BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023015
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 121/257 (47%), Gaps = 47/257 (18%)
Query: 69 IGGVGFLETTYLSYLKLTNSDA-FCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAY---- 123
+ G+G L T YL+Y KLT A FC G S VL+S +A G+P +G+ +
Sbjct: 26 LAGLGSLLTAYLTYTKLTEQPAAFCTGDGGS-DLVLSSRWAEFLGIPTAAVGLLGFLGVL 84
Query: 124 -------GLFFI-------------SLKEFSVEEIQKVLGV--QLCIASLVVAALSTSYS 161
GL + ++ F + + ++ V Q C+ L
Sbjct: 85 ALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLG 144
Query: 162 SIQPLSSSVAEAN-------LPFFETEITT---------SSSPFALSLAKHLHAIGAKMY 205
+ L + L F T +TT SP A+ LA HL IG MY
Sbjct: 145 LVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMY 204
Query: 206 GAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 265
GA+WC HC +QK++FG+ A Q+ YVEC P+G GT A+ C++A I +PTW+ING+
Sbjct: 205 GAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQECTEAGITSYPTWIINGRT 261
Query: 266 LSGEQDLSDLAKASGFP 282
+G + L LA ASG+P
Sbjct: 262 YTGVRSLEALAVASGYP 278
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 187 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 246
SP A+ LA HL IG MYGA+WC HC +QK++FG+ A Q+ YVEC P+G GT A+
Sbjct: 1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQ 57
Query: 247 ACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP 282
C++A I +PTW+ING+ +G + L LA ASG+P
Sbjct: 58 ECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYP 93
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 174 NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLE-----QKQMFGSEAVKQL 228
NLP+ E + AL+ K H ++GA WC+ C + Q + K
Sbjct: 5 NLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHF 64
Query: 229 NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261
V+ + + ++++A D +G P V+
Sbjct: 65 EVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVV 97
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 37/148 (25%)
Query: 140 KVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHA 199
+++GV V ++ +Y I+ ++ F LS +H+
Sbjct: 303 RMIGVDQIHTGTAVGKMAGNYEEIKRIND--------------------FLLSKWEHIRP 342
Query: 200 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY-VECFPDGYRKGTKIAKACSDAKIEGFPT 258
+ G E ++FG + V Q V PDG R G K + DA IEG
Sbjct: 343 VFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGV-- 400
Query: 259 WVINGQVLSGEQDLSDLAKASGFPEMSQ 286
DL + AK+S PE+ +
Sbjct: 401 ------------DLDEKAKSS--PELKK 414
>pdb|2KCD|A Chain A, Solution Nmr Structure Of Ssp0047 From Staphylococcus
Saprophyticus. Northeast Structural Genomics Consortium
Target Syr6
Length = 120
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 148 IASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIG 201
I + L Y + PLS+ + + N + +T ++ PF L K L AIG
Sbjct: 28 IEEVADDILPDQYVRLGPLSNKILQTNTYYSDTLHKSNIYPFILYYQKQLIAIG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,889,441
Number of Sequences: 62578
Number of extensions: 251397
Number of successful extensions: 481
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)