Query 023012
Match_columns 288
No_of_seqs 152 out of 1782
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 7.3E-10 2.5E-14 82.8 6.5 70 211-280 35-106 (137)
2 3b5d_A Multidrug transporter E 99.0 1.2E-08 4.2E-13 73.6 11.8 100 145-279 4-105 (110)
3 2i68_A Protein EMRE; transmemb 98.7 1.4E-08 4.8E-13 75.8 5.9 72 44-115 33-105 (137)
4 3b5d_A Multidrug transporter E 98.7 2.2E-07 7.4E-12 67.0 12.0 71 44-114 33-104 (110)
5 2l2t_A Receptor tyrosine-prote 55.6 14 0.00049 21.0 3.2 6 277-282 35-40 (44)
6 3l1l_A Arginine/agmatine antip 20.8 3.9E+02 0.013 22.7 11.3 40 239-278 388-427 (445)
7 3o7q_A L-fucose-proton symport 18.3 4.2E+02 0.014 22.0 16.4 48 64-111 57-106 (438)
8 3arc_T Photosystem II reaction 16.0 93 0.0032 16.2 1.8 15 245-259 15-29 (32)
9 2hac_A T-cell surface glycopro 11.2 1.8E+02 0.0063 15.2 2.1 24 72-95 7-30 (33)
10 3b9w_A Ammonium transporter fa 9.5 8.6E+02 0.029 21.0 16.8 185 18-228 151-346 (407)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.99 E-value=7.3e-10 Score=82.83 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=51.8
Q ss_pred HHHH-HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012 211 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280 (288)
Q Consensus 211 ~gi~-~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 280 (288)
.+++ ..+++.+|.+++|+.+++++..+ ..+.|+++.+++++++||++++.+++|+.+|++|+++....++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444 45999999999999999999999 8999999999999999999999999999999999999877543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.96 E-value=1.2e-08 Score=73.56 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHH-HHHHHHHHH
Q 023012 145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSIL-AFFAEVLLA 223 (288)
Q Consensus 145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-~~~~~~~~~ 223 (288)
.++.+++.++-+..+...|+. ++ . . ..+.. ..++. ..+++.++.
T Consensus 4 ~l~l~~a~~~e~~~~~~lK~s-~~---~-~----------------------------~~~~~--~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 4 YIYLGGAILAEVIGTTLMKFS-EG---F-T----------------------------RLWPS--VGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cC---c-c----------------------------hHHHH--HHHHHHHHHHHHHHH
Confidence 466777888888888888873 11 0 0 11222 24444 459999999
Q ss_pred HhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012 224 RGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 279 (288)
Q Consensus 224 ~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 279 (288)
+++|+.|.+++..+ ..+.|+.+.+++++++||++|+.+++|..+|++|++.....+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999988 899999999999999999999999999999999999887654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.73 E-value=1.4e-08 Score=75.84 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 115 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 115 (288)
.++..++..+++.++.+++++.|++.+..+ ..+.|++++++++++++|++++.+++|+++.+.|++++...+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456677788999999999999999999999 799999999999999999999999999999999999986543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.73 E-value=2.2e-07 Score=66.95 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012 44 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 114 (288)
Q Consensus 44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 114 (288)
.....++...+..++.+++++.|.+.+..+ ..+.|+++.+++++++||+++.+|++|+.+.+.|++++...
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456667778899999999999999999999 68999999999999999999999999999999999988544
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.65 E-value=14 Score=21.03 Aligned_cols=6 Identities=17% Similarity=-0.241 Sum_probs=2.2
Q ss_pred HhCCcc
Q 023012 277 YIGPEK 282 (288)
Q Consensus 277 ~~~~~~ 282 (288)
++++++
T Consensus 35 RRRr~~ 40 (44)
T 2l2t_A 35 RRKSIK 40 (44)
T ss_dssp HTTCSS
T ss_pred hhhhhh
Confidence 333333
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=20.79 E-value=3.9e+02 Score=22.67 Aligned_cols=40 Identities=8% Similarity=-0.078 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012 239 YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278 (288)
Q Consensus 239 ~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 278 (288)
..-++++.+...+..-.........|...++.|..++...
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 427 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALN 427 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444332222234556777777777666543
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=18.26 E-value=4.2e+02 Score=22.02 Aligned_cols=48 Identities=17% Similarity=-0.081 Sum_probs=29.7
Q ss_pred hcccchhHHHHhhhHHHHHHHHHHH--hcccchHHHHHHHHHHHHhhhhe
Q 023012 64 RLPLSQATVLSFTAPIMASIAARII--LREKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 64 ~~~~~~~~~i~~~~P~~~~ll~~~~--l~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
..+......+.....+...+.+.+. +.||.++|+.+.....+.++..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3566666777666666555544443 34889988887666655555443
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=16.03 E-value=93 Score=16.23 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=9.4
Q ss_pred HHHHHHHhhccCCch
Q 023012 245 TQLWGMGLSRIAPSF 259 (288)
Q Consensus 245 ~~l~~~~~~~e~~~~ 259 (288)
++++-.++++|+|..
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 444555677887764
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=11.20 E-value=1.8e+02 Score=15.18 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHhcccchH
Q 023012 72 VLSFTAPIMASIAARIILREKLKI 95 (288)
Q Consensus 72 ~i~~~~P~~~~ll~~~~l~e~~~~ 95 (288)
++...--+..+++..++.|||++.
T Consensus 7 iLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 7 LLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhc
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=9.47 E-value=8.6e+02 Score=20.96 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcc--
Q 023012 18 VTLILSYLWLRRSG----QPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILRE-- 91 (288)
Q Consensus 18 ~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e-- 91 (288)
.+.+....++.+|+ .+. .+.+......++.+...+++..|.-++..-.......++...-.....+++++..+
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~-~~~hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~ 229 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIE-SDATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALF 229 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCc-CCCCCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred cchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcc
Q 023012 92 KLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC-----LIKAGA 166 (288)
Q Consensus 92 ~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v-----~~k~~~ 166 (288)
+-.+....++.=+..+-.+.+.+...... .+-..+.++++++..-.... +.|++
T Consensus 230 ~~gK~~~~~~~nG~LAGLVAITa~~~~v~--------------------p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l- 288 (407)
T 3b9w_A 230 HKGKASIVDMANAALAGGVAIGSVCNIVG--------------------PVGAFVIGLLGGAISVVGFVFIQPMLESKA- 288 (407)
T ss_dssp TTTCCCHHHHHHHTTHHHHHHTTTTTTSC--------------------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHS-
T ss_pred hCCCCCHHHHHHhhhhhhheeccCCCCCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q ss_pred cCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023012 167 NASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQL 228 (288)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~ 228 (288)
+.|++....-.....+..-.+...++..+. +..+...+......+........+.+++
T Consensus 289 -~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~---~~~Ql~g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 289 -KTIDTCGVHNLHGLPGLLGGFSAILIVPGI---AVAQLTGIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp -CCCCTTCHHHHTTHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCCCeecchHHHHHHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!