Query 023016
Match_columns 288
No_of_seqs 170 out of 673
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 99.9 2.3E-24 5E-29 211.9 16.3 205 24-238 142-381 (493)
2 PF13848 Thioredoxin_6: Thiore 99.9 3E-22 6.5E-27 171.3 17.3 157 39-205 22-184 (184)
3 TIGR01130 ER_PDI_fam protein d 99.8 2.9E-17 6.3E-22 159.1 18.0 180 48-237 168-360 (462)
4 PTZ00102 disulphide isomerase; 99.8 4.2E-17 9E-22 159.8 18.2 168 59-236 198-370 (477)
5 cd03072 PDI_b'_ERp44 PDIb' fam 99.7 1.3E-17 2.7E-22 135.2 9.5 105 96-210 1-111 (111)
6 cd03073 PDI_b'_ERp72_ERp57 PDI 99.7 2.3E-16 5E-21 127.9 10.3 102 96-207 1-111 (111)
7 cd02983 P5_C P5 family, C-term 99.5 1.8E-13 3.8E-18 114.0 12.2 111 94-213 2-121 (130)
8 cd02982 PDI_b'_family Protein 99.2 4.7E-11 1E-15 93.2 9.3 92 109-207 8-103 (103)
9 KOG4277 Uncharacterized conser 99.0 5.3E-10 1.1E-14 104.3 5.7 194 25-230 166-376 (468)
10 PF01216 Calsequestrin: Calseq 98.9 4.7E-08 1E-12 92.8 16.5 165 42-213 197-374 (383)
11 KOG0912 Thiol-disulfide isomer 98.9 9E-09 1.9E-13 96.1 10.4 152 62-221 176-333 (375)
12 TIGR02187 GlrX_arch Glutaredox 98.6 1.6E-06 3.6E-11 77.4 15.5 172 22-205 39-214 (215)
13 KOG0190 Protein disulfide isom 98.3 9.8E-06 2.1E-10 80.9 12.1 147 47-211 88-239 (493)
14 PF00085 Thioredoxin: Thioredo 98.2 3.6E-05 7.8E-10 59.0 12.3 99 96-205 1-102 (103)
15 cd03004 PDI_a_ERdj5_C PDIa fam 98.1 5.7E-05 1.2E-09 59.0 10.4 99 94-203 1-104 (104)
16 PTZ00102 disulphide isomerase; 98.0 0.00038 8.2E-09 68.4 17.9 147 50-209 294-467 (477)
17 TIGR01130 ER_PDI_fam protein d 98.0 0.00047 1E-08 66.9 17.7 153 48-213 280-460 (462)
18 cd03001 PDI_a_P5 PDIa family, 98.0 0.00015 3.2E-09 56.0 11.0 97 96-203 2-102 (103)
19 KOG0191 Thioredoxin/protein di 98.0 0.00032 6.9E-09 67.9 15.8 177 23-210 65-255 (383)
20 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 0.00014 3.1E-09 56.6 10.7 97 94-202 1-100 (101)
21 PRK09381 trxA thioredoxin; Pro 97.9 0.00025 5.5E-09 55.8 11.8 101 96-207 5-108 (109)
22 TIGR01126 pdi_dom protein disu 97.7 0.0005 1.1E-08 52.6 9.5 95 100-206 2-101 (102)
23 cd03071 PDI_b'_NRX PDIb' famil 97.6 0.00041 9E-09 55.9 9.1 100 98-208 3-116 (116)
24 cd02994 PDI_a_TMX PDIa family, 97.6 0.00087 1.9E-08 51.9 10.9 96 96-204 3-100 (101)
25 cd03002 PDI_a_MPD1_like PDI fa 97.6 0.00086 1.9E-08 52.4 10.5 97 96-203 2-108 (109)
26 cd02981 PDI_b_family Protein D 97.6 0.00016 3.4E-09 55.7 5.5 66 25-91 31-97 (97)
27 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.0012 2.7E-08 53.5 11.0 100 94-203 9-113 (113)
28 TIGR01068 thioredoxin thioredo 97.6 0.0013 2.8E-08 50.0 10.6 81 115-205 16-99 (101)
29 cd03065 PDI_b_Calsequestrin_N 97.5 0.001 2.2E-08 54.8 10.3 69 129-207 48-119 (120)
30 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00084 1.8E-08 51.6 9.4 96 96-203 2-102 (102)
31 PRK10996 thioredoxin 2; Provis 97.5 0.0013 2.9E-08 54.9 10.9 99 96-206 37-138 (139)
32 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.0016 3.5E-08 50.0 10.0 97 96-203 2-105 (105)
33 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.002 4.4E-08 49.4 10.2 96 96-203 2-104 (104)
34 PF01216 Calsequestrin: Calseq 97.4 0.0035 7.6E-08 60.1 13.6 160 35-212 88-252 (383)
35 cd02996 PDI_a_ERp44 PDIa famil 97.4 0.0019 4.2E-08 50.8 10.1 96 96-203 3-108 (108)
36 cd03069 PDI_b_ERp57 PDIb famil 97.4 0.00032 6.9E-09 55.7 5.3 66 25-92 32-104 (104)
37 cd02957 Phd_like Phosducin (Ph 97.4 0.0019 4.1E-08 51.7 9.9 105 95-203 5-112 (113)
38 cd02989 Phd_like_TxnDC9 Phosdu 97.3 0.0041 8.9E-08 50.1 11.4 86 114-203 24-112 (113)
39 PTZ00443 Thioredoxin domain-co 97.3 0.0042 9.1E-08 56.5 11.7 106 94-208 30-140 (224)
40 cd02965 HyaE HyaE family; HyaE 97.2 0.0028 6E-08 51.6 9.3 79 96-179 12-94 (111)
41 cd02961 PDI_a_family Protein D 97.2 0.004 8.6E-08 46.7 9.4 93 99-203 3-101 (101)
42 cd02956 ybbN ybbN protein fami 97.2 0.0069 1.5E-07 46.3 10.5 81 114-204 13-96 (96)
43 cd03000 PDI_a_TMX3 PDIa family 97.1 0.0067 1.4E-07 47.5 10.4 84 113-206 16-103 (104)
44 cd02987 Phd_like_Phd Phosducin 97.1 0.0053 1.1E-07 53.5 10.8 111 92-206 60-174 (175)
45 COG3118 Thioredoxin domain-con 97.1 0.0038 8.3E-08 58.8 10.1 108 93-209 22-132 (304)
46 cd03066 PDI_b_Calsequestrin_mi 97.1 0.0011 2.5E-08 52.2 5.7 64 28-92 36-101 (102)
47 KOG4277 Uncharacterized conser 97.0 0.008 1.7E-07 56.9 11.6 147 40-205 81-229 (468)
48 cd02999 PDI_a_ERp44_like PDIa 97.0 0.0071 1.5E-07 47.6 9.4 82 112-203 17-100 (100)
49 cd02997 PDI_a_PDIR PDIa family 97.0 0.0072 1.6E-07 46.4 9.1 96 96-203 2-104 (104)
50 cd02993 PDI_a_APS_reductase PD 96.9 0.0089 1.9E-07 47.3 9.5 99 96-203 3-109 (109)
51 PRK11509 hydrogenase-1 operon 96.9 0.022 4.7E-07 47.8 11.6 106 91-211 17-128 (132)
52 cd03074 PDI_b'_Calsequestrin_C 96.9 0.015 3.3E-07 47.1 10.2 88 113-207 21-120 (120)
53 KOG0910 Thioredoxin-like prote 96.8 0.01 2.2E-07 50.8 9.5 72 127-208 76-149 (150)
54 cd02963 TRX_DnaJ TRX domain, D 96.8 0.016 3.4E-07 46.3 9.8 83 114-205 25-110 (111)
55 cd02950 TxlA TRX-like protein 96.8 0.029 6.2E-07 47.0 11.8 95 112-216 19-119 (142)
56 cd03007 PDI_a_ERp29_N PDIa fam 96.7 0.0061 1.3E-07 50.0 7.2 45 47-91 67-115 (116)
57 PF00085 Thioredoxin: Thioredo 96.7 0.0039 8.6E-08 47.5 5.7 70 21-91 33-103 (103)
58 cd02949 TRX_NTR TRX domain, no 96.6 0.026 5.6E-07 43.6 9.9 82 113-204 13-97 (97)
59 TIGR03143 AhpF_homolog putativ 96.6 0.062 1.3E-06 54.7 15.0 173 14-203 377-554 (555)
60 cd02988 Phd_like_VIAF Phosduci 96.6 0.041 9E-07 48.7 12.0 109 91-206 79-191 (192)
61 cd02999 PDI_a_ERp44_like PDIa 96.6 0.0044 9.6E-08 48.7 5.2 66 21-88 34-100 (100)
62 cd02948 TRX_NDPK TRX domain, T 96.5 0.037 7.9E-07 43.3 10.0 81 113-205 17-101 (102)
63 cd02984 TRX_PICOT TRX domain, 96.5 0.033 7.1E-07 42.4 9.5 79 114-203 15-96 (97)
64 PTZ00051 thioredoxin; Provisio 96.5 0.032 6.9E-07 42.6 9.3 62 114-178 19-81 (98)
65 cd02975 PfPDO_like_N Pyrococcu 96.4 0.045 9.7E-07 44.0 10.2 88 111-208 20-111 (113)
66 cd02947 TRX_family TRX family; 96.3 0.061 1.3E-06 39.1 9.7 79 115-203 12-92 (93)
67 cd02962 TMX2 TMX2 family; comp 96.2 0.039 8.4E-07 47.2 9.3 84 95-179 29-119 (152)
68 TIGR01126 pdi_dom protein disu 96.2 0.024 5.1E-07 43.2 7.3 70 21-91 29-101 (102)
69 cd02954 DIM1 Dim1 family; Dim1 96.1 0.052 1.1E-06 44.4 9.2 51 125-178 27-78 (114)
70 cd03068 PDI_b_ERp72 PDIb famil 96.1 0.0097 2.1E-07 47.7 4.7 49 42-91 51-107 (107)
71 cd03001 PDI_a_P5 PDIa family, 96.1 0.025 5.4E-07 43.4 6.8 68 21-88 34-102 (103)
72 TIGR00411 redox_disulf_1 small 95.9 0.12 2.7E-06 37.9 9.8 69 125-206 12-81 (82)
73 PF07912 ERp29_N: ERp29, N-ter 95.9 0.028 6E-07 46.6 6.4 46 47-92 70-119 (126)
74 cd02996 PDI_a_ERp44 PDIa famil 95.8 0.028 6.1E-07 44.1 6.3 68 21-88 34-108 (108)
75 cd03007 PDI_a_ERp29_N PDIa fam 95.7 0.13 2.7E-06 42.3 9.6 97 96-205 3-114 (116)
76 cd03002 PDI_a_MPD1_like PDI fa 95.7 0.049 1.1E-06 42.3 7.0 69 21-89 34-109 (109)
77 cd02985 TRX_CDSP32 TRX family, 95.7 0.24 5.3E-06 38.7 11.0 81 114-205 16-101 (103)
78 cd03004 PDI_a_ERdj5_C PDIa fam 95.6 0.031 6.7E-07 43.3 5.7 68 21-88 35-104 (104)
79 cd02998 PDI_a_ERp38 PDIa famil 95.6 0.041 8.9E-07 42.0 6.3 68 21-88 34-105 (105)
80 PF07912 ERp29_N: ERp29, N-ter 95.6 0.26 5.7E-06 40.9 11.1 101 96-205 6-117 (126)
81 cd03065 PDI_b_Calsequestrin_N 95.5 0.035 7.6E-07 45.6 5.8 54 35-90 64-117 (120)
82 PLN02309 5'-adenylylsulfate re 95.3 0.18 4E-06 50.5 11.3 104 94-206 345-456 (457)
83 cd02994 PDI_a_TMX PDIa family, 95.3 0.06 1.3E-06 41.5 6.3 68 21-90 32-101 (101)
84 PF02114 Phosducin: Phosducin; 95.2 0.097 2.1E-06 48.8 8.5 111 92-206 123-237 (265)
85 cd02961 PDI_a_family Protein D 95.2 0.069 1.5E-06 39.8 6.1 65 24-88 34-101 (101)
86 TIGR00424 APS_reduc 5'-adenyly 95.0 0.31 6.7E-06 49.0 11.9 104 94-206 351-462 (463)
87 cd02953 DsbDgamma DsbD gamma f 95.0 0.27 5.9E-06 38.1 9.2 82 113-204 11-104 (104)
88 PF13848 Thioredoxin_6: Thiore 94.9 0.17 3.7E-06 42.7 8.6 73 128-213 6-81 (184)
89 cd03003 PDI_a_ERdj5_N PDIa fam 94.9 0.1 2.2E-06 40.3 6.6 67 21-88 34-101 (101)
90 cd02992 PDI_a_QSOX PDIa family 94.8 0.2 4.3E-06 40.2 8.4 79 96-178 3-88 (114)
91 cd03005 PDI_a_ERp46 PDIa famil 94.7 0.082 1.8E-06 40.4 5.6 67 21-88 32-102 (102)
92 cd03006 PDI_a_EFP1_N PDIa fami 94.7 0.074 1.6E-06 43.1 5.6 67 21-88 45-113 (113)
93 KOG0912 Thiol-disulfide isomer 94.7 0.12 2.7E-06 49.1 7.6 104 42-149 56-161 (375)
94 cd02956 ybbN ybbN protein fami 94.7 0.1 2.2E-06 39.7 6.0 67 22-89 29-96 (96)
95 cd02995 PDI_a_PDI_a'_C PDIa fa 94.2 0.14 3.1E-06 38.9 5.9 67 22-88 35-104 (104)
96 TIGR02187 GlrX_arch Glutaredox 94.1 0.44 9.6E-06 42.4 9.7 88 110-207 17-111 (215)
97 cd02963 TRX_DnaJ TRX domain, D 94.1 0.14 3E-06 40.8 5.7 69 21-90 40-110 (111)
98 TIGR01068 thioredoxin thioredo 94.1 0.22 4.8E-06 37.4 6.7 70 21-91 30-100 (101)
99 cd03000 PDI_a_TMX3 PDIa family 94.0 0.23 4.9E-06 38.6 6.8 68 21-90 31-102 (104)
100 PHA02278 thioredoxin-like prot 93.6 1.1 2.3E-05 35.7 10.1 79 114-202 16-100 (103)
101 cd02981 PDI_b_family Protein D 93.5 0.91 2E-05 34.5 9.2 63 129-205 31-96 (97)
102 PRK10996 thioredoxin 2; Provis 93.4 0.25 5.4E-06 41.1 6.3 68 23-91 70-138 (139)
103 PLN00410 U5 snRNP protein, DIM 93.2 1.7 3.8E-05 36.8 11.1 57 120-178 31-88 (142)
104 cd02993 PDI_a_APS_reductase PD 93.1 0.3 6.5E-06 38.5 6.2 68 21-88 37-109 (109)
105 cd02953 DsbDgamma DsbD gamma f 93.0 0.44 9.4E-06 36.9 6.8 54 36-89 46-104 (104)
106 cd02947 TRX_family TRX family; 92.5 0.3 6.6E-06 35.3 5.1 68 21-89 26-93 (93)
107 cd03066 PDI_b_Calsequestrin_mi 92.5 1.4 3E-05 34.5 9.1 65 129-206 33-100 (102)
108 KOG0907 Thioredoxin [Posttrans 92.2 1.4 3E-05 35.3 8.9 68 127-205 36-104 (106)
109 cd02997 PDI_a_PDIR PDIa family 92.1 0.45 9.8E-06 36.2 5.8 68 20-88 32-104 (104)
110 cd02986 DLP Dim1 family, Dim1- 92.0 1.3 2.8E-05 36.3 8.5 53 123-178 25-78 (114)
111 PRK11509 hydrogenase-1 operon 91.9 0.54 1.2E-05 39.4 6.4 70 16-91 54-123 (132)
112 PRK09381 trxA thioredoxin; Pro 91.5 0.66 1.4E-05 36.1 6.2 70 21-91 37-107 (109)
113 cd02982 PDI_b'_family Protein 91.5 0.77 1.7E-05 35.1 6.5 67 24-90 31-101 (103)
114 cd02975 PfPDO_like_N Pyrococcu 91.4 0.67 1.4E-05 37.1 6.2 66 25-90 42-108 (113)
115 PTZ00062 glutaredoxin; Provisi 91.3 2.2 4.7E-05 38.3 10.0 77 113-208 18-95 (204)
116 KOG2603 Oligosaccharyltransfer 91.3 4.6 9.9E-05 38.7 12.5 72 132-211 84-170 (331)
117 cd03068 PDI_b_ERp72 PDIb famil 91.2 1.5 3.2E-05 35.0 8.0 68 129-205 33-106 (107)
118 cd02951 SoxW SoxW family; SoxW 90.8 3.7 8.1E-05 32.7 10.2 87 114-210 15-122 (125)
119 cd02950 TxlA TRX-like protein 90.7 0.85 1.9E-05 38.1 6.5 71 21-91 36-109 (142)
120 cd03069 PDI_b_ERp57 PDIb famil 90.4 2.7 5.8E-05 33.1 8.8 67 129-205 32-102 (104)
121 cd02948 TRX_NDPK TRX domain, T 90.3 0.85 1.8E-05 35.5 5.8 66 21-90 33-101 (102)
122 cd02949 TRX_NTR TRX domain, no 90.1 0.75 1.6E-05 35.3 5.3 68 21-89 29-97 (97)
123 KOG0910 Thioredoxin-like prote 89.9 0.57 1.2E-05 40.2 4.7 69 22-91 78-147 (150)
124 cd03026 AhpF_NTD_C TRX-GRX-lik 89.9 1.6 3.4E-05 33.7 6.9 63 109-174 9-71 (89)
125 TIGR01295 PedC_BrcD bacterioci 89.8 4.5 9.7E-05 32.9 9.9 101 96-204 8-121 (122)
126 cd03067 PDI_b_PDIR_N PDIb fami 89.7 2.2 4.8E-05 34.5 7.6 84 116-205 22-110 (112)
127 cd02973 TRX_GRX_like Thioredox 89.3 1.4 3E-05 31.2 5.8 46 127-175 14-59 (67)
128 TIGR00424 APS_reduc 5'-adenyly 89.1 1.2 2.5E-05 44.9 7.0 70 21-90 387-461 (463)
129 PRK15317 alkyl hydroperoxide r 88.2 3.6 7.9E-05 41.4 10.0 113 58-174 60-175 (517)
130 PTZ00443 Thioredoxin domain-co 87.6 1.5 3.2E-05 39.9 6.1 70 21-92 68-139 (224)
131 cd02983 P5_C P5 family, C-term 87.2 1.8 3.8E-05 35.9 5.9 44 48-91 69-114 (130)
132 PLN02309 5'-adenylylsulfate re 86.9 1.8 4E-05 43.4 6.9 70 21-90 381-455 (457)
133 cd02984 TRX_PICOT TRX domain, 86.4 1.8 3.9E-05 32.6 5.2 64 22-88 31-96 (97)
134 cd02989 Phd_like_TxnDC9 Phosdu 86.3 2.9 6.3E-05 33.4 6.6 53 36-88 53-112 (113)
135 TIGR03140 AhpF alkyl hydropero 86.2 6.3 0.00014 39.7 10.4 114 58-175 61-177 (515)
136 KOG0191 Thioredoxin/protein di 86.1 5.5 0.00012 38.5 9.7 81 126-216 61-143 (383)
137 cd02952 TRP14_like Human TRX-r 85.8 8.1 0.00017 31.7 9.1 68 127-203 43-118 (119)
138 PRK03147 thiol-disulfide oxido 84.6 17 0.00036 30.3 10.8 70 127-206 76-171 (173)
139 cd02957 Phd_like Phosducin (Ph 84.0 2.4 5.2E-05 33.5 5.1 39 49-88 67-112 (113)
140 PHA02278 thioredoxin-like prot 83.6 2.7 5.9E-05 33.3 5.2 66 21-87 30-100 (103)
141 TIGR02740 TraF-like TraF-like 83.1 12 0.00026 34.8 10.0 87 114-208 167-265 (271)
142 cd02985 TRX_CDSP32 TRX family, 82.4 4.9 0.00011 31.2 6.2 66 22-89 32-100 (103)
143 cd02965 HyaE HyaE family; HyaE 81.8 4 8.7E-05 33.2 5.6 64 21-85 45-109 (111)
144 cd02951 SoxW SoxW family; SoxW 79.9 10 0.00022 30.1 7.5 43 48-90 74-117 (125)
145 PRK14018 trifunctional thiored 79.1 29 0.00064 35.5 12.0 103 93-207 38-173 (521)
146 PF13728 TraF: F plasmid trans 78.9 14 0.00031 33.1 8.8 76 116-200 124-211 (215)
147 COG3118 Thioredoxin domain-con 78.0 7 0.00015 37.2 6.6 71 21-93 59-131 (304)
148 KOG0908 Thioredoxin-like prote 78.0 20 0.00043 33.6 9.3 74 127-210 36-109 (288)
149 PF13098 Thioredoxin_2: Thiore 77.0 18 0.0004 27.7 7.9 81 113-203 5-112 (112)
150 TIGR00412 redox_disulf_2 small 76.3 17 0.00037 26.8 7.2 62 127-203 13-75 (76)
151 KOG3170 Conserved phosducin-li 76.2 33 0.00072 31.1 10.0 111 86-205 83-199 (240)
152 PTZ00051 thioredoxin; Provisio 75.7 5.8 0.00013 29.8 4.6 62 21-85 34-96 (98)
153 PF13192 Thioredoxin_3: Thiore 75.6 24 0.00052 25.9 7.8 63 128-204 14-76 (76)
154 cd02966 TlpA_like_family TlpA- 73.8 33 0.00071 25.3 8.4 47 127-176 34-105 (116)
155 TIGR00411 redox_disulf_1 small 71.7 17 0.00037 26.2 6.2 50 37-91 32-81 (82)
156 PRK00293 dipZ thiol:disulfide 69.8 48 0.001 34.2 11.0 63 135-207 500-570 (571)
157 TIGR03143 AhpF_homolog putativ 69.5 31 0.00067 35.2 9.5 114 110-236 364-491 (555)
158 cd03072 PDI_b'_ERp44 PDIb' fam 68.8 14 0.00031 29.4 5.6 54 37-90 50-106 (111)
159 PF14595 Thioredoxin_9: Thiore 66.3 32 0.0007 28.3 7.4 95 101-206 30-128 (129)
160 PRK03147 thiol-disulfide oxido 65.4 22 0.00048 29.5 6.4 70 21-90 77-170 (173)
161 KOG0914 Thioredoxin-like prote 64.6 8.6 0.00019 35.3 3.8 58 120-177 152-214 (265)
162 TIGR02740 TraF-like TraF-like 63.0 21 0.00045 33.2 6.2 71 21-92 182-264 (271)
163 KOG3171 Conserved phosducin-li 62.7 11 0.00024 34.5 4.1 50 125-178 172-221 (273)
164 TIGR02739 TraF type-F conjugat 62.2 73 0.0016 29.6 9.6 74 119-201 156-242 (256)
165 cd03073 PDI_b'_ERp72_ERp57 PDI 61.9 27 0.00058 28.0 5.9 41 49-90 64-109 (111)
166 cd02987 Phd_like_Phd Phosducin 61.7 25 0.00055 30.4 6.2 43 49-91 126-174 (175)
167 PF13192 Thioredoxin_3: Thiore 61.5 10 0.00022 27.9 3.2 37 47-89 39-76 (76)
168 PF13098 Thioredoxin_2: Thiore 60.6 12 0.00026 28.8 3.6 40 48-88 72-112 (112)
169 PRK13703 conjugal pilus assemb 59.8 82 0.0018 29.2 9.5 82 119-209 149-243 (248)
170 PF07449 HyaE: Hydrogenase-1 e 57.6 30 0.00065 27.9 5.5 51 125-178 41-92 (107)
171 cd02954 DIM1 Dim1 family; Dim1 54.6 26 0.00056 28.5 4.7 46 22-67 31-77 (114)
172 TIGR01295 PedC_BrcD bacterioci 54.5 33 0.00071 27.8 5.4 69 20-89 38-121 (122)
173 cd02959 ERp19 Endoplasmic reti 53.8 79 0.0017 25.2 7.5 63 113-176 19-84 (117)
174 PTZ00062 glutaredoxin; Provisi 53.8 1.2E+02 0.0025 27.2 9.2 135 22-175 34-175 (204)
175 smart00594 UAS UAS domain. 51.8 43 0.00093 26.9 5.6 76 11-88 35-121 (122)
176 cd02958 UAS UAS family; UAS is 50.6 1.2E+02 0.0026 23.6 9.7 64 136-209 44-113 (114)
177 cd01659 TRX_superfamily Thiore 50.0 62 0.0013 20.2 6.9 48 127-177 12-62 (69)
178 cd02962 TMX2 TMX2 family; comp 49.8 28 0.00061 29.6 4.4 47 21-67 63-117 (152)
179 cd02992 PDI_a_QSOX PDIa family 49.6 51 0.0011 26.1 5.7 24 46-69 66-89 (114)
180 cd02955 SSP411 TRX domain, SSP 48.5 63 0.0014 26.5 6.1 64 136-207 42-119 (124)
181 PRK00293 dipZ thiol:disulfide 46.5 75 0.0016 32.8 7.7 44 48-91 524-569 (571)
182 cd03011 TlpA_like_ScsD_MtbDsbE 46.5 1.4E+02 0.0029 23.1 9.0 36 155-200 83-119 (123)
183 PF05768 DUF836: Glutaredoxin- 45.3 1.2E+02 0.0026 22.4 6.8 63 129-204 15-81 (81)
184 cd02952 TRP14_like Human TRX-r 43.0 75 0.0016 25.9 5.8 66 21-88 44-118 (119)
185 PF13778 DUF4174: Domain of un 42.0 1.8E+02 0.004 23.4 9.1 84 113-205 10-110 (118)
186 KOG1731 FAD-dependent sulfhydr 41.8 3.1E+02 0.0068 28.7 11.0 155 21-184 73-253 (606)
187 TIGR00385 dsbE periplasmic pro 41.2 1.1E+02 0.0024 25.9 6.8 44 155-208 127-172 (173)
188 TIGR00412 redox_disulf_2 small 40.8 56 0.0012 23.9 4.3 61 22-89 15-76 (76)
189 cd02958 UAS UAS family; UAS is 39.7 87 0.0019 24.4 5.6 80 9-90 23-109 (114)
190 cd03011 TlpA_like_ScsD_MtbDsbE 39.7 43 0.00093 26.0 3.8 40 45-85 80-119 (123)
191 cd03009 TryX_like_TryX_NRX Try 38.9 1.9E+02 0.0042 22.7 8.0 19 157-178 91-110 (131)
192 cd02988 Phd_like_VIAF Phosduci 38.8 66 0.0014 28.3 5.2 44 48-91 142-191 (192)
193 PRK14018 trifunctional thiored 37.4 86 0.0019 32.2 6.3 48 45-92 126-173 (521)
194 cd02969 PRX_like1 Peroxiredoxi 36.3 2.5E+02 0.0055 23.3 11.2 52 158-213 102-158 (171)
195 PLN02919 haloacid dehalogenase 36.1 3.4E+02 0.0073 30.3 11.1 86 113-208 420-537 (1057)
196 PF07449 HyaE: Hydrogenase-1 e 36.0 40 0.00086 27.3 3.0 45 16-67 46-91 (107)
197 PF13905 Thioredoxin_8: Thiore 34.4 1.9E+02 0.004 21.2 6.6 38 115-152 3-44 (95)
198 PF11303 DUF3105: Protein of u 33.5 2.8E+02 0.0061 23.0 8.3 64 127-213 61-124 (130)
199 PF05768 DUF836: Glutaredoxin- 33.5 1.4E+02 0.0031 22.0 5.6 52 37-89 29-81 (81)
200 PF13905 Thioredoxin_8: Thiore 32.3 1.4E+02 0.0031 21.9 5.5 30 21-50 17-49 (95)
201 smart00594 UAS UAS domain. 32.2 2.6E+02 0.0056 22.2 9.4 54 144-203 63-121 (122)
202 cd02973 TRX_GRX_like Thioredox 32.0 87 0.0019 21.6 4.0 29 36-64 30-58 (67)
203 cd02964 TryX_like_family Trypa 31.2 2.7E+02 0.0058 22.1 8.0 16 158-176 92-107 (132)
204 cd03026 AhpF_NTD_C TRX-GRX-lik 30.5 1.2E+02 0.0026 23.1 4.8 42 36-82 43-84 (89)
205 PF09673 TrbC_Ftype: Type-F co 30.5 14 0.0003 29.8 -0.5 25 43-67 56-80 (113)
206 cd02966 TlpA_like_family TlpA- 29.6 1.3E+02 0.0028 22.0 4.8 27 21-47 35-63 (116)
207 KOG0907 Thioredoxin [Posttrans 29.4 1.3E+02 0.0029 23.8 5.1 69 21-91 37-105 (106)
208 TIGR00385 dsbE periplasmic pro 28.7 84 0.0018 26.6 4.1 43 49-91 128-170 (173)
209 KOG1672 ATP binding protein [P 27.3 1.2E+02 0.0025 27.5 4.7 110 85-203 58-174 (211)
210 cd03009 TryX_like_TryX_NRX Try 27.2 1.6E+02 0.0034 23.2 5.2 19 49-67 90-108 (131)
211 TIGR02738 TrbB type-F conjugat 27.0 2E+02 0.0044 24.3 6.1 69 21-90 66-151 (153)
212 cd02967 mauD Methylamine utili 25.8 2.5E+02 0.0053 21.3 6.0 36 128-163 37-76 (114)
213 cd02986 DLP Dim1 family, Dim1- 24.6 1.3E+02 0.0028 24.6 4.2 47 22-68 31-78 (114)
214 cd02978 KaiB_like KaiB-like fa 23.8 2.5E+02 0.0055 21.0 5.3 50 121-173 9-60 (72)
215 TIGR02196 GlrX_YruB Glutaredox 23.6 2.4E+02 0.0052 19.0 7.7 48 142-204 23-74 (74)
216 PF11395 DUF2873: Protein of u 23.1 1.1E+02 0.0024 20.3 2.8 19 233-251 13-31 (43)
217 cd03010 TlpA_like_DsbE TlpA-li 23.0 3.6E+02 0.0079 20.9 9.1 26 156-184 91-118 (127)
218 COG4232 Thiol:disulfide interc 22.4 1.5E+02 0.0033 30.8 5.1 44 48-91 524-567 (569)
219 PF13728 TraF: F plasmid trans 22.4 2.2E+02 0.0048 25.4 5.7 70 14-86 131-212 (215)
220 PRK15412 thiol:disulfide inter 22.0 1.5E+02 0.0031 25.5 4.3 68 21-90 84-174 (185)
221 PF00837 T4_deiodinase: Iodoth 20.7 1.5E+02 0.0033 27.4 4.3 54 96-149 84-140 (237)
222 PF09822 ABC_transp_aux: ABC-t 20.7 6.3E+02 0.014 22.8 11.2 109 100-210 13-145 (271)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-24 Score=211.88 Aligned_cols=205 Identities=18% Similarity=0.240 Sum_probs=163.9
Q ss_pred cccchhHHhhhcceeeEeeecccc------------------------HHHHhHcCCCC--CCeEEEEccCCCCcccccC
Q 023016 24 LPLMSPFLIQMRKFLTLLKMLDFS------------------------EDTMVLYDFDK--VPALVALQPSYNEHNIFYG 77 (288)
Q Consensus 24 ~~~~~~~~~~~~k~~~v~~~~~~s------------------------eel~~~y~~~~--~PsIvlfk~~dee~~~f~g 77 (288)
....+.|+.. +.+.++|++++.+ .++..+++... .+.+++++++|+....|+|
T Consensus 142 ~~~a~~~l~~-~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~ 220 (493)
T KOG0190|consen 142 VDEAEEFLSK-KDVVVIGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDG 220 (493)
T ss_pred HHHHHhhccC-CceEEEEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhccc
Confidence 3445666666 8888999888776 33333333321 2349999999998888999
Q ss_pred CCCHHHHHHHHHHcCCCCeeecCccchhhhccccCCcEEEEEEcc--ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCc
Q 023016 78 PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE--TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF 154 (288)
Q Consensus 78 ~f~~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~--~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~ 154 (288)
+++.+.|++||..+++|||+++|+++... +.++.++..+++.. ....++++++.++++|++||| ++|+++|...+
T Consensus 221 ~~~~~~l~~Fi~~~~~plv~~ft~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~ 298 (493)
T KOG0190|consen 221 SFTPELLKKFIQENSLPLVTEFTVANNAK--IYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESF 298 (493)
T ss_pred ccCHHHHHHHHHHhcccccceecccccce--eeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHh
Confidence 99999999999999999999999988877 45555555554433 333689999999999999999 99999999999
Q ss_pred hhHHhhcCCCCCCCCC-eEEEEe-CCceeeccCCCCCCCCCCCHHHHHHHHHHHhcCccccccccCCC---CC-CCceEE
Q 023016 155 ADFADTFEANKKSKLP-KMVVWD-GNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAGPS---IF-GFVNSL 228 (288)
Q Consensus 155 ~~~le~fGL~k~~~lP-ai~I~d-~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gklkp~iKSeP~---~~-~~v~~l 228 (288)
++++++||+ +..+.| .+++.+ .+.||.+.. ++++.++|++|+++|++|+++|++||||. +. ++|+++
T Consensus 299 ~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~~------e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvv 371 (493)
T KOG0190|consen 299 ARVLEFFGL-EEEQLPIRAVILNEDGSKYPLEE------EELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVV 371 (493)
T ss_pred hHHHHhcCc-ccccCCeeEEeeccccccccCcc------ccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEE
Confidence 999999999 777777 445555 567998764 46889999999999999999999999964 44 589999
Q ss_pred eecchhHHHH
Q 023016 229 IGIRSVYIIV 238 (288)
Q Consensus 229 Vg~~~~~i~~ 238 (288)
||+|+-.|.+
T Consensus 372 Vgknfd~iv~ 381 (493)
T KOG0190|consen 372 VGKNFDDIVL 381 (493)
T ss_pred eecCHHHHhh
Confidence 9999987653
No 2
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.89 E-value=3e-22 Score=171.31 Aligned_cols=157 Identities=22% Similarity=0.360 Sum_probs=131.9
Q ss_pred eEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCC-CCHHHHHHHHHHcCCCCeeecCccchhhhccccCCcE-E
Q 023016 39 TLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIV-L 116 (288)
Q Consensus 39 ~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~-f~~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~~~-l 116 (288)
.+-++...+++++.+++++. |+|++||+.+++...|.|+ ++.+.|.+||..+++|+|+++|++|+.. ++..+++ +
T Consensus 22 ~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~--~~~~~~~~~ 98 (184)
T PF13848_consen 22 DYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEK--LFSSPKPPV 98 (184)
T ss_dssp TSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHH--HHSTSSEEE
T ss_pred CcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhhHHH--HhcCCCceE
Confidence 35556666889999999987 9999999988888899998 8999999999999999999999999998 6666655 4
Q ss_pred EEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe-C-CceeeccCCCCCCCC
Q 023016 117 AIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD-G-NENYLTVIGSESIDE 192 (288)
Q Consensus 117 ~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d-~-~~KY~~~~~~~~~~~ 192 (288)
++++.. +.+..+.+.+.++++|+++++ +.|+|+|.+.+++.+++||+ +..++|+++|++ . +.+|.+.. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~~~~~~------~ 171 (184)
T PF13848_consen 99 LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKYYYLPE------G 171 (184)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEEEE--S------S
T ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcEEcCCC------C
Confidence 445543 556688999999999999999 99999999999999999999 778999999999 3 33333322 3
Q ss_pred CCCHHHHHHHHHH
Q 023016 193 EDQGSQISRFLEG 205 (288)
Q Consensus 193 e~t~e~I~~Fl~~ 205 (288)
+++.++|.+||++
T Consensus 172 ~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 172 EITPESIEKFLND 184 (184)
T ss_dssp CGCHHHHHHHHHH
T ss_pred CCCHHHHHHHhcC
Confidence 7999999999986
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.76 E-value=2.9e-17 Score=159.10 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=140.4
Q ss_pred HHHHhHcCCCCCCeEEEEccCCCCc--ccccCCC--CHHHHHHHHHHcCCCCeeecCccchhhhccccCC-cEEEEEEcc
Q 023016 48 EDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK-IVLAIVEDE 122 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~dee~--~~f~g~f--~~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~-~~l~~lf~~ 122 (288)
+.+..+++.. .+.+++|++.++.. ..|+|+. +.+.|.+||..+++|++.++|.+++.. ++..+ ..+++++..
