred HHHHHHHHH------hcccchHHHHHHHHHHHHhhhheeccccccccc--CCCCCCCccccc-ccccchhhHHHHHHHHH
Q 023012 80 MASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAV--SGGLVKPGEAIS-LNVRGSDHMLAVLVGLF 150 (288)
Q Consensus 80 ~~~ll~~~~------l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~G~l~~l~ 150 (288)
++.++++++ +|||+++++++|++++++|+.++..++...... ++..++..+... +.....+...|.++.+.
T Consensus 117 ~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~ 196 (358)
T PLN00411 117 LTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196 (358)
T ss_pred HHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHH
Confidence 999999999 699999999999999999999877543211000 000000000000 00112233669999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--c----cCchHHHHHHHHHHHHHHHHHHHHHH
Q 023012 151 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--V----LPSFYSFLLMLVLSILAFFAEVLLAR 224 (288)
Q Consensus 151 ~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~gi~~~~~~~~~~~ 224 (288)
++++|+++.++.|+..++.++......++...+.+.........++. . ..+.. ...+++.++.+.++|.+|++
T Consensus 197 aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~lw~~ 275 (358)
T PLN00411 197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITSVYYVIHSW 275 (358)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999766554555556666666655554444433221 1 11222 33466677766699999999
Q ss_pred hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012 225 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283 (288)
Q Consensus 225 al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 283 (288)
++++.+|++++.+.+++|+++.+++++++||++++.+++|+++|++|+.+..+.++|+.
T Consensus 276 ~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 276 TVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999887655543
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=229.99 Aligned_cols=254 Identities=17% Similarity=0.124 Sum_probs=204.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHH-hhcccchhHHHHhhhHHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFVYSI-QRLPLSQATVLSFTAPIM 80 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~-~~~~~~~~~~i~~~~P~~ 80 (288)
.+++||.+++++|+.++.+++.++...++++. ++++.++.....|... ..+..+++.+. +++++++++++.++.|++
T Consensus 31 ~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~ 109 (292)
T PRK11272 31 VESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLF 109 (292)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 45899999999999999998888776655443 2344444455555444 56778888998 999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 023012 81 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 160 (288)
Q Consensus 81 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v 160 (288)
+.+++++ +|||+++++++|+.++++|+.++..++. .+.+..|++++++++++||.+.+
T Consensus 110 ~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~---------------------~~~~~~G~l~~l~a~~~~a~~~~ 167 (292)
T PRK11272 110 TLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN---------------------LSGNPWGAILILIASASWAFGSV 167 (292)
T ss_pred HHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc---------------------cccchHHHHHHHHHHHHHHHHHH
Confidence 9999985 7999999999999999999988754321 01245799999999999999999
Q ss_pred HHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc-cCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeeh
Q 023012 161 LIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FV-LPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANV 237 (288)
Q Consensus 161 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~ 237 (288)
..|+..+ .+ +.....++...+.+...+.....+. +. .++...|..+.+.++++. +++.+|++++++.++++++.+
T Consensus 168 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~ 245 (292)
T PRK11272 168 WSSRLPL-PV-GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY 245 (292)
T ss_pred HHHhcCC-Cc-chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 9999653 33 3344556666666555554443332 22 246788999999998865 999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012 238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 281 (288)
Q Consensus 238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 281 (288)
.++||+++.+++++++||+++..+++|+.+++.|+.+..++++|
T Consensus 246 ~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 246 AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988776654
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=2e-31 Score=230.15 Aligned_cols=261 Identities=15% Similarity=0.109 Sum_probs=195.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh----hcccchhHHHHhhhH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ----RLPLSQATVLSFTAP 78 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~i~~~~P 78 (288)
.+++||..+.+.|+.++.+++.++..+ +. .+++.++....+++.......+++.+++ +.++++++++.+++|
T Consensus 27 ~~~~~P~~~~~~R~~~a~l~l~~~~~~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~P 102 (295)
T PRK11689 27 SESLGPVGGAAMIYSVSGLLLLLTVGF---PR-LRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWP 102 (295)
T ss_pred HccCChHHHHHHHHHHHHHHHHHHccc---cc-cccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhH
Confidence 568999999999999999888765321 11 1223344556666666677777777765 467888899999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012 79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 158 (288)
Q Consensus 79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~ 158 (288)
+++.+++++++|||+++++++|++++++|+.++..++..... ++.. .....+..|+++++.++++||.+
T Consensus 103 i~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~---------~~~~--~~~~~~~~G~~~~l~aa~~~A~~ 171 (295)
T PRK11689 103 SLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL---------AELI--NNIASNPLSYGLAFIGAFIWAAY 171 (295)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh---------hhhh--hccccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999866421100 0000 01112456999999999999999
Q ss_pred HHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012 159 YCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV 237 (288)
Q Consensus 159 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~ 237 (288)
.++.|+..++ .++.... ....+ +...+.....++. ...+...|..+++.++.+.++|.+|++++|+.++++++.+
T Consensus 172 ~v~~k~~~~~-~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~ 247 (295)
T PRK11689 172 CNVTRKYARG-KNGITLF--FILTA-LALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATA 247 (295)
T ss_pred HHHHhhccCC-CCchhHH--HHHHH-HHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999997654 4444332 22222 2222222222222 2346677888888886666999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
.+++|+++.+++++++||+++..+++|+++|+.|+.+...+++++
T Consensus 248 ~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 248 SYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence 999999999999999999999999999999999998776655443
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=1.1e-30 Score=221.92 Aligned_cols=244 Identities=22% Similarity=0.241 Sum_probs=201.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI 83 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l 83 (288)
++.|+.+..+.|...+.+++.+..+++ .+++++.+....+++....++.++++|++++++++++++.++.|+++.+
T Consensus 14 ~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~ 89 (260)
T TIGR00950 14 GQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTL 89 (260)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHH
Confidence 468999999999999988887765554 2333445566677777789999999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012 84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK 163 (288)
Q Consensus 84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k 163 (288)
++++++|||+++++++|+.++++|+.++..++. .+.+..|+.+++.++++|+.+.+..|
T Consensus 90 ~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~---------------------~~~~~~G~~~~l~a~~~~a~~~~~~k 148 (260)
T TIGR00950 90 LSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN---------------------LSINPAGLLLGLGSGISFALGTVLYK 148 (260)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc---------------------ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999865431 12356899999999999999999999
Q ss_pred hcccCCCCc-hhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhH
Q 023012 164 AGANASDQP-LVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIE 241 (288)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~ 241 (288)
+..++.++. .....+....+.+...+.....++....+..+|..+++.++++. +++.+|++++++.++++++.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~ 228 (260)
T TIGR00950 149 RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAE 228 (260)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 976433322 22333456666666665555444444446778888899998865 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHhHHHHHHHHH
Q 023012 242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSV 272 (288)
Q Consensus 242 pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~ 272 (288)
|+++.+++++++||+++..+++|+.+++.|+
T Consensus 229 pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 229 PLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999885
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=1.2e-30 Score=225.71 Aligned_cols=252 Identities=16% Similarity=0.188 Sum_probs=192.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhh-cccchhHHHHhhhHHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFVYSIQR-LPLSQATVLSFTAPIM 80 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~-~~~~~~~~i~~~~P~~ 80 (288)
.+++||.++.++|+.++.+.+.++..+++. + ++.....++.. .....+++.+.++ .++++++++.+++|++
T Consensus 27 ~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~------~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~ 99 (299)
T PRK11453 27 LHNMPPLMLAGLRFMLVAFPAIFFVARPKV------P-LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFF 99 (299)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCC------c-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHH
Confidence 467999999999999987766554422111 1 22333444433 3455577889988 6889999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 023012 81 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 160 (288)
Q Consensus 81 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v 160 (288)
+.+++++++|||++++++++++++++|+.++..++.+. ...+..|+++++.++++|+.+.+
T Consensus 100 ~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-------------------~~~~~~G~~l~l~aal~~a~~~v 160 (299)
T PRK11453 100 TIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG-------------------QHVAMLGFMLTLAAAFSWACGNI 160 (299)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC-------------------cchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887553211 12345799999999999999999
Q ss_pred HHHhcccCCCCch--hHHHHHHHHHHHhhhHHhHhcCc-------cccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccC
Q 023012 161 LIKAGANASDQPL--VTVFSFGILASPAAGICLFFFEE-------FVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEK 230 (288)
Q Consensus 161 ~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~ 230 (288)
+.|+..++.+++. ....+.+..+.+.........++ +...+...|..+++.+++++ ++|.+|++++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~ 240 (299)
T PRK11453 161 FNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE 240 (299)
T ss_pred HHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999654332222 22333444433322222222221 12346788999999998876 99999999999999
Q ss_pred CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
+.+++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+..+.++
T Consensus 241 a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 241 TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999987766554
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=3e-29 Score=216.32 Aligned_cols=250 Identities=14% Similarity=0.049 Sum_probs=194.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI 83 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l 83 (288)
+++||.++.++|++++.+++.++.+++++ . .+++.++.....++.....+.+++++++++|++.++++.+++|+++.+
T Consensus 36 ~~~~~~~~~~~R~~~a~l~l~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~l 113 (293)
T PRK10532 36 PLVGAPGVTALRLALGTLILIAIFKPWRL-R-FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVAL 113 (293)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhHHhc-c-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 46899999999999999888776544332 2 233445556677777788889999999999999999999999999998
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012 84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK 163 (288)
Q Consensus 84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k 163 (288)
++ +||+++ ..++.++++|+.++..++.+. +..+..|+++++.++++|+.+.+..|
T Consensus 114 l~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~-------------------~~~~~~G~ll~l~aa~~~a~~~v~~r 168 (293)
T PRK10532 114 FS----SRRPVD--FVWVVLAVLGLWFLLPLGQDV-------------------SHVDLTGAALALGAGACWAIYILSGQ 168 (293)
T ss_pred Hh----cCChHH--HHHHHHHHHHHheeeecCCCc-------------------ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 87 366554 455677899998887543211 12345799999999999999999999
Q ss_pred hcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHH
Q 023012 164 AGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEV 242 (288)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~p 242 (288)
+..++ .++.... +....+.+...+.....++....+...|..+++.|++++ ++|.+|++++++.++++++.+.++||
T Consensus 169 ~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~P 246 (293)
T PRK10532 169 RAGAE-HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEP 246 (293)
T ss_pred HHhcc-CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHH
Confidence 97653 4455444 344555555444444333222345566777788998866 99999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
+++.+++++++||+++..+++|+.+|++|++...++.+|+
T Consensus 247 v~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 247 ALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999887765554
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=1.9e-29 Score=217.96 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=183.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCC-C----CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQP-I----FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 78 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P 78 (288)
+++||.++.++|+.++.+++.++...+++. . .++++.+.....+++..+.++.++++|++++|+++++++.+++|
T Consensus 31 ~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P 110 (296)
T PRK15430 31 YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINP 110 (296)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 568999999999999988777665444321 1 11222223344667777889999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012 79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 158 (288)
Q Consensus 79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~ 158 (288)
+++.+++++++|||+++++++|++++++|+.++..++. +.. +++++++++||.|
T Consensus 111 i~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~----------------------~~~----~~~l~aa~~~a~~ 164 (296)
T PRK15430 111 LVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG----------------------SLP----IIALGLAFSFAFY 164 (296)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC----------------------Ccc----HHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865421 011 3578899999999
Q ss_pred HHHHHhcccCCC-CchhHHHHHHHHHHHhhhHHhHhcCccc--cCch-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012 159 YCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEFV--LPSF-YSFLLMLVLSILAFFAEVLLARGLQLEKTSKV 234 (288)
Q Consensus 159 ~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~ 234 (288)
.+..|+..++.. .......+....+...... ....+.. ..++ ..+..+...|+.+.+++.+|++++++.+++++
T Consensus 165 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~ 242 (296)
T PRK15430 165 GLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA--IADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL 242 (296)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH--HccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999643211 1122222333333222111 1111111 1122 23444555566666999999999999999999
Q ss_pred eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+.+.+++|+++.+++++++||+|++.+++|+++|++|+.+...+
T Consensus 243 s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887776543
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.5e-28 Score=213.09 Aligned_cols=258 Identities=13% Similarity=0.027 Sum_probs=200.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012 6 IPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA 84 (288)
Q Consensus 6 ~~~~~~~~~R~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll 84 (288)
.+|..+++.|+.++.+...+.... .+++...++++++.+...|++...+..+.++++++++++.++++.++.|++++++
T Consensus 29 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll 108 (302)
T TIGR00817 29 PYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVL 108 (302)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHH
Confidence 579999999999988776555221 1222233455677788888888888899999999999999999999999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023012 85 ARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA 164 (288)
Q Consensus 85 ~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~ 164 (288)
+++++|||+++++++++++++.|+.+....+ .+.+..|++++++++++|+++.+..|+
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------------------~~~~~~G~~~~l~a~~~~a~~~v~~k~ 166 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------------------LSFNWAGFLSAMISNITFVSRNIFSKK 166 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------------------ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753221 123467999999999999999999999
Q ss_pred cccC-CCCchhHHHHHHHHHHHhhhHHhHhcCccccCc--h----------HHHHHHHHHHHHHH-HHHHHHHHhhcccC
Q 023012 165 GANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVLPS--F----------YSFLLMLVLSILAF-FAEVLLARGLQLEK 230 (288)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~l~~~gi~~~-~~~~~~~~al~~~~ 230 (288)
..++ +.++.....++...+.+...+.....++.+... . ..+...+..+.... ..+.+++.++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 246 (302)
T TIGR00817 167 AMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVS 246 (302)
T ss_pred hhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6641 345677888888888877777665444322110 0 01111222222222 33356678999999
Q ss_pred CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012 231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285 (288)
Q Consensus 231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 285 (288)
+.+.+...+++|+++.+++++++||++|..+++|..++++|+.++.+.|+||+++
T Consensus 247 a~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 247 PLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred chHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999999999999999999988877666554
No 9
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.96 E-value=2.5e-30 Score=208.09 Aligned_cols=267 Identities=22% Similarity=0.355 Sum_probs=229.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI 83 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l 83 (288)
-+.+|.+..-.|++.-+++..+....+++....+++.++.++++|+.++.+....|||++|.+.+++++|.+++|.++.+
T Consensus 60 ~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~i 139 (346)
T KOG4510|consen 60 LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTII 139 (346)
T ss_pred hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHH
Confidence 35799999999988887777776666666555666667788999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012 84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK 163 (288)
Q Consensus 84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k 163 (288)
+++.++|||.++.+.++..+.+.||+++.+|..-.+.+++ ..++.....+..|.+.++.++++.|--+++.|
T Consensus 140 faw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~--------g~~~s~~~~~~~gt~aai~s~lf~asvyIilR 211 (346)
T KOG4510|consen 140 FAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE--------GEDSSQVEYDIPGTVAAISSVLFGASVYIILR 211 (346)
T ss_pred HHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc--------ccccccccccCCchHHHHHhHhhhhhHHHHHH
Confidence 9999999999999999999999999999999865543221 11111235566778888999999999999999
Q ss_pred hcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccC-chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012 164 AGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242 (288)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~p 242 (288)
++.| +.+......++.+.+.+.+++.....+.+..| ...+|.....+|+++++++++...++++..+..++...+.+.
