Query 023012
Match_columns 288
No_of_seqs 152 out of 1782
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 14:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023012.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023012hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 17.4 50 0.0036 15.1 2.1 14 245-258 15-28 (30)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.9 84 0.0061 14.0 2.6 18 143-160 3-20 (27)
3 d2iuba2 f.17.3.1 (A:286-349) M 9.7 94 0.0069 17.3 2.4 16 266-281 48-63 (64)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 4.1 6.9E+02 0.05 18.3 19.8 16 76-91 191-206 (447)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 3.8 2.8E+02 0.021 13.3 3.3 22 138-159 14-35 (37)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 3.5 2.9E+02 0.021 16.6 2.3 6 268-273 42-47 (100)
7 d1uptb_ a.193.1.1 (B:) Golgi a 2.9 2.9E+02 0.021 15.1 1.4 21 82-102 11-31 (58)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.9 4.9E+02 0.036 15.7 2.9 8 267-274 47-54 (107)
9 d1rh5b_ f.23.28.1 (B:) Preprot 2.6 5.1E+02 0.037 13.9 2.8 23 139-161 26-48 (56)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.3 9.9E+02 0.072 16.6 13.0 22 90-111 283-304 (417)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.39 E-value=50 Score=15.09 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=7.7
Q ss_pred HHHHHHHhhccCCc
Q 023012 245 TQLWGMGLSRIAPS 258 (288)
Q Consensus 245 ~~l~~~~~~~e~~~ 258 (288)
+..+-.++++|+|.
T Consensus 15 ~lfffaiffreppr 28 (30)
T d2axtt1 15 ALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHTSCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 33344456677764
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.91 E-value=84 Score=13.99 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023012 143 LAVLVGLFSSITGGISYC 160 (288)
Q Consensus 143 ~G~l~~l~~~~~~a~~~v 160 (288)
+|.+..-++++.||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777888776643
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.74 E-value=94 Score=17.30 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhCCc
Q 023012 266 VLILVSVFYTMYIGPE 281 (288)
Q Consensus 266 ~li~~g~~~~~~~~~~ 281 (288)
+.++.++....+.++|
T Consensus 48 ~~~~~~~~~~~~f~rk 63 (64)
T d2iuba2 48 VMGVIAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333334444444333
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.08 E-value=6.9e+02 Score=18.27 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHhcc
Q 023012 76 TAPIMASIAARIILRE 91 (288)
Q Consensus 76 ~~P~~~~ll~~~~l~e 91 (288)
...+...++..++.+|
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHhccc
Confidence 3344444444454443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.83 E-value=2.8e+02 Score=13.33 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 023012 138 GSDHMLAVLVGLFSSITGGISY 159 (288)
Q Consensus 138 ~~~~~~G~l~~l~~~~~~a~~~ 159 (288)
...-.+|.++.+.-++.++-|.
T Consensus 14 rtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888776553
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.54 E-value=2.9e+02 Score=16.58 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023012 268 ILVSVF 273 (288)
Q Consensus 268 i~~g~~ 273 (288)
++.+..
T Consensus 42 ~V~~~l 47 (100)
T d3dtub2 42 FVTLLI 47 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.93 E-value=2.9e+02 Score=15.07 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=14.0
Q ss_pred HHHHHHHhcccchHHHHHHHH
Q 023012 82 SIAARIILREKLKIAEIGGLA 102 (288)
Q Consensus 82 ~ll~~~~l~e~~~~~~~~g~~ 102 (288)
+++-+...+|..+..++++.+
T Consensus 11 vLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 345566667888877777654
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.87 E-value=4.9e+02 Score=15.73 Aligned_cols=8 Identities=0% Similarity=0.305 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 023012 267 LILVSVFY 274 (288)
Q Consensus 267 li~~g~~~ 274 (288)
+++.+.+.
T Consensus 47 ~~V~~~~~ 54 (107)
T d3ehbb2 47 IFVCLLLL 54 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344333
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.56 E-value=5.1e+02 Score=13.91 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 023012 139 SDHMLAVLVGLFSSITGGISYCL 161 (288)
Q Consensus 139 ~~~~~G~l~~l~~~~~~a~~~v~ 161 (288)
....-|..+.+++.++|.++.+.
T Consensus 26 ia~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 26 VAKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788877766553
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.30 E-value=9.9e+02 Score=16.63 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=12.7
Q ss_pred cccchHHHHHHHHHHHHhhhhe
Q 023012 90 REKLKIAEIGGLALSFFGVLFI 111 (288)
Q Consensus 90 ~e~~~~~~~~g~~l~~~Gv~l~ 111 (288)
.+|.+.++...+.....++..+
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~ 304 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhhh
Confidence 3666666666555555555444
Done!