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~--~~~~~~~~~l~~~~~ 244 (462)
T TIGR01130 168 VAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAK--YFESGPLVVLYYNVD 244 (462)
T ss_pred HHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhh--HhCCCCceeEEEEec
Confidence 3444555543 36788898765444 3577765 568999999999999999999999887 34443 323223322
Q ss_pred -ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe-CC-ceeeccCCCCCCCCCCCHH
Q 023016 123 -TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD-GN-ENYLTVIGSESIDEEDQGS 197 (288)
Q Consensus 123 -~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d-~~-~KY~~~~~~~~~~~e~t~e 197 (288)
..+..+++.+.++++|++|+| +.|+++|..++.+++++||+ +...+|.++|++ .+ .+|.+.+ . +++.+
T Consensus 245 ~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~~-----~-~~~~~ 317 (462)
T TIGR01130 245 ESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMDQ-----E-EFSSE 317 (462)
T ss_pred CCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCCc-----C-CCCHH
Confidence 222357899999999999995 99999999999999999999 666799999999 44 6787754 2 68999
Q ss_pred HHHHHHHHHhcCccccccccCCCC---CCCceEEeecchhHHH
Q 023016 198 QISRFLEGYREGRTEQKKVAGPSI---FGFVNSLIGIRSVYII 237 (288)
Q Consensus 198 ~I~~Fl~~fl~Gklkp~iKSeP~~---~~~v~~lVg~~~~~i~ 237 (288)
+|.+|++++++|+++|..+|+|.+ .+.+..++|.|+-.++
T Consensus 318 ~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v 360 (462)
T TIGR01130 318 NLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIV 360 (462)
T ss_pred HHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHh
Confidence 999999999999999999999763 4689999999987654
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=4.2e-17 Score=159.81 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=136.6
Q ss_pred CCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHH
Q 023016 59 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA 138 (288)
Q Consensus 59 ~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vA 138 (288)
.+.+++||+.+ ....+.+..+.++|..||..+++|++.++|.+++.. ++..+.++++++. ..++.+++...++++|
T Consensus 198 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A 273 (477)
T PTZ00102 198 KNKIYVLHKDE-EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRR--YISSGKDLVWFCG-TTEDYDKYKSVVRKVA 273 (477)
T ss_pred CCcEEEEecCC-CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHH--HhcCCccEEEEec-CHHHHHHHHHHHHHHH
Confidence 46788898754 444444456889999999999999999999999988 7777787776654 4455678999999999
Q ss_pred HhcCC-cEEEEEeCcCchh-HHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHHhcCccccccc
Q 023016 139 SANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKV 216 (288)
Q Consensus 139 k~~rg-l~Fv~VD~~~~~~-~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gklkp~iK 216 (288)
+++|+ +.|+|+|..++.. +++.||+ + .+|++++.+.+.+|.+++.. ...++.++|.+|+++|.+|+++++++
T Consensus 274 ~~~~~~~~f~~vd~~~~~~~~~~~~gi-~--~~P~~~i~~~~~~y~~~~~~---~~~~~~~~l~~Fv~~~~~gk~~~~~~ 347 (477)
T PTZ00102 274 RKLREKYAFVWLDTEQFGSHAKEHLLI-E--EFPGLAYQSPAGRYLLPPAK---ESFDSVEALIEFFKDVEAGKVEKSIK 347 (477)
T ss_pred HhccCceEEEEEechhcchhHHHhcCc-c--cCceEEEEcCCcccCCCccc---cccCCHHHHHHHHHHHhCCCCCcccc
Confidence 99999 9999999999985 7899999 3 58999998844478765410 01368999999999999999999999
Q ss_pred cCCC---CCCCceEEeecchhHH
Q 023016 217 AGPS---IFGFVNSLIGIRSVYI 236 (288)
Q Consensus 217 SeP~---~~~~v~~lVg~~~~~i 236 (288)
|+|. ..+.++.++|.|+-.+
T Consensus 348 se~~p~~~~~~v~~l~~~~f~~~ 370 (477)
T PTZ00102 348 SEPIPEEQDGPVKVVVGNTFEEI 370 (477)
T ss_pred cCCCCCCCCCCeEEecccchHHH
Confidence 9964 3457999999988755
No 5
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.73 E-value=1.3e-17 Score=135.19 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=92.5
Q ss_pred eeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHh---cCC-cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~---~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
|.++|++|+.. |++.++++++++. +.++.+++++.++++|++ ||| ++|+++|+++++.++++||+ +++++|+
T Consensus 1 ~~e~t~e~~~~--~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEE--LTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHH--HhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 56899999998 8888888887777 666789999999999999 999 99999999999999999999 6778999
Q ss_pred EEEEe-CC-ceeeccCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 023016 172 MVVWD-GN-ENYLTVIGSESIDEEDQGSQISRFLEGYREGR 210 (288)
Q Consensus 172 i~I~d-~~-~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gk 210 (288)
++|++ .+ .||++. .+++++++|++||++|++|+
T Consensus 77 i~i~~~~~~~Ky~~~------~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDF------EDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCC------ccccCHHHHHHHHHHHhcCC
Confidence 99999 44 589732 23799999999999999996
No 6
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.68 E-value=2.3e-16 Score=127.93 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=89.2
Q ss_pred eeecCccchhhhccccCCcEEEEEEc---cChhhHHHHHHHHHHHHHhcC-C-cEEEEEeCcCchhHHhhcCCCCCCC--
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK-- 168 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~---~~~e~~e~~~~~l~~vAk~~r-g-l~Fv~VD~~~~~~~le~fGL~k~~~-- 168 (288)
|+++|.+|+.. ++.++++++|+.. .+.++.+++++.++++|++|| | ++|+|+|.+++++++++||| ++++
T Consensus 1 v~~~~~en~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~ 77 (111)
T cd03073 1 VGHRTKDNRAQ--FTKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGE 77 (111)
T ss_pred CCeeccchHHH--hccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCC
Confidence 67899999999 7888998888744 255678999999999999999 8 99999999999999999999 6667
Q ss_pred CCeEEEEe-CCceeeccCCCCCCCCCC-CHHHHHHHHHHHh
Q 023016 169 LPKMVVWD-GNENYLTVIGSESIDEED-QGSQISRFLEGYR 207 (288)
Q Consensus 169 lPai~I~d-~~~KY~~~~~~~~~~~e~-t~e~I~~Fl~~fl 207 (288)
+|+++|++ .+.||++++ ++ |.++|.+||++|+
T Consensus 78 ~P~~~i~~~~~~KY~~~~-------~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 78 KPVVAIRTAKGKKYVMEE-------EFSDVDALEEFLEDFF 111 (111)
T ss_pred CCEEEEEeCCCCccCCCc-------ccCCHHHHHHHHHHhC
Confidence 99999999 557998654 68 9999999999984
No 7
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.51 E-value=1.8e-13 Score=113.95 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=87.0
Q ss_pred CCeeecCccc-hhhhcccc-CCcEEEEEEcc----ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCC
Q 023016 94 PLSVPINQDT-LNLLKDDK-RKIVLAIVEDE----TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK 165 (288)
Q Consensus 94 PLV~e~n~et-~~~l~~~~-~~~~l~~lf~~----~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k 165 (288)
|-|.+++.+. +.. .+. ++++++.++.. +.++++++++.|+++|++||| +.|+|+|++++..++++||+ +
T Consensus 2 ~~~~~l~~~~~~~~--~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~ 78 (130)
T cd02983 2 PEIIELTSEDVFEE--TCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-G 78 (130)
T ss_pred CceEEecCHHHHHh--hccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-C
Confidence 4567777543 343 332 45666555432 445678999999999999999 89999999999889999999 6
Q ss_pred CCCCCeEEEEe-CCceeeccCCCCCCCCCCCHHHHHHHHHHHhcCcccc
Q 023016 166 KSKLPKMVVWD-GNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 213 (288)
Q Consensus 166 ~~~lPai~I~d-~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gklkp 213 (288)
..++|++++++ .+.||.+. ..++|.++|.+|+++|++|++..
T Consensus 79 ~~~~P~v~i~~~~~~KY~~~------~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 79 GFGYPAMVAINFRKMKFATL------KGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred ccCCCEEEEEecccCccccc------cCccCHHHHHHHHHHHHcCCccc
Confidence 77899999999 43499732 23799999999999999999854
No 8
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.24 E-value=4.7e-11 Score=93.17 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=75.4
Q ss_pred cccCCcEEEEEEccC-hhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC--Cceeecc
Q 023016 109 DDKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG--NENYLTV 184 (288)
Q Consensus 109 ~~~~~~~l~~lf~~~-~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~--~~KY~~~ 184 (288)
++.++.+++++|... .+..+.++..++++|++|+| +.|+|+|+++++++++.||+ ....+|++++++. +.+|.+.
T Consensus 8 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 8 YEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred hhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccccccCCC
Confidence 444456677777653 34578999999999999999 99999999999999999999 5568999999994 6788765
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh
Q 023016 185 IGSESIDEEDQGSQISRFLEGYR 207 (288)
Q Consensus 185 ~~~~~~~~e~t~e~I~~Fl~~fl 207 (288)
. ..++.++|.+|+++++
T Consensus 87 ~------~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 87 E------EELTAESLEEFVEDFL 103 (103)
T ss_pred c------cccCHHHHHHHHHhhC
Confidence 4 2369999999999874
No 9
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.99 E-value=5.3e-10 Score=104.26 Aligned_cols=194 Identities=16% Similarity=0.263 Sum_probs=131.3
Q ss_pred ccchhHHhhhcceeeEeeeccccHHHHhHcC-CCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCccc
Q 023016 25 PLMSPFLIQMRKFLTLLKMLDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT 103 (288)
Q Consensus 25 ~~~~~~~~~~~k~~~v~~~~~~seel~~~y~-~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~et 103 (288)
|+.-.|.........|.-+-+.|+++.-.|+ ....|++.||| |+...+++ .-+.+.|..||..+++|-+-..+..+
T Consensus 166 PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~kempaV~VFK--Detf~i~d-e~dd~dLseWinRERf~~fLa~dgfl 242 (468)
T KOG4277|consen 166 PLFDAFIDAASEKFSVARFFSASEEVAPEENDAKEMPAVAVFK--DETFEIED-EGDDEDLSEWINRERFPGFLAADGFL 242 (468)
T ss_pred cHHHHHHHHhhhheeeeeeeccccccCCcccchhhccceEEEc--cceeEEEe-cCchhHHHHHHhHhhccchhhcccch
Confidence 4444555566666667667777788776654 33469999999 55554443 22577899999999999998888887
Q ss_pred hhhhccccCCcEEEEEEcc----ChhhHHHHHHHHHHHHHhcCC-------cEEEEEeCcCchhHHhhcCCCCCCCCCeE
Q 023016 104 LNLLKDDKRKIVLAIVEDE----TEEKSQKLVTTLKAAASANRE-------LVFCYVGIKQFADFADTFEANKKSKLPKM 172 (288)
Q Consensus 104 ~~~l~~~~~~~~l~~lf~~----~~e~~e~~~~~l~~vAk~~rg-------l~Fv~VD~~~~~~~le~fGL~k~~~lPai 172 (288)
...+...++-+.++++... +..+..++.+..+++|+.+|+ ++|+|+|++++... +-+ ..-..|.+
T Consensus 243 L~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nq---ilM-~als~P~l 318 (468)
T KOG4277|consen 243 LAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQ---ILM-AALSEPHL 318 (468)
T ss_pred HHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHH---HHH-HhhcCCeE
Confidence 7764344333344444221 334567899999999999886 89999999865433 323 23356999
Q ss_pred EEEe-CCceeeccCCCCCCCCCCCHHHHHHHHHH----HhcCccccccccCCCCCCCceEEee
Q 023016 173 VVWD-GNENYLTVIGSESIDEEDQGSQISRFLEG----YREGRTEQKKVAGPSIFGFVNSLIG 230 (288)
Q Consensus 173 ~I~d-~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~----fl~Gklkp~iKSeP~~~~~v~~lVg 230 (288)
+|.| .+..|.+.+.. ....+.++|.+|+++ +.+|++.. .++....+++||++=
T Consensus 319 ~i~NtsnqeYfLse~d---~qikniedilqFientsegI~d~TieA--~GGd~iLqRiKRiaF 376 (468)
T KOG4277|consen 319 FIFNTSNQEYFLSEDD---PQIKNIEDILQFIENTSEGIDDETIEA--FGGDHILQRIKRIAF 376 (468)
T ss_pred EEEecCchheeeccCC---hhhhhHHHHHHHHhcccccccccceee--cCchHHHHHHHHHHH
Confidence 9999 78788764311 123688999999999 55555544 345566667776543
No 10
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.93 E-value=4.7e-08 Score=92.80 Aligned_cols=165 Identities=18% Similarity=0.279 Sum_probs=104.9
Q ss_pred eeccccHHHHhHcCCCCCCeEEEEccCCCCcccccC-CCCHHHHHHHHHHcCCCCeeecCccchhhh-ccccCCcEEEEE
Q 023016 42 KMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTLNLL-KDDKRKIVLAIV 119 (288)
Q Consensus 42 ~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g-~f~~~~L~~FI~~nslPLV~e~n~et~~~l-~~~~~~~~l~~l 119 (288)
++-.|.+.++.+.++. ..-|-.|+||.++.+...| +.+.++|.+||+.|.-|....+++++.-.+ .....+.+++-+
T Consensus 197 FfAtfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaF 275 (383)
T PF01216_consen 197 FFATFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAF 275 (383)
T ss_dssp EEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE
T ss_pred EEEEecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEE
Confidence 3444445566666663 6689999999888877765 578899999999999999999999885432 233345665555
Q ss_pred EccChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCchhH----HhhcCCCCCCCCCeEEEEe-CC--cee-eccCCCC
Q 023016 120 EDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADF----ADTFEANKKSKLPKMVVWD-GN--ENY-LTVIGSE 188 (288)
Q Consensus 120 f~~~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~~~----le~fGL~k~~~lPai~I~d-~~--~KY-~~~~~~~ 188 (288)
....+.+=-++.+.++++|+.+.+ +.++|+|-+.|+=. -+.||+ .-. -|.|.+.| .+ .-| .++. .
T Consensus 276 aee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~I-dl~-~PqIGvVnvtdadsvW~dm~d-~- 351 (383)
T PF01216_consen 276 AEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGI-DLS-RPQIGVVNVTDADSVWMDMDD-D- 351 (383)
T ss_dssp --TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT--TT-S-EEEEEETTTSEEEEC-STT-T-
T ss_pred ecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCc-ccc-CCceeEEeccccccchhccCC-c-
Confidence 444555556899999999999887 99999999998743 356788 433 49999999 33 244 3432 1
Q ss_pred CCCCCCCHHHHHHHHHHHhcCcccc
Q 023016 189 SIDEEDQGSQISRFLEGYREGRTEQ 213 (288)
Q Consensus 189 ~~~~e~t~e~I~~Fl~~fl~Gklkp 213 (288)
.+.-|++.++.|++++++|++.+
T Consensus 352 --~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 352 --DDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp --SS---HHHHHHHHHHHHCTCCTB
T ss_pred --ccCCcHHHHHHHHHHHhcCCCCC
Confidence 12348999999999999999865
No 11
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.90 E-value=9e-09 Score=96.13 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=114.3
Q ss_pred EEEEccCCCCc-ccccCCCC-HHHHHHHHHHcCCCCeeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHH
Q 023016 62 LVALQPSYNEH-NIFYGPFD-EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAAS 139 (288)
Q Consensus 62 Ivlfk~~dee~-~~f~g~f~-~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk 139 (288)
+.+|++.-.+. ..|.|+++ -+.|+.||...+.|||.|+|-+|.+. ..+-++|.+++|...++. +..+.--..+|+
T Consensus 176 ~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EE--LtEEGlPflILf~~kdD~-~s~k~F~~aI~R 252 (375)
T KOG0912|consen 176 ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEE--LTEEGLPFLILFRKKDDK-ESEKIFKNAIAR 252 (375)
T ss_pred eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHH--HhhcCCceEEEEecCCcc-cHHHHHHHHHHH
Confidence 77788643222 26999875 58899999999999999999999998 566788989888764321 122222233444
Q ss_pred hcC---C-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHHhcCcccccc
Q 023016 140 ANR---E-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKK 215 (288)
Q Consensus 140 ~~r---g-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gklkp~i 215 (288)
+.- . ++|+..|+..+.+.+..+|- ..+++|.|+|..-...|.++.. .+-..+..|++|+.+.-+|++-+..
T Consensus 253 eL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~f----~di~~pGkLkqFv~DL~sgklHref 327 (375)
T KOG0912|consen 253 ELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPDF----NDINIPGKLKQFVADLHSGKLHREF 327 (375)
T ss_pred HhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCch----hhhcCccHHHHHHHHHhCchhhHHh
Confidence 443 3 99999999999999999998 7789999998774457877652 3345778999999999999998876
Q ss_pred ccCCCC
Q 023016 216 VAGPSI 221 (288)
Q Consensus 216 KSeP~~ 221 (288)
--+|..
T Consensus 328 H~~~d~ 333 (375)
T KOG0912|consen 328 HEGPDP 333 (375)
T ss_pred hcCCCC
Confidence 666543
No 12
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.62 E-value=1.6e-06 Score=77.38 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=113.8
Q ss_pred hhcccchhHHhhhcc--eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcC--CCCee
Q 023016 22 NLLPLMSPFLIQMRK--FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF--LPLSV 97 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k--~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ns--lPLV~ 97 (288)
.+.|.+..+-....+ +..+.+-.+-..+++..|++...|++++|++.......|.|....+.|.+||+... -+.-.
T Consensus 39 ~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~ 118 (215)
T TIGR02187 39 ETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEP 118 (215)
T ss_pred HHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 344555544333333 34555555578999999999999999999963322235778777788989988651 12233
Q ss_pred ecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC
Q 023016 98 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 177 (288)
Q Consensus 98 e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~ 177 (288)
.+++.+...+...+.+..+.++....-..-......++++|.++..+.|..+|.+.++...+.+|+ ..+|++++.++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V---~~vPtl~i~~~ 195 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV---MSVPKIVINKG 195 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC---ccCCEEEEecC
Confidence 455555555444445554443333322334466678888888865599999999999988999999 47899998765
Q ss_pred CceeeccCCCCCCCCCCCHHHHHHHHHH
Q 023016 178 NENYLTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 178 ~~KY~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
+.+| .+ ..+.+++.+|+++
T Consensus 196 ~~~~--~G-------~~~~~~l~~~l~~ 214 (215)
T TIGR02187 196 VEEF--VG-------AYPEEQFLEYILS 214 (215)
T ss_pred CEEE--EC-------CCCHHHHHHHHHh
Confidence 4433 23 3567888888764
No 13
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=9.8e-06 Score=80.85 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=102.9
Q ss_pred cHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCc-cchhhhccccC-CcEEEEEEccCh
Q 023016 47 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKR-KIVLAIVEDETE 124 (288)
Q Consensus 47 seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~-et~~~l~~~~~-~~~l~~lf~~~~ 124 (288)
+.+++++|++.++|++.+||+... ...|.|+.+.+.|..|++..+.|.+.++.. +.+.. +.+. ...++-+|.+..
T Consensus 88 ~~~~~~~y~v~gyPTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~--~l~~~~~~vig~F~d~~ 164 (493)
T KOG0190|consen 88 ESDLASKYEVRGYPTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEE--FLSKKDVVVIGFFKDLE 164 (493)
T ss_pred hhhhHhhhcCCCCCeEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHh--hccCCceEEEEEecccc
Confidence 378999999999999999996432 578999999999999999999999999985 44554 2222 222222333221
Q ss_pred hhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe-CCce-eeccCCCCCCCCCCCHHHHHH
Q 023016 125 EKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD-GNEN-YLTVIGSESIDEEDQGSQISR 201 (288)
Q Consensus 125 e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d-~~~K-Y~~~~~~~~~~~e~t~e~I~~ 201 (288)
... +.+..+|...++ +.|++.+.. .++..+++ +....|.+++.+ .+.+ +.+.+ .++.+.|.+
T Consensus 165 --~~~--~~~~~~a~~l~~d~~F~~ts~~---~~~~~~~~-~~~~~~~i~l~kk~d~~~~~~~~-------~~~~~~l~~ 229 (493)
T KOG0190|consen 165 --SLA--ESFFDAASKLRDDYKFAHTSDS---DVAKKLEL-NTEGTFPIVLFKKFDELLVKYDG-------SFTPELLKK 229 (493)
T ss_pred --cch--HHHHHHHHhccccceeeccCcH---hHHhhccC-CCCCcceEEeccccccchhhccc-------ccCHHHHHH
Confidence 112 567777777888 999955443 56777888 333366677777 3332 23322 689999999
Q ss_pred HHHHHhcCcc
Q 023016 202 FLEGYREGRT 211 (288)
Q Consensus 202 Fl~~fl~Gkl 211 (288)
|++....+-+
T Consensus 230 Fi~~~~~plv 239 (493)
T KOG0190|consen 230 FIQENSLPLV 239 (493)
T ss_pred HHHHhccccc
Confidence 9998876554
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.22 E-value=3.6e-05 Score=59.03 Aligned_cols=99 Identities=7% Similarity=0.162 Sum_probs=74.3
Q ss_pred eeecCccchhhhccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
|..+|.+++...... ...++++.|+ +.-..-..+...+.++|+.+++ +.|+.+|.+.+...++.+++ ..+|+++
T Consensus 1 v~~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEE
T ss_pred CEECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEE
Confidence 456788888773222 2344444444 3445678899999999999997 99999999988889999999 5799999
Q ss_pred EEeCCc-eeeccCCCCCCCCCCCHHHHHHHHHH
Q 023016 174 VWDGNE-NYLTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 174 I~d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
+++++. ...+.+ ..+.++|.+|++.
T Consensus 77 ~~~~g~~~~~~~g-------~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVKRYNG-------PRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEEEEES-------SSSHHHHHHHHHH
T ss_pred EEECCcEEEEEEC-------CCCHHHHHHHHHc
Confidence 999543 223333 4799999999985
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.06 E-value=5.7e-05 Score=58.98 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCeeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 94 PLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 94 PLV~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
|-+.++|.+++..+.. +.+.++++.|+. .-..-..+...++++|+++++ +.|+.+|.+.+..+.+.+|+ ..+|+
T Consensus 1 ~~v~~l~~~~f~~~i~-~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVL-NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHh-cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 4567888888876312 233344544543 334567889999999999988 99999999999888899999 57999
Q ss_pred EEEEeC--CceeeccCCCCCCCCCCC-HHHHHHHH
Q 023016 172 MVVWDG--NENYLTVIGSESIDEEDQ-GSQISRFL 203 (288)
Q Consensus 172 i~I~d~--~~KY~~~~~~~~~~~e~t-~e~I~~Fl 203 (288)
++++.+ ...+.+.+ ..+ .++|.+|+
T Consensus 77 ~~~~~~g~~~~~~~~G-------~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-------WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-------CCCCHHHHHhhC
Confidence 999984 33444443 345 88888875
No 16
>PTZ00102 disulphide isomerase; Provisional
Probab=98.02 E-value=0.00038 Score=68.44 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=102.0
Q ss_pred HHhHcCCCCCCeEEEEccCCCCcccccCC----CCHHHHHHHHHHcC-----------------CCCeeecCccchhhhc
Q 023016 50 TMVLYDFDKVPALVALQPSYNEHNIFYGP----FDEEFLEEFIKQNF-----------------LPLSVPINQDTLNLLK 108 (288)
Q Consensus 50 l~~~y~~~~~PsIvlfk~~dee~~~f~g~----f~~~~L~~FI~~ns-----------------lPLV~e~n~et~~~l~ 108 (288)
++.++++...|++++... .+ ...+.++ .+.+.|.+|++.-. -..+..++.+++...
T Consensus 294 ~~~~~gi~~~P~~~i~~~-~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~- 370 (477)
T PTZ00102 294 AKEHLLIEEFPGLAYQSP-AG-RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEI- 370 (477)
T ss_pred HHHhcCcccCceEEEEcC-Cc-ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHH-
Confidence 677889999999888763 22 3334443 57899999999521 123566777777762
Q ss_pred cccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCce--ee
Q 023016 109 DDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN--YL 182 (288)
Q Consensus 109 ~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~K--Y~ 182 (288)
..+.+.++++.|+. --..-..+...++++|+.+++ +.|+.+|.+.++...+.+++ ...|++++++.+.+ ..