T Consensus 212 ~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dv 290 (346)
T KOG4510|consen 212 YIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDV 290 (346)
T ss_pred Hhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHH
Confidence 9766 45566777788888888888877777777777 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
+++.++++++|||.||++.|.|+++++.+.++...+|
T Consensus 291 vfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 291 VFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 9999999999999999999999999999988866543
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=1.3e-26 Score=198.80 Aligned_cols=243 Identities=14% Similarity=0.042 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH
Q 023012 11 TVFMRCTVTLILSYLWLRRS--GQPIF-GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 87 (288)
Q Consensus 11 ~~~~R~~~a~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~ 87 (288)
..+++.....+++.++...+ +++.. .+++++.....++.....+..++++|+++.++++++++.++.|+++.+++++
T Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~ 109 (281)
T TIGR03340 30 FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATL 109 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHH
Confidence 34777777777777665543 22222 2345555677788888899999999999999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023012 88 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN 167 (288)
Q Consensus 88 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~ 167 (288)
++|||+++++++|+.+++.|+.++..++.+ ..+..|+.+++.++++|+.|.+..|+..+
T Consensus 110 ~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---------------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~ 168 (281)
T TIGR03340 110 TLGETLSPLAWLGILIITLGLLVLGLSRFA---------------------QHRRKAYAWALAAALGTAIYSLSDKAAAL 168 (281)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccccc---------------------ccchhHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999999999999999999988654311 12235777899999999999999998543
Q ss_pred CCCCchhHH---HHHHHHHHHhhhHHhHhcCccc-cCchHHHHHHHHHHHH-HHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012 168 ASDQPLVTV---FSFGILASPAAGICLFFFEEFV-LPSFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEV 242 (288)
Q Consensus 168 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~-~~~~~~~~~~al~~~~~~~~~~~~~~~p 242 (288)
+.++..... .+................++.. .+....+..+.+.+.+ +.++|.+|++++++.++++++.+.+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~p 248 (281)
T TIGR03340 169 GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSI 248 (281)
T ss_pred chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHH
Confidence 222211111 1111111111111111111111 1223334444555544 5699999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
+++.+++++++||+++..+++|+.+++.|+.+
T Consensus 249 v~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 249 VFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999875
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1.2e-25 Score=197.92 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=195.4
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHHHHh--CCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 4 QSIP-LFETVFMRCTVTLILSYLWLRRS--GQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 4 ~~~~-~~~~~~~R~~~a~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
+++| |+.++.+|++++.++...+...+ +++... +++.++.++..|+++.......+.|+++++++.+.++..+.|+
T Consensus 73 ~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pv 152 (350)
T PTZ00343 73 NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPV 152 (350)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence 4578 99999999999987655443221 112122 3345667888888888777777899999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 023012 80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY 159 (288)
Q Consensus 80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~ 159 (288)
++++++++++|||++++++.++++++.|+.+....+. ..++.|+++++++++++++++
T Consensus 153 ft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----------------------~~~~~G~~~~l~s~~~~a~~~ 210 (350)
T PTZ00343 153 FTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL----------------------HFTWLAFWCAMLSNLGSSLRS 210 (350)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc----------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999874331 235789999999999999999
Q ss_pred HHHHhcccCCC------CchhHHHHHHHHHHHhhhHHhHhcCccc--c--------CchHHHHHHHHHHHHHHHHHHHHH
Q 023012 160 CLIKAGANASD------QPLVTVFSFGILASPAAGICLFFFEEFV--L--------PSFYSFLLMLVLSILAFFAEVLLA 223 (288)
Q Consensus 160 v~~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~l~~~gi~~~~~~~~~~ 223 (288)
++.|+..++.+ ++.....+....+.++.++.....+... . .+...+..+.+..+.+.+.+.+++
T Consensus 211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n 290 (350)
T PTZ00343 211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYN 290 (350)
T ss_pred HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 99999765432 2333344446677777766655443211 0 011112233333444568888887
Q ss_pred H----hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 224 R----GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 224 ~----al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
. ++++.++.+.+...+++|+++++.+++++||++|+.+++|+++++.|+.++.+.
T Consensus 291 ~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 291 EVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 4 999999999999999999999999999999999999999999999999988765
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=3.1e-25 Score=187.93 Aligned_cols=220 Identities=14% Similarity=0.075 Sum_probs=164.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCC------C--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQP------I--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF 75 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~ 75 (288)
+++||.++.++|+.++.+++.++...++++ . .++++++.....++++...++.++++|++++++++++++.+
T Consensus 25 ~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~ 104 (256)
T TIGR00688 25 KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYL 104 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 469999999999999988877655333221 1 11222334567788888899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 023012 76 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITG 155 (288)
Q Consensus 76 ~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~ 155 (288)
++|+++++++++++|||+++++++++.++++|+.++..++. +.. .+++.++++|
T Consensus 105 ~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----------------------~~~----~~~l~aa~~~ 158 (256)
T TIGR00688 105 INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG----------------------SLP----WEALVLAFSF 158 (256)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC----------------------Cch----HHHHHHHHHH
Confidence 99999999999999999999999999999999988765421 011 3568899999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--cc-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 023012 156 GISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VL-PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS 232 (288)
Q Consensus 156 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~ 232 (288)
+.+.+..|+..+ .++ ...... .....+.........+.. .. +...+|..++..|+.+.++|.++.+++|+.+++
T Consensus 159 a~~~i~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~ 235 (256)
T TIGR00688 159 TAYGLIRKALKN-TDL-AGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLN 235 (256)
T ss_pred HHHHHHHhhcCC-CCc-chHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 999999999643 332 222221 122222222221111111 11 223488888888988779999999999999999
Q ss_pred ceeehhhhHHHHHHHHHHHh
Q 023012 233 KVANVQYIEVALTQLWGMGL 252 (288)
Q Consensus 233 ~~~~~~~~~pv~~~l~~~~~ 252 (288)
+++.+.+++|+++.+++++.
T Consensus 236 ~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 236 LLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.94 E-value=6.5e-24 Score=182.74 Aligned_cols=250 Identities=22% Similarity=0.222 Sum_probs=197.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012 6 IPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA 84 (288)
Q Consensus 6 ~~~~~~~~~R~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll 84 (288)
.++....+.|...+.+...+...+++. .....++.++....+++....++.+++.+.++++++.++++.++.|+++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 113 (292)
T COG0697 34 DPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALL 113 (292)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 566777778999888884444443321 2222222346677888888899999999999999999999999999999999
Q ss_pred HH-HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012 85 AR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK 163 (288)
Q Consensus 85 ~~-~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k 163 (288)
++ +++|||++++++.++.+++.|+.++..++..+. .. ...|+++++.++++++.+.+..|
T Consensus 114 ~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~------------------~~-~~~g~~~~l~a~~~~a~~~~~~~ 174 (292)
T COG0697 114 AVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG------------------IL-SLLGLLLALAAALLWALYTALVK 174 (292)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch------------------hH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 667999999999999999999999998874321 01 67999999999999999999999
Q ss_pred hcccCCCCchhHHH-HHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhh
Q 023012 164 AGANASDQPLVTVF-SFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYI 240 (288)
Q Consensus 164 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~ 240 (288)
+.. +.++..... +........... ....+. .+.+...|..+.+.|+.+. +++.++++++++.++.+++.+.++
T Consensus 175 ~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (292)
T COG0697 175 RLS--RLGPVTLALLLQLLLALLLLLL--FFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLL 250 (292)
T ss_pred Hhc--CCChHHHHHHHHHHHHHHHHHH--HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 865 333444443 333312212111 111222 2346788999999998877 899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 241 EVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 241 ~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+|+++.++++++++|+++..+++|+.+++.|+.+...+
T Consensus 251 ~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 251 EPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999987776
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.93 E-value=2.1e-23 Score=179.65 Aligned_cols=261 Identities=16% Similarity=0.153 Sum_probs=200.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH
Q 023012 5 SIPLFETVFMRCTVTLILSYLWLRRSGQPI---FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA 81 (288)
Q Consensus 5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~ 81 (288)
+.|..|..+...+...+..-....+++++. ..++++|+ -++.+++-..++.+...|++|++.+.++++..+.-+++
T Consensus 41 ~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~-y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~ 119 (334)
T PF06027_consen 41 NIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWK-YFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFV 119 (334)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHH-HHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHH
Confidence 345566555544444433322333333221 12344444 44557888999999999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023012 82 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 161 (288)
Q Consensus 82 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~ 161 (288)
++++++++|||.++.|++|+.+++.|+.++...|..... ++..+++...|+++++.++++||+++++
T Consensus 120 ~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~-------------~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 120 MILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS-------------DSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc-------------cCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887754311 1123467889999999999999999999
Q ss_pred HHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc--cc--cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012 162 IKAGANASDQPLVTVFSFGILASPAAGICLFFFEE--FV--LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV 237 (288)
Q Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~ 237 (288)
.++..++ .+........++.+.+++.+.....+. .. ..+...+..++..++..+.-|.+....++..+|+..+.-
T Consensus 187 ~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLs 265 (334)
T PF06027_consen 187 EEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLS 265 (334)
T ss_pred HHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehH
Confidence 9998764 456667777778888777765544331 11 123444555555556666888888999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
..+..+++.+++++++|+++++..++|.++|+.|.++++..++
T Consensus 266 LLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 266 LLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 9999999999999999999999999999999999998876543
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.91 E-value=3e-22 Score=160.59 Aligned_cols=253 Identities=14% Similarity=0.064 Sum_probs=204.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMAS 82 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ 82 (288)
.+.++|...+.+|..++.++++.+.+..+++ ..++++..+..-|......|.+||.+++.+|.+.+..+.++-|+...
T Consensus 35 FP~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA 112 (292)
T COG5006 35 FPLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVA 112 (292)
T ss_pred ccccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHH
Confidence 3567888999999999999988877644432 33456778888999999999999999999999999999999999988
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 023012 83 IAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI 162 (288)
Q Consensus 83 ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~ 162 (288)
+++. -+.+..+.+.+++.|..++...+.. ....+..|..+++.++.||+.|.+..
T Consensus 113 ~~~s------Rr~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 113 LLSS------RRLRDFVWVALAVLGIWLLLPLGQS-------------------VWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HHhc------cchhhHHHHHHHHHHHHhheeccCC-------------------cCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 7763 2445666677788888777544311 13467899999999999999999999
Q ss_pred HhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhH
Q 023012 163 KAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIE 241 (288)
Q Consensus 163 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~ 241 (288)
||..+ .++....+..-+..+.++.+++..........++.....-+..++++. +.|.+-..++++.+....+.+.++|
T Consensus 168 ~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLe 246 (292)
T COG5006 168 QRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLE 246 (292)
T ss_pred chhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhh
Confidence 99764 455555666666777777666666444444457788888888999977 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012 242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283 (288)
Q Consensus 242 pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 283 (288)
|.++.+.+++++||.+|..||.|+..|+++..-..+..||+.
T Consensus 247 Pa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 247 PALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999999999999999999999999886665544443
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=161.00 Aligned_cols=248 Identities=20% Similarity=0.185 Sum_probs=200.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhh
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTA 77 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~ 77 (288)
.++.|+.|+...|...+.+++.......|+. ..++++......+.+.....++..|.+|.++-..-+++.-++.+
T Consensus 29 l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~In 108 (293)
T COG2962 29 LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFIN 108 (293)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHH
Confidence 5789999999999999988776654433321 23344445567788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 023012 78 PIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGI 157 (288)
Q Consensus 78 P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~ 157 (288)
|++.++++++++|||+|+.|++++.++.+||........ .-.+.. +.=+++|+.
T Consensus 109 PL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g----------------------~lpwva----l~la~sf~~ 162 (293)
T COG2962 109 PLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG----------------------SLPWVA----LALALSFGL 162 (293)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC----------------------CCcHHH----HHHHHHHHH
Confidence 999999999999999999999999999999988766542 224444 445668999
Q ss_pred HHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccc---c-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 023012 158 SYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV---L-PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSK 233 (288)
Q Consensus 158 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~ 233 (288)
|....|+.. .++.+-...-...-.+..+......++.. . .+...+..+...|..+.++..++..+-|+.+-+.
T Consensus 163 Ygl~RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~ 239 (293)
T COG2962 163 YGLLRKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLST 239 (293)
T ss_pred HHHHHHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHH
Confidence 999988842 33444444455555555555555443332 1 3677888899999999999999999999999999
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
.+.++|.+|....+++++++||+++..+.+..+.|..|..+.....
T Consensus 240 ~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 240 LGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877653
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.89 E-value=6.8e-21 Score=163.72 Aligned_cols=250 Identities=14% Similarity=0.051 Sum_probs=185.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHH
Q 023012 5 SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASI 83 (288)
Q Consensus 5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~l 83 (288)
+.++.++. |..++.+++..+....+.+.+..++....-.+.|.....++.+++.|+++++.+.+..+.+ +.|++..+
T Consensus 25 g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l 102 (290)
T TIGR00776 25 GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTL 102 (290)
T ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 46666665 7777777665554433332222244444566777778889999999999999999999988 88899999
Q ss_pred HHHHHhcccchHHH----HHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 023012 84 AARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY 159 (288)
Q Consensus 84 l~~~~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~ 159 (288)
.+.+++|||.++++ .+|+++++.|+.++...+.++. ..++ ..+...|+.++++++++|+.+.
T Consensus 103 ~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~------------~~~~--~~~~~~Gi~~~l~sg~~y~~~~ 168 (290)
T TIGR00776 103 FGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA------------GIKS--EFNFKKGILLLLMSTIGYLVYV 168 (290)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc------------cccc--ccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999998865542210 0000 0123679999999999999999
Q ss_pred HHHHhcccCCCCchhHHHHHHH----HHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcce
Q 023012 160 CLIKAGANASDQPLVTVFSFGI----LASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQ-LEKTSKV 234 (288)
Q Consensus 160 v~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~-~~~~~~~ 234 (288)
+..|+.. .++....+.+.. .+.+..... ..+ .+...+.+...+..|++..+++.+|..+.+ +.++++.
T Consensus 169 ~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~ 241 (290)
T TIGR00776 169 VVAKAFG---VDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATS 241 (290)
T ss_pred HHHHHcC---CCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhH
Confidence 9999852 345555333333 232222211 011 112333433344488887799999999999 9999999
Q ss_pred eehhhhHHHHHHHHHHHhhccCCchhhH----hHHHHHHHHHHHHHH
Q 023012 235 ANVQYIEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMY 277 (288)
Q Consensus 235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~ 277 (288)
+.+.+.+|+.+.+++++++||+.+..|+ +|+++++.|+.+...
T Consensus 242 ~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 242 FSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999887654
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.87 E-value=1.8e-19 Score=156.19 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=213.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 86 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~ 86 (288)
.|..+++..+....+...+.....+++.. ++...+.....++....+..+-..|++++|.+.-.++.+..|+.+++++.
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~ 109 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKS-RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGV 109 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCC-CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH
Confidence 37788889888888777766555442222 33334566777888899999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012 87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 166 (288)
Q Consensus 87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~ 166 (288)
+++|+|.+++|++++++..+|+.+....+....+ +.+........|+.+.+++.++.+...+..++..
T Consensus 110 l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~------------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~ 177 (303)
T PF08449_consen 110 LILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS------------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF 177 (303)
T ss_pred HhcCccccHHHHHHHHHHHhhHheeeeccccccc------------ccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776643211 1111122233499999999999999999998866
Q ss_pred c-CCCCchhHHHHHHHHHHHhhhHHhHh--cCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012 167 N-ASDQPLVTVFSFGILASPAAGICLFF--FEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV 237 (288)
Q Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~ 237 (288)
+ .+.++...+++....+.+........ .++... ..+..+..++...+.+.++..+.+...++.++...+.+
T Consensus 178 ~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v 257 (303)
T PF08449_consen 178 KKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIV 257 (303)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 4 44566788888888888888776665 333222 24556777778888888888888999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012 238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283 (288)
Q Consensus 238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 283 (288)
..+.-+++.+++++++++++++.+|+|..+++.|..+..+.++||+
T Consensus 258 ~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 258 TTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999888877764
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.83 E-value=1.6e-19 Score=152.61 Aligned_cols=228 Identities=17% Similarity=0.196 Sum_probs=187.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccc
Q 023012 39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~ 118 (288)
+..+..+..+..-+.++..+..|+.+++++..+++.+++-+|+..++.++..||+++.|.+++++++.|++++...+.+.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 33445666677778999999999999999999999999999999999999999999999999999999999998776432
Q ss_pred cccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHh---H---
Q 023012 119 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL---F--- 192 (288)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 192 (288)
.++........|.++++++++.||.|.++.|+...+++....+..+++..|..-.+... +
T Consensus 237 --------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 237 --------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred --------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11234456789999999999999999999998655443344444444555543332222 1
Q ss_pred --hcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHH
Q 023012 193 --FFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLIL 269 (288)
Q Consensus 193 --~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~ 269 (288)
..+.+..|+......++..++++. ++-.+|.+|+-..++..+.+-+.++++.+++.+.++-+..+++.+++|.+.|.
T Consensus 303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~If 382 (416)
T KOG2765|consen 303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIF 382 (416)
T ss_pred HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 124566788888888888887755 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023012 270 VSVFYTMYIGP 280 (288)
Q Consensus 270 ~g~~~~~~~~~ 280 (288)
+|-++.+...+
T Consensus 383 v~Fv~vn~~~~ 393 (416)
T KOG2765|consen 383 VGFVIVNISSE 393 (416)
T ss_pred HHHhheecccc
Confidence 99999887644
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.70 E-value=1.3e-16 Score=136.00 Aligned_cols=257 Identities=14% Similarity=0.079 Sum_probs=202.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQP--IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA 84 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll 84 (288)
-|..++..+...+.+.....-..+-.+ ...++..++.++..++...++..+-..|+.+.+++-+..+..++|++++++
T Consensus 47 ~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~ 126 (316)
T KOG1441|consen 47 FPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLL 126 (316)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHH
Confidence 356666776666666555443333222 222445677888999999999999999999999999999999999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023012 85 ARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA 164 (288)
Q Consensus 85 ~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~ 164 (288)
++++.+|+.+.+.+..+.....|+.+....+. ..++.|.+.+.++.+..+..+++.|+
T Consensus 127 ~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~fn~~G~i~a~~s~~~~al~~I~~~~ 184 (316)
T KOG1441|consen 127 SVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------SFNLFGFISAMISNLAFALRNILSKK 184 (316)
T ss_pred HHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877553 35889999999999999999999999
Q ss_pred ccc---CCCCchhHHHHHHHHHHHhhh-HHhHhcCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012 165 GAN---ASDQPLVTVFSFGILASPAAG-ICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKV 234 (288)
Q Consensus 165 ~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~ 234 (288)
..+ .+.++.....+..-.+...++ +.....++... +.......+....++...-+...+..+.+.+|...
