Query 023015
Match_columns 288
No_of_seqs 220 out of 478
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 99.6 2.7E-15 5.8E-20 127.3 10.6 64 61-124 3-72 (142)
2 PRK14889 VKOR family protein; 99.6 1.3E-14 2.9E-19 123.9 8.7 63 62-124 8-73 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.5 2.2E-14 4.7E-19 119.9 6.6 62 63-124 2-68 (137)
4 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.3E-13 2.9E-18 107.3 8.6 70 202-279 22-101 (101)
5 cd02996 PDI_a_ERp44 PDIa famil 99.4 5.4E-13 1.2E-17 105.3 9.2 79 193-279 11-108 (108)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.2E-13 6.9E-18 110.8 8.1 72 200-279 31-113 (113)
7 cd02994 PDI_a_TMX PDIa family, 99.4 1.6E-12 3.4E-17 100.9 8.9 76 196-279 14-99 (101)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 1.7E-12 3.7E-17 101.1 8.8 71 201-279 22-104 (104)
9 PF00085 Thioredoxin: Thioredo 99.4 3.7E-12 7.9E-17 97.0 9.6 82 189-279 9-100 (103)
10 cd03002 PDI_a_MPD1_like PDI fa 99.4 3.1E-12 6.6E-17 99.8 8.1 73 201-279 21-108 (109)
11 KOG0190 Protein disulfide isom 99.3 9.4E-13 2E-17 131.8 5.5 73 202-282 46-131 (493)
12 cd02956 ybbN ybbN protein fami 99.3 1.3E-11 2.7E-16 94.7 9.4 70 202-279 16-95 (96)
13 TIGR00411 redox_disulf_1 small 99.3 7.9E-12 1.7E-16 92.9 7.9 72 201-280 2-79 (82)
14 cd03005 PDI_a_ERp46 PDIa famil 99.3 5.8E-12 1.3E-16 96.7 7.4 71 201-279 19-102 (102)
15 cd02999 PDI_a_ERp44_like PDIa 99.3 9.3E-12 2E-16 98.8 7.7 80 192-278 11-99 (100)
16 cd02993 PDI_a_APS_reductase PD 99.3 2E-11 4.3E-16 97.3 8.8 73 200-279 23-109 (109)
17 cd03001 PDI_a_P5 PDIa family, 99.3 2.8E-11 6E-16 93.1 8.7 71 201-279 21-102 (103)
18 cd03007 PDI_a_ERp29_N PDIa fam 99.2 1.6E-11 3.4E-16 102.2 7.1 77 202-281 22-114 (116)
19 cd02963 TRX_DnaJ TRX domain, D 99.2 3.4E-11 7.5E-16 96.7 8.1 72 201-280 27-109 (111)
20 PHA02125 thioredoxin-like prot 99.2 5.5E-11 1.2E-15 89.6 8.4 69 202-280 2-74 (75)
21 PTZ00443 Thioredoxin domain-co 99.2 1.6E-10 3.5E-15 105.4 12.3 71 201-279 55-135 (224)
22 PHA02278 thioredoxin-like prot 99.2 1.2E-10 2.7E-15 93.9 9.9 85 191-279 5-101 (103)
23 cd03000 PDI_a_TMX3 PDIa family 99.2 5.5E-11 1.2E-15 93.4 7.5 72 200-279 17-100 (104)
24 cd02998 PDI_a_ERp38 PDIa famil 99.2 6.6E-11 1.4E-15 90.6 7.4 72 201-279 21-105 (105)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 9.9E-11 2.1E-15 89.7 7.7 70 201-279 21-104 (104)
26 PTZ00102 disulphide isomerase; 99.2 2.1E-10 4.5E-15 110.8 11.7 74 200-281 51-136 (477)
27 cd02997 PDI_a_PDIR PDIa family 99.2 1.8E-10 4E-15 88.4 8.7 74 200-279 19-104 (104)
28 TIGR02196 GlrX_YruB Glutaredox 99.1 2.2E-10 4.9E-15 82.0 7.8 72 202-279 2-73 (74)
29 cd02947 TRX_family TRX family; 99.1 5.5E-10 1.2E-14 81.4 8.8 79 191-279 5-92 (93)
30 COG4243 Predicted membrane pro 99.1 4.6E-10 1E-14 97.9 9.5 62 63-124 12-79 (156)
31 PRK09381 trxA thioredoxin; Pro 99.1 6.8E-10 1.5E-14 87.3 9.7 71 201-279 24-104 (109)
32 cd02992 PDI_a_QSOX PDIa family 99.1 4.7E-10 1E-14 90.9 8.4 71 201-277 22-110 (114)
33 cd02948 TRX_NDPK TRX domain, T 99.1 1E-09 2.3E-14 86.6 9.4 78 192-279 9-99 (102)
34 TIGR01126 pdi_dom protein disu 99.1 5.8E-10 1.3E-14 84.9 7.3 70 202-279 17-98 (102)
35 cd02985 TRX_CDSP32 TRX family, 99.0 1.5E-09 3.2E-14 86.0 9.3 75 201-281 18-101 (103)
36 cd02961 PDI_a_family Protein D 99.0 1.4E-09 3.1E-14 81.1 8.0 80 192-279 7-101 (101)
37 TIGR01068 thioredoxin thioredo 99.0 2E-09 4.3E-14 81.4 8.4 71 202-280 18-98 (101)
38 TIGR02180 GRX_euk Glutaredoxin 99.0 1.2E-09 2.7E-14 81.4 6.8 73 202-277 1-76 (84)
39 cd02975 PfPDO_like_N Pyrococcu 99.0 1.8E-09 4E-14 87.5 8.3 79 193-279 15-106 (113)
40 PRK10996 thioredoxin 2; Provis 99.0 3E-09 6.6E-14 89.1 9.4 71 202-280 56-136 (139)
41 KOG4277 Uncharacterized conser 99.0 3.5E-10 7.6E-15 108.4 3.8 71 202-280 47-129 (468)
42 cd02950 TxlA TRX-like protein 99.0 2.2E-09 4.7E-14 90.5 8.1 76 199-280 21-107 (142)
43 cd02973 TRX_GRX_like Thioredox 99.0 1.2E-09 2.7E-14 79.2 5.7 62 201-268 2-66 (67)
44 cd02953 DsbDgamma DsbD gamma f 99.0 3.2E-09 6.9E-14 83.1 8.3 83 193-279 4-103 (104)
45 cd03065 PDI_b_Calsequestrin_N 99.0 1.6E-09 3.4E-14 90.3 6.9 80 192-279 18-115 (120)
46 TIGR01130 ER_PDI_fam protein d 99.0 2.8E-09 6.1E-14 101.4 9.5 72 202-281 22-107 (462)
47 KOG0190 Protein disulfide isom 99.0 1E-09 2.2E-14 110.2 6.7 73 202-284 388-474 (493)
48 cd02949 TRX_NTR TRX domain, no 98.9 4.9E-09 1.1E-13 81.5 8.8 70 202-279 17-96 (97)
49 PTZ00051 thioredoxin; Provisio 98.9 5E-09 1.1E-13 80.4 8.2 68 201-277 21-97 (98)
50 cd02984 TRX_PICOT TRX domain, 98.9 8.1E-09 1.8E-13 78.9 9.0 72 201-279 17-96 (97)
51 TIGR00424 APS_reduc 5'-adenyly 98.9 4.1E-09 8.9E-14 105.4 9.2 73 202-280 375-460 (463)
52 PLN02309 5'-adenylylsulfate re 98.9 5.7E-09 1.2E-13 104.2 9.3 75 199-280 366-454 (457)
53 PTZ00102 disulphide isomerase; 98.9 4E-09 8.6E-14 102.0 7.4 75 201-283 378-465 (477)
54 cd02951 SoxW SoxW family; SoxW 98.9 1.4E-08 3.1E-13 82.0 9.3 88 192-279 5-115 (125)
55 cd02965 HyaE HyaE family; HyaE 98.8 8.5E-09 1.8E-13 85.4 7.4 68 202-277 31-110 (111)
56 TIGR01295 PedC_BrcD bacterioci 98.8 1.4E-08 3.1E-13 83.9 8.8 80 200-279 25-120 (122)
57 PHA03050 glutaredoxin; Provisi 98.8 1.3E-08 2.8E-13 83.1 8.3 84 192-277 5-91 (108)
58 TIGR02189 GlrX-like_plant Glut 98.8 1.1E-08 2.3E-13 81.9 7.5 81 195-277 3-83 (99)
59 cd02962 TMX2 TMX2 family; comp 98.8 2.8E-08 6.1E-13 85.8 10.5 71 202-280 51-149 (152)
60 TIGR02187 GlrX_arch Glutaredox 98.8 1.4E-08 2.9E-13 90.5 8.7 82 190-279 125-212 (215)
61 TIGR00412 redox_disulf_2 small 98.8 1.3E-08 2.9E-13 77.2 7.4 69 202-280 3-76 (76)
62 cd02954 DIM1 Dim1 family; Dim1 98.8 1.2E-08 2.7E-13 84.7 7.4 55 202-264 18-79 (114)
63 KOG0191 Thioredoxin/protein di 98.8 7E-09 1.5E-13 99.7 6.5 82 191-280 40-131 (383)
64 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 2.5E-08 5.4E-13 78.5 7.3 79 191-277 4-88 (89)
65 PF13098 Thioredoxin_2: Thiore 98.8 1.4E-08 3.1E-13 79.6 5.8 81 199-279 6-112 (112)
66 TIGR02187 GlrX_arch Glutaredox 98.8 2.7E-08 5.8E-13 88.6 8.0 79 194-278 14-106 (215)
67 cd02957 Phd_like Phosducin (Ph 98.7 1.4E-08 3.1E-13 81.4 5.5 60 202-270 28-96 (113)
68 cd02989 Phd_like_TxnDC9 Phosdu 98.7 4E-08 8.7E-13 79.8 8.1 55 202-264 26-86 (113)
69 cd02976 NrdH NrdH-redoxin (Nrd 98.7 3.9E-08 8.4E-13 70.3 6.7 71 202-278 2-72 (73)
70 KOG1731 FAD-dependent sulfhydr 98.7 2.1E-08 4.5E-13 102.1 6.0 64 202-271 61-141 (606)
71 TIGR02181 GRX_bact Glutaredoxi 98.7 4.1E-08 8.9E-13 73.6 6.1 71 202-277 1-71 (79)
72 PRK00293 dipZ thiol:disulfide 98.7 2.1E-07 4.7E-12 94.8 13.1 78 199-280 475-567 (571)
73 cd03419 GRX_GRXh_1_2_like Glut 98.7 5.7E-08 1.2E-12 72.4 6.6 74 202-277 2-75 (82)
74 PRK11200 grxA glutaredoxin 1; 98.7 4.7E-08 1E-12 74.9 6.2 73 201-277 2-80 (85)
75 TIGR00365 monothiol glutaredox 98.6 1E-07 2.2E-12 76.0 7.6 82 191-277 3-89 (97)
76 cd02066 GRX_family Glutaredoxi 98.6 5.7E-08 1.2E-12 68.9 5.3 70 202-276 2-71 (72)
77 TIGR02200 GlrX_actino Glutared 98.6 1.3E-07 2.9E-12 69.1 7.0 70 202-278 2-74 (77)
78 TIGR02190 GlrX-dom Glutaredoxi 98.6 7.8E-08 1.7E-12 73.1 5.8 71 198-274 6-76 (79)
79 TIGR02183 GRXA Glutaredoxin, G 98.6 8.2E-08 1.8E-12 74.4 6.0 74 202-277 2-79 (86)
80 cd03418 GRX_GRXb_1_3_like Glut 98.6 1.1E-07 2.5E-12 69.9 6.3 71 202-277 2-73 (75)
81 cd03027 GRX_DEP Glutaredoxin ( 98.6 5.7E-08 1.2E-12 72.3 4.7 70 202-276 3-72 (73)
82 COG0695 GrxC Glutaredoxin and 98.6 2.3E-07 4.9E-12 71.8 7.3 75 201-279 2-77 (80)
83 COG3118 Thioredoxin domain-con 98.6 2E-07 4.3E-12 88.8 8.1 93 181-281 25-128 (304)
84 PF00462 Glutaredoxin: Glutare 98.5 1.9E-07 4E-12 67.0 5.8 58 202-265 1-59 (60)
85 TIGR01130 ER_PDI_fam protein d 98.5 1.7E-07 3.8E-12 89.2 6.9 73 202-284 368-455 (462)
86 cd03028 GRX_PICOT_like Glutare 98.5 2E-07 4.4E-12 72.8 5.8 78 195-277 3-85 (90)
87 KOG0191 Thioredoxin/protein di 98.5 1.7E-07 3.6E-12 90.2 5.8 80 194-281 158-250 (383)
88 cd03029 GRX_hybridPRX5 Glutare 98.4 5.2E-07 1.1E-11 66.8 6.0 68 201-274 2-69 (72)
89 PRK10638 glutaredoxin 3; Provi 98.4 7.9E-07 1.7E-11 67.9 7.1 72 201-277 3-74 (83)
90 KOG0907 Thioredoxin [Posttrans 98.4 7.5E-07 1.6E-11 72.8 7.2 72 199-279 22-102 (106)
91 TIGR02194 GlrX_NrdH Glutaredox 98.4 9.1E-07 2E-11 65.9 6.9 71 202-278 1-71 (72)
92 KOG0912 Thiol-disulfide isomer 98.4 3.4E-07 7.4E-12 88.0 4.3 74 202-283 17-106 (375)
93 cd02959 ERp19 Endoplasmic reti 98.4 1.2E-06 2.5E-11 71.8 6.9 72 188-264 9-88 (117)
94 PLN00410 U5 snRNP protein, DIM 98.3 3.2E-06 7E-11 72.8 9.4 70 202-279 27-116 (142)
95 KOG1752 Glutaredoxin and relat 98.3 2.5E-06 5.4E-11 70.0 8.1 83 193-277 7-89 (104)
96 PRK03147 thiol-disulfide oxido 98.3 5.5E-06 1.2E-10 69.5 9.7 89 191-279 54-168 (173)
97 cd02952 TRP14_like Human TRX-r 98.3 3.2E-06 6.9E-11 70.6 8.1 77 202-278 25-117 (119)
98 KOG0910 Thioredoxin-like prote 98.3 1.4E-06 3E-11 76.0 6.0 86 186-279 49-144 (150)
99 cd03010 TlpA_like_DsbE TlpA-li 98.3 3E-06 6.5E-11 68.2 7.3 85 191-275 18-126 (127)
100 cd02987 Phd_like_Phd Phosducin 98.3 3.9E-06 8.5E-11 73.6 8.5 69 202-279 87-171 (175)
101 PRK10329 glutaredoxin-like pro 98.2 3.7E-06 8E-11 65.1 7.1 72 201-279 2-73 (81)
102 cd02982 PDI_b'_family Protein 98.2 3.9E-06 8.4E-11 64.7 6.5 72 200-279 14-99 (103)
103 TIGR02740 TraF-like TraF-like 98.2 6.8E-06 1.5E-10 76.8 8.9 89 191-279 159-260 (271)
104 PRK15412 thiol:disulfide inter 98.2 3.3E-05 7.1E-10 67.3 12.6 79 201-279 71-172 (185)
105 TIGR00385 dsbE periplasmic pro 98.2 1.8E-05 3.8E-10 68.1 10.5 79 201-279 66-167 (173)
106 cd02955 SSP411 TRX domain, SSP 98.2 7.5E-06 1.6E-10 68.5 7.7 79 187-265 4-93 (124)
107 PRK10824 glutaredoxin-4; Provi 98.2 6.7E-06 1.5E-10 68.5 7.3 83 190-277 5-92 (115)
108 PF13192 Thioredoxin_3: Thiore 98.1 8.2E-06 1.8E-10 61.8 7.1 70 202-279 3-75 (76)
109 TIGR02738 TrbB type-F conjugat 98.1 1.5E-05 3.3E-10 68.8 8.8 82 198-279 50-149 (153)
110 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 9.1E-06 2E-10 64.6 6.5 86 192-278 14-121 (123)
111 smart00594 UAS UAS domain. 98.1 2.5E-05 5.3E-10 64.1 8.7 97 179-279 8-121 (122)
112 cd02988 Phd_like_VIAF Phosduci 98.0 1.5E-05 3.3E-10 71.1 7.4 69 202-279 106-188 (192)
113 cd02986 DLP Dim1 family, Dim1- 98.0 1.9E-05 4.1E-10 66.0 7.4 55 202-264 18-79 (114)
114 PRK14018 trifunctional thiored 98.0 3.5E-05 7.7E-10 78.5 10.0 80 201-280 59-170 (521)
115 PTZ00062 glutaredoxin; Provisi 98.0 2.8E-05 6.1E-10 70.4 8.2 84 188-277 101-190 (204)
116 cd01659 TRX_superfamily Thiore 97.9 2.3E-05 5.1E-10 51.3 5.1 57 202-263 1-61 (69)
117 cd03023 DsbA_Com1_like DsbA fa 97.9 7.3E-05 1.6E-09 60.5 8.7 34 246-279 120-153 (154)
118 PRK12759 bifunctional gluaredo 97.9 2.3E-05 5E-10 77.1 6.8 71 201-274 3-79 (410)
119 cd02958 UAS UAS family; UAS is 97.9 6E-05 1.3E-09 60.4 8.0 88 188-279 7-107 (114)
120 TIGR03143 AhpF_homolog putativ 97.9 4.8E-05 1E-09 76.9 9.0 85 188-280 465-555 (555)
121 cd02966 TlpA_like_family TlpA- 97.9 3.4E-05 7.3E-10 58.0 5.9 74 191-264 12-109 (116)
122 cd03009 TryX_like_TryX_NRX Try 97.9 2.6E-05 5.7E-10 63.2 5.5 75 191-265 11-112 (131)
123 PF13899 Thioredoxin_7: Thiore 97.8 2.7E-05 5.8E-10 59.2 4.9 66 189-261 8-79 (82)
124 PTZ00062 glutaredoxin; Provisi 97.8 7.5E-05 1.6E-09 67.7 8.2 73 191-278 7-89 (204)
125 cd02964 TryX_like_family Trypa 97.7 0.00011 2.4E-09 60.0 6.3 77 189-265 8-112 (132)
126 PRK13728 conjugal transfer pro 97.6 0.00022 4.7E-09 63.8 8.3 77 202-278 73-166 (181)
127 COG4232 Thiol:disulfide interc 97.6 0.00045 9.7E-09 71.1 11.3 88 188-279 464-564 (569)
128 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 8.7E-05 1.9E-09 65.0 5.2 37 243-279 160-197 (197)
129 cd02967 mauD Methylamine utili 97.6 0.00011 2.3E-09 57.6 4.5 67 191-260 13-83 (114)
130 PRK15317 alkyl hydroperoxide r 97.5 0.00029 6.2E-09 70.5 8.5 88 187-282 104-197 (517)
131 KOG0908 Thioredoxin-like prote 97.5 9.9E-05 2.2E-09 69.6 4.7 73 189-269 12-93 (288)
132 cd02960 AGR Anterior Gradient 97.5 0.00049 1.1E-08 58.6 8.3 36 188-223 13-49 (130)
133 cd02972 DsbA_family DsbA famil 97.3 0.00073 1.6E-08 49.8 6.5 67 203-269 2-97 (98)
134 KOG0913 Thiol-disulfide isomer 97.3 5.9E-05 1.3E-09 70.2 0.7 73 202-282 43-125 (248)
135 PF13905 Thioredoxin_8: Thiore 97.3 0.00049 1.1E-08 52.4 5.6 63 202-264 5-94 (95)
136 cd03031 GRX_GRX_like Glutaredo 97.3 0.0006 1.3E-08 59.0 5.9 71 202-277 2-82 (147)
137 TIGR02661 MauD methylamine deh 97.2 0.0017 3.7E-08 57.0 8.8 78 202-279 78-175 (189)
138 TIGR03140 AhpF alkyl hydropero 97.1 0.0016 3.4E-08 65.3 8.2 86 188-281 106-197 (515)
139 PLN02919 haloacid dehalogenase 97.1 0.0015 3.3E-08 71.4 8.1 80 200-279 422-532 (1057)
140 COG0526 TrxA Thiol-disulfide i 97.0 0.0026 5.5E-08 46.4 6.0 71 205-280 39-121 (127)
141 PF08534 Redoxin: Redoxin; In 96.9 0.0026 5.7E-08 52.1 6.5 89 189-277 19-144 (146)
142 PRK10877 protein disulfide iso 96.9 0.0049 1.1E-07 56.4 8.8 38 243-280 190-228 (232)
143 PF13728 TraF: F plasmid trans 96.8 0.0074 1.6E-07 54.8 9.0 87 190-278 112-213 (215)
144 cd03008 TryX_like_RdCVF Trypar 96.6 0.0059 1.3E-07 52.6 6.3 24 199-222 26-49 (146)
145 cd03012 TlpA_like_DipZ_like Tl 96.6 0.0071 1.5E-07 48.9 6.4 32 191-222 16-47 (126)
146 KOG2501 Thioredoxin, nucleored 96.3 0.0039 8.5E-08 55.0 3.6 66 199-264 34-127 (157)
147 cd00340 GSH_Peroxidase Glutath 96.2 0.016 3.4E-07 48.7 6.4 31 191-222 15-45 (152)
148 PF06110 DUF953: Eukaryotic pr 95.9 0.004 8.6E-08 52.4 1.7 63 206-269 34-105 (119)
149 PF13462 Thioredoxin_4: Thiore 95.9 0.01 2.2E-07 48.8 4.0 36 244-279 125-160 (162)
150 PF14595 Thioredoxin_9: Thiore 95.8 0.0078 1.7E-07 50.7 3.0 81 186-271 29-118 (129)
151 PRK11509 hydrogenase-1 operon 95.6 0.023 4.9E-07 48.7 5.3 64 209-280 47-121 (132)
152 cd03060 GST_N_Omega_like GST_N 95.6 0.047 1E-06 39.9 6.2 58 203-266 2-60 (71)
153 cd00570 GST_N_family Glutathio 95.5 0.052 1.1E-06 37.2 5.9 61 203-268 2-62 (71)
154 PTZ00056 glutathione peroxidas 95.5 0.046 1E-06 48.8 6.9 32 191-222 32-63 (199)
155 TIGR01626 ytfJ_HI0045 conserve 95.0 0.066 1.4E-06 48.0 6.4 87 193-279 54-176 (184)
156 COG2143 Thioredoxin-related pr 94.9 0.052 1.1E-06 48.6 5.4 81 202-282 46-148 (182)
157 cd02969 PRX_like1 Peroxiredoxi 94.8 0.098 2.1E-06 44.4 6.8 69 199-267 26-125 (171)
158 cd03022 DsbA_HCCA_Iso DsbA fam 94.8 0.039 8.4E-07 46.9 4.3 36 245-280 157-192 (192)
159 PF00578 AhpC-TSA: AhpC/TSA fa 94.8 0.049 1.1E-06 42.8 4.6 32 191-222 18-50 (124)
160 cd03017 PRX_BCP Peroxiredoxin 94.8 0.088 1.9E-06 42.4 6.1 88 191-278 16-138 (140)
161 PRK13703 conjugal pilus assemb 94.7 0.18 4E-06 47.3 8.8 81 198-278 143-236 (248)
162 cd02977 ArsC_family Arsenate R 94.5 0.078 1.7E-06 42.1 5.1 49 202-252 1-49 (105)
163 TIGR02540 gpx7 putative glutat 94.5 0.22 4.7E-06 41.7 7.9 30 191-220 15-44 (153)
164 cd03035 ArsC_Yffb Arsenate Red 94.4 0.06 1.3E-06 43.7 4.2 49 202-252 1-49 (105)
165 cd03036 ArsC_like Arsenate Red 94.3 0.082 1.8E-06 43.0 4.9 50 202-253 1-50 (111)
166 PF03190 Thioredox_DsbH: Prote 94.3 0.077 1.7E-06 47.0 5.0 74 187-264 26-114 (163)
167 cd03037 GST_N_GRX2 GST_N famil 94.3 0.12 2.7E-06 37.5 5.3 61 202-269 1-62 (71)
168 TIGR02739 TraF type-F conjugat 94.2 0.25 5.5E-06 46.5 8.6 87 192-278 144-243 (256)
169 cd03051 GST_N_GTT2_like GST_N 94.0 0.16 3.6E-06 36.2 5.5 61 202-265 1-62 (74)
170 PLN02399 phospholipid hydroper 93.9 0.32 7E-06 45.1 8.6 33 190-222 91-123 (236)
171 PF01323 DSBA: DSBA-like thior 93.9 0.074 1.6E-06 45.1 4.1 35 245-279 157-192 (193)
172 cd03045 GST_N_Delta_Epsilon GS 93.9 0.24 5.3E-06 35.8 6.3 61 202-265 1-61 (74)
173 cd02991 UAS_ETEA UAS family, E 93.9 0.32 6.9E-06 40.2 7.7 84 189-279 8-109 (116)
174 TIGR01617 arsC_related transcr 93.8 0.094 2E-06 42.8 4.4 64 202-268 1-65 (117)
175 KOG0914 Thioredoxin-like prote 93.3 0.49 1.1E-05 44.5 8.6 67 190-264 136-216 (265)
176 PRK11657 dsbG disulfide isomer 93.2 0.19 4.1E-06 46.6 5.7 37 245-281 209-250 (251)
177 cd02970 PRX_like2 Peroxiredoxi 93.1 0.18 3.8E-06 40.8 4.9 64 191-258 15-84 (149)
178 cd03040 GST_N_mPGES2 GST_N fam 93.1 0.41 9E-06 35.2 6.4 53 202-262 2-54 (77)
179 PF05768 DUF836: Glutaredoxin- 92.9 0.8 1.7E-05 35.0 8.0 69 202-279 2-80 (81)
180 PLN02412 probable glutathione 92.6 0.48 1E-05 40.8 7.2 33 190-222 21-53 (167)
181 cd03059 GST_N_SspA GST_N famil 92.3 0.72 1.6E-05 33.2 6.7 59 202-266 1-59 (73)
182 KOG3425 Uncharacterized conser 92.2 0.1 2.3E-06 44.6 2.4 54 208-261 43-101 (128)
183 PRK01655 spxA transcriptional 92.1 0.25 5.4E-06 41.5 4.6 49 202-252 2-50 (131)
184 cd03015 PRX_Typ2cys Peroxiredo 91.8 0.82 1.8E-05 39.1 7.6 33 190-222 21-54 (173)
185 PF13417 GST_N_3: Glutathione 91.7 0.8 1.7E-05 33.9 6.5 59 204-268 1-59 (75)
186 cd03014 PRX_Atyp2cys Peroxired 91.7 0.2 4.4E-06 40.8 3.5 34 190-223 18-52 (143)
187 PRK00611 putative disulfide ox 91.4 0.95 2.1E-05 39.0 7.4 53 68-126 70-124 (135)
188 cd03024 DsbA_FrnE DsbA family, 90.9 0.35 7.5E-06 41.5 4.4 35 245-279 165-200 (201)
189 PTZ00256 glutathione peroxidas 90.8 1.3 2.8E-05 38.6 7.9 32 190-222 32-65 (183)
190 cd03032 ArsC_Spx Arsenate Redu 90.5 0.55 1.2E-05 38.2 5.0 49 202-252 2-50 (115)
191 PRK12559 transcriptional regul 90.4 0.51 1.1E-05 39.8 4.9 48 202-251 2-49 (131)
192 COG4545 Glutaredoxin-related p 90.1 0.53 1.1E-05 37.6 4.3 65 203-268 5-78 (85)
193 cd03018 PRX_AhpE_like Peroxire 90.0 0.51 1.1E-05 38.5 4.5 33 190-222 19-53 (149)
194 cd03041 GST_N_2GST_N GST_N fam 89.1 1.2 2.6E-05 33.1 5.6 56 202-262 2-57 (77)
195 PRK00522 tpx lipid hydroperoxi 89.0 0.41 8.9E-06 41.1 3.3 34 190-223 36-70 (167)
196 cd03019 DsbA_DsbA DsbA family, 88.7 0.48 1E-05 39.6 3.5 29 245-273 133-161 (178)
197 COG1651 DsbG Protein-disulfide 88.7 0.64 1.4E-05 41.6 4.4 37 244-280 204-240 (244)
198 cd03056 GST_N_4 GST_N family, 88.1 2.4 5.3E-05 30.2 6.4 60 203-266 2-62 (73)
199 cd03055 GST_N_Omega GST_N fami 88.1 2 4.4E-05 33.0 6.4 58 202-265 19-77 (89)
200 PRK03113 putative disulfide ox 86.5 2.8 6E-05 36.2 6.9 59 64-127 67-129 (139)
201 PRK13344 spxA transcriptional 86.1 1.5 3.2E-05 37.1 5.0 49 202-252 2-50 (132)
202 PRK10954 periplasmic protein d 85.2 0.82 1.8E-05 40.6 3.1 36 246-281 158-202 (207)
203 PRK09437 bcp thioredoxin-depen 85.2 1.2 2.6E-05 37.0 3.9 32 191-222 23-55 (154)
204 cd03033 ArsC_15kD Arsenate Red 84.4 1.7 3.6E-05 35.9 4.4 51 201-253 1-51 (113)
205 cd02968 SCO SCO (an acronym fo 82.7 2.2 4.8E-05 34.3 4.4 31 192-222 16-47 (142)
206 cd03016 PRX_1cys Peroxiredoxin 81.9 4.6 0.0001 35.8 6.5 32 191-222 17-50 (203)
207 PRK10382 alkyl hydroperoxide r 81.4 4.1 8.9E-05 36.3 6.0 32 191-222 24-56 (187)
208 PTZ00253 tryparedoxin peroxida 81.3 3.9 8.5E-05 36.1 5.8 90 190-279 28-160 (199)
209 PRK13190 putative peroxiredoxi 80.7 4.4 9.6E-05 36.1 6.0 90 190-279 19-150 (202)
210 PRK10606 btuE putative glutath 78.6 3.9 8.5E-05 36.4 5.0 73 190-264 17-102 (183)
211 cd02971 PRX_family Peroxiredox 78.4 3.7 7.9E-05 32.9 4.3 24 199-222 23-47 (140)
212 PRK15000 peroxidase; Provision 77.5 6.8 0.00015 35.0 6.2 90 190-279 25-158 (200)
213 cd03030 GRX_SH3BGR Glutaredoxi 76.9 5.5 0.00012 31.8 4.9 62 211-277 17-82 (92)
214 TIGR01598 holin_phiLC3 holin, 73.9 15 0.00033 29.1 6.5 39 127-166 27-65 (78)
215 PRK01749 disulfide bond format 69.9 23 0.00049 31.4 7.5 54 69-126 81-154 (176)
216 cd03019 DsbA_DsbA DsbA family, 69.6 4.2 9E-05 33.9 2.7 25 199-223 16-40 (178)
217 cd03021 DsbA_GSTK DsbA family, 67.7 7.3 0.00016 34.4 4.0 35 246-280 170-209 (209)
218 TIGR03137 AhpC peroxiredoxin. 67.7 3.6 7.9E-05 36.0 2.0 32 191-222 24-56 (187)
219 PF13462 Thioredoxin_4: Thiore 66.9 6.4 0.00014 32.2 3.2 23 200-222 14-36 (162)
220 TIGR00014 arsC arsenate reduct 65.3 15 0.00032 30.0 5.1 50 202-253 1-50 (114)
221 PRK02110 disulfide bond format 65.2 26 0.00057 30.8 6.9 58 67-129 78-156 (169)
222 COG2761 FrnE Predicted dithiol 64.9 8.1 0.00017 36.1 3.8 33 246-278 175-208 (225)
223 cd03058 GST_N_Tau GST_N family 64.6 26 0.00057 25.3 5.8 58 202-266 1-60 (74)
224 KOG0911 Glutaredoxin-related p 60.9 7.6 0.00017 36.4 2.9 65 202-272 21-92 (227)
225 PF14673 DUF4459: Domain of un 60.0 3.3 7.1E-05 35.5 0.3 18 202-224 93-110 (159)
226 PF13743 Thioredoxin_5: Thiore 59.7 6.5 0.00014 34.4 2.1 32 245-276 137-175 (176)
227 PRK04388 disulfide bond format 56.5 52 0.0011 28.9 7.2 54 68-125 78-153 (172)
228 COG3019 Predicted metal-bindin 55.5 40 0.00087 29.8 6.2 77 201-282 27-103 (149)
229 PRK10954 periplasmic protein d 53.2 7 0.00015 34.7 1.3 22 199-220 38-59 (207)
230 cd03053 GST_N_Phi GST_N family 52.4 65 0.0014 23.1 6.2 62 202-266 2-63 (76)
231 cd03034 ArsC_ArsC Arsenate Red 52.0 33 0.00072 27.8 5.0 49 202-252 1-49 (112)
232 PF02114 Phosducin: Phosducin; 51.7 28 0.0006 33.0 5.0 75 202-283 150-238 (265)
233 PF05279 Asp-B-Hydro_N: Aspart 51.5 16 0.00034 34.6 3.3 30 56-85 6-35 (243)
234 PRK10853 putative reductase; P 51.2 25 0.00054 29.2 4.1 51 202-254 2-52 (118)
235 cd03054 GST_N_Metaxin GST_N fa 49.6 53 0.0011 23.6 5.3 50 207-269 13-62 (72)
236 PF13848 Thioredoxin_6: Thiore 46.8 1.7E+02 0.0036 24.2 8.8 63 209-279 106-182 (184)
237 PF06953 ArsD: Arsenical resis 46.2 29 0.00063 29.5 3.8 43 244-286 61-105 (123)
238 COG3529 Predicted nucleic-acid 44.7 13 0.00027 28.6 1.3 29 208-239 11-41 (66)
239 COG3531 Predicted protein-disu 44.7 15 0.00033 34.1 2.1 22 245-266 164-187 (212)
240 PRK09481 sspA stringent starva 44.4 82 0.0018 27.5 6.6 58 202-265 11-68 (211)
241 cd03052 GST_N_GDAP1 GST_N fami 43.8 1.2E+02 0.0025 22.4 6.4 61 202-265 1-61 (73)
242 PRK01103 formamidopyrimidine/5 43.2 4.3 9.3E-05 38.1 -1.8 11 206-216 264-274 (274)
243 PF04531 Phage_holin_1: Bacter 41.7 88 0.0019 24.7 5.7 23 144-166 46-68 (84)
244 PF11023 DUF2614: Protein of u 41.4 32 0.00069 29.2 3.3 37 126-162 23-59 (114)
245 COG0266 Nei Formamidopyrimidin 40.3 5.8 0.00013 38.0 -1.4 10 206-215 264-273 (273)
246 cd03049 GST_N_3 GST_N family, 39.6 1.2E+02 0.0025 21.7 5.8 59 202-265 1-61 (73)
247 PF13848 Thioredoxin_6: Thiore 38.8 89 0.0019 25.9 5.7 54 217-280 9-72 (184)
248 TIGR01616 nitro_assoc nitrogen 38.1 56 0.0012 27.5 4.3 22 202-223 3-24 (126)
249 cd03042 GST_N_Zeta GST_N famil 37.9 1.4E+02 0.0031 20.9 6.3 60 203-266 2-62 (73)
250 PF09925 DUF2157: Predicted me 37.3 76 0.0016 26.8 5.1 47 114-160 35-81 (145)
251 TIGR03143 AhpF_homolog putativ 37.2 1.6E+02 0.0035 30.2 8.3 57 197-261 364-425 (555)
252 KOG2640 Thioredoxin [Function 37.1 18 0.00038 35.6 1.3 34 245-278 120-157 (319)
253 PF07912 ERp29_N: ERp29, N-ter 36.2 1.7E+02 0.0036 25.4 6.9 80 198-280 22-116 (126)
254 PRK13599 putative peroxiredoxi 34.1 30 0.00066 31.4 2.3 20 203-222 34-53 (215)
255 PRK14811 formamidopyrimidine-D 33.9 5.4 0.00012 37.5 -2.7 14 206-219 254-267 (269)
256 PF01216 Calsequestrin: Calseq 33.8 1.2E+02 0.0026 30.6 6.4 70 202-279 55-140 (383)
257 PRK10026 arsenate reductase; P 32.6 91 0.002 27.0 4.9 51 201-253 3-53 (141)
258 COG1393 ArsC Arsenate reductas 31.4 1E+02 0.0023 25.6 4.9 50 202-253 3-52 (117)
259 cd03038 GST_N_etherase_LigE GS 30.3 71 0.0015 23.7 3.4 55 208-266 14-69 (84)
260 cd03061 GST_N_CLIC GST_N famil 29.4 1.5E+02 0.0032 23.7 5.2 56 207-268 19-74 (91)
261 cd03025 DsbA_FrnE_like DsbA fa 28.2 41 0.00088 28.5 2.0 17 245-261 159-175 (193)
262 PRK14810 formamidopyrimidine-D 28.2 13 0.00027 35.1 -1.3 11 205-215 262-272 (272)
263 cd03013 PRX5_like Peroxiredoxi 27.8 61 0.0013 27.5 3.0 63 190-257 20-93 (155)
264 PRK13945 formamidopyrimidine-D 27.3 14 0.00031 34.8 -1.1 10 206-215 273-282 (282)
265 PRK13191 putative peroxiredoxi 27.2 47 0.001 30.1 2.3 19 204-222 40-58 (215)
266 PF04134 DUF393: Protein of un 27.0 1.2E+02 0.0025 23.9 4.3 69 207-281 4-79 (114)
267 PF13490 zf-HC2: Putative zinc 26.6 53 0.0012 21.1 1.9 20 186-215 17-36 (36)
268 TIGR02182 GRXB Glutaredoxin, G 26.6 1.7E+02 0.0038 25.6 5.7 58 203-267 1-59 (209)
269 PRK13189 peroxiredoxin; Provis 26.4 48 0.001 30.1 2.2 32 191-222 27-60 (222)
270 COG3634 AhpF Alkyl hydroperoxi 26.4 1.5E+02 0.0034 30.4 5.9 80 192-279 106-194 (520)
271 PF06053 DUF929: Domain of unk 26.0 29 0.00062 32.9 0.7 19 199-217 59-77 (249)
272 cd02983 P5_C P5 family, C-term 25.8 2.1E+02 0.0045 23.9 5.8 36 245-280 69-112 (130)
273 cd03039 GST_N_Sigma_like GST_N 25.4 1.9E+02 0.0042 20.5 4.9 59 203-266 2-60 (72)
274 TIGR00577 fpg formamidopyrimid 25.2 16 0.00034 34.4 -1.2 9 206-214 264-272 (272)
275 PF11287 DUF3088: Protein of u 24.7 1.2E+02 0.0026 25.7 4.1 51 200-261 18-74 (112)
276 PHA03049 IMV membrane protein; 24.7 1.9E+02 0.004 22.6 4.7 56 138-201 2-57 (68)
277 cd02981 PDI_b_family Protein D 24.7 3E+02 0.0065 20.5 8.0 68 199-279 18-94 (97)
278 PF06168 DUF981: Protein of un 22.7 2.1E+02 0.0047 26.1 5.6 55 104-161 66-120 (191)
279 PF05101 VirB3: Type IV secret 22.6 2.8E+02 0.006 21.2 5.5 29 107-135 16-44 (89)
280 PF09526 DUF2387: Probable met 22.6 9.8 0.00021 29.5 -2.6 27 209-238 10-38 (71)
281 PRK15035 cytochrome bd-II oxid 22.4 1.8E+02 0.0039 30.5 5.7 49 108-156 89-141 (514)
