Query 023017
Match_columns 288
No_of_seqs 174 out of 1346
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05980 enoyl-CoA hydratase; 100.0 4.4E-55 9.5E-60 387.2 27.2 253 34-286 3-260 (260)
2 PRK08150 enoyl-CoA hydratase; 100.0 3.9E-54 8.4E-59 379.7 26.8 248 34-287 2-253 (255)
3 PRK06142 enoyl-CoA hydratase; 100.0 3.8E-54 8.3E-59 383.5 26.4 255 33-287 5-271 (272)
4 PRK09076 enoyl-CoA hydratase; 100.0 6.5E-54 1.4E-58 379.1 27.4 249 33-286 2-255 (258)
5 PRK06127 enoyl-CoA hydratase; 100.0 8.1E-54 1.8E-58 380.6 27.6 252 33-286 10-266 (269)
6 TIGR03210 badI 2-ketocyclohexa 100.0 4.7E-54 1E-58 379.5 25.7 251 33-288 1-256 (256)
7 PRK09245 enoyl-CoA hydratase; 100.0 6.5E-54 1.4E-58 380.9 26.5 255 32-286 1-263 (266)
8 PRK05862 enoyl-CoA hydratase; 100.0 5.8E-54 1.3E-58 379.3 26.0 248 33-286 3-254 (257)
9 PRK07657 enoyl-CoA hydratase; 100.0 8E-54 1.7E-58 379.1 26.8 251 32-286 1-257 (260)
10 PRK08140 enoyl-CoA hydratase; 100.0 1.2E-53 2.5E-58 378.5 26.7 253 33-286 3-259 (262)
11 PRK07327 enoyl-CoA hydratase; 100.0 1.2E-53 2.7E-58 379.2 26.9 253 32-286 9-265 (268)
12 PRK08139 enoyl-CoA hydratase; 100.0 1.9E-53 4.1E-58 377.6 27.7 250 33-286 10-263 (266)
13 PRK07511 enoyl-CoA hydratase; 100.0 2E-53 4.3E-58 376.6 27.3 253 34-287 3-259 (260)
14 PRK08258 enoyl-CoA hydratase; 100.0 2.2E-53 4.8E-58 379.3 27.6 252 35-286 18-274 (277)
15 PRK09674 enoyl-CoA hydratase-i 100.0 1.3E-53 2.9E-58 376.5 25.9 247 34-286 2-252 (255)
16 PRK08138 enoyl-CoA hydratase; 100.0 2.1E-53 4.6E-58 376.5 26.8 249 32-286 5-258 (261)
17 TIGR02280 PaaB1 phenylacetate 100.0 1.8E-53 3.9E-58 376.0 26.2 249 36-286 1-253 (256)
18 PRK06563 enoyl-CoA hydratase; 100.0 1.1E-53 2.4E-58 377.1 24.9 247 36-286 1-252 (255)
19 PLN02664 enoyl-CoA hydratase/d 100.0 1.8E-53 4E-58 379.5 26.1 251 36-286 10-272 (275)
20 PRK05809 3-hydroxybutyryl-CoA 100.0 2.5E-53 5.3E-58 376.0 26.6 250 33-286 3-257 (260)
21 PRK07658 enoyl-CoA hydratase; 100.0 2E-53 4.3E-58 376.0 26.0 248 35-286 3-254 (257)
22 PRK07799 enoyl-CoA hydratase; 100.0 2.8E-53 6E-58 376.2 26.9 251 33-286 4-260 (263)
23 PRK09120 p-hydroxycinnamoyl Co 100.0 2.1E-53 4.5E-58 378.9 26.1 254 33-286 7-267 (275)
24 PRK05981 enoyl-CoA hydratase; 100.0 2.3E-53 5.1E-58 377.3 25.9 255 32-286 2-263 (266)
25 KOG1680 Enoyl-CoA hydratase [L 100.0 2.3E-54 4.9E-59 369.5 18.5 247 35-287 38-288 (290)
26 PRK05995 enoyl-CoA hydratase; 100.0 2.7E-53 5.9E-58 376.1 26.1 252 33-286 3-259 (262)
27 TIGR01929 menB naphthoate synt 100.0 2.2E-53 4.7E-58 375.9 25.2 249 34-286 2-256 (259)
28 PLN02600 enoyl-CoA hydratase 100.0 2.9E-53 6.2E-58 373.5 25.7 242 41-286 2-248 (251)
29 PRK08252 enoyl-CoA hydratase; 100.0 3.8E-53 8.3E-58 373.4 26.0 246 33-286 2-251 (254)
30 PRK07260 enoyl-CoA hydratase; 100.0 3.4E-53 7.4E-58 374.0 25.6 251 33-283 1-255 (255)
31 PRK06144 enoyl-CoA hydratase; 100.0 4.5E-53 9.7E-58 374.5 26.4 249 32-286 6-259 (262)
32 PRK05674 gamma-carboxygeranoyl 100.0 3.4E-53 7.4E-58 375.7 25.2 252 33-286 4-261 (265)
33 PRK07659 enoyl-CoA hydratase; 100.0 5E-53 1.1E-57 373.9 25.7 248 34-286 6-257 (260)
34 PRK07468 enoyl-CoA hydratase; 100.0 8E-53 1.7E-57 373.0 26.4 252 33-286 3-259 (262)
35 PRK08260 enoyl-CoA hydratase; 100.0 1.2E-52 2.5E-57 377.9 26.4 254 33-286 3-275 (296)
36 PRK06143 enoyl-CoA hydratase; 100.0 1.1E-52 2.3E-57 370.8 25.6 246 33-283 5-256 (256)
37 PRK06210 enoyl-CoA hydratase; 100.0 1E-52 2.3E-57 374.3 25.1 255 32-286 3-269 (272)
38 PRK06494 enoyl-CoA hydratase; 100.0 1.4E-52 3.1E-57 370.8 25.8 248 32-286 2-256 (259)
39 PLN02888 enoyl-CoA hydratase 100.0 2.6E-52 5.7E-57 369.9 25.9 247 32-285 7-260 (265)
40 PRK06688 enoyl-CoA hydratase; 100.0 2.2E-52 4.8E-57 369.8 25.3 249 33-286 4-256 (259)
41 PRK05864 enoyl-CoA hydratase; 100.0 2.4E-52 5.1E-57 372.5 25.6 255 32-286 7-272 (276)
42 PRK03580 carnitinyl-CoA dehydr 100.0 2.4E-52 5.3E-57 369.7 25.5 248 33-286 2-258 (261)
43 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-52 5.6E-57 371.6 25.4 251 32-286 11-266 (273)
44 PRK07509 enoyl-CoA hydratase; 100.0 3.4E-52 7.5E-57 369.1 25.9 252 32-286 1-260 (262)
45 PRK06495 enoyl-CoA hydratase; 100.0 3.7E-52 8E-57 367.7 25.6 249 32-286 2-254 (257)
46 PRK11423 methylmalonyl-CoA dec 100.0 5.7E-52 1.2E-56 367.1 25.3 248 33-286 3-258 (261)
47 PRK06023 enoyl-CoA hydratase; 100.0 6.6E-52 1.4E-56 364.9 23.9 242 34-281 3-251 (251)
48 PLN02921 naphthoate synthase 100.0 1.3E-51 2.9E-56 373.9 26.2 251 32-286 63-320 (327)
49 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.1E-51 4.6E-56 363.1 26.4 249 33-286 4-257 (257)
50 PRK08259 enoyl-CoA hydratase; 100.0 1.1E-51 2.3E-56 364.0 24.1 247 32-284 1-250 (254)
51 PRK07827 enoyl-CoA hydratase; 100.0 3.4E-51 7.3E-56 362.3 27.4 252 33-287 5-259 (260)
52 PRK05870 enoyl-CoA hydratase; 100.0 1E-51 2.3E-56 363.3 23.8 244 32-281 1-249 (249)
53 PRK06072 enoyl-CoA hydratase; 100.0 3.8E-51 8.2E-56 359.4 26.1 241 36-286 2-245 (248)
54 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.3E-51 7E-56 360.2 25.5 241 36-286 3-248 (251)
55 PRK07938 enoyl-CoA hydratase; 100.0 3.6E-51 7.8E-56 359.6 24.6 239 39-284 7-249 (249)
56 PF00378 ECH: Enoyl-CoA hydrat 100.0 1E-51 2.2E-56 362.8 20.6 241 37-281 1-245 (245)
57 PRK05617 3-hydroxyisobutyryl-C 100.0 2.5E-51 5.5E-56 375.1 23.9 253 35-287 4-324 (342)
58 PLN02157 3-hydroxyisobutyryl-C 100.0 8.1E-51 1.8E-55 376.0 27.2 254 33-286 36-293 (401)
59 PRK08321 naphthoate synthase; 100.0 7.7E-51 1.7E-55 366.6 25.4 254 33-286 22-295 (302)
60 PRK07854 enoyl-CoA hydratase; 100.0 1.3E-50 2.9E-55 354.8 25.5 235 36-286 2-240 (243)
61 PLN03214 probable enoyl-CoA hy 100.0 7.5E-51 1.6E-55 362.7 24.3 254 28-284 5-266 (278)
62 PRK12478 enoyl-CoA hydratase; 100.0 2.1E-51 4.6E-56 369.4 20.8 252 33-288 4-281 (298)
63 PRK07112 polyketide biosynthes 100.0 4.8E-50 1E-54 353.8 25.2 247 33-286 3-252 (255)
64 PLN02874 3-hydroxyisobutyryl-C 100.0 7.5E-50 1.6E-54 369.6 27.0 253 33-287 10-337 (379)
65 PRK06190 enoyl-CoA hydratase; 100.0 1.6E-49 3.4E-54 350.6 25.5 231 33-269 3-236 (258)
66 PRK07110 polyketide biosynthes 100.0 2E-49 4.4E-54 348.6 24.7 239 32-277 3-245 (249)
67 PLN02988 3-hydroxyisobutyryl-C 100.0 2.3E-48 4.9E-53 358.6 27.5 247 35-281 10-256 (381)
68 PRK05869 enoyl-CoA hydratase; 100.0 9.1E-49 2E-53 338.6 21.5 213 32-249 1-220 (222)
69 PLN02851 3-hydroxyisobutyryl-C 100.0 8.9E-48 1.9E-52 355.6 27.2 250 32-281 40-289 (407)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 9E-48 2E-52 367.3 24.4 251 33-287 255-542 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.1E-47 2.4E-52 367.7 24.1 253 32-288 258-547 (550)
72 PRK08788 enoyl-CoA hydratase; 100.0 1E-46 2.2E-51 336.1 26.2 243 35-279 18-274 (287)
73 PRK08272 enoyl-CoA hydratase; 100.0 8.7E-47 1.9E-51 340.7 23.0 216 32-250 8-246 (302)
74 PRK08290 enoyl-CoA hydratase; 100.0 1.9E-46 4.1E-51 336.0 22.6 224 33-258 3-247 (288)
75 PRK06213 enoyl-CoA hydratase; 100.0 4E-46 8.6E-51 324.0 19.8 209 33-249 2-213 (229)
76 KOG1679 Enoyl-CoA hydratase [L 100.0 2.2E-46 4.9E-51 308.2 16.3 250 33-286 26-288 (291)
77 PRK11730 fadB multifunctional 100.0 6.4E-45 1.4E-49 361.1 24.7 249 35-284 7-299 (715)
78 TIGR03200 dearomat_oah 6-oxocy 100.0 7E-44 1.5E-48 321.3 22.8 204 44-248 38-258 (360)
79 KOG1681 Enoyl-CoA isomerase [L 100.0 4.9E-45 1.1E-49 302.8 13.4 254 32-285 17-287 (292)
80 PLN02267 enoyl-CoA hydratase/i 100.0 1.4E-43 3E-48 309.5 20.5 210 36-248 2-219 (239)
81 PRK11154 fadJ multifunctional 100.0 4.5E-43 9.8E-48 347.8 25.1 246 33-281 4-293 (708)
82 COG0447 MenB Dihydroxynaphthoi 100.0 4.6E-44 9.9E-49 295.0 13.5 251 32-286 16-275 (282)
83 TIGR02440 FadJ fatty oxidation 100.0 2.7E-42 5.9E-47 341.6 23.5 239 39-280 6-287 (699)
84 KOG0016 Enoyl-CoA hydratase/is 100.0 6.3E-42 1.4E-46 290.3 19.2 250 32-281 5-262 (266)
85 KOG1682 Enoyl-CoA isomerase [L 100.0 1.6E-41 3.6E-46 277.5 18.7 269 11-287 13-285 (287)
86 KOG1684 Enoyl-CoA hydratase [L 100.0 9.3E-41 2E-45 294.1 22.2 255 26-280 30-286 (401)
87 TIGR02437 FadB fatty oxidation 100.0 8.1E-41 1.8E-45 331.2 23.7 192 35-227 7-200 (714)
88 cd06558 crotonase-like Crotona 100.0 6.4E-41 1.4E-45 284.1 19.2 190 36-227 1-191 (195)
89 TIGR03222 benzo_boxC benzoyl-C 100.0 5.5E-41 1.2E-45 320.7 20.8 207 28-235 5-231 (546)
90 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.3E-40 5E-45 328.7 22.0 182 33-217 12-198 (737)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.2E-39 2.7E-44 312.3 20.6 206 30-236 11-236 (550)
92 cd07014 S49_SppA Signal peptid 99.8 1.2E-20 2.6E-25 157.7 9.3 140 62-221 23-173 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 2.8E-20 6.1E-25 156.7 11.2 145 45-218 2-166 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 8.5E-17 1.8E-21 138.1 9.4 103 43-165 1-105 (211)
95 cd00394 Clp_protease_like Case 99.6 3.9E-15 8.6E-20 122.4 10.7 134 58-214 8-161 (161)
96 cd07022 S49_Sppa_36K_type Sign 99.6 1.2E-14 2.5E-19 125.1 11.7 97 51-168 14-111 (214)
97 TIGR00705 SppA_67K signal pept 99.6 1.5E-14 3.1E-19 141.1 12.6 171 40-233 306-524 (584)
98 cd07023 S49_Sppa_N_C Signal pe 99.5 3.1E-14 6.7E-19 122.0 10.4 101 44-166 2-102 (208)
99 cd07016 S14_ClpP_1 Caseinolyti 99.5 2.6E-14 5.7E-19 117.4 9.4 128 61-214 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.5 2.9E-13 6.2E-18 115.9 11.7 148 44-220 2-198 (207)
101 cd07021 Clp_protease_NfeD_like 99.4 2.1E-12 4.5E-17 107.7 11.1 140 45-217 2-171 (178)
102 cd07018 S49_SppA_67K_type Sign 99.4 2.9E-12 6.2E-17 110.9 9.5 90 58-168 26-115 (222)
103 cd07015 Clp_protease_NfeD Nodu 99.0 4.8E-09 1E-13 86.8 11.0 136 58-217 10-165 (172)
104 cd07013 S14_ClpP Caseinolytic 98.9 2.7E-08 5.9E-13 81.8 10.8 134 58-214 9-162 (162)
105 PRK10949 protease 4; Provision 98.9 3.3E-08 7.1E-13 97.1 13.1 166 41-232 325-541 (618)
106 PRK00277 clpP ATP-dependent Cl 98.8 4.2E-08 9.1E-13 83.5 10.6 139 56-217 38-196 (200)
107 KOG1683 Hydroxyacyl-CoA dehydr 98.8 4.3E-09 9.3E-14 94.8 3.5 168 43-217 66-240 (380)
108 PRK12553 ATP-dependent Clp pro 98.7 1.8E-07 4E-12 79.9 11.2 136 57-217 43-202 (207)
109 cd07017 S14_ClpP_2 Caseinolyti 98.6 1.5E-07 3.3E-12 78.1 8.9 132 58-214 18-171 (171)
110 PRK12319 acetyl-CoA carboxylas 98.6 5.4E-06 1.2E-10 72.9 18.3 139 55-218 76-215 (256)
111 PF00574 CLP_protease: Clp pro 98.6 2.7E-07 5.8E-12 77.4 8.6 135 58-217 25-181 (182)
112 PRK14512 ATP-dependent Clp pro 98.5 6.7E-07 1.4E-11 75.8 10.3 137 58-217 32-188 (197)
113 CHL00198 accA acetyl-CoA carbo 98.5 7.6E-06 1.6E-10 73.7 17.2 138 55-217 132-270 (322)
114 COG0616 SppA Periplasmic serin 98.5 1.4E-06 3.1E-11 79.2 12.0 140 63-229 82-271 (317)
115 TIGR00513 accA acetyl-CoA carb 98.5 1.5E-05 3.2E-10 71.8 17.7 136 56-217 130-267 (316)
116 CHL00028 clpP ATP-dependent Cl 98.5 2E-06 4.3E-11 73.0 11.4 137 58-218 39-197 (200)
117 TIGR00493 clpP ATP-dependent C 98.5 2.5E-06 5.5E-11 72.0 12.0 136 58-216 35-190 (191)
118 PLN03230 acetyl-coenzyme A car 98.4 1.7E-05 3.8E-10 73.3 17.4 137 56-217 200-337 (431)
119 PLN03229 acetyl-coenzyme A car 98.4 2.4E-05 5.2E-10 76.8 18.6 137 55-217 220-358 (762)
120 PRK11778 putative inner membra 98.4 1.3E-06 2.9E-11 79.2 8.8 155 41-220 89-289 (330)
121 PRK05724 acetyl-CoA carboxylas 98.3 1.6E-05 3.5E-10 71.7 13.5 139 55-217 129-267 (319)
122 PRK14514 ATP-dependent Clp pro 98.3 9.5E-06 2.1E-10 69.7 10.7 137 56-217 61-219 (221)
123 TIGR03134 malonate_gamma malon 98.3 0.00019 4.2E-09 62.4 18.7 156 41-220 30-192 (238)
124 TIGR03133 malonate_beta malona 98.3 0.0001 2.3E-09 65.3 17.2 140 54-219 71-219 (274)
125 PRK14513 ATP-dependent Clp pro 98.2 1.5E-05 3.2E-10 67.6 11.1 136 57-219 35-194 (201)
126 PRK12551 ATP-dependent Clp pro 98.2 1.5E-05 3.4E-10 67.4 10.8 139 57-218 33-191 (196)
127 PF01972 SDH_sah: Serine dehyd 98.1 2.5E-05 5.5E-10 68.3 10.5 100 55-180 69-168 (285)
128 PRK05654 acetyl-CoA carboxylas 98.1 9.9E-05 2.1E-09 66.2 14.1 156 41-227 119-276 (292)
129 PRK07189 malonate decarboxylas 98.1 6.5E-05 1.4E-09 67.3 12.2 140 54-219 80-228 (301)
130 TIGR00515 accD acetyl-CoA carb 98.0 0.00023 5E-09 63.6 14.9 156 41-227 118-275 (285)
131 PF01343 Peptidase_S49: Peptid 97.9 5.9E-06 1.3E-10 67.4 2.7 95 126-220 2-143 (154)
132 TIGR00705 SppA_67K signal pept 97.8 0.00016 3.4E-09 71.2 11.5 85 62-166 77-161 (584)
133 CHL00174 accD acetyl-CoA carbo 97.8 0.00073 1.6E-08 60.4 14.2 143 54-227 145-289 (296)
134 TIGR01117 mmdA methylmalonyl-C 97.7 0.0016 3.6E-08 63.0 15.2 158 47-226 319-490 (512)
135 PF01039 Carboxyl_trans: Carbo 97.6 0.0018 3.9E-08 62.6 15.2 129 54-219 69-207 (493)
136 COG1030 NfeD Membrane-bound se 97.6 0.0012 2.7E-08 61.5 13.2 148 40-217 24-188 (436)
137 COG0740 ClpP Protease subunit 97.6 0.00043 9.2E-09 58.3 8.7 135 58-219 36-194 (200)
138 PRK10949 protease 4; Provision 97.6 0.00054 1.2E-08 67.7 10.8 87 61-167 95-181 (618)
139 PRK12552 ATP-dependent Clp pro 97.5 0.0016 3.6E-08 55.9 11.7 144 57-218 48-215 (222)
140 TIGR01117 mmdA methylmalonyl-C 97.3 0.0039 8.6E-08 60.4 13.1 136 47-219 86-230 (512)
141 PLN02820 3-methylcrotonyl-CoA 97.2 0.013 2.8E-07 57.4 14.8 140 47-219 133-281 (569)
142 COG0777 AccD Acetyl-CoA carbox 97.0 0.006 1.3E-07 53.4 9.9 142 55-227 135-277 (294)
143 COG0825 AccA Acetyl-CoA carbox 96.9 0.00092 2E-08 58.9 4.0 91 117-217 175-266 (317)
144 PF01039 Carboxyl_trans: Carbo 96.1 0.047 1E-06 52.9 10.3 159 47-227 298-474 (493)
145 PLN02820 3-methylcrotonyl-CoA 95.6 0.2 4.4E-06 49.2 12.3 145 56-222 380-545 (569)
146 KOG0840 ATP-dependent Clp prot 95.2 0.077 1.7E-06 46.1 7.2 131 57-217 100-257 (275)
147 COG4799 Acetyl-CoA carboxylase 95.2 0.13 2.9E-06 49.5 9.3 101 45-161 93-194 (526)
148 PF13766 ECH_C: 2-enoyl-CoA Hy 94.6 0.19 4.2E-06 38.9 7.3 65 224-288 33-102 (118)
149 COG4799 Acetyl-CoA carboxylase 91.9 3.4 7.4E-05 40.1 12.5 150 50-221 331-498 (526)
150 KOG0540 3-Methylcrotonyl-CoA c 91.6 6.2 0.00013 37.4 13.3 151 47-224 353-514 (536)
151 PLN02851 3-hydroxyisobutyryl-C 80.8 5.8 0.00013 37.5 7.0 60 228-287 304-370 (407)
152 COG0074 SucD Succinyl-CoA synt 78.6 8 0.00017 34.5 6.7 75 39-142 143-240 (293)
153 PLN02988 3-hydroxyisobutyryl-C 78.1 7.6 0.00016 36.4 6.9 60 228-287 271-337 (381)
154 PLN02157 3-hydroxyisobutyryl-C 76.6 9.5 0.0002 36.0 7.1 60 228-287 299-365 (401)
155 PF13607 Succ_CoA_lig: Succiny 76.5 7.5 0.00016 30.9 5.5 52 65-141 41-92 (138)
156 PTZ00187 succinyl-CoA syntheta 71.7 12 0.00027 34.1 6.3 53 66-142 212-264 (317)
157 PF00549 Ligase_CoA: CoA-ligas 70.1 9.5 0.00021 30.9 4.8 68 56-143 54-121 (153)
158 smart00250 PLEC Plectin repeat 67.4 4.6 9.9E-05 24.3 1.9 18 196-213 18-35 (38)
159 TIGR00237 xseA exodeoxyribonuc 66.5 12 0.00027 35.6 5.5 78 60-160 169-247 (432)
160 TIGR00377 ant_ant_sig anti-ant 66.5 24 0.00051 25.9 6.1 50 34-88 3-52 (108)
161 PLN02522 ATP citrate (pro-S)-l 62.5 23 0.00051 35.3 6.7 52 66-142 210-262 (608)
162 KOG1684 Enoyl-CoA hydratase [L 62.2 11 0.00025 34.7 4.1 59 228-286 303-365 (401)
163 PF00681 Plectin: Plectin repe 60.6 3.1 6.8E-05 26.1 0.2 20 195-214 17-36 (45)
164 TIGR02886 spore_II_AA anti-sig 60.4 48 0.001 24.3 6.8 50 37-91 2-51 (106)
165 PF02601 Exonuc_VII_L: Exonucl 58.4 27 0.0006 31.6 6.1 78 61-161 55-136 (319)
166 PF06258 Mito_fiss_Elm1: Mitoc 57.4 1.1E+02 0.0024 27.7 9.8 135 29-169 94-246 (311)
167 PLN00125 Succinyl-CoA ligase [ 56.2 35 0.00077 30.9 6.3 54 65-142 192-245 (300)
168 PF01740 STAS: STAS domain; I 55.9 55 0.0012 24.4 6.6 48 36-88 2-57 (117)
169 COG1570 XseA Exonuclease VII, 48.3 43 0.00093 31.9 5.6 77 61-160 176-253 (440)
170 PRK06091 membrane protein FdrA 47.5 59 0.0013 32.1 6.6 23 121-143 270-292 (555)
171 PRK00286 xseA exodeoxyribonucl 46.7 36 0.00078 32.4 5.1 76 61-160 176-252 (438)
172 TIGR02717 AcCoA-syn-alpha acet 44.6 55 0.0012 31.3 6.0 54 64-142 189-242 (447)
173 PF06833 MdcE: Malonate decarb 44.5 2.2E+02 0.0047 24.9 11.5 145 55-219 40-189 (234)
174 PRK13505 formate--tetrahydrofo 43.2 52 0.0011 32.4 5.5 46 106-151 348-393 (557)
175 COG0528 PyrH Uridylate kinase 40.2 1E+02 0.0023 26.8 6.3 54 32-91 4-57 (238)
176 KOG1255 Succinyl-CoA synthetas 39.0 84 0.0018 27.6 5.5 55 66-141 219-273 (329)
177 PRK14556 pyrH uridylate kinase 38.9 1E+02 0.0022 27.1 6.3 55 33-93 15-69 (249)
178 PF03464 eRF1_2: eRF1 domain 2 37.8 57 0.0012 25.4 4.2 44 45-88 26-83 (133)
179 PRK05678 succinyl-CoA syntheta 36.3 1.2E+02 0.0026 27.4 6.4 23 65-87 187-209 (291)
180 cd06844 STAS Sulphate Transpor 34.0 1.6E+02 0.0034 21.3 5.8 49 38-91 3-51 (100)
181 cd07043 STAS_anti-anti-sigma_f 31.8 1.3E+02 0.0028 21.1 5.1 48 38-91 3-51 (99)
182 TIGR01019 sucCoAalpha succinyl 30.8 1.5E+02 0.0032 26.6 6.1 23 65-87 185-207 (286)
183 TIGR02153 gatD_arch glutamyl-t 30.7 1.9E+02 0.0042 27.4 7.1 33 56-88 118-150 (404)
184 cd04241 AAK_FomA-like AAK_FomA 27.9 1.1E+02 0.0024 26.5 4.8 36 51-89 13-48 (252)
185 cd07041 STAS_RsbR_RsbS_like Su 27.9 2.4E+02 0.0052 20.5 6.1 48 38-91 5-53 (109)
186 smart00463 SMR Small MutS-rela 27.3 1.4E+02 0.003 20.7 4.4 31 60-90 12-43 (80)
187 smart00870 Asparaginase Aspara 25.8 2.9E+02 0.0063 25.1 7.2 32 56-87 55-87 (323)
188 PF01583 APS_kinase: Adenylyls 25.4 2.5E+02 0.0054 22.8 6.0 64 65-138 17-82 (156)
189 COG3660 Predicted nucleoside-d 24.7 5.2E+02 0.011 23.3 10.0 135 32-168 109-261 (329)
190 COG0793 Prc Periplasmic protea 23.2 73 0.0016 30.2 2.8 95 44-151 205-308 (406)
191 PF01990 ATP-synt_F: ATP synth 23.0 3E+02 0.0065 19.9 6.1 53 63-142 27-80 (95)
192 COG0252 AnsB L-asparaginase/ar 22.7 2.8E+02 0.0061 25.7 6.5 32 56-87 78-110 (351)
193 PRK04183 glutamyl-tRNA(Gln) am 22.4 2.8E+02 0.006 26.5 6.5 33 56-88 131-163 (419)
194 PF01268 FTHFS: Formate--tetra 22.3 1.4E+02 0.003 29.5 4.5 77 75-155 320-396 (557)
195 TIGR00520 asnASE_II L-asparagi 21.9 2.9E+02 0.0062 25.6 6.4 33 55-87 82-115 (349)
196 PRK09461 ansA cytoplasmic aspa 21.1 3.9E+02 0.0084 24.5 7.1 33 55-88 60-92 (335)
197 KOG3179 Predicted glutamine sy 20.9 2E+02 0.0044 24.7 4.7 43 79-140 60-103 (245)
198 PRK14053 methyltransferase; Pr 20.4 1.6E+02 0.0034 24.7 3.8 66 36-101 16-88 (194)
No 1
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-55 Score=387.19 Aligned_cols=253 Identities=26% Similarity=0.378 Sum_probs=222.4
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++............