T Consensus 371 v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v---~~~Pt~~~~~~~~~~~~~ 447 (477)
T PTZ00102 371 VFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW---SAFPTILFVKAGERTPIP 447 (477)
T ss_pred HhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC---cccCeEEEEECCCcceeE
Confidence 12334444444443 223456778889999999875 89999999888777788888 47899999984332 23
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhcC
Q 023016 183 TVIGSESIDEEDQGSQISRFLEGYREG 209 (288)
Q Consensus 183 ~~~~~~~~~~e~t~e~I~~Fl~~fl~G 209 (288)
+.+ ..+.++|.+|++.....
T Consensus 448 ~~G-------~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 448 YEG-------ERTVEGFKEFVNKHATN 467 (477)
T ss_pred ecC-------cCCHHHHHHHHHHcCCC
Confidence 333 57999999999997653
No 17
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.99 E-value=0.00047 Score=66.94 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=103.7
Q ss_pred HHHHhHcCCC--CCCeEEEEccCCCCcccccC-CCCHHHHHHHHHHcC-----------------CCCeeecCccchhhh
Q 023016 48 EDTMVLYDFD--KVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNF-----------------LPLSVPINQDTLNLL 107 (288)
Q Consensus 48 eel~~~y~~~--~~PsIvlfk~~dee~~~f~g-~f~~~~L~~FI~~ns-----------------lPLV~e~n~et~~~l 107 (288)
..++..+++. ..|.++++.........+.+ .++.+.|.+||..-. -..+..++..++..+
T Consensus 280 ~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~ 359 (462)
T TIGR01130 280 GRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEI 359 (462)
T ss_pred HHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHH
Confidence 5678888887 58999999864323344554 688999999999731 113445666777663
Q ss_pred ccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC----cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCce--
Q 023016 108 KDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN-- 180 (288)
Q Consensus 108 ~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg----l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~K-- 180 (288)
... .+.++++.|. +.-..-..+...++++|+.+++ +.|+.+|.+.++ ... +++ ...|+++++..+.+
T Consensus 360 v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i---~~~Pt~~~~~~~~~~~ 433 (462)
T TIGR01130 360 VLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEV---EGFPTIKFVPAGKKSE 433 (462)
T ss_pred hcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCc---cccCEEEEEeCCCCcC
Confidence 122 2344444444 3334556788889999998875 889999987553 333 666 57899999984433
Q ss_pred -eeccCCCCCCCCCCCHHHHHHHHHHHhcCcccc
Q 023016 181 -YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 213 (288)
Q Consensus 181 -Y~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gklkp 213 (288)
..+.+ ..+.++|.+|++.....+++.
T Consensus 434 ~~~~~g-------~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 434 PVPYDG-------DRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred ceEecC-------cCCHHHHHHHHHhcCCCCCcC
Confidence 12222 468999999999988777764
No 18
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.96 E-value=0.00015 Score=56.01 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=69.8
Q ss_pred eeecCccchhhhccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
|.++|..++...-. ..+.+++++|. +.-..-..+...+.++|+++++ +.|+.+|.+.++.+.+.||+ ...|.++
T Consensus 2 v~~l~~~~~~~~i~-~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVL-NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHh-cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 45677777765211 22333343444 3344567888899999999998 99999999988888999999 4799999
Q ss_pred EEeCC--ceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 174 VWDGN--ENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 174 I~d~~--~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
+++.+ ..+.+.+ +.+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~g-------~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQG-------GRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCC-------CCCHHHHHHHh
Confidence 99843 3445544 57899999886
No 19
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00032 Score=67.93 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=121.0
Q ss_pred hcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCc
Q 023016 23 LLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ 101 (288)
Q Consensus 23 ~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~ 101 (288)
+.|.+....-..+. +....|-.+-+.+++.+|++.++|++++|++. .+...|.|..+.+.+..|+....-+.+.....
T Consensus 65 l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383)
T KOG0191|consen 65 LAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVE 143 (383)
T ss_pred hchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccC
Confidence 44444444344444 44444666777999999999999999999986 56677888889999999999976655554443
Q ss_pred --------cchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcC--C-cEEEEEeCcCchhHHhhcCCCCCCCCC
Q 023016 102 --------DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSKLP 170 (288)
Q Consensus 102 --------et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~r--g-l~Fv~VD~~~~~~~le~fGL~k~~~lP 170 (288)
+++...........++.++.+--..-..+...++++|+.+. + +..+-+|.++.....+.+++ ..+|
T Consensus 144 ~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v---~~~P 220 (383)
T KOG0191|consen 144 GEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEV---RGYP 220 (383)
T ss_pred CceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcc---cCCc
Confidence 34443211222333343433322344566788999999886 3 88888898867677888888 5789
Q ss_pred eEEEEeCCce--eeccCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 023016 171 KMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGR 210 (288)
Q Consensus 171 ai~I~d~~~K--Y~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gk 210 (288)
++.+...+.+ |.+. ..-+.+.|.+|+++...-.
T Consensus 221 t~~~f~~~~~~~~~~~-------~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYS-------GLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred eEEEecCCCccccccc-------ccccHHHHHHHHHhhcCCC
Confidence 9987774333 2222 2468999999999987764
No 20
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.94 E-value=0.00014 Score=56.56 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCeeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 94 PLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 94 PLV~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
|-+.++|.+++... ...+.+.++.|+. .-..-..+...+.++|+.+++ +.|+.+|.++++.+.+.+++ ..+|+
T Consensus 1 ~~~~~l~~~~f~~~--v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 75 (101)
T cd03003 1 PEIVTLDRGDFDAA--VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPS 75 (101)
T ss_pred CCeEEcCHhhHHHH--hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCE
Confidence 44678888888873 2333444444543 334567889999999999999 99999999999888899999 57899
Q ss_pred EEEEeCCc-eeeccCCCCCCCCCCCHHHHHHH
Q 023016 172 MVVWDGNE-NYLTVIGSESIDEEDQGSQISRF 202 (288)
Q Consensus 172 i~I~d~~~-KY~~~~~~~~~~~e~t~e~I~~F 202 (288)
+.++..+. ...+.+ ..+.+.|.+|
T Consensus 76 ~~~~~~g~~~~~~~G-------~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPEKYYG-------DRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcccCCC-------CCCHHHHHhh
Confidence 99888432 222322 5688888877
No 21
>PRK09381 trxA thioredoxin; Provisional
Probab=97.91 E-value=0.00025 Score=55.83 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=73.0
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
|.+++.+++... ..+.+.++++.|+. .-..-..+...++++|+++++ +.|+.+|.+..+...+.|++ ..+|+++
T Consensus 5 v~~~~~~~~~~~-v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTD-VLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHH-HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 567777777641 12223344444443 334567888999999999999 99999999988888888999 4799999
Q ss_pred EEeCC-ceeeccCCCCCCCCCCCHHHHHHHHHHHh
Q 023016 174 VWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYR 207 (288)
Q Consensus 174 I~d~~-~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl 207 (288)
+++++ ..+.+.+ ..+.+.|.+|++..+
T Consensus 81 ~~~~G~~~~~~~G-------~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVG-------ALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecC-------CCCHHHHHHHHHHhc
Confidence 99844 3454443 467889999998765
No 22
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.66 E-value=0.0005 Score=52.60 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=67.4
Q ss_pred CccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEE
Q 023016 100 NQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 175 (288)
Q Consensus 100 n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~ 175 (288)
|.+++... ...+.++++.|.. .-.....+...+.++|+.+++ +.|+.+|.+....+.+.||+ ...|+++++
T Consensus 2 ~~~~~~~~--~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 2 TASNFDDI--VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred chhhHHHH--hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 45566652 2234444444443 334456677888999999886 99999999988888899999 579999999
Q ss_pred eCCc-eeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 176 DGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 176 d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
+.+. .+.+.+ ..+.+++..|+++.
T Consensus 77 ~~~~~~~~~~g-------~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDYEG-------GRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceeecC-------CCCHHHHHHHHHhc
Confidence 8443 444443 57899999999874
No 23
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.65 E-value=0.00041 Score=55.93 Aligned_cols=100 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred ecCccchhhhccccCCcEEEEEEccChh-hHHHHHHHHHHHHHhc------CC----cEEEEE-eCcCchhHHhhcCCCC
Q 023016 98 PINQDTLNLLKDDKRKIVLAIVEDETEE-KSQKLVTTLKAAASAN------RE----LVFCYV-GIKQFADFADTFEANK 165 (288)
Q Consensus 98 e~n~et~~~l~~~~~~~~l~~lf~~~~e-~~e~~~~~l~~vAk~~------rg----l~Fv~V-D~~~~~~~le~fGL~k 165 (288)
++|+.+...+ +...+++++.+..++ +.+..++.++++|++. +| +.|... +.+--+..-++.+|
T Consensus 3 ~Lse~~a~~L---n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL-- 77 (116)
T cd03071 3 ELSESNAVQL---NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNL-- 77 (116)
T ss_pred cccHHHHHhh---cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCC--
Confidence 4555555542 223344444433444 4777888888877753 22 555554 43333344466688
Q ss_pred CCCCCeEEEEe-C-CceeeccCCCCCCCCCCCHHHHHHHHHHHhc
Q 023016 166 KSKLPKMVVWD-G-NENYLTVIGSESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 166 ~~~lPai~I~d-~-~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
....|.++|.| + ..||.++ .+++|.+.+++|+.+|++
T Consensus 78 ~d~~P~LviLDip~r~~~v~~------~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 78 PEAAPLLTILDMSARAKYVMD------VEEITPAIVEAFVSDFLA 116 (116)
T ss_pred CccCceEEEEeccccceEeCc------hHhcCHHHHHHHHHHhhC
Confidence 36789999999 4 4588775 358999999999999974
No 24
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.65 E-value=0.00087 Score=51.90 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=70.2
Q ss_pred eeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
|.++|.+++..+ .+.+ .++.+...--..-..+...+.++|+.+++ +.|+.+|.+++...++.+++ ..+|++.
T Consensus 3 v~~l~~~~f~~~--~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLV--LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHH--hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 678888888873 3333 44444444334556788889999998875 99999999988888888998 5799999
Q ss_pred EEeCCceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 174 VWDGNENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 174 I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
++.++....+.+ ..+.++|.+|++
T Consensus 77 ~~~~g~~~~~~G-------~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAKDGVFRRYQG-------PRDKEDLISFIE 100 (101)
T ss_pred EeCCCCEEEecC-------CCCHHHHHHHHh
Confidence 887544333433 468899999986
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.61 E-value=0.00086 Score=52.41 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=68.8
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcC--chhHHhhcCCCCCCCCCe
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 171 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~--~~~~le~fGL~k~~~lPa 171 (288)
+.++|.+++... ..+.+.+.++.|+. .-..-..+...+.++|+.+++ +.|+.+|.+. ...+.+.|++ ..+|+
T Consensus 2 v~~l~~~~~~~~-i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKV-VHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHH-HhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 567888888763 12234444444543 334456788889999999998 9999999887 6778889999 57899
Q ss_pred EEEEeCCc------eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 172 MVVWDGNE------NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 172 i~I~d~~~------KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
+.+++++. .+.+.+ ..+.+++.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G-------~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNG-------ERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccC-------ccCHHHHHHHh
Confidence 99999332 223333 57889999987
No 26
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.56 E-value=0.00016 Score=55.70 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=53.6
Q ss_pred ccchhHHhhhccee-eEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 25 PLMSPFLIQMRKFL-TLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 25 ~~~~~~~~~~~k~~-~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
|.+..|....+... .+.++...+.++..++... .|++++||++++....|+|+++.++|.+||..+
T Consensus 31 ~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 31 EEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK-PGSVVLFKPFEEEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred HHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC-CCceEEeCCcccCCccCCCCCCHHHHHHHHHhC
Confidence 45666776666663 5777777888998888876 589999999888888899999999999999864
No 27
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.56 E-value=0.0012 Score=53.54 Aligned_cols=100 Identities=8% Similarity=0.005 Sum_probs=70.4
Q ss_pred CCeeecCccchhhh-ccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHH-hhcCCCCCCCC
Q 023016 94 PLSVPINQDTLNLL-KDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSKL 169 (288)
Q Consensus 94 PLV~e~n~et~~~l-~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~l-e~fGL~k~~~l 169 (288)
+-|.+++.+|+... ...+...++++.|+ .--.....+...+.++|+++++ +.|+-||.+++...+ +.+++ ..+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~~ 85 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FYF 85 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---ccc
Confidence 45788888888762 11233334444444 3344567899999999999999 999999999888777 58898 579
Q ss_pred CeEEEEeC-CceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 170 PKMVVWDG-NENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 170 Pai~I~d~-~~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
|++.++.+ .....+.+ ..+.+.|..|+
T Consensus 86 PTl~lf~~g~~~~~y~G-------~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGPIEYKG-------PMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccceEEeC-------CCCHHHHHhhC
Confidence 99998883 33222333 46888887763
No 28
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.56 E-value=0.0013 Score=49.96 Aligned_cols=81 Identities=9% Similarity=0.130 Sum_probs=59.5
Q ss_pred EEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCCCCC
Q 023016 115 VLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESID 191 (288)
Q Consensus 115 ~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~~~~ 191 (288)
+++++|+. .-.....+...++++++.+++ +.|+.+|.+..+...+.||+ ..+|++++++.+. .+...+
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~~~g------ 86 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKNGKEVDRSVG------ 86 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeCCcEeeeecC------
Confidence 33444433 334456777889999999987 99999999988888899999 4799999998443 233322
Q ss_pred CCCCHHHHHHHHHH
Q 023016 192 EEDQGSQISRFLEG 205 (288)
Q Consensus 192 ~e~t~e~I~~Fl~~ 205 (288)
..+.+.+.+|+++
T Consensus 87 -~~~~~~l~~~l~~ 99 (101)
T TIGR01068 87 -ALPKAALKQLINK 99 (101)
T ss_pred -CCCHHHHHHHHHh
Confidence 3578899999876
No 29
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.54 E-value=0.001 Score=54.81 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhc--CC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHH
Q 023016 129 KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 129 ~~~~~l~~vAk~~--rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
.....+.++|.++ .+ +.|+-||.+++.+.++.||+ ..+|+++++.+++.-.+.+ ..+.+.|.+|+++
T Consensus 48 ~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~~iPTl~lfk~G~~v~~~G-------~~~~~~l~~~l~~ 117 (120)
T cd03065 48 QMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---DEEDSIYVFKDDEVIEYDG-------EFAADTLVEFLLD 117 (120)
T ss_pred cchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---ccccEEEEEECCEEEEeeC-------CCCHHHHHHHHHH
Confidence 3445667777777 66 99999999999999999999 5799999998655333443 4689999999987
Q ss_pred Hh
Q 023016 206 YR 207 (288)
Q Consensus 206 fl 207 (288)
..
T Consensus 118 ~~ 119 (120)
T cd03065 118 LI 119 (120)
T ss_pred Hh
Confidence 64
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.54 E-value=0.00084 Score=51.63 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=66.8
Q ss_pred eeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCC----cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg----l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
+.++|.+++... ...+..++.+..+.-..-..+...++++|+++++ +.|+.+|.+......+.|++ ..+|+
T Consensus 2 ~~~l~~~~f~~~--~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHH--IAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT 76 (102)
T ss_pred eeECCHHHHHHH--hhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence 457787787762 2333333333333334456778889999998864 89999999888888889998 57999
Q ss_pred EEEEeCC-ceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 172 MVVWDGN-ENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 172 i~I~d~~-~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
++++.++ ....+.+ ..+.++|.+|+
T Consensus 77 ~~~~~~g~~~~~~~G-------~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKYKG-------TRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEeeC-------CCCHHHHHhhC
Confidence 9988843 3333433 46788888875
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=97.52 E-value=0.0013 Score=54.86 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=70.6
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
+.+.+.+++.. ..+.+.++++.|+. .-..-..+...|.++|+++.+ +.|+.+|.+..+.+.+.||+ ..+|+++
T Consensus 37 ~i~~~~~~~~~--~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptli 111 (139)
T PRK10996 37 VINATGETLDK--LLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIM 111 (139)
T ss_pred CEEcCHHHHHH--HHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEE
Confidence 33455555555 22334444444543 334556778899999999988 99999999998899999999 5799999
Q ss_pred EEeCCcee-eccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 174 VWDGNENY-LTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 174 I~d~~~KY-~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
++++++.. .+.+ ..+.++|.+|++..
T Consensus 112 i~~~G~~v~~~~G-------~~~~e~l~~~l~~~ 138 (139)
T PRK10996 112 IFKNGQVVDMLNG-------AVPKAPFDSWLNEA 138 (139)
T ss_pred EEECCEEEEEEcC-------CCCHHHHHHHHHHh
Confidence 98855433 3333 47889999999864
No 32
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.46 E-value=0.0016 Score=49.98 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=67.3
Q ss_pred eeecCccchhhhccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcC--C-cEEEEEeCcC-chhHHhhcCCCCCCCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLP 170 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~r--g-l~Fv~VD~~~-~~~~le~fGL~k~~~lP 170 (288)
+.+++.+++..+ ..+.+.++++.|. ..-..-.++...++++|+.++ + +.|+.+|.+. ++.+.+.|++ ...|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P 77 (105)
T cd02998 2 VVELTDSNFDKV-VGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFP 77 (105)
T ss_pred eEEcchhcHHHH-hcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcC
Confidence 356777777662 1222333444443 333445678889999999987 4 9999999998 8888999999 5789
Q ss_pred eEEEEeCC--ceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 171 KMVVWDGN--ENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 171 ai~I~d~~--~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
++++++.+ ..+.+.+ ..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g-------~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEG-------GRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCC-------ccCHHHHHhhC
Confidence 99998833 3444433 57889998885
No 33
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.43 E-value=0.002 Score=49.43 Aligned_cols=96 Identities=8% Similarity=0.077 Sum_probs=66.0
Q ss_pred eeecCccchhhhccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
|.+++.+++....... +.++++.|+ +.-.....+...++++|+.+++ +.|+.+|.+.+ +....+++ ...|+
T Consensus 2 v~~l~~~~f~~~i~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDS-DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCC-CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 6678888887631222 233444444 3344567889999999999876 89999998866 45666777 57899
Q ss_pred EEEEeCCc---eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 172 MVVWDGNE---NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 172 i~I~d~~~---KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
+.++..+. .+.+.+ +.+.++|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g-------~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEG-------DRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccC-------CcCHHHHHhhC
Confidence 99998332 333433 57888998885
No 34
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.42 E-value=0.0035 Score=60.14 Aligned_cols=160 Identities=13% Similarity=0.039 Sum_probs=95.1
Q ss_pred cceeeEeee-ccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCccchhhhc-cccC
Q 023016 35 RKFLTLLKM-LDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLK-DDKR 112 (288)
Q Consensus 35 ~k~~~v~~~-~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~et~~~l~-~~~~ 112 (288)
++-.-+|.. ..-..++++++++...++|.+|| +++...|+|.++++.|..||..--=.+|..+|.+.-...+ .++-
T Consensus 88 ~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfk--d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied 165 (383)
T PF01216_consen 88 DKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFK--DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIED 165 (383)
T ss_dssp GCTEEEEEEETTTTHHHHHHHT--STTEEEEEE--TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--S
T ss_pred ccCcceEEeccHHHHHHHHhcCccccCcEEEEE--CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhccc
Confidence 343444433 33347899999999999999999 4667889999999999999999766779899876533211 1222
Q ss_pred CcEEEEEEccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC--CceeeccCCCCC
Q 023016 113 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG--NENYLTVIGSES 189 (288)
Q Consensus 113 ~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~--~~KY~~~~~~~~ 189 (288)
.+.++-+|.+.+ + +..+.|.+||..|+. +.|..+-.. .++..+|| + +--+-.+.. ++--..+.
T Consensus 166 ~~klIGyFk~~~--s-~~yk~FeeAAe~F~p~IkFfAtfd~---~vAk~L~l-K---~nev~fyepF~~~pi~ip~---- 231 (383)
T PF01216_consen 166 DIKLIGYFKSED--S-EHYKEFEEAAEHFQPYIKFFATFDK---KVAKKLGL-K---LNEVDFYEPFMDEPITIPG---- 231 (383)
T ss_dssp S-EEEEE-SSTT--S-HHHHHHHHHHHHCTTTSEEEEE-SH---HHHHHHT--S---TT-EEEE-TTSSSEEEESS----
T ss_pred ceeEEEEeCCCC--c-HHHHHHHHHHHhhcCceeEEEEecc---hhhhhcCc-c---ccceeeeccccCCCccCCC----
Confidence 233333343221 1 366789999999999 888776433 57888888 4 334555552 22112222
Q ss_pred CCCCCCHHHHHHHHHHHhcCccc
Q 023016 190 IDEEDQGSQISRFLEGYREGRTE 212 (288)
Q Consensus 190 ~~~e~t~e~I~~Fl~~fl~Gklk 212 (288)
...+.+.|.+|++.-..-.+.
T Consensus 232 --~p~~e~e~~~fi~~h~rptlr 252 (383)
T PF01216_consen 232 --KPYTEEELVEFIEEHKRPTLR 252 (383)
T ss_dssp --SS--HHHHHHHHHHT-S-SEE
T ss_pred --CCCCHHHHHHHHHHhchhHhh
Confidence 247899999999997776554
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.41 E-value=0.0019 Score=50.79 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=67.1
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcC------C-cEEEEEeCcCchhHHhhcCCCCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANR------E-LVFCYVGIKQFADFADTFEANKKS 167 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~r------g-l~Fv~VD~~~~~~~le~fGL~k~~ 167 (288)
|.+++.+++... .+...++++.|+. --..-..+...++++|+.++ + +.|+.+|.+++....+.||+ .
T Consensus 3 v~~l~~~~f~~~--i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~ 77 (108)
T cd02996 3 IVSLTSGNIDDI--LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---N 77 (108)
T ss_pred eEEcCHhhHHHH--HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---C
Confidence 678888888873 3333444444543 33445678888888887642 3 89999999998888999999 5
Q ss_pred CCCeEEEEeCCc--eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 168 KLPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 168 ~lPai~I~d~~~--KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
.+|++.++.++. ...+.+ .-+.+.|.+|+
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g-------~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRG-------QRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceecCC-------CCCHHHHHhhC
Confidence 789999888443 233332 45788888875
No 36
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.39 E-value=0.00032 Score=55.75 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=47.9
Q ss_pred ccchhHHhhhcce-eeEeeeccccHHHHhHcCCCCCCeEEEE------ccCCCCcccccCCCCHHHHHHHHHHcC
Q 023016 25 PLMSPFLIQMRKF-LTLLKMLDFSEDTMVLYDFDKVPALVAL------QPSYNEHNIFYGPFDEEFLEEFIKQNF 92 (288)
Q Consensus 25 ~~~~~~~~~~~k~-~~v~~~~~~seel~~~y~~~~~PsIvlf------k~~dee~~~f~g~f~~~~L~~FI~~ns 92 (288)
+.+..|+...... -...++..+++++..++++ .|++++| |++|++...|+|+++.+.|++||+.++
T Consensus 32 ~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~~ 104 (104)
T cd03069 32 KLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIRENI 104 (104)
T ss_pred hHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC--CCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhhC
Confidence 3445555554444 3445555666777777776 4789999 558888888999999999999999873
No 37
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.38 E-value=0.0019 Score=51.68 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=67.7
Q ss_pred CeeecCccchhhh-ccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeE
Q 023016 95 LSVPINQDTLNLL-KDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM 172 (288)
Q Consensus 95 LV~e~n~et~~~l-~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai 172 (288)
-+.+++.+++... ...+.+.++++.|+ +.-..-..+...++++|++++++.|+.+|.++. .+++.|++ ..+|++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~Pt~ 80 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVLPTL 80 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcCCEE
Confidence 3566666666542 11111234444444 333456788999999999998899999999977 77889999 579999
Q ss_pred EEEeCCce-eeccCCCCCCCCCCCHHHHHHHH
Q 023016 173 VVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 173 ~I~d~~~K-Y~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
+++.+++. ..+.+..+-..+.++.+.|++|+
T Consensus 81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99985432 22221111112467888888776
No 38
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.34 E-value=0.0041 Score=50.13 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=62.1
Q ss_pred cEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCCCC--
Q 023016 114 IVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESI-- 190 (288)
Q Consensus 114 ~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~~~-- 190 (288)
..+++++.+.-..-..+...++++|++++++.|+.+|.++....++.|++ ..+|+++++.+++ .....+ ...+
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l~fk~G~~v~~~~g-~~~~~~ 99 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVILFKNGKTVDRIVG-FEELGG 99 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEEEEECCEEEEEEEC-ccccCC
Confidence 34444444444456788899999999998899999999999889999999 5799999998442 222211 1111
Q ss_pred CCCCCHHHHHHHH
Q 023016 191 DEEDQGSQISRFL 203 (288)
Q Consensus 191 ~~e~t~e~I~~Fl 203 (288)
.++++.++++.|+
T Consensus 100 ~~~~~~~~~e~~~ 112 (113)
T cd02989 100 KDDFSTETLEKRL 112 (113)
T ss_pred CCCCCHHHHHHHh
Confidence 2478899999886
No 39
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.25 E-value=0.0042 Score=56.46 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=76.1
Q ss_pred CCeeecCccchhhh-ccc--cCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCC
Q 023016 94 PLSVPINQDTLNLL-KDD--KRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSK 168 (288)
Q Consensus 94 PLV~e~n~et~~~l-~~~--~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~ 168 (288)
..+.++|.+++..+ ... ....+.++.|+ +.-..-..+...+.++|+.+++ +.|+.+|.++++...+.|++ ..
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---KG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---Cc
Confidence 34788888888763 111 01223334444 3334456788889999999999 99999999998888999999 57
Q ss_pred CCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHHhc
Q 023016 169 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 169 lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
+|++.+++++..+.+.. .+.+.++|.+|+.+-..
T Consensus 107 ~PTl~~f~~G~~v~~~~------G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEG------GDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEEeeC------CCCCHHHHHHHHHHHHH
Confidence 89999998555444333 25789999999988664
No 40
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.24 E-value=0.0028 Score=51.62 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=60.5
Q ss_pred eeecCccchhhhccccCCcEEEEEEccC---hhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCe
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDET---EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 171 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~---~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPa 171 (288)
..+++..|++.. ...+.+.++.|... -.+...+...|.++|++|.+ +.|+.+|.++++..+..||+ ..+|+
T Consensus 12 ~~~~~~~~~~~~--~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPT 86 (111)
T cd02965 12 WPRVDAATLDDW--LAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPA 86 (111)
T ss_pred CcccccccHHHH--HhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCE
Confidence 446677777762 23333445555543 35678899999999999999 99999999999999999999 57999
Q ss_pred EEEEeCCc
Q 023016 172 MVVWDGNE 179 (288)
Q Consensus 172 i~I~d~~~ 179 (288)
++++.+++
T Consensus 87 li~fkdGk 94 (111)
T cd02965 87 LLFFRDGR 94 (111)
T ss_pred EEEEECCE
Confidence 99998554
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.20 E-value=0.004 Score=46.69 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=63.4
Q ss_pred cCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcC--C-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEE
Q 023016 99 INQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 174 (288)
Q Consensus 99 ~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~r--g-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I 174 (288)
+|..++.. ....+.+.+++|.. .-.....+...++++|+.++ + +.|+.+|.+....+.+.+|+ ...|++++
T Consensus 3 l~~~~~~~--~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 3 LTDDNFDE--LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred ccHHHHHH--HHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 45555554 22222244444443 34456788889999999994 5 99999999988888999999 57899999
Q ss_pred EeCC--ceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 175 WDGN--ENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 175 ~d~~--~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
++++ ....+.+ ..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~g-------~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKYEG-------PRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccCCC-------CcCHHHHHhhC
Confidence 9844 2233322 45788888774
No 42
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.16 E-value=0.0069 Score=46.27 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=59.9
Q ss_pred cEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCcee-eccCCCCCC
Q 023016 114 IVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSESI 190 (288)
Q Consensus 114 ~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY-~~~~~~~~~ 190 (288)
.++++.|. +.-..-..+...+.++|+.+++ +.|+.+|.+......+.|++ ..+|++++++++... .+.+
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~~g----- 84 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGFQG----- 84 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeeecC-----
Confidence 34444444 3334456788889999999998 99999999999888999999 479999999844322 2322
Q ss_pred CCCCCHHHHHHHHH
Q 023016 191 DEEDQGSQISRFLE 204 (288)
Q Consensus 191 ~~e~t~e~I~~Fl~ 204 (288)
..+.++|..|++
T Consensus 85 --~~~~~~l~~~l~ 96 (96)
T cd02956 85 --AQPEEQLRQMLD 96 (96)
T ss_pred --CCCHHHHHHHhC
Confidence 467889988874
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.14 E-value=0.0067 Score=47.45 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=60.9
Q ss_pred CcEEEEEEccChhhHHHHHHHHHHHHHhcCC----cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCC
Q 023016 113 KIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE 188 (288)
Q Consensus 113 ~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg----l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~ 188 (288)
+..++.+..+.-..-......+.++|+.+++ +.++.+|.+.++.+.+.|++ ..+|++++++++..+.+.+
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~~~~~~~~G--- 89 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKGDLAYNYRG--- 89 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcCCCceeecC---
Confidence 3333333333334456777788889988842 88999999888888899999 4789999998554454443
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 023016 189 SIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 189 ~~~~e~t~e~I~~Fl~~f 206 (288)
..+.+.|.+|+++.
T Consensus 90 ----~~~~~~l~~~~~~~ 103 (104)
T cd03000 90 ----PRTKDDIVEFANRV 103 (104)
T ss_pred ----CCCHHHHHHHHHhh
Confidence 47899999999874
No 44
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.14 E-value=0.0053 Score=53.53 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=73.7
Q ss_pred CCCCeeecCc-cchhhh-ccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCC
Q 023016 92 FLPLSVPINQ-DTLNLL-KDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 168 (288)
Q Consensus 92 slPLV~e~n~-et~~~l-~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~ 168 (288)
...-+.+++. +.+... ...+...++++.|+ +.-..-..+...|.++|++|+++.|+-||++.. ..++.|++ ..
