BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023016
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P212121
 pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P212121
 pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
          Length = 320

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 46  FSEDTMVLYDFDKVPALVALQPSYNEHNIF---YGPFDEEFLEEFIKQNFL-PLSVPINQ 101
           FS+     Y F  +PA    +P + EHN     Y   D++ +    K +   P SV    
Sbjct: 44  FSKGATDSYVFHLIPAKDVKKPGWREHNEVKDSYIKIDKQSIAARYKTSTTAPYSVAFKV 103

Query: 102 DTLNLLKDDKRKIVL 116
           +T +L+KD   KI  
Sbjct: 104 NTKSLIKDHDYKITF 118


>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
           Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
           Resolution
          Length = 437

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 107 LKDDKRKIVLAIVEDETEEKSQKLVTTLK-----AAASANRELVFCYV--GIKQFADFAD 159
           L+DD  + V +I + + EEK Q++ ++ K           RE  F Y+  G++Q  D  +
Sbjct: 35  LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE 94

Query: 160 TFEANKKSKLPKMVVW 175
             +A++    P +  W
Sbjct: 95  CLDASR----PTLCYW 106


>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
           Delta C10, W102t, Y154t) In Complex With Biotingpp
          Length = 427

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 107 LKDDKRKIVLAIVEDETEEKSQKLVTTLK-----AAASANRELVFCYV--GIKQFADFAD 159
           L+DD  + V +I + + EEK Q++ ++ K           RE  F Y+  G++Q  D  +
Sbjct: 35  LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE 94

Query: 160 TFEANKKSKLPKMVVW 175
             +A++    P +  W
Sbjct: 95  CLDASR----PTLCYW 106


>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
           COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
           Product At 3.0a
          Length = 437

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 107 LKDDKRKIVLAIVEDETEEKSQKLVTTLK-----AAASANRELVFCYV--GIKQFADFAD 159
           L+DD  + V +I + + EEK Q++ ++ K           RE  F Y+  G++Q  D  +
Sbjct: 35  LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE 94

Query: 160 TFEANKKSKLPKMVVW 175
             +A++    P +  W
Sbjct: 95  CLDASR----PTLCYW 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,784,638
Number of Sequences: 62578
Number of extensions: 311702
Number of successful extensions: 641
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 21
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)