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 4689999999999999999999999999999999999999999999999999999 799999999987542111111223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+..++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 44555566788899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +...+..++ +
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 242 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGS 242 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988887777 7999999999999999998765554444433 345566666 7
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 243 ~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 243 ADLREGLAAWIERRRPAY 260 (260)
T ss_pred hhHHHHHHHHhccCCCCC
Confidence 899999999999999986
No 2
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-54 Score=379.75 Aligned_cols=248 Identities=24% Similarity=0.242 Sum_probs=218.6
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++|+|||||.|++||+|.|++++... +.....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHH
Confidence 46889999999999999999999999999999999999997 789999999999999999999987532 111222
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345567788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++.......+.... +...+..++ ++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~ 235 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAP 235 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999988877777 8999999999999999998765554444433 244555666 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|++||+|+|.
T Consensus 236 d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 236 EAKERLRAFLEKKAAKVK 253 (255)
T ss_pred HHHHHHHHHhccCCCCCC
Confidence 999999999999999983
No 3
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-54 Score=383.47 Aligned_cols=255 Identities=21% Similarity=0.285 Sum_probs=222.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-------
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN------- 105 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~------- 105 (288)
++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 5 YESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred cceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999998753210
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
.........+...+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 164 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI 164 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH
Confidence 01112233344556778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RID 261 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~ 261 (288)
+|.. +++|+++|++++|+||+++||||+++|+ +++.+.+.++ ++++..+|.+++.+|+.+++.....+..... +..
T Consensus 165 ~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~ 244 (272)
T PRK06142 165 IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVAT 244 (272)
T ss_pred hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999 9999999999999999999999999996 7788777777 7999999999999999998765554444433 345
Q ss_pred HHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 262 IVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 262 ~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
.+..++ +++..|++.+|+|||+|+|.
T Consensus 245 ~~~~~~~~~d~~egv~af~~kr~p~~~ 271 (272)
T PRK06142 245 WNAAMLPSKDLTEAIAAHMEKRPPEFT 271 (272)
T ss_pred HHHHHhcCccHHHHHHHHhcCCCCCCC
Confidence 555666 78999999999999999984
No 4
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-54 Score=379.13 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=219.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
+.++.++++++|++||||||++ |++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++... +...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence 3468999999999999999985 999999999999999999999999999999999 789999999987531 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233445566788899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............ +...+..++
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 236 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD 236 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877777 8999999999999999998765444444333 355666777
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..|++.+|++||+|+|
T Consensus 237 ~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 237 TEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred CchHHHHHHHHhcCCCCCC
Confidence 6899999999999999998
No 5
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-54 Score=380.60 Aligned_cols=252 Identities=21% Similarity=0.350 Sum_probs=223.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.+.|.++++++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++... ..+.+.
T Consensus 10 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~--~~~~~~ 87 (269)
T PRK06127 10 TGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEES--RSDAEA 87 (269)
T ss_pred CCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhc--ccchHH
Confidence 34589999999999999999999999999999999999999999999999999998 799999999987532 112222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 334445566788889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......+....+. ...+..++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 247 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD 247 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888777 79999999999999999987765555444433 55666776
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 248 ~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 248 SEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred ChHHHHHHHHHhcCCCCCC
Confidence 6899999999999999997
No 6
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4.7e-54 Score=379.50 Aligned_cols=251 Identities=18% Similarity=0.250 Sum_probs=216.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... . +.
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~-~~-- 75 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--Y-DG-- 75 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--c-cc--
Confidence 35688999999999999999999999999999999999999999999999999999 799999999987421 1 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 76 RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 111223346678889999999999999999999999999999999999999999999999998888899999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc-C
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF-G 268 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~ 268 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............+...+..++ +
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGMYALKLYYDT 235 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999988877777 8999999999999999998654321111111234556666 6
Q ss_pred cCcHHHHHHhhcCCCCCC-CC
Q 023017 269 LDTVEEIIDSLDDVAPSY-AY 288 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~-~~ 288 (288)
++..+++.+|+|||+|+| .|
T Consensus 236 ~d~~e~~~af~~kr~p~~~~~ 256 (256)
T TIGR03210 236 AESREGVKAFQEKRKPEFRKY 256 (256)
T ss_pred hhHHHHHHHHhccCCCCCCCC
Confidence 799999999999999998 55
No 7
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-54 Score=380.91 Aligned_cols=255 Identities=19% Similarity=0.310 Sum_probs=220.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc--CC
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ--GK 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~-~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~--~~ 108 (288)
|.+++.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 34579999999999999999999999995 9999999999999999999999999999999999999987532110 01
Q ss_pred hHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 109 LEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 109 ~~~-~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
... ...+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~ 264 (288)
.. +++|+++|++++|+||+++||||+++|++++++.+.++ ++++..||.+++.+|+.++............ +.+.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 240 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQA 240 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999988877777 8999999999999999998765444444333 245556
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|++||+|+|
T Consensus 241 ~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 241 LAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHhcCHhHHHHHHHHHcCCCCCC
Confidence 666 6899999999999999997
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-54 Score=379.32 Aligned_cols=248 Identities=23% Similarity=0.330 Sum_probs=219.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++... +. .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~ 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--M 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--h
Confidence 35688999999999999999999999999999999999999999999999999999999999999987531 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11223344567789999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++.....+..... +...+..++ +
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT 236 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988877777 7999999999999999998765555444433 345566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 237 ~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 237 EDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred hhHHHHHHHHhccCCCCC
Confidence 899999999999999987
No 9
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-54 Score=379.05 Aligned_cols=251 Identities=22% Similarity=0.362 Sum_probs=223.2
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCCh
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
|.++|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +.
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 345789986 789999999999999999999999999999999999999999999999 599999999987531 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 189 (288)
.....+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 23344555667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHH
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKC 266 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~ 266 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..+
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 236 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGT 236 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777 8999999999999999998765555444433 34566666
Q ss_pred c-CcCcHHHHHHhhcCCCCCC
Q 023017 267 F-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 267 ~-~~~~~e~~~~~lekr~p~~ 286 (288)
+ +++..+++.+|++||+|+|
T Consensus 237 ~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 237 IPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred hcCHhHHHHHHHHhcCCCCCC
Confidence 6 6899999999999999998
No 10
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-53 Score=378.46 Aligned_cols=253 Identities=23% Similarity=0.306 Sum_probs=218.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||+|.|++||+|.|++++............
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 457899999999999999999999999999999999999999 9999999999999999999999987431100111111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12222344577889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +...+..++ +
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 241 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRS 241 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998888877777 8999999999999999998765555444433 345566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|.|
T Consensus 242 ~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 242 ADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred hhHHHHHHHHhcCCCCCC
Confidence 899999999999999987
No 11
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-53 Score=379.23 Aligned_cols=253 Identities=20% Similarity=0.292 Sum_probs=217.9
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.|.+++ +++|++|+||||++.|+++.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++... .....
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~~ 86 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEM--ADDFE 86 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhc--cCcHH
Confidence 466799998 589999999999999999999999999999999999999999999999999999999987542 11222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+.....+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc-
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF- 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~- 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...................++
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEFMGFS 246 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999988877777 8999999999999999998542211111112222222345
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 247 ~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 247 GPDVREGLASLREKRAPDF 265 (268)
T ss_pred ChhHHHHHHHHHhcCCCCC
Confidence 6899999999999999998
No 12
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.9e-53 Score=377.58 Aligned_cols=250 Identities=22% Similarity=0.294 Sum_probs=220.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++... .+.+..
T Consensus 10 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~ 86 (266)
T PRK08139 10 APLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAYF 86 (266)
T ss_pred CCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999987531 122233
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+++.+.+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|++++|.. ++
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 44556667788899999999999999999999999999999999999999999999999999775 56899999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.++..+|+.++............ +.+.+..++ +
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 245 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA 245 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998888777 8999999999999999998776555544443 345555666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 246 ~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 246 EDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred chHHHHHHHHhcCCCCCC
Confidence 899999999999999997
No 13
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-53 Score=376.59 Aligned_cols=253 Identities=22% Similarity=0.322 Sum_probs=223.6
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.++.++++++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|+.||+|.|++++.... ........
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~-~~~~~~~~ 81 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENR-AKPPSVQA 81 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcc-cccchhHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999875421 11122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (260)
T PRK07511 82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE 161 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence 4556677889999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++++||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +.+.+..++ ++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 241 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHA 241 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998887777666 7899999999999999998765554444333 356666777 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|+++|+|+|.
T Consensus 242 ~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 242 DALEGIAAFLEKRAPDYK 259 (260)
T ss_pred hHHHHHHHHhccCCCCCC
Confidence 999999999999999974
No 14
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-53 Score=379.33 Aligned_cols=252 Identities=21% Similarity=0.255 Sum_probs=221.7
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.+.++++++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......+......
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998743111112222334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC-CCchHHHHhhcchHH-HHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~~~~g~~-a~~ 192 (288)
+.+.+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. +++
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 455556788899999999999999999999999999999999999999999999999995 678899999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..++ ++
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~ 257 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTE 257 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998888877777 8999999999999999998776555554443 355666676 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
|..+++.+|+|||+|+|
T Consensus 258 d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 258 DFRRAYEAFVAKRKPVF 274 (277)
T ss_pred hHHHHHHHHhcCCCCCC
Confidence 99999999999999997
No 15
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.3e-53 Score=376.50 Aligned_cols=247 Identities=23% Similarity=0.310 Sum_probs=218.5
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
..|.++++++|++||||||+++|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|.|++++... +. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence 3578899999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+.....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 2223345678889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
++++|++++|+||+++||||+++|++++.+.+..+ ++++..+|.++..+|+.++...........+ +...+..++ ++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE 235 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999888777777 8999999999999999998765555444443 355666666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 236 ~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 236 DRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHhccCCCCC
Confidence 99999999999999987
No 16
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-53 Score=376.46 Aligned_cols=249 Identities=25% Similarity=0.367 Sum_probs=219.7
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.+.++. +++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~--- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---G--- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---c---
Confidence 345688887 789999999999999999999999999999999999999999999999999999999987531 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 79 AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 1122334456788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++............ +.+.+..++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 238 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLF 238 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888777777 7899999999999999998765554444333 345566666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 239 ~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 239 DSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred cCHHHHHHHHHHhcCCCCCC
Confidence 6889999999999999997
No 17
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.8e-53 Score=375.99 Aligned_cols=249 Identities=22% Similarity=0.296 Sum_probs=216.3
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|.|++++.... ....+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTP-GGAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcc-ccchhHHHHH
Confidence 467889999999999999999999999999999999999998 99999999999999999999875311 0111111122
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22234577889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++............ +.+.+..++ +++.
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~ 238 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADY 238 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999988877777 7999999999999999998765554444433 345566666 7899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.+++.+|+|||+|+|
T Consensus 239 ~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 239 AEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999999998
No 18
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-53 Score=377.07 Aligned_cols=247 Identities=20% Similarity=0.226 Sum_probs=213.7
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.+++|+++|+|||+|.|+.||+|.|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 467889999999999999999999999999999999999999999999999999999999999875421111 1112
Q ss_pred HHHHHH-HHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 116 FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 116 ~~~~~~-l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
.....+ +...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111222 23357899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...........+. ...+..++ +++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 236 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSED 236 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999888777777 89999999999999999987655555444433 45666677 678
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|++||+|+|
T Consensus 237 ~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 237 AKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999987
No 19
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.8e-53 Score=379.45 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=217.1
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc---CC----
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ---GK---- 108 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~---~~---- 108 (288)
+..+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44556899999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11223334455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVD 264 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~ 264 (288)
. +++++++|++++|+||+++||||+++|+ +++.+.+.++ ++++..+|.+++.+|+.++............. ...+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 249 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNS 249 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999995 7788777777 89999999999999999987655544444433 44555
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..|++.+|+|||+|+|
T Consensus 250 ~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 250 AMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred HhccChhHHHHHHHHhccCCCCC
Confidence 566 7899999999999999997
No 20
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2.5e-53 Score=375.99 Aligned_cols=250 Identities=27% Similarity=0.430 Sum_probs=222.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 56789999999999999999999999999999999999999999999999999999 999999999987532 1122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233444456788889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++..........+ +...+..++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 238 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS 238 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888877777 7999999999999999998765555544443 355666666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 239 ~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 239 TEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred CHHHHHHHHHHhcCCCCCC
Confidence 6799999999999999998
No 21
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-53 Score=376.02 Aligned_cols=248 Identities=24% Similarity=0.339 Sum_probs=220.0
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
++.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... ........
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV---TEAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcc---CchhhHHH
Confidence 68899999999999999985 999999999999999999999999999999999999999999987532 11122233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
+....++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~ 270 (288)
+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...........+ +...+..++ +++
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSED 238 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999988877777 7999999999999999998765544444433 355666776 689
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|+|||+|+|
T Consensus 239 ~~egi~af~~kr~p~~ 254 (257)
T PRK07658 239 AKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 9999999999999997
No 22
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-53 Score=376.19 Aligned_cols=251 Identities=24% Similarity=0.282 Sum_probs=216.0
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ..+ ...
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~-~~~ 81 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKP-PGD-SFK 81 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhcc-ccc-hhh
Confidence 356899999999999999999999999999999999999999999999999999999999999999876421 111 111
Q ss_pred HH-H-HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 113 KD-F-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 113 ~~-~-~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
.. + ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 82 DGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 11 1 112222 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+...... ...+..++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 240 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVF 240 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988777777 89999999999999999987655554444433 45566666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 ~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 241 LSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred cCccHHHHHHHHHccCCCCC
Confidence 6899999999999999997
No 23
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2.1e-53 Score=378.89 Aligned_cols=254 Identities=22% Similarity=0.296 Sum_probs=219.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
|++|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++............
T Consensus 7 ~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 7 WDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred cccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999987432111111112
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 166 (275)
T PRK09120 87 ERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDAL 166 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHH
Confidence 22333456778889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H--HHHHHHc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I--DIVDKCF 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~--~~~~~~~ 267 (288)
+|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++............. . .....++
T Consensus 167 ~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 246 (275)
T PRK09120 167 YYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSL 246 (275)
T ss_pred HHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888777 89999999999999999987765555444332 1 2233445
Q ss_pred -Cc-CcHHHHHHhhcCCCCCC
Q 023017 268 -GL-DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~-~~~e~~~~~lekr~p~~ 286 (288)
++ |..+++.+|++||..++
T Consensus 247 ~~~~d~~eg~~afl~kr~~~~ 267 (275)
T PRK09120 247 DPEGGREEGLKQFLDDKSYKP 267 (275)
T ss_pred CCHHHHHHHHHHHHhcccCCc
Confidence 55 78999999999988655
No 24
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-53 Score=377.31 Aligned_cols=255 Identities=19% Similarity=0.253 Sum_probs=221.9
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCcccccCChhhHHHhhccC--C
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--K 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~-~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~--~ 108 (288)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.|++||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 3668999999999999999999999999999999999999999876 499999999999999999999875321100 0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
......+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01122334456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++............ +...+..
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~ 241 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRI 241 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999988877777 7999999999999999998765554444443 3556666
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ ++|..+++.+|+|||+|+|
T Consensus 242 ~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 242 AGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HhcChhHHHHHHHHhcCCCCCC
Confidence 76 6899999999999999998
No 25
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-54 Score=369.50 Aligned_cols=247 Identities=25% Similarity=0.338 Sum_probs=215.1
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
......+++|+.|+||||+++|+++..++.+|.+++..+++|+.++++||||.|+.||+|+|++++.... ..+..
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~---~~~~~-- 112 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDE---FQDVS-- 112 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcc---ccccc--
Confidence 3445567899999999999999999999999999999999999999999999999999999999986521 01100
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
...+.+.+..+.+.+||+||+|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+|++.+|+|.+|.. |+++
T Consensus 113 -~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 113 -DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred -cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 11122334445589999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLD 270 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~ 270 (288)
++||++++|+||+++||||+|+|.+++..++.++ .++++.||..++..|+.++...+..+.+.+.. ..++...| ..+
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d 271 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATED 271 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHH
Confidence 9999999999999999999999999977767677 89999999999999999998766665555543 56666666 589
Q ss_pred cHHHHHHhhcCCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~~ 287 (288)
..|++.+|.|||+|+|.
T Consensus 272 ~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 272 RLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHHHHhcccCCcccc
Confidence 99999999999999983
No 26
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-53 Score=376.12 Aligned_cols=252 Identities=23% Similarity=0.352 Sum_probs=217.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999998753211111 111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
......+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 12234566788899999999999999999999999999999999999999999999999999887654 88999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH-HH-HHHHHHHHc-
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV-IH-RIDIVDKCF- 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~-~~-~~~~~~~~~- 267 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.......... .+ +...+..++
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~ 240 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA 240 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998898888777 89999999999999999987644444333 22 244555566
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 ~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 241 TEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred CHHHHHHHHHHhcCCCCCC
Confidence 6789999999999999998
No 27
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.2e-53 Score=375.92 Aligned_cols=249 Identities=17% Similarity=0.235 Sum_probs=213.9
Q ss_pred CcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 34 ~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
..+.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++.... ......
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG-YIDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc-ccchhh
Confidence 3578888 899999999999999999999999999999999999999999999999 7999999999764210 001111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
... ..+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 111 1234677789999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...... .... .+...+..++
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~ 237 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQ-AGLQELAGNATMLFYM 237 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877777 8999999999999999998754322 2222 2234555556
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 238 ~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 238 TEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred CccHHHHHHHHhccCCCCC
Confidence 7899999999999999998
No 28
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.9e-53 Score=373.48 Aligned_cols=242 Identities=23% Similarity=0.338 Sum_probs=215.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999984 899999999987531 122333455566
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~ 198 (288)
+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEI 275 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~ 275 (288)
+++++||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+..... +...+..++ +++..+++
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~ 237 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGL 237 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999988777777 8999999999999999998765554444443 355666666 78999999
Q ss_pred HHhhcCCCCCC
Q 023017 276 IDSLDDVAPSY 286 (288)
Q Consensus 276 ~~~lekr~p~~ 286 (288)
.+|+|||+|+|
T Consensus 238 ~af~ekr~p~~ 248 (251)
T PLN02600 238 AAFAEKRKPVY 248 (251)
T ss_pred HHHhcCCCCCC
Confidence 99999999997
No 29
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-53 Score=373.41 Aligned_cols=246 Identities=22% Similarity=0.301 Sum_probs=213.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++... .....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~- 77 (254)
T PRK08252 2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI- 77 (254)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh-
Confidence 45789999999999999999999999999999999999999999999999999999999999999987531 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
....+..++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 78 --~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 153 (254)
T PRK08252 78 --PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM 153 (254)
T ss_pred --hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHH
Confidence 111122222 2479999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+....+ +...+..++ +
T Consensus 154 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~ 233 (254)
T PRK08252 154 ELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTS 233 (254)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988777777 8999999999999999998765444444333 344555666 7
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 234 ~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 234 ADAKEGATAFAEKRAPVW 251 (254)
T ss_pred chHHHHHHHHhcCCCCCC
Confidence 899999999999999998
No 30
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-53 Score=374.01 Aligned_cols=251 Identities=21% Similarity=0.325 Sum_probs=220.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......+....
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35788999999999999999999999999999999999999999999999999999999999999987642211222222
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 23445567788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~ 268 (288)
+|+++|++++|+||+++||||+++|++++.+.+..+ ++++..+|.++..+|+.++......++..... ...+..++ +
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 240 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK 240 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988877777 89999999999999999987655555444433 45666666 6
Q ss_pred cCcHHHHHHhhcCCC
Q 023017 269 LDTVEEIIDSLDDVA 283 (288)
Q Consensus 269 ~~~~e~~~~~lekr~ 283 (288)
++..+++.+|++||+
T Consensus 241 ~~~~e~~~af~~kr~ 255 (255)
T PRK07260 241 EDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999985
No 31
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-53 Score=374.47 Aligned_cols=249 Identities=24% Similarity=0.346 Sum_probs=219.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ...+
T Consensus 6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~---~~~~ 82 (262)
T PRK06144 6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF---STAE 82 (262)
T ss_pred CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhc---cchh
Confidence 455799999999999999999999999999999999999999999999999999998 799999999987542 1112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccc-ccccCCCchHHHHhhcchHH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGHL 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~~~~g~~ 189 (288)
....+.+.+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 22234455677888899999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 023017 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (288)
Q Consensus 190 -a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+. ...+.+..++
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~---~~~~~~~~~~ 239 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRREGLP---DGDDLIRMCY 239 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH---HHHHHHHHHh
Confidence 99999999999999999999999999999988877777 899999999999999999866433322 2234555666
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 240 ~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 240 MSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred cChHHHHHHHHHhcCCCCCC
Confidence 6899999999999999987
No 32
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.4e-53 Score=375.72 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=216.8
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+++.++++ ++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ..+...
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence 678999985 789999999999999999999999999999999999999999999999999999999875321 101111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+++++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11223345678888999999999999999999999999999999999999999999999999987765 588999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH--HHHHHHHHc
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH--RIDIVDKCF 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~--~~~~~~~~~ 267 (288)
++++++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............ ....+..++
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIR 241 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888877777 8999999999999999998776555444332 234455566
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|+|||+|+|
T Consensus 242 ~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 242 VSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred cCHHHHHHHHHHHccCCCCC
Confidence 6899999999999999987
No 33
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-53 Score=373.90 Aligned_cols=248 Identities=22% Similarity=0.310 Sum_probs=219.7
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.++.++.+++|++|+||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|.|++++... .+.....
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence 4699999999999999999999999999999999999999 58899999999999999999999987532 1122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 5556677888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~ 269 (288)
|+++|++++|+||+++||||+++ ++++.+.+.++ ++++..++.++..+|+.++......+...... .+.+...+ ++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 240 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTA 240 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999 77787777777 89999999999999999987655555444333 45555666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 241 ~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 241 DHKEGIRAFLEKRLPVF 257 (260)
T ss_pred hHHHHHHHHhcCCCCCC
Confidence 99999999999999998
No 34
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-53 Score=372.97 Aligned_cols=252 Identities=22% Similarity=0.323 Sum_probs=216.3
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
++.+.++++ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... +...