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---DA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---CC
Confidence 3566677777 666552 12222224444444 333445678889999999998899999999876 67888988 57
Q ss_pred CCeEEEEeCCc-eeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 169 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 169 lPai~I~d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
+|+++++.+++ .-.+.+..+....+++.+.++.|+..+
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999998543 222222122223479999999998764
No 45
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0038 Score=58.76 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=80.2
Q ss_pred CCCeeecCccchhh-hccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCC
Q 023016 93 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 169 (288)
Q Consensus 93 lPLV~e~n~et~~~-l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~l 169 (288)
.|.+.++|..|+.. +.-.++..|+++.|.. -.....++...+.+++..|+| +.++.||.+..+.++..||+ ..+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence 34488888888776 3344455566666653 445678999999999999999 99999999999999999999 579
Q ss_pred CeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHHhcC
Q 023016 170 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 209 (288)
Q Consensus 170 Pai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~G 209 (288)
|+++...+++- .++ +..-...++|++|++.+.--
T Consensus 99 PtV~af~dGqp--Vdg----F~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQP--VDG----FQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcC--ccc----cCCCCcHHHHHHHHHHhcCh
Confidence 99987764431 110 11124567999999998754
No 46
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.11 E-value=0.0011 Score=52.24 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=45.3
Q ss_pred hhHHhhhcce-eeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccc-cCCCCHHHHHHHHHHcC
Q 023016 28 SPFLIQMRKF-LTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQNF 92 (288)
Q Consensus 28 ~~~~~~~~k~-~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f-~g~f~~~~L~~FI~~ns 92 (288)
..|....... -...++..+++++...+++. .|+|++|++++++...| +|+++.+.|++||..+.
T Consensus 36 ~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 36 KAFEEAAEEFHPYIKFFATFDSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred HHHHHHHHhhhcCCEEEEECcHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 3344443333 33344555556666667665 58999999988888889 88899999999999874
No 47
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.05 E-value=0.008 Score=56.90 Aligned_cols=147 Identities=14% Similarity=0.182 Sum_probs=92.8
Q ss_pred Eeeecccc-HHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCccchhhhccccCCcEEEE
Q 023016 40 LLKMLDFS-EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI 118 (288)
Q Consensus 40 v~~~~~~s-eel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~et~~~l~~~~~~~~l~~ 118 (288)
||.-...+ ..+..++++.++|+|.+||. +....|.|+.++++|-.|....+-|++.+++.+.........+.-|..+
T Consensus 81 VGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV 158 (468)
T KOG4277|consen 81 VGKLDATRFPAIANEFGIQGYPTIKFFKG--DHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV 158 (468)
T ss_pred ecccccccchhhHhhhccCCCceEEEecC--CeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE
Confidence 44433433 67889999999999999995 3456788999999999999999999999998765443223444445444
Q ss_pred EEccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHH
Q 023016 119 VEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGS 197 (288)
Q Consensus 119 lf~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e 197 (288)
++...+ .-+...+.++|...-. ..|.....+ -+-++-.+ ...|++++..++ .|.... +-+.+
T Consensus 159 f~Gtge---~PL~d~fidAASe~~~~a~FfSasee---VaPe~~~~---kempaV~VFKDe-tf~i~d-------e~dd~ 221 (468)
T KOG4277|consen 159 FFGTGE---GPLFDAFIDAASEKFSVARFFSASEE---VAPEENDA---KEMPAVAVFKDE-TFEIED-------EGDDE 221 (468)
T ss_pred EEeCCC---CcHHHHHHHHhhhheeeeeeeccccc---cCCcccch---hhccceEEEccc-eeEEEe-------cCchh
Confidence 443222 2566778888775422 222222111 11123223 457999988643 343221 34567
Q ss_pred HHHHHHHH
Q 023016 198 QISRFLEG 205 (288)
Q Consensus 198 ~I~~Fl~~ 205 (288)
++.+|++.
T Consensus 222 dLseWinR 229 (468)
T KOG4277|consen 222 DLSEWINR 229 (468)
T ss_pred HHHHHHhH
Confidence 78888764
No 48
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.01 E-value=0.0071 Score=47.56 Aligned_cols=82 Identities=9% Similarity=0.037 Sum_probs=61.5
Q ss_pred CCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCCcEEEEEeCc-CchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCC
Q 023016 112 RKIVLAIVEDE-TEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 189 (288)
Q Consensus 112 ~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~-~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~ 189 (288)
++.++++.|+. --..-..+...+.++|+.++++.|+.+|.+ ++....+.|++ ..+|++.+++++....+.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g~~~~~~G---- 89 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNSTPRVRYNG---- 89 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCCceeEecC----
Confidence 34445555543 334567888999999999988889999998 78888899999 5799999998444444443
Q ss_pred CCCCCCHHHHHHHH
Q 023016 190 IDEEDQGSQISRFL 203 (288)
Q Consensus 190 ~~~e~t~e~I~~Fl 203 (288)
..+.++|.+|+
T Consensus 90 ---~~~~~~l~~f~ 100 (100)
T cd02999 90 ---TRTLDSLAAFY 100 (100)
T ss_pred ---CCCHHHHHhhC
Confidence 47889999885
No 49
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.98 E-value=0.0072 Score=46.41 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=64.6
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcC--C-cEEEEEeCcC--chhHHhhcCCCCCCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKL 169 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~r--g-l~Fv~VD~~~--~~~~le~fGL~k~~~l 169 (288)
+.+++..++..+ ...+.++++.|.. .-..-..+...+.++++.++ + +.|+.+|.+. +..+...+|+ ...
T Consensus 2 ~~~l~~~~~~~~--~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~ 76 (104)
T cd02997 2 VVHLTDEDFRKF--LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGF 76 (104)
T ss_pred eEEechHhHHHH--HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---ccc
Confidence 456666666652 2222244444443 33456677888888888887 5 8899999887 7788888998 478
Q ss_pred CeEEEEeCCc-eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 170 PKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 170 Pai~I~d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
|.++++.+++ .+.+.+ ..+.+++.+|+
T Consensus 77 Pt~~~~~~g~~~~~~~g-------~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEG-------ERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCC-------CCCHHHHHhhC
Confidence 9999888443 444433 46788888774
No 50
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.93 E-value=0.0089 Score=47.34 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=67.4
Q ss_pred eeecCccchhhhcc-ccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcC-chhHH-hhcCCCCCCCC
Q 023016 96 SVPINQDTLNLLKD-DKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFA-DTFEANKKSKL 169 (288)
Q Consensus 96 V~e~n~et~~~l~~-~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~-~~~~l-e~fGL~k~~~l 169 (288)
|.+++.+++..+.. ..++.++++.|+. .-..-..+...+.++|+.+++ +.|+.+|.+. ...+. +.+++ ...
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~~ 79 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KSF 79 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---CcC
Confidence 67888888776422 2344555555543 334457788889999999987 9999999886 34444 46888 579
Q ss_pred CeEEEEeCC--ceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 170 PKMVVWDGN--ENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 170 Pai~I~d~~--~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
|++.+++.+ ..+.+++ +.-+.++|.+|+
T Consensus 80 Pti~~f~~~~~~~~~y~g------~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPS------EQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccC------CCCCHHHHHhhC
Confidence 999988832 3444443 135888898885
No 51
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.87 E-value=0.022 Score=47.83 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=74.1
Q ss_pred cCCCCeeecCccchhhhccccCCcEEEEEEcc---ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCC
Q 023016 91 NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE---TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK 165 (288)
Q Consensus 91 nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~---~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k 165 (288)
...|.+.+ .+.... ....+..++ ++.. ...+..+..-.+.++|++|++ +.|+-||.+++...+..||+
T Consensus 17 ~g~~~~~~---~~~~~~-~~~~~~~vl-~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV-- 89 (132)
T PRK11509 17 RGWTPVSE---SRLDDW-LTQAPDGVV-LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV-- 89 (132)
T ss_pred cCCCcccc---ccHHHH-HhCCCcEEE-EeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC--
Confidence 46777765 444441 122233333 3322 224567888899999999984 99999999999999999999
Q ss_pred CCCCCeEEEEeCCce-eeccCCCCCCCCCCCHHHHHHHHHHHhcCcc
Q 023016 166 KSKLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYREGRT 211 (288)
Q Consensus 166 ~~~lPai~I~d~~~K-Y~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gkl 211 (288)
..+|+++++.+++. -...+ ..+.+++.+|++.+++--.
T Consensus 90 -~siPTLl~FkdGk~v~~i~G-------~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 90 -FRFPATLVFTGGNYRGVLNG-------IHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred -ccCCEEEEEECCEEEEEEeC-------cCCHHHHHHHHHHHhcCcC
Confidence 57999999986532 22222 4688999999999887543
No 52
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.87 E-value=0.015 Score=47.14 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=61.2
Q ss_pred CcEEEEEEccChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCchhHH----hhcCCCCCCCCCeEEEEe-CC--ce-e
Q 023016 113 KIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKKSKLPKMVVWD-GN--EN-Y 181 (288)
Q Consensus 113 ~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~~~l----e~fGL~k~~~lPai~I~d-~~--~K-Y 181 (288)
+.+++-+....+.+=-++.+.++++|+.+++ +.|+|+|-+.|+-.. +.||+ .- .-|.|.+.| .+ .- |
T Consensus 21 g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~I-Dl-~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 21 GIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGI-DL-FRPQIGVVNVTDADSVWM 98 (120)
T ss_pred CceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCc-cc-CCCceeeEecccccceeE
Confidence 4444433333333445899999999999987 999999999997544 45677 33 359999999 32 23 4
Q ss_pred eccCCCCCCC-CCCCHHHHHHHHHHHh
Q 023016 182 LTVIGSESID-EEDQGSQISRFLEGYR 207 (288)
Q Consensus 182 ~~~~~~~~~~-~e~t~e~I~~Fl~~fl 207 (288)
.+.+ . +.-+++.++.|+++++
T Consensus 99 ~m~~-----~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDD-----DEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eccc-----ccccCcHHHHHHHHHhhC
Confidence 4543 2 2368999999999864
No 53
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.01 Score=50.76 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCcee-eccCCCCCCCCCCCHHHHHHHHH
Q 023016 127 SQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY-~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
=+.+...+.+++..|.| +.|..+|++++.+.++.|++ .-+|++++..++++= .+.+ -.+.+.+.+|++
T Consensus 76 Ck~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avPtvlvfknGe~~d~~vG-------~~~~~~l~~~i~ 145 (150)
T KOG0910|consen 76 CKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVPTVLVFKNGEKVDRFVG-------AVPKEQLRSLIK 145 (150)
T ss_pred HhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeeeEEEEEECCEEeeeecc-------cCCHHHHHHHHH
Confidence 35788899999999999 99999999999999999999 579999999866543 2322 478999999999
Q ss_pred HHhc
Q 023016 205 GYRE 208 (288)
Q Consensus 205 ~fl~ 208 (288)
+|+.
T Consensus 146 k~l~ 149 (150)
T KOG0910|consen 146 KFLK 149 (150)
T ss_pred HHhc
Confidence 9874
No 54
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.78 E-value=0.016 Score=46.27 Aligned_cols=83 Identities=10% Similarity=-0.029 Sum_probs=60.7
Q ss_pred cEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCC
Q 023016 114 IVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI 190 (288)
Q Consensus 114 ~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~ 190 (288)
.+.++.|+. .-..-..+...+.++++++++ +.|+.+|.+..+..++.+|+ ...|+++++++++......
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~i~~~g~~~~~~~----- 96 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIVGIINGQVTFYHD----- 96 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEEEEECCEEEEEec-----
Confidence 444444543 234456778889999999986 89999999988888899999 5789999998544322212
Q ss_pred CCCCCHHHHHHHHHH
Q 023016 191 DEEDQGSQISRFLEG 205 (288)
Q Consensus 191 ~~e~t~e~I~~Fl~~ 205 (288)
...+.+.|.+|+++
T Consensus 97 -G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 -SSFTKQHVVDFVRK 110 (111)
T ss_pred -CCCCHHHHHHHHhc
Confidence 25788999999875
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.77 E-value=0.029 Score=47.04 Aligned_cols=95 Identities=8% Similarity=0.087 Sum_probs=67.5
Q ss_pred CCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCc--CchhHHhhcCCCCCCCCCeEEEEe-CCc-eeeccC
Q 023016 112 RKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWD-GNE-NYLTVI 185 (288)
Q Consensus 112 ~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~--~~~~~le~fGL~k~~~lPai~I~d-~~~-KY~~~~ 185 (288)
.+.++++.|.. .-..-..+...+.++++.+++ +.|+.+|.+ .+...++.|++ ..+|++++++ +++ .....+
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCCCEEEEEeC
Confidence 34455555543 234456788899999999988 888887766 34567889999 5799999997 443 333333
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCccccccc
Q 023016 186 GSESIDEEDQGSQISRFLEGYREGRTEQKKV 216 (288)
Q Consensus 186 ~~~~~~~e~t~e~I~~Fl~~fl~Gklkp~iK 216 (288)
..+.+.|.++++.+++|.-.|...
T Consensus 96 -------~~~~~~l~~~l~~l~~~~~~~~~~ 119 (142)
T cd02950 96 -------LQPKQVLAQNLDALVAGEPLPYAN 119 (142)
T ss_pred -------CCCHHHHHHHHHHHHcCCCCCccc
Confidence 467899999999999988555443
No 56
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.74 E-value=0.0061 Score=49.97 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=38.6
Q ss_pred cHHHHhHcCCC--CCCeEEEEccCC-CCcccccCC-CCHHHHHHHHHHc
Q 023016 47 SEDTMVLYDFD--KVPALVALQPSY-NEHNIFYGP-FDEEFLEEFIKQN 91 (288)
Q Consensus 47 seel~~~y~~~--~~PsIvlfk~~d-ee~~~f~g~-f~~~~L~~FI~~n 91 (288)
..+|+++|+++ ++|+|.+|++.+ .+...|.|+ .+.+.|.+||..+
T Consensus 67 ~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 67 NMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred hHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 47899999999 899999999753 244689996 9999999999986
No 57
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.72 E-value=0.0039 Score=47.52 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=54.2
Q ss_pred HhhcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
+.+.|.+..+..... ++..+-+-.+-..+++.+|++++.|++++|++.. ....|.|..+.+.|.+||+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 33 KAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE-EEEEEESSSSHHHHHHHHHHH
T ss_pred ccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc-EEEEEECCCCHHHHHHHHHcC
Confidence 345566666666666 6666666667778999999999999999999643 233688999999999999874
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.64 E-value=0.026 Score=43.57 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred CcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCCC
Q 023016 113 KIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSES 189 (288)
Q Consensus 113 ~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~~ 189 (288)
+.+++++|. ..-..-......++++++.+++ +.|..+|.++.++..+.+|+ ..+|+++++++++ ...+.+
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~~g---- 85 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEISG---- 85 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEEeC----
Confidence 344444444 3333456777889999999988 99999999988888899999 5789999998443 333333
Q ss_pred CCCCCCHHHHHHHHH
Q 023016 190 IDEEDQGSQISRFLE 204 (288)
Q Consensus 190 ~~~e~t~e~I~~Fl~ 204 (288)
..+.+++.+|++
T Consensus 86 ---~~~~~~~~~~l~ 97 (97)
T cd02949 86 ---VKMKSEYREFIE 97 (97)
T ss_pred ---CccHHHHHHhhC
Confidence 356788888763
No 59
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.59 E-value=0.062 Score=54.69 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=110.8
Q ss_pred hh-HHHHHHhhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCC-CcccccCCCCHHHHHHHHHH-
Q 023016 14 NC-LSVILRNLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQ- 90 (288)
Q Consensus 14 ~~-~~~~~~~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~de-e~~~f~g~f~~~~L~~FI~~- 90 (288)
.| .|.-++.+|-.++. ...|+-..-.-...++++..+|+++..|++++++...+ ....|.|-=...++..||..
T Consensus 377 ~~~~~~e~~~~l~e~~~---~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 377 SNEKSAELQSFLGEFAS---LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILAL 453 (555)
T ss_pred CchhhHHHHHHHHHHHh---cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHH
Confidence 46 66777777765553 33454433233344578889999999999999963322 33668773234445555554
Q ss_pred --cCCCCeeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCC
Q 023016 91 --NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 168 (288)
Q Consensus 91 --nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~ 168 (288)
.+-| =..+++++...+...+.+..+-++...+=..=.+..+.++++|..++++..-++|...++..++.+|+ ..
T Consensus 454 ~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v---~~ 529 (555)
T TIGR03143 454 YNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI---MS 529 (555)
T ss_pred HHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc---ee
Confidence 2222 23567777777555555554444332222233477788899999998899999999999999988898 57
Q ss_pred CCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 169 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 169 lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
.|+++|- +++. ..+ ..+.++|.+++
T Consensus 530 vP~~~i~--~~~~-~~G-------~~~~~~~~~~~ 554 (555)
T TIGR03143 530 VPAIVVD--DQQV-YFG-------KKTIEEMLELI 554 (555)
T ss_pred cCEEEEC--CEEE-Eee-------CCCHHHHHHhh
Confidence 8999873 2222 223 35788887765
No 60
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.59 E-value=0.041 Score=48.71 Aligned_cols=109 Identities=10% Similarity=0.083 Sum_probs=73.2
Q ss_pred cCCCCeeecCccchhh-hccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCC
Q 023016 91 NFLPLSVPINQDTLNL-LKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 168 (288)
Q Consensus 91 nslPLV~e~n~et~~~-l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~ 168 (288)
..+.-|.+++.+++.. +...+...++++.|+ ..-..-..+...|+++|++|+++.|+-+|++. .++.|++ ..
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i---~~ 152 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD---KN 152 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---CC
Confidence 4567788888777664 322333334444444 33345678889999999999889999999874 4677887 57
Q ss_pred CCeEEEEeCCcee-eccCCCCCC-CCCCCHHHHHHHHHHH
Q 023016 169 LPKMVVWDGNENY-LTVIGSESI-DEEDQGSQISRFLEGY 206 (288)
Q Consensus 169 lPai~I~d~~~KY-~~~~~~~~~-~~e~t~e~I~~Fl~~f 206 (288)
+|+++++.++..- .+. |...+ ...++.++|+.++..+
T Consensus 153 lPTlliyk~G~~v~~iv-G~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 153 LPTILVYRNGDIVKQFI-GLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred CCEEEEEECCEEEEEEe-CchhhCCCCCCHHHHHHHHHhc
Confidence 9999999955321 121 11122 2378999999998753
No 61
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.58 E-value=0.0044 Score=48.72 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=51.8
Q ss_pred HhhcccchhHHhhhcceeeEeeecc-ccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~-~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
|.+.|.+..+....+++..+.+-.+ -..+++..|++.+.|++++|++. ....|.|..+.+.|.+||
T Consensus 34 ~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 34 ASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred HhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHHHhhC
Confidence 5667777777666666666666555 45789999999999999999964 556789999999999996
No 62
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.51 E-value=0.037 Score=43.33 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=58.4
Q ss_pred CcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCC
Q 023016 113 KIVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSE 188 (288)
Q Consensus 113 ~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~ 188 (288)
+.++++.|+. --..-......++++++.+++ +.|+.+|.+ ....++.|++ ...|+++++.+++ .....+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~~g~~~~~~~G--- 89 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYKNGELVAVIRG--- 89 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEECCEEEEEEec---
Confidence 3444444543 334556778889999999986 889999998 6677899999 5789999998554 333332
Q ss_pred CCCCCCCHHHHHHHHHH
Q 023016 189 SIDEEDQGSQISRFLEG 205 (288)
Q Consensus 189 ~~~~e~t~e~I~~Fl~~ 205 (288)
.+.+.+.++++.
T Consensus 90 -----~~~~~~~~~i~~ 101 (102)
T cd02948 90 -----ANAPLLNKTITE 101 (102)
T ss_pred -----CChHHHHHHHhh
Confidence 578888888764
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.50 E-value=0.033 Score=42.39 Aligned_cols=79 Identities=10% Similarity=0.180 Sum_probs=56.1
Q ss_pred cEEEEEEc-cChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCce-eeccCCCCCC
Q 023016 114 IVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN-YLTVIGSESI 190 (288)
Q Consensus 114 ~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~K-Y~~~~~~~~~ 190 (288)
.++++.|. +.-..-..+...++++++.+.+ +.|+.+|.+........|++ ..+|++++++++.. ....+
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~g~~~~~~~g----- 86 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRNGTIVDRVSG----- 86 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEECCEEEEEEeC-----
Confidence 34444444 3334456788899999999655 99999999988888899999 56999999985432 22222
Q ss_pred CCCCCHHHHHHHH
Q 023016 191 DEEDQGSQISRFL 203 (288)
Q Consensus 191 ~~e~t~e~I~~Fl 203 (288)
.+.++|.+.+
T Consensus 87 ---~~~~~l~~~~ 96 (97)
T cd02984 87 ---ADPKELAKKV 96 (97)
T ss_pred ---CCHHHHHHhh
Confidence 5677777654
No 64
>PTZ00051 thioredoxin; Provisional
Probab=96.46 E-value=0.032 Score=42.60 Aligned_cols=62 Identities=11% Similarity=0.240 Sum_probs=48.3
Q ss_pred cEEEEEEc-cChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 114 IVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 114 ~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
.++++.|+ +.-..-..+...++++|+.+.++.|+.+|.+.+...++.|++ ..+|+++++.++
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g 81 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNG 81 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCC
Confidence 34444444 333456678888999999988899999999988888999999 578999988844
No 65
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.42 E-value=0.045 Score=43.98 Aligned_cols=88 Identities=9% Similarity=0.136 Sum_probs=62.8
Q ss_pred cCCcEEEEEEccCh-hhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc---eeeccCC
Q 023016 111 KRKIVLAIVEDETE-EKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE---NYLTVIG 186 (288)
Q Consensus 111 ~~~~~l~~lf~~~~-e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~---KY~~~~~ 186 (288)
..+..+++++..+. ..-..++..++++|..+..+.|..+|.++++..++.+|+ ..+|++++++++. +..+.+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~~G- 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRYYG- 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEEEe-
Confidence 34444555554322 345788899999999884499999999998888999999 5789999997322 112222
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc
Q 023016 187 SESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 187 ~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
....+++.+|++++.+
T Consensus 96 ------~~~~~el~~~i~~i~~ 111 (113)
T cd02975 96 ------LPAGYEFASLIEDIVR 111 (113)
T ss_pred ------cCchHHHHHHHHHHHh
Confidence 3567899999998764
No 66
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.29 E-value=0.061 Score=39.12 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=55.7
Q ss_pred EEEEEEcc-ChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCCCCCC
Q 023016 115 VLAIVEDE-TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESIDE 192 (288)
Q Consensus 115 ~l~~lf~~-~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~~~~~ 192 (288)
++++++.. .-..-......++++++.++++.|+.+|.+....+.+.||+ ...|++++++.++ .+.+.+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~~~g------- 81 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDRVVG------- 81 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEEEec-------
Confidence 33444433 23345678888899888855599999999988888899999 5789999998443 333333
Q ss_pred CCCHHHHHHHH
Q 023016 193 EDQGSQISRFL 203 (288)
Q Consensus 193 e~t~e~I~~Fl 203 (288)
..+.+.|.+|+
T Consensus 82 ~~~~~~l~~~i 92 (93)
T cd02947 82 ADPKEELEEFL 92 (93)
T ss_pred CCCHHHHHHHh
Confidence 35678888876
No 67
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.22 E-value=0.039 Score=47.20 Aligned_cols=84 Identities=13% Similarity=0.247 Sum_probs=58.1
Q ss_pred CeeecCccchhhhccccCCcEEEEEEc-cChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCC----C
Q 023016 95 LSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK----S 167 (288)
Q Consensus 95 LV~e~n~et~~~l~~~~~~~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~----~ 167 (288)
-+.+++++++......+.+.+.++.|+ +.-..-..+...+.++|+++.+ +.|+.||.++++...+.|++ .. .
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v~ 107 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLSK 107 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCcC
Confidence 355666666555211222333333344 3344567888999999999875 99999999999999999998 43 3
Q ss_pred CCCeEEEEeCCc
Q 023016 168 KLPKMVVWDGNE 179 (288)
Q Consensus 168 ~lPai~I~d~~~ 179 (288)
++|+++++.+++
T Consensus 108 ~~PT~ilf~~Gk 119 (152)
T cd02962 108 QLPTIILFQGGK 119 (152)
T ss_pred CCCEEEEEECCE
Confidence 589999998543
No 68
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.21 E-value=0.024 Score=43.15 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=51.0
Q ss_pred HhhcccchhHHhhhcc---eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMRK---FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k---~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
|.+.|.+..+-...+. +....+--+-..+++..|++...|++++|++... ...|.|..+.+.|..||...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 29 KNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 4445555555444443 4444445556688999999999999999997543 56789999999999999875
No 69
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.13 E-value=0.052 Score=44.37 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 125 EKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 125 e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
..-..+...+.++|.++++ +.|+.||.++++..++.+|+ ..+|+++++.++
T Consensus 27 gpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G 78 (114)
T cd02954 27 PVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRN 78 (114)
T ss_pred hhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECC
Confidence 3456888999999999999 89999999999999999999 579999999854
No 70
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.08 E-value=0.0097 Score=47.70 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=36.0
Q ss_pred eeccccHHHHhHcCCCCCCeEEEE------ccCCCCcccccCC-CCHHH-HHHHHHHc
Q 023016 42 KMLDFSEDTMVLYDFDKVPALVAL------QPSYNEHNIFYGP-FDEEF-LEEFIKQN 91 (288)
Q Consensus 42 ~~~~~seel~~~y~~~~~PsIvlf------k~~dee~~~f~g~-f~~~~-L~~FI~~n 91 (288)
++...++++..++++. .|.++|| +++++...+|.|+ .+.++ |++||+.|
T Consensus 51 F~~t~~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 51 FHHTFDSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred EEEEChHHHHHhcCCC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 3344445555666665 4789999 5799999999987 67656 99999875
No 71
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.05 E-value=0.025 Score=43.35 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=49.0
Q ss_pred HhhcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
|.+.|.+..+....+. +....+-.+...+++..|++.+.|++++|++.......|.|+.+.+.|.+|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 34 KNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 4455655555544443 3333344556678999999999999999986534456789999999999997
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.93 E-value=0.12 Score=37.87 Aligned_cols=69 Identities=9% Similarity=0.156 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 125 EKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 125 e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
..-......+.++|+.+++ +.+..+|.++.....+.+|+ ...|++++ ++..+ +.+ ..+.+++.+++
T Consensus 12 ~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~-~g~~~--~~G-------~~~~~~l~~~l 78 (82)
T TIGR00411 12 PYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI-NGDVE--FIG-------APTKEELVEAI 78 (82)
T ss_pred cchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE-CCEEE--Eec-------CCCHHHHHHHH
Confidence 3456788899999999987 99999999888888888998 46899987 43222 223 35788898888
Q ss_pred HHH
Q 023016 204 EGY 206 (288)
Q Consensus 204 ~~f 206 (288)
+..
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 764
No 73
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.86 E-value=0.028 Score=46.61 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=35.9
Q ss_pred cHHHHhHcCCCC--CCeEEEEccCCCCcccc--cCCCCHHHHHHHHHHcC
Q 023016 47 SEDTMVLYDFDK--VPALVALQPSYNEHNIF--YGPFDEEFLEEFIKQNF 92 (288)
Q Consensus 47 seel~~~y~~~~--~PsIvlfk~~dee~~~f--~g~f~~~~L~~FI~~ns 92 (288)
..+|.+.|++++ +|.+.||+..-++.+.| +|+++.++|.+|++.|+
T Consensus 70 N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 70 NMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 388999999964 69999999655667777 89999999999999994
No 74
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.84 E-value=0.028 Score=44.08 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=47.1
Q ss_pred HhhcccchhHHhhhc-------ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR-------KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-------k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
+.+.|.+..+....+ ++....+--+-..+++.+|++.+.|++++|++.......|.|+.+.++|.+||
T Consensus 34 ~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 34 QMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 445555555443321 23333444555689999999999999999986432345688998999999986
No 75
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.68 E-value=0.13 Score=42.26 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=59.1
Q ss_pred eeecCccchhhhccccC-CcEEEEEEc--cChhhHHHHHHHHHHHHHhcC---C-cEEEEEeCcC-----chhHHhhcCC
Q 023016 96 SVPINQDTLNLLKDDKR-KIVLAIVED--ETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQ-----FADFADTFEA 163 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~-~~~l~~lf~--~~~e~~e~~~~~l~~vAk~~r---g-l~Fv~VD~~~-----~~~~le~fGL 163 (288)
++.+|.+|+.. ..+. +..++-++. .--. + ...++++|.++. + +.++-||.++ +..+.+.||+
T Consensus 3 ~v~L~~~nF~~--~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDLDTVTFYK--VIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeECChhhHHH--HHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCC
Confidence 56788888887 3333 334444444 2112 1 133444444432 2 8899999953 4557899999
Q ss_pred CCCCCCCeEEEEeCCc--e-eeccCCCCCCCCCCCHHHHHHHHHH
Q 023016 164 NKKSKLPKMVVWDGNE--N-YLTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 164 ~k~~~lPai~I~d~~~--K-Y~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
+....|++.+..++. . -.+.+ .+-+.++|.+|++.
T Consensus 77 -~~~gyPTl~lF~~g~~~~~~~Y~G------~~r~~~~lv~~v~~ 114 (116)
T cd03007 77 -DKESYPVIYLFHGGDFENPVPYSG------ADVTVDALQRFLKG 114 (116)
T ss_pred -CcCCCCEEEEEeCCCcCCCccCCC------CcccHHHHHHHHHh
Confidence 545899999888331 1 12222 12799999999875
No 76
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.66 E-value=0.049 Score=42.32 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=48.5
Q ss_pred HhhcccchhHHhhhcc-eeeEeeeccc--cHHHHhHcCCCCCCeEEEEccCC----CCcccccCCCCHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK-FLTLLKMLDF--SEDTMVLYDFDKVPALVALQPSY----NEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k-~~~v~~~~~~--seel~~~y~~~~~PsIvlfk~~d----ee~~~f~g~f~~~~L~~FI~ 89 (288)
+.+.|.+..+....+. +..+.+--+. ..+++..|++.+.|++++|++.. .....|.|+.+.+.|.+||.
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 34 KNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred HhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 4556666665544443 3333344444 57899999999999999999754 13456889999999999984
No 77
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.66 E-value=0.24 Score=38.73 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=55.1
Q ss_pred cEEEEEEc-cChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCch---hHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCC
Q 023016 114 IVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSE 188 (288)
Q Consensus 114 ~~l~~lf~-~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~---~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~ 188 (288)
.++++.|. ..-..-..+...+.++|+.+.++.|+.+|.++.+ .+++.+++ ..+|+++++.+++ ...+.+
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~~~G~~v~~~~G--- 89 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFYKDGEKIHEEEG--- 89 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEEeCCeEEEEEeC---
Confidence 34444443 3233456788899999999955999999988664 67888999 5789999887443 333333
Q ss_pred CCCCCCCHHHHHHHHHH
Q 023016 189 SIDEEDQGSQISRFLEG 205 (288)
Q Consensus 189 ~~~~e~t~e~I~~Fl~~ 205 (288)
..++++.+-+..
