BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023015
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGF
SPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGM
FAYGLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFET
EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK
GTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS

High Scoring Gene Products

Symbol, full name Information P value
LTO1
Lumen Thiol Oxidoreductase 1 		protein from Arabidopsis thaliana 8.4e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023015
        (288 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2128028 - symbol:LTO1 "Lumen Thiol Oxidoreduct...   594  8.4e-58   1


>TAIR|locus:2128028 [details] [associations]
            symbol:LTO1 "Lumen Thiol Oxidoreductase 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0003955 "NAD(P)H dehydrogenase (quinone) activity"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0010207
            "photosystem II assembly" evidence=RCA;IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:3.40.30.10
            InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0003955 GO:GO:0010207
            InterPro:IPR012932 Pfam:PF07884 SMART:SM00756 EMBL:AY099728
            EMBL:AY128903 IPI:IPI00540301 RefSeq:NP_567988.1 UniGene:At.43284
            ProteinModelPortal:Q8L540 STRING:Q8L540 PRIDE:Q8L540
            EnsemblPlants:AT4G35760.1 GeneID:829729 KEGG:ath:AT4G35760
            TAIR:At4g35760 HOGENOM:HOG000232446 InParanoid:Q8L540 OMA:YWCPHCH
            PhylomeDB:Q8L540 ProtClustDB:CLSN2689775 Genevestigator:Q8L540
            Uniprot:Q8L540
        Length = 376

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 103/160 (64%), Positives = 140/160 (87%)

Query:   122 AYGLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETE 181
             ++ LFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F TE
Sbjct:   205 SFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRTE 264

Query:   182 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG 241
             I++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA K+LNYVECFPDGY+KG
Sbjct:   265 ISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKELNYVECFPDGYKKG 324

Query:   242 TKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 281
             TKI KAC+DA IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct:   325 TKILKACADAAIEGFPTWIINDKVLSGEIELAELAEMTGF 364

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 65/177 (36%), Positives = 86/177 (48%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGL---FFISLKEFSVE- 136
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   YG+       L E ++  
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVVTALSAELGEGNLPF 157

Query:   137 EIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSL 193
              I K  G +  +  +  A  S S   +  LS+ ++ ++  +       S S F LS+
Sbjct:   158 GISKSNG-RFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSV 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       246    0.0010  113 3  11 22  0.40    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.62u 0.15s 19.77t   Elapsed:  00:00:01
  Total cpu time:  19.62u 0.15s 19.77t   Elapsed:  00:00:01
  Start:  Sat May 11 06:47:47 2013   End:  Sat May 11 06:47:48 2013

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