282 PF07449 HyaE: Hydrogenase-1 e 22.2 1.3E+02 0.0028 25.1 3.8 31 244-274 71-106 (107)
283 PRK10445 endonuclease VIII; Pr 22.2 21 0.00046 33.4 -1.0 10 206-215 254-263 (263)
284 COG3917 NahD 2-hydroxychromene 21.8 1E+02 0.0023 28.5 3.4 34 245-278 166-199 (203)
285 COG5494 Predicted thioredoxin/ 21.3 4.1E+02 0.0089 25.4 7.2 77 197-281 8-86 (265)
286 cd05855 Ig_TrkB_d5 Fifth domai 21.1 47 0.001 25.5 0.9 22 248-269 2-27 (79)
287 PRK15097 cytochrome d terminal 20.9 2E+02 0.0043 30.3 5.6 47 109-155 90-140 (522)
288 PF11976 Rad60-SLD: Ubiquitin- 20.8 1.6E+02 0.0034 21.3 3.7 31 245-275 28-60 (72)
289 PF10939 DUF2631: Protein of u 20.5 1.9E+02 0.0041 22.4 4.1 17 46-62 10-26 (65)
290 COG2962 RarD Predicted permeas 20.3 1.8E+02 0.0038 28.5 4.8 48 113-161 235-288 (293)
291 cd03080 GST_N_Metaxin_like GST 20.1 3.5E+02 0.0075 19.5 6.8 48 209-269 16-63 (75)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.62 E-value=2.7e-15 Score=127.31 Aligned_cols=64 Identities=42% Similarity=0.643 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhhhcCC-----cccCCCC-CcCccccccchhhhhcCCchhHHHHHHHH
Q 023015 61 SPYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (288)
Q Consensus 61 ~~~~~i~~la~iGl~~t~yLT~~k~~~~-----~~~C~i~-~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~ 124 (288)
..+.++++++++|+++|+||+++|++.. ++.|++| ..||++|++||||++||+||+++|+++|+
T Consensus 3 ~~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~ 72 (142)
T smart00756 3 WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYL 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHH
Confidence 3456778999999999999999998643 3899998 68999999999999999999999999998
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=123.90 Aligned_cols=63 Identities=27% Similarity=0.471 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh--hcCCcccCCCC-CcCccccccchhhhhcCCchhHHHHHHHH
Q 023015 62 PYGWCAGIGGVGFLETTYLSYLK--LTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (288)
Q Consensus 62 ~~~~i~~la~iGl~~t~yLT~~k--~~~~~~~C~i~-~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~ 124 (288)
+..++++++++|+++|.|++++| .++++++|++| ..||++|++||||++||+||+++|+++|.
T Consensus 8 ~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~ 73 (143)
T PRK14889 8 ILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFS 73 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHH
Confidence 44567799999999999999987 34678999998 57999999999999999999999999998
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.51 E-value=2.2e-14 Score=119.86 Aligned_cols=62 Identities=37% Similarity=0.720 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCc----ccCCCC-CcCccccccchhhhhcCCchhHHHHHHHH
Q 023015 63 YGWCAGIGGVGFLETTYLSYLKLTNSD----AFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (288)
Q Consensus 63 ~~~i~~la~iGl~~t~yLT~~k~~~~~----~~C~i~-~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~ 124 (288)
+.++.+++++|++++.||++++++... +.|+++ ..||++|++||||++||+|++++|+++|+
T Consensus 2 ~~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~ 68 (137)
T PF07884_consen 2 RILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFA 68 (137)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHH
Confidence 457789999999999999999997554 999987 68999999999999999999999999998
No 4
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.48 E-value=1.3e-13 Score=107.32 Aligned_cols=70 Identities=20% Similarity=0.400 Sum_probs=58.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
+++|+|+||+||+++++.|.+.|.+ .+..|||+.+ .++|++++|++|||+.+ +|+ +|.|.++
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~ 93 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRS 93 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCCCC
Confidence 5688899999999999999885422 2568999753 58899999999999877 775 6999999
Q ss_pred HHHHHHHh
Q 023015 272 LSDLAKAS 279 (288)
Q Consensus 272 Le~La~~s 279 (288)
.++|.+++
T Consensus 94 ~~~l~~f~ 101 (101)
T cd03003 94 KESLVKFA 101 (101)
T ss_pred HHHHHhhC
Confidence 99998874
No 5
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.44 E-value=5.4e-13 Score=105.27 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=61.2
Q ss_pred HHhhhcccC--eEEEecCCCHHHHHHHHHHhHHhhc-----------cCeeEECCCCCCCCchhhHHhhhhcCCCcccee
Q 023015 193 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK-----------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 259 (288)
Q Consensus 193 LAkhL~~~g--akmYGApWCpHC~~qK~lFgkeA~~-----------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw 259 (288)
+.+++++.. +++|+|+||+||+++++.|.+.+.+ .+.+|||+.+ .++|++++|++|||+
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl 82 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTL 82 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEE
Confidence 334444433 5578899999999999999764321 2458999764 489999999999998
Q ss_pred EE--CCE----EecCCCCHHHHHHHh
Q 023015 260 VI--NGQ----VLSGEQDLSDLAKAS 279 (288)
Q Consensus 260 ~I--nGe----~y~G~rsLe~La~~s 279 (288)
++ ||+ +|.|.++.++|.+|.
T Consensus 83 ~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 87 775 589999999998873
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.44 E-value=3.2e-13 Score=110.78 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=58.6
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhh-hcCCCccceeEE--CCE---EecC
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ---VLSG 268 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~-~~gI~GyPTw~I--nGe---~y~G 268 (288)
.-+++|+|+||+||+.+++.|.+.|.+ .+..|||+.+ .++|+ +++|++|||+++ ||+ +|.|
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G 102 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEYKG 102 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEEeC
Confidence 336688899999999999999986522 2468999754 47894 899999999887 776 7999
Q ss_pred CCCHHHHHHHh
Q 023015 269 EQDLSDLAKAS 279 (288)
Q Consensus 269 ~rsLe~La~~s 279 (288)
.++.++|..|.
T Consensus 103 ~~~~~~i~~~~ 113 (113)
T cd03006 103 PMRAPYMEKFV 113 (113)
T ss_pred CCCHHHHHhhC
Confidence 99999998763
No 7
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.39 E-value=1.6e-12 Score=100.85 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=61.1
Q ss_pred hhcccCeEEEecCCCHHHHHHHHHHhHHhh--c----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--E
Q 023015 196 HLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 265 (288)
Q Consensus 196 hL~~~gakmYGApWCpHC~~qK~lFgkeA~--~----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~ 265 (288)
.++..-+++|+|+||+||+++++.|.+.+. + .+..|||+.+ ..+|++++|++|||.++ +|+ +
T Consensus 14 ~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~ 85 (101)
T cd02994 14 VLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGVFRR 85 (101)
T ss_pred HhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCCEEE
Confidence 344455788889999999999999987542 1 2468898753 47899999999999887 776 6
Q ss_pred ecCCCCHHHHHHHh
Q 023015 266 LSGEQDLSDLAKAS 279 (288)
Q Consensus 266 y~G~rsLe~La~~s 279 (288)
|.|.++.++|.++.
T Consensus 86 ~~G~~~~~~l~~~i 99 (101)
T cd02994 86 YQGPRDKEDLISFI 99 (101)
T ss_pred ecCCCCHHHHHHHH
Confidence 99999999998875
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.39 E-value=1.7e-12 Score=101.13 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=57.8
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC-E---EecCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSGE 269 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG-e---~y~G~ 269 (288)
=+++|+|+||+||+++++.|.+.+.+ .+..|||+.+ .++|++++|++|||+++ +| + +|.|.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSYNGW 93 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEccCC
Confidence 36688899999999999999885432 2568999753 58999999999999887 55 4 79999
Q ss_pred CC-HHHHHHHh
Q 023015 270 QD-LSDLAKAS 279 (288)
Q Consensus 270 rs-Le~La~~s 279 (288)
++ .++|.+|.
T Consensus 94 ~~~~~~l~~~i 104 (104)
T cd03004 94 HRDADSILEFI 104 (104)
T ss_pred CCCHHHHHhhC
Confidence 87 99998863
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.37 E-value=3.7e-12 Score=97.02 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=63.5
Q ss_pred HHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhh--c-c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--
Q 023015 189 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K-Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 261 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~--~-~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-- 261 (288)
+...+.+ -...-+++|+++||+||+.+++.|.+.+. . + +..|||+.+ .++|++.+|+++||+.+
T Consensus 9 f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 9 FEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--------KELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp HHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--------HHHHHHTTCSSSSEEEEEE
T ss_pred HHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--------chhhhccCCCCCCEEEEEE
Confidence 4444444 12444778999999999999999988542 2 2 348888643 68999999999999887
Q ss_pred CCE---EecCCCCHHHHHHHh
Q 023015 262 NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 nGe---~y~G~rsLe~La~~s 279 (288)
||+ +|.|.++.++|.++.
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i 100 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFI 100 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHH
Confidence 776 799999999999875
No 10
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.35 E-value=3.1e-12 Score=99.83 Aligned_cols=73 Identities=25% Similarity=0.469 Sum_probs=58.4
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--------E
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--------V 265 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--------~ 265 (288)
-+++|+|+||+||+++++.|.+.+.+ .+..|||+.+. ..++|++++|++|||+++ +|+ +
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~ 94 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVED 94 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCccccccccc
Confidence 36688899999999999999875422 24578997642 358999999999999887 442 5
Q ss_pred ecCCCCHHHHHHHh
Q 023015 266 LSGEQDLSDLAKAS 279 (288)
Q Consensus 266 y~G~rsLe~La~~s 279 (288)
|.|.++.++|.+|.
T Consensus 95 ~~G~~~~~~l~~fi 108 (109)
T cd03002 95 YNGERSAKAIVDFV 108 (109)
T ss_pred ccCccCHHHHHHHh
Confidence 99999999999875
No 11
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.4e-13 Score=131.83 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=61.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhh--------ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAV--------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~--------~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G 268 (288)
.+.|+||||+||+++.+-|.+.|. .++..|||+.+ .++|.+++|+||||++| ||+ .|.|
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G 117 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQDYNG 117 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcceeccC
Confidence 456779999999999999988652 23779999874 58999999999999998 886 5999
Q ss_pred CCCHHHHHHHhCCC
Q 023015 269 EQDLSDLAKASGFP 282 (288)
Q Consensus 269 ~rsLe~La~~sG~~ 282 (288)
.|+.+.+..|+--+
T Consensus 118 ~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 118 PREADGIVKWLKKQ 131 (493)
T ss_pred cccHHHHHHHHHhc
Confidence 99999999987543
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.31 E-value=1.3e-11 Score=94.75 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=57.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
++.|+|+||+||+.+++.|.+.+.. . +..|||+.+ .++|++++|+++||+++ ||+ ++.|.++
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 87 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQGAQP 87 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeecCCCC
Confidence 6688899999999999999774311 2 457888753 58899999999999887 786 5899999
Q ss_pred HHHHHHHh
Q 023015 272 LSDLAKAS 279 (288)
Q Consensus 272 Le~La~~s 279 (288)
.++|.++.
T Consensus 88 ~~~l~~~l 95 (96)
T cd02956 88 EEQLRQML 95 (96)
T ss_pred HHHHHHHh
Confidence 99999875
No 13
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.31 E-value=7.9e-12 Score=92.87 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=57.5
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh---ccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEECCE-EecCCCCHHH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD 274 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~---~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe-~y~G~rsLe~ 274 (288)
.+++|+++|||||+++++.+.+.+. .++. .||++. ..++++++||+++||.++||+ ++.|.++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--------CHHHHHHcCCccCCEEEECCEEEEecCCCHHH
Confidence 4678999999999999999987432 2244 566543 257788999999999999998 8899999999
Q ss_pred HHHHhC
Q 023015 275 LAKASG 280 (288)
Q Consensus 275 La~~sG 280 (288)
|.++..
T Consensus 74 l~~~l~ 79 (82)
T TIGR00411 74 LVEAIK 79 (82)
T ss_pred HHHHHH
Confidence 988753
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.31 E-value=5.8e-12 Score=96.72 Aligned_cols=71 Identities=25% Similarity=0.583 Sum_probs=57.0
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHh--hc------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---Eec
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 267 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA--~~------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~ 267 (288)
-+++|+|+||+||+++++.|.+.+ .+ .+..|||+.+ .++|++.+|+++||+.+ +|+ +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 90 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYK 90 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEee
Confidence 356788999999999999987743 11 2458888754 47899999999999887 775 699
Q ss_pred CCCCHHHHHHHh
Q 023015 268 GEQDLSDLAKAS 279 (288)
Q Consensus 268 G~rsLe~La~~s 279 (288)
|.++.++|.++.
T Consensus 91 G~~~~~~l~~~i 102 (102)
T cd03005 91 GTRDLDSLKEFV 102 (102)
T ss_pred CCCCHHHHHhhC
Confidence 999999998763
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.29 E-value=9.3e-12 Score=98.75 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=58.8
Q ss_pred HHHhhhcccC-eEEEecCCCHHHHHHHHHHhHHhh--ccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 192 SLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 192 aLAkhL~~~g-akmYGApWCpHC~~qK~lFgkeA~--~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
++...++... ++.|+|+||+||+++++.|.+.+. ..+. .||++.+ ..++|++++|++|||.++ +|+
T Consensus 11 ~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-------~~~l~~~~~V~~~PT~~lf~~g~ 83 (100)
T cd02999 11 DLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-------KPSLLSRYGVVGFPTILLFNSTP 83 (100)
T ss_pred HHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-------CHHHHHhcCCeecCEEEEEcCCc
Confidence 3344444433 557889999999999999988542 2343 4555411 358899999999999887 554
Q ss_pred --EecCCCCHHHHHHH
Q 023015 265 --VLSGEQDLSDLAKA 278 (288)
Q Consensus 265 --~y~G~rsLe~La~~ 278 (288)
+|.|.++.++|.+|
T Consensus 84 ~~~~~G~~~~~~l~~f 99 (100)
T cd02999 84 RVRYNGTRTLDSLAAF 99 (100)
T ss_pred eeEecCCCCHHHHHhh
Confidence 69999999999886
No 16
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.27 E-value=2e-11 Score=97.27 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=55.8
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhh--c----cCeeEECCCCCCCCchhhHHhhhh-cCCCccceeEE--CC----EEe
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAV--K----QLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QVL 266 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~--~----~I~yVEC~~~g~n~~~k~~~lC~~-~gI~GyPTw~I--nG----e~y 266 (288)
.-+++|+|+|||||+++++.|.+.+. + .+..|||+.+ ..++|.+ .+|++|||+++ +| .+|
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-------~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y 95 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-------QREFAKEELQLKSFPTILFFPKNSRQPIKY 95 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-------chhhHHhhcCCCcCCEEEEEcCCCCCceec
Confidence 44678899999999999999987541 1 1457888763 1467874 89999999886 43 269
Q ss_pred cCC-CCHHHHHHHh
Q 023015 267 SGE-QDLSDLAKAS 279 (288)
Q Consensus 267 ~G~-rsLe~La~~s 279 (288)
.|. |+.++|.+|.
T Consensus 96 ~g~~~~~~~l~~f~ 109 (109)
T cd02993 96 PSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCHHHHHhhC
Confidence 995 8999998773
No 17
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.26 E-value=2.8e-11 Score=93.08 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=56.9
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE----EecCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLSGE 269 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe----~y~G~ 269 (288)
-+++|+|+||+||+++++.|.+-+.+ + +.++||+.+ .++|++.+|+++||..+ +|+ .|.|.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 92 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGG 92 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeecCCC
Confidence 36688899999999999999774421 2 457888643 57899999999999876 562 69999
Q ss_pred CCHHHHHHHh
Q 023015 270 QDLSDLAKAS 279 (288)
Q Consensus 270 rsLe~La~~s 279 (288)
++.++|.+|.
T Consensus 93 ~~~~~l~~~~ 102 (103)
T cd03001 93 RTAKAIVSAA 102 (103)
T ss_pred CCHHHHHHHh
Confidence 9999999874
No 18
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.25 E-value=1.6e-11 Score=102.18 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=61.4
Q ss_pred eEEEec--CCCH---HHHHHHHHHhHHh-hccCeeEECCCCCCCCchhhHHhhhhcCCC--ccceeEE--CCE-----Ee
Q 023015 202 AKMYGA--FWCS---HCLEQKQMFGSEA-VKQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ-----VL 266 (288)
Q Consensus 202 akmYGA--pWCp---HC~~qK~lFgkeA-~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~--GyPTw~I--nGe-----~y 266 (288)
+++|+| |||+ ||+++.+.|.+.+ ...|..|||+..+. ++..++|+++||+ ||||+++ ||+ .|
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y 98 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGE---KLNMELGERYKLDKESYPVIYLFHGGDFENPVPY 98 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccc---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccC
Confidence 456779 9999 9999999997744 23478999975432 1247999999999 9999887 773 69
Q ss_pred cCC-CCHHHHHHHhCC
Q 023015 267 SGE-QDLSDLAKASGF 281 (288)
Q Consensus 267 ~G~-rsLe~La~~sG~ 281 (288)
+|. |++++|.+|+.-
T Consensus 99 ~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 99 SGADVTVDALQRFLKG 114 (116)
T ss_pred CCCcccHHHHHHHHHh
Confidence 997 999999998754
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.23 E-value=3.4e-11 Score=96.67 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=57.6
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 269 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~ 269 (288)
-+++|+|+||++|+.+++.|.+.+.+ .+..|||+.+ .++|++.+|++|||.++ ||+ ++.|.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~ 98 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYHDSS 98 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEecCC
Confidence 36678899999999999999774311 2468888753 47899999999999886 887 47899
Q ss_pred CCHHHHHHHhC
Q 023015 270 QDLSDLAKASG 280 (288)
Q Consensus 270 rsLe~La~~sG 280 (288)
++.++|.++..
T Consensus 99 ~~~~~l~~~i~ 109 (111)
T cd02963 99 FTKQHVVDFVR 109 (111)
T ss_pred CCHHHHHHHHh
Confidence 99999998753
No 20
>PHA02125 thioredoxin-like protein
Probab=99.22 E-value=5.5e-11 Score=89.62 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=52.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCE---EecCC-CCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe---~y~G~-rsLe~La~ 277 (288)
+++|+|+||+||+.+++.|.+.+ ..+++.+.+. ..++.++++|+++||.. +|+ ++.|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 57899999999999999997643 2344443221 35889999999999987 775 57774 78899988
Q ss_pred HhC
Q 023015 278 ASG 280 (288)
Q Consensus 278 ~sG 280 (288)
..|
T Consensus 72 ~~~ 74 (75)
T PHA02125 72 KLG 74 (75)
T ss_pred HhC
Confidence 776
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=1.6e-10 Score=105.42 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=56.8
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 270 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~r 270 (288)
=+++|+|+||+||+++++.|.+.+.+ .+..|||+.+ .++|++++|++|||.++ ||+ .+.|.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~ 126 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGGDR 126 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCCCC
Confidence 36788899999999999999875421 2456788643 58899999999999876 887 357889
Q ss_pred CHHHHHHHh
Q 023015 271 DLSDLAKAS 279 (288)
Q Consensus 271 sLe~La~~s 279 (288)
+.++|.++.
T Consensus 127 s~e~L~~fi 135 (224)
T PTZ00443 127 STEKLAAFA 135 (224)
T ss_pred CHHHHHHHH
Confidence 999998873
No 22
>PHA02278 thioredoxin-like protein
Probab=99.20 E-value=1.2e-10 Score=93.94 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=63.7
Q ss_pred HHHHhhhcccC--eEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--
Q 023015 191 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 261 (288)
Q Consensus 191 ~aLAkhL~~~g--akmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-- 261 (288)
.+|.+.+.+.+ ++.|+|+||++|+.+++.|.+.+.+ .+.+||.+.+..+ ..+++++++|++.||+.+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEEEE
Confidence 35555555444 5578899999999999999885422 2557787654211 257899999999999887
Q ss_pred CCE---EecCCCCHHHHHHHh
Q 023015 262 NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 nGe---~y~G~rsLe~La~~s 279 (288)
||+ ++.|..+.++|.++-
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhhh
Confidence 887 689999999998874
No 23
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.19 E-value=5.5e-11 Score=93.41 Aligned_cols=72 Identities=17% Similarity=0.374 Sum_probs=56.7
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhhc--------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--Eec
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLS 267 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~~--------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~y~ 267 (288)
.-+++|+|+|||+|+++++.|.+.+.+ .+..+||+.. .++|++.+|+++||+++ +|. +|.
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~I~~~Pt~~l~~~~~~~~~~ 88 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--------SSIASEFGVRGYPTIKLLKGDLAYNYR 88 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--------HhHHhhcCCccccEEEEEcCCCceeec
Confidence 336688899999999999999774422 1346888642 58899999999999887 443 699
Q ss_pred CCCCHHHHHHHh
Q 023015 268 GEQDLSDLAKAS 279 (288)
Q Consensus 268 G~rsLe~La~~s 279 (288)
|.++.++|.++.
T Consensus 89 G~~~~~~l~~~~ 100 (104)
T cd03000 89 GPRTKDDIVEFA 100 (104)
T ss_pred CCCCHHHHHHHH
Confidence 999999999875
No 24
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.18 E-value=6.6e-11 Score=90.60 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=56.6
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-----c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC-E---Eec
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLS 267 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-----~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG-e---~y~ 267 (288)
-+++|+|+||+||+++++.|.+.+.+ + +..+||+.+ ..++|++.+|+++||+++ +| + +|.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~ 93 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKYE 93 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCccccC
Confidence 36789999999999999999774321 2 346788652 258899999999999987 44 3 699
Q ss_pred CCCCHHHHHHHh
Q 023015 268 GEQDLSDLAKAS 279 (288)
Q Consensus 268 G~rsLe~La~~s 279 (288)
|.++.++|.+|.
T Consensus 94 g~~~~~~l~~~i 105 (105)
T cd02998 94 GGRDLEDLVKFV 105 (105)
T ss_pred CccCHHHHHhhC
Confidence 999999998873
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.17 E-value=9.9e-11 Score=89.71 Aligned_cols=70 Identities=26% Similarity=0.474 Sum_probs=55.5
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE-----Ee
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VL 266 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe-----~y 266 (288)
-+++|+|+||+||+.+.+.|.+.+.. .+.+|||+.+ ++|.+.++++|||+.+ +|+ +|
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~~~ 91 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPIKY 91 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCceEc
Confidence 36788899999999999999875421 2357898642 4677889999999887 554 69
Q ss_pred cCCCCHHHHHHHh
Q 023015 267 SGEQDLSDLAKAS 279 (288)
Q Consensus 267 ~G~rsLe~La~~s 279 (288)
.|.++.++|.+|.