T Consensus 185 ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~ 264 (316)
T KOG1441|consen 185 LLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTY 264 (316)
T ss_pred hhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhh
Confidence 773 345677777776666666665 43333222111 11112333334446667778888999999999999
Q ss_pred eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012 235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285 (288)
Q Consensus 235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 285 (288)
++.+...-.+.++.++++++|+.|+.+..|+.+.++|+.++.+.+.+++++
T Consensus 265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999999999988776654
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.69 E-value=4e-16 Score=112.57 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccC---chHHHHHHHHHHHHHHHHHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEV 220 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~ 220 (288)
...+++++++++++..+..|-..++.| |...+.........++.......+++..+ +++.|..+...|+.+..++.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 357889999999999999999776544 65666677777777777777888888877 89999999999988999999
Q ss_pred HHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 221 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 221 ~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
+|++|+|..+++++.++..+.|+++.+++++++||++|..+++|+.+|++|.+++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999987654
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.65 E-value=1.4e-14 Score=120.95 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccc
Q 023012 39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~ 118 (288)
+......+.+++..+.+.+.+.++++++++.-.++..+..+++++++++++|+|++++||.++.+.+.|+.++-..+...
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999986665432
Q ss_pred cccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-hhHHHHHHHHHHHhhhHHhHhcCcc
Q 023012 119 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP-LVTVFSFGILASPAAGICLFFFEEF 197 (288)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (288)
... +++++.+++....+...|.++.+.++++.++..++..+..|+.+.+ ..........+.++.+...... ++
T Consensus 95 ~~~-----~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~ 168 (244)
T PF04142_consen 95 SDN-----SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DG 168 (244)
T ss_pred ccc-----ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence 110 0001111111234568999999999999999999998877755433 3334444566666655543322 22
Q ss_pred ccC---------chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHH
Q 023012 198 VLP---------SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 268 (288)
Q Consensus 198 ~~~---------~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 268 (288)
..+ +...|..++ ....+-++....+|+.+.-.=+.......+++.+.++++++.+++....+|+.++
T Consensus 169 ~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 169 SAISESGFFHGYSWWVWIVIF----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccccCCchhhcchHHHHHHH----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 211 222222222 2335556667778999999889999999999999999999999999999998653
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=6.4e-15 Score=106.36 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=100.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
.+++||..-++.|..+...++..+....++.... .++.+.++.+.|+.+..++.+||+|++..+++.+..+..++|+
T Consensus 26 l~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svv 105 (140)
T COG2510 26 LEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVV 105 (140)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHH
Confidence 5789999999999999998888887777765444 5666788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 80 MASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
++++++++++|||+|.++|+|+.+..+|++++.
T Consensus 106 l~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 106 LAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999998875
No 24
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8e-13 Score=109.50 Aligned_cols=259 Identities=11% Similarity=0.072 Sum_probs=209.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 86 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~ 86 (288)
++..+.+.+-+.+.+....++..++.+. ..++.++.....++...++..|-+.|++|++-..-.+-.+.--+-+++++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~-~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~ 128 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKEL-SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT 128 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccC-CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence 5667778888888888777766655543 333445567778889999999999999999999999999988888999999
Q ss_pred HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012 87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 166 (288)
Q Consensus 87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~ 166 (288)
++.|+|.+.++.+...+.-.|+.+....+..+ ...+.....++.|+.+....-..-++.+..+.++.
T Consensus 129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHhcCccCcHHHHHHHHHHhheeeEEEecCCC-------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 99999999999999999999997765443211 01122235688999999999998888888887755
Q ss_pred c-CCCCchhHHHHHHHHHHHhhhHHhHhcCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh
Q 023012 167 N-ASDQPLVTVFSFGILASPAAGICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY 239 (288)
Q Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~ 239 (288)
+ -+.++...+++..+.+.+......+..+++.. ..++.+.-++.+..++.+++.+.+.-+++-++.+...++.
T Consensus 196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 5 34677888888888888888776554433322 2577888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 240 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 240 ~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
+.-++++.++.+.++.+.+..||.|..++..|+.+-...+
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k 315 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK 315 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence 9999999999999999999999999999999988765443
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.6e-13 Score=107.50 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012 42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 121 (288)
+.-...++......+.-..|+|++|-....+-.+.-|+-+++++.++.+++-+|++...+.++++|+++.+..+.+-.
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~-- 163 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG-- 163 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC--
Confidence 445566666777778888999999999999999999999999999999999999999999999999999877643221
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc-
Q 023012 122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEE-FV- 198 (288)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 198 (288)
+........|.++.++|--.-+.....+.+..+ .......++++..+-+.+.+....++.++ |.
T Consensus 164 -------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF 230 (337)
T KOG1580|consen 164 -------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF 230 (337)
T ss_pred -------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH
Confidence 112345678999999998888777777766433 22344566777777776666555554432 22
Q ss_pred ----cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 199 ----LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 199 ----~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
...+..|.-+..+++.+.+++++.+.-...-+|..-+.+..+.-.|+++.++++++.+++.+||+|..++..+...
T Consensus 231 ~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 231 FYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 3357788888899999999999999999999999999999999999999999999999999999999999998665
Q ss_pred HHHh
Q 023012 275 TMYI 278 (288)
Q Consensus 275 ~~~~ 278 (288)
=...
T Consensus 311 D~~~ 314 (337)
T KOG1580|consen 311 DVVD 314 (337)
T ss_pred Hhhc
Confidence 4433
No 26
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.2e-12 Score=105.94 Aligned_cols=249 Identities=14% Similarity=0.100 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHh--CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcc
Q 023012 14 MRCTVTLILSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILRE 91 (288)
Q Consensus 14 ~R~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e 91 (288)
.+.+...+.+...-+.+ +.+... ++..+.+....+........--++++++++...+++-+..|+++++...+++|.
T Consensus 49 ~Q~l~s~~~v~~lk~~~lv~~~~l~-~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~ 127 (314)
T KOG1444|consen 49 LQSLASVLVVLVLKRLGLVNFRPLD-LRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGK 127 (314)
T ss_pred HHHHHHHHHHHHHHHhceeecCCcC-hHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCc
Confidence 56655554444322222 122222 333455666677767777777889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCC
Q 023012 92 KLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASD 170 (288)
Q Consensus 92 ~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~ 170 (288)
|++.+.|.++....+|......++.. .+..|+.+++...++-+.+.+..|+..+ .+-
T Consensus 128 ~~~~~v~~Sv~~m~~~s~~~~~~d~s----------------------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l 185 (314)
T KOG1444|consen 128 RPSNKVWASVFAMIIGSVAAAFTDLS----------------------FNLRGYSWALANCLTTAAFVVYVKKSVDSANL 185 (314)
T ss_pred CchhhHHHHHHHHHHHHHhhccccce----------------------ecchhHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999887766643 2345999999999999999999998554 333
Q ss_pred CchhHHHHHHHHHHHhhhHHhHhcCccc--------cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012 171 QPLVTVFSFGILASPAAGICLFFFEEFV--------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242 (288)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~p 242 (288)
+....+++..+.+.+.........++++ .++...+..+...+++++.-..+-.++.+..++...+++...+.
T Consensus 186 ~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~ 265 (314)
T KOG1444|consen 186 NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNK 265 (314)
T ss_pred cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhh
Confidence 4566788888989888888877777654 22355677888888999977788889999999999999998889
Q ss_pred HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285 (288)
Q Consensus 243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 285 (288)
..+.+...++.+++.++...+|..+-++|.+++.+.+.+|++.
T Consensus 266 l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 266 LLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 9999999999999999999999999999999998876555443
No 27
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=1.3e-11 Score=102.83 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHH----HHHHHHHhhhheec
Q 023012 39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIG----GLALSFFGVLFIFR 113 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~----g~~l~~~Gv~l~~~ 113 (288)
+.+..-++.|++-.+++...+.++++.+.+.+.++.. +.-+.+.+++.++++|.-+..+++ ++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4556678889999999999999999999999999976 555558899999999998877665 78888889988776
Q ss_pred ccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHh
Q 023012 114 RILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF 193 (288)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (288)
.+.++.. ..+..+...|+...+++.+.|..|....|.. +.++....+-+ ..+.++...+...
T Consensus 123 ~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~ 184 (269)
T PF06800_consen 123 QDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNL 184 (269)
T ss_pred ccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhh
Confidence 6533211 1123456679999999999999999998873 23455555544 4444444433332
Q ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchh----hHhHHHHHH
Q 023012 194 FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFG----RLVGCVLIL 269 (288)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~----~~~G~~li~ 269 (288)
.. .+....+....-...|++-.++..++..+.++.+.+..=.++.+.++++.+.+.+++||+=+.+ .++|.++++
T Consensus 185 ~~-~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv 263 (269)
T PF06800_consen 185 FS-KKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIV 263 (269)
T ss_pred cc-cccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHH
Confidence 22 2222222223334667777789999999999999999999999999999999999999987755 467888888
Q ss_pred HHHHH
Q 023012 270 VSVFY 274 (288)
Q Consensus 270 ~g~~~ 274 (288)
.|.++
T Consensus 264 ~G~il 268 (269)
T PF06800_consen 264 IGAIL 268 (269)
T ss_pred Hhhhc
Confidence 87654
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.5e-11 Score=102.49 Aligned_cols=225 Identities=15% Similarity=0.151 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012 42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 121 (288)
..+.+.++...+.+.++|.++.+++++...+.+.+.-+.|+++.++++++|++++||.++++.+.|+.++-.+.....+
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~- 171 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG- 171 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC-
Confidence 3466777888899999999999999999999999999999999999999999999999999999999998633322111
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHHHHhhhHHhHhcCcccc-
Q 023012 122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLV-TVFSFGILASPAAGICLFFFEEFVL- 199 (288)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (288)
.++.......+.|....+.++..-++..++..+..|+.+.+.. -......+|.++.+......+....
T Consensus 172 ----------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~ 241 (345)
T KOG2234|consen 172 ----------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN 241 (345)
T ss_pred ----------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 1112234567899999999999999999999998875543433 3333455555555544433321111
Q ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHH
Q 023012 200 -------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV 272 (288)
Q Consensus 200 -------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~ 272 (288)
.+...|..++..++ +-.+...-+|+.+--.=+....+..+++.+.++.+++-+||....+|..+++.++
T Consensus 242 ~~gff~G~s~~vw~vVl~~a~----gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si 317 (345)
T KOG2234|consen 242 EYGFFYGYSSIVWLVVLLNAV----GGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI 317 (345)
T ss_pred cCCccccccHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 13444444444444 3344445567777777777777899999999999999999999999999999999
Q ss_pred HHHHHhCCc
Q 023012 273 FYTMYIGPE 281 (288)
Q Consensus 273 ~~~~~~~~~ 281 (288)
.++...+.+
T Consensus 318 ~lY~~~P~~ 326 (345)
T KOG2234|consen 318 FLYSLYPAR 326 (345)
T ss_pred HHhhcCCcc
Confidence 988855543
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.45 E-value=3.8e-13 Score=100.94 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--ccCchHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 023012 153 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VLPSFYSFLLMLVLSILA-FFAEVLLARGLQLE 229 (288)
Q Consensus 153 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~-~~~~~~~~~al~~~ 229 (288)
++||.+.+..|+..++ .++.....++...+.+ ........+.. ..++..++......++++ .+++.++++++++.
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4688999999997764 6788888888888886 55544444433 456788888888899885 69999999999999
Q ss_pred CCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 230 KTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 230 ~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
++++++.+.+++|+++.+++++++||+++..+++|+++++.|+.+..
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.40 E-value=2.6e-12 Score=96.34 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=87.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHh-C-C-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 3 VQSIPLFETVFMRCTVTLILSYLWLRRS-G-Q-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
.++.||.+..++|+..+.+ +.+..... + + +..++++.......+.+....+..++++++++++++.++++.++.|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv 92 (126)
T PF00892_consen 14 LKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPV 92 (126)
T ss_pred hccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4569999999999999987 44433322 2 2 23333343444445455568999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 80 MASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
++.+++++++|||+++++++|+.+++.|+.++.
T Consensus 93 ~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 93 FAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998763
No 31
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.39 E-value=4.1e-12 Score=93.77 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC----CCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH
Q 023012 13 FMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 87 (288)
Q Consensus 13 ~~R~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~ 87 (288)
.+|+..+.+++..+...+++.. ..+++.+......++.. ..++.++++|.++.| +.+.++.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5799999988877766544321 11122233455555555 488999999999999 58899999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHhhhheeccccc
Q 023012 88 ILREKLKIAEIGGLALSFFGVLFIFRRILT 117 (288)
Q Consensus 88 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~ 117 (288)
++|||+++++++++.++++|++++..++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999887743
No 32
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.34 E-value=1.5e-10 Score=96.21 Aligned_cols=246 Identities=15% Similarity=0.106 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH
Q 023012 8 LFETVFMRCTVTLILSYLWLRRSGQ------PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA 81 (288)
Q Consensus 8 ~~~~~~~R~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~ 81 (288)
|..++....++-+++.....+.++. ....+++..+.+...++.....-.+-..++++++.+..++..+..++|+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI 124 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI 124 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence 4555556665555554444332221 1233445556677888888888888899999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023012 82 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 161 (288)
Q Consensus 82 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~ 161 (288)
.+++.++-=||.++.-..-+.+..+|+.+....+.+ -+..|..+...++++-++....
T Consensus 125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq----------------------f~i~Gf~lv~~aS~~sGlRW~~ 182 (349)
T KOG1443|consen 125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ----------------------FNIEGFFLVLAASLLSGLRWAF 182 (349)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc----------------------eeehhHHHHHHHHHhhhhhHHH
Confidence 999988777999999999999999999999877643 3557777777777776666555
Q ss_pred HHhcccC----CCCchhHHHHHHHHHHHhhhHHhHhcCcccc---------Cch----HHHHHHHHHHHHHHHHHHHHHH
Q 023012 162 IKAGANA----SDQPLVTVFSFGILASPAAGICLFFFEEFVL---------PSF----YSFLLMLVLSILAFFAEVLLAR 224 (288)
Q Consensus 162 ~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~l~~~gi~~~~~~~~~~~ 224 (288)
.+++.++ ..+|..+.....-......++..+..++... .+. .....+...|..+++--..-+.
T Consensus 183 tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEfl 262 (349)
T KOG1443|consen 183 TQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFL 262 (349)
T ss_pred HHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554432 3456666666555555555555554443221 122 1223344444555544455556
Q ss_pred hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHH
Q 023012 225 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 275 (288)
Q Consensus 225 al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~ 275 (288)
-+.+++....+...-..-+.+.+++....+|.++...|.|..+...|+.+.
T Consensus 263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999999887
No 33
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.5e-11 Score=97.49 Aligned_cols=223 Identities=12% Similarity=0.095 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCC
Q 023012 45 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGG 124 (288)
Q Consensus 45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~ 124 (288)
....+......+.--.++||++....++..++..+.++.....++|.|++..+..+..+.+..-..-.+.|.+...
T Consensus 72 fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~---- 147 (309)
T COG5070 72 FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA---- 147 (309)
T ss_pred cCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH----
Confidence 3344444444444557899999999999999999999999999999999999999999988888777777643211
Q ss_pred CCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCccccC---
Q 023012 125 LVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFVLP--- 200 (288)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (288)
.....-..|++++...++.-+.+....|+..+ .+-....++++..+.+.++.....+..++|.+.
T Consensus 148 -----------~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~a 216 (309)
T COG5070 148 -----------FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLA 216 (309)
T ss_pred -----------HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhh
Confidence 00112346889999999999999988887554 233446689999999999999999988888764
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 201 ---SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 201 ---~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
+.....+++..|+.+..-..+-.|.++..+.+..+++..++-.-..+.+.++++|+.+...+....+-..++.++..