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence 456888886 68999999999999999999999999999999999999999999999999999999987532111 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHH
Confidence 12233445678889999999999999999999999999999999999999999999999999999988855 458998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.++..+|+.+++......+... .+...+..++
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 240 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE 240 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888877776 899999999999999999876444333333 3355666666
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 241 s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 241 TEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred CHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999998
No 35
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=377.92 Aligned_cols=254 Identities=20% Similarity=0.242 Sum_probs=217.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC-----
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG----- 107 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~----- 107 (288)
++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999864211000
Q ss_pred -------C-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchH
Q 023017 108 -------K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS 179 (288)
Q Consensus 108 -------~-~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~ 179 (288)
. ......+....+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 01112233334567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCC--CChh
Q 023017 180 FYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVY--PDKN 254 (288)
Q Consensus 180 ~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~--~~~~ 254 (288)
++|++++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|.++..+|+.++.... ....
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~ 242 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADHPME 242 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH
Confidence 9999999999 99999999999999999999999999998888777777 788885 89999999999987642 2223
Q ss_pred hHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 255 SVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
....+...+..++ +++..+++.+|++||+|+|
T Consensus 243 ~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f 275 (296)
T PRK08260 243 AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275 (296)
T ss_pred HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence 3333444556666 6899999999999999998
No 36
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-52 Score=370.76 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=216.3
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.++.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++... +..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chh
Confidence 34677775 688999999999999999999999999999999999999999999999 799999999987532 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 23345566678888999999999999999999999999999999999999999999999998 8888899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......+..... +...+..++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 239 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAF 239 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888777 8999999999999999998765555544433 345566666
Q ss_pred -CcCcHHHHHHhhcCCC
Q 023017 268 -GLDTVEEIIDSLDDVA 283 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~ 283 (288)
++|..+++.+|+|||+
T Consensus 240 ~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 240 LTGEPQRHMAAFLNRKR 256 (256)
T ss_pred cChHHHHHHHHHHhhcC
Confidence 6899999999999985
No 37
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-52 Score=374.31 Aligned_cols=255 Identities=22% Similarity=0.307 Sum_probs=218.7
Q ss_pred CCCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~-~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.|.+++++ +|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 35679999998 99999999999999999999999999999999999999999999999999999999875421100000
Q ss_pred --HHHHH----HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 111 --ECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 111 --~~~~~----~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
....+ ...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 00111 122455677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC-CHHHHHHHHHHhhccCCCChhhHHH-HH
Q 023017 185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD-DPSVIEACLEKYSDLVYPDKNSVIH-RI 260 (288)
Q Consensus 185 ~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~-~~~~~~~~k~~l~~~~~~~~~~~~~-~~ 260 (288)
++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|.++..+|+.+++.....+....+ +.
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~ 242 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARAN 242 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999 99999999999999999999999999998888877777 788875 9999999999998775555544443 34
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
..+..++ +++..|++.+|++||+|.|
T Consensus 243 ~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 243 REMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 5555665 7899999999999999997
No 38
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-52 Score=370.79 Aligned_cols=248 Identities=23% Similarity=0.263 Sum_probs=214.0
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++.... ....
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG--KRGW 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC--cchh
Confidence 356789999999999999999999999999999999999999999999999999998 7999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
. ...+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 ~----~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P----ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h----hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 1 11122233 34589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHH---HHHHH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI---DIVDK 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~---~~~~~ 265 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++.............. ..+..
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 234 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEA 234 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777 899999999999999999876555554444322 23455
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..+++.+|++||+|+|
T Consensus 235 ~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 235 RRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred HhcCccHHHHHHHHHccCCCCC
Confidence 66 6899999999999999987
No 39
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2.6e-52 Score=369.92 Aligned_cols=247 Identities=21% Similarity=0.314 Sum_probs=215.1
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
..+.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ...
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~-- 83 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGD-- 83 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cch--
Confidence 345788886 7899999999999999999999999999999999999999999999999999999999865321 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
.. ....+++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 84 -~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 84 -VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred -hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 11 1124566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++............. ...+..++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 239 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYY 239 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888877777 89999999999999999987655555444433 34445543
Q ss_pred ---CcCcHHHHHHhhcCCCCC
Q 023017 268 ---GLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 268 ---~~~~~e~~~~~lekr~p~ 285 (288)
+++..+++.+|+|||+||
T Consensus 240 ~~~~~d~~e~~~af~ekr~~~ 260 (265)
T PLN02888 240 NGMTKEQFQKMQEFIAGRSSK 260 (265)
T ss_pred ccCCHHHHHHHHHHHhcCCCC
Confidence 689999999999999987
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-52 Score=369.79 Aligned_cols=249 Identities=24% Similarity=0.345 Sum_probs=222.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.... .. .
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~-~-- 78 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP--PK-P-- 78 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC--cc-h--
Confidence 346899999999999999999999999999999999999999999999999999999999999999876421 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+...+++++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~ 158 (259)
T PRK06688 79 PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAA 158 (259)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHH
Confidence 33455667888899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-C
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-G 268 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 268 (288)
+++++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++.......+.... +...+..++ +
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 238 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRT 238 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998888877777 7999999999999999998765555544443 355566666 6
Q ss_pred cCcHHHHHHhhcCCCCCC
Q 023017 269 LDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p~~ 286 (288)
++..+++.+|++||+|+|
T Consensus 239 ~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 239 PDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 899999999999999997
No 41
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-52 Score=372.52 Aligned_cols=255 Identities=19% Similarity=0.251 Sum_probs=215.8
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC---
Q 023017 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--- 107 (288)
Q Consensus 32 ~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~--- 107 (288)
.++.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.......
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 86 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT 86 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence 455688887 7899999999999999999999999999999999999999999999999999999999864211000
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC-CCchHHHHhhcc
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLP 186 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~~~~ 186 (288)
...........+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 1111122334556778889999999999999999999999999999999999999999999999997 788899999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCC-ChhhHHH-HHH-
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYP-DKNSVIH-RID- 261 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~-~~~~~~~-~~~- 261 (288)
|.. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++..... .+..... +..
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~ 246 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLG 246 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 999 99999999999999999999999999999988877777 899999999999999999865432 3333322 221
Q ss_pred -HHHHHcCcCcHHHHHHhhcCCCCCC
Q 023017 262 -IVDKCFGLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 262 -~~~~~~~~~~~e~~~~~lekr~p~~ 286 (288)
.+..+.+++..+++.+|++||+|+|
T Consensus 247 ~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 247 QLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHhccChhHHHHHHHHhccCCCCC
Confidence 2233337899999999999999997
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.4e-52 Score=369.68 Aligned_cols=248 Identities=21% Similarity=0.320 Sum_probs=215.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
.+.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ... .
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~--~~~-~- 76 (261)
T PRK03580 2 SESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEG--EAP-D- 76 (261)
T ss_pred CceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhcc--Ccc-h-
Confidence 446899999999999999995 6999999999999999999999999999999999 799999999987531 111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+.......+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 -ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred -hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11112223456788999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H----HHHH
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I----DIVD 264 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~----~~~~ 264 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+...... . ..+.
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 235 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYP 235 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999998888777 79999999999999999987655544443332 1 2455
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|+|||+|+|
T Consensus 236 ~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 236 SVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHhcCccHHHHHHHHhcCCCCCC
Confidence 666 6899999999999999997
No 43
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-52 Score=371.61 Aligned_cols=251 Identities=16% Similarity=0.245 Sum_probs=215.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|.|++++... .....+
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-~~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYG-GYVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcc-cccchh
Confidence 356799999999999999999999999999999999999999999999999999999 699999999986421 000111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 234567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~ 267 (288)
+++|+++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++.... ...... .+...+..++
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~ 246 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFY 246 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877777 89999999999999999987543 233222 2234455555
Q ss_pred -CcCcHHHHHHhhcCCCCCC
Q 023017 268 -GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 -~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 247 ~~~d~~egi~af~~kr~p~~ 266 (273)
T PRK07396 247 MTEEAQEGRNAFNEKRQPDF 266 (273)
T ss_pred cChhHHHHHHHHhCCCCCCC
Confidence 6899999999999999987
No 44
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-52 Score=369.11 Aligned_cols=252 Identities=22% Similarity=0.246 Sum_probs=216.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999999999875321 111111
Q ss_pred HHH----HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 112 CKD----FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 112 ~~~----~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
... ....+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 111 1223455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~ 264 (288)
.. +++++++|++++|+||+++||||+++++ +.+.+.++ ++++..+|.++..+|+.++............ +...+.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 237 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQI 237 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999954 55666666 8999999999999999998775554444333 345556
Q ss_pred HHc-CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.++ +++..+++.+|+|||+|+|
T Consensus 238 ~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 238 RLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred HHhcChhHHHHHHHHhcCCCCCC
Confidence 666 6899999999999999998
No 45
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-52 Score=367.74 Aligned_cols=249 Identities=22% Similarity=0.327 Sum_probs=217.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.|.++++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence 5678999999999999999997 69999999999999999999999999999999999999999999875321 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
...+...+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+. |+++++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344556678888999999999999999999999999999999999999999999999996 4567899999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+...... ...+..++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK 235 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988877777 89999999999999999987655555444433 45555665
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..+++.+|++||+|+|
T Consensus 236 s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 236 TEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ChHHHHHHHHHhccCCCCC
Confidence 6899999999999999997
No 46
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=5.7e-52 Score=367.10 Aligned_cols=248 Identities=17% Similarity=0.212 Sum_probs=216.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-C-CcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-G-RAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~-g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.+++|+ +|+|||||. | ++||+|.|++++... ..+
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~--~~~-- 77 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG--GRD-- 77 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc--ccc--
Confidence 557899999999999999999999999999999999999999887 999999996 3 799999999987531 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
...+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 123344566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CCh-hhHH-HHHHHHHH
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDK-NSVI-HRIDIVDK 265 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~-~~~~-~~~~~~~~ 265 (288)
+++++++|++++|+||+++||||+|+|++++++.+.++ ++++..+|.++..+|+.++.... ... .... .+......
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRA 236 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999998898888777 89999999999999999986432 222 2222 23445566
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..+++.+|++||+|+|
T Consensus 237 ~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 237 VYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HhCChhHHHHHHHHhccCCCCC
Confidence 66 6899999999999999997
No 47
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-52 Score=364.94 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=210.4
Q ss_pred CcEEEEeeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 34 ~~v~~~~~~~---v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
+.|.++++++ |++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... . +.
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~-~-~~- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAA-M-GG- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcc-c-cc-
Confidence 3688888874 9999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~- 189 (288)
..+...+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12233455678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc
Q 023017 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 190 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~ 267 (288)
+++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++... ..+..... +.+.+..++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~ 236 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARL 236 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988877777 8999999999999999998653 23333333 234455555
Q ss_pred -CcCcHHHHHHhhcC
Q 023017 268 -GLDTVEEIIDSLDD 281 (288)
Q Consensus 268 -~~~~~e~~~~~lek 281 (288)
+++..+++.+|+||
T Consensus 237 ~~~~~~e~~~af~e~ 251 (251)
T PRK06023 237 KSAEARAAFEAFMRR 251 (251)
T ss_pred CCHHHHHHHHHHhcC
Confidence 68999999999985
No 48
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.3e-51 Score=373.86 Aligned_cols=251 Identities=17% Similarity=0.251 Sum_probs=215.9
Q ss_pred CCCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCC
Q 023017 32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 32 ~~~~v~~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.++.|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ....
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~-~~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD-GYVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc-cccc
Confidence 466789988 589999999999999999999999999999999999999999999999 899999999976421 0011
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH
Q 023017 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
.+....+ ...+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|.+|++++|++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12356778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHH
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDK 265 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~ 265 (288)
. +++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++..... ......+ ...+..
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 298 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLL 298 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998887777 899999999999999999876433 2222222 345556
Q ss_pred Hc-CcCcHHHHHHhhcCCCCCC
Q 023017 266 CF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 266 ~~-~~~~~e~~~~~lekr~p~~ 286 (288)
++ +++..|++.+|+|||+|+|
T Consensus 299 ~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 299 FYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HhcCHHHHHHHHHHhccCCCCC
Confidence 66 6899999999999999998
No 49
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.1e-51 Score=363.07 Aligned_cols=249 Identities=27% Similarity=0.403 Sum_probs=217.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
+..+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.. ..+....
T Consensus 4 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~~ 80 (257)
T COG1024 4 YETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNAA 80 (257)
T ss_pred CCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999864 1122222
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
..+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 81 ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 35667777899999999999999999999999999999999999999999999999999999889999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
+|++||+.++++||+++||||+++++ +++.+.+.++ ++++. +|.++...|+.++.......+..... ...+...+
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS 239 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986 5888888888 66666 99999999999987755444444333 33344344
Q ss_pred CcCcHHHHHHhhcCCCCCC
Q 023017 268 GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 268 ~~~~~e~~~~~lekr~p~~ 286 (288)
+++..|++.+|++ |+|.|
T Consensus 240 ~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 240 SEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred ChhHHHHHHHHHc-cCCCC
Confidence 6899999999999 99986
No 50
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-51 Score=364.04 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=210.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|.+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... .. ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~--~~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTG--RG--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcc--cc--hh
Confidence 345789999999999999999999999999999999999999999999999999999999999999987532 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.... ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 001112233479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHcC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCFG 268 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~ 268 (288)
++++++|++++|+||+++||||+|+|++++.+.+.++ ++++..+|.+++.+|+.++......+...... ...+...+.
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~ 234 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA 234 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998887777 79999999999999999987655555444332 333444555
Q ss_pred cCcHHHHHHhhcCCCC
Q 023017 269 LDTVEEIIDSLDDVAP 284 (288)
Q Consensus 269 ~~~~e~~~~~lekr~p 284 (288)
++..|++.+|+||+.+
T Consensus 235 ~d~~egi~af~~~~~~ 250 (254)
T PRK08259 235 AEALEGAARFAAGAGR 250 (254)
T ss_pred hHHHHHHHHHHhhhcc
Confidence 9999999999987654
No 51
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-51 Score=362.28 Aligned_cols=252 Identities=21% Similarity=0.240 Sum_probs=217.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
...+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.... ....+..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGG-GDPYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcc-cCchhHH
Confidence 346889999999999999999999999999999999999999999999999999999999999999875310 0111122
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..+...+.+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++++..+++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999999999999999986645999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-Cc
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GL 269 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~ 269 (288)
++++|++++|+||+++||||++++ ++++.+..+ ++++..++.++..+|+.+++..........+. ......++ ++
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSD 241 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999975 477777777 89999999999999999988766555444433 44556666 68
Q ss_pred CcHHHHHHhhcCCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~~ 287 (288)
+..+++.+|++||+|+|.
T Consensus 242 ~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 242 EAREGMTAFLQKRPPRWA 259 (260)
T ss_pred hHHHHHHHHhcCCCCCCC
Confidence 999999999999999984
No 52
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=363.26 Aligned_cols=244 Identities=21% Similarity=0.355 Sum_probs=213.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .+ .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~--~ 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAP--GR--P 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccc--cc--c
Confidence 4557899999999999999999999999999999999999999999999999999999999999999876421 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
.......+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344556677789999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CChhhHHH-HHHHHHHHc
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDKNSVIH-RIDIVDKCF 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~~~~~~-~~~~~~~~~ 267 (288)
++++++|++++|+||+++||||+++ +++.+.+.++ ++++..+|.+++.+|+.++.... ..++.... +...+..++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~ 234 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASV 234 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 5677777777 89999999999999999987655 44544433 345566666
Q ss_pred -CcCcHHHHHHhhcC
Q 023017 268 -GLDTVEEIIDSLDD 281 (288)
Q Consensus 268 -~~~~~e~~~~~lek 281 (288)
+++..+++.+|+|+
T Consensus 235 ~~~d~~eg~~af~~~ 249 (249)
T PRK05870 235 QSPEFAARLAAAQRR 249 (249)
T ss_pred cChhHHHHHHHHhcC
Confidence 67899999999985
No 53
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-51 Score=359.39 Aligned_cols=241 Identities=24% Similarity=0.340 Sum_probs=210.4
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|+.||+|.|++++... ....+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-------~~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-------FAIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-------hHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999987531 11223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHh
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL 195 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l 195 (288)
.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999966999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTV 272 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 272 (288)
+|++++|+||+++||||++ +++.+.+.++ ++++..||.++..+|+.++......++...+ +.+.+..++ +++..
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~ 231 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFK 231 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHH
Confidence 9999999999999999964 3455556566 8999999999999999998765544444433 345566666 68999
Q ss_pred HHHHHhhcCCCCCC
Q 023017 273 EEIIDSLDDVAPSY 286 (288)
Q Consensus 273 e~~~~~lekr~p~~ 286 (288)
+++.+|++||+|+|
T Consensus 232 eg~~af~~kr~p~~ 245 (248)
T PRK06072 232 EGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHhcCCCCCC
Confidence 99999999999997
No 54
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.3e-51 Score=360.20 Aligned_cols=241 Identities=20% Similarity=0.256 Sum_probs=207.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
|.++++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.. .....+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 699999999999999999999999999999999999999999997531 111223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|.. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 4455678888999999999999999999999999999999999999999999999999974 578999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH--HHHHHHHHHc-CcC
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI--HRIDIVDKCF-GLD 270 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~--~~~~~~~~~~-~~~ 270 (288)
++|++++|+||+++||||+++|+.+ ....+.+ ++++..||.+++.+|+.++......++... .+...+..++ +++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~-~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d 232 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE-NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHD 232 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHh
Confidence 9999999999999999999998643 3334444 689999999999999999876555544433 2234556666 689
Q ss_pred cHHHHHHhhcCCCCCC
Q 023017 271 TVEEIIDSLDDVAPSY 286 (288)
Q Consensus 271 ~~e~~~~~lekr~p~~ 286 (288)
..+++.+|+|||+|.|
T Consensus 233 ~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 233 AVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999999999987
No 55
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-51 Score=359.64 Aligned_cols=239 Identities=22% Similarity=0.211 Sum_probs=206.8
Q ss_pred EeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHH
Q 023017 39 EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT 118 (288)
Q Consensus 39 ~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 118 (288)
+++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++... ..........+.
T Consensus 7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 457899999999997 5999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcC
Q 023017 119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 197 (288)
Q Consensus 119 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g 197 (288)
+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +++|+++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5677888999999999999999999999999999999999999999999999985 4567899999999 99999999
Q ss_pred CCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHH
Q 023017 198 AKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEE 274 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~ 274 (288)
++++|+||+++||||+++|++++++.+.++ ++++..+|.+++.+|+.++......+..... +......++ ++|..|+
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg 239 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEH 239 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHH
Confidence 999999999999999999999998888777 8999999999999999998765544444433 345555666 6899999
Q ss_pred HHHhhcCCCC
Q 023017 275 IIDSLDDVAP 284 (288)
Q Consensus 275 ~~~~lekr~p 284 (288)
+.+|+|||+|
T Consensus 240 ~~af~ekr~p 249 (249)
T PRK07938 240 RDAFVEKRKA 249 (249)
T ss_pred HHHHHhcCCC
Confidence 9999999988
No 56
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1e-51 Score=362.77 Aligned_cols=241 Identities=30% Similarity=0.493 Sum_probs=220.2
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHH
Q 023017 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (288)
Q Consensus 37 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (288)
.++.+|+|++|+||+|++.|++|.+++.+|.++|+.+++|+++|+||++|.|+.||+|.|++++... +......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 3789999999999999999999999999999999999999999999999999999999999998764 445667788
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHh
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
+.++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTV 272 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 272 (288)
+|++++|+||+++||||+++|++++.+.+..+ ++++..++.+++.+|+.+++........... +...+..++ +++..
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQ 236 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999988888777 8999999999999999999864444444333 356777777 78999
Q ss_pred HHHHHhhcC
Q 023017 273 EEIIDSLDD 281 (288)
Q Consensus 273 e~~~~~lek 281 (288)
|++.+|+||
T Consensus 237 e~~~~f~eK 245 (245)
T PF00378_consen 237 EGIAAFLEK 245 (245)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCc
Confidence 999999998
No 57
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.5e-51 Score=375.15 Aligned_cols=253 Identities=36% Similarity=0.637 Sum_probs=217.6
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++.......+.....
T Consensus 4 ~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 4 EVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred eEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 588999999999999999999999999999999999999999999999999999 8999999999875421111111111
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 193 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l 193 (288)
.++....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++|
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~l 163 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYL 163 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHHH
Confidence 34445557888899999999999999999999999999999999999999999999999999999999999988449999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHH--------------------------------------------------
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLI-------------------------------------------------- 223 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-------------------------------------------------- 223 (288)
+++|+.++|+||+++||||+++|++++++.
T Consensus 164 lltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 243 (342)
T PRK05617 164 ALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVED 243 (342)
T ss_pred HHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999887654
Q ss_pred ------------HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhh-cC-CCCCC
Q 023017 224 ------------EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSL-DD-VAPSY 286 (288)
Q Consensus 224 ------------~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~l-ek-r~p~~ 286 (288)
+.++ ++++..+|.+++.+|+.+++............ ...+..++ ++|..+++.+|+ +| |.|+|
T Consensus 244 ~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~ 323 (342)
T PRK05617 244 IIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKW 323 (342)
T ss_pred HHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCC
Confidence 5555 89999999999999999987655555544433 45555666 789999999997 76 99988
Q ss_pred C
Q 023017 287 A 287 (288)
Q Consensus 287 ~ 287 (288)
.
T Consensus 324 ~ 324 (342)
T PRK05617 324 S 324 (342)
T ss_pred C
Confidence 4
No 58
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.1e-51 Score=375.99 Aligned_cols=254 Identities=69% Similarity=1.132 Sum_probs=214.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
.+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+.||+|+|++++......+.....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999988643212222223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..++...+++.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 44555566678889999999999999999999999999999999999999999999999999999999999999966999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCcH
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (288)
|++||++++|+||+++||||++||++++.+..+.+++++..+|.++..+|+.++............+.+.+..+|+.+..
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999986555555889889999999999998765322222333346788899976655
Q ss_pred HH-HHHh---hcCCCCCC
Q 023017 273 EE-IIDS---LDDVAPSY 286 (288)
Q Consensus 273 e~-~~~~---lekr~p~~ 286 (288)
++ +.+| .+||.|+|
T Consensus 276 ~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred HHHHHHHHhhhcccchHH
Confidence 55 4455 56667765
No 59
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.7e-51 Score=366.61 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=214.1
Q ss_pred CCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccccCChhhHHHh
Q 023017 33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYHF 103 (288)
Q Consensus 33 ~~~v~~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-------~~F~aG~Dl~~~~~~ 103 (288)
+.+|.+++ +++|++||||||+++|++|.+|+.+|.++++.+++|+++++|||+|.| ++||+|.|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 44688988 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred ---hccCCh-H--HHHHHHH-HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCC
Q 023017 104 ---MNQGKL-E--ECKDFFR-TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD 175 (288)
Q Consensus 104 ---~~~~~~-~--~~~~~~~-~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~ 175 (288)
...... . ....... ...++...+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 000000 0 0011111 12346667889999999999999999999999999999999 69999999999999999
Q ss_pred CchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCCh
Q 023017 176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDK 253 (288)
Q Consensus 176 ~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~ 253 (288)
+|++++|++++|.. +++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..++.+++.+|+.++.......
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 261 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTDDGLV 261 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccH
Confidence 99999999999999 99999999999999999999999999999998878777 89999999999999999976544333
Q ss_pred hhHHHHHHHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 254 NSVIHRIDIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
.....+.+.+..++ +++..+++.+|+|||+|+|
T Consensus 262 ~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 262 GQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 33333345555666 6899999999999999997
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-50 Score=354.78 Aligned_cols=235 Identities=21% Similarity=0.331 Sum_probs=205.2
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
+.++++++|++||||||+++|++|.+|+.+|.++++.++++ ++++|||||.|++||+|.|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 57888999999999999999999999999999999999965 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 44556788889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHc-CcCc
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVDKCF-GLDT 271 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 271 (288)
++|++++|+||+++||||+|++ ++ .+.++ ++++..+|.++..+|+.++.. ...+... .+.+.+..++ +++.
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~ 225 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDA 225 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999965 33 44445 899999999999999999865 3333332 2345666666 6899
Q ss_pred HHHHHHhhcCCCCCC
Q 023017 272 VEEIIDSLDDVAPSY 286 (288)
Q Consensus 272 ~e~~~~~lekr~p~~ 286 (288)
.+++.+|++||+|+|
T Consensus 226 ~eg~~af~~kr~p~~ 240 (243)
T PRK07854 226 IEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHhCCCCCCC
Confidence 999999999999987
No 61
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=7.5e-51 Score=362.67 Aligned_cols=254 Identities=18% Similarity=0.201 Sum_probs=216.1
Q ss_pred CccCCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CcccccCChhhHHHhh
Q 023017 28 VTDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHFM 104 (288)
Q Consensus 28 ~~~~~~~~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g--~~F~aG~Dl~~~~~~~ 104 (288)
+.|..++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++...
T Consensus 5 ~~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~- 82 (278)
T PLN03214 5 SPPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP- 82 (278)
T ss_pred CCCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc-
Confidence 3445566899998 6999999999985 7999999999999999999999999999999998 699999999987531
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccc-cCCCchHHHHh
Q 023017 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLS 183 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~ 183 (288)
.........+.....+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~ 161 (278)
T PLN03214 83 -KTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMG 161 (278)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHH
Confidence 1111222233344456778899999999999999999999999999999999999999999999999 59899999999
Q ss_pred hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H
Q 023017 184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I 260 (288)
Q Consensus 184 ~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~ 260 (288)
+++|.. +++|+++|+.++++||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.++......++..... .