T Consensus 92 ~g~~~~~~l~~fi 104 (104)
T cd02995 92 EGDRTLEDLIKFI 104 (104)
T ss_pred cCCcCHHHHHhhC
Confidence 9999999998873
No 26
>PTZ00102 disulphide isomerase; Provisional
Probab=99.17 E-value=2.1e-10 Score=110.79 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=59.6
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhh--------ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--Eec
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAV--------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLS 267 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~--------~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~y~ 267 (288)
.-+++|+|+||+||+++++.|.+.+. ..+..|||+.+ .++|++++|++|||+++ ||+ +|.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y~ 122 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNYS 122 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEec
Confidence 44678889999999999998877431 12568999753 58999999999999887 664 699
Q ss_pred CCCCHHHHHHHhCC
Q 023015 268 GEQDLSDLAKASGF 281 (288)
Q Consensus 268 G~rsLe~La~~sG~ 281 (288)
|.++.++|.++..-
T Consensus 123 g~~~~~~l~~~l~~ 136 (477)
T PTZ00102 123 GGRTADGIVSWIKK 136 (477)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999987643
No 27
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.16 E-value=1.8e-10 Score=88.45 Aligned_cols=74 Identities=30% Similarity=0.528 Sum_probs=57.1
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHh--hc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---Eec
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 267 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA--~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~ 267 (288)
.-++.|+|+||++|+++++.+.+.+ +. . +..|||+.+. ...+|++.+|++|||.++ ||+ +|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 92 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYE 92 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeC
Confidence 3367888999999999998886643 11 1 3467887531 358899999999999877 665 599
Q ss_pred CCCCHHHHHHHh
Q 023015 268 GEQDLSDLAKAS 279 (288)
Q Consensus 268 G~rsLe~La~~s 279 (288)
|.++.++|.+|.
T Consensus 93 g~~~~~~l~~~l 104 (104)
T cd02997 93 GERTAEDIIEFM 104 (104)
T ss_pred CCCCHHHHHhhC
Confidence 999999998763
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.14 E-value=2.2e-10 Score=82.00 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=54.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHHHh
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~s 279 (288)
+++|+++|||+|+++++.|.+. .+.|.+.+-+. ++ ....++++..++.++||++++|+.+.|. +.++|.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~-~~-~~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEK-DS-AAREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccC-CH-HHHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence 6899999999999999999763 35544443321 11 1134567889999999999999998885 678988875
No 29
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.10 E-value=5.5e-10 Score=81.41 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=61.1
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhh--cc--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~--~~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
.++.++ ..-+++|+++||++|+++++.+.+-+. .+ +.+|||+.+ .+++++.++.++||+++ +|+
T Consensus 5 ~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 5 ELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred HHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCE
Confidence 344444 445789999999999999999988432 23 346777643 47899999999999998 776
Q ss_pred ---EecCCCCHHHHHHHh
Q 023015 265 ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 265 ---~y~G~rsLe~La~~s 279 (288)
.+.|..+.++|.++.
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 688998889998764
No 30
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.10 E-value=4.6e-10 Score=97.88 Aligned_cols=62 Identities=26% Similarity=0.383 Sum_probs=45.4
Q ss_pred hhHHHHHHHHH---HHHHHHHHhhhhcCCcccC--CCC-CcCccccccchhhhhcCCchhHHHHHHHH
Q 023015 63 YGWCAGIGGVG---FLETTYLSYLKLTNSDAFC--PIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYG 124 (288)
Q Consensus 63 ~~~i~~la~iG---l~~t~yLT~~k~~~~~~~C--~i~-~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~ 124 (288)
.++..++|++| .+.+.|+.+.+++++...| +.| ..+|++|++||||++||+||+++|+++|.
T Consensus 12 ~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft 79 (156)
T COG4243 12 GWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFT 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHH
Confidence 34444555554 4455555555566665444 545 57999999999999999999999999999
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=99.10 E-value=6.8e-10 Score=87.33 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=57.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 270 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~r 270 (288)
-+++|+|+|||+|+.+++.|.+.+.+ .+..|||+.+ ..++++++|+++||+++ ||+ ++.|..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~ 95 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEecCCC
Confidence 36688899999999999999874422 3568898753 46788999999999988 887 578999
Q ss_pred CHHHHHHHh
Q 023015 271 DLSDLAKAS 279 (288)
Q Consensus 271 sLe~La~~s 279 (288)
+.++|.++.
T Consensus 96 ~~~~l~~~i 104 (109)
T PRK09381 96 SKGQLKEFL 104 (109)
T ss_pred CHHHHHHHH
Confidence 999998775
No 32
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.08 E-value=4.7e-10 Score=90.93 Aligned_cols=71 Identities=24% Similarity=0.483 Sum_probs=52.9
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh--c------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--C-------C
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N-------G 263 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~--~------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--n-------G 263 (288)
=+++|+|+||++|+.+++.|.+-+. + .+..|||+.+. ..++|++++|++|||+++ + |
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~ 95 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRYFPPFSKEATDG 95 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEEECCCCccCCCC
Confidence 3567889999999999999987432 1 24578996531 358899999999999887 3 3
Q ss_pred EEecCC-CCHHHHHH
Q 023015 264 QVLSGE-QDLSDLAK 277 (288)
Q Consensus 264 e~y~G~-rsLe~La~ 277 (288)
.+|.|. |..+++.+
T Consensus 96 ~~~~~~~~~~~~~~~ 110 (114)
T cd02992 96 LKQEGPERDVNELRE 110 (114)
T ss_pred CcccCCccCHHHHHH
Confidence 456666 87777754
No 33
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.06 E-value=1e-09 Score=86.55 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=55.9
Q ss_pred HHHhhhcccC--eEEEecCCCHHHHHHHHHHhHHh--hc----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--
Q 023015 192 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 261 (288)
Q Consensus 192 aLAkhL~~~g--akmYGApWCpHC~~qK~lFgkeA--~~----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-- 261 (288)
++.+++++.+ +++|+|+||+||+.+.+.|.+-+ +. .+..||++ + .+++++++|+++||+.+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEE
Confidence 3444444444 55888999999999999997742 21 24467765 2 36789999999999887
Q ss_pred CCE---EecCCCCHHHHHHHh
Q 023015 262 NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 nGe---~y~G~rsLe~La~~s 279 (288)
||+ +..|. +.++|.++.
T Consensus 80 ~g~~~~~~~G~-~~~~~~~~i 99 (102)
T cd02948 80 NGELVAVIRGA-NAPLLNKTI 99 (102)
T ss_pred CCEEEEEEecC-ChHHHHHHH
Confidence 887 57775 668777764
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.05 E-value=5.8e-10 Score=84.92 Aligned_cols=70 Identities=26% Similarity=0.464 Sum_probs=55.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--hc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 269 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~ 269 (288)
+++|+|+||++|+++.+.|.+.+ ++ . +..+||+.+ .++|++.+|+++||+.+ +|+ +|.|.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--------KDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--------HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 66899999999999998887643 22 2 446778653 68899999999999876 555 69999
Q ss_pred CCHHHHHHHh
Q 023015 270 QDLSDLAKAS 279 (288)
Q Consensus 270 rsLe~La~~s 279 (288)
++.++|.++.
T Consensus 89 ~~~~~l~~~i 98 (102)
T TIGR01126 89 RDLEAIVEFV 98 (102)
T ss_pred CCHHHHHHHH
Confidence 9999998875
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.03 E-value=1.5e-09 Score=85.96 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=54.9
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh--ccC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~--~~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
=++.|+|+||++|+.+++.|.+.+. ..+ -.||++.+. +..+++++++|+++||.++ ||+ ++.|..
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-----~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~- 91 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-----STMELCRREKIIEVPHFLFYKDGEKIHEEEGIG- 91 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-----HHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCC-
Confidence 3668889999999999999987542 233 456665431 2358899999999999877 887 588855
Q ss_pred HHHHHHHhCC
Q 023015 272 LSDLAKASGF 281 (288)
Q Consensus 272 Le~La~~sG~ 281 (288)
.++|.+..-+
T Consensus 92 ~~~l~~~~~~ 101 (103)
T cd02985 92 PDELIGDVLY 101 (103)
T ss_pred HHHHHHHHHh
Confidence 4777765544
No 36
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.01 E-value=1.4e-09 Score=81.10 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=60.4
Q ss_pred HHHhhhccc--CeEEEecCCCHHHHHHHHHHhHHh--h---cc--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE-
Q 023015 192 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 261 (288)
Q Consensus 192 aLAkhL~~~--gakmYGApWCpHC~~qK~lFgkeA--~---~~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I- 261 (288)
.+.+.+.+. -+++|+++||++|+++++.|.+-+ . .. +..|||+.+ .++|++.+|+++||..+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--------NDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--------HHHHHhCCCCCCCEEEEE
Confidence 444445544 467899999999999999997743 2 22 346777642 58899999999999887
Q ss_pred -CC-E---EecCCCCHHHHHHHh
Q 023015 262 -NG-Q---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 -nG-e---~y~G~rsLe~La~~s 279 (288)
+| + +|.|.++.+++.+|.
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 44 3 699999999998863
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.00 E-value=2e-09 Score=81.42 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=56.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--hc---cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--VK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~~---~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
+.+|+++||++|+.+++.|.+-+ +. .+-+|||+.+ .+++++++|+++||+++ +|+ ++.|.++
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGALP 89 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCCCC
Confidence 55788999999999999987743 11 2447887643 47899999999999888 776 5789999
Q ss_pred HHHHHHHhC
Q 023015 272 LSDLAKASG 280 (288)
Q Consensus 272 Le~La~~sG 280 (288)
.++|.++..
T Consensus 90 ~~~l~~~l~ 98 (101)
T TIGR01068 90 KAALKQLIN 98 (101)
T ss_pred HHHHHHHHH
Confidence 999988753
No 38
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.99 E-value=1.2e-09 Score=81.35 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=54.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhcc--CeeEECCCCCCCCchhhHH-hhhhcCCCccceeEECCEEecCCCCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAK-ACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~--I~yVEC~~~g~n~~~k~~~-lC~~~gI~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
+++|+++|||+|++.++++.+.. .. +.++|.+.+. +. ....+ +-+..|++++|+.++||+...|..++.++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~-i~~~~~~~~v~~~~-~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN-VKPAYEVVELDQLS-NG-SEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC-CCCCCEEEEeeCCC-Ch-HHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 47899999999999999998854 23 6688887652 11 11222 4445799999999999999999877776654
No 39
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.99 E-value=1.8e-09 Score=87.49 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=57.5
Q ss_pred HHhhhcccC-e-EEEecCCCHHHHHHHHHHhHHhhc--cC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 193 LAKHLHAIG-A-KMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 193 LAkhL~~~g-a-kmYGApWCpHC~~qK~lFgkeA~~--~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
++++|+... + ++|+|+|||+|+.+++++.+-+.. ++ .+||.+. .+++.++++|++.||..+ ||+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~--------~~~l~~~~~v~~vPt~~i~~~g~ 86 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE--------DKEKAEKYGVERVPTTIFLQDGG 86 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc--------CHHHHHHcCCCcCCEEEEEeCCe
Confidence 666665533 3 466899999999999999885422 23 4566543 258899999999999988 332
Q ss_pred -----EecCCCCHHHHHHHh
Q 023015 265 -----VLSGEQDLSDLAKAS 279 (288)
Q Consensus 265 -----~y~G~rsLe~La~~s 279 (288)
++.|..+-++|.++.
T Consensus 87 ~~~~~~~~G~~~~~el~~~i 106 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLI 106 (113)
T ss_pred ecceEEEEecCchHHHHHHH
Confidence 577888888887764
No 40
>PRK10996 thioredoxin 2; Provisional
Probab=98.98 E-value=3e-09 Score=89.10 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=55.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhh---ccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~---~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
++.|+|+||++|+++++.|.+-+. .++. .||++. ..+++++++|+++||+++ ||+ ++.|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--------~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~ 127 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--------ERELSARFRIRSIPTIMIFKNGQVVDMLNGAVP 127 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--------CHHHHHhcCCCccCEEEEEECCEEEEEEcCCCC
Confidence 567889999999999999977432 1344 456643 258899999999999887 887 5799999
Q ss_pred HHHHHHHhC
Q 023015 272 LSDLAKASG 280 (288)
Q Consensus 272 Le~La~~sG 280 (288)
.++|.++..
T Consensus 128 ~e~l~~~l~ 136 (139)
T PRK10996 128 KAPFDSWLN 136 (139)
T ss_pred HHHHHHHHH
Confidence 999988753
No 41
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.97 E-value=3.5e-10 Score=108.45 Aligned_cols=71 Identities=14% Similarity=0.360 Sum_probs=56.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHH--hh------ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--EecCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSE--AV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 269 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgke--A~------~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~y~G~ 269 (288)
++-|+||||.|||++.++|.+- .+ .++.+.||+. ...+..+.||+||||+++ ||. .|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 4556799999999999999772 12 2355788875 568889999999999887 554 69999
Q ss_pred CCHHHHHHHhC
Q 023015 270 QDLSDLAKASG 280 (288)
Q Consensus 270 rsLe~La~~sG 280 (288)
|+-++|.++.-
T Consensus 119 R~Kd~iieFAh 129 (468)
T KOG4277|consen 119 REKDAIIEFAH 129 (468)
T ss_pred ccHHHHHHHHH
Confidence 99999988764
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.96 E-value=2.2e-09 Score=90.53 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=55.8
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHhhc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE---CCE---Eec
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VLS 267 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgkeA~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I---nGe---~y~ 267 (288)
+.-+++|+|+||++|+.+++.|.+.+.+ + +-.|+.+.+ +..+++++++|+++||+++ ||+ ++.
T Consensus 21 k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~------~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 21 KPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP------KWLPEIDRYRVDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred CEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc------ccHHHHHHcCCCCCCEEEEECCCCCEEEEEe
Confidence 3446688899999999999999875321 2 335555432 1357889999999999876 576 588
Q ss_pred CCCCHHHHHHHhC
Q 023015 268 GEQDLSDLAKASG 280 (288)
Q Consensus 268 G~rsLe~La~~sG 280 (288)
|..+.++|.++.-
T Consensus 95 G~~~~~~l~~~l~ 107 (142)
T cd02950 95 GLQPKQVLAQNLD 107 (142)
T ss_pred CCCCHHHHHHHHH
Confidence 9998888876653
No 43
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.96 E-value=1.2e-09 Score=79.17 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=45.1
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh--ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCE-EecC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG 268 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~--~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe-~y~G 268 (288)
.+++|+++|||+|+++++++.+.+. .++.+.+.+-+. .+++.++.||++.||+.+||+ ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 4689999999999999999987432 234443333221 246788999999999999997 3544
No 44
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.96 E-value=3.2e-09 Score=83.06 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred HHhhhcccC--eEEEecCCCHHHHHHHHHHh---HHh--hc-cCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE-
Q 023015 193 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFG---SEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 261 (288)
Q Consensus 193 LAkhL~~~g--akmYGApWCpHC~~qK~lFg---keA--~~-~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I- 261 (288)
+.+.+++.. +++|+|+||++|+++++.+. +.+ .. ++. .||++.+. ....+++++++|+++||+++
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND----PEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC----HHHHHHHHHcCCCCCCEEEEE
Confidence 334444333 66899999999999997652 211 12 343 56665431 12468899999999999887
Q ss_pred C---CE---EecCCCCHHHHHHHh
Q 023015 262 N---GQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 n---Ge---~y~G~rsLe~La~~s 279 (288)
+ |+ ++.|.++.++|.++.
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 3 55 589999999998874
No 45
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.96 E-value=1.6e-09 Score=90.31 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=59.3
Q ss_pred HHHhhhcccC---eEEEecCCCH--HHH--HHHHHHhHHhhc-------cCeeEECCCCCCCCchhhHHhhhhcCCCccc
Q 023015 192 SLAKHLHAIG---AKMYGAFWCS--HCL--EQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFP 257 (288)
Q Consensus 192 aLAkhL~~~g---akmYGApWCp--HC~--~qK~lFgkeA~~-------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyP 257 (288)
.|.+.+++.. +++|.|+||+ ||+ .+.+.+.+.|.+ ++..|||+.+ .++|+++||+++|
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--------~~La~~~~I~~iP 89 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--------AKVAKKLGLDEED 89 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--------HHHHHHcCCcccc
Confidence 3444444444 5688888884 799 566666554422 3568888753 6999999999999
Q ss_pred eeEE--CCE--EecCCCCHHHHHHHh
Q 023015 258 TWVI--NGQ--VLSGEQDLSDLAKAS 279 (288)
Q Consensus 258 Tw~I--nGe--~y~G~rsLe~La~~s 279 (288)
|+++ ||+ .|.|.++.++|.++.
T Consensus 90 Tl~lfk~G~~v~~~G~~~~~~l~~~l 115 (120)
T cd03065 90 SIYVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred EEEEEECCEEEEeeCCCCHHHHHHHH
Confidence 9887 997 599999999999875
No 46
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.95 E-value=2.8e-09 Score=101.36 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=57.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhh--------ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE----Eec
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAV--------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS 267 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~--------~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe----~y~ 267 (288)
+++|+|+||+||+++++.|.+.|. ..+..|||+.+ .++|++.+|++|||+.+ +|+ +|.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~ 93 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSDYN 93 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeEec
Confidence 667889999999999999876431 12457899753 58999999999999887 665 599
Q ss_pred CCCCHHHHHHHhCC
Q 023015 268 GEQDLSDLAKASGF 281 (288)
Q Consensus 268 G~rsLe~La~~sG~ 281 (288)
|.++.++|.++...
T Consensus 94 g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 94 GPRDADGIVKYMKK 107 (462)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888743
No 47
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-09 Score=110.24 Aligned_cols=73 Identities=23% Similarity=0.472 Sum_probs=57.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--c-----CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE---CCE----Eec
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--Q-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VLS 267 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~-----I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I---nGe----~y~ 267 (288)
.+.|+||||+||+++++.|.+.|-+ . |+++|-+.|.. ...+|++|||+.+ +++ .|.
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~----------~~~~~~~fPTI~~~pag~k~~pv~y~ 457 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV----------PSLKVDGFPTILFFPAGHKSNPVIYN 457 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC----------ccccccccceEEEecCCCCCCCcccC
Confidence 4567799999999999999986522 1 56888876532 2358999999887 332 699
Q ss_pred CCCCHHHHHHHhCCCCC
Q 023015 268 GEQDLSDLAKASGFPEM 284 (288)
Q Consensus 268 G~rsLe~La~~sG~~g~ 284 (288)
|.|+|++|.+++.-.|.
T Consensus 458 g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 458 GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCcchHHHHhhhccCCC
Confidence 99999999999887775
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.94 E-value=4.9e-09 Score=81.52 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=54.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--h-ccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--V-KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~-~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
+++|+|+||++|+++++.+.+-+ . .++. .||++. ..++..+.+|+++||+.+ ||+ ++.|.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--------DQEIAEAAGIMGTPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--------CHHHHHHCCCeeccEEEEEECCeEEEEEeCCcc
Confidence 66899999999999999887632 1 1343 455532 257889999999999887 886 5899999
Q ss_pred HHHHHHHh
Q 023015 272 LSDLAKAS 279 (288)
Q Consensus 272 Le~La~~s 279 (288)
.++|.++.
T Consensus 89 ~~~~~~~l 96 (97)
T cd02949 89 KSEYREFI 96 (97)
T ss_pred HHHHHHhh
Confidence 99998775
No 49
>PTZ00051 thioredoxin; Provisional
Probab=98.93 E-value=5e-09 Score=80.41 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=50.9
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc--cCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 271 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~--~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rs 271 (288)
-+.+|+|+||++|+++++.|.+.+.+ .+. .|||+. ..+++++++|+++||..+ ||+ ++.|. .
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~ 91 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE--------LSEVAEKENITSMPTFKVFKNGSVVDTLLGA-N 91 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc--------hHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-C
Confidence 35688899999999999999875432 233 566643 358899999999999877 786 57886 4
Q ss_pred HHHHHH
Q 023015 272 LSDLAK 277 (288)
Q Consensus 272 Le~La~ 277 (288)
-++|.+
T Consensus 92 ~~~~~~ 97 (98)
T PTZ00051 92 DEALKQ 97 (98)
T ss_pred HHHhhc
Confidence 466654
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.91 E-value=8.1e-09 Score=78.91 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=52.5
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc---cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCCH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDL 272 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~---~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rsL 272 (288)
=+++|+|+||++|+++++.|.+.+.+ .+.++.++.+. ..+++++++|+++||+++ ||+ ++.|. +.
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~ 89 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DP 89 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-CH
Confidence 35678899999999999999875433 34444443221 358899999999999887 887 46675 45
Q ss_pred HHHHHHh
Q 023015 273 SDLAKAS 279 (288)
Q Consensus 273 e~La~~s 279 (288)
++|.+..
T Consensus 90 ~~l~~~~ 96 (97)
T cd02984 90 KELAKKV 96 (97)
T ss_pred HHHHHhh
Confidence 7777653
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.91 E-value=4.1e-09 Score=105.36 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=56.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE----Eec-C
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS-G 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe----~y~-G 268 (288)
+++|+|+||+||+.+++.|.+.|.+ ++.+|+|+.+. ....+++++|++|||+++ ||+ .|. |
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g 448 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYPSE 448 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCCCC
Confidence 6688899999999999999886532 25679997541 123346899999999887 663 697 5
Q ss_pred CCCHHHHHHHhC
Q 023015 269 EQDLSDLAKASG 280 (288)
Q Consensus 269 ~rsLe~La~~sG 280 (288)
.|+++.|..|..
T Consensus 449 ~R~~e~L~~Fv~ 460 (463)
T TIGR00424 449 KRDVDSLMSFVN 460 (463)
T ss_pred CCCHHHHHHHHH
Confidence 899999998864
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=98.89 E-value=5.7e-09 Score=104.19 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=57.4
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHhhc------cCeeEECCCCCCCCchhhHHhhh-hcCCCccceeEE--CCE----E
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ----V 265 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgkeA~~------~I~yVEC~~~g~n~~~k~~~lC~-~~gI~GyPTw~I--nGe----~ 265 (288)
+.-+++|+|+||+||+.+++.|.+.+.+ ++..|||+.+ +.++|+ +++|++|||+++ +|. +
T Consensus 366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v~ 438 (457)
T PLN02309 366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPIK 438 (457)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCeee
Confidence 3346688899999999999999885422 2468888732 247786 589999999887 553 6
Q ss_pred ecC-CCCHHHHHHHhC
Q 023015 266 LSG-EQDLSDLAKASG 280 (288)
Q Consensus 266 y~G-~rsLe~La~~sG 280 (288)
|.| .|+.+.|.+|..
T Consensus 439 Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 439 YPSEKRDVDSLLSFVN 454 (457)
T ss_pred cCCCCcCHHHHHHHHH
Confidence 875 699999998863
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=98.87 E-value=4e-09 Score=101.95 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=58.6
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhc-------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC-E---Eec
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLS 267 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~-------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG-e---~y~ 267 (288)
-+++|+|+||+||+++++.|.+.|.. .+.+|||+.+ ...|++.+|++|||+.+ +| + +|.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--------~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~ 449 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--------ETPLEEFSWSAFPTILFVKAGERTPIPYE 449 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--------ccchhcCCCcccCeEEEEECCCcceeEec
Confidence 36688899999999999999874311 2567899764 25688999999999877 44 3 589
Q ss_pred CCCCHHHHHHHhCCCC
Q 023015 268 GEQDLSDLAKASGFPE 283 (288)
Q Consensus 268 G~rsLe~La~~sG~~g 283 (288)
|.++.++|.++..-..
T Consensus 450 G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 450 GERTVEGFKEFVNKHA 465 (477)
T ss_pred CcCCHHHHHHHHHHcC
Confidence 9999999998876543
No 54
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.87 E-value=1.4e-08 Score=82.01 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred HHHhhhccc---CeEEEecCCCHHHHHHHHHHhH------HhhccCeeEECCCCCCC-------CchhhHHhhhhcCCCc
Q 023015 192 SLAKHLHAI---GAKMYGAFWCSHCLEQKQMFGS------EAVKQLNYVECFPDGYR-------KGTKIAKACSDAKIEG 255 (288)
Q Consensus 192 aLAkhL~~~---gakmYGApWCpHC~~qK~lFgk------eA~~~I~yVEC~~~g~n-------~~~k~~~lC~~~gI~G 255 (288)
++++++++. -+++|+|+||+||+++++.+.+ ...+.+..+..+.+... ...+..+++.+++|++
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344444444 4678999999999999876531 11123433333322110 0012368899999999
Q ss_pred cceeEE---C-CE---EecCCCCHHHHHHHh
Q 023015 256 FPTWVI---N-GQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 256 yPTw~I---n-Ge---~y~G~rsLe~La~~s 279 (288)
+||.++ + |+ ++.|..+.+++.++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l 115 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYL 115 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence 999777 4 55 688998888887765
No 55
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.85 E-value=8.5e-09 Score=85.36 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=55.7
Q ss_pred eEEEecCC--CHHHHHHHHHHhHHhhc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCC
Q 023015 202 AKMYGAFW--CSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 269 (288)
Q Consensus 202 akmYGApW--CpHC~~qK~lFgkeA~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~ 269 (288)
+++|+|.| ||+|+++++.|.+.+.+ + +-+||++.+ .++..+++|++.||+++ ||+ ++.|.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--------~~la~~f~V~sIPTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--------QALAARFGVLRTPALLFFRDGRYVGVLAGI 102 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--------HHHHHHcCCCcCCEEEEEECCEEEEEEeCc
Confidence 66899997 99999999999886532 2 347777653 48899999999999887 998 57899
Q ss_pred CCHHHHHH
Q 023015 270 QDLSDLAK 277 (288)
Q Consensus 270 rsLe~La~ 277 (288)
++.++|.+
T Consensus 103 ~~~~e~~~ 110 (111)
T cd02965 103 RDWDEYVA 110 (111)
T ss_pred cCHHHHhh
Confidence 99999864
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.85 E-value=1.4e-08 Score=83.94 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=55.7
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhh---ccCeeEECCCCCCCC---chhhHHhhhh----cCCCccceeEE--CCE---
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRK---GTKIAKACSD----AKIEGFPTWVI--NGQ--- 264 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~---~~I~yVEC~~~g~n~---~~k~~~lC~~----~gI~GyPTw~I--nGe--- 264 (288)
..+++||++|||+|+.+++.+.+.+. ..+-|||-+.+.... .....++.++ .+|.+.||+++ ||+
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~ 104 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVS 104 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEE
Confidence 44889999999999999999988542 236789987543111 0123344454 45677999887 896
Q ss_pred EecC-CCCHHHHHHHh
Q 023015 265 VLSG-EQDLSDLAKAS 279 (288)
Q Consensus 265 ~y~G-~rsLe~La~~s 279 (288)
+..| ..++++|.++.
T Consensus 105 ~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 105 VRCGSSTTAQELQDIA 120 (122)
T ss_pred EEeCCCCCHHHHHHHh
Confidence 5667 55699998874
No 57
>PHA03050 glutaredoxin; Provisional
Probab=98.84 E-value=1.3e-08 Score=83.15 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=61.5
Q ss_pred HHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc--cCeeEECCCCCCCCchhhHHhhh-hcCCCccceeEECCEEecC
Q 023015 192 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVINGQVLSG 268 (288)
Q Consensus 192 aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~--~I~yVEC~~~g~n~~~k~~~lC~-~~gI~GyPTw~InGe~y~G 268 (288)
.+-+.+++..+++|..+|||+|++.|.+|.+...+ .+.++|.+....+ .+.++..+ ..|.+..|+++|||+.+.|
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~--~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPE--NELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCC--HHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 45566778889999999999999999999774221 3556777653211 12233344 5689999999999999999
Q ss_pred CCCHHHHHH
Q 023015 269 EQDLSDLAK 277 (288)
Q Consensus 269 ~rsLe~La~ 277 (288)
-.++.+|.+
T Consensus 83 ~ddl~~l~~ 91 (108)
T PHA03050 83 YSDLLEIDN 91 (108)
T ss_pred hHHHHHHHH
Confidence 888777654
No 58
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.84 E-value=1.1e-08 Score=81.94 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=59.6
Q ss_pred hhhcccCeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHH
Q 023015 195 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 274 (288)
Q Consensus 195 khL~~~gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~ 274 (288)
+.++++.+++|+.+|||+|++.|.+|.+. .....+||.+.+.... ..+..+-+..|.+.+|..+|||+.+.|-.++.+
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 45677889999999999999999999874 3345678887542111 112223334688999999999999999888777
Q ss_pred HHH
Q 023015 275 LAK 277 (288)
Q Consensus 275 La~ 277 (288)
|.+
T Consensus 81 l~~ 83 (99)
T TIGR02189 81 LHI 83 (99)
T ss_pred HHH
Confidence 653
No 59
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.83 E-value=2.8e-08 Score=85.80 Aligned_cols=71 Identities=10% Similarity=0.228 Sum_probs=52.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc------cCeeEECCCCCCCCchhhHHhhhhcCCCc------cceeEE--CCE---
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ--- 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~------~I~yVEC~~~g~n~~~k~~~lC~~~gI~G------yPTw~I--nGe--- 264 (288)
++.|+|+|||||+++++.|.+.+.+ ++..|||+.+ .++|++++|++ +||+++ ||+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--------HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 7788899999999999999875421 2457888653 58899999988 999887 887
Q ss_pred EecC-----------CCCHHHHHHHhC
Q 023015 265 VLSG-----------EQDLSDLAKASG 280 (288)
Q Consensus 265 ~y~G-----------~rsLe~La~~sG 280 (288)
++.| .-++|++.+...
T Consensus 123 r~~G~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 123 RRPYYNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred EEeccccCccccccccccHHHHHHhcc
Confidence 4554 456666665543
No 60
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.83 E-value=1.4e-08 Score=90.49 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=59.5
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc--cCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 263 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~--~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG 263 (288)
...|.+.-+..-+++|+|+|||||+..++++.+-+.+ ++. +||.+. ..+++.+++|+++||+.+ +|
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~--------~~~~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE--------NPDLAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC--------CHHHHHHhCCccCCEEEEecCC
Confidence 3334443334456678999999999999988875432 344 344432 257889999999999999 45
Q ss_pred EEecCCCCHHHHHHHh
Q 023015 264 QVLSGEQDLSDLAKAS 279 (288)
Q Consensus 264 e~y~G~rsLe~La~~s 279 (288)
+++.|..+.++|.++.
T Consensus 197 ~~~~G~~~~~~l~~~l 212 (215)
T TIGR02187 197 EEFVGAYPEEQFLEYI 212 (215)
T ss_pred EEEECCCCHHHHHHHH
Confidence 5699999999998875
No 61
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.83 E-value=1.3e-08 Score=77.16 Aligned_cols=69 Identities=12% Similarity=0.297 Sum_probs=50.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc---cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCE-EecCC-CCHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLA 276 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~---~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe-~y~G~-rsLe~La 276 (288)
+.|| |+|||+|+.+++.|.+.+.+ ++.+++.+. .+...++||.+.||+.+||+ .+.|. .+.++|.