T Consensus 217 nnl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 217 NNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred cCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34556788888998887777889999999999999999999999999999999999999999999998888888776
Q ss_pred hCCcc
Q 023012 278 IGPEK 282 (288)
Q Consensus 278 ~~~~~ 282 (288)
.+.+|
T Consensus 297 aks~k 301 (309)
T COG5070 297 AKSKK 301 (309)
T ss_pred HHHHH
Confidence 65443
No 34
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=1.9e-13 Score=110.30 Aligned_cols=254 Identities=10% Similarity=0.091 Sum_probs=190.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 86 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~ 86 (288)
.|..-.|..+..-+++-.++...|++. ...+ |+.-++.++.-.-++.+...|.||++...++.+..-....+.+++|
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~--~~~~-~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw 123 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRRKY--IKAK-WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSW 123 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhhHH--HHHH-HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHH
Confidence 455667777776666666655544421 1122 2335666677777888889999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012 87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 166 (288)
Q Consensus 87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~ 166 (288)
+++|.|-++.|+.|+++|+.|+.++...|...+. ...+.+...|+.+.++++-+||+.++....+.
T Consensus 124 ~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd--------------~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 124 FFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD--------------RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHHHHHHhhheeeeEEeEecceEEEEEeeecccc--------------ccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 9999999999999999999999999888765421 12245667899999999999999999999987
Q ss_pred cCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCc-hHHHHHHHH--HHHHHHHHHHHHHHhhcccCCcceeehhhhHHH
Q 023012 167 NASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS-FYSFLLMLV--LSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243 (288)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv 243 (288)
| +.+....+....++|.+++.+= +..+..+..+ -++|....+ ..+..++-|.+.-.-+|..+++..+.-..+.-.
T Consensus 190 k-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDm 267 (336)
T KOG2766|consen 190 K-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDM 267 (336)
T ss_pred h-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHH
Confidence 6 4556677777788888887765 3222222211 112322222 334456778888888899999999998899999
Q ss_pred HHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 281 (288)
Q Consensus 244 ~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 281 (288)
.+.++ -.||-..+|...+....+..|.+++..+++.
T Consensus 268 wsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~ 303 (336)
T KOG2766|consen 268 WSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKD 303 (336)
T ss_pred HHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccC
Confidence 99998 5677779999999999999998887666543
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.27 E-value=1.8e-10 Score=99.00 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc---CccccCchHHHHHHHHHHHHHHHHHHH
Q 023012 145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF---EEFVLPSFYSFLLMLVLSILAFFAEVL 221 (288)
Q Consensus 145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gi~~~~~~~~ 221 (288)
.++.+.+++++|..++..|+..++ +++. ..+....+.+...+..... .++..++...|..+...++.....+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 467799999999999999986654 3332 3444444444444443322 234444455555566556666799999
Q ss_pred HHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 222 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+++++++.+++.++++.+++|+++.+++++++||+++..+++|..+++.|+.+....
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999887654
No 36
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.21 E-value=2.9e-10 Score=97.83 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccC
Q 023012 43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~ 122 (288)
.++.+.+...++..+-+.|+...|.+.++.+....-++..+++.+++|||++++++.|..+++.|..++...+.++.+
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~-- 129 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP-- 129 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC--
Confidence 344555555788889999999999999999999999999999999999999999999999999999876544322111
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHH-------hhhHHhH-hc
Q 023012 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASP-------AAGICLF-FF 194 (288)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~ 194 (288)
..+.+|-. +...+ .....+...... +...+.....+|..+++ ...........+.. +...+.. ..
T Consensus 130 --~~t~~~l~-~~~~~-~~fl~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~ 202 (300)
T PF05653_consen 130 --IHTLDELI-ALLSQ-PGFLVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILIKLTFS 202 (300)
T ss_pred --cCCHHHHH-HHhcC-cceehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHHHHHhc
Confidence 00000000 00001 111122212211 12222222222212111 11010000111110 0000001 11
Q ss_pred CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccC--Cch----hhHhHHHH
Q 023012 195 EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIA--PSF----GRLVGCVL 267 (288)
Q Consensus 195 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~--~~~----~~~~G~~l 267 (288)
++....++..|..++...........+.++|+++-+++.+.++.+ .-...+.+-+.++++|- .+. ....|+..
T Consensus 203 g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ 282 (300)
T PF05653_consen 203 GDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLI 282 (300)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 111122455555555554445588888999999999999999888 44778888888899984 444 34667778
Q ss_pred HHHHHHHHHHhCCcc
Q 023012 268 ILVSVFYTMYIGPEK 282 (288)
Q Consensus 268 i~~g~~~~~~~~~~~ 282 (288)
++.|+.++..+++++
T Consensus 283 ii~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 283 IIIGVFLLSSSKDKE 297 (300)
T ss_pred HHHhhheeeccCchh
Confidence 888887765554443
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.18 E-value=2e-10 Score=89.58 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCC
Q 023012 48 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVK 127 (288)
Q Consensus 48 ~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 127 (288)
.++-...++.|..|++.++++.++.+...+-.|+.+++++.+|+|+...++++..+++.|+.++.+.|-.
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~---------- 129 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE---------- 129 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch----------
Confidence 3444577889999999999999999999999999999999999999999999999999999999876522
Q ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-----HHHHHHHHHHHhhhHHhHhc--CccccC
Q 023012 128 PGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLV-----TVFSFGILASPAAGICLFFF--EEFVLP 200 (288)
Q Consensus 128 ~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~ 200 (288)
-..++.|+.+++.|+...|+|.+..|+.....+-... ...++.+.-.-+...+...+ +++...
T Consensus 130 ----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF 199 (290)
T KOG4314|consen 130 ----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF 199 (290)
T ss_pred ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH
Confidence 1357899999999999999999999986542211111 11111111110111111111 233333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 201 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 201 ~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
...-|..+...+.++..-.++.+.+.....|-..+.=+.....--..++.++-+-..+.....|.++|..|-++....+.
T Consensus 200 A~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 200 AAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred hhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 44457777777766666667777888888888888888888888888997766667788999999999999877666554
Q ss_pred cc
Q 023012 281 EK 282 (288)
Q Consensus 281 ~~ 282 (288)
|.
T Consensus 280 ~~ 281 (290)
T KOG4314|consen 280 KD 281 (290)
T ss_pred hh
Confidence 43
No 38
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=9.3e-11 Score=95.89 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=188.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCC-C---CCC----CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQ-P---IFG----PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 78 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P 78 (288)
.|..+++...+....+...+.+..++ + ..+ +-+..+...-..+.......+--+++++++++-..+--++..
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 46777888888877776665443221 1 111 111122233333333344445567888999988888888999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012 79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 158 (288)
Q Consensus 79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~ 158 (288)
+|++++++.++|+|-+.....+..+.+.|..+=.+.+. ..+.-++.|.++++.+.++-|+.
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~-------------------~~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG-------------------STGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheecccccc-------------------ccCccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999988888887777755433321 12456889999999999999999
Q ss_pred HHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCcc-------ccCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023012 159 YCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEK 230 (288)
Q Consensus 159 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~ 230 (288)
.+..|+... ..+.-.....+..+.+.++.++.....+++ +.++.+.|..+...|++++.-...-.+-+|..+
T Consensus 201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TS 280 (347)
T KOG1442|consen 201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTS 280 (347)
T ss_pred HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecc
Confidence 999998443 345566778888888888888877655432 335778899999999999844444556678899
Q ss_pred CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
|.+-+.-..-......+++..+++|.-+...|-+-++++.|...+.+.+
T Consensus 281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 9999888889999999999999999999999999999999988877643
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.17 E-value=9e-10 Score=95.29 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-----CchHHHHHHHHHHHH
Q 023012 140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSIL 214 (288)
Q Consensus 140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~ 214 (288)
+...|.++.++++++|+...+..|.. . +.++....+++...+.++..+.....++... .+..++.... .+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HHHH
Confidence 45689999999999999999999874 3 4678889999988887766554433322111 1233333333 4444
Q ss_pred -HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 215 -AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 215 -~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
....+.++++++++.+++.++.+.++.|++..+++++++||+++..+++|..+.+.|+.+...
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999999987654
No 40
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.11 E-value=1.2e-09 Score=85.11 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC------CCCchhHHHHHHHHHHHhhhHHhHhcCccccC-------------chHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANA------SDQPLVTVFSFGILASPAAGICLFFFEEFVLP-------------SFYS 204 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 204 (288)
|.++++.+.++.+++.++.|+..++ +.++.....+....+.+...+.....++.... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5788999999999999999986654 56677888888888888888777665543310 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 205 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 205 ~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
+..++..|+.+..-+...+..+++.+|...+....+..+...+.++++++|++|..+++|..+.+.|++++.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 667777788888999999999999999999999999999999999999999999999999999999988765
No 41
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.08 E-value=2.7e-09 Score=90.38 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-------ccCchHH-HHHHHHHHHH
Q 023012 143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYS-FLLMLVLSIL 214 (288)
Q Consensus 143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~l~~~gi~ 214 (288)
.|..+.++++++|+...+..|.. . +.++....+++.+.+.++..+.....++. ...+... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 37889999999999999999984 3 47788999999998877665544332221 1122222 4456666777
Q ss_pred HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
....+.+++.++++.+++.++.+.++.|+++.+++++++||+++..+++|..+.++|+.+...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999999999999999999999999999999999887643
No 42
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.03 E-value=1.8e-08 Score=83.00 Aligned_cols=221 Identities=9% Similarity=0.068 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012 42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 121 (288)
..+...+++-..+..+++.++.+++++.-..+-...-+|+.+++.-+++++++.+||+|+.....|+..+...+.....
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~- 165 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT- 165 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-
Confidence 4556688999999999999999999999999999999999999999999999999999999999999998776644311
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCchhHHHHHHHHHHHhhhHHhHhcC-----
Q 023012 122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA-GANASDQPLVTVFSFGILASPAAGICLFFFE----- 195 (288)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 195 (288)
+.-.+......|+++.+++-+.-|+..++-.| +.+.+.+|.....+..+++.+....+.....
T Consensus 166 -----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~ 234 (372)
T KOG3912|consen 166 -----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG 234 (372)
T ss_pred -----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence 00111245678999999999999999998866 4445678888999999998665544443211
Q ss_pred -cccc-C--chHHHH------------HHHHHHHHHHHHHHHH----HHhhcccCCcceeehhhhHHHHHHHHHHHhhcc
Q 023012 196 -EFVL-P--SFYSFL------------LMLVLSILAFFAEVLL----ARGLQLEKTSKVANVQYIEVALTQLWGMGLSRI 255 (288)
Q Consensus 196 -~~~~-~--~~~~~~------------~l~~~gi~~~~~~~~~----~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e 255 (288)
.+.. | ...+|. .+...|.. .+..++ ..-.|..++++=.++..+...+-=+++.....|
T Consensus 235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~--vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E 312 (372)
T KOG3912|consen 235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFT--VSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE 312 (372)
T ss_pred CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhh--hheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 1111 1 123332 22222222 222222 223456677777788888888888888888999
Q ss_pred CCchhhHhHHHHHHHHHHHHH
Q 023012 256 APSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 256 ~~~~~~~~G~~li~~g~~~~~ 276 (288)
.++..|+.|..+.+.|+.+++
T Consensus 313 ~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 313 YFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
No 43
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.01 E-value=3.4e-09 Score=87.82 Aligned_cols=208 Identities=10% Similarity=0.098 Sum_probs=126.8
Q ss_pred ccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc----CCC-CCCCcccccccccchh
Q 023012 66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV----SGG-LVKPGEAISLNVRGSD 140 (288)
Q Consensus 66 ~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 140 (288)
+........+..|+++++......+||.+..|+++.++...|+..-...+.+.... .+. ..+.++..++......
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~ 82 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN 82 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence 34445566778888888888888888888888888888888877543332211000 000 0000001101112235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-HHHHHHHHHHhhhHHhHhcCccc--cC-c-hHH-HHHHHHHHHH
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVT-VFSFGILASPAAGICLFFFEEFV--LP-S-FYS-FLLMLVLSIL 214 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~-~~~l~~~gi~ 214 (288)
.+.|..+.+.+..+-+...++.++..|+++..... .......+.+.... .....+.. .. + ... -.......+.
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcccCCchHHHHHHHH
Confidence 67888888888888888888888865543322211 11112222222111 11111111 00 0 000 1112222344
Q ss_pred HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
+..+..+..+.+|+.++...+....++++++.+++++++||+++..++.|..+++.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 557777899999999999999999999999999999999999999999999999988653
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.97 E-value=1.3e-08 Score=76.24 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHH
Q 023012 143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVL 221 (288)
Q Consensus 143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~ 221 (288)
.|+++.+.+.++-+.+.++.|+..++.. ....... .. .... .. .++ ...++.|+.+. +++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~~----~~~~--~~------~~p---~~~i~lgl~~~~la~~~ 64 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-FI----AALL--AF------GLA---LRAVLLGLAGYALSMLC 64 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-HH----HHHH--HH------hcc---HHHHHHHHHHHHHHHHH
Confidence 4778899999999999999998665322 2111111 00 0000 00 111 11355666654 99999
Q ss_pred HHHhhcccCCcceeehhhhHHHHHHHHHHH--hhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012 222 LARGLQLEKTSKVANVQYIEVALTQLWGMG--LSRIAPSFGRLVGCVLILVSVFYTMYIGPE 281 (288)
Q Consensus 222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~--~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 281 (288)
|..++++.|++++.++....++...+.++. ++||++|+.+++|..+|++|+++..+.+++
T Consensus 65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999998888888875 899999999999999999999988765444
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.95 E-value=8.1e-09 Score=87.56 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcc
Q 023012 155 GGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSK 233 (288)
Q Consensus 155 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~ 233 (288)
|+...+..|...++..++....+++...+.+...+.... . ++.+++......|.++. +.+.+++.++++.+++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR-R----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-c----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 455667778866556778888888888877766554332 2 45667777777777764 89999999999999999
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
++.+..++|+++.+++++++||+++..+++|..+.+.|+.+....
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 999999999999999999999999999999999999999887644
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.94 E-value=2.1e-08 Score=88.61 Aligned_cols=138 Identities=15% Similarity=0.083 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc--cCchHHHHHHHHHHHHHHH
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FV--LPSFYSFLLMLVLSILAFF 217 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~gi~~~~ 217 (288)
...-++.++..=++|+...++.|...+...++.....++...+.++..++....+. .. ..+..+|..+...|+++..
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 55667788888899999999999988888889889999988888777766554322 22 2246677888888887765
Q ss_pred HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHh------hccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL------SRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~------~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
.+.+++.++++.+++.++.+.++.|+++.++++++ ++|+++..+++|.++-++|+.++...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 66789999999999999999999999999999999 69999999999999999999876653
No 47
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.89 E-value=5.2e-08 Score=80.14 Aligned_cols=231 Identities=9% Similarity=0.038 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012 43 LLVLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 121 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 121 (288)
.........+..+.+-.+|+++ +|...=.+.-+..++-++++++++.|+|-+.+|..++++..+|+++....+..+...
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 3344444456677777888886 777777778889999999999999999999999999999999998876554333221
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHh-------
Q 023012 122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFF------- 193 (288)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------- 193 (288)
..+.+|. +++......-..|+.+...+-+.-|.-.+++.+.-+ ...++...+++.-..+.+..+...-.
T Consensus 146 ~~~~l~~---~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~ 222 (330)
T KOG1583|consen 146 KLSGLDS---GSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRL 222 (330)
T ss_pred hhccccc---CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHH
Confidence 0001111 111112234456777766666666655555443222 23446667777777776665443210
Q ss_pred ---cCccccC-----chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHH
Q 023012 194 ---FEEFVLP-----SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGC 265 (288)
Q Consensus 194 ---~~~~~~~-----~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~ 265 (288)
.+.+..| -|..|.+++...+.-....--.+.--.+.++.+++++..+.-.++.+++++.++.++|++.|+|.
T Consensus 223 ~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa 302 (330)
T KOG1583|consen 223 AFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGA 302 (330)
T ss_pred HhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHH
Confidence 1111111 35667777666655444444445555678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023012 266 VLILVSVFYTM 276 (288)
Q Consensus 266 ~li~~g~~~~~ 276 (288)
.++..|.++..
T Consensus 303 ~lVF~Gt~~fa 313 (330)
T KOG1583|consen 303 ALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.80 E-value=1.9e-07 Score=68.33 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 49 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
.+...+..++.+++++.|.+.+..+.++.|+++.+++++++|||++.+|++|+.+++.|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5556788899999999999999999999999999999999999999999999999999998874
No 49
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.77 E-value=5.5e-08 Score=71.65 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 202 FYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 202 ~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
.+.+.+....|+.+. .++.++..+.++.+ +.+..+..++|+++.+++++++||+++..++.|..++++|+.++.+.+.
T Consensus 31 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 31 RKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 355667777787776 99999999999999 5888999999999999999999999999999999999999999888765
Q ss_pred cc
Q 023012 281 EK 282 (288)
Q Consensus 281 ~~ 282 (288)
+.