T Consensus 162 ~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~ 241 (278)
T PLN03214 162 RVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEA 241 (278)
T ss_pred HhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999998888877777 89999999999999999987655444444333 4
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p 284 (288)
..+..++ ++|..+++.+|+||.+.
T Consensus 242 ~~~~~~~~s~d~~egi~aflek~~~ 266 (278)
T PLN03214 242 KGGWKMLSEPSIIKALGGVMERLSS 266 (278)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 4555566 78999999999987554
No 62
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-51 Score=369.44 Aligned_cols=252 Identities=20% Similarity=0.238 Sum_probs=205.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhh-HHHh---h-ccC
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS-LYHF---M-NQG 107 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~-~~~~---~-~~~ 107 (288)
++.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+++ +... . ..+
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999985 2110 0 000
Q ss_pred ChHHHHHH---HH---HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc-cccCCCchHH
Q 023017 108 KLEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASF 180 (288)
Q Consensus 108 ~~~~~~~~---~~---~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~g~~~ 180 (288)
.......+ .. ....++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++| ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00001111 01 11235667889999999999999999999999999999999999999999997 8875 2333
Q ss_pred HHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCC-CChhhHH
Q 023017 181 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVY-PDKNSVI 257 (288)
Q Consensus 181 ~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~-~~~~~~~ 257 (288)
+ +++|.. +++|+++|++++|+||+++||||++||++++++.+.++ ++++..+|.+++.+|+.++.... ..+....
T Consensus 162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~ 239 (298)
T PRK12478 162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQ 239 (298)
T ss_pred -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 2 458998 99999999999999999999999999999999888888 89999999999999999987544 2233333
Q ss_pred H-HHHHHHHHc-CcCcH--------HHHHHhhcCCCCCC-CC
Q 023017 258 H-RIDIVDKCF-GLDTV--------EEIIDSLDDVAPSY-AY 288 (288)
Q Consensus 258 ~-~~~~~~~~~-~~~~~--------e~~~~~lekr~p~~-~~ 288 (288)
. +...+..++ ++|.. |++.+|+|||+|+| .|
T Consensus 240 ~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~ 281 (298)
T PRK12478 240 TLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDY 281 (298)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 3 355666667 45654 59999999999999 66
No 63
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.8e-50 Score=353.81 Aligned_cols=247 Identities=17% Similarity=0.218 Sum_probs=207.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||+|.|++||+|.|++++.... ......
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~--~~~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKP--DAGRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcc--ccchhh
Confidence 567999999999999999999999999999999999999998 3599999999999999999999875421 111111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233446788889999999999999999999999999999999999999999999999999865 56799999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-Cc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GL 269 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~ 269 (288)
+++++|++++|+||+++||||+++|+++. ...+.+++++..+|.++..+|+.++.. ......... +......++ ++
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~-~~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT-LLRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADP 235 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999999999997653 223334899999999999999999764 223333332 344555666 68
Q ss_pred CcHHHHHHhhcCCCCCC
Q 023017 270 DTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 270 ~~~e~~~~~lekr~p~~ 286 (288)
+..+++.+|++||+|+|
T Consensus 236 ~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 236 ENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999999998
No 64
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=7.5e-50 Score=369.61 Aligned_cols=253 Identities=40% Similarity=0.650 Sum_probs=213.6
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++...... ....
T Consensus 10 ~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~~~~ 87 (379)
T PLN02874 10 EEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--DDSC 87 (379)
T ss_pred CCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--chHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999987532111 1122
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~ 192 (288)
..+....+.+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~ 167 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEY 167 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHH
Confidence 23334445667789999999999999999999999999999999999999999999999999999999999999866999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhH---H----------------------------------------------
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPL---I---------------------------------------------- 223 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---~---------------------------------------------- 223 (288)
|++||++++|+||+++||||++||++++.+ .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 247 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTV 247 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999888755 2
Q ss_pred ------------------HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHH-HHHHc---CcCcHHHHHHhh
Q 023017 224 ------------------EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDI-VDKCF---GLDTVEEIIDSL 279 (288)
Q Consensus 224 ------------------~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~-~~~~~---~~~~~e~~~~~l 279 (288)
+.++ +++++.+|.+++.+|+.+++.....+...... ... ...+. ++|..||+.+|+
T Consensus 248 ~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 248 EEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 1134 78999999999999999987655455444433 233 22333 679999999997
Q ss_pred -cC-CCCCCC
Q 023017 280 -DD-VAPSYA 287 (288)
Q Consensus 280 -ek-r~p~~~ 287 (288)
+| |+|+|.
T Consensus 328 idK~r~P~w~ 337 (379)
T PLN02874 328 IDKDNAPKWN 337 (379)
T ss_pred EcCCCCCCCC
Confidence 77 999984
No 65
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-49 Score=350.59 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=203.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++... .....
T Consensus 3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~~~~ 78 (258)
T PRK06190 3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD----GSAYG 78 (258)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999987531 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HH
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~ 191 (288)
. ...+++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 23456778889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHcCc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCFGL 269 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 269 (288)
+|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++......+....+. ...+..++.+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999988877777 89999999999999999987755555554443 5556666643
No 66
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-49 Score=348.64 Aligned_cols=239 Identities=19% Similarity=0.224 Sum_probs=209.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
|+..+.++.+++|++|+||+|++.|++|.+++.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ---TGK- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc---chh-
Confidence 5668899999999999999999999999999999999999999999999999999999999999999875321 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+.. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 11222 4678889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF- 267 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~- 267 (288)
++++++|++++++||+++||||+++|++++.+.+.++ ++++..++.+++.+|+.+++..........+. ...+..++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH 235 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888777777 89999999999999999988766655555443 45666777
Q ss_pred CcCcHHHHHH
Q 023017 268 GLDTVEEIID 277 (288)
Q Consensus 268 ~~~~~e~~~~ 277 (288)
+++..|++.+
T Consensus 236 ~~~~~egi~~ 245 (249)
T PRK07110 236 QPEVKRRIES 245 (249)
T ss_pred CHhHHHHHHH
Confidence 5666666654
No 67
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.3e-48 Score=358.56 Aligned_cols=247 Identities=48% Similarity=0.846 Sum_probs=214.2
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
.|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+.......
T Consensus 10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999998753211111122234
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHH
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~ 194 (288)
++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+++|+
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~ 169 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG 169 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence 44444556778899999999999999999999999999999999999999999999999999999999999998799999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCcHHH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 274 (288)
|||++++|+||+++||||++||++++.+...++.+++..+|.++...|+.+.................+.++|+.+.+++
T Consensus 170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~ 249 (381)
T PLN02988 170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE 249 (381)
T ss_pred HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999888888888888889999999998865432111233334788999999999999
Q ss_pred HHHhhcC
Q 023017 275 IIDSLDD 281 (288)
Q Consensus 275 ~~~~lek 281 (288)
|.+.|++
T Consensus 250 i~~~L~~ 256 (381)
T PLN02988 250 IISALER 256 (381)
T ss_pred HHHHHHh
Confidence 9999886
No 68
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.1e-49 Score=338.58 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=191.5
Q ss_pred CCCcEEEEee-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhcc
Q 023017 32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106 (288)
Q Consensus 32 ~~~~v~~~~~-----~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~ 106 (288)
|+++|.++.. ++|++|+||||++ |+++.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--- 76 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL--- 76 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc---
Confidence 4566777666 8999999999974 999999999999999999999999999999999999999999987532
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcc
Q 023017 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 186 (288)
.......+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++
T Consensus 77 -~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 77 -SAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred -ChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 1122223344556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 187 g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
|.. +++++++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.+++.+|+.++...
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999988877777 8999999999999999997643
No 69
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.9e-48 Score=355.62 Aligned_cols=250 Identities=68% Similarity=1.188 Sum_probs=215.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHH
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (288)
..+.|.++..+++++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|+|++++......++.+.
T Consensus 40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~ 119 (407)
T PLN02851 40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119 (407)
T ss_pred CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999865322222344
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHH
Q 023017 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191 (288)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~ 191 (288)
...++...+++.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..++
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~ 199 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE 199 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence 55677778888999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCcCc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (288)
+|++||++++|+||+++||+|+++|++++....+.+.++...++..+....+.+.................++++|+.+.
T Consensus 200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~s 279 (407)
T PLN02851 200 YLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDT 279 (407)
T ss_pred HHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998666666677777777777766666543211111223334678999999999
Q ss_pred HHHHHHhhcC
Q 023017 272 VEEIIDSLDD 281 (288)
Q Consensus 272 ~e~~~~~lek 281 (288)
+++|.+.|++
T Consensus 280 v~~I~~~L~~ 289 (407)
T PLN02851 280 VEEIIEALEN 289 (407)
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=9e-48 Score=367.28 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=215.7
Q ss_pred CCcE--EEEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCCc-ccccC
Q 023017 33 CNQV--LVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSGRA-FCAGG 95 (288)
Q Consensus 33 ~~~v--~~~~~~~v~~i~ln~p~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~vvvl~g~g~~-F~aG~ 95 (288)
+.+| .++++++|++||||||+++ |+++.+|+.+|.+++..++. |+++|+|||||.|+. ||+|.
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 4444 4566899999999999999 99999999999999999984 599999999999987 99999
Q ss_pred ChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cCcccccc-cccccccCeEEE-------eCceEEecc
Q 023017 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATP 166 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~p 166 (288)
|+.... ..+...........++++.++..+|||+||+| ||+|+||| ++|+++||+||+ +++++|++|
T Consensus 335 Dl~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~ 410 (546)
T TIGR03222 335 DALLEA----HKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLS 410 (546)
T ss_pred Cccccc----cccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCC
Confidence 998421 11111112233444568889999999999999 89999999 999999999999 899999999
Q ss_pred cccccccCCCchHHHHhhcc-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHH
Q 023017 167 ETLIGFHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEAC 241 (288)
Q Consensus 167 e~~~Gl~p~~g~~~~l~~~~-g~~-a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~ 241 (288)
|+++|++|++|++++|++++ |.. + ++++++|++++|+||+++|||++++|++++.+.+.++ ++++..+|.+++.+
T Consensus 411 e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~ 490 (546)
T TIGR03222 411 ELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGL 490 (546)
T ss_pred ccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999998 887 7 5699999999999999999999999999988877777 89999999999999
Q ss_pred HHHhhccCCCChhhH-HH-HHHHHHHHc-CcCcHH---HHHHhhcCCCCCCC
Q 023017 242 LEKYSDLVYPDKNSV-IH-RIDIVDKCF-GLDTVE---EIIDSLDDVAPSYA 287 (288)
Q Consensus 242 k~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~e---~~~~~lekr~p~~~ 287 (288)
|+.++......++.. +. +.+.+..++ ++|..| ++.+|+|||+|.|.
T Consensus 491 K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~ 542 (546)
T TIGR03222 491 EANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFD 542 (546)
T ss_pred HHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCC
Confidence 999988766655554 33 366677788 678888 89999999999994
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.1e-47 Score=367.73 Aligned_cols=253 Identities=14% Similarity=0.067 Sum_probs=215.7
Q ss_pred CCCcEEEE--eeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCC-Cccccc
Q 023017 32 LCNQVLVE--GKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSG-RAFCAG 94 (288)
Q Consensus 32 ~~~~v~~~--~~~~v~~i~ln~p~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~vvvl~g~g-~~F~aG 94 (288)
.|+++.++ ++++|++||||||+++ |+++.+|+.+|.++++.++. |+++|+|||||.| +.||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 35455554 4689999999999988 68999999999999999996 7999999999999 499999
Q ss_pred CChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-Ccccccc-cccccccCeEEEe-------CceEEec
Q 023017 95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFAT 165 (288)
Q Consensus 95 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~ 165 (288)
.|++.... .+..........+++++.++..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++
T Consensus 338 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLAH----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhcc----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 99873221 11111122334456678899999999999997 9999999 9999999999999 9999999
Q ss_pred ccccccccCCCchHHHHhhc-chHH-HHHH--HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHH
Q 023017 166 PETLIGFHPDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEA 240 (288)
Q Consensus 166 pe~~~Gl~p~~g~~~~l~~~-~g~~-a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~ 240 (288)
||+++|++|++|++++|+++ +|.. |+++ +++|++++|+||+++||||+++|++++++.+..+ +++++.+|.+++.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~ 493 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTG 493 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999998 6998 8887 5899999999999999999999999998888777 8999999999999
Q ss_pred HHHHhhccCCCChhhH-HH-HHHHHHHHc-CcCcHH---HHHHhhcCCCCCCCC
Q 023017 241 CLEKYSDLVYPDKNSV-IH-RIDIVDKCF-GLDTVE---EIIDSLDDVAPSYAY 288 (288)
Q Consensus 241 ~k~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~e---~~~~~lekr~p~~~~ 288 (288)
+|+.++......++.. +. +.+.+..++ ++|..| ++.+|+|||+|+|.+
T Consensus 494 ~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~ 547 (550)
T PRK08184 494 MEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDW 547 (550)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCC
Confidence 9999998776665555 33 356677777 578888 899999999999964
No 72
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-46 Score=336.15 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=189.6
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCcccccCChhhHHHhhccCC
Q 023017 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGK 108 (288)
Q Consensus 35 ~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~-----d~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~ 108 (288)
.|.++.+++|++|+|| |+++|++|.+|+.+|.+++++++. |+++++|||+|. |++||+|.|++++.......+
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 4566667999999996 889999999999999999999998 899999999999 799999999998753211111
Q ss_pred hHHHHHHHHHHHHHHHHHh---cCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc
Q 023017 109 LEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (288)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~---~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 185 (288)
......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 1111222222233333333 7999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHH
Q 023017 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDI 262 (288)
Q Consensus 186 ~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~ 262 (288)
+|.. +++|+++|+.++|+||+++||||+++|++++.+.+.++ ++++.. |.+....|+..+......++..... ...
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~ 255 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIW 255 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999988877777 788865 4444444444433333334443332 233
Q ss_pred HHH--HcCcCcHHHHHHhh
Q 023017 263 VDK--CFGLDTVEEIIDSL 279 (288)
Q Consensus 263 ~~~--~~~~~~~e~~~~~l 279 (288)
... ++.....+.+..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 256 VDAALQLEEKDLRTMERLV 274 (287)
T ss_pred HHHHhhcccccHHHHHHHH
Confidence 443 33566777777775
No 73
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-47 Score=340.66 Aligned_cols=216 Identities=20% Similarity=0.235 Sum_probs=188.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccC---C
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K 108 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~---~ 108 (288)
.++.|.++.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999875421100 0
Q ss_pred ----------------hHH--HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc
Q 023017 109 ----------------LEE--CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 170 (288)
Q Consensus 109 ----------------~~~--~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 170 (288)
... ...+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 000 11234556677888999999999999999999999999999999999999999999998
Q ss_pred cccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhcc
Q 023017 171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDL 248 (288)
Q Consensus 171 Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~ 248 (288)
|.+|+. ..+++++|.. |++|+++|++++|+||+++||||+++|++++.+.+.++ ++++..+|.++..+|+.+++.
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~ 244 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSA 244 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666643 3467789999 99999999999999999999999999999998888777 899999999999999999876
Q ss_pred CC
Q 023017 249 VY 250 (288)
Q Consensus 249 ~~ 250 (288)
.+
T Consensus 245 ~~ 246 (302)
T PRK08272 245 LL 246 (302)
T ss_pred HH
Confidence 43
No 74
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=335.98 Aligned_cols=224 Identities=21% Similarity=0.236 Sum_probs=190.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhc-c-----
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q----- 106 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~-~----- 106 (288)
++.+.++.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999997632110 0
Q ss_pred -----------CC-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccC
Q 023017 107 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174 (288)
Q Consensus 107 -----------~~-~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p 174 (288)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0011112234456777899999999999999999999999999999999999999999999998 5
Q ss_pred CCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCC-
Q 023017 175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYP- 251 (288)
Q Consensus 175 ~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~- 251 (288)
+ ++++++++++|.. +++|+++|+.++|+||+++||||+++|++++++.+.++ ++++..++.+++.+|+.+++....
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~ 240 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQ 240 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 4 4567789999999 99999999999999999999999999999998888777 899999999999999999876543
Q ss_pred ChhhHHH
Q 023017 252 DKNSVIH 258 (288)
Q Consensus 252 ~~~~~~~ 258 (288)
..+....
T Consensus 241 ~~~~~~~ 247 (288)
T PRK08290 241 GFRAALD 247 (288)
T ss_pred cHHHHHH
Confidence 3444333
No 75
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-46 Score=324.00 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=188.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHH
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (288)
++++.++.+++|++|||||| +.|++|.+++.+|.++++.++ +++++|||+|.|++||+|.|++++... ....
T Consensus 2 ~~~i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~ 73 (229)
T PRK06213 2 SELVSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAA 73 (229)
T ss_pred cceEEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhH
Confidence 44789999999999999998 579999999999999999998 457999999999999999999987531 2223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHH-H
Q 023017 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (288)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a 190 (288)
..+...+++++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.++..++++++|.. +
T Consensus 74 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 74 IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 445566778889999999999999999999999999999999999998 99999999999998888888899999998 9
Q ss_pred HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccC
Q 023017 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLV 249 (288)
Q Consensus 191 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~ 249 (288)
++++++|++++|+||+++||||+++|++++.+.+.++ ++++..++.++..+|+.++...
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 213 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAA 213 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777 8999999999999999997653
No 76
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=308.20 Aligned_cols=250 Identities=22% Similarity=0.298 Sum_probs=219.5
Q ss_pred CCcEEEEe----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccC
Q 023017 33 CNQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 33 ~~~v~~~~----~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 107 (288)
-.++.+++ +.+|.+|-+|||.+.|+++.-|+.+|.++++.+..|+.+|||+|++.- +.||+|+||++-..+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M---- 101 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM---- 101 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence 34566664 458999999999999999999999999999999999999999999875 999999999997654
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
...+...|++.+..++..+.++|.||||+|+|.++|||++++++||+|+|+.+++|+++|++++++|++|++++|+|.+|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCC----hhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-H
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEK----LPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-I 260 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~----l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~ 260 (288)
.. +++|++|++.+++.||...||||++|...+ ....+.++ +++..+.|.+++.+|..++...+-+....+.- .
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe 261 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEE 261 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHH
Confidence 99 999999999999999999999999998653 22335556 78999999999999999998776554444332 1
Q ss_pred HHHHHHc-CcCcHHHHHHhhcCCCCCC
Q 023017 261 DIVDKCF-GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 261 ~~~~~~~-~~~~~e~~~~~lekr~p~~ 286 (288)
....+.. ..|..|++.+|-|||+|+|
T Consensus 262 ~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 262 MCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 2222333 5789999999999999998
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=6.4e-45 Score=361.07 Aligned_cols=249 Identities=19% Similarity=0.239 Sum_probs=208.8
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ..+.....
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-~~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLF-AAPEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhc-cCCHHHHH
Confidence 577774 7999999999999999999999999999999999999999999999999999999999875321 11222334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+...+++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556667888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcC------------CHH---------HHHHHHH-------
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD------------DPS---------VIEACLE------- 243 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~------------~~~---------~~~~~k~------- 243 (288)
|+++|++++|+||+++||||+++|++++.+.+.++ ++++.. +|. +++.+|+
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~ 245 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAG 245 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988777777 677754 343 3355554
Q ss_pred -----------HhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcCCCC
Q 023017 244 -----------KYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDDVAP 284 (288)
Q Consensus 244 -----------~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lekr~p 284 (288)
.++.......+..++ +.+.+..++ +++..+++.+|+++|.-
T Consensus 246 ~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~ 299 (715)
T PRK11730 246 KHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYV 299 (715)
T ss_pred cCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 345444434444433 356666777 68899999999988643
No 78
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7e-44 Score=321.29 Aligned_cols=204 Identities=19% Similarity=0.291 Sum_probs=178.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF 122 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 122 (288)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... ........+.+.++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 455999999999999999999999999999999999999999999 69999999998764311 1222333455556678
Q ss_pred HHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCC
Q 023017 123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN 201 (288)
Q Consensus 123 ~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~ 201 (288)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHcCccceecCCCCh------------hHHHHHH-HHhhcCCHH--HHHHHHHHhhcc
Q 023017 202 GAEMMACGLATHYSVSEKL------------PLIEEEL-GKLVTDDPS--VIEACLEKYSDL 248 (288)
Q Consensus 202 a~eA~~~Glv~~vv~~~~l------------~~~~~~~-~~l~~~~~~--~~~~~k~~l~~~ 248 (288)
|+||+++||||+++|+.++ ++....+ +.+...++. +++..|.++...
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG 258 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc
Confidence 9999999999999999888 5666676 555555555 788888888763
No 79
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=302.80 Aligned_cols=254 Identities=19% Similarity=0.293 Sum_probs=218.9
Q ss_pred CCCcEEEEe---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhh--c-
Q 023017 32 LCNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM--N- 105 (288)
Q Consensus 32 ~~~~v~~~~---~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~--~- 105 (288)
.++.+.+.+ +..|.++.||||.|.|+++..|+.|+.++++.+..||++|+|||+|+|+.||+|.|+..+.... .
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 466555553 4579999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred cC-----ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHH
Q 023017 106 QG-----KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF 180 (288)
Q Consensus 106 ~~-----~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 180 (288)
++ ......+++..+++.+..+.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|+..+.|...
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 11 1234566777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHH--HHHHHhcCCCCCHHHHHHcCccceecCCC-ChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhH
Q 023017 181 YLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE-KLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSV 256 (288)
Q Consensus 181 ~l~~~~g~~--a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~ 256 (288)
+||..+|.+ ++++.+|+++|+|.||++.|||.+|+|+. ++...+..+ ..++.++|.++..+|..++...+...++.
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~s 256 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEES 256 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhh
Confidence 999999965 99999999999999999999999999974 455556666 78999999999999999987766666666
Q ss_pred HHHHHHHH--HHcCcCcHHHHHHhhcCCCCC
Q 023017 257 IHRIDIVD--KCFGLDTVEEIIDSLDDVAPS 285 (288)
Q Consensus 257 ~~~~~~~~--~~~~~~~~e~~~~~lekr~p~ 285 (288)
+.+...+. .+++.|..+.+++-++|++|.
T Consensus 257 LnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 257 LNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 66644444 344889999999999999886
No 80
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.4e-43 Score=309.51 Aligned_cols=210 Identities=16% Similarity=0.139 Sum_probs=177.4
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCcccccCChhhHHHhhccCChHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (288)
+.++.+++|++|+||||++ |+++.+|+.+|.++++.+++|++++ +||++|.|++||+|.|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5788899999999999985 9999999999999999999998865 88889999999999999986421 111222233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEe-CceEEecccccccccCCCchHHHHhhcchHH-H-H
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E 191 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a-~ 191 (288)
+...+++++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|+++++.+|++++|.. + +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44556778889999999999999999999999999999999998 5689999999999974444578899999988 7 6
Q ss_pred HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHH-HHhhcC--CHHHHHHHHHHhhcc
Q 023017 192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEEL-GKLVTD--DPSVIEACLEKYSDL 248 (288)
Q Consensus 192 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~-~~l~~~--~~~~~~~~k~~l~~~ 248 (288)
+++++|++++|+||+++||||+++|+ +++.+.+.++ ++++.. ++.++...|+.++..
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~ 219 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPE 219 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 99999999999999999999999985 5777777777 688876 556788888888643
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.5e-43 Score=347.82 Aligned_cols=246 Identities=20% Similarity=0.261 Sum_probs=207.1
Q ss_pred CCcEEEEe-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCCh
Q 023017 33 CNQVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (288)
Q Consensus 33 ~~~v~~~~-~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (288)
...+.+++ +++|++|+|||| ++.|++|.+|+.+|.++++.++.|+++|+|||+|.+ ++||+|+|++++... ...
T Consensus 4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~~ 80 (708)
T PRK11154 4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KTA 80 (708)
T ss_pred CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CCH
Confidence 34577787 789999999999 689999999999999999999999999999999875 899999999987532 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcch
Q 023017 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
.....+....++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG 160 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG 160 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcC
Confidence 222334455667888999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HH-------------hhcCCHH----------------
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GK-------------LVTDDPS---------------- 236 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~-------------l~~~~~~---------------- 236 (288)
.. |++|+++|++++|+||+++||||+++|++++.+.+.++ ++ +++.+|.