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIK 72 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHH
Confidence 4566 79999999999999885432 244555541 23467899999999999997 57785 4568888
Q ss_pred HHhC
Q 023015 277 KASG 280 (288)
Q Consensus 277 ~~sG 280 (288)
++.+
T Consensus 73 ~~l~ 76 (76)
T TIGR00412 73 EILK 76 (76)
T ss_pred HHhC
Confidence 8764
No 62
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.81 E-value=1.2e-08 Score=84.67 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=43.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc---c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~---~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
++.|+|+|||+|+.+++.|.+.+.+ . +-+||.+.+ .++.++++|++.||+.+ ||+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--------~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--------PDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCE
Confidence 5678899999999999999886532 2 345666542 58899999999999887 886
No 63
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7e-09 Score=99.66 Aligned_cols=82 Identities=24% Similarity=0.424 Sum_probs=65.0
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHh--hc---cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 263 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA--~~---~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG 263 (288)
..+..+-.+..+++|+||||+||+++.+.|.+.+ .+ ++.-|||+.+ .++|++++|+||||+.+ +|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcCC
Confidence 3445555777788999999999999999998743 11 3567888764 69999999999999887 55
Q ss_pred -E--EecCCCCHHHHHHHhC
Q 023015 264 -Q--VLSGEQDLSDLAKASG 280 (288)
Q Consensus 264 -e--~y~G~rsLe~La~~sG 280 (288)
+ .|.|.++.++++++.-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLI 131 (383)
T ss_pred CceeeccCcccHHHHHHHHH
Confidence 2 5999999999988754
No 64
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.76 E-value=2.5e-08 Score=78.53 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=59.3
Q ss_pred HHHHhhhccc-CeEEEecCCCHHHHHHHHHHhHHhhc--cCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEECCE-
Q 023015 191 LSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ- 264 (288)
Q Consensus 191 ~aLAkhL~~~-gakmYGApWCpHC~~qK~lFgkeA~~--~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe- 264 (288)
++.++.|+.. .+++|.++||++|...++++.+.+.. ++. .||-+. ..++.+++||.+.||.++||+
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~--------~~e~a~~~~V~~vPt~vidG~~ 75 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL--------FQDEVEERGIMSVPAIFLNGEL 75 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh--------CHHHHHHcCCccCCEEEECCEE
Confidence 3444566655 68899999999999999999885422 344 444332 357889999999999999998
Q ss_pred EecCCCCHHHHHH
Q 023015 265 VLSGEQDLSDLAK 277 (288)
Q Consensus 265 ~y~G~rsLe~La~ 277 (288)
.+.|..+++++..
T Consensus 76 ~~~G~~~~~e~~~ 88 (89)
T cd03026 76 FGFGRMTLEEILA 88 (89)
T ss_pred EEeCCCCHHHHhh
Confidence 5788788887653
No 65
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.76 E-value=1.4e-08 Score=79.62 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=48.1
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhH-Hh-hc----cCe--eEECCCCCC------------CCchhhHHhhhhcCCCccce
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGS-EA-VK----QLN--YVECFPDGY------------RKGTKIAKACSDAKIEGFPT 258 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgk-eA-~~----~I~--yVEC~~~g~------------n~~~k~~~lC~~~gI~GyPT 258 (288)
+.-+.+|+++|||+|+++.+...+ .+ .. .+. +++++.+.. +-.....++.+..||+|+||
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 344778999999999999664433 21 11 233 444432210 00112356888999999999
Q ss_pred eEE---CCE---EecCCCCHHHHHHHh
Q 023015 259 WVI---NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 259 w~I---nGe---~y~G~rsLe~La~~s 279 (288)
+.+ ||+ ++.|-.+.++|.++.
T Consensus 86 ~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 998 477 789999999998763
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.75 E-value=2.7e-08 Score=88.57 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred Hhhhc-ccCeEEEec---CCCHHHHHHHHHHhHHhhc--c--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC
Q 023015 194 AKHLH-AIGAKMYGA---FWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 263 (288)
Q Consensus 194 AkhL~-~~gakmYGA---pWCpHC~~qK~lFgkeA~~--~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG 263 (288)
.++++ ...+++|.+ +|||||+.+++++.+.+.+ + +.+|+++.+. ..+++++++|+++||+.+ ||
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCC
Confidence 34343 444667877 9999999999999885422 2 4477776431 368999999999999887 55
Q ss_pred E----EecCCCCHHHHHHH
Q 023015 264 Q----VLSGEQDLSDLAKA 278 (288)
Q Consensus 264 e----~y~G~rsLe~La~~ 278 (288)
+ ++.|..+.++|.++
T Consensus 88 ~~~~~~~~G~~~~~~l~~~ 106 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAAL 106 (215)
T ss_pred eeeEEEEeecCCHHHHHHH
Confidence 3 68898888777544
No 67
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.74 E-value=1.4e-08 Score=81.42 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=45.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--cC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 270 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~r 270 (288)
++.|+|+||++|+.+++.|.+.|.+ .+ ..||++. . +++++++|+++||+++ ||+ ++.|.+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~--------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK--------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh--------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 5678899999999999999885432 34 3555532 3 7889999999999887 887 455544
No 68
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.74 E-value=4e-08 Score=79.77 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=42.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
++.|+|+||++|+.+++.+.+.+.+ ++-.||.+. ..++.++++|++.||..+ ||+
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~--------~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK--------APFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc--------CHHHHHHCCCccCCEEEEEECCE
Confidence 5578899999999999999885422 234566543 357889999999999887 886
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.73 E-value=3.9e-08 Score=70.34 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=50.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 278 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~ 278 (288)
+++|+++|||+|+++++++.+. ...+..++.+.+. ....++.+..++.++|+++++|+.+.|... ++|+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~----~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~-~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP----EALEELKKLNGYRSVPVVVIGDEHLSGFRP-DKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH----HHHHHHHHHcCCcccCEEEECCEEEecCCH-HHHHhh
Confidence 6899999999999999999763 2234456665431 112333444588999999999999988754 677765
No 70
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=2.1e-08 Score=102.06 Aligned_cols=64 Identities=27% Similarity=0.520 Sum_probs=50.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--------cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE------C---CE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---GQ 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--------~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I------n---Ge 264 (288)
++.|+|.||+||++.++.|.+-|.. +|..|||..+. | .++|++++|++|||++. | |+
T Consensus 61 lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G~ 134 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDGS 134 (606)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCCC
Confidence 4556699999999999999985521 36799998652 3 58999999999999887 3 77
Q ss_pred EecCCCC
Q 023015 265 VLSGEQD 271 (288)
Q Consensus 265 ~y~G~rs 271 (288)
.++|...
T Consensus 135 ~~~~~~~ 141 (606)
T KOG1731|consen 135 DVSGPVI 141 (606)
T ss_pred cccCCcc
Confidence 7888543
No 71
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.68 E-value=4.1e-08 Score=73.64 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
+++|+.+|||+|++.+++|.+. .....++|.+.+. ..+.++-+..|...+|+.++||+...|-.++.+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~----~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDP----ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCH----HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 4799999999999999999874 3345677776542 112343345689999999999999999999888875
No 72
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.68 E-value=2.1e-07 Score=94.77 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=55.4
Q ss_pred ccCeEEEecCCCHHHHHHHHH-HhHH----hhccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE---CCE----
Q 023015 199 AIGAKMYGAFWCSHCLEQKQM-FGSE----AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---- 264 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~l-Fgke----A~~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I---nGe---- 264 (288)
+.=++.|+|+||++|+++++. |..+ +.+++. .||.+.+. .+.+++.++++|+++||..+ ||+
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~----~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~ 550 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN----AEDVALLKHYNVLGLPTILFFDAQGQEIPD 550 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC----hhhHHHHHHcCCCCCCEEEEECCCCCCccc
Confidence 334667889999999999874 5322 223333 56776432 12468899999999999887 575
Q ss_pred -EecCCCCHHHHHHHhC
Q 023015 265 -VLSGEQDLSDLAKASG 280 (288)
Q Consensus 265 -~y~G~rsLe~La~~sG 280 (288)
++.|..+.+++.++..
T Consensus 551 ~r~~G~~~~~~f~~~L~ 567 (571)
T PRK00293 551 ARVTGFMDAAAFAAHLR 567 (571)
T ss_pred ccccCCCCHHHHHHHHH
Confidence 4679999999887653
No 73
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.68 E-value=5.7e-08 Score=72.40 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=54.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
+++|+++|||+|++.++++.+.. ....++|.+.+.... .-+..+-+..|+.++|+.++||+...|-.++.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELG-VKPAVVELDQHEDGS-EIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcC-CCcEEEEEeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 68999999999999999999853 356677776553111 001223345689999999999999988888877764
No 74
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.67 E-value=4.7e-08 Score=74.89 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=51.6
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh--ccCe--eEECCCCCCCCchhhHHhhh--hcCCCccceeEECCEEecCCCCHHH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACS--DAKIEGFPTWVINGQVLSGEQDLSD 274 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~--~~I~--yVEC~~~g~n~~~k~~~lC~--~~gI~GyPTw~InGe~y~G~rsLe~ 274 (288)
.+++|+.+|||+|++.|+++.+... ..++ ++|...++.. ..++-+ ..+++.+|+.+|||+...|-.++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~----~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS----KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH----HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 4789999999999999999988432 2455 4555443211 122222 2346899999999999999888887
Q ss_pred HHH
Q 023015 275 LAK 277 (288)
Q Consensus 275 La~ 277 (288)
+.+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 764
No 75
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.64 E-value=1e-07 Score=76.00 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=60.8
Q ss_pred HHHHhhhcccCeEEEec-----CCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEE
Q 023015 191 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 265 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGA-----pWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~ 265 (288)
..+.+.++++.+++|.- +|||+|++.|.+|.+. .....++|...+ . .-+..+.+..|.+.+|..+|||+.
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-~i~~~~~di~~~---~-~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-GVPFAYVNVLED---P-EIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-CCCEEEEECCCC---H-HHHHHHHHHhCCCCCCEEEECCEE
Confidence 35667788889999954 9999999999999774 223334555332 1 123455556788999999999999
Q ss_pred ecCCCCHHHHHH
Q 023015 266 LSGEQDLSDLAK 277 (288)
Q Consensus 266 y~G~rsLe~La~ 277 (288)
+.|-.++.+|.+
T Consensus 78 iGG~ddl~~l~~ 89 (97)
T TIGR00365 78 VGGCDIIMEMYQ 89 (97)
T ss_pred EeChHHHHHHHH
Confidence 999998888764
No 76
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.64 E-value=5.7e-08 Score=68.89 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=51.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 276 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La 276 (288)
+++|+++|||+|++.+.++.+.. ..+..+|...+.. ....+-+..+...+|+.++||+.+.|..++.+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-i~~~~~di~~~~~----~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-IEFEEIDILEDGE----LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CcEEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 68999999999999999998852 3344566654321 1233344568899999999999999887776664
No 77
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.62 E-value=1.3e-07 Score=69.11 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=47.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhh-h-cCCCccceeEE-CCEEecCCCCHHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACS-D-AKIEGFPTWVI-NGQVLSGEQDLSDLAKA 278 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~-~-~gI~GyPTw~I-nGe~y~G~rsLe~La~~ 278 (288)
+++|+++|||+|++.++++.+. ...+.+||.+.+. . ..+... . .++.+.|++++ ||+... .-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~--~---~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDE--G---AADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCH--h---HHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHH
Confidence 6899999999999999999874 2345677776542 1 122222 2 38999999988 555444 5555676654
No 78
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.61 E-value=7.8e-08 Score=73.11 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=51.8
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHH
Q 023015 198 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 274 (288)
Q Consensus 198 ~~~gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~ 274 (288)
.+..+++|+.+|||+|++.|.++.+. ......||++.+. . ...+-+..|.+.+|..++||+...|-.++.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHHHH
Confidence 45568999999999999999999763 2334466665432 1 2344445699999999999999888755443
No 79
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.61 E-value=8.2e-08 Score=74.45 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=50.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--cCeeEECCCCCCCCchhhHHhhhhcC--CCccceeEECCEEecCCCCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~I~yVEC~~~g~n~~~k~~~lC~~~g--I~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
+++|+.+|||+|++.|+++.+...+ .+.|.+.+-+.... ...++-+..| ++..|+++|||+...|-.++.++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~--~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI--SKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH--HHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 6799999999999999999875322 34554443321110 1122323334 5899999999999999988888764
No 80
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.60 E-value=1.1e-07 Score=69.94 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=53.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCC-ccceeEECCEEecCCCCHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~-GyPTw~InGe~y~G~rsLe~La~ 277 (288)
+++|+.+|||+|++.+.+|.+. .....++|.+.+. ..+.++-+..|.+ ++|+.++||+...|-.++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~----~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP----ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH----HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 6899999999999999999874 2234456665431 1123333456777 99999999999999999888875
No 81
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.60 E-value=5.7e-08 Score=72.28 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 276 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La 276 (288)
+++|+.+|||+|++.+.+|.+. .....++|...+. ....++-+..+-..+|+.++||+.+.|-.++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~----~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFP----ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6899999999999999999874 3345567776542 11344455567889999999999999988887765
No 82
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.3e-07 Score=71.81 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=54.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhc-CCCccceeEECCEEecCCCCHHHHHHHh
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~-gI~GyPTw~InGe~y~G~rsLe~La~~s 279 (288)
.+.+|.-+|||+|++.|.++.+. .++|.|.+.+..+ .++.++.-++. |.+.+|.++|||+...|..++++|.+.-
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~---g~~~~~i~~~~~~-~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~ 77 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRK---GVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKG 77 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHc---CCCcEEEEecCCc-HHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhc
Confidence 47899999999999999998863 4554444333212 12233445544 8999999999999999999999987643
No 83
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2e-07 Score=88.84 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=72.5
Q ss_pred cccCCCCHHHHHHHhhhcccC-eEEEecCCCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCC
Q 023015 181 EITTSSSPFALSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIE 254 (288)
Q Consensus 181 ~itt~S~~~~~aLAkhL~~~g-akmYGApWCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~ 254 (288)
.+..++.-++..+-+..++.- .+.|+||||++|+++.++.+|.+.+ ++.+|||+.+ +.+..++||+
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiq 96 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQ 96 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcC
Confidence 333445556777777777755 4578899999999999999985422 4789999864 5888899999
Q ss_pred ccceeEE--CCEE---ecCCCCHHHHHHHhCC
Q 023015 255 GFPTWVI--NGQV---LSGEQDLSDLAKASGF 281 (288)
Q Consensus 255 GyPTw~I--nGe~---y~G~rsLe~La~~sG~ 281 (288)
+.||.+. +|+- +.|.+.-+.|.+|..-
T Consensus 97 sIPtV~af~dGqpVdgF~G~qPesqlr~~ld~ 128 (304)
T COG3118 97 SIPTVYAFKDGQPVDGFQGAQPESQLRQFLDK 128 (304)
T ss_pred cCCeEEEeeCCcCccccCCCCcHHHHHHHHHH
Confidence 9999764 9983 7899998899888653
No 84
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.54 E-value=1.9e-07 Score=67.02 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=43.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhh-hcCCCccceeEECCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVINGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~-~~gI~GyPTw~InGe~ 265 (288)
+++|+.+|||+|++.|.+|.+. .....++|.+.+. +.++..+ ..|..++|+.++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~-----~~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDE-----EAREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSH-----HHHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccch-----hHHHHHHHHcCCCccCEEEECCEE
Confidence 5799999999999999999763 3345577776542 1334444 4599999999999985
No 85
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.52 E-value=1.7e-07 Score=89.19 Aligned_cols=73 Identities=22% Similarity=0.428 Sum_probs=56.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--h-c-----cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE-----Ee
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--V-K-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VL 266 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~-~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe-----~y 266 (288)
+++|+|+||+||+++++.|.+.+ . . ++.+|||+.+ +... .+|++|||+.+ +|+ +|
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCceEe
Confidence 66788999999999999987743 1 1 2467888653 2223 89999999887 442 58
Q ss_pred cCCCCHHHHHHHhCCCCC
Q 023015 267 SGEQDLSDLAKASGFPEM 284 (288)
Q Consensus 267 ~G~rsLe~La~~sG~~g~ 284 (288)
.|.++.++|.++.....+
T Consensus 438 ~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred cCcCCHHHHHHHHHhcCC
Confidence 999999999999877654
No 86
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.51 E-value=2e-07 Score=72.81 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=59.8
Q ss_pred hhhcccCeEEEec-----CCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCC
Q 023015 195 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 269 (288)
Q Consensus 195 khL~~~gakmYGA-----pWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~ 269 (288)
+.++++.+++|.. +|||+|++.|.++.+. ...+.++|...+. .-+..+.+..|-+.+|+.+|||+.+.|-
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~----~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE----EVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH----HHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 5577788999955 7999999999999874 2345567765431 1244555567999999999999999999
Q ss_pred CCHHHHHH
Q 023015 270 QDLSDLAK 277 (288)
Q Consensus 270 rsLe~La~ 277 (288)
.++.+|.+
T Consensus 78 ~~l~~l~~ 85 (90)
T cd03028 78 DIVKEMHE 85 (90)
T ss_pred HHHHHHHH
Confidence 88888865
No 87
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.7e-07 Score=90.23 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=61.2
Q ss_pred HhhhcccCeEEEecCCCHHHHHHHHHHhHHhh-----c--cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC-
Q 023015 194 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 263 (288)
Q Consensus 194 AkhL~~~gakmYGApWCpHC~~qK~lFgkeA~-----~--~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG- 263 (288)
.+.-++.-.++|+||||+||+++++.|.+.+. . .+..+||+. ...+|.+.+|++|||.++ +|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCCC
Confidence 33344444667779999999999999988542 1 245778863 368899999999999987 33
Q ss_pred ---EEecCCCCHHHHHHHhCC
Q 023015 264 ---QVLSGEQDLSDLAKASGF 281 (288)
Q Consensus 264 ---e~y~G~rsLe~La~~sG~ 281 (288)
+.|.|.|+.+.+.++.--
T Consensus 230 ~~~~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 230 EDIYYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred cccccccccccHHHHHHHHHh
Confidence 358999999999988754
No 88
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.43 E-value=5.2e-07 Score=66.78 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=48.5
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 274 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~ 274 (288)
.+++|+.+|||+|++.|+++.+. ......+|.+.+. . ...+=+..|...+|.+++||+...|..++.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~ 69 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGGSDDLEK 69 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeCHHHHHH
Confidence 47899999999999999999874 2344567765442 1 2233234589999999999998877444433
No 89
>PRK10638 glutaredoxin 3; Provisional
Probab=98.43 E-value=7.9e-07 Score=67.90 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
.+++|+.+|||+|++.+.++.+. ......+|++.+. ....++-+..|...+|++++||+.+.|-.++.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~----~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA----AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 48899999999999999999874 2344567776432 113444556789999999999999999877777654
No 90
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.5e-07 Score=72.81 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=53.2
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHhhcc--C--eeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCC
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQ--L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 269 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgkeA~~~--I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~ 269 (288)
+.=++.|+|.||+-|+..+|+|.+.|.+. + -.||++. + .++|++.+|+..||..+ ||+ ++-|.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-----HhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 33356678999999999999999976443 3 3677765 2 58899999999999887 887 46665
Q ss_pred CCHHHHHHHh
Q 023015 270 QDLSDLAKAS 279 (288)
Q Consensus 270 rsLe~La~~s 279 (288)
... +|.+..
T Consensus 94 ~~~-~l~~~i 102 (106)
T KOG0907|consen 94 NKA-ELEKKI 102 (106)
T ss_pred CHH-HHHHHH
Confidence 443 555543
No 91
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.41 E-value=9.1e-07 Score=65.88 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=51.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 278 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~ 278 (288)
+++|+.+|||+|++.++++.+. ...+.++|.+.+. +..+..++.|...+|++++||+.+-|.-+.++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 4799999999999999999873 2234457765432 234555667999999999988744444666887765
No 92
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.36 E-value=3.4e-07 Score=87.98 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=61.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc---c-------CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE----E
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~---~-------I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe----~ 265 (288)
++-|+|.||+--+.++++|.+.|.+ + ...|||+.+ .++..++.|.-|||+++ ||+ .
T Consensus 17 fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~~~rE 88 (375)
T KOG0912|consen 17 FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEMMKRE 88 (375)
T ss_pred eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccchhhhh
Confidence 4556799999999999999986522 1 468999764 58899999999999998 996 6
Q ss_pred ecCCCCHHHHHHHhCCCC
Q 023015 266 LSGEQDLSDLAKASGFPE 283 (288)
Q Consensus 266 y~G~rsLe~La~~sG~~g 283 (288)
|.|.|+.+.|.++...+-
T Consensus 89 YRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hccchhHHHHHHHHHHHh
Confidence 999999999999886653
No 93
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.36 E-value=1.2e-06 Score=71.84 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhh---ccCeeEECCCCCCCCchhhHHhhhhcCCCc--cceeEE-
Q 023015 188 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 261 (288)
Q Consensus 188 ~~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~---~~I~yVEC~~~g~n~~~k~~~lC~~~gI~G--yPTw~I- 261 (288)
..+++.|+.-.+.=++.|+|+||++|+++++.|.+.+. ...++|-.+-+..+. ..-+++++.| +||+.+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEE
Confidence 34556666655555778999999999999998876321 122344333221111 2224678876 999887
Q ss_pred --CCE
Q 023015 262 --NGQ 264 (288)
Q Consensus 262 --nGe 264 (288)
||+
T Consensus 84 ~~~Gk 88 (117)
T cd02959 84 DPSGD 88 (117)
T ss_pred CCCCC
Confidence 665
No 94
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.34 E-value=3.2e-06 Score=72.76 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--c---CeeEECCCCCCCCchhhHHhhhhcCCCccceeE-E--CCE----EecC-
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--Q---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I--NGQ----VLSG- 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~---I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~-I--nGe----~y~G- 268 (288)
++-|+|.||++|+.+.+++.+-|.+ . +-.||.+.+ +++.++++|++.||.+ + ||+ +..|
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~--------~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV--------PDFNTMYELYDPCTVMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC--------HHHHHHcCccCCCcEEEEEECCeEEEEEeccc
Confidence 4568899999999999999886522 2 335666542 5899999999876655 4 887 4577
Q ss_pred -------CCCHHHHHHHh
Q 023015 269 -------EQDLSDLAKAS 279 (288)
Q Consensus 269 -------~rsLe~La~~s 279 (288)
..+.++|.+..
T Consensus 99 ~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 99 NNKINWALKDKQEFIDIV 116 (142)
T ss_pred ccccccccCCHHHHHHHH
Confidence 56777777654
No 95
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-06 Score=70.01 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred HHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCH
Q 023015 193 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 272 (288)
Q Consensus 193 LAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsL 272 (288)
.-+-+.+..+++|...|||.|++.|.+|.+. ......||-+.+.... .-++.+-+-.|.+.+|..+|||+.+.|..++
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~-eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGS-EIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcH-HHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 4556778889999999999999999999883 2344578887764322 2244555567888999999999999999988
Q ss_pred HHHHH
Q 023015 273 SDLAK 277 (288)
Q Consensus 273 e~La~ 277 (288)
.+|.+
T Consensus 85 ~~lh~ 89 (104)
T KOG1752|consen 85 MALHK 89 (104)
T ss_pred HHHHH
Confidence 88764
No 96
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=5.5e-06 Score=69.54 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=57.5
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhh----ccC--eeEECCCCCCCC--------------chhhHHhhhh
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQL--NYVECFPDGYRK--------------GTKIAKACSD 250 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~----~~I--~yVEC~~~g~n~--------------~~k~~~lC~~ 250 (288)
+.+++.-.+.-+.+|.|+|||+|+++.+.|.+.+. ..+ -.|+++.+..+- -....++++.
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 35555333334567779999999998877766431 113 356664321000 0012577899
Q ss_pred cCCCccceeEE---CCE---EecCCCCHHHHHHHh
Q 023015 251 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 251 ~gI~GyPTw~I---nGe---~y~G~rsLe~La~~s 279 (288)
++|+++|+.++ ||+ .+.|..+.++|.++.
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 99999998665 676 579999999988764
No 97
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.29 E-value=3.2e-06 Score=70.56 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=51.1
Q ss_pred eEEEec-------CCCHHHHHHHHHHhHHh--hc-cCeeEECCCCCCC-CchhhHHhhhhcCCC-ccceeEE--CCEEec
Q 023015 202 AKMYGA-------FWCSHCLEQKQMFGSEA--VK-QLNYVECFPDGYR-KGTKIAKACSDAKIE-GFPTWVI--NGQVLS 267 (288)
Q Consensus 202 akmYGA-------pWCpHC~~qK~lFgkeA--~~-~I~yVEC~~~g~n-~~~k~~~lC~~~gI~-GyPTw~I--nGe~y~ 267 (288)
++.|.| +|||+|+.+++.+.+.+ .. ++.++.|+-+... -..+..++-++.+|+ +.||+.+ +|++..
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 667889 99999999999887743 22 3555555433110 000124677789998 9999887 777877
Q ss_pred CCC--CHHHHHHH
Q 023015 268 GEQ--DLSDLAKA 278 (288)
Q Consensus 268 G~r--sLe~La~~ 278 (288)
|.. +-+.|..+
T Consensus 105 ~~~c~~~~~~~~~ 117 (119)
T cd02952 105 EDECLQADLVEMF 117 (119)
T ss_pred chhhcCHHHHHHh
Confidence 776 55555443
No 98
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.4e-06 Score=75.97 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhcc-----CeeEECCCCCCCCchhhHHhhhhcCCCccceeE
Q 023015 186 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 260 (288)
Q Consensus 186 S~~~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~-----I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~ 260 (288)
|...-.++...-...=+++|.|.||+-|+.+.+..++-+.++ +..||-+. ..++..+++|+.+||.+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--------~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--------HPELAEDYEISAVPTVL 120 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--------ccchHhhcceeeeeEEE
Confidence 333333444443444477899999999999999988754332 34555544 35889999999999988
Q ss_pred E--CCE---EecCCCCHHHHHHHh
Q 023015 261 I--NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 261 I--nGe---~y~G~rsLe~La~~s 279 (288)
+ ||+ +..|..+-+.|.++.
T Consensus 121 vfknGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 121 VFKNGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred EEECCEEeeeecccCCHHHHHHHH
Confidence 7 997 578888888887664
No 99
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.27 E-value=3e-06 Score=68.18 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhcc-CeeEECCCCCCCC-----------------chhhHHhhhhcC
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDGYRK-----------------GTKIAKACSDAK 252 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~-I~yVEC~~~g~n~-----------------~~k~~~lC~~~g 252 (288)
+.++..-.+.=+++|.|.|||+|+++.+.+.+.+.+. +..|....+.... -.+..+++++++
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 3444332333466778999999999998887643222 3323222110000 001246788899
Q ss_pred CCccceeE-E--CCE---EecCCCCHHHH
Q 023015 253 IEGFPTWV-I--NGQ---VLSGEQDLSDL 275 (288)
Q Consensus 253 I~GyPTw~-I--nGe---~y~G~rsLe~L 275 (288)
|.++|+.+ | +|+ ++.|..+.++|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 99999644 5 676 57898887765
No 100
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.26 E-value=3.9e-06 Score=73.58 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=49.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--cCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCEE---ecC----
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSG---- 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe~---y~G---- 268 (288)
++.|+|+||+.|+.+.+.|.+.|.+ .+. .|+++. . +++.+++|++.||+.+ ||+. +.|
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--------~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~ 157 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--------T-GASDEFDTDALPALLVYKGGELIGNFVRVTED 157 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--------h-hhHHhCCCCCCCEEEEEECCEEEEEEechHHh
Confidence 5578899999999999999887643 233 555532 2 6778899999999887 8873 222
Q ss_pred ---CCCHHHHHHHh
Q 023015 269 ---EQDLSDLAKAS 279 (288)
Q Consensus 269 ---~rsLe~La~~s 279 (288)
.-+.++|..+.
T Consensus 158 ~g~~f~~~~le~~L 171 (175)
T cd02987 158 LGEDFDAEDLESFL 171 (175)
T ss_pred cCCCCCHHHHHHHH
Confidence 34556666554
No 101
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.25 E-value=3.7e-06 Score=65.10 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=52.2
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHHHh
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~s 279 (288)
.+++|+.+|||+|++.|.++.+. ...+.+||.+.+. +..+..++.|.+..|+++++++.+.|= +.++|.++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~-gI~~~~idi~~~~-----~~~~~~~~~g~~~vPvv~i~~~~~~Gf-~~~~l~~~~ 73 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESR-GFDFEMINVDRVP-----EAAETLRAQGFRQLPVVIAGDLSWSGF-RPDMINRLH 73 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCCCcCEEEECCEEEecC-CHHHHHHHH
Confidence 37899999999999999999763 2233456665431 134445667889999999999877754 557887764
No 102
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.21 E-value=3.9e-06 Score=64.73 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=53.5
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhhc---cCe--eEECCCCCCCCchhhHHhhhhcCCC--ccceeEE--C--CEEe--
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQVL-- 266 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~~---~I~--yVEC~~~g~n~~~k~~~lC~~~gI~--GyPTw~I--n--Ge~y-- 266 (288)
.-+.+|.++||++|+..++.|.+-|.+ ++. +||++. ..++++..||+ ++||+.+ + |++|
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~ 85 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLM 85 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--------hHHHHHHcCCChhhCCEEEEEecccccccCC
Confidence 346788899999999999999886532 344 566643 25789999999 9999887 4 6543
Q ss_pred -cCCCCHHHHHHHh
Q 023015 267 -SGEQDLSDLAKAS 279 (288)
Q Consensus 267 -~G~rsLe~La~~s 279 (288)
.|..+.++|.+|.
T Consensus 86 ~~~~~~~~~l~~fi 99 (103)
T cd02982 86 PEEELTAESLEEFV 99 (103)
T ss_pred CccccCHHHHHHHH
Confidence 3334888888875
No 103
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.19 E-value=6.8e-06 Score=76.78 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc---cCeeEECCCCCCC---CchhhHHhhhhcCCCccceeEE---
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI--- 261 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~---~I~yVEC~~~g~n---~~~k~~~lC~~~gI~GyPTw~I--- 261 (288)
..+++.-.+.++++|+|.|||+|+++.+.+.+-+.+ .+-.|+.+.+... .-.....+.++.||+++||.++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 555555566778889999999999999988764322 2335555432100 0000135678899999999887
Q ss_pred CCE----EecCCCCHHHHHHHh
Q 023015 262 NGQ----VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 nGe----~y~G~rsLe~La~~s 279 (288)
||+ ...|..+.++|.+..