T Consensus 110 ~~ 111 (113)
T PF13536_consen 110 TG 111 (113)
T ss_pred cc
Confidence 43
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.77 E-value=2.1e-07 Score=80.35 Aligned_cols=132 Identities=16% Similarity=0.056 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLL 222 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~ 222 (288)
=.+..++-.+.|+...+..|...+ +.+|.....++...+.++..+.....+ ...++.+++......|.+.. ..+.++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRG-HPLPTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999998654 677888889888888777666554333 22345667877777887754 777888
Q ss_pred HHhh-cccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 223 ARGL-QLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 223 ~~al-~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+.+. ++.+++.++.+.+++|+++.+++++ +||+++..+++|.++.++|+.+....
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8888 9999999999999999999999985 79999999999999999998876543
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.77 E-value=5.2e-06 Score=72.32 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHhhh
Q 023012 38 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKL-------KIAEIGGLALSFFGVL 109 (288)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~-------~~~~~~g~~l~~~Gv~ 109 (288)
.+....-.+.|++-.+++..++.++++.+.+.+..+.. +.-+...++..++++|-. ...-.+|+++.++|+.
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 34455677888888899999999999999999998855 788889999999988754 2346779999999999
Q ss_pred heecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH-------HHHHhcccCCCCchhHHHHHHH-
Q 023012 110 FIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-------CLIKAGANASDQPLVTVFSFGI- 181 (288)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~- 181 (288)
+....+...++ ++.+++........|+..++++.+.++.++ ...+...+...++.....-+..
T Consensus 150 l~s~Ag~~k~~---------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~ 220 (345)
T PRK13499 150 IVGRAGQLKER---------KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVV 220 (345)
T ss_pred HHHHhhhhccc---------ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHH
Confidence 98774322211 000000123456789999999999999999 4443311112223222222222
Q ss_pred --HHHHhhhH-HhHh---c-Cccc---cC--c----hHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceee---hh-hhH
Q 023012 182 --LASPAAGI-CLFF---F-EEFV---LP--S----FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN---VQ-YIE 241 (288)
Q Consensus 182 --~~~~~~~~-~~~~---~-~~~~---~~--~----~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~---~~-~~~ 241 (288)
.+..+.-. .... . +++. .. + ..+...-..-|+.-.++..++..+-++.+...... +. .+.
T Consensus 221 ~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ 300 (345)
T PRK13499 221 IMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFY 300 (345)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHH
Confidence 22222221 1110 1 1211 11 1 23444445666677788889998888886654444 44 788
Q ss_pred HHHHHHHHHHhhccCCc------hhhHhHHHHHHHHHHHHHHh
Q 023012 242 VALTQLWGMGLSRIAPS------FGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 242 pv~~~l~~~~~~~e~~~------~~~~~G~~li~~g~~~~~~~ 278 (288)
.+++.+++. ++||.=+ ...++|.++++.|..+....
T Consensus 301 ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 301 VLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 899999998 5999655 66789999999998876554
No 52
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.74 E-value=2.2e-07 Score=77.45 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-----CchHHHHHHHHHHHHH
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSILA 215 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~ 215 (288)
...|+++++.+-+.|+....+.|-+. ..++..+..+..+.+.+....+....+++.. .++..+......++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44799999999999999999999963 5678889999999998888777666655442 3677788888888888
Q ss_pred HHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 216 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 216 ~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
...+..+.+|..+.+...+|.=-+++|++.++++.++++|+++..|++...+..+|+....+.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999876654
No 53
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1e-08 Score=82.84 Aligned_cols=219 Identities=12% Similarity=0.062 Sum_probs=159.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHH----HHHHHHHhhhheecc
Q 023012 40 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIG----GLALSFFGVLFIFRR 114 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~----g~~l~~~Gv~l~~~~ 114 (288)
....-++.|.+-.+++...+.|+++.+++.+..+.. +.-+-+.+++.+.++|..+..|.+ ++++.+.|+.+-...
T Consensus 58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~ 137 (288)
T COG4975 58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ 137 (288)
T ss_pred hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence 344556777777889999999999999999999977 555668899999999999888654 667777787776655
Q ss_pred cccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc
Q 023012 115 ILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF 194 (288)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (288)
+.++ +++++..+.-.|....+.|.++|-.|.+..+...- +...... ....+++......-..
T Consensus 138 ~~~n--------------k~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiL-PqAiGMv~~ali~~~~ 199 (288)
T COG4975 138 DRNN--------------KEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAIL-PQAIGMVIGALILGFF 199 (288)
T ss_pred cccc--------------ccccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhh-HHHHHHHHHHHHHhhc
Confidence 5322 12223445667888889999999999998887532 2333333 3344555544433322
Q ss_pred CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhh----HhHHHHHHH
Q 023012 195 EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGR----LVGCVLILV 270 (288)
Q Consensus 195 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~ 270 (288)
.. .....+.-..-...|+.-..+...+..+-++.+.++.=.++.+..+.+.+-++++++|+=|..+ ++|.++++.
T Consensus 200 ~~-~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivv 278 (288)
T COG4975 200 KM-EKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVV 278 (288)
T ss_pred cc-ccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHH
Confidence 22 2333444445556788888999999999999999888888999999999999999999888776 568888888
Q ss_pred HHHHHHH
Q 023012 271 SVFYTMY 277 (288)
Q Consensus 271 g~~~~~~ 277 (288)
|..++..
T Consensus 279 gai~lg~ 285 (288)
T COG4975 279 GAILLGI 285 (288)
T ss_pred Hhhhhhe
Confidence 8776543
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.67 E-value=3.2e-07 Score=79.63 Aligned_cols=119 Identities=12% Similarity=-0.061 Sum_probs=95.2
Q ss_pred HHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHh-cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceee
Q 023012 158 SYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF-FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN 236 (288)
Q Consensus 158 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~ 236 (288)
.+++.|...++...|....+.+...+.+...+.... ..+....+.++|..++..|++....+.+.+.++++.+++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 345667766544668888888877776554443111 1122234678899999999987788899999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 237 VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 237 ~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
+..++|+++.++++++++|+++..+++|..++++|+.+..
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999997653
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.67 E-value=6.9e-07 Score=79.08 Aligned_cols=136 Identities=12% Similarity=-0.091 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc-Cc-cccC-chHHHHHHHHHHHHHHH
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF-EE-FVLP-SFYSFLLMLVLSILAFF 217 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~l~~~gi~~~~ 217 (288)
++.-..+.+.--.+...++...|...+..+-|......+.+.+.+......... .+ .... ...+|..++..|++...
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344434444333444556667788765433388889999888876654433221 11 1111 23477788899998887
Q ss_pred HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
.+...+.++++.+++.++++..++|+++.++++++++|+++..++.+.+++++|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 77778899999999999999999999999999999999999999999999999998765
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.67 E-value=5e-07 Score=66.10 Aligned_cols=62 Identities=16% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 216 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 216 ~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
..++.++..++++.|.+++..+.++.++.+.+++++++||++|+.+++|..++++|++....
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999999999999999999999999999999887643
No 57
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=2.1e-07 Score=78.44 Aligned_cols=230 Identities=19% Similarity=0.142 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012 42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 121 (288)
+.++.+.+...++..+-|-|+.+.|.+.++.+..++-+..++++..+++||++....+|.+++++|-.+++...-++++
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~- 143 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE- 143 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc-
Confidence 3456667777899999999999999999999999999999999999999999999999999999998777654322211
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhh-----hHHh--Hhc
Q 023012 122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAA-----GICL--FFF 194 (288)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~ 194 (288)
.++.++..+-..++.. +.+...++..++. -....|. .....+.......-.+.+..-- +..+ ...
T Consensus 144 ----i~t~~el~~~~~~~~F-liy~~~iil~~~i--l~~~~~p-~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~ 215 (335)
T KOG2922|consen 144 ----IESVEEVWELATEPGF-LVYVIIIILIVLI--LIFFYAP-RYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTF 215 (335)
T ss_pred ----cccHHHHHHHhcCccH-HHHHHHHHHHHHH--Hheeecc-cccccceeehhhHhhhhcceeeeeHHHHHHHHHHHh
Confidence 1111111111111111 2222222222221 2222232 1122233333322222221100 0000 111
Q ss_pred -CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhh-HHHHHHHHHHHhhccC--Cch----hhHhHHH
Q 023012 195 -EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYI-EVALTQLWGMGLSRIA--PSF----GRLVGCV 266 (288)
Q Consensus 195 -~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~-~pv~~~l~~~~~~~e~--~~~----~~~~G~~ 266 (288)
++.....+..|.+++....+...-....++|++.-+++.++++.+. --.++++-+.++|+|- .+. .+..|+.
T Consensus 216 ~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ 295 (335)
T KOG2922|consen 216 SGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV 295 (335)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence 1222234566777666666666778888999999999999999884 4788888999999983 333 3577888
Q ss_pred HHHHHHHHHHHhCC
Q 023012 267 LILVSVFYTMYIGP 280 (288)
Q Consensus 267 li~~g~~~~~~~~~ 280 (288)
.++.|+.++...++
T Consensus 296 ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 296 TIFLGIFLLHRTKD 309 (335)
T ss_pred HhhheeeEeeeecc
Confidence 88888887754443
No 58
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.65 E-value=4.7e-07 Score=78.24 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=81.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHH
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMAS 82 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ 82 (288)
++.++...... ..++.+++.++..........+.+.+. .+.+..+...+++.++++++++.+++.++++.++.|++..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~ 250 (293)
T PRK10532 172 AEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA 250 (293)
T ss_pred ccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence 34566665444 344555555554443321111222222 2345555567888899999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012 83 IAARIILREKLKIAEIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 83 ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 115 (288)
++++++++|+++..+++|.++.+.|++......
T Consensus 251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998886554
No 59
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.64 E-value=5.1e-07 Score=78.28 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHH
Q 023012 146 LVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLAR 224 (288)
Q Consensus 146 l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~ 224 (288)
++.++++++|+...+..|...+ +.+|....+++...+.+...+... .. . ..+..+...|+... ..+.+++.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~~-~~--~----~~~~~~~~~g~~~~~~~~~~~~~ 78 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFVA-RP--K----VPLNLLLGYGLTISFGQFAFLFC 78 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHhc-CC--C----CchHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998664 577888888887776554433221 11 1 11233444555443 45557778
Q ss_pred hhcc-cCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 225 GLQL-EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 225 al~~-~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+.++ .+++.++.+.+++|+++.+++++++||+++..+++|..+.++|+.+....
T Consensus 79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 8887 57789999999999999999999999999999999999999998877643
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.60 E-value=4.1e-07 Score=78.42 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 223 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 223 (288)
+++++++++++|+...+..|+.. ..++.... ....+.++.........+.....+..+..-+..|+.-..++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999999999954 23333333 233444443333332222111235555556666666679999999
Q ss_pred HhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhh----HhHHHHHHHHHHHHHHhC
Q 023012 224 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~g~~~~~~~~ 279 (288)
.+.++.+.+.+-.+.+ ++++++.+++.+++||+++..+ ++|.++++.|+.+....+
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 9999999999999999 9999999999999999999999 999999999988875554
No 61
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.56 E-value=1.2e-06 Score=75.85 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHH
Q 023012 143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLL 222 (288)
Q Consensus 143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~ 222 (288)
.++++++.++++|+......|...+ ..+|......+...+.++..+... ..+ .....+..+...++.......++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~~~ 78 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTVG-FPR---LRQFPKRYLLAGGLLFVSYEICL 78 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHcc-ccc---cccccHHHHHHHhHHHHHHHHHH
Confidence 3567789999999999999998664 577888888887777666554321 111 11112222222223223444555
Q ss_pred HHhh----cccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 223 ARGL----QLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 223 ~~al----~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+.++ +..++..++.+.++.|+++.++++++++|+++..+++|+++.++|+.++...
T Consensus 79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 5555 4567788899999999999999999999999999999999999999877644
No 62
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1.3e-06 Score=71.87 Aligned_cols=206 Identities=13% Similarity=0.055 Sum_probs=149.0
Q ss_pred HHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccc
Q 023012 57 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV 136 (288)
Q Consensus 57 ~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (288)
+---++.|++-..-.+...+--+=+++.+.++-+.|-+....++..+...|.++....|.+.
T Consensus 122 Lsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------------------ 183 (367)
T KOG1582|consen 122 LSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------------------ 183 (367)
T ss_pred cCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------------------
Confidence 33445666666655555555555567778888899999999999999999999987776443
Q ss_pred cchhhHHHHHHHHHHHHHHHHH-HHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-------CchHHHHHH
Q 023012 137 RGSDHMLAVLVGLFSSITGGIS-YCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-------PSFYSFLLM 208 (288)
Q Consensus 137 ~~~~~~~G~l~~l~~~~~~a~~-~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l 208 (288)
.+..+..|+.+.-.+-++-|.- ++.-|.+.+...+.....++....+.+..+......++... .+.......
T Consensus 184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence 1345667877666666665554 44444433333344455666667777666655554443221 123466777
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 209 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 209 ~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
+..+..+.++......-.+.-++..+..+....-..++++++++|..++|....-|..+++.|+.+-.+.++
T Consensus 264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 777777778888888888888999999999999999999999999999999999999999999988666653
No 63
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.49 E-value=3.2e-06 Score=72.44 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHH-HHH
Q 023012 140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSIL-AFF 217 (288)
Q Consensus 140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~-~~~ 217 (288)
....+....+..++.|+......|+..+...+...........+....... ...+.. ..+....+......+.+ ...
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPL-LLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHH-HHhhcccccccccchHHHHHHHHHHHHH
Confidence 455777888888899999999998865543445555554555555442211 211111 11122223444445544 559
Q ss_pred HHHHHHHhhcccCCcceeehhhhHHHHHHHHHH-HhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGM-GLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~-~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
.+.+++.++++.+++.+..+.++.|++..++++ ++++|+++..++.|..+.+.|+.+....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 999999999999999999999999999999997 66799999999999999999999887766543
No 64
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.43 E-value=2.3e-06 Score=64.18 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH--HhcccchHHHHHHHHHHHHhhhheeccc
Q 023012 43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~--~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 115 (288)
.++++..+...+..++.+++++.|.+.+..+.+..+.++.+.++. +++|+++.+|++|+++.++|++++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 345566666788999999999999999999999999888888885 8999999999999999999999986543
No 65
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.34 E-value=1.3e-05 Score=62.18 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 023012 4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 70 (288)
Q Consensus 4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 70 (288)
++.++.++..+....+.+++.+......... .. ..+....+...++.....+.+.+..++++++...
T Consensus 31 ~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~ 110 (153)
T PF03151_consen 31 KKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTY 110 (153)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHH
Confidence 5789999999999999988877654332211 00 2234456777888888999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 71 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 71 ~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
+++.....+.+.++++++++|+++.+++.|+++++.|+.+-
T Consensus 111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 111 SVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999998764
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.23 E-value=1.4e-05 Score=58.88 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 215 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
-.+++.++..++|+.|.+.+=.+ ..+..+.+.+++++++||++|+.+++|..+|+.|++.++..++++
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 34899999999999999877666 468899999999999999999999999999999999887765444
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.21 E-value=2.9e-05 Score=67.67 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCchhHHHHHHHHHHHhhhHHhHhcCc---cccCchHHHHHHHHHHHH
Q 023012 139 SDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEE---FVLPSFYSFLLMLVLSIL 214 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~ 214 (288)
.+.+.+.+++-.-+++-+..++....+.++ .+.|....+.....-.++.........+ +.......|..-+..+++
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence 456667777777777777777766665443 2224333333333222222222222211 111223455555556888
Q ss_pred HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
-.-+..+...|.++++.+.+.++.....++++++++++++|++++.+++|+.+.++|+.++...+
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 88999999999999999999999999999999999999999999999999999999988876654
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.15 E-value=3.8e-05 Score=64.48 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHH
Q 023012 172 PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGM 250 (288)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~ 250 (288)
|..-.......+.++.....+...+...++...+..-+..|++-.+++..++++.++.+.+++.+++. ++-+.+.++++
T Consensus 12 ~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv 91 (269)
T PF06800_consen 12 PANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGV 91 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHH
Confidence 43444444444455554444444333333568888888999999999999999999999999999996 88888999999
Q ss_pred HhhccCCchhhH----hHHHHHHHHHHHHHHhCCcccc
Q 023012 251 GLSRIAPSFGRL----VGCVLILVSVFYTMYIGPEKEM 284 (288)
Q Consensus 251 ~~~~e~~~~~~~----~G~~li~~g~~~~~~~~~~~~~ 284 (288)
++|||..+..++ .+.++++.|+.+..++++++++
T Consensus 92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred hhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999998876654 4788999999998888776654
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.07 E-value=3.5e-05 Score=56.79 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHH-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheec
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 113 (288)
..+..++...+..++..+++++|.+.+-.+. ...-+.+.+.+.++++|+++..|++|+.+.+.|++.+-.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4566777788999999999999999998886 588899999999999999999999999999999988843
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.05 E-value=2.9e-05 Score=56.45 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 215 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
-.+++.++..++|+.|.+.+=.+ ..+..+.+.+++++++||++|+.+++|..+|+.|++.++..++
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34888888999999999776555 5688999999999999999999999999999999999876554
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.04 E-value=3.6e-05 Score=54.83 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
..++..++...+..+.-.|++++|.+.+-.+.. .--+.+.+.+++++|||++..|++++.+.++|++.+
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 345666777888899999999999999988765 777889999999999999999999999999999877
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.01 E-value=6.9e-07 Score=73.33 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHH
Q 023012 142 MLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVL 221 (288)
Q Consensus 142 ~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 221 (288)
.+|..+.-.+ ..+....+..++..+ .| |....-...+.-++...+..+.+.++.......-.++++=|+.++.+...