T Consensus 161 ~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (708)
T PRK11154 161 VSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAK 240 (708)
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999887777766 45 3455443
Q ss_pred ------HHHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhcC
Q 023017 237 ------VIEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLDD 281 (288)
Q Consensus 237 ------~~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~lek 281 (288)
++..+|+.++..........+. +.+.+..++ +++..+++.+|+.+
T Consensus 241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~ 293 (708)
T PRK11154 241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFAT 293 (708)
T ss_pred cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6788888888765555544443 466677777 67888899999743
No 82
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-44 Score=294.97 Aligned_cols=251 Identities=17% Similarity=0.269 Sum_probs=211.2
Q ss_pred CCCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CcccccCChhhHHHhhccC
Q 023017 32 LCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--G-RAFCAGGDIVSLYHFMNQG 107 (288)
Q Consensus 32 ~~~~v~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~--g-~~F~aG~Dl~~~~~~~~~~ 107 (288)
.++.|.+++. ++|+.|+||||+++|++.+..+.|+.+++..++.|+++.||+|||. | ..||+|.|-+.-.....=.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 4778999998 9999999999999999999999999999999999999999999985 5 7999999997543210000
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
+.+...++ .+.++-+.++++||||||.|+|+++|||-.|-+.||+.||++++.|+....++|-+-++.++..|.|.+|
T Consensus 96 ~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 2335566788999999999999999999999999999999999999999999999999888999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH-HHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID-IVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~-~~~ 264 (288)
.. |+++.+.++.++|+||+++|+||.|||-++|+++..++ +++..++|.+++..|..++...... . ...+.. -..
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DGl-a-G~q~~ag~at 251 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCDGL-A-GLQELAGNAT 251 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCchh-h-HHHHhcccce
Confidence 99 99999999999999999999999999999999877777 8999999999999999998765432 1 111111 111
Q ss_pred HHc--CcCcHHHHHHhhcCCCCCC
Q 023017 265 KCF--GLDTVEEIIDSLDDVAPSY 286 (288)
Q Consensus 265 ~~~--~~~~~e~~~~~lekr~p~~ 286 (288)
.++ ..+..|+-.+|+|||+|+|
T Consensus 252 ~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 252 LLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred EEEEechhhhhhHHHHhhccCCCh
Confidence 222 6789999999999999998
No 83
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.7e-42 Score=341.58 Aligned_cols=239 Identities=19% Similarity=0.248 Sum_probs=198.5
Q ss_pred EeeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccccCChhhHHHhhccCChHHHHHHH
Q 023017 39 EGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (288)
Q Consensus 39 ~~~~~v~~i~ln~p-~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (288)
+.+++|++|||||| ++.|++|.+|+.+|.++++.++.|+++|+||| +|.|++||+|+|++++... .+......+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 6788999999999987531 1122233445
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcchHH-HHHH
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l 193 (288)
...++++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 55677888999999999999999999999999999999999985 79999999999999999999999999999 9999
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-H-------------HhhcCCHHH----------------------
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-G-------------KLVTDDPSV---------------------- 237 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~-------------~l~~~~~~~---------------------- 237 (288)
+++|++++|+||+++||||+++|++++.+.+.++ + +++..+|.+
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a 242 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPA 242 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChh
Confidence 9999999999999999999999999888777766 3 355555555
Q ss_pred HHHHHHHhhccCCCChhhHHH-HHHHHHHHc-CcCcHHHHHHhhc
Q 023017 238 IEACLEKYSDLVYPDKNSVIH-RIDIVDKCF-GLDTVEEIIDSLD 280 (288)
Q Consensus 238 ~~~~k~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~le 280 (288)
...+|+.++..........++ +.+.+..++ +++..+.+.+|+-
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~ 287 (699)
T TIGR02440 243 AERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFA 287 (699)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334445565554444444443 366677777 6788888988863
No 84
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-42 Score=290.34 Aligned_cols=250 Identities=20% Similarity=0.286 Sum_probs=218.0
Q ss_pred CCCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChH
Q 023017 32 LCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln-~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
.+..+.+++++++..|.+| ||+|.|+++.+++.++.++++.+.+|+++..++++|.|++||+|.|+..+.....+....
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 4568999999999999999 999999999999999999999999999999999999999999999999886543322222
Q ss_pred H---HHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcch
Q 023017 111 E---CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (288)
Q Consensus 111 ~---~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 187 (288)
. ..++...+..+...+..+|||+||.|||+|+|.|..+...||+|+|+|+++|..|++++|++|++|+++.+++++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 2 2233344445788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHH-HHHHHHhhcCCHHHHHHHHHHhhccCCCChhhHH-HHHHHHH
Q 023017 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLI-EEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVI-HRIDIVD 264 (288)
Q Consensus 188 ~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-~~~~~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~ 264 (288)
.. |.+|++.|++++|+||.+.|||+++++++.+.+. ..++++++..+|.+++..|++++......+.... ++...+.
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~ 244 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLL 244 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99 9999999999999999999999999999999864 4556999999999999999999876555444443 3466666
Q ss_pred HHc-CcCcHHHHHHhhcC
Q 023017 265 KCF-GLDTVEEIIDSLDD 281 (288)
Q Consensus 265 ~~~-~~~~~e~~~~~lek 281 (288)
..| +.+..+.+.+|+.+
T Consensus 245 ~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 245 KQWVSAECLARFKQYLSK 262 (266)
T ss_pred hhccChHHHHHHHHHhcc
Confidence 666 67899999999876
No 85
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=277.46 Aligned_cols=269 Identities=20% Similarity=0.263 Sum_probs=224.5
Q ss_pred hhHHHhhhhhcccCCCCCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCc
Q 023017 11 RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA 90 (288)
Q Consensus 11 ~~~~~~~~~s~~~~~~~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~ 90 (288)
.|..-|.+...+.++.... ...+++.+++|..|+||+|+|.|+++.+|+.+|.+.+....++.++|+|||+..|+.
T Consensus 13 ~~~~~~aq~~aRf~s~~p~----~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~Gki 88 (287)
T KOG1682|consen 13 KYATGCAQQVARFTSNGPS----DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKI 88 (287)
T ss_pred hcccchHhhhHHHhhcCcc----cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCcc
Confidence 3444444444444433332 235666779999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccc
Q 023017 91 FCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 170 (288)
Q Consensus 91 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 170 (288)
||+|.||+++.. +...+...+.+....+++.-+++.|.|+|+-|||.+.++|+.|+..||++||+++++|..|..++
T Consensus 89 fSaGH~LKELt~---e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v 165 (287)
T KOG1682|consen 89 FSAGHNLKELTN---EPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV 165 (287)
T ss_pred ccccccHHHhhc---CccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce
Confidence 999999999975 34456667788889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHHHHHHHHHHhhcc
Q 023017 171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDL 248 (288)
Q Consensus 171 Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~~~~~~k~~l~~~ 248 (288)
|++...-+.. |.|.+... +.+|++||.+++++||+..|||.++||+++++.+++++ ..+-..+...+...|+.++..
T Consensus 166 GlFCSTPGvA-laRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~y~q 244 (287)
T KOG1682|consen 166 GLFCSTPGVA-LARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQ 244 (287)
T ss_pred eeEecCcchh-HhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9977665544 78888888 99999999999999999999999999999999888888 788888888999999888766
Q ss_pred CCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhhcCCCCCCC
Q 023017 249 VYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSLDDVAPSYA 287 (288)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~lekr~p~~~ 287 (288)
......++... .+..-.-| -.|..|||.+|+|||.|+|.
T Consensus 245 ~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~~ 285 (287)
T KOG1682|consen 245 LAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNWK 285 (287)
T ss_pred HHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCcC
Confidence 44333222222 33333334 47999999999999999984
No 86
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-41 Score=294.09 Aligned_cols=255 Identities=51% Similarity=0.829 Sum_probs=229.6
Q ss_pred CCCccCCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhh
Q 023017 26 SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFM 104 (288)
Q Consensus 26 ~~~~~~~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~ 104 (288)
++.+.+..+.|.++.++....||||||++.|++|.+|+..+.-.|..++.++.+++||+.|.| +.||+|+|+.......
T Consensus 30 ~~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~ 109 (401)
T KOG1684|consen 30 SSVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI 109 (401)
T ss_pred cccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh
Confidence 334444567899999999999999999999999999999999999999999999999999985 9999999999777666
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhh
Q 023017 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 184 (288)
.++.......++...+.+...+.++.||.||.++|-.+|||++|..+--||||+|++.|.+||+.+|++|+.|++++|+|
T Consensus 110 ~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsr 189 (401)
T KOG1684|consen 110 KDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSR 189 (401)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhh
Confidence 67777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-HhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHH
Q 023017 185 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (288)
Q Consensus 185 ~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~-~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 263 (288)
++|..+.||.|||.++++.||+.+||.++.|+.++|....+++. .+...+...+..+.+.+...............+.+
T Consensus 190 lpg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i 269 (401)
T KOG1684|consen 190 LPGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVI 269 (401)
T ss_pred CccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHH
Confidence 99977999999999999999999999999999999988777774 66666668899999998776544444444557899
Q ss_pred HHHcCcCcHHHHHHhhc
Q 023017 264 DKCFGLDTVEEIIDSLD 280 (288)
Q Consensus 264 ~~~~~~~~~e~~~~~le 280 (288)
.+||+.+.+|+|++.|.
T Consensus 270 ~~~Fs~~tVeeIie~lk 286 (401)
T KOG1684|consen 270 NKCFSANTVEEIIEALK 286 (401)
T ss_pred HHhhccccHHHHHHHHH
Confidence 99999999999999663
No 87
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8.1e-41 Score=331.22 Aligned_cols=192 Identities=20% Similarity=0.293 Sum_probs=173.1
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHH
Q 023017 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (288)
Q Consensus 35 ~v~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (288)
.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 577775 78999999999999999999999999999999999999999999999999999999998853211 1222333
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHH
Q 023017 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (288)
Q Consensus 114 ~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~ 192 (288)
.+.+..++++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555667888999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
|+++|++++|+||+++||||+++|++++.+.+..+
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~ 200 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQL 200 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHH
Confidence 99999999999999999999999998887766555
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=6.4e-41 Score=284.10 Aligned_cols=190 Identities=33% Similarity=0.512 Sum_probs=174.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
+.+++++++++|+||+|++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++..... ..+...++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~--~~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSD--AGEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccc--cchhHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999875321 11135677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHH
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~ 194 (288)
.+.+++++.++..+|||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|++++|++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
++|++++++||+++||||++++++++.+.+.++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 999999999999999999999998877666555
No 89
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.5e-41 Score=320.71 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=175.4
Q ss_pred CccCCCCcEEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCcccccC
Q 023017 28 VTDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGS-GRAFCAGG 95 (288)
Q Consensus 28 ~~~~~~~~v~~~~~~~v~~i~ln~p~----------~~N~l~~~~~~~l~~~l~~~~-~d~~v~vvvl~g~-g~~F~aG~ 95 (288)
|.|+.++++.++++++|++|+||||+ |+|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|.
T Consensus 5 ~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 5 TEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 44556788999999999999999975 899999999999999999999 7899999999987 58999999
Q ss_pred ChhhHHHhhccCChHHHHHHH-HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEeccccc-cc
Q 023017 96 DIVSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IG 171 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~G 171 (288)
|++++.... .........+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|
T Consensus 85 DL~~~~~~~-~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG 163 (546)
T TIGR03222 85 NIFMLGLST-HAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG 163 (546)
T ss_pred CHHHHhccc-cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence 999875311 00011111111 11233455678899999999999999999999999999999986 799999997 99
Q ss_pred ccCCCchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCH
Q 023017 172 FHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDP 235 (288)
Q Consensus 172 l~p~~g~~~~l~--~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~ 235 (288)
++|++|++.++. +.+|.. |++|+++|++++|+||+++||||+++|++++++.+.++ ++++..+|
T Consensus 164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSD 231 (546)
T ss_pred cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCC
Confidence 999999998887 688998 99999999999999999999999999999998877777 78887766
No 90
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.3e-40 Score=328.71 Aligned_cols=182 Identities=21% Similarity=0.346 Sum_probs=165.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCcccccCChhhHHHhhccCChH
Q 023017 33 CNQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFV-SMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vv-vl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (288)
++.+.++++++|++||||+|+ +.|++|.+++.+|.++++.++.|+++|++ |++|.|++||+|+|++++... .+..
T Consensus 12 ~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~ 88 (737)
T TIGR02441 12 RTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQ 88 (737)
T ss_pred CCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChH
Confidence 457899999999999999998 68999999999999999999999999965 579999999999999998531 1223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEecccccccccCCCchHHHHhhcchH
Q 023017 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGH 188 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 188 (288)
....+....++++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|.
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~ 168 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV 168 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH
Confidence 34455566778899999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 189 L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 189 ~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
. |++|+++|++++|+||+++||||+++|+
T Consensus 169 ~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 169 PAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 8 9999999999999999999999999986
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.2e-39 Score=312.34 Aligned_cols=206 Identities=14% Similarity=0.169 Sum_probs=172.9
Q ss_pred cCCCCcEEEEeeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CcccccCCh
Q 023017 30 DDLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSG-RAFCAGGDI 97 (288)
Q Consensus 30 ~~~~~~v~~~~~~~v~~i~ln~p-------~---~~N~l~~~~~~~l~~~l~~~~-~d~~v~vvvl~g~g-~~F~aG~Dl 97 (288)
+..++++.++++++|++|+|||| + +.|+++.+|+.+|.++++.++ +++++++|||+|.+ ++||+|.|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 34577899999999999999965 3 899999999999999999999 78999999999975 899999999
Q ss_pred hhHHHhhccCChHHHHHHHHH-HHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCc--eEEeccccc-cccc
Q 023017 98 VSLYHFMNQGKLEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFH 173 (288)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~ 173 (288)
+.+.... .........+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSS-HAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccc-cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9874311 0000011111111 123455678899999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HHhhcCCHH
Q 023017 174 PDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPS 236 (288)
Q Consensus 174 p~~g~~~~l~--~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~-~~l~~~~~~ 236 (288)
|++|++.+++ +++|.. +++|+++|+.++|+||+++||||+++|++++.+.+.++ ++++..+|.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 779998 99999999999999999999999999999888777666 788777664
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.83 E-value=1.2e-20 Score=157.69 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 62 ~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
.+.+|.++++.+++|+++++|||++ +|.|.|+.... .+.+++..+..++||+||+++|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGNA 82 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCch
Confidence 4789999999999999999999997 58888775421 233466677889999999999999
Q ss_pred cccccccccccCeEEEeCceEEecccccccccCCCchHH--------HHhhcch--HH-HHHHHhcCCCCCHHHHHHcCc
Q 023017 142 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACGL 210 (288)
Q Consensus 142 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~~~~g--~~-a~~l~l~g~~~~a~eA~~~Gl 210 (288)
.|+|+.|+++||++++++++.|+++.+..+.-+...... .+++..| .. .++++..|..++|++|++.||
T Consensus 83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL 162 (177)
T cd07014 83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL 162 (177)
T ss_pred hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence 999999999999999999999999988766433322222 3444444 55 788889999999999999999
Q ss_pred cceecCCCChh
Q 023017 211 ATHYSVSEKLP 221 (288)
Q Consensus 211 v~~vv~~~~l~ 221 (288)
||++.+.+++.
T Consensus 163 VD~v~~~~e~~ 173 (177)
T cd07014 163 VDSLGSFDDAV 173 (177)
T ss_pred cccCCCHHHHH
Confidence 99999866543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.83 E-value=2.8e-20 Score=156.72 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 45 ~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
++|+++. .++..+...+.+.++.+++++ ++.|+|.=. |-|+++..- ..++.
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~~ 52 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIVQ 52 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence 4566653 266777888999999998665 777777632 444444321 13455
Q ss_pred HHhcCCCcEEEEEc---CcccccccccccccCeEEEeCceEEecccccccccCCC--------------chHHHHhhcch
Q 023017 125 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLPG 187 (288)
Q Consensus 125 ~l~~~~kp~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~~~~g 187 (288)
.+..+|||||++|+ |+|.|+|+.|+++||++|++++++|+.++...+..+.. +....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999999 99999999999999999999999999999985554433 23557888888
Q ss_pred H--H-HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 023017 188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 188 ~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
. . +.+++++|+.++|+||+++||||++++++
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 7 5 89999999999999999999999999875
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.69 E-value=8.5e-17 Score=138.10 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=82.5
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 43 NSRMAILNRP--SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 43 ~v~~i~ln~p--~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
+|++|.++.+ +..+.-+...+.+|.++|+.+..||++++|||+ .||.|.|+..+.. +.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~ 60 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR 60 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence 3555666533 122333455689999999999999999999998 6899999976531 22
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEec
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~ 165 (288)
+.+..+..++||+||+++|.|.|+|+.|+++||++++++++.|+.
T Consensus 61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 345667888999999999999999999999999999999988874
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.61 E-value=3.9e-15 Score=122.36 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++.+..+|.+.|+.++.|+.+++|+|... |.|.|+... ..+...+..++||+|+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~----s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN----TPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE----CCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 566889999999999999999999999874 666665432 124445667789999999
Q ss_pred cCcccccccccccccCeEEEeCceEEecccccccccCCCchH------HHH----hh---------cchHH-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FYL----SH---------LPGHL-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l----~~---------~~g~~-a~~l~l~g 197 (288)
+|.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+ .+ ..... ..+++..+
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999998876554322000 111 11 12222 46677789
Q ss_pred CCCCHHHHHHcCcccee
Q 023017 198 AKLNGAEMMACGLATHY 214 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~v 214 (288)
..++++||++.||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999975
No 96
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.59 E-value=1.2e-14 Score=125.13 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 51 RPSALNA-LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 51 ~p~~~N~-l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
++...|+ ++..++.+|.++|+++++|+++++|||+. +|.|.++... ..+.+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~- 72 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA- 72 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc-
Confidence 4444454 45788999999999999999999999986 3566554332 122233344444
Q ss_pred CCcEEEEEcCcccccccccccccCeEEEeCceEEecccc
Q 023017 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168 (288)
Q Consensus 130 ~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 168 (288)
+|||||+++|.|.|+|+.++++||++++++++.|+...+
T Consensus 73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence 699999999999999999999999999999999875443
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.58 E-value=1.5e-14 Score=141.13 Aligned_cols=171 Identities=17% Similarity=0.214 Sum_probs=122.6
Q ss_pred eeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHH
Q 023017 40 GKANSRMAILNRPS--ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (288)
Q Consensus 40 ~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (288)
.+++|++|+++.+= ..+..+....+.+.+.|+++..|+++|+|||+-. |.|++.... +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 46789999998652 2343444446678899999999999999999965 222222110 1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEE------eccc------ccccccCCCchHHHHhh-
Q 023017 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH- 184 (288)
Q Consensus 118 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~~- 184 (288)
.+.+.+.++...+||||+.++|.|.+||+.++++||.++|.+.+.+ +.+. .++|+.|....+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1223444566778999999999999999999999999999998877 5452 47888877655543332
Q ss_pred ---------------------------cc------hHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHHhh
Q 023017 185 ---------------------------LP------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV 231 (288)
Q Consensus 185 ---------------------------~~------g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~l~ 231 (288)
.+ .....+.+.+|+.++++||+++||||++. .+++....+++++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~~~Ai~~a~~la 522 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GLDEAVAKAAKLA 522 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CHHHHHHHHHHHc
Confidence 22 22256677899999999999999999994 4555555556666
Q ss_pred cC
Q 023017 232 TD 233 (288)
Q Consensus 232 ~~ 233 (288)
..
T Consensus 523 ~~ 524 (584)
T TIGR00705 523 HC 524 (584)
T ss_pred CC
Confidence 65
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.55 E-value=3.1e-14 Score=121.99 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
|++|.++.+=... ++.++.+|.+.|+.++.|+++++|+|++. |.|.|+.... .+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHHH----------------HHHHHH
Confidence 5566666441001 36789999999999999999999999994 7888876421 123456
Q ss_pred HHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecc
Q 023017 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166 (288)
Q Consensus 124 ~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p 166 (288)
..+..++||+||+++|.|.|+|+.|+++||++++++.+.|+..
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 6677889999999999999999999999999999999988653
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.54 E-value=2.6e-14 Score=117.43 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
.+...+.+.|+.+..++.+ .+.|.+.|+...+| ..+...+..+|||+|+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~-------------------------~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAG-------------------------LAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHH-------------------------HHHHHHHHhcCCCEEEEEcch
Confidence 4677888889988877443 45556665443322 135556777899999999999
Q ss_pred ccccccccccccCeEEEeCceEEecccccccccCCCch---------------HHHHhhcch--HH-HHHHHhcCCCCCH
Q 023017 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPG--HL-GEFLALTGAKLNG 202 (288)
Q Consensus 141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~~~~g--~~-a~~l~l~g~~~~a 202 (288)
|.|+|+.++++||+|++++++.|+++....|..+.... ...+.+..| .. ..+++..+..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999998877665443221 223666677 45 7777777788999
Q ss_pred HHHHHcCcccee
Q 023017 203 AEMMACGLATHY 214 (288)
Q Consensus 203 ~eA~~~Glv~~v 214 (288)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999985
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.49 E-value=2.9e-13 Score=115.91 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
|++|+++.+ ++ ....+|.+.|+.+.+|+++++|||++. |.|.++... .++.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 556666543 11 236789999999999999999999985 777766532 1233
Q ss_pred HHHhcCC--CcEEEEEcCcccccccccccccCeEEEeCceEEeccccc------------ccccC---------CCc---
Q 023017 124 YLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHP---------DAG--- 177 (288)
Q Consensus 124 ~~l~~~~--kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p---------~~g--- 177 (288)
..+..++ ||+||+++|.|.|+|+.|+++||.+++++++.|+...+. +|+-+ ..+
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3444555 999999999999999999999999999999887764332 23311 000
Q ss_pred --hH----HHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 178 --AS----FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 178 --~~----~~l~-----------------~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
.+ ..+. |.+.....+=++.|+.+++++|++.||||++...+++
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~ 198 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA 198 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence 00 0111 1122221122468899999999999999999755443
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.41 E-value=2.1e-12 Score=107.69 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 023017 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (288)
Q Consensus 45 ~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (288)
.+|.++. .+++.....|.+.|+.+++++ ++.|+|.=. |.|+++.. ...+..
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 4455543 366788888999999999886 667776654 44444432 224566
Q ss_pred HHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCch--------HHH------HhhcchH--
Q 023017 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGH-- 188 (288)
Q Consensus 125 ~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~~~~g~-- 188 (288)
.+..+|+|+|+.|+|.|.++|+.++++||++++++++.|+.++. ++..|. ... +.+.-|+
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 67889999999999999999999999999999999999998844 333332 111 2222332
Q ss_pred H-HHHHHhcC-------------CCCCHHHHHHcCccceecCC
Q 023017 189 L-GEFLALTG-------------AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 189 ~-a~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~ 217 (288)
. +..|+-.. -.++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 2 45554443 26999999999999999865
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.36 E-value=2.9e-12 Score=110.89 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
-+..++.+|.+.|+++..|+++++|||+..+..| ++.++.++ .+.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 3456789999999999999999999999987666 55555444 234444566799999999
Q ss_pred cCcccccccccccccCeEEEeCceEEecccc
Q 023017 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPET 168 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 168 (288)
+| |.++|+.|+++||.+++.+.+.|+...+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeecc
Confidence 98 8899999999999999999999998544
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.99 E-value=4.8e-09 Score=86.78 Aligned_cols=136 Identities=11% Similarity=0.205 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++.+...|.+.++.++++ .++.|+|.=. |.|+.+... ..++..+...++||++.|
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIYV 65 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEEE
Confidence 6677888899999999865 4677777654 444444321 124445667899999999
Q ss_pred c---CcccccccccccccCeEEEeCceEEecccccccccCC----Cch----HHH------HhhcchH--H-HHHHHhcC
Q 023017 138 N---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----AGA----SFY------LSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~----~g~----~~~------l~~~~g~--~-a~~l~l~g 197 (288)
. |.|..+|..++++||.+++.+++.++......|..+. ..- ... +.+.-|+ . +..++-..
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999988875432120 000 111 2222332 2 66777788
Q ss_pred CCCCHHHHHHcCccceecCC
Q 023017 198 AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~ 217 (288)
..++++||++.|++|.++.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCcCHHHHHHcCCceeeeCC
Confidence 88999999999999999876
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.86 E-value=2.7e-08 Score=81.82 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++..+..++.+.|..++.++..+.++|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 567889999999999998877776666644 44443321 1134555667889999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchHH---------------HHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.++|..++++|| .|++.+++.|.+.....|......-.. .+.+..|. . ..+++-.+
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 9999999999999999 688888888876543322211000001 11111221 1 34455566
Q ss_pred CCCCHHHHHHcCcccee
Q 023017 198 AKLNGAEMMACGLATHY 214 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~v 214 (288)
..++|+||++.||||++
T Consensus 146 ~~~sa~eA~~~GliD~i 162 (162)
T cd07013 146 TWLSAREAVEYGFADTI 162 (162)
T ss_pred ccccHHHHHHcCCCCcC
Confidence 66799999999999985
No 105
>PRK10949 protease 4; Provisional
Probab=98.86 E-value=3.3e-08 Score=97.05 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=105.7
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHH
Q 023017 41 KANSRMAILNRP-----SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (288)
Q Consensus 41 ~~~v~~i~ln~p-----~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (288)
.+.|++|.++.+ ...+.++. +.+.+.|+++..|+++|+|||+-. |.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH----------------
Confidence 567888887632 22234443 567888999999999999999976 33332211
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccc------------cccccCCCchH----
Q 023017 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGAS---- 179 (288)
Q Consensus 116 ~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~---- 179 (288)
.+.+.+.+.+++...||+||.+.|.|..||+.++++||.++|.+.+..+...+ ++|+-+..-.+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 12233444456667899999999999999999999999999999766554332 23332211100
Q ss_pred -------------HHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHH
Q 023017 180 -------------FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229 (288)
Q Consensus 180 -------------~~l~-----------------~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~ 229 (288)
..+. |.+.....+-+..|+.+++++|++.||||++.. +++....+++
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~---~~~ai~~a~~ 538 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGD---FDDAVAKAAE 538 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCC---HHHHHHHHHH
Confidence 0011 111111112246899999999999999999965 4444444444
Q ss_pred hhc
Q 023017 230 LVT 232 (288)
Q Consensus 230 l~~ 232 (288)
++.