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHH
Confidence 343 356999999988654
No 104
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.19 E-value=3.3e-05 Score=67.35 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=49.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCc-----------------hhhHHhhhhcCCCccce-eEE-
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-WVI- 261 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~-----------------~k~~~lC~~~gI~GyPT-w~I- 261 (288)
-++.|.|.|||+|+++.+.+.+...+.+..|-..-+..... ....++.+++||.++|| .+|
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID 150 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEEC
Confidence 35678899999999999888664333333333221100000 00124556789999996 555
Q ss_pred -CCE---EecCCCCHHHHHHHh
Q 023015 262 -NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 -nGe---~y~G~rsLe~La~~s 279 (288)
||+ ++.|..+.++|.++.
T Consensus 151 ~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 151 GNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred CCceEEEEEecCCCHHHHHHHH
Confidence 676 688998888877653
No 105
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.18 E-value=1.8e-05 Score=68.11 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=48.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCc-----------------hhhHHhhhhcCCCccce-eEE-
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-WVI- 261 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~-----------------~k~~~lC~~~gI~GyPT-w~I- 261 (288)
=+++|+|.|||+|+++.+.+.+-..+.+..|-.+.+..+++ .+..++.+++++.++|+ .+|
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id 145 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVD 145 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEc
Confidence 35577799999999998877654322233222221110000 00124566789999995 555
Q ss_pred -CCE---EecCCCCHHHHHHHh
Q 023015 262 -NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 -nGe---~y~G~rsLe~La~~s 279 (288)
||+ ++.|..+-++|.++.
T Consensus 146 ~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 146 GNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred CCceEEEEEeccCCHHHHHHHH
Confidence 687 578988888887754
No 106
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.16 E-value=7.5e-06 Score=68.52 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=47.8
Q ss_pred CHHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhH-Hhh----ccCeeEECCCCCCCCchh-hHHhhh-hcCCCccce
Q 023015 187 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGS-EAV----KQLNYVECFPDGYRKGTK-IAKACS-DAKIEGFPT 258 (288)
Q Consensus 187 ~~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgk-eA~----~~I~yVEC~~~g~n~~~k-~~~lC~-~~gI~GyPT 258 (288)
++.+++.|+.-.+.=++.|+|.||+.|+.++. .|.. +.. +.+-.|..+.+..++-.+ ..++.+ .+|+.|+||
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 35567777776666677899999999999964 6766 222 233344444332111000 111122 358999999
Q ss_pred eEE---CCEE
Q 023015 259 WVI---NGQV 265 (288)
Q Consensus 259 w~I---nGe~ 265 (288)
+++ +|+.
T Consensus 84 ~vfl~~~G~~ 93 (124)
T cd02955 84 NVFLTPDLKP 93 (124)
T ss_pred EEEECCCCCE
Confidence 888 6763
No 107
>PRK10824 glutaredoxin-4; Provisional
Probab=98.16 E-value=6.7e-06 Score=68.49 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=60.9
Q ss_pred HHHHHhhhcccCeEEEec-----CCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCE
Q 023015 190 ALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 264 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGA-----pWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe 264 (288)
...+.+.++++.+++|.. ||||+|++.|.+|.+. .....++|...+. + -+..+=+..|-+.+|-.+|||+
T Consensus 5 ~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~---~-~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNP---D-IRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCH---H-HHHHHHHHhCCCCCCeEEECCE
Confidence 345667788888999977 6999999999999874 3345577775431 1 1233333468889999999999
Q ss_pred EecCCCCHHHHHH
Q 023015 265 VLSGEQDLSDLAK 277 (288)
Q Consensus 265 ~y~G~rsLe~La~ 277 (288)
.+.|-.++.+|.+
T Consensus 80 ~IGG~ddl~~l~~ 92 (115)
T PRK10824 80 LVGGCDIVIEMYQ 92 (115)
T ss_pred EEcChHHHHHHHH
Confidence 9999888777654
No 108
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.15 E-value=8.2e-06 Score=61.77 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=47.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc-cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCE-EecC-CCCHHHHHHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA 278 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~-~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe-~y~G-~rsLe~La~~ 278 (288)
+++| .++||+|.++.+++.+.+.+ .+ .+|+... .+ ..++ .++||.+.||++|||+ ++.| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i-~~ei~~~-~~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGI-EVEIIDI-ED----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTE-EEEEEET-TT----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCC-eEEEEEc-cC----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 5665 67799999999988774322 22 2243321 11 3455 8999999999999999 6899 8888998887
Q ss_pred h
Q 023015 279 S 279 (288)
Q Consensus 279 s 279 (288)
.
T Consensus 75 l 75 (76)
T PF13192_consen 75 L 75 (76)
T ss_dssp H
T ss_pred h
Confidence 4
No 109
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.11 E-value=1.5e-05 Score=68.84 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHhhc-c--CeeEECCCCCCC--Cch--hhHHhhh-hc---CCCccceeEE---CC
Q 023015 198 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPDGYR--KGT--KIAKACS-DA---KIEGFPTWVI---NG 263 (288)
Q Consensus 198 ~~~gakmYGApWCpHC~~qK~lFgkeA~~-~--I~yVEC~~~g~n--~~~--k~~~lC~-~~---gI~GyPTw~I---nG 263 (288)
.+..++.|+|.|||+|++..+.+.+-+.+ + +-.|+.+.+... +.. ...+... .. +|+++||.++ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 34448899999999999999988774322 2 334554432100 000 0012222 23 8999999776 54
Q ss_pred E----EecCCCCHHHHHHHh
Q 023015 264 Q----VLSGEQDLSDLAKAS 279 (288)
Q Consensus 264 e----~y~G~rsLe~La~~s 279 (288)
+ ++.|..+.++|.+..
T Consensus 130 ~~i~~~~~G~~s~~~l~~~I 149 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANRM 149 (153)
T ss_pred CEEEEEeecccCHHHHHHHH
Confidence 4 468999999987653
No 110
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.09 E-value=9.1e-06 Score=64.57 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhccCee--EECCCCCCCC---------------chhhHHhhhhcCCC
Q 023015 192 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRK---------------GTKIAKACSDAKIE 254 (288)
Q Consensus 192 aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~I~y--VEC~~~g~n~---------------~~k~~~lC~~~gI~ 254 (288)
+++..-.+.-+.+|+|.|||+|+.+.+.+.+.+ +++.. |..+.+...+ ..+..++++.++|.
T Consensus 14 ~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 92 (123)
T cd03011 14 DLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS 92 (123)
T ss_pred eHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC
Confidence 344333344566788999999999988776532 22222 2111110000 00124789999999
Q ss_pred ccceeEE---CCE--EecCCCCHHHHHHH
Q 023015 255 GFPTWVI---NGQ--VLSGEQDLSDLAKA 278 (288)
Q Consensus 255 GyPTw~I---nGe--~y~G~rsLe~La~~ 278 (288)
++||..+ ||. ++.|..+.++|.+.
T Consensus 93 ~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 93 VTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999887 454 47899999998764
No 111
>smart00594 UAS UAS domain.
Probab=98.06 E-value=2.5e-05 Score=64.06 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=66.7
Q ss_pred cccccCCCCHHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhHHhhc-cC--eeE--ECCCCCCCCchhhHHhhhhcC
Q 023015 179 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NYV--ECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 179 ~~~itt~S~~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgkeA~~-~I--~yV--EC~~~g~n~~~k~~~lC~~~g 252 (288)
++.....|=..+++.|++-.+.-++++.++||+.|+++.. .|.....+ .| +|| -++-+.. +..+++...+
T Consensus 8 ~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~----eg~~l~~~~~ 83 (122)
T smart00594 8 GPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS----EGQRVSQFYK 83 (122)
T ss_pred CCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh----hHHHHHHhcC
Confidence 3445555556667777766667788899999999999854 67664322 12 232 3433321 1368899999
Q ss_pred CCccceeEE---CC-E-------EecCCCCHHHHHHHh
Q 023015 253 IEGFPTWVI---NG-Q-------VLSGEQDLSDLAKAS 279 (288)
Q Consensus 253 I~GyPTw~I---nG-e-------~y~G~rsLe~La~~s 279 (288)
+++|||+.+ +| + +++|..+.++|.+..
T Consensus 84 ~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 84 LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999887 54 2 589999999998753
No 112
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.02 E-value=1.5e-05 Score=71.10 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=49.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc--cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecC------
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG------ 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~--~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G------ 268 (288)
++.|+|+||++|+.+.+.|.+.|.+ .+.+|.++-+ +....++|++.||+.+ ||+ ++.|
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 4567799999999999999997643 3556665432 2245789999999887 887 3444
Q ss_pred -CCCHHHHHHHh
Q 023015 269 -EQDLSDLAKAS 279 (288)
Q Consensus 269 -~rsLe~La~~s 279 (288)
..+.++|..+.
T Consensus 177 ~~~~~~~lE~~L 188 (192)
T cd02988 177 MNTTMEDLEWLL 188 (192)
T ss_pred CCCCHHHHHHHH
Confidence 34556666554
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.02 E-value=1.9e-05 Score=65.99 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=43.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhh--cc---CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAV--KQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~--~~---I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe 264 (288)
++-|+|.|||.|+.+.++|.+.|. ++ +-.||.+. .++++++++|+.-||..+ ||+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCceeCcEEEEEECCc
Confidence 557899999999999999998663 23 34566653 368999999999999766 776
No 114
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.98 E-value=3.5e-05 Score=78.47 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=52.1
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhh----ccCeeEECCCCCCC--C--------------------chhhHHhhhhcCCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYR--K--------------------GTKIAKACSDAKIE 254 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~----~~I~yVEC~~~g~n--~--------------------~~k~~~lC~~~gI~ 254 (288)
-++.|.|.|||+|+++.+.+.+.+. +.+..|-...++.+ + -.+..++.+.++|+
T Consensus 59 VvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~ 138 (521)
T PRK14018 59 TLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNIS 138 (521)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCC
Confidence 3567889999999999888866321 12332222100000 0 00124677889999
Q ss_pred ccceeE-E--CCE---EecCCCCHHHHHHHhC
Q 023015 255 GFPTWV-I--NGQ---VLSGEQDLSDLAKASG 280 (288)
Q Consensus 255 GyPTw~-I--nGe---~y~G~rsLe~La~~sG 280 (288)
++||.+ | ||+ ++.|..+.++|.++..
T Consensus 139 giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 139 VYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 999985 4 686 5899999999988765
No 115
>PTZ00062 glutaredoxin; Provisional
Probab=97.98 E-value=2.8e-05 Score=70.42 Aligned_cols=84 Identities=12% Similarity=0.241 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcccCeEEEec-----CCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhh-hcCCCccceeEE
Q 023015 188 PFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI 261 (288)
Q Consensus 188 ~~~~aLAkhL~~~gakmYGA-----pWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~-~~gI~GyPTw~I 261 (288)
.....+.+.++++.+++|.. ||||+|++.|.++.+. ......+|...+ . ..++..+ ..|-+.+|.++|
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-~i~y~~~DI~~d--~---~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-GVKYETYNIFED--P---DLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-CCCEEEEEcCCC--H---HHHHHHHHHhCCCCCCeEEE
Confidence 35567778888888999955 7999999999999874 223334555432 1 1334343 458889999999
Q ss_pred CCEEecCCCCHHHHHH
Q 023015 262 NGQVLSGEQDLSDLAK 277 (288)
Q Consensus 262 nGe~y~G~rsLe~La~ 277 (288)
||+.+.|-.++.+|.+
T Consensus 175 ~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 175 NGELIGGHDIIKELYE 190 (204)
T ss_pred CCEEEcChHHHHHHHH
Confidence 9999999988888765
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.92 E-value=2.3e-05 Score=51.33 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=38.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHH--hhccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEECC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSE--AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 263 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgke--A~~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InG 263 (288)
+.+|++.||+||+++++.+.+. ....+. .++|+.. ++ ..+...+.++..+|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED--PA---LEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC--hH---HhhHHHhCCCccccEEEEEe
Confidence 3578899999999999988863 123344 5555443 21 12223468999999998843
No 117
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.91 E-value=7.3e-05 Score=60.52 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=30.1
Q ss_pred HhhhhcCCCccceeEECCEEecCCCCHHHHHHHh
Q 023015 246 KACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 246 ~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~s 279 (288)
+++++.||.|.||++|||+.+.|..+++.|.+..
T Consensus 120 ~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFIIGDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence 4566789999999999999999999999998764
No 118
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.90 E-value=2.3e-05 Score=77.09 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=49.8
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhh------cCCCccceeEECCEEecCCCCHHH
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD------AKIEGFPTWVINGQVLSGEQDLSD 274 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~------~gI~GyPTw~InGe~y~G~rsLe~ 274 (288)
.+++|+.+|||||++.|.++.+. ......||.+.+. ......+...+ .|.+++|+.+|||+.+.|-.++.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-gi~~~~idi~~~~--~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-DIPFTQISLDDDV--KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEECCCCh--hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 48899999999999999999984 2334467776432 10001111222 478899999999999988877655
No 119
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.89 E-value=6e-05 Score=60.39 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=61.4
Q ss_pred HHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhHHhhc-cC--ee--EECCCCCCCCchhhHHhhhhcCCCccceeEE
Q 023015 188 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 188 ~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgkeA~~-~I--~y--VEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
+.+++.|++=.+.=++++.+.||+.|+.++. .|..+..+ .+ +| +..+.+. .+..++....++++|||+.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~----~e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS----SEGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC----ccHHHHHHHhCccCCCeEEE
Confidence 4566777776666678899999999999964 77664322 22 23 3333322 12467888999999999776
Q ss_pred ----CCE---EecCCCCHHHHHHHh
Q 023015 262 ----NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 262 ----nGe---~y~G~rsLe~La~~s 279 (288)
+|+ ++.|..+.++|.+..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHH
Confidence 465 679999999987654
No 120
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=4.8e-05 Score=76.91 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=65.9
Q ss_pred HHHHHHHhhh-cccCeEEEecCCCHHHHHHHHHHhHHhhc--cC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEEC
Q 023015 188 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 262 (288)
Q Consensus 188 ~~~~aLAkhL-~~~gakmYGApWCpHC~~qK~lFgkeA~~--~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In 262 (288)
+..++..+.| +...+++|-.+|||+|.+..+.+.+-|.. +| ..||.+. ..++.++++|.+.|+.+||
T Consensus 465 ~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 465 EELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEEC
Confidence 3444555555 34568999999999999999888775533 24 3566543 4688889999999999999
Q ss_pred CE-EecCCCCHHHHHHHhC
Q 023015 263 GQ-VLSGEQDLSDLAKASG 280 (288)
Q Consensus 263 Ge-~y~G~rsLe~La~~sG 280 (288)
|+ .+.|..+++++.++.|
T Consensus 537 ~~~~~~G~~~~~~~~~~~~ 555 (555)
T TIGR03143 537 DQQVYFGKKTIEEMLELIG 555 (555)
T ss_pred CEEEEeeCCCHHHHHHhhC
Confidence 97 6899999999999876
No 121
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.88 E-value=3.4e-05 Score=58.03 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHh--h--cc--CeeEECCCC-CCCC--------------chhhHHhhh
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQ--LNYVECFPD-GYRK--------------GTKIAKACS 249 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA--~--~~--I~yVEC~~~-g~n~--------------~~k~~~lC~ 249 (288)
+.+++-..+.-+++|++.||++|+++.+.+.+.. . .. +-.|+++++ ..+- -.+..++.+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK 91 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence 3444333445577889999999999988776632 1 12 346777653 0000 000146788
Q ss_pred hcCCCccceeEE---CCE
Q 023015 250 DAKIEGFPTWVI---NGQ 264 (288)
Q Consensus 250 ~~gI~GyPTw~I---nGe 264 (288)
++++.++|++++ ||+
T Consensus 92 ~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred hcCcCccceEEEECCCCc
Confidence 899999999876 565
No 122
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.87 E-value=2.6e-05 Score=63.15 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHh--h-c---c--CeeEECCCCCCC----------------CchhhHH
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGYR----------------KGTKIAK 246 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA--~-~---~--I~yVEC~~~g~n----------------~~~k~~~ 246 (288)
+.|+..-.+.-+++|+|.||++|+++.+.+.+.. . . . +-.|..+.+..+ .......
T Consensus 11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 4455544455577888999999999988775421 1 1 2 335565433100 0011246
Q ss_pred hhhhcCCCccceeEE---CCEE
Q 023015 247 ACSDAKIEGFPTWVI---NGQV 265 (288)
Q Consensus 247 lC~~~gI~GyPTw~I---nGe~ 265 (288)
++++++|+++||.++ ||+.
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCE
Confidence 788899999999776 6763
No 123
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.84 E-value=2.7e-05 Score=59.23 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHhhhcccCeEEEecCCCHHHHHHHHHH-hHHh-----hccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE
Q 023015 189 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF-GSEA-----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGApWCpHC~~qK~lF-gkeA-----~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
.+++.|+.-.+.-+++|+|.||++|+.+++.+ .... .+++-.|..+-+. + .... . ...+++||+.|
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~--~---~~~~-~-~~~~~~P~~~~ 79 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD--E---DPNA-Q-FDRQGYPTFFF 79 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT--H---HHHH-H-HHHCSSSEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC--C---ChhH-H-hCCccCCEEEE
Confidence 45566666666668899999999999998755 4322 2234344443221 1 1122 2 22278999876
No 124
>PTZ00062 glutaredoxin; Provisional
Probab=97.82 E-value=7.5e-05 Score=67.67 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=50.7
Q ss_pred HHHHhhhccc-C--eEEEecCCCHHHHHHHHHHhHHhh--ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC
Q 023015 191 LSLAKHLHAI-G--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 263 (288)
Q Consensus 191 ~aLAkhL~~~-g--akmYGApWCpHC~~qK~lFgkeA~--~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG 263 (288)
.++.+.++.. | +.+|.|+|||.|+.+++++.+.+. ..+.++..+.+ ++|.++||.++ ||
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------------DANNEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------------cCcccceEEEEEECC
Confidence 3455555522 2 557779999999999999988653 24666666421 79999999887 88
Q ss_pred E---EecCCCCHHHHHHH
Q 023015 264 Q---VLSGEQDLSDLAKA 278 (288)
Q Consensus 264 e---~y~G~rsLe~La~~ 278 (288)
+ ++.|.. ..+|...
T Consensus 73 ~~i~r~~G~~-~~~~~~~ 89 (204)
T PTZ00062 73 QLINSLEGCN-TSTLVSF 89 (204)
T ss_pred EEEeeeeCCC-HHHHHHH
Confidence 7 566654 5555543
No 125
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.66 E-value=0.00011 Score=60.05 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHh----hc--c--CeeEECCCCCC-----------------CCchh
Q 023015 189 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA----VK--Q--LNYVECFPDGY-----------------RKGTK 243 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA----~~--~--I~yVEC~~~g~-----------------n~~~k 243 (288)
..+.|++.-.+.=+++|+|.||++|+++.+.+.+.+ .+ . +-+|..+.+.. .....
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 344555544455566888999999999988775521 11 2 33566654310 00011
Q ss_pred hHHhhhhcCCCccceeEE---CCEE
Q 023015 244 IAKACSDAKIEGFPTWVI---NGQV 265 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw~I---nGe~ 265 (288)
...+-+.++|.++||.++ ||+.
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCE
Confidence 234555689999999876 5653
No 126
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.65 E-value=0.00022 Score=63.83 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=48.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc-cCee--EECCCCCC---C--CchhhHHhhhhcCC--CccceeEE---CCE----
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNY--VECFPDGY---R--KGTKIAKACSDAKI--EGFPTWVI---NGQ---- 264 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~-~I~y--VEC~~~g~---n--~~~k~~~lC~~~gI--~GyPTw~I---nGe---- 264 (288)
+++|.|.|||+|++..+.+.+-+.+ .+.. |..+.++. . -..+...+.+.+++ .++||-++ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 7788899999999998777664322 2332 33332210 0 00012344556784 79999776 775
Q ss_pred EecCCCCHHHHHHH
Q 023015 265 VLSGEQDLSDLAKA 278 (288)
Q Consensus 265 ~y~G~rsLe~La~~ 278 (288)
.+.|..+.++|.+.
T Consensus 153 ~~~G~~~~~~L~~~ 166 (181)
T PRK13728 153 LLQGATDAAGFMAR 166 (181)
T ss_pred EEECCCCHHHHHHH
Confidence 37899998888654
No 127
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.63 E-value=0.00045 Score=71.12 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=60.4
Q ss_pred HHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhHHh----hccC--eeEECCCCCCCCchhhHHhhhhcCCCccceeE
Q 023015 188 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA----VKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 260 (288)
Q Consensus 188 ~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgkeA----~~~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~ 260 (288)
....++|+|-++.=++=|+|.||=.||+.|+ .|.+.. .+.+ =.+|.+.+ +.++.++-++.|+-|.||.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEE
Confidence 4556666665544455567999999999986 675421 1112 25677654 33578889999999999988
Q ss_pred E---CCE---EecCCCCHHHHHHHh
Q 023015 261 I---NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 261 I---nGe---~y~G~rsLe~La~~s 279 (288)
+ +|+ ...|..+-+.+.++.
T Consensus 540 ff~~~g~e~~~l~gf~~a~~~~~~l 564 (569)
T COG4232 540 FFGPQGSEPEILTGFLTADAFLEHL 564 (569)
T ss_pred EECCCCCcCcCCcceecHHHHHHHH
Confidence 7 454 477888877777654
No 128
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.61 E-value=8.7e-05 Score=64.96 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=32.6
Q ss_pred hhHHhhhhcCCCccceeEE-CCEEecCCCCHHHHHHHh
Q 023015 243 KIAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 243 k~~~lC~~~gI~GyPTw~I-nGe~y~G~rsLe~La~~s 279 (288)
+..+++++.||+|.||+++ ||+.+.|..+.++|.++.
T Consensus 160 ~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~L 197 (197)
T cd03020 160 ANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhhC
Confidence 3568899999999999999 799999999999998763
No 129
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.55 E-value=0.00011 Score=57.65 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHhhh-cccCeEEEecCCCHHHHHHHHHHhHHh--h-ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeE
Q 023015 191 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 260 (288)
Q Consensus 191 ~aLAkhL-~~~gakmYGApWCpHC~~qK~lFgkeA--~-~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~ 260 (288)
+.|+... .+.=+++|.|+|||+|+++.+.+.+.+ . .++..|-...+. ..+..+..++.++.+||+..
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~---~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE---KAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC---HHHHHHHHHHhCCCCCcEEe
Confidence 3444443 233356788999999999988876632 1 234444332221 12345667777777777753
No 130
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.55 E-value=0.00029 Score=70.48 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=68.7
Q ss_pred CHHHHHHHhhh-cccCeEEEecCCCHHHHHHHHHHhHHhhc--cC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEE
Q 023015 187 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 187 ~~~~~aLAkhL-~~~gakmYGApWCpHC~~qK~lFgkeA~~--~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
++...+..+.| +.+.+++|..+.||||.+..+.+.+.|.. +| ..||... .+++..+++|.+.|+.++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEE
Confidence 34555666666 46679999999999999999999886543 23 3455432 468889999999999999
Q ss_pred CCE-EecCCCCHHHHHHHhCCC
Q 023015 262 NGQ-VLSGEQDLSDLAKASGFP 282 (288)
Q Consensus 262 nGe-~y~G~rsLe~La~~sG~~ 282 (288)
||+ .+.|..+.++|.+....+
T Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 176 NGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcEEEecCCCHHHHHHHHhcc
Confidence 987 589999999999887654
No 131
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=9.9e-05 Score=69.60 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=50.6
Q ss_pred HHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhcc----CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--C
Q 023015 189 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 262 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~----I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--n 262 (288)
+..+|++.=.+.-++-|.|.||+-|++..++|...+.++ +-+||.+. .+......||...||+++ |
T Consensus 12 f~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~--------c~~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 12 FQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE--------CRGTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred HHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH--------hhchhhhcCcccCceEEEEec
Confidence 444554443333355677999999999999999976554 23566542 345556789999999887 9
Q ss_pred CEE---ecCC
Q 023015 263 GQV---LSGE 269 (288)
Q Consensus 263 Ge~---y~G~ 269 (288)
|++ ++|.
T Consensus 84 g~kid~~qGA 93 (288)
T KOG0908|consen 84 GVKIDQIQGA 93 (288)
T ss_pred CeEeeeecCC
Confidence 974 5664
No 132
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.51 E-value=0.00049 Score=58.59 Aligned_cols=36 Identities=17% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhHH
Q 023015 188 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSE 223 (288)
Q Consensus 188 ~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgke 223 (288)
+.+++.|+.-.+.=+++|++.||++|+.++. .|...
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~ 49 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHK 49 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCH
Confidence 4566666666666677899999999999987 56553
No 133
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.35 E-value=0.00073 Score=49.80 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=44.4
Q ss_pred EEEecCCCHHHHHHHHHHhHHh---hc--cCeeEECCCCCCC--Cc----------------------hhhHHhhhhcCC
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYR--KG----------------------TKIAKACSDAKI 253 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA---~~--~I~yVEC~~~g~n--~~----------------------~k~~~lC~~~gI 253 (288)
.+|..+.||||++..+.+.+.. .. ++.++.....+.+ .. -+..++.++.|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999998887641 11 2445555443321 00 012345567899
Q ss_pred CccceeEECCEEecCC
Q 023015 254 EGFPTWVINGQVLSGE 269 (288)
Q Consensus 254 ~GyPTw~InGe~y~G~ 269 (288)
.|.||+++||++|.|.
T Consensus 82 ~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 82 TGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCEEEECCEEcCCC
Confidence 9999999999777664
No 134
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.34 E-value=5.9e-05 Score=70.25 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=55.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh------hccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--EecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA------~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~y~G~rs 271 (288)
+.||+|||||.|++.++.|..-| ..++.|||.+-+- -+--.+=|...||+.- +|+ +|+|.|+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np--------gLsGRF~vtaLptIYHvkDGeFrrysgaRd 114 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP--------GLSGRFLVTALPTIYHVKDGEFRRYSGARD 114 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc--------ccceeeEEEecceEEEeeccccccccCccc
Confidence 56899999999999999998754 2357899997641 2323467788999774 897 7999999
Q ss_pred HHHHHHHhCCC
Q 023015 272 LSDLAKASGFP 282 (288)
Q Consensus 272 Le~La~~sG~~ 282 (288)
-+++-.+.-++
T Consensus 115 k~dfisf~~~r 125 (248)
T KOG0913|consen 115 KNDFISFEEHR 125 (248)
T ss_pred chhHHHHHHhh
Confidence 98887766554
No 135
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.33 E-value=0.00049 Score=52.43 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=35.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--hc---cC--eeEECCCCCC--------C---------CchhhHHhhhhcCCCccc
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGY--------R---------KGTKIAKACSDAKIEGFP 257 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~~---~I--~yVEC~~~g~--------n---------~~~k~~~lC~~~gI~GyP 257 (288)
+.+|+|+||++|++.-+.+.+.. .+ ++ -+|.++.+.. + ......++-+..+|+++|
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 56888999999999876654421 12 22 2555543200 0 001234566677888888
Q ss_pred eeEE---CCE
Q 023015 258 TWVI---NGQ 264 (288)
Q Consensus 258 Tw~I---nGe 264 (288)
|.++ ||+
T Consensus 85 ~~~lld~~G~ 94 (95)
T PF13905_consen 85 TLVLLDPDGK 94 (95)
T ss_dssp EEEEEETTSB
T ss_pred EEEEECCCCC
Confidence 8776 554
No 136
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.25 E-value=0.0006 Score=59.00 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=49.7
Q ss_pred eEEEecC------CCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC----CccceeEECCEEecCCCC
Q 023015 202 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD 271 (288)
Q Consensus 202 akmYGAp------WCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI----~GyPTw~InGe~y~G~rs 271 (288)
+++|..+ +||+|++.|++|.+. ...+..+|.+.+.. -+.++-+..+- ..+|.++|||+.+.|..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~----~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSG----FREELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHH----HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 6899999 999999999999874 23344555543311 12233233343 789999999999999888
Q ss_pred HHHHHH
Q 023015 272 LSDLAK 277 (288)
Q Consensus 272 Le~La~ 277 (288)
+.+|.+
T Consensus 77 l~~L~e 82 (147)
T cd03031 77 VLRLNE 82 (147)
T ss_pred HHHHHH
Confidence 877754
No 137
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.25 E-value=0.0017 Score=56.97 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=44.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhc-c--CeeEECCCCC----------CC--CchhhHHhhhhcCCCccceeEE---CC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPDG----------YR--KGTKIAKACSDAKIEGFPTWVI---NG 263 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~-~--I~yVEC~~~g----------~n--~~~k~~~lC~~~gI~GyPTw~I---nG 263 (288)
+++|.|.|||.|+++.+.+.+...+ . +-.|..+... .+ .-....++.+++++.+.|+-++ ||
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G 157 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDG 157 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCC
Confidence 5578899999999998777653211 2 2234321000 00 0000235677889999998665 67
Q ss_pred E-EecCC-CCHHHHHHHh
Q 023015 264 Q-VLSGE-QDLSDLAKAS 279 (288)
Q Consensus 264 e-~y~G~-rsLe~La~~s 279 (288)
+ ++.|. ..-+++.++.
T Consensus 158 ~I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 158 KIRAKGLTNTREHLESLL 175 (189)
T ss_pred eEEEccCCCCHHHHHHHH
Confidence 6 45664 4445555554
No 138
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.12 E-value=0.0016 Score=65.30 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=66.5
Q ss_pred HHHHHHHhhh-cccCeEEEecCCCHHHHHHHHHHhHHhhc--cC--eeEECCCCCCCCchhhHHhhhhcCCCccceeEEC
Q 023015 188 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 262 (288)
Q Consensus 188 ~~~~aLAkhL-~~~gakmYGApWCpHC~~qK~lFgkeA~~--~I--~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In 262 (288)
+..++..+.| +...+++|..+-||||.+..+.+.+.+.. +| ..||... +.++..+++|.+.|+.+||
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL--------FQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh--------CHHHHHhcCCcccCEEEEC
Confidence 4455666666 46679999999999999999999886543 23 2444432 4688899999999999999
Q ss_pred CE-EecCCCCHHHHHHHhCC
Q 023015 263 GQ-VLSGEQDLSDLAKASGF 281 (288)
Q Consensus 263 Ge-~y~G~rsLe~La~~sG~ 281 (288)
|+ .+.|..+.+++.+..+-
T Consensus 178 ~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 178 GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred CcEEEecCCCHHHHHHHHhh
Confidence 87 58999999999877653
No 139
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.07 E-value=0.0015 Score=71.43 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHhh----ccCeeEECCC---CCCCCc------------------hhhHHhhhhcCCC
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFP---DGYRKG------------------TKIAKACSDAKIE 254 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgkeA~----~~I~yVEC~~---~g~n~~------------------~k~~~lC~~~gI~ 254 (288)
.=++.|.|.|||+|++..+.+.+... +.+..|.+.- |..+.. ....++.++++|+
T Consensus 422 ~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~ 501 (1057)
T PLN02919 422 VVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVS 501 (1057)
T ss_pred EEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCC
Confidence 33567889999999999888866321 1244444420 100000 0123456688999
Q ss_pred ccceeEE---CCE---EecCCCCHHHHHHHh
Q 023015 255 GFPTWVI---NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 255 GyPTw~I---nGe---~y~G~rsLe~La~~s 279 (288)
++||.++ ||+ ++.|+...++|.++.