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e-~~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvml 113 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLE-ND-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVML 113 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhc-cC-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHH
Confidence 4677777777 667777788887553 34 44444444454444444444444443311222223445567778888889
Q ss_pred HHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 222 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
.++++++.+.+.+.++....|+++.+++|++++|+.|..+.+|..+.+.|++++.+.
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 999999999999999999999999999999999999999999999999999987654
No 73
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.98 E-value=6.8e-05 Score=54.50 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
.....++...+..++..+++++|.+.+-.+.. ..-+.+.+.++++++|++++.|++|+.+.+.|++++-
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34566677788889999999999999988855 7888899999999999999999999999999999983
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.97 E-value=0.00023 Score=51.51 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
......+...+..+.-.++|++|.+.+-.+.. ..-+.+.+.+++++||++++.|++|+.+.+.|++.+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44556666788889999999999999988766 777889999999999999999999999999999876
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.93 E-value=0.00011 Score=52.82 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
......+...+..+...+++.+|.+.+-.+.. .--+.+.+.+++++||++++.|++++.+.+.|++.+
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 34456666788889999999999999988866 788889999999999999999999999999999887
No 76
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.91 E-value=0.00016 Score=62.76 Aligned_cols=122 Identities=17% Similarity=0.084 Sum_probs=91.2
Q ss_pred HHHHHHhcccCC-C--CchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012 158 SYCLIKAGANAS-D--QPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKV 234 (288)
Q Consensus 158 ~~v~~k~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~ 234 (288)
+.+..++..++. . .+....+.+.....+.......... ...++...+.-.+..++...++..+-+.++++.+....
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~ 93 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ 93 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 445555544322 2 3666777777777776665554443 22223333444455667777888999999999999999
Q ss_pred eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
.+.....|+..++++++++|++.+..++.+.+++.+|+.+....+.
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 9999999999999999999999999999999999999998776543
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.84 E-value=0.00023 Score=62.17 Aligned_cols=133 Identities=13% Similarity=0.033 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhH---------hcCccccCchHHHHHHHH
Q 023012 140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF---------FFEEFVLPSFYSFLLMLV 210 (288)
Q Consensus 140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~ 210 (288)
+...|+++.+++++|++..++-.|+ .+. -+.... |. ..+....+...+ +.+.....+...+...+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~wE~~--W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKK-WSWETM--WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCC-CchhHH--HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 4678999999999999999999999 432 222222 22 222211111111 112233356788888888
Q ss_pred HHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccCC---c----hhhHhHHHHHHHHHHHHHH
Q 023012 211 LSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAP---S----FGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 211 ~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~---~----~~~~~G~~li~~g~~~~~~ 277 (288)
.|++-.+++..+..++|+.+.++..++.. ++-+.+.+++.+++||-. + ..-.+|.++++.|+.+..+
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887 889999999999999754 2 3468899999999999887
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00015 Score=51.70 Aligned_cols=65 Identities=25% Similarity=0.072 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcccCCcc-eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 215 AFFAEVLLARGLQLEKTSK-VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~-~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
-..++.+...++|+.|.+. .+...-.-.+.+.+.++++|+|+.++.+++|..++++|++.++..+
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3488899999999998855 4666778899999999999999999999999999999999887654
No 79
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.73 E-value=2.7e-05 Score=63.47 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 223 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 223 (288)
.++.+++-++.|+.......+.. .. |..-.....+.+.++...+.++ ..+.++...+..-+..|.+-.+++...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G--G~-p~qQ~lGtT~GALifaiiv~~~--~~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG--GK-PYQQTLGTTLGALIFAIIVFLF--VSPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC--CC-hhHhhhhccHHHHHHHHHHhee--ecCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 46778888999988877776642 23 3333333344444444444333 2233467777777888888889999999
Q ss_pred HhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhhH----hHHHHHHHHHHHHHHhCCcc
Q 023012 224 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~~~~~ 282 (288)
++++..+.+++.+++. .+-+-+.++++++|||-.+..++ +..++++.|+.+..+++|.+
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n 141 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN 141 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence 9999999999999988 88999999999999999987764 45677788888777776633
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.70 E-value=0.00023 Score=51.26 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcccCCcce-eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 215 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
-..++.+...++|+.|.+.+ +....+..+.+.+.+++++||++|+.+++|..+++.|++.++..
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 34899999999999998654 55566889999999999999999999999999999999987644
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.68 E-value=0.00069 Score=49.05 Aligned_cols=63 Identities=19% Similarity=0.025 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcccCCcce-eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 214 LAFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 214 ~~~~~~~~~~~al~~~~~~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
.-.+++.+...++|+.|.+.+ +....+..+.+.+.+++++||++|+.+++|..+++.|++.++
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 344889999999999998665 555568889999999999999999999999999999998764
No 82
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.61 E-value=0.00016 Score=62.54 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-chhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHH
Q 023012 139 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFF 217 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 217 (288)
.+...|..+++.++++.+.+..++|+..++... ...- +....+...+..|..+.. ...+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~-------------------~~~~~~~l~~~~W~~G~~-~~~~ 62 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA-------------------GSGGRSYLRRPLWWIGLL-LMVL 62 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cchhhHHHhhHHHHHHHH-HHhc
Confidence 357799999999999999999999995442221 0000 000001111222222221 2235
Q ss_pred HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
+..+.+.|+...|++.++++..+..++..+++..++||+++..++.|+.+++.|..+.....
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 56677788889999999999999999999999999999999999999999999988765443
No 83
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.59 E-value=0.00034 Score=49.43 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHH
Q 023012 45 VLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALS 104 (288)
Q Consensus 45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~ 104 (288)
.....+...+..++..+++++|.+.+-.+.. ...+.+.+.+.+++||++|.+|++|+.+.
T Consensus 33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3444567788899999999999999988765 89999999999999999999999998763
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.58 E-value=0.0014 Score=49.89 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH-
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA- 84 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll- 84 (288)
+|..-++..+..+.+.+..+....++ +....++..+...++|+++...-.+..+...+++++.+..+.-..-++..++
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i 108 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLI 108 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999887776554444 3333334455667799999999999999999999999988877666655444
Q ss_pred HHH----HhcccchHHHHHHHHHHHHhhhh
Q 023012 85 ARI----ILREKLKIAEIGGLALSFFGVLF 110 (288)
Q Consensus 85 ~~~----~l~e~~~~~~~~g~~l~~~Gv~l 110 (288)
-++ .-|+|++.+|.+|+.+.++|+.+
T Consensus 109 D~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 109 DHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 443 35799999999999999999864
No 85
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.57 E-value=0.00081 Score=51.15 Aligned_cols=129 Identities=16% Similarity=0.053 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHH-HHHHHHHHHHHHHHHHHHH
Q 023012 145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYS-FLLMLVLSILAFFAEVLLA 223 (288)
Q Consensus 145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gi~~~~~~~~~~ 223 (288)
.++++.++++-++...+..++.++..++....+.....+.+....+....++.+...... -.+...-|+++..-..+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence 466788888888888877776665455777788878888877777666655433222211 1222335677777778888
Q ss_pred HhhcccCCcceeehhh-hHHHHHHHHHHH----hhccCCchhhHhHHHHHHHHHH
Q 023012 224 RGLQLEKTSKVANVQY-IEVALTQLWGMG----LSRIAPSFGRLVGCVLILVSVF 273 (288)
Q Consensus 224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~----~~~e~~~~~~~~G~~li~~g~~ 273 (288)
...++.+++....+.. -|.+.+.+++.+ .-++++++.+++|..++++|+.
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 8889999877666555 678888999986 3467899999999999999975
No 86
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.47 E-value=0.033 Score=48.24 Aligned_cols=228 Identities=12% Similarity=0.118 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHhhhh
Q 023012 39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLF 110 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~-------e~~~~~~~~g~~l~~~Gv~l 110 (288)
+......+.|++-.++...|-.+++|+..+...-+ ..+.-.+-.++-.++.+ ++-....++|++++++|+.+
T Consensus 71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai 150 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI 150 (344)
T ss_pred hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence 44556677888888999999999999998887554 44666666666554432 33355788999999999999
Q ss_pred eecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccc----CCCCchhHH----HHH
Q 023012 111 IFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA---GAN----ASDQPLVTV----FSF 179 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~---~~~----~~~~~~~~~----~~~ 179 (288)
....+...++ | .+++....+...|.+.+++|++..|..+.-... ..+ ...++.... ..-
T Consensus 151 ~g~AG~~Ke~---------~-~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv 220 (344)
T PF06379_consen 151 CGKAGSMKEK---------E-LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVV 220 (344)
T ss_pred HhHHHHhhhh---------h-hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhh
Confidence 9876543322 1 011112345568999999998877766664332 111 011111111 111
Q ss_pred HHHHHHhhhHHhHh---c-Cccc---------cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCc----ceeehhhhHH
Q 023012 180 GILASPAAGICLFF---F-EEFV---------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS----KVANVQYIEV 242 (288)
Q Consensus 180 ~~~~~~~~~~~~~~---~-~~~~---------~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~----~~~~~~~~~p 242 (288)
..-+.+..+...+. . .++. ++-..+....+..|..-...+.+|.++-.+.+.. --...+.+..
T Consensus 221 ~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~v 300 (344)
T PF06379_consen 221 LWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIV 300 (344)
T ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 12222222222221 1 1221 1123566777777788888888888888887743 4456677889
Q ss_pred HHHHHHHHHhhcc------CCchhhHhHHHHHHHHHHHHHH
Q 023012 243 ALTQLWGMGLSRI------APSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 243 v~~~l~~~~~~~e------~~~~~~~~G~~li~~g~~~~~~ 277 (288)
+++-+++. .++| ++-..-++|+.+++.++.++-+
T Consensus 301 l~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 301 LFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 99999995 5888 3445568888888888776543
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.42 E-value=0.00084 Score=47.39 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcccCCcceee-hhhhHHHHHHHHHHHhhccCCchhhHhHHHHH
Q 023012 215 AFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 268 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~-~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 268 (288)
-..++.++.+++|+.|.+.+=. ...+..+...+.+++++||++|+.+++|..+|
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3488899999999999988854 45699999999999999999999999999875
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.00042 Score=58.11 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 201 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 201 ~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
++.+...+..-+++-.+...+.+.++++.+|+...++..+..+++.+++++++|++++..||++..+..+|+.+....+.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 45566667777777789999999999999999999999999999999999999999999999999999999998766543
Q ss_pred c
Q 023012 281 E 281 (288)
Q Consensus 281 ~ 281 (288)
.
T Consensus 93 ~ 93 (244)
T PF04142_consen 93 Q 93 (244)
T ss_pred c
Confidence 3
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0033 Score=51.76 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 51 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
..+.+.+-..+++++|...-+++.++.|.+..+.++++++|++|..||+++...+.+..=.
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3477778899999999999999999999999999999999999999999999988887533
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.37 E-value=0.0017 Score=47.14 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHH-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 45 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
.+.-+..-.+...|++.+.+.+.+.+.++. ++.=++|++.++++.+|..++++++|+.+.+.|+.+.
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 334455567778899999999999999995 7888889999988888888999999999999999764
No 91
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0036 Score=47.75 Aligned_cols=136 Identities=11% Similarity=-0.022 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCc--hHHHHHHHHHHHHHHHH
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS--FYSFLLMLVLSILAFFA 218 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~~~~~ 218 (288)
..+..+.++.++++.....-...|+.+...+|....+.....+.+....+....++...+. ...-.+...-|+++.+-
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 4567788889999988888888887766667888888888888877777666543322221 11112222233444333
Q ss_pred HHHHHHhhcccCC-cceeehhhhHHHHHHHHHHHhhc----cCCchhhHhHHHHHHHHHHHHH
Q 023012 219 EVLLARGLQLEKT-SKVANVQYIEVALTQLWGMGLSR----IAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 219 ~~~~~~al~~~~~-~~~~~~~~~~pv~~~l~~~~~~~----e~~~~~~~~G~~li~~g~~~~~ 276 (288)
-..-....++.++ ........-|.+.+.+++-+=+. .+++...+.|.+++++|+++..
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 3333444566665 44455555778888888866554 5889999999999999955433
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.92 E-value=0.0081 Score=43.66 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023012 150 FSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLE 229 (288)
Q Consensus 150 ~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~ 229 (288)
+.+++|+..+-+.|+..++.++..... +....... -..+|.+++.. +++..+...|+..+.+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~--------------Ll~n~~y~ipf-~lNq~GSv~f~~~L~~~ 65 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF--------------LLLNPKYIIPF-LLNQSGSVLFFLLLGSA 65 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH--------------HHHhHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 346788889999998666433332221 21111111 11222222211 34678888999999999
Q ss_pred CCcceeehh-hhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 230 KTSKVANVQ-YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 230 ~~~~~~~~~-~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
|.+.+.++. .+.-+++.+.++++.+|..+...++|+.+++.|+.+
T Consensus 66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 999999995 799999999998888888899999999999999764
No 93
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.15 Score=44.33 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC---CCchhHHHHHHHHHHHhhhHHhHhcC-----ccc-------cCchHHHHH
Q 023012 143 LAVLVGLFSSITGGISYCLIKAGANAS---DQPLVTVFSFGILASPAAGICLFFFE-----EFV-------LPSFYSFLL 207 (288)
Q Consensus 143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~ 207 (288)
.=.+..+...+-++......|+..+++ -.+.+..+-.-+.-.+++....+... .+. ..++.+..-
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 444445555555666666666644433 23344444444444555544444331 111 113334444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 208 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 208 l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
+..-+++-.+-+-+++.++.+.+|+.......+..+.+.++..++++++++..||...++..+|+.+...
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 5555555567777999999999999999999999999999999999999999999999999999998873
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.014 Score=47.66 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012 38 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
+..++.+.+.++...+++.+.|.-..+-++-.-+++..+--+|+++.+.++++.+++.+||+|..+.+.|...=
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 35677788899999999999999999999999999999999999999999999999999999999999987653
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.017 Score=48.88 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012 5 SIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 78 (288)
Q Consensus 5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P 78 (288)
++++.++.+.-.+...+.-.......+.. ....++.++.+.+.+.++.+++.+.++-++.-++-.-+.|..+--
T Consensus 199 k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk 278 (327)
T KOG1581|consen 199 KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK 278 (327)
T ss_pred CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence 46777777777777776666554443332 123567788999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
+++++++.+.++.++++.||+|+.+.+.|..+=.
T Consensus 279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 9999999999999999999999999999986643
No 96
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.27 E-value=0.046 Score=47.38 Aligned_cols=143 Identities=12% Similarity=0.073 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc--Ccc----ccCchHHHHHHHHHH
Q 023012 139 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF--EEF----VLPSFYSFLLMLVLS 212 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~l~~~g 212 (288)
..-..|+++..+++++.+.+++-.||. | .-+....-..+.+++.++...+.... +++ ...+...+......|
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k-~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-K-GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-C-CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 356789999999999999999999995 3 34455555556666655543333222 221 123456677778889
Q ss_pred HHHHHHHHHHHHhhcccCCcceeehh-hhHHHHHHHHHHHhhcc-------CCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012 213 ILAFFAEVLLARGLQLEKTSKVANVQ-YIEVALTQLWGMGLSRI-------APSFGRLVGCVLILVSVFYTMYIGPEKE 283 (288)
Q Consensus 213 i~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~l~~~~~~~e-------~~~~~~~~G~~li~~g~~~~~~~~~~~~ 283 (288)
++-.++-..|-.++|+.+.+....+. -+.-+++.++--++.++ +-....++|.++.+.|+.+..+....|+
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 99889999999999999987655444 36677777776565443 2234678999999999998876544443
No 97
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.09 E-value=0.0041 Score=53.81 Aligned_cols=106 Identities=14% Similarity=-0.013 Sum_probs=75.9
Q ss_pred HHHHHHhccc--CCCCchhHHHHHHHHHHHhhhHHhHhc-Cc-cccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 023012 158 SYCLIKAGAN--ASDQPLVTVFSFGILASPAAGICLFFF-EE-FVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSK 233 (288)
Q Consensus 158 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~ 233 (288)
.++..|+..+ +-.-|...+..+...+.+......... .+ .+.++...|..++-.|+...++..+-+.++++.+.+.