T Consensus 539 ~a~ 541 (618)
T PRK10949 539 LAK 541 (618)
T ss_pred HcC
Confidence 443
No 106
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.81 E-value=4.2e-08 Score=83.45 Aligned_cols=139 Identities=15% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
..++.++...+...|..++.++..+-|.|.=. |.|+++.. ...++..+...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEE
Confidence 33788999999999998886654343443322 33333322 11244456677889999
Q ss_pred EEcCccccccccccccc--CeEEEeCceEEecccccccccCCCch---------------HHHHhhcchH--H-HHHHHh
Q 023017 136 ILNGVTMGGGAGVSIPG--TFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPGH--L-GEFLAL 195 (288)
Q Consensus 136 av~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~~~~g~--~-a~~l~l 195 (288)
.+.|.|.+.|..|++++ +.|++.+++.|.+....-|......- ...+....|. . ...++-
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 174 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTD 174 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 99999999999998874 35777777777665543222100000 0112233333 2 445556
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.+..++|+||++.||||+|+.+
T Consensus 175 ~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 175 RDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred CCccccHHHHHHcCCccEEeec
Confidence 6788999999999999999875
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.77 E-value=4.3e-09 Score=94.84 Aligned_cols=168 Identities=19% Similarity=0.061 Sum_probs=137.5
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHHHH
Q 023017 43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121 (288)
Q Consensus 43 ~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 121 (288)
++..++++ |+ .|..|.++..+|..-++.++.+..+++..+|+.. +.|++|.|..+... +.......++-++++
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv----g~h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV----GMHFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc----cccccCHHHHHHHHH
Confidence 67778888 54 6999999999999999999999999999999987 89999999988753 233344455667788
Q ss_pred HHHHHhcCCCcEEEEEcCcccccc--cccccccCeEEEe--CceEEecccccccc-cCCCchHHHHhhcchHH-HHHHHh
Q 023017 122 FIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVAC--GKTVFATPETLIGF-HPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 122 l~~~l~~~~kp~Iaav~G~a~GgG--~~lal~~D~~ia~--~~a~f~~pe~~~Gl-~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
++....+++.|+.+++||++-.|+ +.++.+|+|++.. ..-..+..+..+++ .|++ -.-.+...+|.. +.+-+-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~-~iD~~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPW-LIDSLITKFGFRVGERALA 218 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHH-HHHHHHHhcCccccHHHHh
Confidence 999999999999999999999998 8899999999998 45555788888884 4433 333445556766 555667
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-+.-++..||++-|+++++.|+
T Consensus 219 d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 219 DGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hccCccHHHHHhhccchhccch
Confidence 7899999999999999999985
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.70 E-value=1.8e-07 Score=79.91 Aligned_cols=136 Identities=14% Similarity=0.054 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.++..+..++.+.|..++.++..+.+.|.=. |.|+++..- ..++..+..++.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 3788999999999999987653444444332 333333221 13455566778899999
Q ss_pred EcCcccccccccccccC--eEEEeCceEEecccccc-cccCCCchH------------------HHHhhcchH--H-HHH
Q 023017 137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGAS------------------FYLSHLPGH--L-GEF 192 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~~~~g~--~-a~~ 192 (288)
+.|.|.+.|..|+++|| .|++.+++.|.+..... |. ..|.. ..+....|. . ..+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 59999999999877642 21 11211 122333333 2 455
Q ss_pred HHhcCCCCCHHHHHHcCccceecCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
++-.+..++|+||++.||||+|+++
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCc
Confidence 6667889999999999999999875
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.64 E-value=1.5e-07 Score=78.12 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.+...++...+..++.++..+.++|.=. |.|+|+..- ..++..+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 678889999999999998765555555433 333333221 123444556789999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchHHH-----------------HhhcchH--H-HHHHHh
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GEFLAL 195 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~--~-a~~l~l 195 (288)
.|.|.++|..+++++| .|++.+++.|.+.+...+..-. .... +....|. . ...++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999998876543222 1111 1111222 2 345555
Q ss_pred cCCCCCHHHHHHcCcccee
Q 023017 196 TGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~v 214 (288)
.+..++++||+++||+|+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7888999999999999986
No 110
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.62 E-value=5.4e-06 Score=72.88 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++. .+-+|-|.-.++.+. |.+-. .....+.+.+.+..+...+.|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 3567888999999999988755 466676665544442 32211 01123455567777889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.|-|.|.|||......||++++.+++.++. +.|.+++..+....--.. +.+.. ++++.++++.|+||+
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK 210 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence 9999999999888888999999999887763 334443333332211112 44442 789999999999999
Q ss_pred ecCCC
Q 023017 214 YSVSE 218 (288)
Q Consensus 214 vv~~~ 218 (288)
|+|..
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99853
No 111
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.57 E-value=2.7e-07 Score=77.35 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
+|.++...+.+.|..++.++..+ .+.|.+ .|+|+... ..+...+..++.|+++
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~g-------------------~~i~~~i~~~~~~v~t 79 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDAG-------------------LAIYDAIRSSKAPVTT 79 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHHH-------------------HHHHHHHHHSSSEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHHH-------------------HHHHHHHHhcCCCeEE
Confidence 88999999999888775333223 233344 44444321 2355567788999999
Q ss_pred EEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH---------------HhhcchH--H-HHHHHh
Q 023017 136 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFLAL 195 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~~~~g~--~-a~~l~l 195 (288)
.+.|.|.+.|..++++||. |++.+++.|.+.+...+.......... +....|. . ..+++-
T Consensus 80 ~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 159 (182)
T PF00574_consen 80 VVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD 159 (182)
T ss_dssp EEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred EEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 9999999999999999999 899999999999886555331111100 1111121 1 244444
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
...-++|+||+++||+|+|+.+
T Consensus 160 ~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 160 RDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp STEEEEHHHHHHHTSSSEEESS
T ss_pred CCccccHHHHHHcCCCCEeccC
Confidence 5566899999999999999854
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.55 E-value=6.7e-07 Score=75.82 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+++++...+.+.|..++..+..+.|.|.=. |.|+++..- ..++..|...+.||++.+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence 778889999999988876333344444432 333333221 134555667899999999
Q ss_pred cCcccccccccccccCe--EEEeCceEEecccccccccCCCchH---------------HHHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.+.|..|+++||- |++.+++.|.+....-|......-. ..+....|. . ...++-..
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d 168 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD 168 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence 99999999999999985 9999999887766543321111100 011122232 1 34445556
Q ss_pred CCCCHHHHHHcCccceecCC
Q 023017 198 AKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~~ 217 (288)
..++|+||+++||+|+|+++
T Consensus 169 ~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 169 FWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cccCHHHHHHcCCccEeecC
Confidence 78999999999999999975
No 113
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.53 E-value=7.6e-06 Score=73.73 Aligned_cols=138 Identities=13% Similarity=0.063 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++. .+-+|-|.-.++.++ |.+-.+ ....+.+.+.+..+.....|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 3557899999999999998865 356666655444443 321111 1123445566677889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.|-|.|.|||......||++++.+++.++. +.|.++++.++...--.. |.+. -+++|+++++.|+||+
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~~~a~~aA~~----~~ita~dL~~~giiD~ 266 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDSKKSLDAAEA----LKITSEDLKVLGIIDE 266 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcchhhHHHHHHH----cCCCHHHHHhCCCCeE
Confidence 9999999888865555699999999988773 345555444333222212 3333 5899999999999999
Q ss_pred ecCC
Q 023017 214 YSVS 217 (288)
Q Consensus 214 vv~~ 217 (288)
|+|.
T Consensus 267 ii~E 270 (322)
T CHL00198 267 IIPE 270 (322)
T ss_pred eccC
Confidence 9974
No 114
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.50 E-value=1.4e-06 Score=79.21 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 63 GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 63 ~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
.+.+.+.|+.+..|++++.|+|.=. |.|+.... .+.+.+.++++..-. ||++.|++.|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a----------------s~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA----------------SELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH----------------HHHHHHHHHHHhhcC-CEEEEECCeec
Confidence 5666788888899999999998754 33332221 122334444454444 99999999999
Q ss_pred ccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhc-------------------------------------
Q 023017 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL------------------------------------- 185 (288)
Q Consensus 143 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~------------------------------------- 185 (288)
.||..++++||.+||++.+..|--.+..+. |.. ..++-++
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988865554442 211 1212111
Q ss_pred ------------chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHH
Q 023017 186 ------------PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229 (288)
Q Consensus 186 ------------~g~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~~~ 229 (288)
.... ...-+.+|+-+++++|++.||||++.. +++....+++
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~---~~~av~~~~~ 271 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG---LDDAVKDAAE 271 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC---HHHHHHHHHH
Confidence 0000 112356899999999999999999964 3444444433
No 115
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.48 E-value=1.5e-05 Score=71.82 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.++++-.....+.++.+++- .+-+|-|.-.+++++ |.+-.+ ....+.+.+.+..+.....|+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~Is 194 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVIC 194 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEEE
Confidence 567889999999999988754 466666665444443 221111 11234556677778899999999
Q ss_pred EEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 023017 136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~-a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
.|-|.|.|||......||++++.+++.++. +.|.++++. |-+-... . +.+. -++++.++++.|+||+
T Consensus 195 VViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~I-l~kd~~~a~~aae~----~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAI-LWKDASKAPKAAEA----MKITAPDLKELGLIDS 263 (316)
T ss_pred EEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHH-hccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence 999999777776555799999999987762 344444433 4332211 1 3332 5678999999999999
Q ss_pred ecCC
Q 023017 214 YSVS 217 (288)
Q Consensus 214 vv~~ 217 (288)
|+|.
T Consensus 264 II~e 267 (316)
T TIGR00513 264 IIPE 267 (316)
T ss_pred eccC
Confidence 9974
No 116
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.48 E-value=2e-06 Score=73.00 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
+|.++..++...|-.++.++..+-+.|.=. |.|+++.. ...++..+...+.|+...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEEE
Confidence 899999999999999885543444443322 33333321 1135555777899999999
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchH-----------------HHHhhcchHH---HHHHHh
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS-----------------FYLSHLPGHL---GEFLAL 195 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~-----------------~~l~~~~g~~---a~~l~l 195 (288)
.|.|.+.|..|++++| -|++.++++|.+.....|+.-+. +. ..+....|.. ..+++-
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999 69999999999888765521111 11 1112222321 345556
Q ss_pred cCCCCCHHHHHHcCccceecCCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
....++|+||+++||||+|+.+.
T Consensus 175 r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeecC
Confidence 66779999999999999998754
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.47 E-value=2.5e-06 Score=71.99 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
++.++..++...|..++.++..+-+.|.=. |.|+|+..- ..++..+...+.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 778888889998888887654444444432 334443221 124444566677788888
Q ss_pred cCcccccccccccccC--eEEEeCceEEecccccccccCCCchH---------------HHHhhcchH--H-HHHHHhcC
Q 023017 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG 197 (288)
Q Consensus 138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~~g~--~-a~~l~l~g 197 (288)
.|.|.+.|..+++++| .|++.+++.|.+.+...|......-. ..+.+..|. . ..+++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999998888665 69999999999977654432211111 112233333 2 45566677
Q ss_pred CCCCHHHHHHcCccceecC
Q 023017 198 AKLNGAEMMACGLATHYSV 216 (288)
Q Consensus 198 ~~~~a~eA~~~Glv~~vv~ 216 (288)
..++|+||+++||+|+|+.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 8899999999999999974
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.44 E-value=1.7e-05 Score=73.29 Aligned_cols=137 Identities=14% Similarity=0.068 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
..++++-.....+.++.+++. .+-+|-|.-.+++++ |.+-++ ....+.+.+.+..+.....|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~p-G~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAYA-GIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCC-CHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 458899999999999988865 366666655444432 221111 12234566677788999999999
Q ss_pred EEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 023017 136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l~g~~~~a~eA~~~Glv~~v 214 (288)
.|-|.+.+||.....+||++++.+++.++. +.|.++++.++....-.. +.+. -.++|.++++.|+||+|
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAea----lkitA~dL~~~GiID~I 334 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAEA----LRITAAELVKLGVVDEI 334 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHHH----cCCCHHHHHhCCCCeEe
Confidence 999999666654445689999999887652 344454444433322222 3332 38999999999999999
Q ss_pred cCC
Q 023017 215 SVS 217 (288)
Q Consensus 215 v~~ 217 (288)
+|.
T Consensus 335 I~E 337 (431)
T PLN03230 335 VPE 337 (431)
T ss_pred ccC
Confidence 974
No 119
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.42 E-value=2.4e-05 Score=76.76 Aligned_cols=137 Identities=13% Similarity=0.016 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-+++++-.....+.++.++.. .+-+|-|.-.+++++ |....+ ....+.+.+.+..+.....|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 3467788888889988888754 356666655444443 222221 1223556677788889999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH--HHHHHhcCCCCCHHHHHHcCccc
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLAT 212 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~--a~~l~l~g~~~~a~eA~~~Glv~ 212 (288)
+.|-|.|.|||......||+++|.+++.++. +.|.+++ ..|-+-.... |.+ .-+++|++++++|+||
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaA-sILwkd~~~A~eAAe----~lkiTa~dL~~lGiiD 353 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACA-AILWKSAKAAPKAAE----KLRITAQELCRLQIAD 353 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHH-HHHhcCcccHHHHHH----HcCCCHHHHHhCCCCe
Confidence 9999999888887777799999999887652 3444444 4343332222 333 3589999999999999
Q ss_pred eecCC
Q 023017 213 HYSVS 217 (288)
Q Consensus 213 ~vv~~ 217 (288)
+|+|.
T Consensus 354 ~IIpE 358 (762)
T PLN03229 354 GIIPE 358 (762)
T ss_pred eeccC
Confidence 99984
No 120
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.39 E-value=1.3e-06 Score=79.19 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=92.3
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (288)
++.|++|.++.+=..+ -...+-+++...+..+..+ ..|||+-. |.|+....... ..
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~----------------a~ 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL----------------AA 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH----------------HH
Confidence 4678888887542111 1123345566656555433 46777654 33333221100 00
Q ss_pred HHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCch----------------------
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------------- 178 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------------- 178 (288)
..+.++....||+++.+++.|..||+.++++||.++|.+.+.++...+-.. .|....
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence 113345667899999999999999999999999999999888876554211 111100
Q ss_pred -----H----HHHhhcch---------------HHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 179 -----S----FYLSHLPG---------------HLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 179 -----~----~~l~~~~g---------------~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
+ ..+...+. ..-.+-+.+|+.+++++|++.||||++...+++
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0 00111110 011222468999999999999999999765543
No 121
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.30 E-value=1.6e-05 Score=71.68 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-.++++-.....+.++.+++- .+-+|-|.-.+++++ |.+-.+ ....+.+.+.+..+.....|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 3557889999999999888754 466777766544444 322211 1123555677788899999999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCcccee
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~v 214 (288)
+.|-|.|.|||......||++++.+++.++ +.++-|....|-+-... +.+..- .-.+++.++++.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 999999988877655569999999988776 43434444444433222 222211 456899999999999999
Q ss_pred cCC
Q 023017 215 SVS 217 (288)
Q Consensus 215 v~~ 217 (288)
+|.
T Consensus 265 I~E 267 (319)
T PRK05724 265 IPE 267 (319)
T ss_pred ccC
Confidence 974
No 122
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.27 E-value=9.5e-06 Score=69.72 Aligned_cols=137 Identities=11% Similarity=0.045 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vv--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 133 (288)
-.+|..+...+...|..++..+.-+-+ .|-+.|+...+| ..++..|...+-||
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG-------------------------laIyd~m~~~~~~V 115 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG-------------------------LGIYDTMQFISSDV 115 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH-------------------------HHHHHHHHhcCCCE
Confidence 347888888888887777643322322 334444443333 12445567788999
Q ss_pred EEEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH---------------HHhhcchHH---HHHH
Q 023017 134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFL 193 (288)
Q Consensus 134 Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~~---a~~l 193 (288)
...+.|.|.+.|..|++++|. |++.++++|.+.....|......-.. .+.+..|.. ..+.
T Consensus 116 ~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 116 ATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999996 99999999998776544322111010 011223321 3445
Q ss_pred HhcCCCCCHHHHHHcCccceecCC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
+-....++|+||++.||||+|+..
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 566778999999999999999864
No 123
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.25 E-value=0.00019 Score=62.45 Aligned_cols=156 Identities=12% Similarity=-0.002 Sum_probs=93.6
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~-~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.=|.|. ..++.+-.....+.+... +.+.++-+|.|.-.++.. .|.. .+.....+.+
T Consensus 30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~-~g~~-------------aE~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQA-YGRR-------------EELLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-CCHH-------------HHHHHHHHHH
Confidence 3443334445553 278878888888888885 555777777766543222 2211 1122223333
Q ss_pred HHHHHH---HhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHh
Q 023017 120 YSFIYL---LGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL 195 (288)
Q Consensus 120 ~~l~~~---l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l 195 (288)
.+++.. +...+.|+|+.|-|.++|||+. +.+.+|.++|.+++.++ ..++-++...+-+-... ..++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~~~-~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSVEE-LEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCHhH-HHHHHH
Confidence 444444 4456699999999999988774 55568888887666554 55555555444443332 222221
Q ss_pred c--CCCCCHHHHHHcCccceecCCCCh
Q 023017 196 T--GAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 196 ~--g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
. --..+.+.+.++|+||+|+++.+-
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 1 124677789999999999987653
No 124
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.25 E-value=0.0001 Score=65.27 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=93.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 54 ALNALNTNMGAKLNKLFKAWEND----PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d----~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
..-+++...-..+..+++.+.+| ..+-+|.|.-+ +|..+.+-. .....+. .+.....+++..
T Consensus 71 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----gGaRlqEg~--------~~L~~~a-~i~~~~~~ls~~ 136 (274)
T TIGR03133 71 QGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-----GGVRLQEAN--------AGLIAIA-EIMRAILDARAA 136 (274)
T ss_pred cCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-----CCcChhhhH--------HHHHHHH-HHHHHHHHHhCC
Confidence 45678888889999999999762 12346666653 344443211 1111111 122223334454
Q ss_pred CCcEEEEEcCc--ccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH--H-HHHHHhcCCCCCHHH
Q 023017 130 LKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLALTGAKLNGAE 204 (288)
Q Consensus 130 ~kp~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~--~-a~~l~l~g~~~~a~e 204 (288)
.|+|+.+.|+ |.||+..++.+||++|+++++.+++. +........|. . ..+-.|..+.+.++.
T Consensus 137 -vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~ 204 (274)
T TIGR03133 137 -VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKH 204 (274)
T ss_pred -CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhcccccccchHh
Confidence 9999999999 89999999999999999998877652 22223333442 2 555566677788888
Q ss_pred HHHcCccceecCCCC
Q 023017 205 MMACGLATHYSVSEK 219 (288)
Q Consensus 205 A~~~Glv~~vv~~~~ 219 (288)
....|++|.+++++.
T Consensus 205 ~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 205 RFLSGDADVLVEDDV 219 (274)
T ss_pred HhhcccceEEeCCHH
Confidence 888999999998754
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.23 E-value=1.5e-05 Score=67.63 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGF--VSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~v--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.++.++...+...|-.++.++.-+- +.|-+.|+...+| ..++..|...+-||.
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G-------------------------laIyd~m~~~~~~V~ 89 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG-------------------------LAIYDTMRYIKAPVS 89 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH-------------------------HHHHHHHHhcCCCEE
Confidence 4888999999888888876433222 2334444332222 135556777888999
Q ss_pred EEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHH
Q 023017 135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF 192 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~ 192 (288)
..+.|.|.+.|..|++++|- |++.+++++.+.....|.. +-...+ +.+..|.. -.+
T Consensus 90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999995 9999999999888765541 111111 11223321 344
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
++-....++|+||++.||||+|+++..
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccCC
Confidence 455667799999999999999997644
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.21 E-value=1.5e-05 Score=67.35 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 136 (288)
.+|.+...++...|..++.++..+-+.+.=. |.|+++..- ..++..|...+-||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 3889999999999999986543343443322 333333211 13455566778899999
Q ss_pred EcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHH---------------HHhhcchHH---HHHHHhc
Q 023017 137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFLALT 196 (288)
Q Consensus 137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~~g~~---a~~l~l~ 196 (288)
+.|.|.+.|..|++++|- |++.++++|.+.....|..-...-.. .+.+..|.. ..+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 88999999988776533211111011 111222321 3444556
Q ss_pred CCCCCHHHHHHcCccceecCCC
Q 023017 197 GAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 197 g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
...++|+||++.||+|+|++..
T Consensus 170 d~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccC
Confidence 6779999999999999999764
No 127
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.13 E-value=2.5e-05 Score=68.33 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.+.++.+...++.++++...++..+ .++|...|+ ++.. ..++...+.+++.|++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG------~v~A-------------------A~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGG------LVDA-------------------AEQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCC------cHHH-------------------HHHHHHHHHhCCCCEE
Confidence 4668889999999999998877655 455555433 2211 1235556778899999
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHH
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF 180 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 180 (288)
+.|+..|+.+|..++++||-+++.+++.+|--+..+|-.|..+...
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil~ 168 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASILK 168 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHHH
Confidence 9999999999999999999999999999999999999988654433
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.10 E-value=9.9e-05 Score=66.20 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=100.2
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-|.+. ..-+++....+.+.++++.+.+. .+-+|.|.-.| |+.+.+ + ...... ....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~-~ak~ 183 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQ-MAKT 183 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHh-HHHH
Confidence 4444444455554 66889999999999999999866 47788887654 333322 0 001111 1222
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
...+.++.....|.|+.+.|+|.||+.. +++.+|++|+.+++.+++-.. ..+...++ .++ ..+
T Consensus 184 ~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~---e~l--pe~ 247 (292)
T PRK05654 184 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR---EKL--PEG 247 (292)
T ss_pred HHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh---hhh--hhh
Confidence 3344456677899999999999999664 577899999999887776322 11111112 111 112
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
--+++-+.+.|+||.|+++.++.....++
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~ 276 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHRRELRDTLASL 276 (292)
T ss_pred hcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence 23567778899999999998887655555
No 129
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.07 E-value=6.5e-05 Score=67.35 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~----~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (288)
..-+++......+..+++.+.++. -+-+|.|.-.| |..+.+-. .....+ ..+...+..++..
T Consensus 80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~--------~~L~~~-a~i~~~~~~ls~~ 145 (301)
T PRK07189 80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEAN--------AGLAAI-AEIMRAIVDLRAA 145 (301)
T ss_pred cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchH--------HHHHHH-HHHHHHHHHHhCC
Confidence 567788999999999999998765 25667766643 33333211 111111 1222233334555
Q ss_pred CCcEEEEEcCc--ccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchH--H-HHHHHhcCCCCCHHH
Q 023017 130 LKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLALTGAKLNGAE 204 (288)
Q Consensus 130 ~kp~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~--~-a~~l~l~g~~~~a~e 204 (288)
.|+|+.+.|+ |+||+...+.+||++|+++++.+++. +........|. . ..+-.+.++.+.+..
T Consensus 146 -VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~~vw~~lGG~h 213 (301)
T PRK07189 146 -VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKH 213 (301)
T ss_pred -CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhcccccccCcce
Confidence 9999999999 99999999999999999998877652 12222222331 1 444444444455555
Q ss_pred HHHcCccceecCCCC
Q 023017 205 MMACGLATHYSVSEK 219 (288)
Q Consensus 205 A~~~Glv~~vv~~~~ 219 (288)
....|.+|.+++++.
T Consensus 214 ~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 214 RYLSGLADALVDDDV 228 (301)
T ss_pred eeecccceEEeCCHH
Confidence 566999999998764
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.02 E-value=0.00023 Score=63.56 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=99.2
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHH
Q 023017 41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (288)
Q Consensus 41 ~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (288)
+|.-..|.-+++. ..-+++....+.+.++++.+.+. .+-+|.|...|+. -+.+ +. ...... ...