T Consensus 502 ~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 502 SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred ccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 9999776 676 588988877766554
No 140
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.95 E-value=0.0026 Score=46.35 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=44.3
Q ss_pred EecCCCHHHHHHHHHHhHHhhc---cCeeEECCCCCCCCchhhHHhhhhcC--CCccceeEE--CCE---EecC--CCCH
Q 023015 205 YGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG--EQDL 272 (288)
Q Consensus 205 YGApWCpHC~~qK~lFgkeA~~---~I~yVEC~~~g~n~~~k~~~lC~~~g--I~GyPTw~I--nGe---~y~G--~rsL 272 (288)
|+++|||+|+..++.+.+.+.+ .+.++.++.... .++.....+ +..+|+..+ |++ .+.+ ....
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 113 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPK 113 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCCH
Confidence 3599999999999988774322 245555543211 245666677 899999875 664 2444 4555
Q ss_pred HHHHHHhC
Q 023015 273 SDLAKASG 280 (288)
Q Consensus 273 e~La~~sG 280 (288)
..+....+
T Consensus 114 ~~~~~~~~ 121 (127)
T COG0526 114 EALIDALG 121 (127)
T ss_pred HHHHHHhc
Confidence 55544433
No 141
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.92 E-value=0.0026 Score=52.10 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHhhhcccCeEEEecC-CCHHHHHHHHHHhHHh----hccCeeEECCCCCCCCc---------------hhhHHhh
Q 023015 189 FALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKAC 248 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGAp-WCpHC~~qK~lFgkeA----~~~I~yVEC~~~g~n~~---------------~k~~~lC 248 (288)
....|++.-.+.-+++|.|. |||+|+++.+.+.+.+ .+.+.+|-+..+..... .....+.
T Consensus 19 ~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (146)
T PF08534_consen 19 KPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA 98 (146)
T ss_dssp EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH
T ss_pred CEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH
Confidence 34456662233336677788 9999999988766632 12244444432211100 0123566
Q ss_pred hhcCCC---------ccceeEE---CCE---EecCCCC--HHHHHH
Q 023015 249 SDAKIE---------GFPTWVI---NGQ---VLSGEQD--LSDLAK 277 (288)
Q Consensus 249 ~~~gI~---------GyPTw~I---nGe---~y~G~rs--Le~La~ 277 (288)
++.++. ++|++++ ||+ ++.|..+ ..++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 99 KALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp HHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred HHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 678888 9999876 787 3556655 445544
No 142
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.91 E-value=0.0049 Score=56.38 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred hhHHhhhhcCCCccceeEE-CCEEecCCCCHHHHHHHhC
Q 023015 243 KIAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG 280 (288)
Q Consensus 243 k~~~lC~~~gI~GyPTw~I-nGe~y~G~rsLe~La~~sG 280 (288)
++.+++++.||+|.||+++ ||+.+.|.++.++|.++..
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 3678899999999999999 9999999999999998864
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.81 E-value=0.0074 Score=54.84 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.5
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc-cC--eeEECCCCCC-----CCchhhHHhhhhcCCCccceeEE
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QL--NYVECFPDGY-----RKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~-~I--~yVEC~~~g~-----n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
...|.+.=.+.|..||+...||+|+.|.++...-+.+ .+ -+|..| |. .+......+.++.||+.+|++++
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D--G~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD--GRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC--CCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 3344444466788899999999999999987654322 23 355554 21 00001246777899999999887
Q ss_pred ---CC-E---EecCCCCHHHHHHH
Q 023015 262 ---NG-Q---VLSGEQDLSDLAKA 278 (288)
Q Consensus 262 ---nG-e---~y~G~rsLe~La~~ 278 (288)
++ + .-.|..++++|.+-
T Consensus 190 v~~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 190 VNPNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred EECCCCeEEEEeeecCCHHHHHHh
Confidence 44 4 35899999999863
No 144
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.58 E-value=0.0059 Score=52.64 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=18.8
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhH
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgk 222 (288)
+.=++.|+|.|||-|++..+.+.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHH
Confidence 344567889999999999877644
No 145
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.56 E-value=0.0071 Score=48.90 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=22.3
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgk 222 (288)
+.|++.-.+.-+.+|.|.|||.|+++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 45555433344667789999999999776655
No 146
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.30 E-value=0.0039 Score=54.95 Aligned_cols=66 Identities=21% Similarity=0.448 Sum_probs=42.5
Q ss_pred ccCeEEEecCCCHHHHHH----HHHHhHHhhc----cCeeEECCCCCCC-----------------CchhhHHhhhhcCC
Q 023015 199 AIGAKMYGAFWCSHCLEQ----KQMFGSEAVK----QLNYVECFPDGYR-----------------KGTKIAKACSDAKI 253 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~q----K~lFgkeA~~----~I~yVEC~~~g~n-----------------~~~k~~~lC~~~gI 253 (288)
++...+|+|.|||-|++. |++|.+.... .|-+|.=+.+... .+...++++++++|
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 445668999999999987 6666553211 1224443322110 01235688899999
Q ss_pred CccceeEE---CCE
Q 023015 254 EGFPTWVI---NGQ 264 (288)
Q Consensus 254 ~GyPTw~I---nGe 264 (288)
++.|++++ ||.
T Consensus 114 ~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 114 KGIPALVILKPDGT 127 (157)
T ss_pred CcCceeEEecCCCC
Confidence 99999998 674
No 147
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.15 E-value=0.016 Score=48.70 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=22.2
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgk 222 (288)
++|++.-.+.=+++|.|.||| |..+.+.+.+
T Consensus 15 v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 15 VSLSKYKGKVLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EeHHHhCCCEEEEEEEcCCCC-chHHHHHHHH
Confidence 456665444445678899999 9998777665
No 148
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.90 E-value=0.004 Score=52.36 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=30.8
Q ss_pred ecCCCHHHHHHHHHHhHH---hhccCeeEECCCCCCCC-chhhHHhhh---hcCCCccceeEE--CCEEecCC
Q 023015 206 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRK-GTKIAKACS---DAKIEGFPTWVI--NGQVLSGE 269 (288)
Q Consensus 206 GApWCpHC~~qK~lFgke---A~~~I~yVEC~~~g~n~-~~k~~~lC~---~~gI~GyPTw~I--nGe~y~G~ 269 (288)
|-+|||+|.+.+++..+. +.+...+|.|.-..+.. ..+ ....+ +.++++.||++. ++++..+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp-~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDP-NNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-T-TSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCC-CCCceEcceeeeeecceEEEECCCCccchh
Confidence 457999999999876652 22334455553211100 000 11233 389999999886 44555443
No 149
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.86 E-value=0.01 Score=48.80 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=31.1
Q ss_pred hHHhhhhcCCCccceeEECCEEecCCCCHHHHHHHh
Q 023015 244 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 279 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~s 279 (288)
..+.+++.||++.||++|||+.+.|..++++|.++.
T Consensus 125 ~~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 345678899999999999999999999999999875
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.79 E-value=0.0078 Score=50.66 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCHHHHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhh----ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE
Q 023015 186 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 186 S~~~~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~----~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
|.+...+++..-+...+..+..+|||+|.+.-+.|.|-|. .++.++-=+. |.. -..+.. ..|.+..||+++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~e-l~~~~l-t~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NKE-LMDQYL-TNGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHH-HTTTTT-T-SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---Chh-HHHHHH-hCCCeecCEEEE
Confidence 3444556666666677889999999999999999988431 1244553322 110 112222 379999999998
Q ss_pred ---CCEE--ecCCCC
Q 023015 262 ---NGQV--LSGEQD 271 (288)
Q Consensus 262 ---nGe~--y~G~rs 271 (288)
+|+. .=|+|.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 4553 245554
No 151
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.65 E-value=0.023 Score=48.71 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhHHh--h----ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCCHHHHHH
Q 023015 209 WCSHCLEQKQMFGSEA--V----KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSDLAK 277 (288)
Q Consensus 209 WCpHC~~qK~lFgkeA--~----~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rsLe~La~ 277 (288)
-+|.+-+..-+..+.+ + -++.+||.+.+ .++..++||+++||+.+ ||+ ++.|.++-++|.+
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~--------~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~ 118 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS--------EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELIN 118 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCC--------HHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHH
Confidence 3455555544444422 1 12556777643 68999999999999887 998 6899999999987
Q ss_pred HhC
Q 023015 278 ASG 280 (288)
Q Consensus 278 ~sG 280 (288)
+..
T Consensus 119 ~I~ 121 (132)
T PRK11509 119 LMR 121 (132)
T ss_pred HHH
Confidence 654
No 152
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.59 E-value=0.047 Score=39.94 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=39.3
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC-CEEe
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 266 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In-Ge~y 266 (288)
++|+.+|||+|.+.+-.+.+. ...+..++.+... + ..+.-+.......|+++.+ |+..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcEE
Confidence 689999999999999887662 2345566665432 1 1233344577789999995 7653
No 153
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.50 E-value=0.052 Score=37.16 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=41.3
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecC
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 268 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G 268 (288)
++|+.++||+|.+.+.++... ......++++.+.... .++=+..+-..+|++..+|+.+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~e 62 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLTE 62 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEEc
Confidence 689999999999999888763 2345567776532111 122234577789999999876543
No 154
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.48 E-value=0.046 Score=48.75 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=22.1
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lFgk 222 (288)
+.|++.-.+.=++.|.|.|||.|++..+.+.+
T Consensus 32 vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 32 VPMSSLKNKVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence 45555433444668899999999987666655
No 155
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=94.99 E-value=0.066 Score=48.04 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=55.4
Q ss_pred HHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhccCe--------eEECCCCCC-------------CCc--------hh
Q 023015 193 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--------YVECFPDGY-------------RKG--------TK 243 (288)
Q Consensus 193 LAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~~I~--------yVEC~~~g~-------------n~~--------~k 243 (288)
.++-.-++-++-|.|-||+.|+.-.+++.+-+.++++ -|+-+.+-. +.+ .+
T Consensus 54 ~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 54 SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred HHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 3333466667889999999999999988775433333 244322100 000 01
Q ss_pred hHHhhhhcCCCcccee--EE--CCE---EecCCCCHHHHHHHh
Q 023015 244 IAKACSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS 279 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw--~I--nGe---~y~G~rsLe~La~~s 279 (288)
......++|++++|+- +| +|+ ++.|..+.+++.++.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2244568999999765 45 676 799999988887754
No 156
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.052 Score=48.56 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=53.3
Q ss_pred eEEEecCCCHHHHHHHH-HHhHH----hhcc-Cee--EECC---C----CC-CCCchhhHHhhhhcCCCccceeEE---C
Q 023015 202 AKMYGAFWCSHCLEQKQ-MFGSE----AVKQ-LNY--VECF---P----DG-YRKGTKIAKACSDAKIEGFPTWVI---N 262 (288)
Q Consensus 202 akmYGApWCpHC~~qK~-lFgke----A~~~-I~y--VEC~---~----~g-~n~~~k~~~lC~~~gI~GyPTw~I---n 262 (288)
..||+.+-|+.|.++|. +|.+. +.+. +.. ++.. + .| .+.-.+.+++.+..+|+++||+++ +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 56999999999999975 55442 2111 222 2221 1 11 112233569999999999999988 5
Q ss_pred CE---EecCCCCHHHHHHHhCCC
Q 023015 263 GQ---VLSGEQDLSDLAKASGFP 282 (288)
Q Consensus 263 Ge---~y~G~rsLe~La~~sG~~ 282 (288)
|+ .++|=...++......|-
T Consensus 126 Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 126 GKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred CCEEEecCCCCCHHHHHHHHHHH
Confidence 55 468888888887776653
No 157
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.82 E-value=0.098 Score=44.41 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=40.2
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHh--h--ccCeeEECCCCCCC-----Cch------------------hhHHhhhhc
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYR-----KGT------------------KIAKACSDA 251 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgkeA--~--~~I~yVEC~~~g~n-----~~~------------------k~~~lC~~~ 251 (288)
+.-+.+|.+.|||+|.++.+.+.+.. . +++.+|=...+..+ ... ...++.+..
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 105 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAY 105 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHc
Confidence 33466888999999998876665532 1 23444443322110 000 123456678
Q ss_pred CCCccceeEE---CCE-Eec
Q 023015 252 KIEGFPTWVI---NGQ-VLS 267 (288)
Q Consensus 252 gI~GyPTw~I---nGe-~y~ 267 (288)
+|...|+.+| ||+ +|.
T Consensus 106 ~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 106 GAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred CCCcCCcEEEECCCCeEEEe
Confidence 9999998776 666 344
No 158
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=94.82 E-value=0.039 Score=46.89 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.3
Q ss_pred HHhhhhcCCCccceeEECCEEecCCCCHHHHHHHhC
Q 023015 245 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 280 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~sG 280 (288)
.+...+.||.|.||++|||+.+-|.+.++.|++..+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence 345667899999999999999999999999988754
No 159
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.81 E-value=0.049 Score=42.77 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHhhhcccCeEEEecC-CCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGAp-WCpHC~~qK~lFgk 222 (288)
+.|++.-.+.-+.+|.+. |||+|+++-+.+.+
T Consensus 18 ~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 18 VSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 455555444445666677 99999988766655
No 160
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.79 E-value=0.088 Score=42.45 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=45.6
Q ss_pred HHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhHHh----hccCeeEECCCCCCCCc---------------hhhHHhhhh
Q 023015 191 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKACSD 250 (288)
Q Consensus 191 ~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgkeA----~~~I~yVEC~~~g~n~~---------------~k~~~lC~~ 250 (288)
+.+++.-.+.-+.+|+ +.|||.|..+.+.+.+.. .+.+..|-+..+...+- ....++.++
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 3444433334455665 689999998866554421 11233333322211000 001355666
Q ss_pred cCCCcc---------ceeEE---CCE---EecCCCCHHHHHHH
Q 023015 251 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA 278 (288)
Q Consensus 251 ~gI~Gy---------PTw~I---nGe---~y~G~rsLe~La~~ 278 (288)
+|+... |+.++ ||+ .+.|...-+++.+.
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 777777 77655 565 46776666665553
No 161
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.72 E-value=0.18 Score=47.29 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=53.8
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHhh-ccCeeEECCCCCCCC-----chhhHHhhhhcCCCccceeEE---C-CE---
Q 023015 198 HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYRK-----GTKIAKACSDAKIEGFPTWVI---N-GQ--- 264 (288)
Q Consensus 198 ~~~gakmYGApWCpHC~~qK~lFgkeA~-~~I~yVEC~~~g~n~-----~~k~~~lC~~~gI~GyPTw~I---n-Ge--- 264 (288)
++.|..||+..-||+|++|.+....-+. -.|..+....||... ........++.||+-+|++++ + ++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 5578899999999999999987765332 235544444343211 011123456899999999887 3 34
Q ss_pred EecCCCCHHHHHHH
Q 023015 265 VLSGEQDLSDLAKA 278 (288)
Q Consensus 265 ~y~G~rsLe~La~~ 278 (288)
.-.|..+.++|.+-
T Consensus 223 v~~G~iS~deL~~R 236 (248)
T PRK13703 223 LSYGFITQDDLAKR 236 (248)
T ss_pred EeeccCCHHHHHHH
Confidence 24799999999753
No 162
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.49 E-value=0.078 Score=42.09 Aligned_cols=49 Identities=8% Similarity=0.181 Sum_probs=33.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++|+.++||.|++.+.+|.+. ...+.++|-..+... .++..++..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~-~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKEPPT-KEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCCCC-HHHHHHHHHhcC
Confidence 4799999999999999999874 334566776554322 233555555444
No 163
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.45 E-value=0.22 Score=41.71 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHhhhcccCeEEEecCCCHHHHHHHHHH
Q 023015 191 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMF 220 (288)
Q Consensus 191 ~aLAkhL~~~gakmYGApWCpHC~~qK~lF 220 (288)
+.|++.-.+.=+++|.|.|||.|++..+.+
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRAL 44 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHH
Confidence 456665444335688899999998876543
No 164
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.38 E-value=0.06 Score=43.69 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=33.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++|+.|||+.|++.+..+.+. ...+.++|-..+.... .+..++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~s~-~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGLDA-ATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence 4799999999999999999773 3344455554443222 34667777666
No 165
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.30 E-value=0.082 Score=42.96 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=32.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 253 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI 253 (288)
+++|+-++||+|++.+.++.+. ...+.++|-..+... ..+..+++.+.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~-~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEEPPS-KEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCCccc-HHHHHHHHHHcCC
Confidence 4799999999999999999874 223445665444322 1234555555553
No 166
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.27 E-value=0.077 Score=47.01 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=40.2
Q ss_pred CHHHHHHHhhhcccCeEEEecCCCHHHHHHHH-HHhHHh-hccC--eeEECCCCCCCCchhhHHhhhh--------cCCC
Q 023015 187 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA-VKQL--NYVECFPDGYRKGTKIAKACSD--------AKIE 254 (288)
Q Consensus 187 ~~~~~aLAkhL~~~gakmYGApWCpHC~~qK~-lFgkeA-~~~I--~yVEC~~~g~n~~~k~~~lC~~--------~gI~ 254 (288)
++.+++.|+.-.+.=++..|+.||.-||.+.. .|.... .+.| +||.+--|. ++ ..++-.. .|..
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr-ee---~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR-EE---RPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET-TT----HHHHHHHHHHHHHHHS--
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc-cc---CccHHHHHHHHHHHhcCCC
Confidence 45788899988888888999999999999974 776532 2223 244442221 11 2333222 3889
Q ss_pred ccceeEE---CCE
Q 023015 255 GFPTWVI---NGQ 264 (288)
Q Consensus 255 GyPTw~I---nGe 264 (288)
|+|+-++ +|+
T Consensus 102 GwPl~vfltPdg~ 114 (163)
T PF03190_consen 102 GWPLTVFLTPDGK 114 (163)
T ss_dssp -SSEEEEE-TTS-
T ss_pred CCCceEEECCCCC
Confidence 9999666 776
No 167
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.25 E-value=0.12 Score=37.50 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=38.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC-CEEecCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLSGE 269 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In-Ge~y~G~ 269 (288)
++.|+.++||+|++.+.++... ...+..++.+.+. . ...-+..+-...|+++++ |+...+.
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~----~~~~~~~~~~~vP~L~~~~~~~l~es 62 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E----ATPIRMIGAKQVPILEKDDGSFMAES 62 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h----HHHHHhcCCCccCEEEeCCCeEeehH
Confidence 3679999999999999988763 2233455554321 1 111233445679999986 6654443
No 168
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.23 E-value=0.25 Score=46.52 Aligned_cols=87 Identities=7% Similarity=0.024 Sum_probs=55.4
Q ss_pred HHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc-cCe--eEECCCCCC---CCchhhHHhhhhcCCCccceeEE---C
Q 023015 192 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI---N 262 (288)
Q Consensus 192 aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~-~I~--yVEC~~~g~---n~~~k~~~lC~~~gI~GyPTw~I---n 262 (288)
+|.+.=++.|..||+..-||+|+++.+....-+.+ .|. .|..|..+. .+......+.++.||+-+|++++ +
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 33333356788899999999999999876543221 244 444432210 00001134577889999999887 4
Q ss_pred -CE---EecCCCCHHHHHHH
Q 023015 263 -GQ---VLSGEQDLSDLAKA 278 (288)
Q Consensus 263 -Ge---~y~G~rsLe~La~~ 278 (288)
++ .-.|..+.++|.+-
T Consensus 224 t~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKER 243 (256)
T ss_pred CCcEEEEeeccCCHHHHHHH
Confidence 33 24899999999753
No 169
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.04 E-value=0.16 Score=36.24 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=38.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE-CCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-nGe~ 265 (288)
.++|+.+|||+|++.+-++... ......++++...... +..+.-+...-...|++++ ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCCE
Confidence 3789999999999999988763 2234456665321111 1223334456667899998 5543
No 170
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.92 E-value=0.32 Score=45.11 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=23.3
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhH
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgk 222 (288)
.+.|++.-.+.-++.|.|.|||.|..+.+.+.+
T Consensus 91 ~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 91 DVALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 456666544444667889999999987766654
No 171
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=93.92 E-value=0.074 Score=45.10 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.9
Q ss_pred HHhhhhcCCCccceeEECCE-EecCCCCHHHHHHHh
Q 023015 245 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 279 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~InGe-~y~G~rsLe~La~~s 279 (288)
.+...+.||.|.||++|||+ .+.|.+.+++|.+..
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 45567899999999999999 899999999998764
No 172
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.91 E-value=0.24 Score=35.84 Aligned_cols=61 Identities=18% Similarity=-0.020 Sum_probs=39.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~ 265 (288)
+++|+.++||+|++.+-++... ......++++... +..+..++-+...-...|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 4789999999999988877653 2345566665421 11112344444556679999888754
No 173
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.90 E-value=0.32 Score=40.20 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHHHHhhhcccCeEEEecC----CCHHHHHHHHHHhHHhhc-----cCeeEECCCCCCCCchhhHHhhhhcCCCcccee
Q 023015 189 FALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 259 (288)
Q Consensus 189 ~~~aLAkhL~~~gakmYGAp----WCpHC~~qK~lFgkeA~~-----~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw 259 (288)
.+++.||+=.+.-++++..+ ||.-|+ +.|..+... .+-.+-++-+.. +-.+++...++++||++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~~----eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAKP----EGYRVSQALRERTYPFL 80 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCCh----HHHHHHHHhCCCCCCEE
Confidence 45556665555556677788 888884 445443211 122333433321 13678999999999998
Q ss_pred EE----CCE-----EecCCCCHHHHHHHh
Q 023015 260 VI----NGQ-----VLSGEQDLSDLAKAS 279 (288)
Q Consensus 260 ~I----nGe-----~y~G~rsLe~La~~s 279 (288)
.+ +++ +++|..+.++|.+..
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L 109 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRL 109 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHH
Confidence 76 443 699999999998765
No 174
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.84 E-value=0.094 Score=42.76 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=40.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE-CCEEecC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG 268 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-nGe~y~G 268 (288)
+++|+-++||+|++.+.++.+. ...+.+||...+... .++..++.+..|. ++=.++- +|+.|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~-~~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGPT-REELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChhh-HHHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 4789999999999999999874 334556776544322 2335555666663 2222332 6666554
No 175
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.49 Score=44.53 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=46.4
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHHhhc------cCeeEECCCCCCCCchhhHHhhhhcCC------Cccc
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKI------EGFP 257 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgkeA~~------~I~yVEC~~~g~n~~~k~~~lC~~~gI------~GyP 257 (288)
..+|++.=+..=.+.|.|-|-|.|.+..+.|.+...+ ++..||... ..+..++++| +-.|
T Consensus 136 deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 136 DEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred HHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCC
Confidence 4456655555556777799999999999999885432 356888753 2344555555 4589
Q ss_pred eeEE--CCE
Q 023015 258 TWVI--NGQ 264 (288)
Q Consensus 258 Tw~I--nGe 264 (288)
|.++ +|+
T Consensus 208 T~ilFq~gk 216 (265)
T KOG0914|consen 208 TYILFQKGK 216 (265)
T ss_pred eEEEEccch
Confidence 9887 665
No 176
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.18 E-value=0.19 Score=46.59 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHhhhhcCCCccceeEE-C--CE--EecCCCCHHHHHHHhCC
Q 023015 245 AKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASGF 281 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~I-n--Ge--~y~G~rsLe~La~~sG~ 281 (288)
.++.++.||+|.||+++ | |+ ...|-.+.++|.++.|-
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 45677899999999998 5 65 68999999999999873
No 177
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.13 E-value=0.18 Score=40.77 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHhhhcccC--eEEEecCCCHHHHHHHHHHhHHh--h--ccCeeEECCCCCCCCchhhHHhhhhcCCCccce
Q 023015 191 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 258 (288)
Q Consensus 191 ~aLAkhL~~~g--akmYGApWCpHC~~qK~lFgkeA--~--~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPT 258 (288)
+.+.+...... +.+|.+.|||.|+++.+.+.+.. . ..+..|-+..+... ...+..++.++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 34444443222 34556999999999987776532 1 23555555443211 13345555665 4664
No 178
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.07 E-value=0.41 Score=35.17 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 262 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In 262 (288)
+++|+.+.||.|++.+..+... ......++.++. + ..++ +..+-...|+++++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-GIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-CCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 6789999999999999887663 122334554332 1 1222 44677789999986
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.91 E-value=0.8 Score=34.96 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=52.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh-hc--cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECC-------EEecCCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA-VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD 271 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA-~~--~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InG-------e~y~G~rs 271 (288)
+.+|+-+-|+=|.+.+++..+-+ .. .+..||.+.| .++-.+++. ..|-+.++| +...+.-+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 57999999999999999998632 12 3678898743 356778885 699999977 57888889
Q ss_pred HHHHHHHh
Q 023015 272 LSDLAKAS 279 (288)
Q Consensus 272 Le~La~~s 279 (288)
.++|.++.
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 180
>PLN02412 probable glutathione peroxidase
Probab=92.65 E-value=0.48 Score=40.76 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=20.4
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhH
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgk 222 (288)
.+.|+..-.+.=+++|.|.|||.|+++.+.+.+
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 345554423333456779999999976554443
No 181
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=92.28 E-value=0.72 Score=33.16 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=37.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEe
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 266 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y 266 (288)
+++|+.++||.|++.+-++... ......++-+.. ++ ..+.-+...-...|+++.+|...
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~l 59 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLVL 59 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEEE
Confidence 4689999999999999988663 222334444432 11 12333445667899998877543
No 182
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=0.1 Score=44.61 Aligned_cols=54 Identities=17% Similarity=0.396 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhHH---hhccCeeEECCCCCCCC-chhhHHhhhhcCC-CccceeEE
Q 023015 208 FWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRK-GTKIAKACSDAKI-EGFPTWVI 261 (288)
Q Consensus 208 pWCpHC~~qK~lFgke---A~~~I~yVEC~~~g~n~-~~k~~~lC~~~gI-~GyPTw~I 261 (288)
+|||+|.+..+++.+. |.++.++|-|+-..+.. .++....=++-++ .+.||+.-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 5999999999998772 33456666664321110 0011122235566 99999775
No 183
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.13 E-value=0.25 Score=41.54 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=32.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++|+-+|||.|++.+.++.+. ...+.++|-..+... ..+..++++..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~~~~-~~eL~~~l~~~~ 50 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSSPLT-IDEIKQILRMTE 50 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCChhh-HHHHHHHHHHhc
Confidence 6799999999999999999774 233445665444322 223555565553
No 184
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=91.82 E-value=0.82 Score=39.10 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 023015 190 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 222 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgk 222 (288)
.+.|++...+.-+++|+ +.|||+|..+-+.|.+
T Consensus 21 ~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 21 EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34554433333344444 8999999998776655
No 185
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.75 E-value=0.8 Score=33.87 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=42.1
Q ss_pred EEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecC
Q 023015 204 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 268 (288)
Q Consensus 204 mYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G 268 (288)
.|+.+|||+|++..-.+... .....+++++...+ ..++.+...-.-.|+++.||+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~d 59 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLTD 59 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEES
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEeC
Confidence 48999999999998877663 23455677665421 2455666677789999999886553
No 186
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=91.66 E-value=0.2 Score=40.84 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.2
Q ss_pred HHHHHhhhcccCeEEEecCC-CHHHHHHHHHHhHH
Q 023015 190 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 223 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApW-CpHC~~qK~lFgke 223 (288)
.+.|++...+.-+.+|.+.| ||+|+++.+.|.+.
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 35566543444556667877 79999998877663
No 187
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=91.37 E-value=0.95 Score=39.00 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCC--cccCCCCCcCccccccchhhhhcCCchhHHHHHHHHHH
Q 023015 68 GIGGVGFLETTYLSYLKLTNS--DAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLF 126 (288)
Q Consensus 68 ~la~iGl~~t~yLT~~k~~~~--~~~C~i~~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~l~ 126 (288)
.+++.|+..++|-.+...... .+.|. .++|.++ .| +++|++++.+-+++|.++
T Consensus 70 ~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i 124 (135)
T PRK00611 70 PLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAI 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHH
Confidence 668999999999988775432 46786 3589998 45 788999999999999833
No 188
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.88 E-value=0.35 Score=41.54 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.9
Q ss_pred HHhhhhcCCCccceeEECCE-EecCCCCHHHHHHHh
Q 023015 245 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 279 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~InGe-~y~G~rsLe~La~~s 279 (288)
.+...+.||.|.||.+|||+ .+.|.++.+.|.+..
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 45567789999999999987 689999999998764
No 189
>PTZ00256 glutathione peroxidase; Provisional
Probab=90.83 E-value=1.3 Score=38.58 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHhhhcccC--eEEEecCCCHHHHHHHHHHhH
Q 023015 190 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 190 ~~aLAkhL~~~g--akmYGApWCpHC~~qK~lFgk 222 (288)
.+.|++. +-.. +.+|.|.|||.|.+..+.+.+
T Consensus 32 ~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 32 LVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred EEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 3455544 3333 246679999999987766654
No 190
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.54 E-value=0.55 Score=38.18 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=32.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++|+-++|+.|++.+.+|.+. ...+.++|-..+... .++..++.++.|
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~~~~-~~el~~~~~~~~ 50 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQPLT-KEELKEILSLTE 50 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCCcch-HHHHHHHHHHhc
Confidence 6799999999999999999874 334556766544322 223455555443
No 191
>PRK12559 transcriptional regulator Spx; Provisional
Probab=90.42 E-value=0.51 Score=39.83 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=31.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhc
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA 251 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~ 251 (288)
+++|+-++|+.|++.+.++.+. .....++|-..+.... .+..++.++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~~~s~-~el~~~l~~~ 49 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSNSMTV-DELKSILRLT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCCcCCH-HHHHHHHHHc
Confidence 6799999999999999999873 2334456665443222 2345555543
No 192
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.53 Score=37.57 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=47.0
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCC--------chhhHHhhhhcCCCccceeEE-CCEEecC
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK--------GTKIAKACSDAKIEGFPTWVI-NGQVLSG 268 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~--------~~k~~~lC~~~gI~GyPTw~I-nGe~y~G 268 (288)
++|||--||.|...++.|.+. -.+..|||.+....|= ..+.-+..+..|-=|.|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 899999999999999999985 3456789998665441 011223345567778899888 6776655
No 193
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=90.03 E-value=0.51 Score=38.47 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=20.9
Q ss_pred HHHHHhhhc-ccCeE-EEecCCCHHHHHHHHHHhH
Q 023015 190 ALSLAKHLH-AIGAK-MYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 190 ~~aLAkhL~-~~gak-mYGApWCpHC~~qK~lFgk 222 (288)
.+.|++... +.-+. ||.|.|||.|.++.+.+.+
T Consensus 19 ~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 19 EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 456666443 23334 4459999999988766544
No 194
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.12 E-value=1.2 Score=33.14 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=35.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 262 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In 262 (288)
+++|+.++||+|++.+....+. ......++..++. . ...+.-+..+-..+|+++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence 5799999999999999877663 1123346664321 1 12233334566789999873
No 195
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=89.01 E-value=0.41 Score=41.10 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHHHhhhcccCeEEEecCC-CHHHHHHHHHHhHH
Q 023015 190 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 223 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApW-CpHC~~qK~lFgke 223 (288)
.+.|++.-.+.-+..|.|.| ||.|.++.+.|.+.