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF 111 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence 3446677665 334455455444444444443332222 11 2222557888999999999999999999999999999
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCchhhHh
Q 023012 234 VANVQYIEVALTQLWGMGLSRIAPSFGRLV 263 (288)
Q Consensus 234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~ 263 (288)
+.++-.++|+++.++++++.+|+.+...+.
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~l 141 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYL 141 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcceEEE
Confidence 999999999999999999999988875433
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.80 E-value=0.029 Score=46.34 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhh
Q 023012 43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 110 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 110 (288)
..+...+....+..+....+++.+....+....+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34444556667777888999999999999999999999999999999999999999999999988753
No 99
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.80 E-value=0.0077 Score=52.41 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 205 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 205 ~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
....++.+.+.+.+...++.|+++.+++..+.+++..-+|+..++.++-+|++|+...++..+=++|++++...+.++
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 345566677788999999999999999999999999999999999999999999999999999999999887775543
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.19 E-value=0.0048 Score=48.86 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
...+...|..++++.+++.++.+...+-.|..+++|+++++++....++..++.+.|+++..+.++..
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 34677889999999999999999999999999999999999999999999999999988877665543
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=0.48 Score=36.29 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHh-CCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRS-GQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA 84 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll 84 (288)
+|..-.+..+..+...+..+...+ +++... .++..|..+.+|+++.+.-..-.....++.++....+.-...++..++
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll 112 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL 112 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 477778888888777666554443 322222 233344566777777776666667777777777766544444444333
Q ss_pred HHHH-----hcccchHHHHHHHHHHHHhhhhe
Q 023012 85 ARII-----LREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 85 ~~~~-----l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
--.| -+++++..+++|+++.++|+.++
T Consensus 113 iD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 113 IDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 2221 15889999999999999995444
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0079 Score=51.32 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=87.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH
Q 023012 137 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF 216 (288)
Q Consensus 137 ~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 216 (288)
...+...|.++++.+.+..+....+.|+..++.. . + ....++-+.+-... .....|.+.+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~----------~-------~~ra~~gg~~yl~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A----------S-------GLRAGEGGYGYLKE--PLWWAGMLTM 74 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h----------h-------cccccCCCcchhhh--HHHHHHHHHH
Confidence 3456778999999999999888888888544211 0 0 00001111111111 1222344433
Q ss_pred -HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 217 -FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 217 -~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
++...-+.+....|++.++++..+..+.+.+++..+++|++++...+|+.+.++|...+.....++
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 666666666677899999999999999999999999999999999999999999988766554443
No 103
>PRK02237 hypothetical protein; Provisional
Probab=94.13 E-value=0.27 Score=35.08 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=40.9
Q ss_pred ceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 233 KVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 233 ~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
..+...-.-.+.+.++.+.+-|++|+.++++|..+.++|+.++.+.+|
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 345566677888999999999999999999999999999988766554
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.89 E-value=2.7 Score=35.40 Aligned_cols=155 Identities=9% Similarity=0.037 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH-HHHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA-SIAA 85 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~-~ll~ 85 (288)
|++..-++-.....+..+.....++.+ +....-.++|..-..++.+-.-.++.+..+....+.++.-+.+ -..+
T Consensus 26 Dg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 26 DGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 444444444443333333333333332 3455678888999999999999999999999999988754444 3444
Q ss_pred HH-Hhcc---c--chHHHHHHHHHHHHhhhheeccccccc----ccCCC--CCCCcc---cc----cccc------cchh
Q 023012 86 RI-ILRE---K--LKIAEIGGLALSFFGVLFIFRRILTTQ----AVSGG--LVKPGE---AI----SLNV------RGSD 140 (288)
Q Consensus 86 ~~-~l~e---~--~~~~~~~g~~l~~~Gv~l~~~~~~~~~----~~~~~--~~~~~~---~~----~~~~------~~~~ 140 (288)
++ ++++ . -+....+|++++++|..+....+.+.. ..+++ ..++.+ ++ +++. ....
T Consensus 101 rfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~ 180 (254)
T PF07857_consen 101 RFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKK 180 (254)
T ss_pred hceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence 43 3432 2 244578899999999887654322221 11111 111001 11 0111 1124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012 141 HMLAVLVGLFSSITGGISYCLIKAGA 166 (288)
Q Consensus 141 ~~~G~l~~l~~~~~~a~~~v~~k~~~ 166 (288)
...|..+++++++.|+...+=.++..
T Consensus 181 RivG~~LAv~aGvlyGs~fvPv~Yi~ 206 (254)
T PF07857_consen 181 RIVGIILAVFAGVLYGSNFVPVIYIQ 206 (254)
T ss_pred hhHhHHHHHHHHHHHhcccchHHHHH
Confidence 78899999999999998888666643
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=92.71 E-value=0.38 Score=34.25 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=40.2
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
.+...-.-.+.+.++++.+-+++|+.++++|..+.+.|+.++.+.+|
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34555667888999999999999999999999999999998776654
No 106
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=5.5 Score=34.43 Aligned_cols=118 Identities=8% Similarity=0.015 Sum_probs=74.4
Q ss_pred HHHHHhcccCCCCch--hHHHHHHHHHHHhhhHHhHh-cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCccee
Q 023012 159 YCLIKAGANASDQPL--VTVFSFGILASPAAGICLFF-FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVA 235 (288)
Q Consensus 159 ~v~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~ 235 (288)
.+..|......+-+. ..+..|.+.+.+.....-.. .-++.+.+.....-.+-..++-......-.+++|+.+.....
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~t 107 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFT 107 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHH
Confidence 334455433333333 33346777776554443332 123333333222222222222223333445778999999999
Q ss_pred ehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 236 NVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 236 ~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
.+....|++..+...+++|.+++...+.....+.+|.....
T Consensus 108 v~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 108 VFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998877544
No 107
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.02 E-value=1.7 Score=35.49 Aligned_cols=109 Identities=8% Similarity=0.065 Sum_probs=84.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 6 IPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 6 ~~~~~~~~~R~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
..-.+..++..+++.++++.+.....++. -.+.+....+++.|++.+.-.+|-.+.++.++.+..+.+..++-.
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKl 262 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKL 262 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhC
Confidence 34456778889999988877755433211 112233446788888888888888889999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012 80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 114 (288)
Q Consensus 80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 114 (288)
-..+-+.++++|+.+...+.++.+++..-.+-...
T Consensus 263 p~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 263 PIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred hHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877665444
No 108
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=90.02 E-value=0.4 Score=40.32 Aligned_cols=129 Identities=11% Similarity=0.023 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012 144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 223 (288)
Q Consensus 144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 223 (288)
|++.+++|+++++...+=.|+... .| +....++++....+......+..+. . ..+.+...-|.+-..+..+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-gD-g~~fQw~~~~~i~~~g~~v~~~~~~-p----~f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-GD-GFFFQWVMCSGIFLVGLVVNLILGF-P----PFYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-CC-cHHHHHHHHHHHHHHHHHHHHhcCC-C----cceeHHHhhhhhhhcCceeeh
Confidence 567889999999999999998643 34 6667777666666665555554322 1 122233333444444555555
Q ss_pred HhhcccCCcceeehhh-hHHHHHHHHHHH-hhcc---CC--chhhHhHHHHHHHHHHHHHHhC
Q 023012 224 RGLQLEKTSKVANVQY-IEVALTQLWGMG-LSRI---AP--SFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~-~~~e---~~--~~~~~~G~~li~~g~~~~~~~~ 279 (288)
-.+|+++-+..-.+=. .+.+.+-..+-+ +||+ .+ ++..++|.+++++|..+....|
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 5555555554443333 355555555533 4444 22 4778999999999988776543
No 109
>PRK02237 hypothetical protein; Provisional
Probab=89.74 E-value=2.5 Score=30.25 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=38.3
Q ss_pred cccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheec
Q 023012 65 LPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113 (288)
Q Consensus 65 ~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 113 (288)
.+.+.+-.-+. ...+.+.+..+.+-|+|+++..++|..++++|+.++..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 33455544433 66677778899999999999999999999999977743
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.30 E-value=1.9 Score=30.74 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012 60 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 114 (288)
Q Consensus 60 ~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 114 (288)
-.+|-.+.+.+-.-+. ...+.+.+..+.+-|+|+++..++|..++++|+.++...
T Consensus 49 ~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 49 LTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3345555555544433 677778888999999999999999999999999887654
No 111
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.07 E-value=3 Score=35.25 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012 7 PLFETVFMRCTVTLILSYLWLRRSGQPIF-------GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 79 (288)
Q Consensus 7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~ 79 (288)
+..++.++.+.++.+++.......+.-.. .+.+...+.++.+..+.++..+...=++.-++..+..+...--.
T Consensus 219 ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKa 298 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKA 298 (367)
T ss_pred CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhH
Confidence 34566666777777766655555443211 12233456667777777777666666667777888888888889
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccc
Q 023012 80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 116 (288)
Q Consensus 80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 116 (288)
.+.+++.+++.++++.....+..+.+.|+.+=+.++.
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999877764
No 112
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.90 E-value=0.74 Score=38.94 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 211 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 211 ~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
-+++-..+..+.+.++....++...++..-..+|+.+++.-+++.+++..||.|+..+.+|.+.+-.
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 4455667788888888999999999999999999999999999999999999999999999887543
No 113
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=85.29 E-value=4.9 Score=34.59 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 206 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 206 ~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
-.+.-.|+.+..=..+-++++++.+.+..++.-+..++|-.+++.++-=|++++.-..-..+|-+|+.+..+++
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 34556677777777788999999999999999999999999999999999999998888888888776654443
No 114
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.04 E-value=2 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=40.0
Q ss_pred ceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 233 KVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 233 ~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
..+...-.-.+.+.++.+.+-|..|+.++++|..+-++|+.++...+|
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 345566677889999999999999999999999999999777666544
No 115
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=84.73 E-value=2.7 Score=29.94 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHH
Q 023012 214 LAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 275 (288)
Q Consensus 214 ~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~ 275 (288)
++..+..+|+.-+.+.+.+.+..+.+ +...++.+.+...-.|.+....+.|..+++.|+.+.
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 46678888999999999988887766 678889999977555566788899999999998753
No 116
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=84.49 E-value=12 Score=26.58 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012 76 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 76 ~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 115 (288)
.....+.+..+..-|.|+++..|+|..++++|+.++....
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 5666777778889999999999999999999998876543
No 117
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.81 E-value=1.3 Score=31.50 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 246 QLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 246 ~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
..++.++++|++++.+..|..+++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 34567899999999999999999988764
No 118
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=81.16 E-value=4.6 Score=28.76 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 53 LSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
-+...||.-+++.|.+.+..+.+ +.-.|+.+++..+..|....+.++|..+...|+.+.+
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 44567888999999999988855 6777888888876556666777889999999987753
No 119
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.54 E-value=2.8 Score=35.52 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHhcCc----cccC----chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhh
Q 023012 169 SDQPLVTVFSFGILASPAAGICLFFFEE----FVLP----SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYI 240 (288)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~ 240 (288)
-|.|....+++++....++....-.... +..| +...-.-+.-+.+.-......-+.++++.+.+..-.-..+
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 4778888999988887776665432211 1111 2222222222222223445566778899999999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012 241 EVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 274 (288)
Q Consensus 241 ~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~ 274 (288)
.-+|++++.+++++++-+..-..++.+|+.|-.+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 9999999999999999999999999999988554
No 120
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.26 E-value=6 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
.+-+.++.+.+||++++..+.+-.+...|+.++.
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3445679999999999999999999888887764
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.95 E-value=26 Score=25.06 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=33.9
Q ss_pred cccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012 65 LPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 112 (288)
Q Consensus 65 ~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 112 (288)
-+.++--+++- .+-..-+.++.+++||++++.+..|-++.+.++.++.
T Consensus 59 ~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 59 FSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred cCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 34444444433 3334456778899999999999999998888876653
No 122
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.82 E-value=7.7 Score=27.21 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012 246 QLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 246 ~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 276 (288)
..++.+.++|++++.++.|..++..|+.+..
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999887654
No 123
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=69.98 E-value=7.5 Score=33.04 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=43.0
Q ss_pred cccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012 65 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 114 (288)
Q Consensus 65 ~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 114 (288)
++.-++++...+--+++.+++.+.++.+++++.|+|..+.+.|.++-...
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888999999999999999999999999999999886543
No 124
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=60.79 E-value=8.8 Score=29.09 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=28.4
Q ss_pred hcccCCcceeehhhhHHHHHHHHHHHhhccCC--chhhHhHHHHHHHHHHHHH
Q 023012 226 LQLEKTSKVANVQYIEVALTQLWGMGLSRIAP--SFGRLVGCVLILVSVFYTM 276 (288)
Q Consensus 226 l~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~--~~~~~~G~~li~~g~~~~~ 276 (288)
+..-+..+.+.+.|+.|+++++++.+..+.-. ....++|+++-.+...+..
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLA 121 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888888888766533211 2233444444444444433
No 125
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=59.96 E-value=69 Score=24.94 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhcc-CCchhhHhHHHHHHHHHHHHHHh
Q 023012 207 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRI-APSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 207 ~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e-~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+.+.....+.-++..|.+.-.... +...+..+ ++-+....++.+++++ ++..-.+.+..+-++..++....
T Consensus 53 WtvLy~l~~iSa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~~ 125 (161)
T COG3476 53 WTVLYALIGISAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIV 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 344444445577777777655555 45555555 8899999999999998 88888888887766655554443
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=56.81 E-value=3.6 Score=34.84 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhcccchhHHHHhhhHHHHHHH-HHHHhccc-chHHHHHHHHHHHHhhh
Q 023012 43 LLVLRALVGFLSLFSFVY-SIQRLPLSQATVLSFTAPIMASIA-ARIILREK-LKIAEIGGLALSFFGVL 109 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~i~~~~P~~~~ll-~~~~l~e~-~~~~~~~g~~l~~~Gv~ 109 (288)
.+.+..+...++...|++ -+.-.+-+...++++...+.++++ -.++||+| +.....+++++.++-..
T Consensus 24 ~l~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lL 93 (381)
T PF05297_consen 24 SLLFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLL 93 (381)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence 344444444444444433 344455555556655444443333 33444544 45555555555544433
No 127
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=54.17 E-value=1.5 Score=36.58 Aligned_cols=136 Identities=11% Similarity=0.165 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHH
Q 023012 139 SDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFF 217 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 217 (288)
...++|..++-.=.+|-........++.++ .+.|....+.....-.++-.+...+..+.. ...|-.-+.+++.-.=
T Consensus 14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~---~~~~~hYilla~~DVE 90 (336)
T KOG2766|consen 14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI---KAKWRHYILLAFVDVE 90 (336)
T ss_pred hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH---HHHHHHhhheeEEeec
Confidence 445666666555555555455555544433 333443333332222233333333332111 1223333444555556
Q ss_pred HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012 218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 277 (288)
++.+..+|.++.+-+.+..+.-...+.-.+++|++++-+..+.++.|.++-+.|+.++..