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~-ak~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------AL-LSLMQM-AKT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------ch-hHHHhH-HHH
Confidence 4443334444443 56789999999999999999754 4678888775443 2221 11 111111 222
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccccccc-cccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCC
Q 023017 120 YSFIYLLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 198 (288)
Q Consensus 120 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~ 198 (288)
...+.++.....|.|+++.|+|.||+.. +++.+|++||.+++.+++-..+ .+...+|. + +.-+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e---~--lpe~ 246 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE---K--LPEG 246 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC---c--cchh
Confidence 2344456677899999999999999654 5679999999999888763322 12222221 1 1112
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
--+++-+.+.|+||.|+++.++.....++
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r~~l~~~ 275 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMKKTLASL 275 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence 23566677899999999998877655544
No 131
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.92 E-value=5.9e-06 Score=67.35 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccc------------ccc---------cCCCc-----hH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGF---------HPDAG-----AS 179 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl---------~p~~g-----~~ 179 (288)
+....||+||.++|.|..+|+.|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 34679999999999999999999999999999999888875543 222 11111 00
Q ss_pred ----HHHhhc-----------------chHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 023017 180 ----FYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (288)
Q Consensus 180 ----~~l~~~-----------------~g~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 220 (288)
..+.+. +.....+-+..|..+++++|++.||||++...+++
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~ 143 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence 001111 11111112578999999999999999999654443
No 132
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.84 E-value=0.00016 Score=71.22 Aligned_cols=85 Identities=13% Similarity=-0.055 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 62 ~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
.+.++.+.|+++.+|+.|++|||.-.+ +.|..+..+ +.+.+.+..+....|||||..++.+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~~ 137 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNYS 137 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEcccc
Confidence 577999999999999999999999752 123333221 2233344456667899999988775
Q ss_pred cccccccccccCeEEEeCceEEecc
Q 023017 142 MGGGAGVSIPGTFRVACGKTVFATP 166 (288)
Q Consensus 142 ~GgG~~lal~~D~~ia~~~a~f~~p 166 (288)
-+|+.|+.+||-+++.+.+.+++.
T Consensus 138 -s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 138 -QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred -chhhhhhhhCCEEEECCCceEEee
Confidence 678999999999999998877653
No 133
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.82 E-value=0.00073 Score=60.39 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH-HhcCCCc
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL-LGTHLKP 132 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~kp 132 (288)
..-+++...-+.+.++++.+.+.. +-+|++... +|+-+.+-. ..+..+.+ ....+.+ ......|
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~S-----GGARmQEg~--------~sL~qmak-~saa~~~~~~~~~vP 209 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNES-LPLIIVCAS-----GGARMQEGS--------LSLMQMAK-ISSALYDYQSNKKLF 209 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECC-----CCccccccc--------hhhhhhHH-HHHHHHHHHHcCCCC
Confidence 567899999999999999998654 677887774 444443211 01111111 1111222 2256799
Q ss_pred EEEEEcCccccccccc-ccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCcc
Q 023017 133 HVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLA 211 (288)
Q Consensus 133 ~Iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv 211 (288)
.|+.+.|+|.||+... ++.||++|+.+++.+++... ......+|.. +.-+--+++-.++.|+|
T Consensus 210 ~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-----lpe~fq~ae~l~~~G~v 273 (296)
T CHL00174 210 YISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-----VPEGSQAAEYLFDKGLF 273 (296)
T ss_pred EEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-----CCcccccHHHHHhCcCc
Confidence 9999999999998865 67799999987877664322 1111112211 11122356667889999
Q ss_pred ceecCCCChhHHHHHH
Q 023017 212 THYSVSEKLPLIEEEL 227 (288)
Q Consensus 212 ~~vv~~~~l~~~~~~~ 227 (288)
|.+|++.++......+
T Consensus 274 D~iV~r~~lr~~l~~l 289 (296)
T CHL00174 274 DLIVPRNLLKGVLSEL 289 (296)
T ss_pred eEEEcHHHHHHHHHHH
Confidence 9999988877655544
No 134
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.66 E-value=0.0016 Score=63.04 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=100.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|++. ..-+++++..+...+.++.+++ ..+-+|.|.-.++ |..|.+- +....++...+++..
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~-------------E~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQ-------------EYGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHH-------------HHHHHHHHHHHHHHH
Confidence 3334443 3456999999999999998875 4577777776544 4444221 112234455677888
Q ss_pred HhcCCCcEEEEEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhh-cch----HH-H--HHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----HL-G--EFL 193 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g----~~-a--~~l 193 (288)
+.....|.|+.|-|.+.|||+.-.. .+|+++|.+++.++ +.++-++...+-+ .+. .. + ..+
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8899999999999999888654333 38999998887665 3333333332221 110 01 1 111
Q ss_pred -HhcCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 023017 194 -ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226 (288)
Q Consensus 194 -~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~ 226 (288)
-..-+..++..+.+.|+||.|+++.+.......
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~ 490 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVN 490 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHH
Confidence 112234578899999999999999877654433
No 135
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.64 E-value=0.0018 Score=62.60 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=87.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccC--ChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCC
Q 023017 54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131 (288)
Q Consensus 54 ~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 131 (288)
..-+++......+.++++.+.++. +-+|.|.- |+|. .+.+... ....+.+ +..-..++.. ..
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~-i~~~~~~~~~-~i 132 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGR-IFRAIARLSG-GI 132 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHH-HHHHHHHHHT-TS
T ss_pred ecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHH-HHHHHHHHhc-CC
Confidence 667899999999999999998764 56666665 4444 4443221 1111122 2233344556 99
Q ss_pred cEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHH-----
Q 023017 132 PHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM----- 205 (288)
Q Consensus 132 p~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA----- 205 (288)
|+|+++.|+|.|||..++..||++|+.++ +.+++. |+...+. .+|+.++.++.
T Consensus 133 P~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv~~-~~Ge~~~~~~lgG~~~ 191 (493)
T PF01039_consen 133 PQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVVES-ATGEEVDSEELGGADV 191 (493)
T ss_dssp -EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHHHH-HHSSCTSHHHHHBHHH
T ss_pred CeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccccccc-ccCccccchhhhhhhh
Confidence 99999999999999999999999999986 666532 1111111 34677777653
Q ss_pred --HHcCccceecCCCC
Q 023017 206 --MACGLATHYSVSEK 219 (288)
Q Consensus 206 --~~~Glv~~vv~~~~ 219 (288)
...|.+|.++++++
T Consensus 192 h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 192 HAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHTSSSSSEEESSHH
T ss_pred hcccCCCceEEEechH
Confidence 46899999998764
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0012 Score=61.51 Aligned_cols=148 Identities=10% Similarity=0.135 Sum_probs=105.3
Q ss_pred eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccccCChhhHHHhhccCChHHHHHHHHH
Q 023017 40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT 118 (288)
Q Consensus 40 ~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 118 (288)
-++.|..+.++. .+++.+.+.+.+.++.++++.. -++||.= +++. +.+.
T Consensus 24 ~~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG------------------------l~~s 73 (436)
T COG1030 24 AEKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG------------------------LLDS 73 (436)
T ss_pred cCCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc------------------------hHHH
Confidence 355677777754 4999999999999999997763 3344332 1111 1234
Q ss_pred HHHHHHHHhcCCCcEEEEEc---CcccccccccccccCeEEEeCceEEecccccccc---cCCCc-hHHH------Hhhc
Q 023017 119 LYSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFY------LSHL 185 (288)
Q Consensus 119 ~~~l~~~l~~~~kp~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~------l~~~ 185 (288)
+.++.+.+.+.|.|++..+. ++|..+|..++++||+..+++.+.++--..-.+- .+... .... +++.
T Consensus 74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~ 153 (436)
T COG1030 74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE 153 (436)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence 55788889999999888884 4799999999999999999999988865543222 11111 1111 2233
Q ss_pred chH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 023017 186 PGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 186 ~g~--~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
-|+ . |.+++.....++++||++.|++|-+..+
T Consensus 154 ~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 154 RGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred cCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 333 2 7889999999999999999999988654
No 137
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00043 Score=58.29 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 58 LNTNMGAKLNKLFKAWENDPNIGFVSM--KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 58 l~~~~~~~l~~~l~~~~~d~~v~vvvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
++..+...+...+-.++.++..+-+.| -+.|+...+|. .++..|...+.||..
T Consensus 36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~-------------------------AIydtm~~ik~~V~t 90 (200)
T COG0740 36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL-------------------------AIYDTMQFIKPPVST 90 (200)
T ss_pred echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH-------------------------HHHHHHHhcCCCeEE
Confidence 444455555555555555544444444 45566666552 245557788999999
Q ss_pred EEcCcccccccccccccCeE--EEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHHH
Q 023017 136 ILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEFL 193 (288)
Q Consensus 136 av~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~l 193 (288)
.+-|.|...|..|++++|.. ++.+++++-+....-|+ -+. ++-. +....|.. -...
T Consensus 91 i~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G~-a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d 168 (200)
T COG0740 91 ICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QGQ-ASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKD 168 (200)
T ss_pred EEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-ccC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 99999999999999999986 88888888776665333 211 1110 11112221 1222
Q ss_pred HhcCCCCCHHHHHHcCccceecCCCC
Q 023017 194 ALTGAKLNGAEMMACGLATHYSVSEK 219 (288)
Q Consensus 194 ~l~g~~~~a~eA~~~Glv~~vv~~~~ 219 (288)
.-....++|+||+++||+|+|....+
T Consensus 169 ~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 169 TDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred hcccccCCHHHHHHcCCcceeccccc
Confidence 33556699999999999999987654
No 138
>PRK10949 protease 4; Provisional
Probab=97.58 E-value=0.00054 Score=67.66 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
-.+.++.++|+++.+|+.|++|||.-.+. .|..+.. .+.+.+.+..+....||+||. ...
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~----------------~~eI~~ai~~fk~sGKpVvA~-~~~ 154 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS----------------MQYIGKALREFRDSGKPVYAV-GDS 154 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH----------------HHHHHHHHHHHHHhCCeEEEE-ecC
Confidence 34568999999999999999999998631 1222211 122334455566778999986 444
Q ss_pred ccccccccccccCeEEEeCceEEeccc
Q 023017 141 TMGGGAGVSIPGTFRVACGKTVFATPE 167 (288)
Q Consensus 141 a~GgG~~lal~~D~~ia~~~a~f~~pe 167 (288)
+.-+++.|+.+||-+++.+.+.+++..
T Consensus 155 ~~s~~YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 155 YSQGQYYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred ccchhhhhhhhCCEEEECCCceEEEee
Confidence 456789999999999999988776543
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.53 E-value=0.0016 Score=55.93 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
..+.++.+.+...|-.++.++..+ -+-|-+.|+...+|-=+.... ....++..|...+-|+.
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~----------------~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET----------------EAFAICDTMRYIKPPVH 111 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc----------------cHHHHHHHHHhcCCCeE
Confidence 445558888888888887544323 234456666555551111110 11234555667788899
Q ss_pred EEEcCcccccccccccccCe--EEEeCceEEecccccccccCCCchHHH-----------------HhhcchHH---HHH
Q 023017 135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF 192 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~~~~g~~---a~~ 192 (288)
..+-|.|.+.+..|++++|- |++.++++|.+.....|.. +-..-+ +....|.. -.+
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~ 189 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK 189 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999995 9999999999887764432 111111 11112211 123
Q ss_pred HHhcCCCCCHHHHHHcCccceecCCC
Q 023017 193 LALTGAKLNGAEMMACGLATHYSVSE 218 (288)
Q Consensus 193 l~l~g~~~~a~eA~~~Glv~~vv~~~ 218 (288)
.+-....++|+||+++||||+|+.+.
T Consensus 190 d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 190 DTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 33445669999999999999998653
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.33 E-value=0.0039 Score=60.42 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=82.7
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-+... +.-+++....+.+.++++.+.++. +-+|.|.-.| |+.+.+-. .....+.+.+... .
T Consensus 86 v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~--------~~l~~~~~~~~~~-~- 149 (512)
T TIGR01117 86 AFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAV--------DALKGYGDIFYRN-T- 149 (512)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccc--------hhhhhHHHHHHHH-H-
Confidence 3334433 567889999999999999998765 5666666533 33332210 0011111111111 1
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCce-EEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~e 204 (288)
...-..|.|+++.|+|.||+......||++|+.+++ .+.+ + +...+.. .+|+.++++|
T Consensus 150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~----------a-GP~vv~~----------~~Ge~v~~e~ 208 (512)
T TIGR01117 150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI----------T-GPQVIKT----------VTGEEVTAEQ 208 (512)
T ss_pred HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe----------c-ChHHHHh----------hcCcccchhh
Confidence 123458999999999999998887899999999853 3443 1 1111211 3345555544
Q ss_pred H-----H--HcCccceecCCCC
Q 023017 205 M-----M--ACGLATHYSVSEK 219 (288)
Q Consensus 205 A-----~--~~Glv~~vv~~~~ 219 (288)
. . .-|.+|.+++++.
T Consensus 209 lGGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 209 LGGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred cchHHHhccccceeEEecCChH
Confidence 4 2 5899999988754
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.17 E-value=0.013 Score=57.44 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|.+. +.-+++......+.++++.+.+.. +-+|.|.-.|+.+-.+ ....+. ....+ -.+..-..+
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~-g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHF-GRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHH-HHHHHHHHH
Confidence 3344443 568899999999999999998654 6677776644433211 000010 00011 111122233
Q ss_pred HhcCCCcEEEEEcCcccccccccccccCeEEEeCc-eEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHH
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~e 204 (288)
+.....|.|+++-|+|.|||......||++|++++ +.+.+ + +...+.. .+|+.++++|
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~----------a-GP~vV~~----------~~Ge~v~~ee 259 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL----------A-GPPLVKA----------ATGEEVSAED 259 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe----------c-CHHHHHh----------hcCcccCHHH
Confidence 55667999999999999999999999999999874 44443 1 1111111 3455556555
Q ss_pred H-----H--HcCccceecCCCC
Q 023017 205 M-----M--ACGLATHYSVSEK 219 (288)
Q Consensus 205 A-----~--~~Glv~~vv~~~~ 219 (288)
. + ..|.+|.+++++.
T Consensus 260 LGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred hCCHHHhcccccccccccCchH
Confidence 4 2 3788888887754
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.04 E-value=0.006 Score=53.42 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.-++..-.=+.+.++++.+-.+. +.+|+++.+ .|+-+.+-. -.+.+ .......+.++.....|.|
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aS-----GGARMQEg~--------lSLMQ-MaktsaAl~~l~ea~lpyI 199 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDK-LPLVLFSAS-----GGARMQEGI--------LSLMQ-MAKTSAALKRLSEAGLPYI 199 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCEEEEecC-----cchhHhHHH--------HHHHH-HHHHHHHHHHHHhcCCceE
Confidence 46677777788999999887654 788888884 454443311 00111 2334456677888999999
Q ss_pred EEEcCccccc-ccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCccce
Q 023017 135 AILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213 (288)
Q Consensus 135 aav~G~a~Gg-G~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~~~a~eA~~~Glv~~ 213 (288)
+.+..+..|| -..+++..|+.||.++|.++|..-++ +-+...+= |--.--+++-.++.|+||.
T Consensus 200 sVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV---------------IEQTire~-LPegfQ~aEfLlehG~iD~ 263 (294)
T COG0777 200 SVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV---------------IEQTIREK-LPEGFQTAEFLLEHGMIDM 263 (294)
T ss_pred EEecCCCccchhHhHHhccCeeecCcccccccCcchh---------------hhhhhccc-CCcchhhHHHHHHcCCcee
Confidence 9999999988 45799999999999888877654331 11111111 1111234567789999999
Q ss_pred ecCCCChhHHHHHH
Q 023017 214 YSVSEKLPLIEEEL 227 (288)
Q Consensus 214 vv~~~~l~~~~~~~ 227 (288)
||++.++......+
T Consensus 264 iv~R~elr~tla~l 277 (294)
T COG0777 264 IVHRDELRTTLASL 277 (294)
T ss_pred eecHHHHHHHHHHH
Confidence 99998776655444
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.94 E-value=0.00092 Score=58.88 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHH-HHHHHh
Q 023017 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 195 (288)
Q Consensus 117 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~-a~~l~l 195 (288)
+.+.+-+..+.+++.|+||.|=|---+||.--...+|.+.+-++++|+. +.|.++++.++...--.. |.+
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~ka~eAAe--- 245 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASKAKEAAE--- 245 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhhhHHHHH---
Confidence 3444555668899999999999988777765556679999999999983 677777665443322222 333
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 023017 196 TGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
.-.++|++++++|+||.|+|.
T Consensus 246 -~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 -AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred -HcCCCHHHHHhCCCcceeccC
Confidence 358999999999999999974
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.10 E-value=0.047 Score=52.91 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred EEEcCCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPSAL-NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~~~-N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.=|+|... -.++++-.....+.+...+. .++-+|.|.-. ..|..|- ..+.....+...+++..
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~-------------~~E~~g~~~~ga~~~~a 362 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGP-------------EAERAGIIRAGARLLYA 362 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SH-------------HHHHTTHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccc-------------hhhhcchHHHHHHHHHH
Confidence 344555422 26999999999999998886 45778887753 2233331 12223345667788999
Q ss_pred HhcCCCcEEEEEcCccccccccccccc----CeEEEeCceEEecccccccccCCCchHHHHhhcc-------h--HHH--
Q 023017 126 LGTHLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-------G--HLG-- 190 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~-------g--~~a-- 190 (288)
+..+..|+|..|-|.+.|||..-.... |+++|.+++.++ +.++-++...+.+.- | ..+
T Consensus 363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHH
Confidence 999999999999999999887544444 788887777766 433333333332211 0 000
Q ss_pred -HHHHh-cCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 023017 191 -EFLAL-TGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (288)
Q Consensus 191 -~~l~l-~g~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~ 227 (288)
..+-- .-+.-++-.+...|++|.++++.+........
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~ 474 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA 474 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 01100 11225788899999999999998876544443
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.58 E-value=0.2 Score=49.24 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-+++.+-.....+.++..++ -++-+|.|.-.++ |..|.+-+ .....+...+++..+.....|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E-------------~~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSE-------------ASGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHH-------------HhhHHHHHHHHHHHHHhCCCCEEE
Confidence 45888888888888888875 4577777765433 44443222 223456677889999999999999
Q ss_pred EEcCccccccccccc----ccCeEEEeCceEEecccccccccCCCchHHHHhhc-c------h------HH-H-HH-H-H
Q 023017 136 ILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------G------HL-G-EF-L-A 194 (288)
Q Consensus 136 av~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~------g------~~-a-~~-l-~ 194 (288)
.|-|.|+|+|..-.. ..|++++.+++.+ |+.++-++...+.+. + | .. + ++ + -
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i-------~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNARI-------GVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCCeE-------EecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998764443 5677777766554 555555555444431 1 0 00 0 00 0 1
Q ss_pred hcCCCCCHHHHHHcCccceecCCCChhH
Q 023017 195 LTGAKLNGAEMMACGLATHYSVSEKLPL 222 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 222 (288)
..-+..++-.+...|+||.|+++.+-..
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR~ 545 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADTRR 545 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHHHH
Confidence 1122456677889999999999876544
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.077 Score=46.14 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEc--CCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 023017 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKG--SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (288)
Q Consensus 57 ~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g--~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 134 (288)
.+|.++.+.+...|-.++.++.-|-+.+.- .|+...+|+ .++..+..++-||=
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl-------------------------AIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL-------------------------AIYDTMQYIKPDVS 154 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh-------------------------hHHHHHHhhCCCce
Confidence 488899999999998898777777666654 344443332 13334445555665
Q ss_pred EEEcCcccccccccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHH---------------------
Q 023017 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL--------------------- 193 (288)
Q Consensus 135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l--------------------- 193 (288)
..+=|.|.+-|..|..+ .+++-++.+|..++=+.-+.|+..==..=+-.+|+|+
T Consensus 155 Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 55667777766555443 3456677777776555322222110000000012222
Q ss_pred ----HhcCCCCCHHHHHHcCccceecCC
Q 023017 194 ----ALTGAKLNGAEMMACGLATHYSVS 217 (288)
Q Consensus 194 ----~l~g~~~~a~eA~~~Glv~~vv~~ 217 (288)
+-.-+-++|+||++.||+|+|++.
T Consensus 230 i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 123345899999999999999863
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.15 E-value=0.13 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred EEEEEcC-CCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 023017 45 RMAILNR-PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (288)
Q Consensus 45 ~~i~ln~-p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (288)
..+-.|. +.+.-++.+-....+.++.+.+.++.. -+|.|.- |+|+.+.+-.. .... + -.+..-.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~d-----sgGari~~~v~-----~l~g---~-g~iF~~~ 157 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGL-PVIGLND-----SGGARIQEGVP-----SLAG---Y-GRIFYRN 157 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCC-CEEEEEc-----ccccccccCcc-----cccc---c-hHHHHHH
Confidence 4444444 347788888888888999998887654 3444443 33444432110 0000 1 1111122
Q ss_pred HHHhcCCCcEEEEEcCcccccccccccccCeEEEeCce
Q 023017 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161 (288)
Q Consensus 124 ~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a 161 (288)
.+++.. .|.|++|-|+|.|||..+...||++|+.++.
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 334444 9999999999999999999999999999974
No 148
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=94.58 E-value=0.19 Score=38.92 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHH-HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc-CcCcHHHHHHhh--cCCCCCCCC
Q 023017 224 EEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF-GLDTVEEIIDSL--DDVAPSYAY 288 (288)
Q Consensus 224 ~~~~-~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~l--ekr~p~~~~ 288 (288)
+... +.+...+|.++..+.+.+++.....+.+.+.. ..+...++ .+|+.||+++-| +.+.|+..|
T Consensus 33 a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 33 AQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence 3334 78889999999999999998877777666554 66666666 689999999997 336677644
No 149
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.92 E-value=3.4 Score=40.09 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=93.6
Q ss_pred cCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhc
Q 023017 50 NRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 128 (288)
Q Consensus 50 n~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 128 (288)
|.|. ..-+|+.+....-.+.++ +.+..++-.|.|.-. ..|..|-+-+. ...++...+++..+..
T Consensus 331 Nqp~~~~G~l~~~sa~KaArFI~-~cd~~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A~ae 395 (526)
T COG4799 331 NQPRHLGGVLDIDSADKAARFIR-LCDAFNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYAVAE 395 (526)
T ss_pred cCccccccccchHHHHHHHHHHH-hhhccCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhhHhh
Confidence 5553 556799999988888884 444456777776543 55777755432 3345666789999999
Q ss_pred CCCcEEEEEcCcccccccccc----cccCeEEEeCceEEecccccccccCCCchHHHHhh-cchHH-H--H-H------H
Q 023017 129 HLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL-G--E-F------L 193 (288)
Q Consensus 129 ~~kp~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-~~g~~-a--~-~------l 193 (288)
+.+|.|..|-|.++|||.... +.+|+.+|.+++.++ +.-+-|+...+.+ .+... . . + +
T Consensus 396 atVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia-------VMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~ 468 (526)
T COG4799 396 ATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA-------VMGPEGAVSILYRKELAAAERPEEREALLRKQL 468 (526)
T ss_pred ccCCeEEEEecccccceeeeecCccCCCceeEecCcceee-------ecCHHHHHHHHHHHHhhcccCchhHHHHHHHHH
Confidence 999999999999999998543 446777666666555 4322333333332 11111 0 0 0 0
Q ss_pred --HhcCCCCCHHHHHHcCccceecCCCChh
Q 023017 194 --ALTGAKLNGAEMMACGLATHYSVSEKLP 221 (288)
Q Consensus 194 --~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 221 (288)
-+.-+-.++--|.+.|++|.|+++.+..
T Consensus 469 ~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR 498 (526)
T COG4799 469 IAEYEEQFSNPYYAAERGYIDAVIDPADTR 498 (526)
T ss_pred HHHHHHhccchHHHHHhCCCCcccCHHHHH
Confidence 0111223455667889999999876543
No 150
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=91.58 E-value=6.2 Score=37.40 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=98.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 023017 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (288)
Q Consensus 47 i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (288)
|.-|+|+ ..-.|..+.-....+.++... +..+-.|.|...++ |-.|.+.+..+ ..+....++..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~g-------------IaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAGG-------------IAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhhc-------------hhhhhhhhhhh
Confidence 3335554 345677777777777777665 44577777777666 88887776532 22344567888
Q ss_pred HhcCCCcEEEEEcCcccccccc---cccccCeEEEeCceEEecccccccccCCCchHHHHhh-----cc--hHHHHHHHh
Q 023017 126 LGTHLKPHVAILNGVTMGGGAG---VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-----LP--GHLGEFLAL 195 (288)
Q Consensus 126 l~~~~kp~Iaav~G~a~GgG~~---lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~-----~~--g~~a~~l~l 195 (288)
......|-|..+.|.+.||-.. ..+.-|+.++.++|++++-..+ ++...+.+ .. +....+.+
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh-
Confidence 8899999999999999997654 4577899999988888754332 11112222 12 22233333
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHH
Q 023017 196 TGAKLNGAEMMACGLATHYSVSEKLPLIE 224 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~~ 224 (288)
|.++. |...||+|.|+++.+.....
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR~vl 514 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTRKVL 514 (536)
T ss_pred -cCccH---HHHhhccccccChhHhhHHH
Confidence 66665 35789999999988765543
No 151
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=80.76 E-value=5.8 Score=37.53 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=44.5
Q ss_pred HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc----CcCcHHHHHHhh--cCCCCCCC
Q 023017 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF----GLDTVEEIIDSL--DDVAPSYA 287 (288)
Q Consensus 228 ~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~----~~~~~e~~~~~l--ekr~p~~~ 287 (288)
+.+...+|.++..+.+.+++.....+.+.+.. ..+...++ ++|+.|||++-| +.+.|+..
