BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023016
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F09|PDI52_ARATH Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2
PE=2 SV=1
Length = 440
Score = 306 bits (784), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/250 (60%), Positives = 195/250 (78%), Gaps = 13/250 (5%)
Query: 47 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNL 106
SEDTMV YDFDK PALVA P+YNEH++FYGPF++ FLEEF+KQ+FLPL +PIN DTL L
Sbjct: 195 SEDTMVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKL 254
Query: 107 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKK 166
LKDD+RKIVL IVEDET E +KL L+AAA ANR+LVF YVG+KQF +F D+F +KK
Sbjct: 255 LKDDERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKK 314
Query: 167 SKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEGYREGRTEQKKVAGPSIFGFV 225
+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEGYREGRTE+KK+ GPS GF+
Sbjct: 315 TNLPKIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEGYREGRTEKKKINGPSFMGFI 374
Query: 226 NSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS-------DQSEHARSTVSRAEN 278
NS+IGIRSVYI+VF+VA++M+LR+LG+ EEP+ V T+ DQ+ +TV E+
Sbjct: 375 NSMIGIRSVYILVFLVAVIMMLRSLGQ-VEEPTGVRTATAVRERVDQA----TTVPEDES 429
Query: 279 DEYRSGEKED 288
E++ +K++
Sbjct: 430 SEHKPSDKKE 439
>sp|Q0JD42|PDI52_ORYSJ Protein disulfide isomerase-like 5-2 OS=Oryza sativa subsp.
japonica GN=PDIL5-2 PE=2 SV=2
Length = 423
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/213 (57%), Positives = 167/213 (78%)
Query: 45 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL 104
DFSED MV YDFDKVPALV+L P Y E ++FYGPF+ FLE+FI+Q+ LPL+VPIN +TL
Sbjct: 203 DFSEDFMVTYDFDKVPALVSLHPKYKEQSVFYGPFEGSFLEDFIRQSLLPLTVPINTETL 262
Query: 105 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEAN 164
+L DD RK+VLAI+ED+++E S +LV L++AA+ANR+LVF YVGIKQ+ +F +TF+ +
Sbjct: 263 KMLDDDDRKVVLAILEDDSDETSSQLVKVLRSAANANRDLVFGYVGIKQWDEFVETFDIS 322
Query: 165 KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAGPSIFGF 224
K S+LPK++VWD NE Y V GSE ++E DQ SQIS+FLEGYR GRT +KKV+GPS GF
Sbjct: 323 KSSQLPKLIVWDRNEEYEVVEGSEKLEEGDQASQISQFLEGYRAGRTTKKKVSGPSFMGF 382
Query: 225 VNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEP 257
+NSL+ + S+YI++ + A+L ++ D+ P
Sbjct: 383 LNSLVSLNSLYILICVFALLGVMIYFTGQDDTP 415
>sp|Q0E0I1|PDI53_ORYSJ Protein disulfide isomerase-like 5-3 OS=Oryza sativa subsp.
japonica GN=PDIL5-3 PE=2 SV=1
Length = 425
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 165/235 (70%), Gaps = 13/235 (5%)
Query: 35 RKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDE-EFLEEFIKQNFL 93
R + ++ K DFSED MV YDFDKVPALV++ P Y E +IFYGPFD+ FLE+FI+ + L
Sbjct: 199 RAWFSVAK--DFSEDMMVFYDFDKVPALVSVNPKYREQSIFYGPFDDGAFLEDFIRNSLL 256
Query: 94 PLSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIK 152
PL VP+N++T+ +L DD RK+VL I++D E++E S +L+ L++AASANR+LVF YVG+
Sbjct: 257 PLVVPMNRETVKMLNDDGRKVVLMILQDDESDENSPRLIKVLRSAASANRDLVFGYVGVN 316
Query: 153 QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 212
Q+ +F +TF+ K S+LP M+VWD E Y V GSE ++E D GSQISRFLEGYR GRT
Sbjct: 317 QWEEFTETFDV-KSSELPTMIVWDKKEEYEIVEGSERLEEGDYGSQISRFLEGYRAGRTI 375
Query: 213 QKKVAGPSIFGFVNSLIGIRSVYI---IVFMVAMLMLLRTLGKDDEEPSRVGTSD 264
+KKV S +L+G+ +VYI +V ++ +LM G++D+ P + D
Sbjct: 376 KKKVGDRS-----PTLLGVNAVYILVFLVAVLVLLMYFSGQGEEDQRPRQRAHED 425
>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2
PE=3 SV=1
Length = 513
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 63 VALQPSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED 121
V L S++E + + G FD E L +FIK N +PL IN++T + + + D
Sbjct: 217 VVLFRSFDEPTVAHKGEFDSESLIKFIKGNSVPLLGEINRNTYKKYESIAVPLAYLFI-D 275
Query: 122 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQF 154
T++ +Q L K A S VFC+V +K+F
Sbjct: 276 STQDNTQVLEDVKKIATSQKGNAVFCWVDMKKF 308
>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp.
japonica GN=PDIL1-4 PE=2 SV=1
Length = 563
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 49 DTMVLYDFD---KVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTL 104
D L+ D K P+LV L+ E FY GPF + +F+ N LPL + Q+T
Sbjct: 237 DVAKLFHLDPAAKRPSLVLLKKQEEEKLTFYDGPFKASAIADFVSANKLPLVNTLTQETA 296
Query: 105 NLLKDD--KRKIVLAIVEDETEEKSQKLVTTLK-AAASANRELVFCYV 149
+ D+ K++I+L +V +E S K + K A+ S +L+F +V
Sbjct: 297 PSIFDNPIKKQILLFVVANE----SSKFLPIFKEASKSFKGKLLFVFV 340
>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana
GN=PDIL1-3 PE=2 SV=1
Length = 579
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 58 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDD--KRKIV 115
K PALV L+ + F G F + + EF+ N +PL + ++ +L+ + K +++
Sbjct: 273 KRPALVLLKKEEEKLARFDGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLI 332
Query: 116 LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEA--NKKSKLPKMV 173
L +E+E + L T + A S + VF YV + D+ + PK++
Sbjct: 333 LFAKANESE---KHLPTLREVAKSFKGKFVFVYVQMDN-EDYGEAVSGFFGVTGAAPKVL 388
Query: 174 VWDGNEN 180
V+ GNE+
Sbjct: 389 VYTGNED 395
>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1
Length = 399
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 183 TVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIV---- 238
T + + + +E GS + G G + GP I GF+ L GIR+V+++V
Sbjct: 121 TALIASQVPKEKSGSALGTLSTGVVAG-----TLTGPFIGGFIAELFGIRTVFLLVGSFL 175
Query: 239 FMVAMLMLLRTLGKDDEEP 257
F+ A+L + K+D +P
Sbjct: 176 FLAAILTICFI--KEDFQP 192
>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3
SV=1
Length = 399
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 183 TVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIV---- 238
T + + + +E GS + G G + GP I GF+ L GIR+V+++V
Sbjct: 121 TALIASQVPKEKSGSALGTLSTGVVAG-----TLTGPFIGGFIAELFGIRTVFLLVGSFL 175
Query: 239 FMVAMLMLLRTLGKDDEEP 257
F+ A+L + K+D +P
Sbjct: 176 FLAAILTICFI--KEDFQP 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,254,384
Number of Sequences: 539616
Number of extensions: 4113051
Number of successful extensions: 11744
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 11729
Number of HSP's gapped (non-prelim): 40
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)