T Consensus 90 -----~~~~~l~~~~~~ 101 (103)
T cd02985 90 -----IGPDELIGDVLY 101 (103)
T ss_pred -----CCHHHHHHHHHh
Confidence 466777766544
No 78
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.64 E-value=0.031 Score=43.34 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.8
Q ss_pred HhhcccchhHHhhhcceeeEe-eeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCC-HHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLL-KMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFD-EEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~-~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~-~~~L~~FI 88 (288)
+.+.|.+.......+..+.++ +--+-..+++..|++.+.|++++|++..+....|.|..+ .++|.+||
T Consensus 35 ~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 35 QALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 445666666555544434443 334445789999999999999999965345566888876 89999986
No 79
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.62 E-value=0.041 Score=42.04 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=48.8
Q ss_pred HhhcccchhHHhhhc---ceeeEeeeccc-cHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR---KFLTLLKMLDF-SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~---k~~~v~~~~~~-seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
|.+.|.+..+....+ ++..+.+--+- ..+++..|++.+.|++++|++.......|.|..+.+.|.+||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 455666555555543 34444444444 578999999999999999987544556788999999999986
No 80
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.57 E-value=0.26 Score=40.89 Aligned_cols=101 Identities=19% Similarity=0.318 Sum_probs=58.4
Q ss_pred eeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHH-Hh---cCCcEEEEEeCcCch-----hHHhhcCCCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA-SA---NRELVFCYVGIKQFA-----DFADTFEANKK 166 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vA-k~---~rgl~Fv~VD~~~~~-----~~le~fGL~k~ 166 (288)
++.++.-|+.+ ...+-...++=|+..- .+.+-...|.++| +. -.+++++.|..++|+ +..+.||+ ++
T Consensus 6 ~v~LD~~tFdK--vi~kf~~~LVKFD~ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i-~k 81 (126)
T PF07912_consen 6 CVPLDELTFDK--VIPKFKYVLVKFDVAY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI-DK 81 (126)
T ss_dssp SEEESTTHHHH--HGGGSSEEEEEEEESS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT--SC
T ss_pred eeeccceehhh--eeccCceEEEEEeccC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC-Cc
Confidence 55677777777 3333333333243211 1223445566666 32 333999999888664 56899999 77
Q ss_pred CCCCeEEEEe-CCceee-ccCCCCCCCCCCCHHHHHHHHHH
Q 023016 167 SKLPKMVVWD-GNENYL-TVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 167 ~~lPai~I~d-~~~KY~-~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
.+.|.+.+.. +...+. ++. ..+++.++|++|+++
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~-----~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPF-----DGDVTADNLQRFVKS 117 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-T-----CS-S-HHHHHHHHHH
T ss_pred ccCCEEEEecCCCCCCccCCc-----cCCccHHHHHHHHHh
Confidence 8899999888 333331 222 347999999999986
No 81
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.49 E-value=0.035 Score=45.64 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=44.4
Q ss_pred cceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHH
Q 023016 35 RKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 35 ~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ 90 (288)
.++..+-+-.+-..+++++|++.+.||+++||+ ++...|.|..+.+.|.+||++
T Consensus 64 ~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~--G~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 64 KGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKD--DEVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred CCCEEEEEeCCCCHHHHHHcCCccccEEEEEEC--CEEEEeeCCCCHHHHHHHHHH
Confidence 455556667777799999999999999999995 344458899999999999985
No 82
>PLN02309 5'-adenylylsulfate reductase
Probab=95.32 E-value=0.18 Score=50.47 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCeeecCccchhhh-ccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCc-CchhHHh-hcCCCCCC
Q 023016 94 PLSVPINQDTLNLL-KDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKKS 167 (288)
Q Consensus 94 PLV~e~n~et~~~l-~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~-~~~~~le-~fGL~k~~ 167 (288)
+.|.+++.+++..+ ...+.+.++++.|+. --..-..+...|.++|+.+++ +.|+.+|.+ ....... .|++ .
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I---~ 421 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL---G 421 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---c
Confidence 46788888887763 233445555555553 334456788899999999977 999999998 5555554 6899 5
Q ss_pred CCCeEEEEe-CCce-eeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 168 KLPKMVVWD-GNEN-YLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 168 ~lPai~I~d-~~~K-Y~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
.+|+++++. ++.+ -.+.+ +.-+.++|.+|++..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~------~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPS------EKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCC------CCcCHHHHHHHHHHh
Confidence 799999998 3321 12222 246899999999864
No 83
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.31 E-value=0.06 Score=41.47 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=47.8
Q ss_pred HhhcccchhHHhhhc--ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ 90 (288)
+.+.|.+..+-...+ ++....+--+-+.+++..|++.+.|++++|++. +...|.|..+.+.|.+||++
T Consensus 32 ~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 32 QQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred HHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 456666666654433 233333334455788999999999999999753 34568899999999999863
No 84
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.23 E-value=0.097 Score=48.78 Aligned_cols=111 Identities=13% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCCCeeecCc-cchhh-hccccCCc-EEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCC
Q 023016 92 FLPLSVPINQ-DTLNL-LKDDKRKI-VLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 168 (288)
Q Consensus 92 slPLV~e~n~-et~~~-l~~~~~~~-~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~ 168 (288)
++.-|.+++. +.+.. +--..... +++.|+.+..+....+-..|..+|++|+.+.|+-+.+..-+ ..+.|.. ..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~~ 198 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---KN 198 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---TC
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---cC
Confidence 4555666653 44433 11111222 33333334445567888999999999999999998876432 4555655 67
Q ss_pred CCeEEEEeCCc-eeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 169 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 169 lPai~I~d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
+|++++|.++. .-.+.+..+.+.++++.++|+.|+..+
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999543 222222223335579999999999863
No 85
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.15 E-value=0.069 Score=39.81 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=45.3
Q ss_pred cccchhHHhhh---cceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 24 LPLMSPFLIQM---RKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 24 ~~~~~~~~~~~---~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
.|.+..+.... .++....+-.+-..+++.+|++...|++++|++.......|.|..+.+.|.+|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 34 APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 34444443333 344444454555689999999999999999996533455688888888898885
No 86
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.02 E-value=0.31 Score=48.95 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=71.5
Q ss_pred CCeeecCccchhhh-ccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCch-hHH-hhcCCCCCC
Q 023016 94 PLSVPINQDTLNLL-KDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANKKS 167 (288)
Q Consensus 94 PLV~e~n~et~~~l-~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~-~~l-e~fGL~k~~ 167 (288)
+-|.++|.+|+..+ +..+.+.++++.|+. --..-..+...|.++|+++++ +.|+.+|.+... ..+ +.|++ .
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I---~ 427 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL---G 427 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC---C
Confidence 47889999998873 212344444544543 334467788899999999987 899999887543 333 67899 4
Q ss_pred CCCeEEEEeCCc--eeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 168 KLPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 168 ~lPai~I~d~~~--KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
.+|+++++.++. ...|.+ +.-+.++|..|++..
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~------g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPS------EKRDVDSLMSFVNLL 462 (463)
T ss_pred ccceEEEEECCCCCceeCCC------CCCCHHHHHHHHHhh
Confidence 799999998332 112322 247899999999864
No 87
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.97 E-value=0.27 Score=38.07 Aligned_cols=82 Identities=7% Similarity=-0.036 Sum_probs=53.6
Q ss_pred CcEEEEEEcc-ChhhHHHHHHHH---HHHHHhcCC-cEEEEEeCcC----chhHHhhcCCCCCCCCCeEEEEeC--Cc-e
Q 023016 113 KIVLAIVEDE-TEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQ----FADFADTFEANKKSKLPKMVVWDG--NE-N 180 (288)
Q Consensus 113 ~~~l~~lf~~-~~e~~e~~~~~l---~~vAk~~rg-l~Fv~VD~~~----~~~~le~fGL~k~~~lPai~I~d~--~~-K 180 (288)
+.++++.|.. .-..-..+...+ .++++.+++ +.|+.+|.++ ...+++.+|+ ..+|++++++. +. .
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLFYGPGGEPEP 87 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEEECCCCCCCC
Confidence 3444444443 223344555544 567888886 9999999875 4567888998 57999999983 33 2
Q ss_pred eeccCCCCCCCCCCCHHHHHHHHH
Q 023016 181 YLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 181 Y~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
+.+.+ ..+.++|.++++
T Consensus 88 ~~~~G-------~~~~~~l~~~l~ 104 (104)
T cd02953 88 LRLPG-------FLTADEFLEALE 104 (104)
T ss_pred ccccc-------ccCHHHHHHHhC
Confidence 33333 578888888863
No 88
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.93 E-value=0.17 Score=42.71 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC-Cc-eeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 128 QKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NE-NYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 128 e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~-~~-KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
....+.|.++|+.+++ +.|+.+... .+.+.+|+ + . |+++++.. +. ...+.+ ..++.+.|.+|+.
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~~~~---~~~~~~~~-~--~-p~i~~~k~~~~~~~~y~~------~~~~~~~l~~fI~ 72 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVTFNE---ELAKKYGI-K--E-PTIVVYKKFDEKPVVYDG------DKFTPEELKKFIK 72 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEEE-H---HHHHHCTC-S--S-SEEEEEECTTTSEEEESS------STTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCcEEEEEcHH---HHHHHhCC-C--C-CcEEEeccCCCCceeccc------ccCCHHHHHHHHH
Confidence 3677899999999998 999999754 56777888 2 3 99999993 43 344443 1489999999999
Q ss_pred HHhcCcccc
Q 023016 205 GYREGRTEQ 213 (288)
Q Consensus 205 ~fl~Gklkp 213 (288)
.-.-..+.+
T Consensus 73 ~~~~P~v~~ 81 (184)
T PF13848_consen 73 KNSFPLVPE 81 (184)
T ss_dssp HHSSTSCEE
T ss_pred Hhccccccc
Confidence 987766544
No 89
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.92 E-value=0.1 Score=40.32 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=48.9
Q ss_pred HhhcccchhHHhhhcceeeE-eeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTL-LKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v-~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
+.+.|.+..+-...+....+ .+--+-..+++.+|++.+.|++++|++. .....|.|..+.+.|.+|.
T Consensus 34 ~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 34 HDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG-MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred HHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC-CCcccCCCCCCHHHHHhhC
Confidence 45677777766666543333 3445556889999999999999999853 2345688999999999883
No 90
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.85 E-value=0.2 Score=40.18 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=54.1
Q ss_pred eeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcC---C-cEEEEEeCc--CchhHHhhcCCCCCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANR---E-LVFCYVGIK--QFADFADTFEANKKSK 168 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~r---g-l~Fv~VD~~--~~~~~le~fGL~k~~~ 168 (288)
+.+++.+++..... +.+.++++.|+. .-..-..+...++++|+.++ + +.|+.+|.+ ......+.||+ ..
T Consensus 3 v~~l~~~~f~~~i~-~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~~ 78 (114)
T cd02992 3 VIVLDAASFNSALL-GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---TG 78 (114)
T ss_pred eEECCHHhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---CC
Confidence 67788888876312 223444554543 33445677788999999775 4 888888854 35567888999 57
Q ss_pred CCeEEEEeCC
Q 023016 169 LPKMVVWDGN 178 (288)
Q Consensus 169 lPai~I~d~~ 178 (288)
+|++.++..+
T Consensus 79 ~Pt~~lf~~~ 88 (114)
T cd02992 79 YPTLRYFPPF 88 (114)
T ss_pred CCEEEEECCC
Confidence 8999999833
No 91
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=94.74 E-value=0.082 Score=40.36 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=47.8
Q ss_pred HhhcccchhHHhhhcc----eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK----FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k----~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
+.+.|.+..+....+. +..+.+--+-..+++..|++...|++++|++. .....|.|..+.+.|.+||
T Consensus 32 ~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 32 KRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred HHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 5567777666555543 44444444445788999999999999999753 2344688999999999986
No 92
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.73 E-value=0.074 Score=43.09 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=46.7
Q ss_pred HhhcccchhHHhhhcc-eeeEeeeccccHHHH-hHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK-FLTLLKMLDFSEDTM-VLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k-~~~v~~~~~~seel~-~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
+.+.|.+...-...+. +....+--+-+.+++ .+|++.+.|++.+|++. ++...|.|..+.+.|..|+
T Consensus 45 k~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 45 QAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 4566666665544443 333334444456788 58999999999999854 3456799999999999884
No 93
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.70 E-value=0.12 Score=49.07 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=68.9
Q ss_pred eeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCccc-hhhhccccCCcEEEEEE
Q 023016 42 KMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT-LNLLKDDKRKIVLAIVE 120 (288)
Q Consensus 42 ~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~et-~~~l~~~~~~~~l~~lf 120 (288)
|--+-..+++.+|.+.|+||+.+||+..--.-.|-|....++|..||+...--.+-|+..-+ ...+-.-+.+..++|+-
T Consensus 56 VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~ 135 (375)
T KOG0912|consen 56 VDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFP 135 (375)
T ss_pred cccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEec
Confidence 33444578899999999999999997543344688999999999999987544466665422 22211223445566554
Q ss_pred ccChhhHHHHHHHHHHHHHhcCC-cEEEEE
Q 023016 121 DETEEKSQKLVTTLKAAASANRE-LVFCYV 149 (288)
Q Consensus 121 ~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~V 149 (288)
.....++ ..+++||...|+ ..|...
T Consensus 136 ~kdspey----~~~~kva~~lr~dc~f~V~ 161 (375)
T KOG0912|consen 136 SKDSPEY----DNLRKVASLLRDDCVFLVG 161 (375)
T ss_pred cCCCchH----HHHHHHHHHHhhccEEEee
Confidence 3333333 467888888888 555543
No 94
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.68 E-value=0.1 Score=39.69 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=47.9
Q ss_pred hhcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHH
Q 023016 22 NLLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 22 ~~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~ 89 (288)
.+.|.+..+....+ ++..+.+--+-..+++.+|++.+.|++++|+. ......+.|..+.+.|.+||.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 29 ELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA-GQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred HHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeC-CEEeeeecCCCCHHHHHHHhC
Confidence 44555555554443 34456666777789999999999999999983 222335788888999999974
No 95
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.17 E-value=0.14 Score=38.95 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred hhcccchhHHhhhcc--eeeEeeeccccHHHHhHcCCCCCCeEEEEccCC-CCcccccCCCCHHHHHHHH
Q 023016 22 NLLPLMSPFLIQMRK--FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k--~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~d-ee~~~f~g~f~~~~L~~FI 88 (288)
.+.|.+..+....+. -+.++.......+++..+++.+.|++++|++.. .+...|.|..+.+.|.+||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 35 ALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 345555444443333 233333333345788889989999999999654 3455689999999999986
No 96
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.15 E-value=0.44 Score=42.38 Aligned_cols=88 Identities=9% Similarity=0.161 Sum_probs=61.6
Q ss_pred ccCCcEEEEEEccCh---hhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCce-e-e
Q 023016 110 DKRKIVLAIVEDETE---EKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN-Y-L 182 (288)
Q Consensus 110 ~~~~~~l~~lf~~~~---e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~K-Y-~ 182 (288)
+..++.+.++..+.. ..-..+...++++|+.+.+ +.++-+|.++.....+.+|+ ..+|++++++++.. . .
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V---~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV---ERVPTTIILEEGKDGGIR 93 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC---CccCEEEEEeCCeeeEEE
Confidence 445555554433211 2356788999999999966 56777777788888999999 57899999885432 1 2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHh
Q 023016 183 TVIGSESIDEEDQGSQISRFLEGYR 207 (288)
Q Consensus 183 ~~~~~~~~~~e~t~e~I~~Fl~~fl 207 (288)
+.+ ..+.+++.+|++.++
T Consensus 94 ~~G-------~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 94 YTG-------IPAGYEFAALIEDIV 111 (215)
T ss_pred Eee-------cCCHHHHHHHHHHHH
Confidence 333 356788999999885
No 97
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.07 E-value=0.14 Score=40.76 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=46.9
Q ss_pred HhhcccchhHHhhhc--ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ 90 (288)
+.+.|.+..+....+ ++....+-.+-..+++..+++.+.|++++|+.. .....+.|..+.+.|.+||..
T Consensus 40 ~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 40 IHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC-EEEEEecCCCCHHHHHHHHhc
Confidence 455555555554443 344444444556789999999999999999832 222335788889999999974
No 98
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.06 E-value=0.22 Score=37.40 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=50.2
Q ss_pred HhhcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
|.++|.+..+..... ++..+.+-.+-+.+++..|++...|++++|+. ......+.|..+.+.|.+||+.+
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 30 KMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN-GKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC-CcEeeeecCCCCHHHHHHHHHhh
Confidence 455666666654444 46666666667788999999999999999973 22223456777889999999864
No 99
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.04 E-value=0.23 Score=38.64 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=47.1
Q ss_pred HhhcccchhHHhhhc----ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR----KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~----k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ 90 (288)
|.+.|.+..+....+ ++....+-.+...+++..|++.+.|++++|++ +....+.|..+.+.|.+|++.
T Consensus 31 ~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~--~~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 31 KKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKG--DLAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcC--CCceeecCCCCHHHHHHHHHh
Confidence 455566655544432 13333333344578899999999999999974 234568898999999999975
No 100
>PHA02278 thioredoxin-like protein
Probab=93.64 E-value=1.1 Score=35.67 Aligned_cols=79 Identities=8% Similarity=0.070 Sum_probs=52.5
Q ss_pred cEEEEEEccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCc----hhHHhhcCCCCCCCCCeEEEEeCCce-eeccCCC
Q 023016 114 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWDGNEN-YLTVIGS 187 (288)
Q Consensus 114 ~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~----~~~le~fGL~k~~~lPai~I~d~~~K-Y~~~~~~ 187 (288)
..++.+..+-=..-..+...+.++|+++.+ ..|+.+|.+.+ +..++.|++ ..+|+++++.+++. ....+
T Consensus 16 ~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk~G~~v~~~~G-- 90 (103)
T PHA02278 16 DVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYKDGQLVKKYED-- 90 (103)
T ss_pred cEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEECCEEEEEEeC--
Confidence 334444443333456777889999988655 77888888864 567889999 57999999985542 23322
Q ss_pred CCCCCCCCHHHHHHH
Q 023016 188 ESIDEEDQGSQISRF 202 (288)
Q Consensus 188 ~~~~~e~t~e~I~~F 202 (288)
..+.++|.++
T Consensus 91 -----~~~~~~l~~~ 100 (103)
T PHA02278 91 -----QVTPMQLQEL 100 (103)
T ss_pred -----CCCHHHHHhh
Confidence 3567776654
No 101
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=93.46 E-value=0.91 Score=34.46 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC-Ccee-eccCCCCCCCCCCCHHHHHHHHHH
Q 023016 129 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENY-LTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 129 ~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~-~~KY-~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
.....|+++|..+|+ +.|+.+... .+++.+++ ..|.++++.. +... .+++ ..+.+.|.+|+..
T Consensus 31 ~~~~~f~~~A~~~r~~~~F~~~~~~---~~~~~~~~----~~~~i~l~~~~~~~~~~y~g-------~~~~~~l~~fi~~ 96 (97)
T cd02981 31 EEYKTFEKVAESLRDDYGFGHTSDK---EVAKKLKV----KPGSVVLFKPFEEEPVEYDG-------EFTEESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHHHhcccCCeEEEEChH---HHHHHcCC----CCCceEEeCCcccCCccCCC-------CCCHHHHHHHHHh
Confidence 567889999999998 999998754 44555555 2367777762 2211 1222 4678999999864
No 102
>PRK10996 thioredoxin 2; Provisional
Probab=93.36 E-value=0.25 Score=41.08 Aligned_cols=68 Identities=6% Similarity=0.202 Sum_probs=48.6
Q ss_pred hcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 23 LLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 23 ~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
+.|.+..+..... ++..+.+-.+-..+++..|++.+.|++++|++ .+....+.|..+.+.|.+||...
T Consensus 70 ~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~-G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 70 FAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKN-GQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC-CEEEEEEcCCCCHHHHHHHHHHh
Confidence 3444555444433 56666666677789999999999999999983 22233467888999999999864
No 103
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.16 E-value=1.7 Score=36.81 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=43.7
Q ss_pred EccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 120 EDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 120 f~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
...-...-..+...|.++|+++++ ..|+-||.++.+.+++.+++ . +..|.+.++.++
T Consensus 31 ~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I-~-~~~t~~~ffk~g 88 (142)
T PLN00410 31 GHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL-Y-DPCTVMFFFRNK 88 (142)
T ss_pred ECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc-c-CCCcEEEEEECC
Confidence 333334456788899999999999 88899999999999999999 3 334555477643
No 104
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=93.12 E-value=0.3 Score=38.48 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=44.0
Q ss_pred HhhcccchhHHhhhc--ceeeEeeeccc-cHHHHh-HcCCCCCCeEEEEccCCCCcccccCC-CCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLDF-SEDTMV-LYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~~-seel~~-~y~~~~~PsIvlfk~~dee~~~f~g~-f~~~~L~~FI 88 (288)
+.+.|.+..+-...+ ++....+--+- ...++. .|++...|++++|++.......|.|+ .+.++|.+||
T Consensus 37 ~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 37 QAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred HHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 344555555444443 34344344443 345665 48999999999998644445678885 7999999986
No 105
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=92.96 E-value=0.44 Score=36.90 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=39.5
Q ss_pred ceeeEeeeccc----cHHHHhHcCCCCCCeEEEEcc-CCCCcccccCCCCHHHHHHHHH
Q 023016 36 KFLTLLKMLDF----SEDTMVLYDFDKVPALVALQP-SYNEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 36 k~~~v~~~~~~----seel~~~y~~~~~PsIvlfk~-~dee~~~f~g~f~~~~L~~FI~ 89 (288)
++..+.+-.+- ..+++..|++...|++++|++ .......+.|..+.+.|.+||+
T Consensus 46 ~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 46 DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 55555444332 468899999999999999997 3333455678889999998874
No 106
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.53 E-value=0.3 Score=35.34 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=48.3
Q ss_pred HhhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~ 89 (288)
+.+.|.+..+.....++..+.+-.+-..+++..|++.+.|++++|++. .....+.|..+.+.|.+||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 26 KAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred HHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEEEEEecCCCHHHHHHHhC
Confidence 345555555555455666666666667889999999999999999853 23345667777788999873
No 107
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=92.52 E-value=1.4 Score=34.50 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC-Ccee-eccCCCCCCCCCCCHHHHHHHHHH
Q 023016 129 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENY-LTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 129 ~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~-~~KY-~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
...+.|+++|..+|+ +.|...... .....+++ ..|+++++.+ ++.. .+.+ ..++.+.|.+|++.
T Consensus 33 ~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~----~~~~i~l~~~~~e~~~~y~~------g~~~~~~l~~fi~~ 99 (102)
T cd03066 33 EHYKAFEEAAEEFHPYIKFFATFDS---KVAKKLGL----KMNEVDFYEPFMEEPVTIPD------KPYSEEELVDFVEE 99 (102)
T ss_pred HHHHHHHHHHHhhhcCCEEEEECcH---HHHHHcCC----CCCcEEEeCCCCCCCcccCC------CCCCHHHHHHHHHH
Confidence 466789999999999 999887654 34555566 3577888852 2221 1212 14789999999975
Q ss_pred H
Q 023016 206 Y 206 (288)
Q Consensus 206 f 206 (288)
.
T Consensus 100 ~ 100 (102)
T cd03066 100 H 100 (102)
T ss_pred h
Confidence 3
No 108
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=1.4 Score=35.35 Aligned_cols=68 Identities=16% Similarity=0.365 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCcee-eccCCCCCCCCCCCHHHHHHHHHH
Q 023016 127 SQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY-~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
-..+...+.++|.+|.++.|+.+|.++...+++.+++ ...|++.++.++++= .+.+ -+.+.+++.+..
T Consensus 36 Ck~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g~~~~~~vG--------a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 36 CKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGGEEVDEVVG--------ANKAELEKKIAK 104 (106)
T ss_pred hhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECCEEEEEEec--------CCHHHHHHHHHh
Confidence 4578889999999999999999999987788999998 478999999854321 1222 355566666654
No 109
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.14 E-value=0.45 Score=36.23 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHhhcccchhHHhhhc---ceeeEeeeccc--cHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 20 LRNLLPLMSPFLIQMR---KFLTLLKMLDF--SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 20 ~~~~~~~~~~~~~~~~---k~~~v~~~~~~--seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
-|.+.|.+.......+ .+..+.+--+- ..+++..|++.+.|++++|++. +....|.|..+.+.|.+||
T Consensus 32 C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 32 CKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred HHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 3455555555444333 22222222222 5788999999999999999953 2345688988999999885
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.99 E-value=1.3 Score=36.31 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 123 TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 123 ~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
-...-..+-..|.++|+++++ +.|..||.++.+.+.+.+++ ...|+++.+.++
T Consensus 25 WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkng 78 (114)
T cd02986 25 EDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFNG 78 (114)
T ss_pred CChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEECC
Confidence 334456788899999999999 99999999999999999999 356999877643
No 111
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=91.90 E-value=0.54 Score=39.44 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=50.6
Q ss_pred HHHHHHhhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 16 LSVILRNLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
..|||-.|.-.++ ..++..+-+-.+-+.+++..|++.+.|++++||+. +......|-.+.+.+.+||...
T Consensus 54 ~avvleELa~e~~-----~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG-k~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 54 NPVMIGELLREFP-----DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG-NYRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred HHHHHHHHHHHhc-----CCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC-EEEEEEeCcCCHHHHHHHHHHH
Confidence 3456655544332 13466666788888999999999999999999952 1223456777889999999875
No 112
>PRK09381 trxA thioredoxin; Provisional
Probab=91.48 E-value=0.66 Score=36.12 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred HhhcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
+.+.|.+..+....+ ++....+--+-...+..+|++...|++++|+.. .....+.|..+.+.|+.||...
T Consensus 37 ~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 37 KMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred HHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCC-eEEEEecCCCCHHHHHHHHHHh
Confidence 344555554444432 344455555666888899999999999999732 1233467888899999999865
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=91.45 E-value=0.77 Score=35.08 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=42.8
Q ss_pred cccchhHHhhhc-ceeeEeeeccccHHHHhHcCCC--CCCeEEEEccCCCCcccccC-CCCHHHHHHHHHH
Q 023016 24 LPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFD--KVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQ 90 (288)
Q Consensus 24 ~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~--~~PsIvlfk~~dee~~~f~g-~f~~~~L~~FI~~ 90 (288)
.|.+...--..+ ++.-+-+-.+-..+++..|++. +.|++++|+...+....+.+ .++.+.|.+||..
T Consensus 31 ~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~ 101 (103)
T cd02982 31 RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVED 101 (103)
T ss_pred HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHh
Confidence 334444333333 3333333334346799999999 89999999974334444444 4589999999975
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.38 E-value=0.67 Score=37.11 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=44.8
Q ss_pred ccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCC-CcccccCCCCHHHHHHHHHH
Q 023016 25 PLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 25 ~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~de-e~~~f~g~f~~~~L~~FI~~ 90 (288)
|.+..+.....++..+-+-.+...+++..|++...|++++|+.... ....|.|-....++.+||..
T Consensus 42 ~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 42 QLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 3333333333455445455666789999999999999999985321 22357786677889999874
No 115
>PTZ00062 glutaredoxin; Provisional
Probab=91.29 E-value=2.2 Score=38.30 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=54.9
Q ss_pred CcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceee-ccCCCCCCC
Q 023016 113 KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL-TVIGSESID 191 (288)
Q Consensus 113 ~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~-~~~~~~~~~ 191 (288)
+..++++...-.++-..+...+.++|+.|+++.|+.||.+ +++ ...|.++++.+++.-. +.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g~~i~r~~------- 79 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNSQLINSLE------- 79 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECCEEEeeee-------
Confidence 3333333344455678999999999999988999999976 677 5789999988554321 22
Q ss_pred CCCCHHHHHHHHHHHhc
Q 023016 192 EEDQGSQISRFLEGYRE 208 (288)
Q Consensus 192 ~e~t~e~I~~Fl~~fl~ 208 (288)
..++..+.++++.+..
T Consensus 80 -G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 80 -GCNTSTLVSFIRGWAQ 95 (204)
T ss_pred -CCCHHHHHHHHHHHcC
Confidence 2467788888877655
No 116
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=4.6 Score=38.66 Aligned_cols=72 Identities=21% Similarity=0.404 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCC---------cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe---CCceeeccCCCCCC---CCCCCH
Q 023016 132 TTLKAAASANRE---------LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD---GNENYLTVIGSESI---DEEDQG 196 (288)
Q Consensus 132 ~~l~~vAk~~rg---------l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d---~~~KY~~~~~~~~~---~~e~t~ 196 (288)
+.++-+|..+|. +-|..||-++-++..+.|++ ..+|.+.+.. ++.+- ++.. .-...+
T Consensus 84 ~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~-----s~~~d~~~~g~~A 155 (331)
T KOG2603|consen 84 EEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKR-----SDQMDQQDLGFEA 155 (331)
T ss_pred HHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcc---cCCCeEEEeCCCcccccc-----CccchhhhcchhH
Confidence 667777776653 78999999998899999999 4789999996 22221 0111 113569
Q ss_pred HHHHHHHHHHhcCcc
Q 023016 197 SQISRFLEGYREGRT 211 (288)
Q Consensus 197 e~I~~Fl~~fl~Gkl 211 (288)
|+|.+|+++.-+=..
T Consensus 156 e~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 156 EQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHHHHHHhhhhee
Confidence 999999999765443
No 117
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.20 E-value=1.5 Score=35.02 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC---ceeeccCCCCCCCCC-CCHHH-HHHH
Q 023016 129 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN---ENYLTVIGSESIDEE-DQGSQ-ISRF 202 (288)
Q Consensus 129 ~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~---~KY~~~~~~~~~~~e-~t~e~-I~~F 202 (288)
...+.|.++|..+|+ +.|++...+ .+...+++ + .|.++++.+. .||. ++....... .+.++ |.+|
T Consensus 33 ~~~~~F~~vA~~~Rdd~~F~~t~~~---~~~~~~~~-~---~~~vvl~rp~~~~~k~e--~~~~~~~~~~~~~~~~~~~f 103 (107)
T cd03068 33 PAYQLYQDAANSLREDYKFHHTFDS---EIFKSLKV-S---PGQLVVFQPEKFQSKYE--PKSHVLNKKDSTSEDELKDF 103 (107)
T ss_pred HHHHHHHHHHHhcccCCEEEEEChH---HHHHhcCC-C---CCceEEECcHHHhhhcC--cceeeeeccccchHHHHHHH
Confidence 456789999999999 999887655 45566677 2 3567777522 1331 111111112 44544 9999
Q ss_pred HHH
Q 023016 203 LEG 205 (288)
Q Consensus 203 l~~ 205 (288)
++.