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 777778889999999999999999999999999999999999999999988888876554
No 128
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=52.59 E-value=8.1 Score=33.26 Aligned_cols=125 Identities=12% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhH-HhHhcCccc-----cC---------chHHHHHHHHHHH
Q 023012 149 LFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGI-CLFFFEEFV-----LP---------SFYSFLLMLVLSI 213 (288)
Q Consensus 149 l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~---------~~~~~~~l~~~gi 213 (288)
+++.+||+......|-..++.-.+ ....+-..++.++... ..+..++.. .| ++......+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 455677777777777654422222 1233333333333322 223222211 11 2333344444455
Q ss_pred HHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCc--hhhHhHHHHHHHHHHHH
Q 023012 214 LAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYT 275 (288)
Q Consensus 214 ~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~--~~~~~G~~li~~g~~~~ 275 (288)
.-.++..+..++....+.+++-++.. +..+.+..+.|+ ++.+.+ ..-+.|..+++.++++-
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 55589999999988888887777765 556667777765 344443 35667888888887763
No 129
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.95 E-value=14 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHHhCCccccc
Q 023012 262 LVGCVLILVSVFYTMYIGPEKEMN 285 (288)
Q Consensus 262 ~~G~~li~~g~~~~~~~~~~~~~~ 285 (288)
++|++.+++-+.+..+|.+||.+.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Confidence 345555555555555555555433
No 130
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=1.4e+02 Score=23.87 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=79.7
Q ss_pred hcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 023012 89 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA 168 (288)
Q Consensus 89 l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~ 168 (288)
++++-......|+++.+.|+..+..|..... ......|..+ +++++..-.+..-.|+-
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~------------------~l~~~vG~~l-li~Gi~~ii~af~~r~~--- 72 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTV------------------ALVYVVGILL-LISGIIEIISAFGNRSD--- 72 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHH------------------HHHHHHHHHH-HHHHHHHHHHHHHhccc---
Confidence 4666677788899999999999998864331 2345566443 44444444444444431
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHH-HHHHHHHHHHhhcccCCcceeehhhhHHHHHHH
Q 023012 169 SDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQL 247 (288)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l 247 (288)
++... .......+......... .+. ........++...+. +.+.........+..+ -.......-+++.+
T Consensus 73 -~~~W~-lll~Gil~i~~gil~~~--~~~--~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii 143 (185)
T COG3247 73 -NSFWP-LLLSGILSILLGILAGF--NPG--LGALVLTYLIAIWFIASGILRIVVAFRLRSLP---GWWWMIISGVLGII 143 (185)
T ss_pred -ccchH-HHHHHHHHHHHHHHHHH--hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHH
Confidence 11111 11122223222222111 111 112222222222222 2233333333222222 34446667788888
Q ss_pred HHHHhhccCCc----hhhHhHHHHHHHHHHHHHH
Q 023012 248 WGMGLSRIAPS----FGRLVGCVLILVSVFYTMY 277 (288)
Q Consensus 248 ~~~~~~~e~~~----~~~~~G~~li~~g~~~~~~ 277 (288)
.+++..-+|.. ...++|+-+++.|..+...
T Consensus 144 ~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~~ 177 (185)
T COG3247 144 AGLILLFNPVASAWILGLLLGIELIFQGIALIAF 177 (185)
T ss_pred HHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877433 3456788888888776553
No 131
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=46.14 E-value=3.2e+02 Score=27.32 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=83.8
Q ss_pred chhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHH
Q 023012 68 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLV 147 (288)
Q Consensus 68 ~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 147 (288)
+.+.++..+.|+-.+.++.....+|.+.+.+.+.+-.++|.+-+.... . .-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~~~~~-------------------------~-~~~-- 62 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQPKH-------------------------S-LKY-- 62 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhCccc-------------------------h-HHH--
Confidence 566778889999999998887777755555666666666765542211 1 111
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023012 148 GLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQ 227 (288)
Q Consensus 148 ~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~ 227 (288)
+++.+...+.....++..++. +........+.............+ ..+++.++...+.-+++.+.-+..+.++++
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~e~~l~~~l~~if~~~~~ 137 (764)
T TIGR02865 63 -LLLVAVIILLSYVLKNLTDKK--KTVVPPIVVFLEAAVYAIFGYLQN--KLVTPLDFILSIVEASLSFVLYYIFNYSIP 137 (764)
T ss_pred -HHHHHHHHHHHHHhhhhhccc--chhhhhhhhhHHHHHHHHHHHhhC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223333333322111 111111111112112111112111 223567888888888888866777777776
Q ss_pred ccCCccee-ehhhhHHHHH-HHHHHHhhc------cCCchhhHhHHHHHHHH
Q 023012 228 LEKTSKVA-NVQYIEVALT-QLWGMGLSR------IAPSFGRLVGCVLILVS 271 (288)
Q Consensus 228 ~~~~~~~~-~~~~~~pv~~-~l~~~~~~~------e~~~~~~~~G~~li~~g 271 (288)
.....+.. .+..=|++.- ++++.++.| ..++...+++..+|+..
T Consensus 138 ~~~~~~~~~~~~~eei~s~~il~~~~l~G~~~~~i~~~sl~~il~~~~vl~~ 189 (764)
T TIGR02865 138 CLKNGRTKHLLTNEEIVSLIILIASVLTGLRGLSIWGLSLENIIARLAVLLI 189 (764)
T ss_pred HHHcccccCCCcHhHHHHHHHHHHHHHHccCCCEEEeeEHHHHHHHHHHHHH
Confidence 65443322 2333333322 222222233 13566666666666543
No 132
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=44.76 E-value=53 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhheeccc
Q 023012 96 AEIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 96 ~~~~g~~l~~~Gv~l~~~~~ 115 (288)
...+|..+.+.|++++..|+
T Consensus 4 v~v~G~~lv~~Gii~~~lPG 23 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG 23 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC
Confidence 35678899999999998886
No 133
>COG2323 Predicted membrane protein [Function unknown]
Probab=42.22 E-value=1.7e+02 Score=24.19 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHH
Q 023012 9 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 88 (288)
Q Consensus 9 ~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~ 88 (288)
+.-.++|.++..+.++.+++..+++....-...-......++...+...+.. .++...+.+...+.-++..+++++-
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~---~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDD---DVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999888877666655555555555555555554433 3344444455555556666667665
Q ss_pred hc
Q 023012 89 LR 90 (288)
Q Consensus 89 l~ 90 (288)
.|
T Consensus 81 ~k 82 (224)
T COG2323 81 LK 82 (224)
T ss_pred hc
Confidence 55
No 134
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=37.66 E-value=1.5e+02 Score=27.56 Aligned_cols=26 Identities=8% Similarity=0.206 Sum_probs=20.5
Q ss_pred CchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012 257 PSFGRLVGCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 257 ~~~~~~~G~~li~~g~~~~~~~~~~~ 282 (288)
++..|++...++++|++++.+.++++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~ 279 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGR 279 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78899999999999988776544433
No 135
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=36.64 E-value=54 Score=17.63 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=6.7
Q ss_pred chhhHhHHHHHHH
Q 023012 258 SFGRLVGCVLILV 270 (288)
Q Consensus 258 ~~~~~~G~~li~~ 270 (288)
++..++|..++..
T Consensus 11 ~~~~~~G~~l~~~ 23 (34)
T TIGR01167 11 SLLLLLGLLLLGL 23 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666633333
No 136
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=35.43 E-value=58 Score=24.46 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 023012 139 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ 171 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~ 171 (288)
.++.+|.++.-.-++.|++|.++.|.+.++.|+
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ededS 134 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDEDEDS 134 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCCccc
Confidence 456788888888888999999999997654443
No 137
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=35.06 E-value=76 Score=24.19 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=28.0
Q ss_pred ccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhh
Q 023012 66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV 108 (288)
Q Consensus 66 ~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv 108 (288)
+.-.++.+.++.|+++.+++.++ -+++...+.+.++.++.|.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg~ 114 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLGL 114 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Confidence 34457788999999999988764 4555555555555555444
No 138
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.32 E-value=1.6e+02 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.6
Q ss_pred cccchHHHHHHHHHHHHhhhheec
Q 023012 90 REKLKIAEIGGLALSFFGVLFIFR 113 (288)
Q Consensus 90 ~e~~~~~~~~g~~l~~~Gv~l~~~ 113 (288)
..|++..+-.++.+.++|++++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999999999988764
No 139
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=30.02 E-value=50 Score=28.12 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=18.7
Q ss_pred CchhhHhHHHHHHHHHHHHHHhC
Q 023012 257 PSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 257 ~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
+|..|+++..+++.|+.+..++.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999987765443
No 140
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=29.81 E-value=34 Score=25.58 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=14.4
Q ss_pred CcceeehhhhHHHHHHHHHHHh
Q 023012 231 TSKVANVQYIEVALTQLWGMGL 252 (288)
Q Consensus 231 ~~~~~~~~~~~pv~~~l~~~~~ 252 (288)
..+.+.+.|.-|++.++.+..+
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777543
No 141
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.66 E-value=35 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhCC
Q 023012 264 GCVLILVSVFYTMYIGP 280 (288)
Q Consensus 264 G~~li~~g~~~~~~~~~ 280 (288)
|.++++.+..++.+++|
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44455555555444433
No 142
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.38 E-value=1.6e+02 Score=18.34 Aligned_cols=32 Identities=6% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHhhhHHHHHHHHHHHhcccchHHHHHHHHHH
Q 023012 73 LSFTAPIMASIAARIILREKLKIAEIGGLALS 104 (288)
Q Consensus 73 i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~ 104 (288)
++...-.++.++.+++.||+.+.|-.-++.++
T Consensus 8 ~Y~ig~~is~~iT~flskDs~~iRllsa~lIG 39 (55)
T PF10753_consen 8 FYAIGAVISALITFFLSKDSLRIRLLSAILIG 39 (55)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44566778888999999998888866665543
No 143
>PRK02935 hypothetical protein; Provisional
Probab=27.19 E-value=1e+02 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=21.1
Q ss_pred hcccchHHHHHHHHHHHHhhhheecc
Q 023012 89 LREKLKIAEIGGLALSFFGVLFIFRR 114 (288)
Q Consensus 89 l~e~~~~~~~~g~~l~~~Gv~l~~~~ 114 (288)
..-|+++.+-.++.+.++|.+++...
T Consensus 5 ~ssKINkiRt~aL~lvfiG~~vMy~G 30 (110)
T PRK02935 5 YSNKINKIRTFALSLVFIGFIVMYLG 30 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999998887544
No 144
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.45 E-value=23 Score=22.47 Aligned_cols=19 Identities=26% Similarity=0.453 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhheeccc
Q 023012 97 EIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 97 ~~~g~~l~~~Gv~l~~~~~ 115 (288)
|.+|+++.+.|+.++.+..
T Consensus 1 kiigi~Llv~GivLl~~G~ 19 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGY 19 (59)
T ss_pred CeeeehHHHHHHHHHHhhh
Confidence 3567888889988886653
No 145
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=25.77 E-value=5.7e+02 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhccCCch-hhHhHHHHHHHHHH
Q 023012 240 IEVALTQLWGMGLSRIAPSF-GRLVGCVLILVSVF 273 (288)
Q Consensus 240 ~~pv~~~l~~~~~~~e~~~~-~~~~G~~li~~g~~ 273 (288)
..|+-+.+++.+.-.-..+. ..+.|+.+++.+.+
T Consensus 355 ~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 355 GMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 45666777776543333332 23344444444433
No 146
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.52 E-value=75 Score=18.72 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=11.3
Q ss_pred CchhhHhHHHHHHHHHH
Q 023012 257 PSFGRLVGCVLILVSVF 273 (288)
Q Consensus 257 ~~~~~~~G~~li~~g~~ 273 (288)
|+|..++=.++|+.|+.
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 56666666677776664
No 147
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=24.94 E-value=3.1e+02 Score=20.75 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccC
Q 023012 215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIA 256 (288)
Q Consensus 215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~ 256 (288)
+..++..+...-.+.+......+-..+-.....+..++++.+
T Consensus 53 g~a~~~v~~~~~~~~~~~~~l~l~~~~l~ln~~W~~ifF~~~ 94 (148)
T PF03073_consen 53 GIASYLVWRKGGGSPRRRRALALYAIQLALNFAWSPIFFGLR 94 (148)
T ss_pred HHHHHhhHhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333334444445555566666666666655543
No 148
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.28 E-value=1.5e+02 Score=22.07 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=29.1
Q ss_pred ccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhh
Q 023012 66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 110 (288)
Q Consensus 66 ~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 110 (288)
+...++.+.+..|++..+++..+ +..+...+..+++.++.|..+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e~~~~l~~l~~l~~ 109 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL-GSYLGGSELWAILGGLLGLAL 109 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999988888654 455555566666666666543
No 149
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=23.76 E-value=3e+02 Score=20.16 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023012 97 EIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 161 (288)
Q Consensus 97 ~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~ 161 (288)
+.++..++++|+.+....... ++.....+.+.+.|....++..+.+..+...
T Consensus 43 ~~l~~~~~~~G~~~~~~~~~~-------------~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~ 94 (131)
T cd08554 43 HLLAFVLGLVGLLAVFLFHNA-------------GGIANLYSLHSWLGLATVLLFLLQFLSGFVL 94 (131)
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------cCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899998877655421 1111223568889988877777766555444
No 150
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.00 E-value=75 Score=24.54 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=6.9
Q ss_pred eehhhhHHHHHHHHH
Q 023012 235 ANVQYIEVALTQLWG 249 (288)
Q Consensus 235 ~~~~~~~pv~~~l~~ 249 (288)
+.+.|+-|+++++.+
T Consensus 78 a~lvYllPLl~li~g 92 (154)
T PRK10862 78 ALLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455444444
No 151
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.67 E-value=72 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.087 Sum_probs=15.3
Q ss_pred hhHhHHHHHHHHHHHHHHhCCcccc
Q 023012 260 GRLVGCVLILVSVFYTMYIGPEKEM 284 (288)
Q Consensus 260 ~~~~G~~li~~g~~~~~~~~~~~~~ 284 (288)
+-.+-..++..|+++..+++++|++
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchh
Confidence 3334456677777777777665543
No 152
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.57 E-value=4.2e+02 Score=21.39 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch
Q 023012 45 VLRALVGFLSLFSFVYSIQRLPLSQ 69 (288)
Q Consensus 45 ~~~~~~~~~~~~~~~~a~~~~~~~~ 69 (288)
++.+....+.+...+...+.+|+..
T Consensus 150 ~~~~~~~~~~w~~~~~~~~~lp~~i 174 (206)
T PF06570_consen 150 ILISVLAMVLWIVIFVLTSFLPPVI 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccC
Confidence 3334444444555555555566553
No 153
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=22.38 E-value=2.1e+02 Score=17.95 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhheecccc
Q 023012 99 GGLALSFFGVLFIFRRIL 116 (288)
Q Consensus 99 ~g~~l~~~Gv~l~~~~~~ 116 (288)
.|++..+.|+.++..|+.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~ 19 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA 19 (72)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 477888899999988863
No 154
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.30 E-value=1.3e+02 Score=17.98 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHhCCccc
Q 023012 263 VGCVLILVSVFYTMYIGPEKE 283 (288)
Q Consensus 263 ~G~~li~~g~~~~~~~~~~~~ 283 (288)
+-..++..|+++..+++++|+
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHcccchh
Confidence 344555666666666655443
No 155
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.18 E-value=88 Score=26.62 Aligned_cols=22 Identities=14% Similarity=0.495 Sum_probs=18.9
Q ss_pred CchhhHhHHHHHHHHHHHHHHh
Q 023012 257 PSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 257 ~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+|..|++...+++.|+.+..++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998876655
No 156
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=21.03 E-value=1.1e+02 Score=16.76 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcccchHH
Q 023012 78 PIMASIAARIILREKLKIA 96 (288)
Q Consensus 78 P~~~~ll~~~~l~e~~~~~ 96 (288)
-+..+++..++.|||++..
T Consensus 13 ~iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 13 FIYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3445667777888887754
No 157
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=20.78 E-value=91 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.2
Q ss_pred CchhhHhHHHHHHHHHHHHHHh
Q 023012 257 PSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 257 ~~~~~~~G~~li~~g~~~~~~~ 278 (288)
+|..|++...+++.|+.+..+.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998766543
No 158
>PF15102 TMEM154: TMEM154 protein family
Probab=20.57 E-value=62 Score=24.70 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhCCcc
Q 023012 264 GCVLILVSVFYTMYIGPEK 282 (288)
Q Consensus 264 G~~li~~g~~~~~~~~~~~ 282 (288)
+.++++..++++.+.+|||
T Consensus 68 LvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHheeEEeecc
Confidence 3334444444444433333
No 159
>PRK11469 hypothetical protein; Provisional
Probab=20.31 E-value=1.2e+02 Score=24.30 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=27.5
Q ss_pred ceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHH-HHHHHH
Q 023012 233 KVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLIL-VSVFYT 275 (288)
Q Consensus 233 ~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~-~g~~~~ 275 (288)
..+.++...|..+...+-.+-+-.+...+|+|..+.+ .|..++
T Consensus 42 ~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi 85 (188)
T PRK11469 42 IFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMI 85 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888876666555566677766544 354443
No 160
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=20.13 E-value=7.6e+02 Score=23.48 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHhhcccCC
Q 023012 202 FYSFLLMLVLSILAF-FAEVLLARGLQLEKT 231 (288)
Q Consensus 202 ~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~ 231 (288)
..+|.++...|+..+ +-|..+....++-+.
T Consensus 394 ~~~~~~~~~~g~~~~~iyy~vF~f~I~kfnl 424 (530)
T PRK10110 394 STKWYMVPVVAAIWFVVYYVIFRFAITRFNL 424 (530)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 367888888888866 666667777776543
No 161
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=92 Score=19.85 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.5
Q ss_pred hHhHHHHHHHHHHHHHHhCCcccc
Q 023012 261 RLVGCVLILVSVFYTMYIGPEKEM 284 (288)
Q Consensus 261 ~~~G~~li~~g~~~~~~~~~~~~~ 284 (288)
..+-..+...|+++..+++++|++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccchhh
Confidence 344556666777777777766654
Done!