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 34566543334466777888 99999998777553
No 196
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.72 E-value=0.48 Score=39.58 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.0
Q ss_pred HHhhhhcCCCccceeEECCEEecCCCCHH
Q 023015 245 AKACSDAKIEGFPTWVINGQVLSGEQDLS 273 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~InGe~y~G~rsLe 273 (288)
.+++.+.||.|.||++|||+.+.+.++++
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 46678899999999999999877766554
No 197
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.64 Score=41.61 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=32.8
Q ss_pred hHHhhhhcCCCccceeEECCEEecCCCCHHHHHHHhC
Q 023015 244 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 280 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~sG 280 (288)
..++.++.||+|-||.++||+.|.|..++++|.+...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~ 240 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIID 240 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHH
Confidence 4567788999999999999999999999999998753
No 198
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.14 E-value=2.4 Score=30.18 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=37.6
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCC-CCCCchhhHHhhhhcCCCccceeEECCEEe
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 266 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~-g~n~~~k~~~lC~~~gI~GyPTw~InGe~y 266 (288)
++|+-+.||+|++.+-++... ......++.+.. +.++ ..+.-+...-...|+++.+|+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILKGETR---TPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCCcccC---CHHHHHhCCCCCCCEEEECCEEE
Confidence 689999999999998877652 223445555431 1111 22333344556799999988654
No 199
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=88.14 E-value=2 Score=32.96 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=39.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC-CEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In-Ge~ 265 (288)
++.|+.+.||+|++.+-++... ...+..++.+.. +. ..++-+...-...|+++++ |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~--~~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLK--DK---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCC--CC---cHHHHhhCCCCCcCEEEECCCCE
Confidence 7899999999999999877663 223455666543 11 1233444567789999997 654
No 200
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=86.50 E-value=2.8 Score=36.20 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcC----CcccCCCCCcCccccccchhhhhcCCchhHHHHHHHHHHH
Q 023015 64 GWCAGIGGVGFLETTYLSYLKLTN----SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLFF 127 (288)
Q Consensus 64 ~~i~~la~iGl~~t~yLT~~k~~~----~~~~C~i~~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~l~~ 127 (288)
++.+.++++|+..++|-.+..... ..+.|. ..+|.++.-. | ++|++++.+-+++|.++.
T Consensus 67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~-~--~g~lsiP~wSl~~F~~i~ 129 (139)
T PRK03113 67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYIN-W--FGFVTIPFLALIAFITIA 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHH-H--hccCcHHHHHHHHHHHHH
Confidence 445568899999999988776432 246786 3479885443 2 456999999999998443
No 201
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=86.12 E-value=1.5 Score=37.06 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=32.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++|+-++|+.|++.+..+.+. ...+.++|-..+.... .+..+++++.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 5799999999999999999874 2334556655443322 23555665544
No 202
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.20 E-value=0.82 Score=40.59 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=25.4
Q ss_pred HhhhhcCCCccceeEECCEEecCCC---------CHHHHHHHhCC
Q 023015 246 KACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASGF 281 (288)
Q Consensus 246 ~lC~~~gI~GyPTw~InGe~y~G~r---------sLe~La~~sG~ 281 (288)
+..++.||+|.||.+|||+.+-+.+ +.+++.+..+|
T Consensus 158 ~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~ 202 (207)
T PRK10954 158 KAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKF 202 (207)
T ss_pred HHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHH
Confidence 4456789999999999999643322 45677666543
No 203
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=85.20 E-value=1.2 Score=36.97 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=18.5
Q ss_pred HHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgk 222 (288)
+.|+..-.+.-++.|+ +.|||+|..+.+.+.+
T Consensus 23 ~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 23 VSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EeHHHhCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 4555532233344444 5699999887655543
No 204
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=84.40 E-value=1.7 Score=35.88 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=33.4
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 253 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI 253 (288)
++++|+-|.|+.|++.+..+.+. .....++|-..++... .+..++.++.|+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~-gi~~~~~d~~~~p~s~-~eL~~~l~~~g~ 51 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAA-GHEVEVRDLLTEPWTA-ETLRPFFGDLPV 51 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCCcEEeehhcCCCCH-HHHHHHHHHcCH
Confidence 46899999999999999999773 2334455554443222 235566665553
No 205
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=82.71 E-value=2.2 Score=34.31 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHhhhcccCeEEEecCCCHH-HHHHHHHHhH
Q 023015 192 SLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 222 (288)
Q Consensus 192 aLAkhL~~~gakmYGApWCpH-C~~qK~lFgk 222 (288)
.+.+.-.+.-++.|.+.||+. |.++-+.+.+
T Consensus 16 ~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 16 TLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred chHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 444332333466788999997 9987665544
No 206
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=81.89 E-value=4.6 Score=35.83 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=21.5
Q ss_pred HHHHhhhcccC--eEEEecCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~g--akmYGApWCpHC~~qK~lFgk 222 (288)
+.|++.....- +.+|.|.|||.|..+...|.+
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 55665543222 237889999999998766654
No 207
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=81.43 E-value=4.1 Score=36.26 Aligned_cols=32 Identities=6% Similarity=-0.043 Sum_probs=20.4
Q ss_pred HHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgk 222 (288)
+.|++...+.-+.+|+ |.|||.|..+-..|.+
T Consensus 24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~ 56 (187)
T PRK10382 24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVAD 56 (187)
T ss_pred EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHH
Confidence 3444443333345555 9999999998766644
No 208
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=81.29 E-value=3.9 Score=36.05 Aligned_cols=90 Identities=8% Similarity=0.062 Sum_probs=50.2
Q ss_pred HHHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhHHh--h--ccCe--eEECCCCCCC------C-------c-------h
Q 023015 190 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGYR------K-------G-------T 242 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgkeA--~--~~I~--yVEC~~~g~n------~-------~-------~ 242 (288)
.+.|++...+..+.+|+ +.||++|.....-|.+.+ . ..+. -|.++..... . + .
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 45677655555566666 588999998765554421 1 1222 3333321100 0 0 0
Q ss_pred hhHHhhhhcCCC------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023015 243 KIAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 279 (288)
Q Consensus 243 k~~~lC~~~gI~------GyPTw~I---nGe~-------y~G~rsLe~La~~s 279 (288)
...++++.+|+. .||+.+| +|+. ..-.|+++++.+..
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 134678888885 4788765 5651 24557887777655
No 209
>PRK13190 putative peroxiredoxin; Provisional
Probab=80.71 E-value=4.4 Score=36.06 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=50.1
Q ss_pred HHHHHhhhcccCeE-EEecCCCHHHHHHHHHHhHHh--hc--cCe--eEECCCCCC----------CCc---------hh
Q 023015 190 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKG---------TK 243 (288)
Q Consensus 190 ~~aLAkhL~~~gak-mYGApWCpHC~~qK~lFgkeA--~~--~I~--yVEC~~~g~----------n~~---------~k 243 (288)
.+.|++.-.+.-+. +|-|.|||.|..+...|.+.. ++ .+. -|.++.... +.+ ..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 35666653332233 588999999998866655421 11 121 222221000 000 01
Q ss_pred hHHhhhhcCCC------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023015 244 IAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 279 (288)
Q Consensus 244 ~~~lC~~~gI~------GyPTw~I---nGe~-------y~G~rsLe~La~~s 279 (288)
..++++++|+. .+|+.+| ||+. ..+.|+.+||.+..
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 24677888884 5898766 6762 25678999997765
No 210
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=78.65 E-value=3.9 Score=36.40 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=40.9
Q ss_pred HHHHHhhhcccCeEEEecCCCHHHHHHHHHHhHH----hhcc--CeeEECCCC-CC--CCchhhHHhhh-hcCCCcccee
Q 023015 190 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE----AVKQ--LNYVECFPD-GY--RKGTKIAKACS-DAKIEGFPTW 259 (288)
Q Consensus 190 ~~aLAkhL~~~gakmYGApWCpHC~~qK~lFgke----A~~~--I~yVEC~~~-g~--n~~~k~~~lC~-~~gI~GyPTw 259 (288)
.+.|++.-.+.=++.|.|.||+.|+++ +.+.+. ..+. |--|.|..- .+ ....+..+.|+ ++++ .||-+
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 456666544555668889999999743 333331 1122 335677420 01 11234567786 5777 48876
Q ss_pred E---ECCE
Q 023015 260 V---INGQ 264 (288)
Q Consensus 260 ~---InGe 264 (288)
. +||+
T Consensus 95 ~k~dvnG~ 102 (183)
T PRK10606 95 SKIEVNGE 102 (183)
T ss_pred EEEccCCC
Confidence 3 3775
No 211
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=78.43 E-value=3.7 Score=32.86 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=16.9
Q ss_pred ccCeEEEe-cCCCHHHHHHHHHHhH
Q 023015 199 AIGAKMYG-AFWCSHCLEQKQMFGS 222 (288)
Q Consensus 199 ~~gakmYG-ApWCpHC~~qK~lFgk 222 (288)
+.-+++|. +.|||+|..+.+.+.+
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHH
Confidence 33345555 7899999999766655
No 212
>PRK15000 peroxidase; Provisional
Probab=77.46 E-value=6.8 Score=34.99 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHhhhccc-CeEEEec-CCCHHHHHHHHHHhHHh--hc--cCeeEECCCCCCCC------------c----------
Q 023015 190 ALSLAKHLHAI-GAKMYGA-FWCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYRK------------G---------- 241 (288)
Q Consensus 190 ~~aLAkhL~~~-gakmYGA-pWCpHC~~qK~lFgkeA--~~--~I~yVEC~~~g~n~------------~---------- 241 (288)
..+|.+.++.. -+.+|++ .|||.|..+.+-|.+.. ++ .+..|-+..|.... +
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 34565554333 3445556 59999999876665421 11 12222221111000 0
Q ss_pred hhhHHhhhhcCCC------ccceeEE---CCEE-------ecCCCCHHHHHHHh
Q 023015 242 TKIAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 279 (288)
Q Consensus 242 ~k~~~lC~~~gI~------GyPTw~I---nGe~-------y~G~rsLe~La~~s 279 (288)
....++++++|+. ++|+-+| +|+. ..-.|+.+|+.++.
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 0124677788887 6888665 6651 23457888887765
No 213
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=76.90 E-value=5.5 Score=31.84 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhh----cCCCccceeEECCEEecCCCCHHHHHH
Q 023015 211 SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD----AKIEGFPTWVINGQVLSGEQDLSDLAK 277 (288)
Q Consensus 211 pHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~----~gI~GyPTw~InGe~y~G~rsLe~La~ 277 (288)
-+|++.+.++.. ++|+|-|++-+.... ...+.=+. .|-+..|-++|||+...|-.++.+|.+
T Consensus 17 ~~~~~v~~lL~~---k~I~f~eiDI~~d~~--~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~e 82 (92)
T cd03030 17 KRQQEVLGFLEA---KKIEFEEVDISMNEE--NRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAKE 82 (92)
T ss_pred HHHHHHHHHHHH---CCCceEEEecCCCHH--HHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHHh
Confidence 378888999876 357666665432111 12222222 245778889999988888777777654
No 214
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=73.91 E-value=15 Score=29.07 Aligned_cols=39 Identities=5% Similarity=-0.193 Sum_probs=26.5
Q ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 023015 127 FISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPL 166 (288)
Q Consensus 127 ~ltl~g~~~ed~~~~~~~~~~v~~~~~~~~~~~y~~~~~~ 166 (288)
++.+.|.+|+++.+ ....++-+++++++++|+..++.+.
T Consensus 27 v~~~fG~~~~~~~~-~l~~~i~~v~~lL~~lGii~DPTT~ 65 (78)
T TIGR01598 27 ILDNFGVLWLSFNR-QLNAPIAAITTILAVVGIIMDPTTS 65 (78)
T ss_pred HHHHhcchHHHHHH-HHHHHHHHHHHHHHHHheecCCCCC
Confidence 46789999997755 3444555556667777788775443
No 215
>PRK01749 disulfide bond formation protein B; Provisional
Probab=69.91 E-value=23 Score=31.40 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCc-ccCCC-------------------CCcCccccccchhhhhcCCchhHHHHHHHHHH
Q 023015 69 IGGVGFLETTYLSYLKLTNSD-AFCPI-------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAYGLF 126 (288)
Q Consensus 69 la~iGl~~t~yLT~~k~~~~~-~~C~i-------------------~~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~l~ 126 (288)
.++.|+..++|-...+....+ ..|+. ...+|+++. -++||++++-+-+++|+++
T Consensus 81 ~al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~ 154 (176)
T PRK01749 81 SAWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAY 154 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHH
Confidence 367888888887655543332 57863 134788664 4589999999999999844
No 216
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=69.59 E-value=4.2 Score=33.91 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=20.5
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHH
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSE 223 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgke 223 (288)
.+-+..|.-|-||||++..+...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 3447788899999999998887664
No 217
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=67.71 E-value=7.3 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.0
Q ss_pred HhhhhcCCCccceeEEC---C--EEecCCCCHHHHHHHhC
Q 023015 246 KACSDAKIEGFPTWVIN---G--QVLSGEQDLSDLAKASG 280 (288)
Q Consensus 246 ~lC~~~gI~GyPTw~In---G--e~y~G~rsLe~La~~sG 280 (288)
+...+.||.|.||+++| | +.+-|..-++.+.++.+
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l~ 209 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFLG 209 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHhC
Confidence 34566799999999994 4 78999999999988764
No 218
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=67.66 E-value=3.6 Score=35.97 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=20.6
Q ss_pred HHHHhhhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~gakmYG-ApWCpHC~~qK~lFgk 222 (288)
+.+++.-.+.-+++|+ |.|||.|..+-+.|.+
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 3444433333355666 9999999998766644
No 219
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=66.87 E-value=6.4 Score=32.19 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=17.9
Q ss_pred cCeEEEecCCCHHHHHHHHHHhH
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgk 222 (288)
+-+.+|+-+-||||.++-+.+.+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhh
Confidence 34779999999999999776654
No 220
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=65.35 E-value=15 Score=29.96 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=34.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 253 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI 253 (288)
+++||-+-|+-|++++..+.+. ...+.++|-..+... .++...+.+..|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~p~t-~~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-GIEPEVVKYLKNPPT-KSELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEeccCCCcC-HHHHHHHHHHcCC
Confidence 4799999999999999999873 344556666555433 2446667776553
No 221
>PRK02110 disulfide bond formation protein B; Provisional
Probab=65.22 E-value=26 Score=30.84 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCcccCCC-C--------------------CcCccccccchhhhhcCCchhHHHHHHHHH
Q 023015 67 AGIGGVGFLETTYLSYLKLTNSDAFCPI-G--------------------GASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (288)
Q Consensus 67 ~~la~iGl~~t~yLT~~k~~~~~~~C~i-~--------------------~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~l 125 (288)
...++.|+..+.|-+..+... ...|.. . ..+|+++ +-++||+.++.+-+++|.+
T Consensus 78 ~l~a~~G~~ia~~h~~~q~~p-~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~ 152 (169)
T PRK02110 78 VLSALGGIAVAGRHVYIQLNP-GFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVL 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHH
Confidence 345788999998888877643 366851 1 1346654 3458999999999999885
Q ss_pred HHHH
Q 023015 126 FFIS 129 (288)
Q Consensus 126 ~~lt 129 (288)
+++.
T Consensus 153 ~~l~ 156 (169)
T PRK02110 153 IAVA 156 (169)
T ss_pred HHHH
Confidence 5443
No 222
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.92 E-value=8.1 Score=36.12 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=27.0
Q ss_pred HhhhhcCCCccceeEECC-EEecCCCCHHHHHHH
Q 023015 246 KACSDAKIEGFPTWVING-QVLSGEQDLSDLAKA 278 (288)
Q Consensus 246 ~lC~~~gI~GyPTw~InG-e~y~G~rsLe~La~~ 278 (288)
+..++.||+|.||++++| -..+|.++.+.|.+.
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~a 208 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDA 208 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHHH
Confidence 456789999999999955 479999998877643
No 223
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=64.55 E-value=26 Score=25.29 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=35.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC-C-CccceeEECCEEe
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK-I-EGFPTWVINGQVL 266 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g-I-~GyPTw~InGe~y 266 (288)
+++|+.+.||.|.+..-++... ......++-+.. .+ .....+.+ . ...|+++.+|+.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~-gl~~~~~~~~~~--~~----~~~~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK-GVPYEYVEEDLG--NK----SELLLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc-CCCCEEEEeCcc--cC----CHHHHHhCCCCCCCCEEEECCEEe
Confidence 4789999999999998877663 122333443322 11 12233333 2 6799999887654
No 224
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=7.6 Score=36.40 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=45.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh--hccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE---EecCCCCH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDL 272 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA--~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe---~y~G~rsL 272 (288)
++-|.|.||.-|+++++.|...+ .++..++--..+ +..++|....|++-|+.+. +|+ +..|....
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~------~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAE------EFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhh------hhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 55677999999999999997743 233334443333 2579999999999999887 454 45554443
No 225
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=60.05 E-value=3.3 Score=35.50 Aligned_cols=18 Identities=50% Similarity=1.047 Sum_probs=13.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHh
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEA 224 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA 224 (288)
-.|||||||- .++|+++.
T Consensus 93 stmygapwcd-----iqffeqen 110 (159)
T PF14673_consen 93 STMYGAPWCD-----IQFFEQEN 110 (159)
T ss_pred ccccCCCccc-----eeehhhcC
Confidence 4599999996 46777763
No 226
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=59.69 E-value=6.5 Score=34.37 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=14.3
Q ss_pred HHhhhhcCCCccceeEE-C------CEEecCCCCHHHHH
Q 023015 245 AKACSDAKIEGFPTWVI-N------GQVLSGEQDLSDLA 276 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~I-n------Ge~y~G~rsLe~La 276 (288)
.++.++.+|+++||++| | |-+.+|-.+.+.++
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE---------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 47788999999999998 4 33677777766553
No 227
>PRK04388 disulfide bond formation protein B; Provisional
Probab=56.52 E-value=52 Score=28.92 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhhhc--CCcccCCC--------------------CCcCccccccchhhhhcCCchhHHHHHHHHH
Q 023015 68 GIGGVGFLETTYLSYLKLT--NSDAFCPI--------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (288)
Q Consensus 68 ~la~iGl~~t~yLT~~k~~--~~~~~C~i--------------------~~~~C~~Vl~S~ya~vfGvPlsl~Gl~aY~l 125 (288)
..++.|+..++|-+..+.. +....|.. +...|+++. =++||+.++.+-+++|++
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHHHH
Confidence 5678999999998877654 33467852 123577653 347899999999999873
No 228
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=55.53 E-value=40 Score=29.83 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=53.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCCCCHHHHHHHhC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 280 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~sG 280 (288)
.+.+|..|-|+-|++-.+..+. +--++..++-++-. +-.+++.....-++==|-+|||+..+|--.+++++++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-~Gf~Vk~~~~~d~~----alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-NGFEVKVVETDDFL----ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-CCcEEEEeecCcHH----HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 3678889999999998887764 22244455543210 011224444555677899999999999999999999876
Q ss_pred CC
Q 023015 281 FP 282 (288)
Q Consensus 281 ~~ 282 (288)
-.
T Consensus 102 ~~ 103 (149)
T COG3019 102 EK 103 (149)
T ss_pred CC
Confidence 54
No 229
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=53.19 E-value=7 Score=34.66 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=17.7
Q ss_pred ccCeEEEecCCCHHHHHHHHHH
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMF 220 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lF 220 (288)
+..++.|+-+-||||.+..+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 3448899999999999987644
No 230
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=52.45 E-value=65 Score=23.09 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=37.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEe
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 266 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y 266 (288)
+++|+.+-||.|++..-++... ...+..++.+...... +..+.-+..--...|+++.+|+.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-~i~~~~~~~~~~~~~~--~~~~~~~~~P~~~vP~l~~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-GVDYELVPVDLTKGEH--KSPEHLARNPFGQIPALEDGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-CCCcEEEEeCcccccc--CCHHHHhhCCCCCCCEEEECCEEE
Confidence 5789899999999998877653 2234445554321111 112333345667799998887643
No 231
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.95 E-value=33 Score=27.76 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=33.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 252 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~g 252 (288)
+++||-+-|+-|++++..+.+. ...+.++|-..++.. .++...+++..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~~~t-~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-GIEPEIVEYLKTPPT-AAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEecccCCcC-HHHHHHHHHHcC
Confidence 4799999999999999988763 334556665544433 234666666665
No 232
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=51.67 E-value=28 Score=32.98 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=46.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhcc--CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCEE----------ec
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV----------LS 267 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~--I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe~----------y~ 267 (288)
++.++-+-++.|..+-..+...|.+. +.||..... ...+...+.+++.||+.+ ||+. ..
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~-------~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRAS-------KCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEEC-------GCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehh-------ccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 45666999999999999999887543 556655322 012455789999999887 8862 22
Q ss_pred CCCCHHHHHHHhCCCC
Q 023015 268 GEQDLSDLAKASGFPE 283 (288)
Q Consensus 268 G~rsLe~La~~sG~~g 283 (288)
..-+.++|..+.--.|
T Consensus 223 ~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEYG 238 (265)
T ss_dssp TT--HHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHcC
Confidence 3455667776655444
No 233
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=51.51 E-value=16 Score=34.60 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHhhhh
Q 023015 56 STSGFSPYGWCAGIGGVGFLETTYLSYLKL 85 (288)
Q Consensus 56 ~~~~~~~~~~i~~la~iGl~~t~yLT~~k~ 85 (288)
+++|.|.+.|+++||++|++.+....|-.+
T Consensus 6 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (243)
T PF05279_consen 6 GLSGSSFFTWFLVLALLGVWSSVAVVMFDL 35 (243)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhHhhheeh
Confidence 356779999999999999998876655443
No 234
>PRK10853 putative reductase; Provisional
Probab=51.22 E-value=25 Score=29.16 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=33.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 254 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~ 254 (288)
+++||-+-|.-|++.+..+.+. .....++|--.++... .+..+++++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s~-~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLDS-ELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcCH-HHHHHHHHHcCHH
Confidence 6799999999999999999763 2333445443332222 2366777776654
No 235
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=49.58 E-value=53 Score=23.59 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCC
Q 023015 207 AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 269 (288)
Q Consensus 207 ApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~ 269 (288)
..|||.|.+.+-.+... ...+..++++... ...-..+|+++.+|+.+.+-
T Consensus 13 ~s~sp~~~~v~~~L~~~-~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es 62 (72)
T cd03054 13 PSLSPECLKVETYLRMA-GIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADS 62 (72)
T ss_pred CCCCHHHHHHHHHHHhC-CCceEEEecCCcc------------cCCCcccCEEEECCEEEcCH
Confidence 34999999999887652 2234456664321 12334699999999876543
No 236
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=46.77 E-value=1.7e+02 Score=24.22 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHhHHhh---cc--CeeEECCCCCCCCchhhHHhhhhcCCC--ccceeEE----CCEE-e--cCCCCHHH
Q 023015 209 WCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQV-L--SGEQDLSD 274 (288)
Q Consensus 209 WCpHC~~qK~lFgkeA~---~~--I~yVEC~~~g~n~~~k~~~lC~~~gI~--GyPTw~I----nGe~-y--~G~rsLe~ 274 (288)
=..+..+.+..+.+-|. .+ +.++||.. ..++++..|++ .+|++.| +++. | .+.-+.++
T Consensus 106 ~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--------~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~ 177 (184)
T PF13848_consen 106 DNESTEAFKKELQDIAKKFKGKINFVYVDADD--------FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPES 177 (184)
T ss_dssp THHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--------THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHH
T ss_pred CchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--------hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHH
Confidence 45677777777766542 22 45788863 24678889998 8999997 3453 2 78889999
Q ss_pred HHHHh
Q 023015 275 LAKAS 279 (288)
Q Consensus 275 La~~s 279 (288)
|.+|.
T Consensus 178 i~~Fl 182 (184)
T PF13848_consen 178 IEKFL 182 (184)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 237
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.21 E-value=29 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=28.8
Q ss_pred hHHhhhhcCCCccceeEECCEEe-cCC-CCHHHHHHHhCCCCCCC
Q 023015 244 IAKACSDAKIEGFPTWVINGQVL-SGE-QDLSDLAKASGFPEMSQ 286 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw~InGe~y-~G~-rsLe~La~~sG~~g~~~ 286 (288)
..++-++.|.+..|-..+||+.+ .|. =+.+||++|+|...+.+
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGT
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCcccc
Confidence 56777789999999999999943 333 57899999999875544
No 238
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=44.72 E-value=13 Score=28.62 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=20.6
Q ss_pred CCCHHHHHHH--HHHhHHhhccCeeEECCCCCCC
Q 023015 208 FWCSHCLEQK--QMFGSEAVKQLNYVECFPDGYR 239 (288)
Q Consensus 208 pWCpHC~~qK--~lFgkeA~~~I~yVEC~~~g~n 239 (288)
.=||.|+.|- ++|.+. .+..|||-.-|..
T Consensus 11 A~CP~C~~~Dtl~mW~En---~ve~vECV~CG~~ 41 (66)
T COG3529 11 AVCPACQAQDTLAMWREN---NVEIVECVKCGHH 41 (66)
T ss_pred CCCcccchhhHHHHHHhc---CCceEehhhcchH
Confidence 3599999995 567764 5777888665543
No 239
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=15 Score=34.05 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=18.7
Q ss_pred HHhhhhcCCCccceeEE--CCEEe
Q 023015 245 AKACSDAKIEGFPTWVI--NGQVL 266 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~I--nGe~y 266 (288)
..+|++.|+.||||+.+ ||+.|
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceE
Confidence 46899999999999888 88853
No 240
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=44.40 E-value=82 Score=27.45 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=35.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~ 265 (288)
++.|+.++||.|++..-++.. .......++.+.+ ++ ..+.=+..=-.-.|+++.+|..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e-~gl~~e~~~v~~~--~~---~~~~~~~nP~g~VPvL~~~g~~ 68 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAE-KGVSVEIEQVEKD--NL---PQDLIDLNPYQSVPTLVDRELT 68 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHH-CCCCCEEEeCCcc--cC---CHHHHHhCCCCCCCEEEECCEE
Confidence 789999999999998876654 2223445555443 11 1122222334568999988853
No 241
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=43.83 E-value=1.2e+02 Score=22.39 Aligned_cols=61 Identities=3% Similarity=-0.123 Sum_probs=35.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~ 265 (288)
+++|+.+.||.|++..-+... .......++-+...... +..++-+-..-...|+++.||+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e-~gl~~e~~~v~~~~~~~--~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAE-KGLRCEEYDVSLPLSEH--NEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHH-cCCCCEEEEecCCcCcc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 478999999999888765544 22234445543321111 12334444566678999888864
No 242
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=43.22 E-value=4.3 Score=38.07 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.8
Q ss_pred ecCCCHHHHHH
Q 023015 206 GAFWCSHCLEQ 216 (288)
Q Consensus 206 GApWCpHC~~q 216 (288)
+.+|||+||.|
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46799999864
No 243
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.74 E-value=88 Score=24.68 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC
Q 023015 144 VQLCIASLVVAALSTSYSSIQPL 166 (288)
Q Consensus 144 ~~~~v~~~~~~~~~~~y~~~~~~ 166 (288)
..++.+++++++++|+..++.+.
T Consensus 46 ~~~v~~vl~iL~~~Gii~DPTT~ 68 (84)
T PF04531_consen 46 SNIVNAVLTILVILGIINDPTTK 68 (84)
T ss_pred HHHHHHHHHHHHHheeeeCCCCC
Confidence 34566666777777888775443
No 244
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=41.36 E-value=32 Score=29.23 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=21.6
Q ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 023015 126 FFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 162 (288)
Q Consensus 126 ~~ltl~g~~~ed~~~~~~~~~~v~~~~~~~~~~~y~~ 162 (288)
+++.+.|+-|....-+....++++++.+++..++|--
T Consensus 23 ~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 23 MIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777655555555666666655555555543
No 245
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=40.30 E-value=5.8 Score=38.02 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred ecCCCHHHHH
Q 023015 206 GAFWCSHCLE 215 (288)
Q Consensus 206 GApWCpHC~~ 215 (288)
+.+|||+|+.
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4679999973
No 246
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=39.60 E-value=1.2e+02 Score=21.69 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=34.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHH-hhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE-CCEE
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSE-AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgke-A~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I-nGe~ 265 (288)
.++|+.+.||.|.+..-.+... ....+..++-+.. ++ ..+.-+...-...|+++. ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCCE
Confidence 3789999999999988766541 1112344555432 11 122223345667999987 6643
No 247
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=38.76 E-value=89 Score=25.86 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHHHhHHhhc---cCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--C--CE--EecCC-CCHHHHHHHhC
Q 023015 217 KQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--GQ--VLSGE-QDLSDLAKASG 280 (288)
Q Consensus 217 K~lFgkeA~~---~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--n--Ge--~y~G~-rsLe~La~~sG 280 (288)
.+.|.+.|.+ .+.+.-+.. .++|++.+++. |++.+ + ++ .|.|. .+.++|.+|.-
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~---------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~ 72 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFN---------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIK 72 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEcH---------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHH
Confidence 4456554422 355665542 47899999999 99987 3 32 69998 79999999863
No 248
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.09 E-value=56 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHH
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSE 223 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgke 223 (288)
+++||-|-|.-|++++..+.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 6799999999999999998763
No 249
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=37.91 E-value=1.4e+02 Score=20.90 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=34.9
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCC-CCCCchhhHHhhhhcCCCccceeEECCEEe
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 266 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~-g~n~~~k~~~lC~~~gI~GyPTw~InGe~y 266 (288)
+.|+-+.|+.|.+.+-++... ...+..++.+.. +.+. ..+.-+...-...|+++.+|+..