T Consensus 104 ~~~ 106 (107)
T cd03068 104 FKE 106 (107)
T ss_pred Hhc
Confidence 874
No 118
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=90.77 E-value=3.7 Score=32.73 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=54.1
Q ss_pred cEEEEEEccCh-hhHHHHHHHHH---HHHHhcCC-cEEEEEeCcCc-------------hhHHhhcCCCCCCCCCeEEEE
Q 023016 114 IVLAIVEDETE-EKSQKLVTTLK---AAASANRE-LVFCYVGIKQF-------------ADFADTFEANKKSKLPKMVVW 175 (288)
Q Consensus 114 ~~l~~lf~~~~-e~~e~~~~~l~---~vAk~~rg-l~Fv~VD~~~~-------------~~~le~fGL~k~~~lPai~I~ 175 (288)
.++++.|..+. ..-..+...+. .+++.+++ +.++.+|.+.. ..+...|++ ..+|++++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v---~~~Pt~~~~ 91 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV---RFTPTVIFL 91 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC---ccccEEEEE
Confidence 34455554322 22334444332 45555555 78888887643 456788888 468999999
Q ss_pred e-C-Cc-eeeccCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 023016 176 D-G-NE-NYLTVIGSESIDEEDQGSQISRFLEGYREGR 210 (288)
Q Consensus 176 d-~-~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gk 210 (288)
+ + ++ .....+ ..+.+++.++++.++++.
T Consensus 92 ~~~gg~~~~~~~G-------~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 92 DPEGGKEIARLPG-------YLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred cCCCCceeEEecC-------CCCHHHHHHHHHHHHhhh
Confidence 9 4 33 233333 467899999999988764
No 119
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=90.66 E-value=0.85 Score=38.08 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=46.0
Q ss_pred HhhcccchhHHhhhc-ceeeEeeecccc--HHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLLKMLDFS--EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~~~~~~s--eel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
+.+.|.+..+..... ++..+.+-.+.. .+++..|++.+.|++++|.+.......+.|..+.+.|.++|...
T Consensus 36 ~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 36 QEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred HHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 456677766655443 333333333332 47889999999999999964322233457877788888888764
No 120
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.40 E-value=2.7 Score=33.06 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC-C--ceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 129 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-N--ENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 129 ~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~-~--~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
...+.|.++|..+|+ +.|++...+ .++..+|+ .|.++++.+ . .||. ++.......++.+.|.+|++
T Consensus 32 ~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~-----~~~ivl~~p~~~~~k~d--e~~~~y~g~~~~~~l~~fi~ 101 (104)
T cd03069 32 KLLSEFLKAADTLRESFRFAHTSDK---QLLEKYGY-----GEGVVLFRPPRLSNKFE--DSSVKFDGDLDSSKIKKFIR 101 (104)
T ss_pred hHHHHHHHHHHhhhhcCEEEEEChH---HHHHhcCC-----CCceEEEechhhhcccC--cccccccCcCCHHHHHHHHH
Confidence 567889999999998 999887665 44555555 256777741 1 1221 11111122578899999997
Q ss_pred H
Q 023016 205 G 205 (288)
Q Consensus 205 ~ 205 (288)
.
T Consensus 102 ~ 102 (104)
T cd03069 102 E 102 (104)
T ss_pred h
Confidence 5
No 121
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=90.35 E-value=0.85 Score=35.49 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=41.7
Q ss_pred HhhcccchhHHhhhc-ceeeEe-eeccccHHHHhHcCCCCCCeEEEEccCCCCcc-cccCCCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLL-KMLDFSEDTMVLYDFDKVPALVALQPSYNEHN-IFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~-~~~~~seel~~~y~~~~~PsIvlfk~~dee~~-~f~g~f~~~~L~~FI~~ 90 (288)
|.+.|.+..+.-... +...+. +-.+ ..+++..|++...|++++|++ ++.. ...| .+.+.|.+||..
T Consensus 33 k~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 33 KAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN--GELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC--CEEEEEEec-CChHHHHHHHhh
Confidence 345555555544443 222232 3344 678899999999999999984 3322 2344 477888888864
No 122
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.12 E-value=0.75 Score=35.27 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred HhhcccchhHHhhhc-ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR-KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~ 89 (288)
+.+.|.+..+..... ++....+-.+...++...+++.+.|++++|++ .+....+.|..+.+.|.+|++
T Consensus 29 ~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~-g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 29 RTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD-KELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC-CeEEEEEeCCccHHHHHHhhC
Confidence 444555555554443 34444455566678999999999999999974 222334677778888998874
No 123
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.57 Score=40.17 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred hhcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 22 NLLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
-|-|.+-....+-.. +.-.=+-.|-+-+++.+|++...|++++||+.+ +...+-|-.+.+.|.+||+..
T Consensus 78 ~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe-~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 78 MLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGE-KVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred HhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCE-EeeeecccCCHHHHHHHHHHH
Confidence 344555554444232 222224566678999999999999999999643 334567777888888888763
No 124
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.87 E-value=1.6 Score=33.69 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=45.9
Q ss_pred cccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEE
Q 023016 109 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 174 (288)
Q Consensus 109 ~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I 174 (288)
..+.++.+.++....=..=......++++++.+.++.|..+|.++++..++.+|+ ...|++++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 3445554444332222233577788899999887799999999999888999999 46899976
No 125
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=89.76 E-value=4.5 Score=32.95 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=57.9
Q ss_pred eeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCc-----------hhHHhhcCCC
Q 023016 96 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF-----------ADFADTFEAN 164 (288)
Q Consensus 96 V~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~-----------~~~le~fGL~ 164 (288)
+.+++.+.+... ..+....++++..+.=..=..+...|++++++.+ ..|..+|.+.. ..+.+.+++.
T Consensus 8 ~~~it~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEA-LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHH-HHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 344554444431 2233344555554443455678888999999844 55666666522 2444556641
Q ss_pred -CCCCCCeEEEEeCC-ceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 165 -KKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 165 -k~~~lPai~I~d~~-~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
.-...|++++++++ ..-...+ ...+.++|++|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G------~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCG------SSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeC------CCCCHHHHHHHhh
Confidence 11358999999855 3333332 1457999999874
No 126
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=89.66 E-value=2.2 Score=34.48 Aligned_cols=84 Identities=12% Similarity=0.209 Sum_probs=53.0
Q ss_pred EEEEEccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcC--chhHHhhcCCCCCCCCCe-EEEEe-CCceeeccCCCCCC
Q 023016 116 LAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK-MVVWD-GNENYLTVIGSESI 190 (288)
Q Consensus 116 l~~lf~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~--~~~~le~fGL~k~~~lPa-i~I~d-~~~KY~~~~~~~~~ 190 (288)
+++++..+..+.+.....++++|+.-+| =..+|||-.+ -.....-+.+ ..+.-|. ..+-+ .+..|-.+=
T Consensus 22 VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHYKdG~fHkdY----- 95 (112)
T cd03067 22 VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHYKDGDFHTEY----- 95 (112)
T ss_pred EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcccCCCccccc-----
Confidence 3445556666677888999999999999 7778887765 3456677777 3222222 22333 332332110
Q ss_pred CCCCCHHHHHHHHHH
Q 023016 191 DEEDQGSQISRFLEG 205 (288)
Q Consensus 191 ~~e~t~e~I~~Fl~~ 205 (288)
...++..++-+|+.+
T Consensus 96 dR~~t~kSmv~FlrD 110 (112)
T cd03067 96 NRQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhHHHHHHHhhC
Confidence 125799999999875
No 127
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=89.26 E-value=1.4 Score=31.18 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEE
Q 023016 127 SQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 175 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~ 175 (288)
-...+..+++++..+.++.|..+|.+++++..+.+|+ ...|++++-
T Consensus 14 C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i~ 59 (67)
T cd02973 14 CPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVIN 59 (67)
T ss_pred cHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEEC
Confidence 3567778888888776699999999888888888998 468998763
No 128
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=89.07 E-value=1.2 Score=44.86 Aligned_cols=70 Identities=7% Similarity=0.010 Sum_probs=45.6
Q ss_pred HhhcccchhHHhhhcc--eeeEeeecccc-HHH-HhHcCCCCCCeEEEEccCCCCccccc-CCCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK--FLTLLKMLDFS-EDT-MVLYDFDKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k--~~~v~~~~~~s-eel-~~~y~~~~~PsIvlfk~~dee~~~f~-g~f~~~~L~~FI~~ 90 (288)
+.+.|.+..+--..+. +..+-+-.+.. .++ +.+|++.+.|++++|++.......|. |..+.+.|.+||+.
T Consensus 387 k~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 387 QAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 3455665555444332 22222333332 233 46899999999999997654556787 57999999999975
No 129
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.24 E-value=3.6 Score=41.39 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc---CCCCeeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHH
Q 023016 58 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 134 (288)
Q Consensus 58 ~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n---slPLV~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l 134 (288)
..|++.+.++..+....|.|-=...++..||..= +-| =..+++++...++..+.+..+.++...+=..-......+
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~ 138 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL 138 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence 4699988874333446687743555677776652 333 345577777766555566655444333223345788888
Q ss_pred HHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEE
Q 023016 135 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 174 (288)
Q Consensus 135 ~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I 174 (288)
.++|..++.+.+-++|+..|++.++.+++ ..+|++++
T Consensus 139 ~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 139 NLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 99999888899999999999999999888 57899987
No 130
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=87.65 E-value=1.5 Score=39.94 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=48.2
Q ss_pred HhhcccchhHHhhhcceeeEe-eeccccHHHHhHcCCCCCCeEEEEccCCCCcccc-cCCCCHHHHHHHHHHcC
Q 023016 21 RNLLPLMSPFLIQMRKFLTLL-KMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQNF 92 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~-~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f-~g~f~~~~L~~FI~~ns 92 (288)
|.+.|.+..+.-..+....++ +--+-..++++.|++.+.|++++|++ ++...| .|..+.+.|.+|+....
T Consensus 68 k~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~--G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 68 RKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK--GKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC--CEEEEeeCCCCCHHHHHHHHHHHH
Confidence 455666655555544433343 22344578999999999999999994 333334 56789999999998874
No 131
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=87.19 E-value=1.8 Score=35.88 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHHHhHcCCC--CCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 48 EDTMVLYDFD--KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 48 eel~~~y~~~--~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
..+.+.+++. +.|++++++....+...+.|+++.++|.+|++.-
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHH
Confidence 3488889985 4899999998443333378999999999999885
No 132
>PLN02309 5'-adenylylsulfate reductase
Probab=86.92 E-value=1.8 Score=43.43 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=46.1
Q ss_pred HhhcccchhHHhhhc--ceeeEeeecc-ccHHHHh-HcCCCCCCeEEEEccCCCCcccccC-CCCHHHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLD-FSEDTMV-LYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQ 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~-~seel~~-~y~~~~~PsIvlfk~~dee~~~f~g-~f~~~~L~~FI~~ 90 (288)
+.+.|.+..+-...+ ++...-+--+ ...+++. .|++.++|++++|++.......|.| ..+.++|..||+.
T Consensus 381 q~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 381 QAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 344555554443332 2333333333 3456675 5999999999999976555567874 7899999999985
No 133
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=86.37 E-value=1.8 Score=32.59 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=41.2
Q ss_pred hhcccchhHHhh-hcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcc-cccCCCCHHHHHHHH
Q 023016 22 NLLPLMSPFLIQ-MRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHN-IFYGPFDEEFLEEFI 88 (288)
Q Consensus 22 ~~~~~~~~~~~~-~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~-~f~g~f~~~~L~~FI 88 (288)
.+.|.+..+... ..++..+.+-.+-..+++..|++.+.|++++|+. ++.. ...| ...+.|.++|
T Consensus 31 ~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 31 QMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN--GTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred HHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEEC--CEEEEEEeC-CCHHHHHHhh
Confidence 344444444444 4456666555555678999999999999999983 3332 2334 4677787766
No 134
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=86.29 E-value=2.9 Score=33.41 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=36.2
Q ss_pred ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCC--c---cccc--CCCCHHHHHHHH
Q 023016 36 KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNE--H---NIFY--GPFDEEFLEEFI 88 (288)
Q Consensus 36 k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee--~---~~f~--g~f~~~~L~~FI 88 (288)
++..+-+-.+-..++++.|++...|++++||+...- . ..+. ++++.+++++|+
T Consensus 53 ~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 53 ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 344444455666789999999999999999953211 0 1122 357888899886
No 135
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.18 E-value=6.3 Score=39.70 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=77.8
Q ss_pred CCCeEEEEccCCCCcccccCCCCHHHHHHHHHH---cCCCCeeecCccchhhhccccCCcEEEEEEccChhhHHHHHHHH
Q 023016 58 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ---NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 134 (288)
Q Consensus 58 ~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~---nslPLV~e~n~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l 134 (288)
..|++.+++...+....|.|-=...++..||.. -+-| -..+++++...++..+++..+.++...+=..-......+
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~ 139 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL 139 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH
Confidence 469998876433344667773344556666655 2334 366777777776555556554444333223345788888
Q ss_pred HHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEE
Q 023016 135 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 175 (288)
Q Consensus 135 ~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~ 175 (288)
.++|..++.+..-++|+..|++.++.+++ ..+|.++|.
T Consensus 140 ~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i~ 177 (515)
T TIGR03140 140 NQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFLN 177 (515)
T ss_pred HHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEEC
Confidence 99999998888999999999999998888 478999873
No 136
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.15 E-value=5.5 Score=38.52 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCc-eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 126 KSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 126 ~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~-KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
.-.++...++++|+.+++ +.++.||.+++..+.+.+++ ..+|++.++..+. ...+.. .-+.+++..|+
T Consensus 61 ~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i---~gfPtl~~f~~~~~~~~~~~-------~~~~~~~~~~~ 130 (383)
T KOG0191|consen 61 HCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGI---QGFPTLKVFRPGKKPIDYSG-------PRNAESLAEFL 130 (383)
T ss_pred chhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCC---ccCcEEEEEcCCCceeeccC-------cccHHHHHHHH
Confidence 346788889999999999 99999999999999999999 5789999998442 233322 46899999999
Q ss_pred HHHhcCccccccc
Q 023016 204 EGYREGRTEQKKV 216 (288)
Q Consensus 204 ~~fl~Gklkp~iK 216 (288)
...++-.......
T Consensus 131 ~~~~~~~~~~~~~ 143 (383)
T KOG0191|consen 131 IKELEPSVKKLVE 143 (383)
T ss_pred HHhhccccccccC
Confidence 9988877654333
No 137
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=85.81 E-value=8.1 Score=31.65 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEEeCcCc-------hhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHH
Q 023016 127 SQKLVTTLKAAASANRE-LVFCYVGIKQF-------ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 198 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~-------~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~ 198 (288)
-......+++++.++++ +.|+.||.++. ..+...+++ . ..+|++++++.+.+- .+ ++=.+.+.
T Consensus 43 Cr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~-~~iPT~~~~~~~~~l--~~-----~~c~~~~~ 113 (119)
T cd02952 43 CVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T-TGVPTLLRWKTPQRL--VE-----DECLQADL 113 (119)
T ss_pred HHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c-cCCCEEEEEcCCcee--cc-----hhhcCHHH
Confidence 35667789999999996 99999998753 366777888 4 479999999744332 11 11246677
Q ss_pred HHHHH
Q 023016 199 ISRFL 203 (288)
Q Consensus 199 I~~Fl 203 (288)
+..|+
T Consensus 114 ~~~~~ 118 (119)
T cd02952 114 VEMFF 118 (119)
T ss_pred HHHhh
Confidence 77765
No 138
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=84.58 E-value=17 Score=30.29 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEEEeCcC----------------------chhHHhhcCCCCCCCCCeEEEEe-CCc-e
Q 023016 127 SQKLVTTLKAAASANRE--LVFCYVGIKQ----------------------FADFADTFEANKKSKLPKMVVWD-GNE-N 180 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rg--l~Fv~VD~~~----------------------~~~~le~fGL~k~~~lPai~I~d-~~~-K 180 (288)
-......+.++++++++ +.++.++.+. .....+.||+ ..+|.+.+.+ ++. .
T Consensus 76 C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 76 CEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---GPLPTTFLIDKDGKVV 152 (173)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC---CCcCeEEEECCCCcEE
Confidence 44556677777777655 5555555431 2344677787 4689988888 443 3
Q ss_pred eeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 181 YLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 181 Y~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
+.+.+ ..+.+++.++++..
T Consensus 153 ~~~~g-------~~~~~~l~~~l~~~ 171 (173)
T PRK03147 153 KVITG-------EMTEEQLEEYLEKI 171 (173)
T ss_pred EEEeC-------CCCHHHHHHHHHHh
Confidence 33333 46888999988864
No 139
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=83.99 E-value=2.4 Score=33.55 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=28.1
Q ss_pred HHHhHcCCCCCCeEEEEccCCCCcccccC-------CCCHHHHHHHH
Q 023016 49 DTMVLYDFDKVPALVALQPSYNEHNIFYG-------PFDEEFLEEFI 88 (288)
Q Consensus 49 el~~~y~~~~~PsIvlfk~~dee~~~f~g-------~f~~~~L~~FI 88 (288)
+++..|++.+.|++++|+... ....+.| +++.+.|++|+
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred HHHHhcCCCcCCEEEEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence 889999999999999999532 1112222 46778888876
No 140
>PHA02278 thioredoxin-like protein
Probab=83.56 E-value=2.7 Score=33.29 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred HhhcccchhHHhh-hcceeeEeeecccc----HHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHH
Q 023016 21 RNLLPLMSPFLIQ-MRKFLTLLKMLDFS----EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEF 87 (288)
Q Consensus 21 ~~~~~~~~~~~~~-~~k~~~v~~~~~~s----eel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~F 87 (288)
|.+-|.+..+--. ..+...+-+-.+.. +++...|++.+.|++++||+. +......|..+.+.|.+|
T Consensus 30 k~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 30 EILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred HhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC-EEEEEEeCCCCHHHHHhh
Confidence 4555666665432 12222232333332 579999999999999999952 222335676777777765
No 141
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=83.08 E-value=12 Score=34.84 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=56.7
Q ss_pred cEEEEEEccC-hhhHHHHHHHHHHHHHhcCC-cEEEEEeCcC---------chhHHhhcCCCCCCCCCeEEEEeC-Ccee
Q 023016 114 IVLAIVEDET-EEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDG-NENY 181 (288)
Q Consensus 114 ~~l~~lf~~~-~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~---------~~~~le~fGL~k~~~lPai~I~d~-~~KY 181 (288)
.+.++.|..+ -..-......++++|++|.- +.++.+|... ....++.||+ ..+|++++.+. +.+.
T Consensus 167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPNQF 243 (271)
T ss_pred CeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCCEE
Confidence 3444444432 23346788899999999864 6667776642 2346788898 57999999994 4443
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHhc
Q 023016 182 LTVIGSESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 182 ~~~~~~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
.... ...++.++|.+.+.....
T Consensus 244 ~~v~-----~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIG-----FGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEE-----eCCCCHHHHHHHHHHHhc
Confidence 2211 125788999888877654
No 142
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=82.40 E-value=4.9 Score=31.22 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=41.4
Q ss_pred hhcccchhHHhhhcceeeEeeecccc---HHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHH
Q 023016 22 NLLPLMSPFLIQMRKFLTLLKMLDFS---EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k~~~v~~~~~~s---eel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~ 89 (288)
.+.|.+..+.-...++..+.+..+-+ .+++..|++.+.|++++|++. .....+.|. ....|..-|.
T Consensus 32 ~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G-~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 32 KIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG-EKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred HHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC-eEEEEEeCC-CHHHHHHHHH
Confidence 44566655555545555555555444 378999999999999999842 222345663 5566666554
No 143
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=81.76 E-value=4 Score=33.17 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=42.7
Q ss_pred HhhcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHH
Q 023016 21 RNLLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 85 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~ 85 (288)
|.+-|.+-.+--.... +..+-+-.+-..++...|++.+.||+++||+. .....+.|..+.++|.
T Consensus 45 ~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 45 LDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred hhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC-EEEEEEeCccCHHHHh
Confidence 4455666665555443 44445667777899999999999999999942 2222456766666554
No 144
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=79.86 E-value=10 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHhHcCCCCCCeEEEEccC-CCCcccccCCCCHHHHHHHHHH
Q 023016 48 EDTMVLYDFDKVPALVALQPS-YNEHNIFYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~-dee~~~f~g~f~~~~L~~FI~~ 90 (288)
.++...|++.+.|++++|.+. .+....+.|..+.+.+.++|+.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 678899999999999999975 2333456777788888888775
No 145
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=79.14 E-value=29 Score=35.53 Aligned_cols=103 Identities=9% Similarity=-0.068 Sum_probs=57.5
Q ss_pred CCCeeecCccchhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC--cEEEEEeC------------------
Q 023016 93 LPLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGI------------------ 151 (288)
Q Consensus 93 lPLV~e~n~et~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~------------------ 151 (288)
+|-+...+.+.... ..+++.++++.|.. -=..-...+..+.++++++++ +.|+.|..
T Consensus 38 lP~f~l~D~dG~~v--~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 38 LSTLKTADNRPASV--YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CCCeEeecCCCcee--eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHh
Confidence 55555444432222 12244444444432 112334566677777777763 55555432
Q ss_pred ----------cCchhHHhhcCCCCCCCCCeEEEEe-CC-ceeeccCCCCCCCCCCCHHHHHHHHHHHh
Q 023016 152 ----------KQFADFADTFEANKKSKLPKMVVWD-GN-ENYLTVIGSESIDEEDQGSQISRFLEGYR 207 (288)
Q Consensus 152 ----------~~~~~~le~fGL~k~~~lPai~I~d-~~-~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl 207 (288)
+....+.+.||+ ..+|+.+|.+ ++ ..+.+.+ ..+.++|.++++.-.
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV---~giPTt~IIDkdGkIV~~~~G-------~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNI---SVYPSWAIIGKDGDVQRIVKG-------SISEAQALALIRNPN 173 (521)
T ss_pred CCCcccceeccccHHHHHHcCC---CCcCeEEEEcCCCeEEEEEeC-------CCCHHHHHHHHHHhh
Confidence 122345667777 4789998888 43 3454444 578999999999433
No 146
>PF13728 TraF: F plasmid transfer operon protein
Probab=78.91 E-value=14 Score=33.12 Aligned_cols=76 Identities=8% Similarity=-0.015 Sum_probs=49.4
Q ss_pred EEEEEccChhhHHHHHHHHHHHHHhcCC-cEEEEEeCc---------CchhHHhhcCCCCCCCCCeEEEEe-CCcee-ec
Q 023016 116 LAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------QFADFADTFEANKKSKLPKMVVWD-GNENY-LT 183 (288)
Q Consensus 116 l~~lf~~~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~---------~~~~~le~fGL~k~~~lPai~I~d-~~~KY-~~ 183 (288)
+.+++..+-.--......++.+|++|.= +..+.+|+. .....++.||+ ...|++++.+ ++.+| +.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKKWYPV 200 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCeEEEE
Confidence 3433333333456888899999999932 777777754 12456788999 4789999999 45444 44
Q ss_pred cCCCCCCCCCCCHHHHH
Q 023016 184 VIGSESIDEEDQGSQIS 200 (288)
Q Consensus 184 ~~~~~~~~~e~t~e~I~ 200 (288)
.. .-++.++|.
T Consensus 201 ~~------G~~s~~~L~ 211 (215)
T PF13728_consen 201 SQ------GFMSLDELE 211 (215)
T ss_pred ee------ecCCHHHHH
Confidence 33 246666664
No 147
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=7 Score=37.18 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=56.2
Q ss_pred HhhcccchhHHhhhcceeeEe-eeccccHHHHhHcCCCCCCeEEEEccCCCCcc-cccCCCCHHHHHHHHHHcCC
Q 023016 21 RNLLPLMSPFLIQMRKFLTLL-KMLDFSEDTMVLYDFDKVPALVALQPSYNEHN-IFYGPFDEEFLEEFIKQNFL 93 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~-~~~~~seel~~~y~~~~~PsIvlfk~~dee~~-~f~g~f~~~~L~~FI~~nsl 93 (288)
+.|+|...-+--..+.-..++ |-.|-+..+...+++.+.|+|++|+ |+..+ -|-|...++.|..|+....-
T Consensus 59 ~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 59 KQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 557788777777776666555 6777889999999999999999999 44443 37888889999999998733
No 148
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.97 E-value=20 Score=33.59 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 127 SQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
-..+...|..+|.+|++..|.-||.++-..-+...|+ ...|+++.+.++.|-.... .-++..+++-+..|
T Consensus 36 Ck~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV---~amPTFiff~ng~kid~~q-------GAd~~gLe~kv~~~ 105 (288)
T KOG0908|consen 36 CKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGV---NAMPTFIFFRNGVKIDQIQ-------GADASGLEEKVAKY 105 (288)
T ss_pred HHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCc---ccCceEEEEecCeEeeeec-------CCCHHHHHHHHHHH
Confidence 3578889999999999999999999987777888898 4679999888655544434 25788888888888
Q ss_pred hcCc
Q 023016 207 REGR 210 (288)
Q Consensus 207 l~Gk 210 (288)
..-.
T Consensus 106 ~sts 109 (288)
T KOG0908|consen 106 ASTS 109 (288)
T ss_pred hccC
Confidence 7543
No 149
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=76.99 E-value=18 Score=27.74 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=44.0
Q ss_pred CcEEEEEEccCh-hhHHHHHHHHH---HHHHhcCC-cEEEEEeCcCc--------------------hhHHhhcCCCCCC
Q 023016 113 KIVLAIVEDETE-EKSQKLVTTLK---AAASANRE-LVFCYVGIKQF--------------------ADFADTFEANKKS 167 (288)
Q Consensus 113 ~~~l~~lf~~~~-e~~e~~~~~l~---~vAk~~rg-l~Fv~VD~~~~--------------------~~~le~fGL~k~~ 167 (288)
+.+.+++|.... ..=..+.+.+. +++...++ +.++.++.... ..++..+|+ .
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v---~ 81 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV---N 81 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC---C
Confidence 345555554322 22223333333 56666665 66666666532 235778888 5
Q ss_pred CCCeEEEEe-CCc-eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 168 KLPKMVVWD-GNE-NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 168 ~lPai~I~d-~~~-KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
..|++++.| +++ .+.+.+ -.+++++.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G-------~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPG-------YLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEES-------S--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecC-------CCCHHHHHhhC
Confidence 789999998 444 344444 36788887764
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=76.31 E-value=17 Score=26.76 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHH
Q 023016 127 SQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
-+.+...++++++++.. +.|+.+|.. ..+..+|+ ..+|++++ |+...+ .+ ..-+.+++.+++
T Consensus 13 C~~~~~~~~~~~~e~~~~~~~~~v~~~---~~a~~~~v---~~vPti~i-~G~~~~--~G------~~~~~~~l~~~l 75 (76)
T TIGR00412 13 CQMTEKNVKKAVEELGIDAEFEKVTDM---NEILEAGV---TATPGVAV-DGELVI--MG------KIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHcCC---CcCCEEEE-CCEEEE--Ee------ccCCHHHHHHHh
Confidence 45778899999999987 899888832 23555677 57899998 433332 22 012456777665
No 151
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=76.17 E-value=33 Score=31.14 Aligned_cols=111 Identities=12% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHcCCCCeeecCccchhh-hccccCCcEEEE-EEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCC
Q 023016 86 EFIKQNFLPLSVPINQDTLNL-LKDDKRKIVLAI-VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEA 163 (288)
Q Consensus 86 ~FI~~nslPLV~e~n~et~~~-l~~~~~~~~l~~-lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL 163 (288)
+=-..+++.-|.++|..-+.. +...+.++-+++ ++..+-....-+...|..+|.+|+.+.|+-+-+.. .+..+
T Consensus 83 ~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~---cIpNY-- 157 (240)
T KOG3170|consen 83 ATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT---CIPNY-- 157 (240)
T ss_pred HHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccc---ccCCC--
Confidence 334457899999999755443 434444543333 33334445567888999999999999999887662 23322
Q ss_pred CCCCCCCeEEEEe-CCc--eeeccCCCCCC-CCCCCHHHHHHHHHH
Q 023016 164 NKKSKLPKMVVWD-GNE--NYLTVIGSESI-DEEDQGSQISRFLEG 205 (288)
Q Consensus 164 ~k~~~lPai~I~d-~~~--KY~~~~~~~~~-~~e~t~e~I~~Fl~~ 205 (288)
....+|++.|+. +.- .|.-+- ++ ..-.|.+++.-|+-.
T Consensus 158 -Pe~nlPTl~VY~~G~lk~q~igll---~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 158 -PESNLPTLLVYHHGALKKQMIGLL---ELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred -cccCCCeEEEeecchHHhheehhh---hhcCCcCCHHHHHHHHHh
Confidence 457899999998 432 331110 01 124688999888754
No 152
>PTZ00051 thioredoxin; Provisional
Probab=75.67 E-value=5.8 Score=29.85 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=38.5
Q ss_pred HhhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCc-ccccCCCCHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEH-NIFYGPFDEEFLE 85 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~-~~f~g~f~~~~L~ 85 (288)
|.+.|.+..+......+..+.+-.+-..+++.+|++.+.|++++|+. ++. ..+.|. ..++|.
T Consensus 34 ~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 34 KRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKN--GSVVDTLLGA-NDEALK 96 (98)
T ss_pred HHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeC--CeEEEEEeCC-CHHHhh
Confidence 34445555544444445555555555678999999999999999983 332 234553 444443
No 153
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=75.62 E-value=24 Score=25.88 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 128 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 128 e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
....+.+++++..+. +..-.+|...++++ ..+|+ ...|+++| |+..+| .+ .--+.+.|.+|++
T Consensus 14 ~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalvI-ng~~~~--~G------~~p~~~el~~~l~ 76 (76)
T PF13192_consen 14 PELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALVI-NGKVVF--VG------RVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEEE-TTEEEE--ES------S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEEE-CCEEEE--Ee------cCCCHHHHHHHhC
Confidence 478888999999884 77788888766666 88888 57899976 322233 22 1347888888875
No 154
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=73.80 E-value=33 Score=25.31 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEEEeCcCc-----------------------hhHHhhcCCCCCCCCCeEEEEe
Q 023016 127 SQKLVTTLKAAASANR--ELVFCYVGIKQF-----------------------ADFADTFEANKKSKLPKMVVWD 176 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~r--gl~Fv~VD~~~~-----------------------~~~le~fGL~k~~~lPai~I~d 176 (288)
-......+.++.+++. ++.++.++.+.. ..+.+.||+ ...|.+++.|
T Consensus 34 C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~l~d 105 (116)
T cd02966 34 CRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV---RGLPTTFLID 105 (116)
T ss_pred HHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc---CccceEEEEC
Confidence 4566777888888885 377777766543 345666777 3678888887
No 155
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=71.73 E-value=17 Score=26.15 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=35.8
Q ss_pred eeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 37 FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 37 ~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
+..+-+-.+-+.++.+.|++...|++++ +++ ..+.|..+.+.|.++|...
T Consensus 32 ~~~~~vd~~~~~~~~~~~~v~~vPt~~~----~g~-~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 32 VEVEYINVMENPQKAMEYGIMAVPAIVI----NGD-VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred eEEEEEeCccCHHHHHHcCCccCCEEEE----CCE-EEEecCCCHHHHHHHHHhh
Confidence 3334344455678889999999999875 222 3677877888999988753
No 156
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=69.81 E-value=48 Score=34.16 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHhcCCcEEEEEeCcCc----hhHHhhcCCCCCCCCCeEEEEe-CCce---eeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 135 KAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD-GNEN---YLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 135 ~~vAk~~rgl~Fv~VD~~~~----~~~le~fGL~k~~~lPai~I~d-~~~K---Y~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
.+++++++++.++.+|.+++ .+.++.||+ ...|++++++ +++. +...+ ..+.+++.+++++.
T Consensus 500 ~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~i~~~r~~G-------~~~~~~f~~~L~~~ 569 (571)
T PRK00293 500 PQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQEIPDARVTG-------FMDAAAFAAHLRQL 569 (571)
T ss_pred HHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCCcccccccC-------CCCHHHHHHHHHHh
Confidence 45666666788888998753 456788998 4789999998 4432 33333 57899999999875
Q ss_pred h
Q 023016 207 R 207 (288)
Q Consensus 207 l 207 (288)
.
T Consensus 570 ~ 570 (571)
T PRK00293 570 Q 570 (571)
T ss_pred c
Confidence 3
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=69.52 E-value=31 Score=35.17 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=70.1
Q ss_pred ccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe-CCc----eeecc
Q 023016 110 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD-GNE----NYLTV 184 (288)
Q Consensus 110 ~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d-~~~----KY~~~ 184 (288)
+.+++.+.++...+.+.+.++++.++++|.....+.+...|.....+..+.+|+ ...|++.|.+ ++. +|.
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v---~~~P~~~i~~~~~~~~~i~f~-- 438 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKI---TKLPTVALLDDDGNYTGLKFH-- 438 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCC---CcCCEEEEEeCCCcccceEEE--
Confidence 334444444444344478899999999997654487777776656677888888 4679999986 332 331
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-CccccccccCC------CCCCC--ceEEeecchhHH
Q 023016 185 IGSESIDEEDQGSQISRFLEGYRE-GRTEQKKVAGP------SIFGF--VNSLIGIRSVYI 236 (288)
Q Consensus 185 ~~~~~~~~e~t~e~I~~Fl~~fl~-Gklkp~iKSeP------~~~~~--v~~lVg~~~~~i 236 (288)
+ --....+..|+...++ |.-.+.+ |+. ....+ ++.+|+.+=+|-
T Consensus 439 g-------~P~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~C 491 (555)
T TIGR03143 439 G-------VPSGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLC 491 (555)
T ss_pred e-------cCccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCc
Confidence 1 1246678899999765 3333322 321 12233 456677766653
No 158
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=68.82 E-value=14 Score=29.43 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=36.5
Q ss_pred eeeEeeeccccHHHHhHcCCCC--CCeEEEEccCCCCccc-ccCCCCHHHHHHHHHH
Q 023016 37 FLTLLKMLDFSEDTMVLYDFDK--VPALVALQPSYNEHNI-FYGPFDEEFLEEFIKQ 90 (288)
Q Consensus 37 ~~~v~~~~~~seel~~~y~~~~--~PsIvlfk~~dee~~~-f~g~f~~~~L~~FI~~ 90 (288)
+.-|.+-.+-..-++..++++. .|.+++....+..... +.+.++.+.|++|++.
T Consensus 50 i~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~ 106 (111)
T cd03072 50 INFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLD 106 (111)
T ss_pred EEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHH
Confidence 4434333333334889999986 7988888763323444 5678999999999986
No 159
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=66.32 E-value=32 Score=28.32 Aligned_cols=95 Identities=13% Similarity=0.254 Sum_probs=44.0
Q ss_pred ccchhhhccccCCcEEEEEEccChhhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEe-CCc
Q 023016 101 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD-GNE 179 (288)
Q Consensus 101 ~et~~~l~~~~~~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d-~~~ 179 (288)
.+....++....+...+++...-=.+.......+.++|+..+++.+-++.-+++...++.+--+.....|++++.| ++.
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 3333444344444444444333224667889999999999888444444444555555543222446799999998 322
Q ss_pred ---eeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 180 ---NYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 180 ---KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
.|. + -++.+++++.+|
T Consensus 110 ~lg~wg--e---------rP~~~~~~~~~~ 128 (129)
T PF14595_consen 110 ELGRWG--E---------RPKEVQELVDEY 128 (129)
T ss_dssp EEEEEE--S---------S-HHHH------
T ss_pred EeEEEc--C---------CCHHHhhccccC
Confidence 332 1 466677666654
No 160
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=65.44 E-value=22 Score=29.54 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=46.9
Q ss_pred HhhcccchhHHhhhc--ceeeEeeecc----------------------ccHHHHhHcCCCCCCeEEEEccCCCCccccc
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLD----------------------FSEDTMVLYDFDKVPALVALQPSYNEHNIFY 76 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~----------------------~seel~~~y~~~~~PsIvlfk~~dee~~~f~ 76 (288)
+..+|.+..+....+ ++..+++..+ ...+++..|++...|+++++.+...-...+.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~ 156 (173)
T PRK03147 77 EKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVIT 156 (173)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEe
Confidence 455566666665443 3666666543 3356778899999999999975322122467
Q ss_pred CCCCHHHHHHHHHH
Q 023016 77 GPFDEEFLEEFIKQ 90 (288)
Q Consensus 77 g~f~~~~L~~FI~~ 90 (288)
|..+.+.|.+++..
T Consensus 157 g~~~~~~l~~~l~~ 170 (173)
T PRK03147 157 GEMTEEQLEEYLEK 170 (173)
T ss_pred CCCCHHHHHHHHHH
Confidence 88888899998875
No 161
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.57 E-value=8.6 Score=35.28 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=45.3
Q ss_pred EccChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCC---CCCCCeEEEEeC
Q 023016 120 EDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK---KSKLPKMVVWDG 177 (288)
Q Consensus 120 f~~~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k---~~~lPai~I~d~ 177 (288)
|...+.+-......|.++..+|-. +.|+.+|...|++..+.|+++. ..|+|++++..+
T Consensus 152 fa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~ 214 (265)
T KOG0914|consen 152 FACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQK 214 (265)
T ss_pred EeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEcc
Confidence 444444444566778888888877 9999999999999999998852 258999998883
No 162
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=63.01 E-value=21 Score=33.25 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=48.8
Q ss_pred HhhcccchhHHhhhcceeeEeeeccc-----------cHHHHhHcCCCCCCeEEEEccCCCCc-ccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDF-----------SEDTMVLYDFDKVPALVALQPSYNEH-NIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~-----------seel~~~y~~~~~PsIvlfk~~dee~-~~f~g~f~~~~L~~FI 88 (288)
+...|.+..|.-.. ++.++++..|- +..+...+++...|+++++++..+.. ....|..+.+.|.++|
T Consensus 182 ~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 182 HQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred HHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHH
Confidence 45667777765543 35555555543 35688899999999999999643322 2345788899999988
Q ss_pred HHcC
Q 023016 89 KQNF 92 (288)
Q Consensus 89 ~~ns 92 (288)
..-.
T Consensus 261 ~~~a 264 (271)
T TIGR02740 261 LLAA 264 (271)
T ss_pred HHHh
Confidence 7653
No 163
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=62.70 E-value=11 Score=34.49 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 125 EKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 125 e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
+.-+.+-..+.=+|..|+-+.|+-+-+.. -.+-+.|.+ ..+|++.|+.++
T Consensus 172 ~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~---n~lP~LliYkgG 221 (273)
T KOG3171|consen 172 KGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSL---NVLPTLLIYKGG 221 (273)
T ss_pred chHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcc---cCCceEEEeeCC
Confidence 34567888889999999999999887652 234566766 478999999844
No 164
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=62.15 E-value=73 Score=29.62 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=49.6
Q ss_pred EEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCc---------hhHHhhcCCCCCCCCCeEEEEe-CCcee-eccC
Q 023016 119 VEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWD-GNENY-LTVI 185 (288)
Q Consensus 119 lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~---------~~~le~fGL~k~~~lPai~I~d-~~~KY-~~~~ 185 (288)
+|+. +...-......++..|++|.= +..+.+|+... ...++.||+ ...|++++.+ +..+| +..-
T Consensus 156 fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~~~pv~~ 232 (256)
T TIGR02739 156 FFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQKMSPLAY 232 (256)
T ss_pred EEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCcEEEEee
Confidence 3443 334456788889999998865 88888887732 235778888 4689999999 43444 4432
Q ss_pred CCCCCCCCCCHHHHHH
Q 023016 186 GSESIDEEDQGSQISR 201 (288)
Q Consensus 186 ~~~~~~~e~t~e~I~~ 201 (288)
.-++.++|.+
T Consensus 233 ------G~iS~deL~~ 242 (256)
T TIGR02739 233 ------GFISQDELKE 242 (256)
T ss_pred ------ccCCHHHHHH
Confidence 3567777644
No 165
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=61.89 E-value=27 Score=27.99 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=31.2
Q ss_pred HHHhHcCCCC----CCeEEEEccCCCCcccccCCC-CHHHHHHHHHH
Q 023016 49 DTMVLYDFDK----VPALVALQPSYNEHNIFYGPF-DEEFLEEFIKQ 90 (288)
Q Consensus 49 el~~~y~~~~----~PsIvlfk~~dee~~~f~g~f-~~~~L~~FI~~ 90 (288)
.+++.++++. .|+++++.. ++.+....+++ +.++|.+|++.
T Consensus 64 ~~l~~fgl~~~~~~~P~~~i~~~-~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 64 HELEEFGLDFSGGEKPVVAIRTA-KGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHHcCCCcccCCCCEEEEEeC-CCCccCCCcccCCHHHHHHHHHH
Confidence 3788889874 799999875 33344457788 99999999975
No 166
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=61.70 E-value=25 Score=30.39 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHhHcCCCCCCeEEEEccCCCC--cccc----cCCCCHHHHHHHHHHc
Q 023016 49 DTMVLYDFDKVPALVALQPSYNE--HNIF----YGPFDEEFLEEFIKQN 91 (288)
Q Consensus 49 el~~~y~~~~~PsIvlfk~~dee--~~~f----~g~f~~~~L~~FI~~n 91 (288)
++...|++...|++++||....- ..-+ ..+|+.+.|+.|+...
T Consensus 126 ~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 126 GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 78999999999999999953210 0111 1268899999998764
No 167
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=61.54 E-value=10 Score=27.95 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=26.8
Q ss_pred cHHHHhHcCCCCCCeEEEEccCCCCcccccC-CCCHHHHHHHHH
Q 023016 47 SEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIK 89 (288)
Q Consensus 47 seel~~~y~~~~~PsIvlfk~~dee~~~f~g-~f~~~~L~~FI~ 89 (288)
.+++ .+|++...|++++ ++...|.| --+.+.|.+||+
T Consensus 39 ~~~~-~~ygv~~vPalvI-----ng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 39 FEEI-EKYGVMSVPALVI-----NGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHH-HHTT-SSSSEEEE-----TTEEEEESS--HHHHHHHHHH
T ss_pred HHHH-HHcCCCCCCEEEE-----CCEEEEEecCCCHHHHHHHhC
Confidence 3455 9999999999977 34667888 457888999985
No 168
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=60.64 E-value=12 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHhHcCCCCCCeEEEEccCCCC-cccccCCCCHHHHHHHH
Q 023016 48 EDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~dee-~~~f~g~f~~~~L~~FI 88 (288)
.+++..|++.+.|+++++.+ +++ ...+.|-.+.+.|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 46889999999999999864 233 22467888888888764
No 169
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=59.82 E-value=82 Score=29.17 Aligned_cols=82 Identities=6% Similarity=-0.013 Sum_probs=53.2
Q ss_pred EEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcC---c------hhHHhhcCCCCCCCCCeEEEEe-CCcee-eccC
Q 023016 119 VEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---F------ADFADTFEANKKSKLPKMVVWD-GNENY-LTVI 185 (288)
Q Consensus 119 lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~---~------~~~le~fGL~k~~~lPai~I~d-~~~KY-~~~~ 185 (288)
+|+. +..--......++..|++|.= +.-+.+|+.- + ...++.+|+ ...|++++.+ ...+| ++.-
T Consensus 149 fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~PAl~Lv~~~t~~~~pv~~ 225 (248)
T PRK13703 149 FFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV---KYFPALMLVDPKSGSVRPLSY 225 (248)
T ss_pred EEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC---cccceEEEEECCCCcEEEEee
Confidence 3443 334456788889999998865 8888888742 2 124567887 4689999999 44444 4432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcC
Q 023016 186 GSESIDEEDQGSQISRFLEGYREG 209 (288)
Q Consensus 186 ~~~~~~~e~t~e~I~~Fl~~fl~G 209 (288)
.-++.++|.+=+.....|
T Consensus 226 ------G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 226 ------GFITQDDLAKRFLNVSTD 243 (248)
T ss_pred ------ccCCHHHHHHHHHHHHhc
Confidence 357888776555444444
No 170
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=57.62 E-value=30 Score=27.95 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCC
Q 023016 125 EKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 178 (288)
Q Consensus 125 e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~ 178 (288)
.+..+..-.+=++.+.|.+ +..+.++.+.......-||+ ..+|++++..++
T Consensus 41 ~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaLvf~R~g 92 (107)
T PF07449_consen 41 PETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPALVFFRDG 92 (107)
T ss_dssp TTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEEEEEETT
T ss_pred cccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeEEEEECC
Confidence 3455677788899999999 88888885555566788999 578999998755
No 171
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=54.63 E-value=26 Score=28.53 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=31.9
Q ss_pred hhcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEcc
Q 023016 22 NLLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQP 67 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~ 67 (288)
.+-|.+..+--.... +..+-+-.+-..++.+.|++.+.|++++||+
T Consensus 31 ~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 31 QMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEEC
Confidence 444555554444343 2334456666789999999999999999995
No 172
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=54.46 E-value=33 Score=27.79 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHhhcccchhHHhhhc-ceeeEeeeccc----c-----HHHHhHcCCC----CCCeEEEEccCCCCcccccC-CCCHHHH
Q 023016 20 LRNLLPLMSPFLIQMR-KFLTLLKMLDF----S-----EDTMVLYDFD----KVPALVALQPSYNEHNIFYG-PFDEEFL 84 (288)
Q Consensus 20 ~~~~~~~~~~~~~~~~-k~~~v~~~~~~----s-----eel~~~y~~~----~~PsIvlfk~~dee~~~f~g-~f~~~~L 84 (288)
-|.+.|.+..+.-..+ ++.-|-+-.+. + .+++..|++. +.|++++|++.. ......| ..+.+.|
T Consensus 38 C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l 116 (122)
T TIGR01295 38 CRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK-QVSVRCGSSTTAQEL 116 (122)
T ss_pred HHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHH
Confidence 3677788887766532 14444333211 1 2556676654 489999999532 2233456 4468889
Q ss_pred HHHHH
Q 023016 85 EEFIK 89 (288)
Q Consensus 85 ~~FI~ 89 (288)
++|+.
T Consensus 117 ~~~~~ 121 (122)
T TIGR01295 117 QDIAA 121 (122)
T ss_pred HHHhh
Confidence 99874
No 173
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=53.82 E-value=79 Score=25.25 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred CcEEEEEEccC-hhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCch-hHHhhcCCCCCCCCCeEEEEe
Q 023016 113 KIVLAIVEDET-EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWD 176 (288)
Q Consensus 113 ~~~l~~lf~~~-~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~-~~le~fGL~k~~~lPai~I~d 176 (288)
+.++++.|..+ =..-..+...+.+.+..... ..|+.+|.+..+ ...+.|+. ....+|++++.+
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~ 84 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLD 84 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEEC
Confidence 34444444321 12334555566665554433 567777766543 33466777 433499999998
No 174
>PTZ00062 glutaredoxin; Provisional
Probab=53.77 E-value=1.2e+02 Score=27.24 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=68.5
Q ss_pred hhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcCCCCeeecCc
Q 023016 22 NLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ 101 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~nslPLV~e~n~ 101 (288)
.+.|.+..+..+..++.-+-|-.+ |++...|++++|+... ....+.|. +...|..+|+...-+.-.+
T Consensus 34 ~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~-~i~r~~G~-~~~~~~~~~~~~~~~~~~~--- 100 (204)
T PTZ00062 34 QLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ-LINSLEGC-NTSTLVSFIRGWAQKGSSE--- 100 (204)
T ss_pred HHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-EEeeeeCC-CHHHHHHHHHHHcCCCCHH---
Confidence 444555555555555444443322 9999999999999421 22234553 6778888887764432211
Q ss_pred cchhhhc-cccCCcEEEEEEccCh-----hhHHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcC-CCCCCCCCeEEE
Q 023016 102 DTLNLLK-DDKRKIVLAIVEDETE-----EKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFE-ANKKSKLPKMVV 174 (288)
Q Consensus 102 et~~~l~-~~~~~~~l~~lf~~~~-----e~~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fG-L~k~~~lPai~I 174 (288)
+....+. ..+. .+++++.-.+. ......++.|++ +++.|...|..+-++.-+.+. .+....+|.+.|
T Consensus 101 ~~~~~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-----~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNS-----SGVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHH-----cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 1111111 1222 23343333211 123455555553 246777777764443323221 111246798887
Q ss_pred E
Q 023016 175 W 175 (288)
Q Consensus 175 ~ 175 (288)
-
T Consensus 175 ~ 175 (204)
T PTZ00062 175 N 175 (204)
T ss_pred C
Confidence 3
No 175
>smart00594 UAS UAS domain.
Probab=51.76 E-value=43 Score=26.86 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=49.1
Q ss_pred hchhhHH--HHHHhhc--ccchhHHhhhcceeeEeeecccc--HHHHhHcCCCCCCeEEEEccCCCCc-----ccccCCC
Q 023016 11 EKQNCLS--VILRNLL--PLMSPFLIQMRKFLTLLKMLDFS--EDTMVLYDFDKVPALVALQPSYNEH-----NIFYGPF 79 (288)
Q Consensus 11 ~~~~~~~--~~~~~~~--~~~~~~~~~~~k~~~v~~~~~~s--eel~~~y~~~~~PsIvlfk~~dee~-----~~f~g~f 79 (288)
..++|.. ..-|+.+ |.|..++- +++..+++-.+.+ .+++..|++++.|+++++.+..++. ....|..
T Consensus 35 ~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~ 112 (122)
T smart00594 35 HSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEI 112 (122)
T ss_pred eCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCC
Confidence 3444543 3345554 67777773 3677765433322 6688999999999999998754321 1357888
Q ss_pred CHHHHHHHH
Q 023016 80 DEEFLEEFI 88 (288)
Q Consensus 80 ~~~~L~~FI 88 (288)
+.+.|..++
T Consensus 113 ~~~~l~~~l 121 (122)
T smart00594 113 SPEELMTFL 121 (122)
T ss_pred CHHHHHHhh
Confidence 887777664
No 176
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=50.59 E-value=1.2e+02 Score=23.64 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHhcCC-cEEEEEeCcC--chhHHhhcCCCCCCCCCeEEEEeC-Cc--eeeccCCCCCCCCCCCHHHHHHHHHHHhcC
Q 023016 136 AAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDG-NE--NYLTVIGSESIDEEDQGSQISRFLEGYREG 209 (288)
Q Consensus 136 ~vAk~~rg-l~Fv~VD~~~--~~~~le~fGL~k~~~lPai~I~d~-~~--KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~G 209 (288)
++.+.... +.++-+|.+. ...+++.++. ..+|.+++.+. +. -+...+ ..+++.+.+-++.+.++
T Consensus 44 ~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~g~~l~~~~G-------~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 44 SVKEFIRENFIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRTGEVLKVWSG-------NITPEDLLSQLIEFLEE 113 (114)
T ss_pred HHHHHHHhCEEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCccCcEeEEEcC-------CCCHHHHHHHHHHHHhc
Confidence 34444444 6666667653 3356777877 57999999983 32 344433 47888888877776543
No 177
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=50.01 E-value=62 Score=20.21 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHh---hcCCCCCCCCCeEEEEeC
Q 023016 127 SQKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDG 177 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le---~fGL~k~~~lPai~I~d~ 177 (288)
-......+.+.+...+++.+..++.+......+ .++. ...|++++.+.
T Consensus 12 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~ 62 (69)
T cd01659 12 CQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGP 62 (69)
T ss_pred HHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeC
Confidence 345555555553334448999998886655433 4555 57899988873
No 178
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=49.77 E-value=28 Score=29.61 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=36.0
Q ss_pred HhhcccchhHHhhhc--ceeeEeeeccccHHHHhHcCCCC------CCeEEEEcc
Q 023016 21 RNLLPLMSPFLIQMR--KFLTLLKMLDFSEDTMVLYDFDK------VPALVALQP 67 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~--k~~~v~~~~~~seel~~~y~~~~------~PsIvlfk~ 67 (288)
+.+.|.+..+..... ++..+.+--+-+.+++..|++.. .|++++|+.
T Consensus 63 k~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~ 117 (152)
T cd02962 63 VNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQG 117 (152)
T ss_pred HHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEEC
Confidence 566777777766543 46666666677789999999987 899999994
No 179
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=49.65 E-value=51 Score=26.06 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.3
Q ss_pred ccHHHHhHcCCCCCCeEEEEccCC
Q 023016 46 FSEDTMVLYDFDKVPALVALQPSY 69 (288)
Q Consensus 46 ~seel~~~y~~~~~PsIvlfk~~d 69 (288)
...+++..|++.+.|++++|++..
T Consensus 66 ~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 66 ENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred hhHHHHHhCCCCCCCEEEEECCCC
Confidence 346789999999999999999643
No 180
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=48.47 E-value=63 Score=26.45 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=39.6
Q ss_pred HHHHhc-CCcEEEEEeCcCchhHHh--------hcCCCCCCCCCeEEEEe-CCc-eee---ccCCCCCCCCCCCHHHHHH
Q 023016 136 AAASAN-RELVFCYVGIKQFADFAD--------TFEANKKSKLPKMVVWD-GNE-NYL---TVIGSESIDEEDQGSQISR 201 (288)
Q Consensus 136 ~vAk~~-rgl~Fv~VD~~~~~~~le--------~fGL~k~~~lPai~I~d-~~~-KY~---~~~~~~~~~~e~t~e~I~~ 201 (288)
++++.. +++.++.+|.++.++..+ .+|. ..+|++++.+ +++ .|. ++. ..+.+...+..
T Consensus 42 ~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~---~G~Pt~vfl~~~G~~~~~~~~~~~-----~~~~~~~~~~~ 113 (124)
T cd02955 42 EVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ---GGWPLNVFLTPDLKPFFGGTYFPP-----EDRYGRPGFKT 113 (124)
T ss_pred HHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---CCCCEEEEECCCCCEEeeeeecCC-----CCcCCCcCHHH
Confidence 455553 348889999987654322 2455 4789999999 332 331 122 23566677888
Q ss_pred HHHHHh
Q 023016 202 FLEGYR 207 (288)
Q Consensus 202 Fl~~fl 207 (288)
+++.++
T Consensus 114 ~~~~~~ 119 (124)
T cd02955 114 VLEKIR 119 (124)
T ss_pred HHHHHH
Confidence 887764
No 181
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=46.53 E-value=75 Score=32.78 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHhHcCCCCCCeEEEEccCCCC--cccccCCCCHHHHHHHHHHc
Q 023016 48 EDTMVLYDFDKVPALVALQPSYNE--HNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~dee--~~~f~g~f~~~~L~~FI~~n 91 (288)
.+++++|++.+.|++++|++..++ ...+.|..+.+++.+++++.
T Consensus 524 ~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 524 VALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 578999999999999999854333 23467888999999999864
No 182
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=46.49 E-value=1.4e+02 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=23.6
Q ss_pred hhHHhhcCCCCCCCCCeEEEEe-CCceeeccCCCCCCCCCCCHHHHH
Q 023016 155 ADFADTFEANKKSKLPKMVVWD-GNENYLTVIGSESIDEEDQGSQIS 200 (288)
Q Consensus 155 ~~~le~fGL~k~~~lPai~I~d-~~~KY~~~~~~~~~~~e~t~e~I~ 200 (288)
..+...|++ ..+|++++.+ ++..|...+ -.+.+.|.
T Consensus 83 ~~~~~~~~i---~~~P~~~vid~~gi~~~~~g-------~~~~~~~~ 119 (123)
T cd03011 83 GVISARWGV---SVTPAIVIVDPGGIVFVTTG-------VTSEWGLR 119 (123)
T ss_pred cHHHHhCCC---CcccEEEEEcCCCeEEEEec-------cCCHHHHH
Confidence 356777888 4689999998 444555443 35666664
No 183
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=45.30 E-value=1.2e+02 Score=22.43 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeC-C---ceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 129 KLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-N---ENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 129 ~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~-~---~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
...+.+++++...+ +..-.+|..+.+...+.+|. ..|.+.+.+. . ..... -.++.+++.+|++
T Consensus 15 ~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~----~IPVl~~~~~~~~~~~~~~~--------~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 15 EAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY----RIPVLHIDGIRQFKEQEELK--------WRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT----STSEEEETT-GGGCTSEEEE--------SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC----CCCEEEEcCcccccccceeC--------CCCCHHHHHHHhC
Confidence 45555555443332 88888899877777788887 5898776541 1 11111 1488999999985
No 184
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=42.97 E-value=75 Score=25.90 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=40.7
Q ss_pred HhhcccchhHHhhhc-c--eeeEeeec-----cccHHHHhHcCCC-CCCeEEEEccCCCCcccccCCCCHHHHHHHH
Q 023016 21 RNLLPLMSPFLIQMR-K--FLTLLKML-----DFSEDTMVLYDFD-KVPALVALQPSYNEHNIFYGPFDEEFLEEFI 88 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~-k--~~~v~~~~-----~~seel~~~y~~~-~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI 88 (288)
|.+-|.+..+.-... + ++.|.+.. +-+.+++.+|++. +.|++++|+.. +...=+.=++.+.+..|.
T Consensus 44 r~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~--~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 44 VKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP--QRLVEDECLQADLVEMFF 118 (119)
T ss_pred HhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC--ceecchhhcCHHHHHHhh
Confidence 566777777766655 3 44444332 3357999999998 99999999742 222111114566666664
No 185
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=42.02 E-value=1.8e+02 Score=23.38 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=47.1
Q ss_pred CcEEEEEEcc--ChhhHHHHHHHHHHHHHhcCC---cEEEEEeCcCch-----------hHHhhcCCCCCCCCCeEEEEe
Q 023016 113 KIVLAIVEDE--TEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFA-----------DFADTFEANKKSKLPKMVVWD 176 (288)
Q Consensus 113 ~~~l~~lf~~--~~e~~e~~~~~l~~vAk~~rg---l~Fv~VD~~~~~-----------~~le~fGL~k~~~lPai~I~d 176 (288)
..+++ +|.+ ++..+....+.|++....+.. +.|+.++..... ...+.|++ ....+-.+.|-.
T Consensus 10 ~R~lv-v~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~~~~f~~vLiGK 87 (118)
T PF13778_consen 10 NRLLV-VFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-PPGGFTVVLIGK 87 (118)
T ss_pred CceEE-EECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-CCCceEEEEEeC
Confidence 33444 4443 333456677777775555544 556665554332 45678888 555554444444
Q ss_pred -CCceeeccCCCCCCCCCCCHHHHHHHHHH
Q 023016 177 -GNENYLTVIGSESIDEEDQGSQISRFLEG 205 (288)
Q Consensus 177 -~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~ 205 (288)
++.|-..+ ..++.+.|-+.|+.
T Consensus 88 DG~vK~r~~-------~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 88 DGGVKLRWP-------EPIDPEELFDTIDA 110 (118)
T ss_pred CCcEEEecC-------CCCCHHHHHHHHhC
Confidence 34444332 25789999888765
No 186
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=41.75 E-value=3.1e+02 Score=28.67 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=81.8
Q ss_pred HhhcccchhHHhhhcce------eeEeeeccccHHHHhHcCCCCCCeEEEEccCCCC---cccccCCCCHHHHHHHHHH-
Q 023016 21 RNLLPLMSPFLIQMRKF------LTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNE---HNIFYGPFDEEFLEEFIKQ- 90 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~------~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee---~~~f~g~f~~~~L~~FI~~- 90 (288)
|+.-|-+..|--+.++- ..|--|.+....+|-++++..+|+|.-|.+.-.. -..+.|+-...++.+.+..
T Consensus 73 r~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 73 RAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred hhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 66777777777777653 3344567777899999999999999999874211 1123443333334333332
Q ss_pred ----------cCCCCeeecCcc-chhhhccc-cC-CcEEEEEEccChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCch
Q 023016 91 ----------NFLPLSVPINQD-TLNLLKDD-KR-KIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA 155 (288)
Q Consensus 91 ----------nslPLV~e~n~e-t~~~l~~~-~~-~~~l~~lf~~~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~ 155 (288)
.+.|.+.++... ++..+... .. -..+++++-... ..--+...+..+ .+++ +..+ .|...