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~l 62 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK-GLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLVL 62 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc-CCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEEE
Confidence 678788888888887666552 223444555432 1111 12222334566799999887653
No 250
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=37.28 E-value=76 Score=26.75 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023015 114 PLPFIGMFAYGLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSY 160 (288)
Q Consensus 114 Plsl~Gl~aY~l~~ltl~g~~~ed~~~~~~~~~~v~~~~~~~~~~~y 160 (288)
-+..+|.+..++=++.++..+|+++++..=.+++.+.+++....+.+
T Consensus 35 ~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~ 81 (145)
T PF09925_consen 35 ILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFW 81 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566778999999998887777777666555555444
No 251
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=37.22 E-value=1.6e+02 Score=30.15 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=39.9
Q ss_pred hccc-CeEEEecCCCHHHHHHHHHHhHHh--hccCee--EECCCCCCCCchhhHHhhhhcCCCccceeEE
Q 023015 197 LHAI-GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 261 (288)
Q Consensus 197 L~~~-gakmYGApWCpHC~~qK~lFgkeA--~~~I~y--VEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I 261 (288)
|++. -++.|...-|..|.+++++.++-+ ..+|.+ +|... ..++.++++|+..|+..|
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~--------~~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE--------EPESETLPKITKLPTVAL 425 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc--------chhhHhhcCCCcCCEEEE
Confidence 4433 456787788999999999998754 234443 33322 246778899999999887
No 252
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=37.10 E-value=18 Score=35.59 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHhhhhcCCCccceeEE-CCE---EecCCCCHHHHHHH
Q 023015 245 AKACSDAKIEGFPTWVI-NGQ---VLSGEQDLSDLAKA 278 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~I-nGe---~y~G~rsLe~La~~ 278 (288)
.+....+++.+.|+... |-. +|-|.++++.|+++
T Consensus 120 psv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sLv~f 157 (319)
T KOG2640|consen 120 PSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASLVNF 157 (319)
T ss_pred ccchhccccccCCcceeeccccchhhcccccHHHHHHH
Confidence 45566799999999776 543 79999999999876
No 253
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=36.19 E-value=1.7e+02 Score=25.38 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=44.3
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHhhcc-----CeeEECCCCCCCCchhhHHhhhhcCC--CccceeEE--CCE----
Q 023015 198 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NGQ---- 264 (288)
Q Consensus 198 ~~~gakmYGApWCpHC~~qK~lFgkeA~~~-----I~yVEC~~~g~n~~~k~~~lC~~~gI--~GyPTw~I--nGe---- 264 (288)
+..=+||=-|+==+.=|++-.-|.+++.+. ++-|-...-|...| .++.++++| +.||...+ .|.
T Consensus 22 ~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N---~~Laery~i~ke~fPv~~LF~~~~~~pv 98 (126)
T PF07912_consen 22 KYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKEN---MELAERYKIDKEDFPVIYLFVGDKEEPV 98 (126)
T ss_dssp SEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CC---HHHHHHTT-SCCC-SEEEEEESSTTSEE
T ss_pred ceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhH---HHHHHHhCCCcccCCEEEEecCCCCCCc
Confidence 333455544443334444444455333221 45666655444443 689999999 77999876 332
Q ss_pred Ee--cCCCCHHHHHHHhC
Q 023015 265 VL--SGEQDLSDLAKASG 280 (288)
Q Consensus 265 ~y--~G~rsLe~La~~sG 280 (288)
+| .|+-+.+.|.+|.-
T Consensus 99 ~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 99 RYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp EE-TCS-S-HHHHHHHHH
T ss_pred cCCccCCccHHHHHHHHH
Confidence 68 99999999999864
No 254
>PRK13599 putative peroxiredoxin; Provisional
Probab=34.14 E-value=30 Score=31.37 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.2
Q ss_pred EEEecCCCHHHHHHHHHHhH
Q 023015 203 KMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgk 222 (288)
.+|-|.|||.|..+-..|.+
T Consensus 34 ~~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHH
Confidence 48899999999998665544
No 255
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=33.91 E-value=5.4 Score=37.53 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=10.7
Q ss_pred ecCCCHHHHHHHHH
Q 023015 206 GAFWCSHCLEQKQM 219 (288)
Q Consensus 206 GApWCpHC~~qK~l 219 (288)
+.+|||+||...++
T Consensus 254 ~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 254 GTHFCPQCQPLRPL 267 (269)
T ss_pred CcEECCCCcCCCCC
Confidence 47899999976543
No 256
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=33.82 E-value=1.2e+02 Score=30.61 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=43.1
Q ss_pred eEEEecCCCHHHHHHHHH-----HhHHhhcc-------CeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CCE--E
Q 023015 202 AKMYGAFWCSHCLEQKQM-----FGSEAVKQ-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 265 (288)
Q Consensus 202 akmYGApWCpHC~~qK~l-----FgkeA~~~-------I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nGe--~ 265 (288)
+++|..|==.+=-.||+. +.+.+.+- +..||-.++ .++.++.|+..-+++.+ +|+ .
T Consensus 55 ~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--------~klAKKLgv~E~~SiyVfkd~~~IE 126 (383)
T PF01216_consen 55 VLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--------AKLAKKLGVEEEGSIYVFKDGEVIE 126 (383)
T ss_dssp EEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--------HHHHHHHT--STTEEEEEETTEEEE
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--------HHHHHhcCccccCcEEEEECCcEEE
Confidence 446767765665555543 44443321 346776543 68999999999999776 887 5
Q ss_pred ecCCCCHHHHHHHh
Q 023015 266 LSGEQDLSDLAKAS 279 (288)
Q Consensus 266 y~G~rsLe~La~~s 279 (288)
|-|.++.+.|.+|.
T Consensus 127 ydG~~saDtLVeFl 140 (383)
T PF01216_consen 127 YDGERSADTLVEFL 140 (383)
T ss_dssp E-S--SHHHHHHHH
T ss_pred ecCccCHHHHHHHH
Confidence 99999999999874
No 257
>PRK10026 arsenate reductase; Provisional
Probab=32.64 E-value=91 Score=26.96 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=32.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC
Q 023015 201 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 253 (288)
Q Consensus 201 gakmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI 253 (288)
.+++|+-|-|.-|++++..+.+. ...+.++|--.+.... .+..+++++.|.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-gi~~~~~d~~~~ppt~-~eL~~~l~~~g~ 53 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-GTEPTIIHYLETPPTR-DELVKLIADMGI 53 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeeeCCCcCH-HHHHHHHHhCCC
Confidence 47899999999999999999763 2334444443333222 235666666553
No 258
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=31.37 E-value=1e+02 Score=25.62 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=32.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCC
Q 023015 202 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 253 (288)
Q Consensus 202 akmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI 253 (288)
+++|+-|-|.-|++.+..|.+. .....++|-..++... ....+++++.|.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~-gi~~~~~~y~~~~~s~-~eL~~~l~~~g~ 52 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH-GIEYTFIDYLKTPPSR-EELKKILSKLGD 52 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEEEeecCCCCH-HHHHHHHHHcCc
Confidence 6799999999999999999874 2223334444333222 235566666553
No 259
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=30.26 E-value=71 Score=23.72 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEEC-CEEe
Q 023015 208 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 266 (288)
Q Consensus 208 pWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~In-Ge~y 266 (288)
+|||+|.+..-++... ......++.+...... ....+ +...-...|+++.| |+..
T Consensus 14 ~~Sp~~~kv~~~L~~~-~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~l 69 (84)
T cd03038 14 AFSPNVWKTRLALNHK-GLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEVI 69 (84)
T ss_pred CcCChhHHHHHHHHhC-CCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCEE
Confidence 6999999998887662 2223445444321111 11222 33456678999887 6543
No 260
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.35 E-value=1.5e+02 Score=23.74 Aligned_cols=56 Identities=18% Similarity=0.053 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecC
Q 023015 207 AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 268 (288)
Q Consensus 207 ApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G 268 (288)
.-+||+|++..-.+... ......++.+.+ |+ ...+-+-.=..-.|+++.||..+..
T Consensus 19 ~g~cpf~~rvrl~L~eK-gi~ye~~~vd~~--~~---p~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-GVVFNVTTVDMK--RK---PEDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCCChhHHHHHHHHHHC-CCceEEEEeCCC--CC---CHHHHHhCCCCCCCEEEECCEEecC
Confidence 57899999998766442 112334666654 22 1233333445669999888876543
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.23 E-value=41 Score=28.45 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.2
Q ss_pred HHhhhhcCCCccceeEE
Q 023015 245 AKACSDAKIEGFPTWVI 261 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~I 261 (288)
.+...+.||.|.||++|
T Consensus 159 ~~~a~~~gv~g~Ptfvv 175 (193)
T cd03025 159 QKLARELGINGFPTLVL 175 (193)
T ss_pred HHHHHHcCCCccCEEEE
Confidence 35566789999999999
No 262
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=28.17 E-value=13 Score=35.07 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.4
Q ss_pred EecCCCHHHHH
Q 023015 205 YGAFWCSHCLE 215 (288)
Q Consensus 205 YGApWCpHC~~ 215 (288)
=+++|||+||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 35789999973
No 263
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=27.81 E-value=61 Score=27.52 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=35.9
Q ss_pred HHHHHhhhcccC--eEEEecCCCHHHHHH-HHHHhHHh--hcc-----CeeEECCCCCCCCchhhHHhhhhcCC-Cccc
Q 023015 190 ALSLAKHLHAIG--AKMYGAFWCSHCLEQ-KQMFGSEA--VKQ-----LNYVECFPDGYRKGTKIAKACSDAKI-EGFP 257 (288)
Q Consensus 190 ~~aLAkhL~~~g--akmYGApWCpHC~~q-K~lFgkeA--~~~-----I~yVEC~~~g~n~~~k~~~lC~~~gI-~GyP 257 (288)
.+.|.+.++... +.||=+-|||.|..| -.-|.+.. .++ +--|-++.. . .+++.|++.++ ..||
T Consensus 20 ~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~--~---~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 20 PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP--F---VMKAWGKALGAKDKIR 93 (155)
T ss_pred eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH--H---HHHHHHHhhCCCCcEE
Confidence 356666443322 447889999999998 66565421 111 223333321 2 35677877777 3566
No 264
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.30 E-value=14 Score=34.84 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.0
Q ss_pred ecCCCHHHHH
Q 023015 206 GAFWCSHCLE 215 (288)
Q Consensus 206 GApWCpHC~~ 215 (288)
+.+|||+||.
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4689999973
No 265
>PRK13191 putative peroxiredoxin; Provisional
Probab=27.15 E-value=47 Score=30.10 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.1
Q ss_pred EEecCCCHHHHHHHHHHhH
Q 023015 204 MYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 204 mYGApWCpHC~~qK~lFgk 222 (288)
+|-|.|||.|......|.+
T Consensus 40 f~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred EeCCCCCCcCHHHHHHHHH
Confidence 7899999999998766655
No 266
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=26.99 E-value=1.2e+02 Score=23.90 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHHhHHh-hccCeeEECCCCCCCCchhhHHhhhhcCCC--ccceeE--E-CCE-EecCCCCHHHHHHHh
Q 023015 207 AFWCSHCLEQKQMFGSEA-VKQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWV--I-NGQ-VLSGEQDLSDLAKAS 279 (288)
Q Consensus 207 ApWCpHC~~qK~lFgkeA-~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~--GyPTw~--I-nGe-~y~G~rsLe~La~~s 279 (288)
=-+||=|....+...+.. ...+.+++...+. ..++.+..+++ -.-+.. + ||+ .|.|..-...+.+.+
T Consensus 4 Dg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRRDRGGRLRFVDIQSEP------DQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCCHhHHHHHHHHHhcCCCCCEEEEECCChh------hhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHc
Confidence 568999999999887743 3468899984321 12334445544 233322 3 887 899998888887776
Q ss_pred CC
Q 023015 280 GF 281 (288)
Q Consensus 280 G~ 281 (288)
+.
T Consensus 78 ~~ 79 (114)
T PF04134_consen 78 PG 79 (114)
T ss_pred Cc
Confidence 54
No 267
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=26.63 E-value=53 Score=21.08 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred CCHHHHHHHhhhcccCeEEEecCCCHHHHH
Q 023015 186 SSPFALSLAKHLHAIGAKMYGAFWCSHCLE 215 (288)
Q Consensus 186 S~~~~~aLAkhL~~~gakmYGApWCpHC~~ 215 (288)
+.+...+|.+||.. ||+|++
T Consensus 17 ~~~~~~~~~~HL~~----------C~~C~~ 36 (36)
T PF13490_consen 17 SPEERARLEAHLAS----------CPSCRE 36 (36)
T ss_dssp -HHHHHHHHHHHCT-----------HHHHH
T ss_pred CHHHHHHHHHHHHc----------CHHhcC
Confidence 45678899999987 999974
No 268
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=26.62 E-value=1.7e+02 Score=25.62 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=34.3
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeE-ECCEEec
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-INGQVLS 267 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~-InGe~y~ 267 (288)
|.|+.+.||.|.+.+-++... ......+++..+. . ....+.......|+++ .||+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~-gl~~e~~~~~~~~-~-----~~~~~~np~g~vP~l~~~~g~~l~ 59 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK-NIPVEKHVLLNDD-E-----ETPIRMIGAKQVPILQKDDGRAMP 59 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc-CCCeEEEECCCCc-c-----hhHHHhcCCCCcceEEeeCCeEec
Confidence 468888899999988877652 1123345554321 1 1223334456799998 4775433
No 269
>PRK13189 peroxiredoxin; Provisional
Probab=26.44 E-value=48 Score=30.13 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=21.6
Q ss_pred HHHHhhhcccCe--EEEecCCCHHHHHHHHHHhH
Q 023015 191 LSLAKHLHAIGA--KMYGAFWCSHCLEQKQMFGS 222 (288)
Q Consensus 191 ~aLAkhL~~~ga--kmYGApWCpHC~~qK~lFgk 222 (288)
+.+.+.++..-+ .+|-|.|||.|..+-..|.+
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~ 60 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQK 60 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHH
Confidence 456666544322 36889999999987665544
No 270
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.41 E-value=1.5e+02 Score=30.38 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=53.0
Q ss_pred HHHhhhcccC----eEEEecCCCHHHHHHHHHHhHHh--hccCe--eEECCCCCCCCchhhHHhhhhcCCCccceeEECC
Q 023015 192 SLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEA--VKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 263 (288)
Q Consensus 192 aLAkhL~~~g----akmYGApWCpHC~~qK~lFgkeA--~~~I~--yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InG 263 (288)
.+-++++.+. +.-|..--|-.|-+.-+-+.--+ .-+|. .||-.. +++.-++.+|-+.||.++||
T Consensus 106 ~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~--------Fq~Evear~IMaVPtvflnG 177 (520)
T COG3634 106 DVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGAL--------FQDEVEARNIMAVPTVFLNG 177 (520)
T ss_pred HHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchh--------hHhHHHhccceecceEEEcc
Confidence 4455555443 44577888888887766554421 11343 444322 45667788999999999999
Q ss_pred EE-ecCCCCHHHHHHHh
Q 023015 264 QV-LSGEQDLSDLAKAS 279 (288)
Q Consensus 264 e~-y~G~rsLe~La~~s 279 (288)
|. -+|..+++++-.-.
T Consensus 178 e~fg~GRmtleeilaki 194 (520)
T COG3634 178 EEFGQGRMTLEEILAKI 194 (520)
T ss_pred hhhcccceeHHHHHHHh
Confidence 85 58889999986544
No 271
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=25.96 E-value=29 Score=32.92 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.7
Q ss_pred ccCeEEEecCCCHHHHHHH
Q 023015 199 AIGAKMYGAFWCSHCLEQK 217 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK 217 (288)
+..+.+-||.|||.|-...
T Consensus 59 k~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 59 KPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred eeEEEEEecccCccchhhH
Confidence 4557799999999998774
No 272
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=25.82 E-value=2.1e+02 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHhhhhcCCC--ccceeEE-C--CEEe---cCCCCHHHHHHHhC
Q 023015 245 AKACSDAKIE--GFPTWVI-N--GQVL---SGEQDLSDLAKASG 280 (288)
Q Consensus 245 ~~lC~~~gI~--GyPTw~I-n--Ge~y---~G~rsLe~La~~sG 280 (288)
..+-+..||. +||+..+ | +.+| .|.-+.|.+.+|..
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 3467778985 5999887 2 2155 58889999998763
No 273
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=25.39 E-value=1.9e+02 Score=20.50 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=35.1
Q ss_pred EEEecCCCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEe
Q 023015 203 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 266 (288)
Q Consensus 203 kmYGApWCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y 266 (288)
+.|+.+.|+.|++.+-++... ......++.+..... ..+.-+...-...|+++.+|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~l 60 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADA-GVEYEDVRITYEEWP----ELDLKPTLPFGQLPVLEIDGKKL 60 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHC-CCCcEEEEeCHHHhh----hhhhccCCcCCCCCEEEECCEEE
Confidence 578788899999888777652 223344555432111 11122234556789998887653
No 274
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.19 E-value=16 Score=34.38 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.3
Q ss_pred ecCCCHHHH
Q 023015 206 GAFWCSHCL 214 (288)
Q Consensus 206 GApWCpHC~ 214 (288)
+.+|||+||
T Consensus 264 ~t~~CP~CQ 272 (272)
T TIGR00577 264 GTHFCPQCQ 272 (272)
T ss_pred CCEECCCCC
Confidence 467999996
No 275
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.74 E-value=1.2e+02 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=32.4
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHH----hhccCeeEECCCCCCCCchhhHHhhh--hcCCCccceeEE
Q 023015 200 IGAKMYGAFWCSHCLEQKQMFGSE----AVKQLNYVECFPDGYRKGTKIAKACS--DAKIEGFPTWVI 261 (288)
Q Consensus 200 ~gakmYGApWCpHC~~qK~lFgke----A~~~I~yVEC~~~g~n~~~k~~~lC~--~~gI~GyPTw~I 261 (288)
.|..|| ||||....-++.-- +.-+|.||+=..- ..++-. -..=++-|++++
T Consensus 18 PG~~f~----Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP-------R~~vi~llGE~~QslPvLVL 74 (112)
T PF11287_consen 18 PGQRFY----CPHCAAIEGLLASFPDLRERLDVRRVDFPRP-------RQAVIALLGEANQSLPVLVL 74 (112)
T ss_pred CCceEE----CCchHHHHhHHhhChhhhhcccEEEeCCCCc-------hHHHHHHhChhccCCCEEEe
Confidence 345566 99999998877541 1224668876432 233333 235689999999
No 276
>PHA03049 IMV membrane protein; Provisional
Probab=24.69 E-value=1.9e+02 Score=22.62 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCCCCcccccCCCCHHHHHHHhhhcccC
Q 023015 138 IQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIG 201 (288)
Q Consensus 138 ~~~~~~~~~~v~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~itt~S~~~~~aLAkhL~~~g 201 (288)
|+.+++..+||+++.++ +.++|+....... .|| .++.-....+..-.+...|+...
T Consensus 2 I~d~~l~iICVaIi~lI-vYgiYnkk~~~q~------~~p-~~e~ye~~e~~kT~yvD~L~~~h 57 (68)
T PHA03049 2 IGDIILVIICVVIIGLI-VYGIYNKKTTTSQ------NPP-SQEKYEKMEDLKTGYVDKLKSSH 57 (68)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHhcccccCC------CCC-ChhhccCchhhhhhHHhhcCHHH
Confidence 56777888888877655 3568987533211 111 12222334445556666666643
No 277
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=24.68 E-value=3e+02 Score=20.49 Aligned_cols=68 Identities=13% Similarity=0.008 Sum_probs=44.3
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHhh---ccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEE--CC----EEecCC
Q 023015 199 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVLSGE 269 (288)
Q Consensus 199 ~~gakmYGApWCpHC~~qK~lFgkeA~---~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~I--nG----e~y~G~ 269 (288)
..-++-|+..+++ .....|.+.|. ..+.+..+.. .++.++.+++. |+..+ +. ..|.|.
T Consensus 18 ~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~---------~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~ 84 (97)
T cd02981 18 DVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD---------KEVAKKLKVKP-GSVVLFKPFEEEPVEYDGE 84 (97)
T ss_pred CeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh---------HHHHHHcCCCC-CceEEeCCcccCCccCCCC
Confidence 3345567799998 45566666442 2466777753 24555566655 77666 21 259999
Q ss_pred CCHHHHHHHh
Q 023015 270 QDLSDLAKAS 279 (288)
Q Consensus 270 rsLe~La~~s 279 (288)
.+.++|.+|.
T Consensus 85 ~~~~~l~~fi 94 (97)
T cd02981 85 FTEESLVEFI 94 (97)
T ss_pred CCHHHHHHHH
Confidence 9999999986
No 278
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=22.69 E-value=2.1e+02 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.302 Sum_probs=34.4
Q ss_pred cchhhhhcCCchhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023015 104 NSDYAVVFGVPLPFIGMFAYGLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYS 161 (288)
Q Consensus 104 ~S~ya~vfGvPlsl~Gl~aY~l~~ltl~g~~~ed~~~~~~~~~~v~~~~~~~~~~~y~ 161 (288)
-++|..+||-|-.++|++.=..=+....|. |++.+-...+..++++++....+|+
T Consensus 66 PgsYNIlFgd~~~lfGv~lL~~~~~l~~~~---~L~~~~~~~~flGl~~ivygv~i~~ 120 (191)
T PF06168_consen 66 PGSYNILFGDPWLLFGVLLLSAGLALYRGW---DLRPLGIFALFLGLILIVYGVAIYN 120 (191)
T ss_pred CCcccchHhhhHHHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999987654222223333 3555556666777777665555543
No 279
>PF05101 VirB3: Type IV secretory pathway, VirB3-like protein; InterPro: IPR007792 This entry represents type IV secretion system proteins VirB3, TrbD and AvhB. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes two DNA transfer systems: VirB and Trb, where the virB operon is required for the transfer DNA to the plant host, and the trb system is required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. In addition, VirB3 is found associated with bacterial inner and outer membranes and assists T pilus formation as an assembly factor []. The conjugal transfer protein TrbD contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins []. This entry also includes avhB (Agrobacterium virulence homologue virB), which is most similar to the VirB type IV secretion system of Bartonella henselae (Rochalimaea henselae) [].
Probab=22.57 E-value=2.8e+02 Score=21.15 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=21.4
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHccccH
Q 023015 107 YAVVFGVPLPFIGMFAYGLFFISLKEFSV 135 (288)
Q Consensus 107 ya~vfGvPlsl~Gl~aY~l~~ltl~g~~~ 135 (288)
-+.++|+|..++.+.+.+.+++.++...|
T Consensus 16 p~~~~Gvp~~~~~~~~~~~~~l~~~~~~~ 44 (89)
T PF05101_consen 16 PAMILGVPREPFILNLGLAFLLFLIIRSL 44 (89)
T ss_pred hHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999998877766666655443
No 280
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=22.57 E-value=9.8 Score=29.46 Aligned_cols=27 Identities=33% Similarity=0.816 Sum_probs=18.0
Q ss_pred CCHHHHHHHH--HHhHHhhccCeeEECCCCCC
Q 023015 209 WCSHCLEQKQ--MFGSEAVKQLNYVECFPDGY 238 (288)
Q Consensus 209 WCpHC~~qK~--lFgkeA~~~I~yVEC~~~g~ 238 (288)
=||+|+.+-. +|..+ .+.++||-.=|+
T Consensus 10 ~CP~C~~~D~i~~~~e~---~ve~vECV~CGy 38 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWREN---GVEYVECVECGY 38 (71)
T ss_pred cCCCCcCccEEEEEEeC---CceEEEecCCCC
Confidence 5999999965 34443 477888855443
No 281
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=22.44 E-value=1.8e+02 Score=30.51 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=34.1
Q ss_pred hhhcCCchhHHHHHHHH--HHHHHHccccHHHHH--HHHHHHHHHHHHHHHHH
Q 023015 108 AVVFGVPLPFIGMFAYG--LFFISLKEFSVEEIQ--KVLGVQLCIASLVVAAL 156 (288)
Q Consensus 108 a~vfGvPlsl~Gl~aY~--l~~ltl~g~~~ed~~--~~~~~~~~v~~~~~~~~ 156 (288)
+.|||-|+++=|++||. --|+.++=+.|+.+. ..++..++|++-+.+..
T Consensus 89 GdvfG~pLa~E~l~AFFlEstFlGl~lFGw~rl~~~~H~~~~~lVaiGt~lSA 141 (514)
T PRK15035 89 GDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSA 141 (514)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 45689999999998887 344566667788854 45555667776655543
No 282
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=22.22 E-value=1.3e+02 Score=25.05 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=23.9
Q ss_pred hHHhhhhcCCCccceeEE--CCE---EecCCCCHHH
Q 023015 244 IAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD 274 (288)
Q Consensus 244 ~~~lC~~~gI~GyPTw~I--nGe---~y~G~rsLe~ 274 (288)
..++-..+|+..+|++.+ +|+ .++|.|+=+|
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 468888999999999887 887 4778777544
No 283
>PRK10445 endonuclease VIII; Provisional
Probab=22.21 E-value=21 Score=33.42 Aligned_cols=10 Identities=30% Similarity=1.232 Sum_probs=7.8
Q ss_pred ecCCCHHHHH
Q 023015 206 GAFWCSHCLE 215 (288)
Q Consensus 206 GApWCpHC~~ 215 (288)
+.+|||+||.
T Consensus 254 ~t~~CP~CQ~ 263 (263)
T PRK10445 254 PFYWCPGCQK 263 (263)
T ss_pred CcEECCCCcC
Confidence 4679999973
No 284
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.81 E-value=1e+02 Score=28.46 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=28.2
Q ss_pred HHhhhhcCCCccceeEECCEEecCCCCHHHHHHH
Q 023015 245 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 278 (288)
Q Consensus 245 ~~lC~~~gI~GyPTw~InGe~y~G~rsLe~La~~ 278 (288)
.++....|+=|-|||+++++.|=|-.-|.+|.+.
T Consensus 166 ~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea~ 199 (203)
T COG3917 166 TAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEAE 199 (203)
T ss_pred HHHHHhcCccCCCeEEECCeeeechhHHHHHHHH
Confidence 3556678999999999999999999888777653
No 285
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=4.1e+02 Score=25.37 Aligned_cols=77 Identities=8% Similarity=0.105 Sum_probs=51.6
Q ss_pred hcccCeEEEecCCCHHHHHHHHHHhH-HhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEE-ecCCCCHHH
Q 023015 197 LHAIGAKMYGAFWCSHCLEQKQMFGS-EAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQDLSD 274 (288)
Q Consensus 197 L~~~gakmYGApWCpHC~~qK~lFgk-eA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~-y~G~rsLe~ 274 (288)
+...-+|.|----|-.|.-+-+-..+ .--.++.++|-.. ...+.-+++|=+.|..++||+. |.+.-+.++
T Consensus 8 ~~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~--------p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ 79 (265)
T COG5494 8 EIEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL--------PPFLAFEKGVISVPSVFIDGELVYADPVDPEE 79 (265)
T ss_pred hhheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC--------ChHHHhhcceeecceEEEcCeEEEcCCCCHHH
Confidence 34555788877778777765443322 1122455666532 1344556899999999999995 788899999
Q ss_pred HHHHhCC
Q 023015 275 LAKASGF 281 (288)
Q Consensus 275 La~~sG~ 281 (288)
++....=
T Consensus 80 ies~~~G 86 (265)
T COG5494 80 IESILSG 86 (265)
T ss_pred HHHHHcC
Confidence 9976543
No 286
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=21.09 E-value=47 Score=25.51 Aligned_cols=22 Identities=27% Similarity=0.744 Sum_probs=17.5
Q ss_pred hhhcCCCccce----eEECCEEecCC
Q 023015 248 CSDAKIEGFPT----WVINGQVLSGE 269 (288)
Q Consensus 248 C~~~gI~GyPT----w~InGe~y~G~ 269 (288)
|.+..|+|.|. |..||+.+...
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCC
Confidence 66778999986 88999977543
No 287
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=20.90 E-value=2e+02 Score=30.26 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=32.8
Q ss_pred hhcCCchhHHHHHHHH--HHHHHHccccHHHHH--HHHHHHHHHHHHHHHH
Q 023015 109 VVFGVPLPFIGMFAYG--LFFISLKEFSVEEIQ--KVLGVQLCIASLVVAA 155 (288)
Q Consensus 109 ~vfGvPlsl~Gl~aY~--l~~ltl~g~~~ed~~--~~~~~~~~v~~~~~~~ 155 (288)
.|||-|+++=|++||. --|+.++=+.|+.+. ..++..++|++-+.+.
T Consensus 90 difG~pLa~E~l~AFFlEstFlGl~~FGW~rl~~~~H~~~~~lVaiGt~lS 140 (522)
T PRK15097 90 DIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLS 140 (522)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 5689999999998887 244556667788754 4555666666655554
No 288
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=20.80 E-value=1.6e+02 Score=21.31 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHhhhhcCCCc--cceeEECCEEecCCCCHHHH
Q 023015 245 AKACSDAKIEG--FPTWVINGQVLSGEQDLSDL 275 (288)
Q Consensus 245 ~~lC~~~gI~G--yPTw~InGe~y~G~rsLe~L 275 (288)
...|++.++.. -=.+.++|+++.+.++++++
T Consensus 28 ~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 28 EKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp HHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred HHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 45676667665 33466799999999999886
No 289
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=20.48 E-value=1.9e+02 Score=22.37 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCCCh
Q 023015 46 SDLRTTPSPSSTSGFSP 62 (288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~ 62 (288)
+.+...+-||..||++.
T Consensus 10 ~gVd~~d~PSa~WGWhg 26 (65)
T PF10939_consen 10 TGVDPADVPSAAWGWHG 26 (65)
T ss_pred CCCCcccCCCccccccC
Confidence 33555677899998875
No 290
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=20.31 E-value=1.8e+02 Score=28.50 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=26.2
Q ss_pred CchhHHHHHHHH----HHHHH--HccccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023015 113 VPLPFIGMFAYG----LFFIS--LKEFSVEEIQKVLGVQLCIASLVVAALSTSYS 161 (288)
Q Consensus 113 vPlsl~Gl~aY~----l~~lt--l~g~~~ed~~~~~~~~~~v~~~~~~~~~~~y~ 161 (288)
+|++++|++-|. +|+++ +.|-..+..+-+.|..+.+|++ +.+.-++|.
T Consensus 235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~-l~~~d~l~~ 288 (293)
T COG2962 235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALA-LFSIDGLYT 288 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 699999999999 55554 3333344333344444444443 334444443
No 291
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=20.07 E-value=3.5e+02 Score=19.55 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhHHhhccCeeEECCCCCCCCchhhHHhhhhcCCCccceeEECCEEecCC
Q 023015 209 WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 269 (288)
Q Consensus 209 WCpHC~~qK~lFgkeA~~~I~yVEC~~~g~n~~~k~~~lC~~~gI~GyPTw~InGe~y~G~ 269 (288)
+||.|.+..-.+... ......++.+.. ....-...|+++.||+.+...
T Consensus 16 ~sp~~~~v~~~L~~~-gi~~~~~~~~~~------------~~~p~g~vPvl~~~g~~l~eS 63 (75)
T cd03080 16 LSPFCLKVETFLRMA-GIPYENKFGGLA------------KRSPKGKLPFIELNGEKIADS 63 (75)
T ss_pred CCHHHHHHHHHHHHC-CCCcEEeecCcc------------cCCCCCCCCEEEECCEEEcCH
Confidence 789999998776552 223344554321 112345689999988765443
Done!