T Consensus 153 la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~~-s~lg~~~~l~~l--~~~~v~vr~~-~d~q~-- 226 (606)
T KOG1731|consen 153 LAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETEP-SDLGWANLLNDL--PSKQVGVRAR-LDTQN-- 226 (606)
T ss_pred HHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecCC-cccHHHHHHhhc--cCCCcceEEE-ecchh--
Confidence 166777777654 34443221 11 225677763222 111222222221 1344 3333 33332
Q ss_pred hHHhhcCCCCCCCCCeEEEEeC-Cceeecc
Q 023016 156 DFADTFEANKKSKLPKMVVWDG-NENYLTV 184 (288)
Q Consensus 156 ~~le~fGL~k~~~lPai~I~d~-~~KY~~~ 184 (288)
.-.+|+ +..+.|..++..+ ..++..+
T Consensus 227 --~~~~~l-~~~~~~~~llfrnG~~q~l~~ 253 (606)
T KOG1731|consen 227 --FPLFGL-KPDNFPLALLFRNGEQQPLWP 253 (606)
T ss_pred --cccccc-CCCCchhhhhhcCCccccccc
Confidence 233456 5567787776663 4444433
No 187
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.23 E-value=1.1e+02 Score=25.88 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=31.0
Q ss_pred hhHHhhcCCCCCCCCCeEEEEe-CCc-eeeccCCCCCCCCCCCHHHHHHHHHHHhc
Q 023016 155 ADFADTFEANKKSKLPKMVVWD-GNE-NYLTVIGSESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 155 ~~~le~fGL~k~~~lPai~I~d-~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
......||+ ..+|..++.+ +++ .|...+ ..+.+++.++++.+++
T Consensus 127 ~~~~~~~~v---~~~P~~~~id~~G~i~~~~~G-------~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 127 GKLGLDLGV---YGAPETFLVDGNGVILYRHAG-------PLNNEVWTEGFLPAME 172 (173)
T ss_pred CchHHhcCC---eeCCeEEEEcCCceEEEEEec-------cCCHHHHHHHHHHHhh
Confidence 455667777 4589877777 443 565543 4789999999998873
No 188
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=40.76 E-value=56 Score=23.88 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=35.0
Q ss_pred hhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCC-CCHHHHHHHHH
Q 023016 22 NLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIK 89 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~-f~~~~L~~FI~ 89 (288)
.+.|.+..+.....--..+ .+-.+.+.+.+|++.+.|++++ +++ ..+.|. -+.+.|+++++
T Consensus 15 ~~~~~~~~~~~e~~~~~~~--~~v~~~~~a~~~~v~~vPti~i----~G~-~~~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 15 MTEKNVKKAVEELGIDAEF--EKVTDMNEILEAGVTATPGVAV----DGE-LVIMGKIPSKEEIKEILK 76 (76)
T ss_pred HHHHHHHHHHHHcCCCeEE--EEeCCHHHHHHcCCCcCCEEEE----CCE-EEEEeccCCHHHHHHHhC
Confidence 3445555555443222222 2222344577899999999999 333 347774 35578888763
No 189
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=39.73 E-value=87 Score=24.41 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=48.4
Q ss_pred hhhchhhH-H-HHHHhhc--ccchhHHhhhcceeeEeeecc--ccHHHHhHcCCCCCCeEEEEccCCCC-cccccCCCCH
Q 023016 9 DLEKQNCL-S-VILRNLL--PLMSPFLIQMRKFLTLLKMLD--FSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDE 81 (288)
Q Consensus 9 ~~~~~~~~-~-~~~~~~~--~~~~~~~~~~~k~~~v~~~~~--~seel~~~y~~~~~PsIvlfk~~dee-~~~f~g~f~~ 81 (288)
.+...+|. + ...|+.+ |.|..++.. ++..+..-.+ -..+++..|++.+.|+++++.+.+++ .....|..+.
T Consensus 23 ~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~ 100 (114)
T cd02958 23 YLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITP 100 (114)
T ss_pred EEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCH
Confidence 34445552 2 2224444 566666643 5655554332 12577888999999999999874333 3446788787
Q ss_pred HHHHHHHHH
Q 023016 82 EFLEEFIKQ 90 (288)
Q Consensus 82 ~~L~~FI~~ 90 (288)
+.+..-++.
T Consensus 101 ~~f~~~L~~ 109 (114)
T cd02958 101 EDLLSQLIE 109 (114)
T ss_pred HHHHHHHHH
Confidence 766655544
No 190
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=39.71 E-value=43 Score=26.03 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=27.6
Q ss_pred cccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHH
Q 023016 45 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 85 (288)
Q Consensus 45 ~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~ 85 (288)
+-..+++..|++.+.|+++++.+.. -...+.|-.+.+.|.
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~ 119 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLR 119 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHH
Confidence 3345788889999999999998532 333456666766664
No 191
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=38.91 E-value=1.9e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=14.0
Q ss_pred HHhhcCCCCCCCCCeEEEEe-CC
Q 023016 157 FADTFEANKKSKLPKMVVWD-GN 178 (288)
Q Consensus 157 ~le~fGL~k~~~lPai~I~d-~~ 178 (288)
+.+.||+ ..+|++++.+ ++
T Consensus 91 ~~~~~~v---~~~P~~~lid~~G 110 (131)
T cd03009 91 LNRTFKI---EGIPTLIILDADG 110 (131)
T ss_pred HHHHcCC---CCCCEEEEECCCC
Confidence 4566777 4689999998 44
No 192
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.81 E-value=66 Score=28.33 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHhHcCCCCCCeEEEEccCCCC-----cccccC-CCCHHHHHHHHHHc
Q 023016 48 EDTMVLYDFDKVPALVALQPSYNE-----HNIFYG-PFDEEFLEEFIKQN 91 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~dee-----~~~f~g-~f~~~~L~~FI~~n 91 (288)
++....|++...|++++||+...- ...+.| +++.+.|+.++...
T Consensus 142 d~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 142 TQCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred HHhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 344678999999999999953211 111223 58889999888754
No 193
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=37.36 E-value=86 Score=32.21 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=35.1
Q ss_pred cccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHcC
Q 023016 45 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 92 (288)
Q Consensus 45 ~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~ns 92 (288)
|-..++...|++...|+.+++-+...-...+.|..+.+.|..||+..+
T Consensus 126 D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 126 DNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred cccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 445678888999999999877543222234678889999999999543
No 194
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=36.25 E-value=2.5e+02 Score=23.32 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred HhhcCCCCCCCCCeEEEEe-CCc-eeeccCCCCCC---CCCCCHHHHHHHHHHHhcCcccc
Q 023016 158 ADTFEANKKSKLPKMVVWD-GNE-NYLTVIGSESI---DEEDQGSQISRFLEGYREGRTEQ 213 (288)
Q Consensus 158 le~fGL~k~~~lPai~I~d-~~~-KY~~~~~~~~~---~~e~t~e~I~~Fl~~fl~Gklkp 213 (288)
...||+ ...|.++|.| ++. .|.-.- .+.. ....+.+.+.+-++..+.|+-.+
T Consensus 102 ~~~~~v---~~~P~~~lid~~G~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 102 AKAYGA---ACTPDFFLFDPDGKLVYRGRI-DDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHcCC---CcCCcEEEECCCCeEEEeecc-cCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 445555 3569999998 443 443110 0000 12357788999999999987544
No 195
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=36.12 E-value=3.4e+02 Score=30.35 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=51.2
Q ss_pred CcEEEEEEccC-hhhHHHHHHHHHHHHHhcCC--cEEEEEe-----CcC----------------------chhHHhhcC
Q 023016 113 KIVLAIVEDET-EEKSQKLVTTLKAAASANRE--LVFCYVG-----IKQ----------------------FADFADTFE 162 (288)
Q Consensus 113 ~~~l~~lf~~~-~e~~e~~~~~l~~vAk~~rg--l~Fv~VD-----~~~----------------------~~~~le~fG 162 (288)
+.++++-|..+ =..-......|++++++|++ +.++.+. .++ ...+...|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 34444444322 22344667788888889877 7777663 211 112344566
Q ss_pred CCCCCCCCeEEEEe-CCc-eeeccCCCCCCCCCCCHHHHHHHHHHHhc
Q 023016 163 ANKKSKLPKMVVWD-GNE-NYLTVIGSESIDEEDQGSQISRFLEGYRE 208 (288)
Q Consensus 163 L~k~~~lPai~I~d-~~~-KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~ 208 (288)
+ ..+|.+++.+ +++ .+.+.+ +...+.+.++++..+.
T Consensus 500 V---~~iPt~ilid~~G~iv~~~~G-------~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 500 V---SSWPTFAVVSPNGKLIAQLSG-------EGHRKDLDDLVEAALQ 537 (1057)
T ss_pred C---CccceEEEECCCCeEEEEEec-------ccCHHHHHHHHHHHHH
Confidence 6 4689999998 443 333333 4677888888887653
No 196
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=35.96 E-value=40 Score=27.26 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHhhcccchhHHhhhcceeeEe-eeccccHHHHhHcCCCCCCeEEEEcc
Q 023016 16 LSVILRNLLPLMSPFLIQMRKFLTLL-KMLDFSEDTMVLYDFDKVPALVALQP 67 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~k~~~v~-~~~~~seel~~~y~~~~~PsIvlfk~ 67 (288)
..|||-.|+-. +.....-+ ++...+.++...|++.+.|++++||.
T Consensus 46 vaVILPEL~~a-------f~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 46 VAVILPELVKA-------FPGRFRGAVVARAAERALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp HHHHHHHHHCT-------STTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEET
T ss_pred ceeEcHHHHHh-------hhCccceEEECchhHHHHHHHhCCccCCeEEEEEC
Confidence 34666554443 34443333 35678899999999999999999994
No 197
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=34.44 E-value=1.9e+02 Score=21.25 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=23.1
Q ss_pred EEEEEEc-cChhhHHHHHHHHHHHHHhcC--C-cEEEEEeCc
Q 023016 115 VLAIVED-ETEEKSQKLVTTLKAAASANR--E-LVFCYVGIK 152 (288)
Q Consensus 115 ~l~~lf~-~~~e~~e~~~~~l~~vAk~~r--g-l~Fv~VD~~ 152 (288)
++++.|. ..-+........+.++.++++ + +.|++|..+
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 3344443 333446678888888888888 3 666666554
No 198
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=33.55 E-value=2.8e+02 Score=23.04 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHH
Q 023016 127 SQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 206 (288)
Q Consensus 127 ~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~f 206 (288)
..+-.+.|+++|+.+..- +.+.- +.++ +-| |++..-+..+.++ ..+...|..|++.|
T Consensus 61 ~~~~v~~L~~l~~~~~~~--~visP--------~~~~----~~p-ialtaWg~~l~~~--------~~d~~~i~~Fi~~~ 117 (130)
T PF11303_consen 61 PPDQVAKLKALAKSCLPY--VVISP--------YPGL----DRP-IALTAWGRQLKLD--------SADDPRIKQFIRKY 117 (130)
T ss_pred CHHHHHHHHHHHhccCCc--EEEec--------CCCC----CCC-EEEeecCCEeecC--------cCCHHHHHHHHHHH
Confidence 356788899999987651 11111 2334 223 3333334445553 47899999999999
Q ss_pred hcCcccc
Q 023016 207 REGRTEQ 213 (288)
Q Consensus 207 l~Gklkp 213 (288)
..|--.|
T Consensus 118 ~~~p~~p 124 (130)
T PF11303_consen 118 LQGPQAP 124 (130)
T ss_pred hcCCCCC
Confidence 8886544
No 199
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=33.54 E-value=1.4e+02 Score=21.98 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred eeeEeeeccccHHHHhHcCCCCCCeEEEEccCC-CCcccccCCCCHHHHHHHHH
Q 023016 37 FLTLLKMLDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFYGPFDEEFLEEFIK 89 (288)
Q Consensus 37 ~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~d-ee~~~f~g~f~~~~L~~FI~ 89 (288)
+...-+-++.++++..+|+.+ .|.+.+=.... .......+.++.+.|.+||+
T Consensus 29 ~~l~~vDI~~d~~l~~~Y~~~-IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 29 FELEEVDIDEDPELFEKYGYR-IPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp CEEEEEETTTTHHHHHHSCTS-TSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred ceEEEEECCCCHHHHHHhcCC-CCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 445556667778999999986 68654422100 01334567899999999985
No 200
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.28 E-value=1.4e+02 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=20.4
Q ss_pred HhhcccchhHHhhhc---ceeeEeeeccccHHH
Q 023016 21 RNLLPLMSPFLIQMR---KFLTLLKMLDFSEDT 50 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~---k~~~v~~~~~~seel 50 (288)
+..+|.+..+....+ ++..|+|..+-+.+-
T Consensus 17 ~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~ 49 (95)
T PF13905_consen 17 KKELPKLKELYKKYKKKDDVEFVFVSLDEDEEE 49 (95)
T ss_dssp HHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHH
Confidence 456677777777776 888888888766333
No 201
>smart00594 UAS UAS domain.
Probab=32.25 E-value=2.6e+02 Score=22.22 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=33.6
Q ss_pred cEEEEEeCcC--chhHHhhcCCCCCCCCCeEEEEe-CC-c-eeeccCCCCCCCCCCCHHHHHHHH
Q 023016 144 LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWD-GN-E-NYLTVIGSESIDEEDQGSQISRFL 203 (288)
Q Consensus 144 l~Fv~VD~~~--~~~~le~fGL~k~~~lPai~I~d-~~-~-KY~~~~~~~~~~~e~t~e~I~~Fl 203 (288)
+.+..+|... ..++++.++. ..+|.+++.+ .+ . .+.... .+....+++++.+++
T Consensus 63 fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~~g~~~~~~~~---~~~G~~~~~~l~~~l 121 (122)
T smart00594 63 FIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPRTGQRVIEWVG---VVEGEISPEELMTFL 121 (122)
T ss_pred EEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecCCCceeEEEec---cccCCCCHHHHHHhh
Confidence 6666667653 3356788888 5799999999 32 2 232211 123367888888776
No 202
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=32.04 E-value=87 Score=21.63 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=20.2
Q ss_pred ceeeEeeeccccHHHHhHcCCCCCCeEEE
Q 023016 36 KFLTLLKMLDFSEDTMVLYDFDKVPALVA 64 (288)
Q Consensus 36 k~~~v~~~~~~seel~~~y~~~~~PsIvl 64 (288)
++...-+-.+.+.+++..|++...|++++
T Consensus 30 ~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 30 NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 34333333455578999999999999865
No 203
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=31.23 E-value=2.7e+02 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.0
Q ss_pred HhhcCCCCCCCCCeEEEEe
Q 023016 158 ADTFEANKKSKLPKMVVWD 176 (288)
Q Consensus 158 le~fGL~k~~~lPai~I~d 176 (288)
.+.||+ ..+|.+++.+
T Consensus 92 ~~~~~v---~~iPt~~lid 107 (132)
T cd02964 92 EKQFKV---EGIPTLVVLK 107 (132)
T ss_pred HHHcCC---CCCCEEEEEC
Confidence 345777 4689999988
No 204
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=30.48 E-value=1.2e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=26.7
Q ss_pred ceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHH
Q 023016 36 KFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEE 82 (288)
Q Consensus 36 k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~ 82 (288)
++...-+-.+-..++..+|++.+.|++++ + ....+.|..+.+
T Consensus 43 ~i~~~~vd~~~~~e~a~~~~V~~vPt~vi----d-G~~~~~G~~~~~ 84 (89)
T cd03026 43 NIEHEMIDGALFQDEVEERGIMSVPAIFL----N-GELFGFGRMTLE 84 (89)
T ss_pred CceEEEEEhHhCHHHHHHcCCccCCEEEE----C-CEEEEeCCCCHH
Confidence 44433334445578999999999999974 2 344566744433
No 205
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=30.46 E-value=14 Score=29.82 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.2
Q ss_pred eccccHHHHhHcCCCCCCeEEEEcc
Q 023016 43 MLDFSEDTMVLYDFDKVPALVALQP 67 (288)
Q Consensus 43 ~~~~seel~~~y~~~~~PsIvlfk~ 67 (288)
....+..+..+|+++..|++|+-+.
T Consensus 56 ~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 56 GVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ceeEChhHHhhCCceEcCEEEEEcC
Confidence 4445688999999999999999886
No 206
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=29.55 E-value=1.3e+02 Score=21.98 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=17.8
Q ss_pred HhhcccchhHHhhh--cceeeEeeecccc
Q 023016 21 RNLLPLMSPFLIQM--RKFLTLLKMLDFS 47 (288)
Q Consensus 21 ~~~~~~~~~~~~~~--~k~~~v~~~~~~s 47 (288)
+..+|.+..+.... .++..+++..+..
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 35 RAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred HHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 44567777776666 5677777766663
No 207
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=1.3e+02 Score=23.84 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=40.8
Q ss_pred HhhcccchhHHhhhcceeeEeeeccccHHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
|.+-|.+-.+-..-....-+-+--|-..+++..+++...|+++.||+.+ +...+-|. +.+.|++.|..+
T Consensus 37 k~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 37 KAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGA-NKAELEKKIAKH 105 (106)
T ss_pred hhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecC-CHHHHHHHHHhc
Confidence 3445555444444444222222222268999999999999999999643 22233443 455777777654
No 208
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=28.70 E-value=84 Score=26.59 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=26.8
Q ss_pred HHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 49 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 49 el~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
++...|++.+.|+.+++.+...-...+.|..+.+.|+++|...
T Consensus 128 ~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 128 KLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred chHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 4455667767787666653221122346778888888888753
No 209
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=27.32 E-value=1.2e+02 Score=27.49 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHcCCCCeeecCcc-chhhhccc-cCCcEEEEEEccChhh-HHHHHHHHHHHHHhcCCcEEEEEeCcCchhHHhhc
Q 023016 85 EEFIKQNFLPLSVPINQD-TLNLLKDD-KRKIVLAIVEDETEEK-SQKLVTTLKAAASANRELVFCYVGIKQFADFADTF 161 (288)
Q Consensus 85 ~~FI~~nslPLV~e~n~e-t~~~l~~~-~~~~~l~~lf~~~~e~-~e~~~~~l~~vAk~~rgl~Fv~VD~~~~~~~le~f 161 (288)
+.|++.- ..-+.++..+ -+-. .. .+.. ++.-|+..+-. =.-+=+-|+.+|+.|-+..|+-|++..-+=+..-+
T Consensus 58 ~~~~~~G-hG~y~ev~~Ekdf~~--~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL 133 (211)
T KOG1672|consen 58 KEWLSKG-HGEYEEVASEKDFFE--EVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKL 133 (211)
T ss_pred HHHHHcC-CceEEEeccHHHHHH--HhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeee
Confidence 4566543 4455666532 2222 22 2233 33334432211 22344578899999999999999998665557888
Q ss_pred CCCCCCCCCeEEEEeCCc--eeeccCCCCCC--CCCCCHHHHHHHH
Q 023016 162 EANKKSKLPKMVVWDGNE--NYLTVIGSESI--DEEDQGSQISRFL 203 (288)
Q Consensus 162 GL~k~~~lPai~I~d~~~--KY~~~~~~~~~--~~e~t~e~I~~Fl 203 (288)
++ .-+|+++++.++. -|.. |-+.+ .++|+.+.++.=+
T Consensus 134 ~I---kVLP~v~l~k~g~~~D~iV--GF~dLGnkDdF~te~LE~rL 174 (211)
T KOG1672|consen 134 NI---KVLPTVALFKNGKTVDYVV--GFTDLGNKDDFTTETLENRL 174 (211)
T ss_pred ee---eEeeeEEEEEcCEEEEEEe--eHhhcCCCCcCcHHHHHHHH
Confidence 88 4689999888432 2211 11111 2478888887544
No 210
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=27.18 E-value=1.6e+02 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=14.0
Q ss_pred HHHhHcCCCCCCeEEEEcc
Q 023016 49 DTMVLYDFDKVPALVALQP 67 (288)
Q Consensus 49 el~~~y~~~~~PsIvlfk~ 67 (288)
.++..|++...|+++++.+
T Consensus 90 ~~~~~~~v~~~P~~~lid~ 108 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDA 108 (131)
T ss_pred HHHHHcCCCCCCEEEEECC
Confidence 4566778877888888864
No 211
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=26.98 E-value=2e+02 Score=24.28 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhhcccchhHHhhhcceeeEeeecccc------------HHHHhHc----CCCCCCeEEEEccCCCC-cccccCCCCHHH
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDFS------------EDTMVLY----DFDKVPALVALQPSYNE-HNIFYGPFDEEF 83 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~s------------eel~~~y----~~~~~PsIvlfk~~dee-~~~f~g~f~~~~ 83 (288)
|..+|.+..+.-.. ++.++++..+-. .+....+ ++...|+.+++.+.... .....|..+.+.
T Consensus 66 r~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~ 144 (153)
T TIGR02738 66 HQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAE 144 (153)
T ss_pred HHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHH
Q ss_pred HHHHHHH
Q 023016 84 LEEFIKQ 90 (288)
Q Consensus 84 L~~FI~~ 90 (288)
|++.|..
T Consensus 145 l~~~I~~ 151 (153)
T TIGR02738 145 LANRMDE 151 (153)
T ss_pred HHHHHHH
No 212
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=25.82 E-value=2.5e+02 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCC-cEEEEE-eCc--CchhHHhhcCC
Q 023016 128 QKLVTTLKAAASANRE-LVFCYV-GIK--QFADFADTFEA 163 (288)
Q Consensus 128 e~~~~~l~~vAk~~rg-l~Fv~V-D~~--~~~~~le~fGL 163 (288)
......++++++++++ +.++.+ |.+ +...+++.+++
T Consensus 37 ~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 37 KKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGL 76 (114)
T ss_pred HhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCC
Confidence 3445566777777765 444444 221 33345555555
No 213
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=24.65 E-value=1.3e+02 Score=24.58 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=31.2
Q ss_pred hhcccchhHHhhhcc-eeeEeeeccccHHHHhHcCCCCCCeEEEEccC
Q 023016 22 NLLPLMSPFLIQMRK-FLTLLKMLDFSEDTMVLYDFDKVPALVALQPS 68 (288)
Q Consensus 22 ~~~~~~~~~~~~~~k-~~~v~~~~~~seel~~~y~~~~~PsIvlfk~~ 68 (288)
.+=|.+..+-...++ ....-|-.|-.+++.+.|++..-|+.++|+..
T Consensus 31 ~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 31 QLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 344555555555555 33343455666889999999888998898853
No 214
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=23.76 E-value=2.5e+02 Score=21.04 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=36.9
Q ss_pred ccChhhHHHHHHHHHHHHHhcCC--cEEEEEeCcCchhHHhhcCCCCCCCCCeEE
Q 023016 121 DETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 173 (288)
Q Consensus 121 ~~~~e~~e~~~~~l~~vAk~~rg--l~Fv~VD~~~~~~~le~fGL~k~~~lPai~ 173 (288)
...+..+....+.++.+-+.+-+ +..=.+|..+++..++.+.+ --.|+++
T Consensus 9 ~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLv 60 (72)
T cd02978 9 AGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI---VATPTLV 60 (72)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE---EEechhh
Confidence 33434567777788887777655 88889999999999998887 3456654
No 215
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=23.64 E-value=2.4e+02 Score=19.00 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCcEEEEEeCcCchh----HHhhcCCCCCCCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHH
Q 023016 142 RELVFCYVGIKQFAD----FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 204 (288)
Q Consensus 142 rgl~Fv~VD~~~~~~----~le~fGL~k~~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~ 204 (288)
+++.|..+|.++.+. +.+.+|. ..+|.+.+. +.. +.+ .+++.|.+|++
T Consensus 23 ~~i~~~~vdi~~~~~~~~~~~~~~~~---~~vP~~~~~--~~~--~~g--------~~~~~i~~~i~ 74 (74)
T TIGR02196 23 KGIAFEEIDVEKDSAAREEVLKVLGQ---RGVPVIVIG--HKI--IVG--------FDPEKLDQLLE 74 (74)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHhCC---CcccEEEEC--CEE--Eee--------CCHHHHHHHhC
Confidence 358888888876543 3345666 578988763 322 222 57888988874
No 216
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=23.15 E-value=1.1e+02 Score=20.27 Aligned_cols=19 Identities=11% Similarity=0.431 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 023016 233 SVYIIVFMVAMLMLLRTLG 251 (288)
Q Consensus 233 ~~~i~~~~v~~~~~~~~~~ 251 (288)
++..++|+|.+|..+..|+
T Consensus 13 ~l~~llflv~imliif~f~ 31 (43)
T PF11395_consen 13 FLSFLLFLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556788888888887776
No 217
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=23.00 E-value=3.6e+02 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=14.7
Q ss_pred hHHhhcCCCCCCCCCeEEEEe-CCc-eeecc
Q 023016 156 DFADTFEANKKSKLPKMVVWD-GNE-NYLTV 184 (288)
Q Consensus 156 ~~le~fGL~k~~~lPai~I~d-~~~-KY~~~ 184 (288)
.++..+|+ ..+|..++.+ ++. .+...
T Consensus 91 ~~~~~~~v---~~~P~~~~ld~~G~v~~~~~ 118 (127)
T cd03010 91 RVGIDLGV---YGVPETFLIDGDGIIRYKHV 118 (127)
T ss_pred hHHHhcCC---CCCCeEEEECCCceEEEEEe
Confidence 34555666 4578777777 332 44443
No 218
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.39 E-value=1.5e+02 Score=30.80 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHhHcCCCCCCeEEEEccCCCCcccccCCCCHHHHHHHHHHc
Q 023016 48 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 91 (288)
Q Consensus 48 eel~~~y~~~~~PsIvlfk~~dee~~~f~g~f~~~~L~~FI~~n 91 (288)
.+++++|+.-+.|++++|.+..++.....|-.+++.+.+|++..
T Consensus 524 ~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 524 TALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 67899999999999999997666666678888999999999875
No 219
>PF13728 TraF: F plasmid transfer operon protein
Probab=22.36 E-value=2.2e+02 Score=25.42 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=47.7
Q ss_pred hhHHHHHHhhcccchhHHhhhcceeeEeeecc-----------ccHHHHhHcCCCCCCeEEEEccCCCCccc-ccCCCCH
Q 023016 14 NCLSVILRNLLPLMSPFLIQMRKFLTLLKMLD-----------FSEDTMVLYDFDKVPALVALQPSYNEHNI-FYGPFDE 81 (288)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~k~~~v~~~~~-----------~seel~~~y~~~~~PsIvlfk~~dee~~~-f~g~f~~ 81 (288)
+|- ......|.+..|-- ..++.+.+|-.| .+..+.+.+++...|+++|.++...+... =.|-.+.
T Consensus 131 ~C~--~C~~~~pil~~~~~-~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~ 207 (215)
T PF13728_consen 131 DCP--YCQQQAPILQQFAD-KYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSL 207 (215)
T ss_pred CCc--hhHHHHHHHHHHHH-HhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCH
Confidence 454 34556676666544 447888877776 34889999999999999999975533322 2566677
Q ss_pred HHHHH
Q 023016 82 EFLEE 86 (288)
Q Consensus 82 ~~L~~ 86 (288)
++|.+
T Consensus 208 ~~L~~ 212 (215)
T PF13728_consen 208 DELED 212 (215)
T ss_pred HHHHH
Confidence 77654
No 220
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=21.96 E-value=1.5e+02 Score=25.49 Aligned_cols=68 Identities=9% Similarity=-0.056 Sum_probs=37.4
Q ss_pred HhhcccchhHHhhhcceeeEeeeccccH-----------------------HHHhHcCCCCCCeEEEEccCCCCcccccC
Q 023016 21 RNLLPLMSPFLIQMRKFLTLLKMLDFSE-----------------------DTMVLYDFDKVPALVALQPSYNEHNIFYG 77 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~k~~~v~~~~~~se-----------------------el~~~y~~~~~PsIvlfk~~dee~~~f~g 77 (288)
|..+|.+..|. .+.+..+++..+-+. ++...|++...|+..++.+...-...+.|
T Consensus 84 ~~e~p~l~~l~--~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 84 RAEHQYLNQLS--AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHHHHHHHHHH--HcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 55567766664 245666776643332 12334566667766666432111223457
Q ss_pred CCCHHHHHHHHHH
Q 023016 78 PFDEEFLEEFIKQ 90 (288)
Q Consensus 78 ~f~~~~L~~FI~~ 90 (288)
+.+.+.|+++|+.
T Consensus 162 ~~~~~~l~~~i~~ 174 (185)
T PRK15412 162 DLNPRVWESEIKP 174 (185)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777777764
No 221
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=20.71 E-value=1.5e+02 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=34.9
Q ss_pred eeecCccc-hhhhccccCCcEEEEEEcc-ChhhHHHHHHHHHHHHHhcCC-cEEEEE
Q 023016 96 SVPINQDT-LNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYV 149 (288)
Q Consensus 96 V~e~n~et-~~~l~~~~~~~~l~~lf~~-~~e~~e~~~~~l~~vAk~~rg-l~Fv~V 149 (288)
|+.++..+ ...+.+++.+.|+++-|-+ +=+-+..-...|+++|+.|++ ..|+.|
T Consensus 84 vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 84 VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 45555555 3334466666677766654 335577788889999999998 445444
No 222
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=20.66 E-value=6.3e+02 Score=22.79 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=58.0
Q ss_pred CccchhhhccccCCcEEEEEEcc-----ChhhHHHHHHHHHHHHHhcCC-cEEEEEeCcCchh----HHhhcCCCCC---
Q 023016 100 NQDTLNLLKDDKRKIVLAIVEDE-----TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD----FADTFEANKK--- 166 (288)
Q Consensus 100 n~et~~~l~~~~~~~~l~~lf~~-----~~e~~e~~~~~l~~vAk~~rg-l~Fv~VD~~~~~~----~le~fGL~k~--- 166 (288)
++.|...|+-.+.++-+.+++.. .......+...|++-++..+| +.+-++|.+..+. .++.+|+ ..
T Consensus 13 S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi-~~~~~ 91 (271)
T PF09822_consen 13 SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI-QPVQI 91 (271)
T ss_pred CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC-Cccce
Confidence 33444444444555544444433 123356777788888888887 9999999854433 3555887 33
Q ss_pred -----------CCCCeEEEEeCCceeeccCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 023016 167 -----------SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 210 (288)
Q Consensus 167 -----------~~lPai~I~d~~~KY~~~~~~~~~~~e~t~e~I~~Fl~~fl~Gk 210 (288)
...+.+++..+++....+... .....--..+|.+-+.....++
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~-~~~~~~~E~~lt~aI~~v~~~~ 145 (271)
T PF09822_consen 92 EIVDNGKASIVTVYGGIVVEYGDREEVIPFLD-SMSEFNLEYELTSAIRRVTSDE 145 (271)
T ss_pred eecccccccceeecCeEEEEECCeEEEeeccc-ccccccHHHHHHHHHHHHhccc
Confidence 123555554343322222100 0001112457777787777774
Done!