T Consensus 304 ~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~ 370 (407)
T PLN02851 304 KKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWD 370 (407)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCC
Confidence 67788899999999999887665666555443 55556654 689999999998 35677753
No 152
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=78.63 E-value=8 Score=34.52 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=49.6
Q ss_pred EeeCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHhcCCCceEEEEEcCCCcccccC
Q 023017 39 EGKANSRMAILNRPSALNALNTNMGAKLN-----------------------KLFKAWENDPNIGFVSMKGSGRAFCAGG 95 (288)
Q Consensus 39 ~~~~~v~~i~ln~p~~~N~l~~~~~~~l~-----------------------~~l~~~~~d~~v~vvvl~g~g~~F~aG~ 95 (288)
-+.|+|.+|- +.-+++.+...++. ++|+.+++||+.+++|+-|+- |.
T Consensus 143 ~~~G~IGiVS-----rSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEi-----GG 212 (293)
T COG0074 143 YKPGNIGIVS-----RSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEI-----GG 212 (293)
T ss_pred ccCCceEEEe-----cCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecC-----CC
Confidence 3467777654 34567777777766 678999999999999999961 11
Q ss_pred ChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
+- .+...+ ++.. ...+||+|+.+-|.+.
T Consensus 213 ~a-----------Ee~AA~-------~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 213 PA-----------EEEAAE-------YIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cH-----------HHHHHH-------HHHH-hccCCCEEEEEeccCC
Confidence 11 122222 3333 2345999999999865
No 153
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=78.10 E-value=7.6 Score=36.41 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHcC----cCcHHHHHHhhc-C-CCCCCC
Q 023017 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCFG----LDTVEEIIDSLD-D-VAPSYA 287 (288)
Q Consensus 228 ~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~~----~~~~e~~~~~le-k-r~p~~~ 287 (288)
+.+...+|.++..+.+.+++.....+.+.+.. ..+...++. +|+.|||++-|- | +.|+..
T Consensus 271 ~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~ 337 (381)
T PLN02988 271 QALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWE 337 (381)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCCCCCCCC
Confidence 67778899999999999887665566555443 556666654 799999999973 3 677764
No 154
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=76.60 E-value=9.5 Score=36.03 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.1
Q ss_pred HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH-HHHHHHHc----CcCcHHHHHHhhc--CCCCCCC
Q 023017 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR-IDIVDKCF----GLDTVEEIIDSLD--DVAPSYA 287 (288)
Q Consensus 228 ~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~-~~~~~~~~----~~~~~e~~~~~le--kr~p~~~ 287 (288)
+.+...+|.++..+.+.+++.....+.+.+.. ..+...++ ++|+.|||++-|- .+.|+..
T Consensus 299 ~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~ 365 (401)
T PLN02157 299 RRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWD 365 (401)
T ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCCCCCCCC
Confidence 57778899999999999887665566555443 56666665 4799999999983 3677764
No 155
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=76.47 E-value=7.5 Score=30.92 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 65 KLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 65 ~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
.+.+.++.+.+||+.++|++.-++- ++ . +.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~-----------------~d---~----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGI-----------------GD---G----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------------------S----H----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCC-----------------CC---H----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 4678888899999999999988630 01 1 2223345555555 99999999874
No 156
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=71.67 E-value=12 Score=34.07 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 66 LNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 66 l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
+.+.|+.+++||+.++|++.+++. |. ......+|.+. ....||+|+.+-|...
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g----G~------------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG----GT------------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC----Cc------------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 457778888888888888888621 11 01122233332 2358999999998864
No 157
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=70.07 E-value=9.5 Score=30.93 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 135 (288)
-.+|++. ..++|..+.+||++++|++-+.+++=+. .+....+...+...-. ...++|+|+
T Consensus 54 Pmid~~~---~~~~l~~~~~Dp~v~vIlvd~~~G~g~~---------------~~~A~~l~~a~~~~~~--~~~~~pvVa 113 (153)
T PF00549_consen 54 PMIDPST---RNEALEIEAADPEVKVILVDIVGGIGSC---------------EDPAAGLIPAIKEAKA--EGRKKPVVA 113 (153)
T ss_dssp TTT-SSH---HHHHHHHHHTSTTESEEEEEEESSSSSH---------------HHHHHHHHHHHSHCTH--TTT-SEEEE
T ss_pred CCcCHHH---HHHHHHHHhcCCCccEEEEEeccccCch---------------HHHHHHHHHHHHhccc--cCCCCcEEE
Confidence 3355444 4777888888999999999986543222 1112222222211111 346899999
Q ss_pred EEcCcccc
Q 023017 136 ILNGVTMG 143 (288)
Q Consensus 136 av~G~a~G 143 (288)
.|.|...-
T Consensus 114 ~v~GT~~d 121 (153)
T PF00549_consen 114 RVCGTNAD 121 (153)
T ss_dssp EEESTTCH
T ss_pred EeeeecCC
Confidence 99987654
No 158
>smart00250 PLEC Plectin repeat.
Probab=67.43 E-value=4.6 Score=24.33 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHcCccce
Q 023017 196 TGAKLNGAEMMACGLATH 213 (288)
Q Consensus 196 ~g~~~~a~eA~~~Glv~~ 213 (288)
+|++++-.||.+.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 159
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=66.51 E-value=12 Score=35.58 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcC
Q 023017 60 TNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139 (288)
Q Consensus 60 ~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 139 (288)
.+...++..+++.++..+++-+|||.=.|+++. ||-.|. -..+.+.++.+|.|||++| |
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e---DL~~Fn-----------------~e~~~rai~~~~~Pvis~i-G 227 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRGGGSLE---DLWSFN-----------------DEKVARAIFLSKIPIISAV-G 227 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH---HhhhcC-----------------cHHHHHHHHcCCCCEEEec-C
Confidence 345778888888888655566666553333221 222221 1257788999999999988 2
Q ss_pred cccccccccc-cccCeEEEeCc
Q 023017 140 VTMGGGAGVS-IPGTFRVACGK 160 (288)
Q Consensus 140 ~a~GgG~~la-l~~D~~ia~~~ 160 (288)
|-.= +.|+ +.+|.|..|+.
T Consensus 228 He~D--~ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 228 HETD--FTISDFVADLRAPTPS 247 (432)
T ss_pred cCCC--ccHHHHhhhccCCCcH
Confidence 2211 2233 66778877773
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=66.48 E-value=24 Score=25.95 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=37.2
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 023017 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88 (288)
Q Consensus 34 ~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g 88 (288)
-.+.++..+++.+|++..+ ++.+....+.+.+..+..++..+.|++--.+
T Consensus 3 ~~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 3 LNIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred eEEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 4678888999999998764 5555577777777766554567888888766
No 161
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.47 E-value=23 Score=35.26 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCceEEEEEcC-CCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 66 LNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 66 l~~~l~~~~~d~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
+.+.|+.+++||+.++|++.++ |.. .-.++.+ ..++.. ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~--------------------~e~~f~e----a~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR--------------------DEYSLVE----ALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch--------------------hHHHHHH----HHHHhc-CCCCEEEEeccCCC
Confidence 5677888888999999998886 311 1112222 222222 68999999999986
No 162
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=62.16 E-value=11 Score=34.70 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHhhcCCHHHHHHHHHHhhccCCCChhhHHHH--HHHHHHHcCcCcHHHHHHhh--cCCCCCC
Q 023017 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR--IDIVDKCFGLDTVEEIIDSL--DDVAPSY 286 (288)
Q Consensus 228 ~~l~~~~~~~~~~~k~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~l--ekr~p~~ 286 (288)
+.|...+|.+++.+.+.+.......+++.+.. .-....+.++|+.||+++-| +.+.|+.
T Consensus 303 k~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW 365 (401)
T KOG1684|consen 303 KTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKW 365 (401)
T ss_pred HHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCC
Confidence 67778899999998888876544444444332 33344566899999999998 5577764
No 163
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=60.60 E-value=3.1 Score=26.14 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=16.6
Q ss_pred hcCCCCCHHHHHHcCcccee
Q 023017 195 LTGAKLNGAEMMACGLATHY 214 (288)
Q Consensus 195 l~g~~~~a~eA~~~Glv~~v 214 (288)
-+|++++-++|.+.||+|.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 47899999999999999753
No 164
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=60.38 E-value=48 Score=24.29 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=36.9
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcc
Q 023017 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91 (288)
Q Consensus 37 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F 91 (288)
.++..+++.++++..+ ++.....++.+.+..+-..+..+.++|.-.+-.|
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 4678899999999776 6667777788887766444457888988776444
No 165
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=58.44 E-value=27 Score=31.57 Aligned_cols=78 Identities=8% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCC---CceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 023017 61 NMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~---~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav 137 (288)
....++.++|+.+...+ .+-+|||.=.||++. ||-.|- -..+.+.+..+|.|||++|
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e---DL~~FN-----------------~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE---DLWAFN-----------------DEEVARAIAASPIPVISAI 114 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChH---HhcccC-----------------hHHHHHHHHhCCCCEEEec
Confidence 45778888888887654 455566543222221 222221 1257788999999999988
Q ss_pred cCcccccccccc-cccCeEEEeCce
Q 023017 138 NGVTMGGGAGVS-IPGTFRVACGKT 161 (288)
Q Consensus 138 ~G~a~GgG~~la-l~~D~~ia~~~a 161 (288)
||-.= ..|+ +.||+|..|+.+
T Consensus 115 -GHe~D--~ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 115 -GHETD--FTIADFVADLRAPTPTA 136 (319)
T ss_pred -CCCCC--chHHHHHHHhhCCCHHH
Confidence 33222 1233 667788777743
No 166
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=57.35 E-value=1.1e+02 Score=27.73 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=71.7
Q ss_pred ccCCCCcEEEEeeCCE---EEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEEcC-CCcccccCCh-hhH--
Q 023017 29 TDDLCNQVLVEGKANS---RMAILNRPSALNALNTNMGAKLNKLF-KAWENDPNIGFVSMKGS-GRAFCAGGDI-VSL-- 100 (288)
Q Consensus 29 ~~~~~~~v~~~~~~~v---~~i~ln~p~~~N~l~~~~~~~l~~~l-~~~~~d~~v~vvvl~g~-g~~F~aG~Dl-~~~-- 100 (288)
....++.+.+-.+|++ -.+..... ..|.++++.+.+-...+ .++...+.-++.||-|. .+.|--+-+. ..+
T Consensus 94 ~~~~FDlvi~p~HD~~~~~~Nvl~t~g-a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~ 172 (311)
T PF06258_consen 94 PPRPFDLVIVPEHDRLPRGPNVLPTLG-APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLD 172 (311)
T ss_pred CccccCEEEECcccCcCCCCceEeccc-CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHH
Confidence 3456777777555554 22222222 36999999888866665 44555666677777664 3555444331 111
Q ss_pred --HHhhccCC--------hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCeEEEeCceEEeccccc
Q 023017 101 --YHFMNQGK--------LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 169 (288)
Q Consensus 101 --~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~ 169 (288)
........ ...-.+.... +...+.. .|-+...+|.--+-=.++...||.+|+|+|+.=.+.|.-
T Consensus 173 ~l~~~~~~~~~~~~vttSRRTp~~~~~~---L~~~~~~--~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~ 246 (311)
T PF06258_consen 173 QLAALAAAYGGSLLVTTSRRTPPEAEAA---LRELLKD--NPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAA 246 (311)
T ss_pred HHHHHHHhCCCeEEEEcCCCCcHHHHHH---HHHhhcC--CCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHH
Confidence 11111110 0001111111 1112222 333333366666666778899999999998876666664
No 167
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=56.23 E-value=35 Score=30.86 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 65 KLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 65 ~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
.+.+.|+.+.+||+.++|++..++ .|.+++ ...+|.+. .. ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~----~G~~~~------------d~~~f~~a-------a~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEI----GGTAEE------------DAAAFIKE-------SG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEecc----CCchHH------------HHHHHHHH-------hc-CCCCEEEEEecCCC
Confidence 345677777778888888888762 122221 11222221 21 28999999998864
No 168
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=55.93 E-value=55 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=41.0
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------ceEEEEEcCC
Q 023017 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--------IGFVSMKGSG 88 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~--------v~vvvl~g~g 88 (288)
+.++..+++.+++++.| ++......+.+.+.+...... ++.|||-..+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45788999999999887 888999999999999887765 7899998776
No 169
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=48.27 E-value=43 Score=31.94 Aligned_cols=77 Identities=9% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
....++.++++.++..+++-++|+-=. |+-++++.. |.+ ..+.+.++.++.|+|++|- |
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRG------GGSiEDLW~------------FNd--E~vaRAi~~s~iPvISAVG-H 234 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARG------GGSIEDLWA------------FND--EIVARAIAASRIPVISAVG-H 234 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecC------cchHHHHhc------------cCh--HHHHHHHHhCCCCeEeecc-c
Confidence 346778888888887777777666432 222333322 111 2577889999999999982 2
Q ss_pred ccccccccc-cccCeEEEeCc
Q 023017 141 TMGGGAGVS-IPGTFRVACGK 160 (288)
Q Consensus 141 a~GgG~~la-l~~D~~ia~~~ 160 (288)
-- -+.|+ +.+|+|-+|+.
T Consensus 235 Et--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 235 ET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred CC--CccHHHhhhhccCCCch
Confidence 11 12233 55677777663
No 170
>PRK06091 membrane protein FdrA; Validated
Probab=47.46 E-value=59 Score=32.05 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCcEEEEEcCcccc
Q 023017 121 SFIYLLGTHLKPHVAILNGVTMG 143 (288)
Q Consensus 121 ~l~~~l~~~~kp~Iaav~G~a~G 143 (288)
+++..++.+.||+|+..-|..--
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~~ 292 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTPA 292 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCch
Confidence 34444445699999999987543
No 171
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=46.73 E-value=36 Score=32.38 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 61 ~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
....++.++|+.++... +-+|||.=.|+++ -||-.|. -..+.+.+..+|.|||++| ||
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii~RGGGS~---eDL~~Fn-----------------~e~v~~ai~~~~~Pvis~I-GH 233 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIVARGGGSL---EDLWAFN-----------------DEAVARAIAASRIPVISAV-GH 233 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEEecCCCCH---HHhhccC-----------------cHHHHHHHHcCCCCEEEec-cC
Confidence 44778888888887643 3344443222221 1332221 1257788999999999988 22
Q ss_pred ccccccccc-cccCeEEEeCc
Q 023017 141 TMGGGAGVS-IPGTFRVACGK 160 (288)
Q Consensus 141 a~GgG~~la-l~~D~~ia~~~ 160 (288)
-.= ..|+ +.+|.|..||.
T Consensus 234 E~D--~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 234 ETD--FTIADFVADLRAPTPT 252 (438)
T ss_pred CCC--ccHHHHhhhccCCChH
Confidence 211 2233 66778877774
No 172
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=44.58 E-value=55 Score=31.32 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCccc
Q 023017 64 AKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (288)
Q Consensus 64 ~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~ 142 (288)
-.+.+.++.+.+||+.++|++..++- .+ ..+|. +..++... .||+|+..-|..-
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~~-----------------~~---~~~f~----~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEGI-----------------KD---GRKFL----KTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecCC-----------------CC---HHHHH----HHHHHHcC-CCCEEEEecCCCh
Confidence 45678888888899999999987640 01 11222 23344444 8999999998864
No 173
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=44.47 E-value=2.2e+02 Score=24.88 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCc
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKP 132 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vv--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 132 (288)
+..+..+.-..|.+++...-.+..-+-+ ++-..|..++-- +| .-....++....+.+...+...-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grr---eE---------llGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRR---EE---------LLGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchH---HH---------HhhHHHHHHHHHHHHHHHHHcCCC
Confidence 6778877777777665544433323333 333333333210 01 112344455556667777888999
Q ss_pred EEEEEcCccccccc-ccccccCeEEEeCceEEecccccccccCCCchHHHHhhcchHHHHHHHhcCCC--CCHHHHHHcC
Q 023017 133 HVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK--LNGAEMMACG 209 (288)
Q Consensus 133 ~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~a~~l~l~g~~--~~a~eA~~~G 209 (288)
+|+.|-|++++||| .-.+.+|-.||-+ ++.+-..+.. +..+..++.=..-.++.-+--+ ++.+--.++|
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~-------ga~i~vM~~~-s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALP-------GAMIHVMGKP-SAARVTKRPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCC-------CCeeecCChH-HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 99999999999988 4667788887755 3333332222 2223332221113444433333 4456677899
Q ss_pred ccceecCCCC
Q 023017 210 LATHYSVSEK 219 (288)
Q Consensus 210 lv~~vv~~~~ 219 (288)
.|+++.+.+.
T Consensus 180 ~l~~l~~~~~ 189 (234)
T PF06833_consen 180 ALDELWDGDL 189 (234)
T ss_pred cHHHHhcccc
Confidence 9999988443
No 174
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=43.22 E-value=52 Score=32.37 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=34.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccc
Q 023017 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~ 151 (288)
..+.+....-+.++.+.+..+.++..|+|.+||-+..---.++...
T Consensus 348 ~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I 393 (557)
T PRK13505 348 EENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAAL 393 (557)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 3455666667778888889999999999999997766555444443
No 175
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=40.22 E-value=1e+02 Score=26.82 Aligned_cols=54 Identities=7% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcc
Q 023017 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91 (288)
Q Consensus 32 ~~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F 91 (288)
++..|.+...|.++ .++..+.+|++.+..+.+.+.++.+. .+++-|+.|.|..|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 34556666666654 23334779999999999999999865 57898888887555
No 176
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=38.97 E-value=84 Score=27.60 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcc
Q 023017 66 LNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 66 l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 141 (288)
+.++|+.+-.|++.+.+|+-|+= .| ...++..+|++.. .=..-+||||+.+.|..
T Consensus 219 FID~L~vFl~D~~t~GIiliGEI----GG------------~AEe~AA~flk~~-----nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEI----GG------------SAEEEAAEFLKEY-----NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred HHHHHHHHhcCcccceEEEEecc----CC------------hhhHHHHHHHHHh-----ccCCCCCceeEEeeccc
Confidence 56778888889999999999861 11 1122333333321 12346899999998764
No 177
>PRK14556 pyrH uridylate kinase; Provisional
Probab=38.94 E-value=1e+02 Score=27.12 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccc
Q 023017 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93 (288)
Q Consensus 33 ~~~v~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~a 93 (288)
+..|.+...|.++ . +++.+.+|.+.+.++.+.+..+.+. .+++.|+.|.|..|..
T Consensus 15 ~~rvllKlsGe~l----~-~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 15 LKRILLKLSGESL----S-ADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILRG 69 (249)
T ss_pred hCEEEEEEehhhC----c-CCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHhC
Confidence 4456665555543 2 2345789999999999999998754 5799999998877753
No 178
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=37.83 E-value=57 Score=25.43 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEEcCC
Q 023017 45 RMAILNRPSALNAL--N----------TNMGAKLNKLFKAW--ENDPNIGFVSMKGSG 88 (288)
Q Consensus 45 ~~i~ln~p~~~N~l--~----------~~~~~~l~~~l~~~--~~d~~v~vvvl~g~g 88 (288)
..|+.+-|.|+..= + ..++.++.+.+.+. ...+.++.|||.|.|
T Consensus 26 ~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 26 QRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 44666778776542 2 35667777777776 556789999999975
No 179
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=36.27 E-value=1.2e+02 Score=27.36 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcC
Q 023017 65 KLNKLFKAWENDPNIGFVSMKGS 87 (288)
Q Consensus 65 ~l~~~l~~~~~d~~v~vvvl~g~ 87 (288)
.+.+.|+.+.+||+.++|++..+
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 45677777778888888888775
No 180
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=33.99 E-value=1.6e+02 Score=21.32 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=35.5
Q ss_pred EEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcc
Q 023017 38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91 (288)
Q Consensus 38 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F 91 (288)
.+..+++..++++.+ ++......+.+.+.....++..+.+||.-++=.|
T Consensus 3 ~~~~~~v~ii~~~G~-----l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (100)
T cd06844 3 LEKVDDYWVVRLEGE-----LDHHSVEQFKEELLHNITNVAGKTIVIDISALEF 51 (100)
T ss_pred eEEECCEEEEEEEEE-----ecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 456778999998865 7777788888877654444567889988776433
No 181
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=31.80 E-value=1.3e+02 Score=21.15 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=30.9
Q ss_pred EEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-Ccc
Q 023017 38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAF 91 (288)
Q Consensus 38 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F 91 (288)
....+++.++.+..+ ++..-..++.+.+.....++ .+.++|...+ ..+
T Consensus 3 ~~~~~~~~ii~l~G~-----l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~i 51 (99)
T cd07043 3 VEERGGVLVVRLSGE-----LDAATAPELREALEELLAEG-PRRLVLDLSGVTFI 51 (99)
T ss_pred eEEECCEEEEEEece-----ecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEE
Confidence 445678888888664 44444566677666655443 6778888776 444
No 182
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=30.83 E-value=1.5e+02 Score=26.63 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEcC
Q 023017 65 KLNKLFKAWENDPNIGFVSMKGS 87 (288)
Q Consensus 65 ~l~~~l~~~~~d~~v~vvvl~g~ 87 (288)
.+.+.|+.+.+||+.++|++..+
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 45677778888888888888876
No 183
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=30.65 E-value=1.9e+02 Score=27.35 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g 88 (288)
--++++.+.+|.+.+.+.-++..-.+||.+|+.
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTD 150 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGTD 150 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCCh
Confidence 447888899999998876655344667777764
No 184
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=27.95 E-value=1.1e+02 Score=26.48 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 023017 51 RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR 89 (288)
Q Consensus 51 ~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~ 89 (288)
.++....++.+.+.++.+.+.++. ..++|+++|.|.
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~ 48 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGS 48 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCc
Confidence 333456799999999999998875 468899998654
No 185
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=27.94 E-value=2.4e+02 Score=20.53 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=33.3
Q ss_pred EEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEEcCCCcc
Q 023017 38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLF-KAWENDPNIGFVSMKGSGRAF 91 (288)
Q Consensus 38 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l-~~~~~d~~v~vvvl~g~g~~F 91 (288)
++..+++..+.++.+ ++.....++.+.+ +.+.+ ...+.||+.-.+=.|
T Consensus 5 i~~~~~~~v~~l~G~-----L~~~~a~~~~~~l~~~~~~-~~~~~vvlDls~v~~ 53 (109)
T cd07041 5 IPVWDGVLVLPLIGD-----LDDERAEQLQERLLEAISR-RRARGVIIDLTGVPV 53 (109)
T ss_pred EEEeCCEEEEeeeee-----ECHHHHHHHHHHHHHHHHH-cCCCEEEEECCCCch
Confidence 345678888998865 8888888888866 44432 356788887765333
No 186
>smart00463 SMR Small MutS-related domain.
Probab=27.30 E-value=1.4e+02 Score=20.74 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCC-ceEEEEEcCCCc
Q 023017 60 TNMGAKLNKLFKAWENDPN-IGFVSMKGSGRA 90 (288)
Q Consensus 60 ~~~~~~l~~~l~~~~~d~~-v~vvvl~g~g~~ 90 (288)
.+.+..|.+.++.+..... -.+.||+|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 4677888888998887765 579999999844
No 187
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.78 E-value=2.9e+02 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCc-eEEEEEcC
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNI-GFVSMKGS 87 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v-~vvvl~g~ 87 (288)
--++++.+.+|.+.+++.-+++++ .+||++|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 448999999999999876454555 45555564
No 188
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.39 E-value=2.5e+02 Score=22.76 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCC--CcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 023017 65 KLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN 138 (288)
Q Consensus 65 ~l~~~l~~~~~d~~v~vvvl~g~g--~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 138 (288)
.|...+++--.+...++++|.|.. ..+|.+..++ .+...+..+++..+...+......+|++.-
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs----------~~dR~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGFS----------KEDREENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SS----------HHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCC----------HHHHHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 344444444445568999999975 4566654332 233445566777788888888877777654
No 189
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.74 E-value=5.2e+02 Score=23.29 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=73.0
Q ss_pred CCCcEEEEeeCCE--------EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhH-H
Q 023017 32 LCNQVLVEGKANS--------RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSL-Y 101 (288)
Q Consensus 32 ~~~~v~~~~~~~v--------~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~-~ 101 (288)
+++-|.+.++|.+ =++.||.. .|-++...+....+++...-..+.-+|-||-|.. +.|.---|-... .
T Consensus 109 ~fDlvivp~HD~~~~~s~~~~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~ 186 (329)
T COG3660 109 HFDLVIVPYHDWREELSDQGPNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFA 186 (329)
T ss_pred cceEEeccchhhhhhhhccCCceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHH
Confidence 4556666665544 24566654 4778889999999999888766767777777754 667654444321 1
Q ss_pred H----hhccCChHHHHHHHHHHHHHHHH-Hh-cCCCcEEEEEcCc--ccccccccccccCeEEEeCceEEecccc
Q 023017 102 H----FMNQGKLEECKDFFRTLYSFIYL-LG-THLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPET 168 (288)
Q Consensus 102 ~----~~~~~~~~~~~~~~~~~~~l~~~-l~-~~~kp~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~ 168 (288)
+ ...+........+.++--+..+. +. +.+--.+..-++. ...--..+..++|+.|++.++.=...|.
T Consensus 187 ~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEA 261 (329)
T COG3660 187 SLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEA 261 (329)
T ss_pred HHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHH
Confidence 1 00100000000011111111111 11 2344445555665 3344566788899999998775544554
No 190
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=23.19 E-value=73 Score=30.17 Aligned_cols=95 Identities=7% Similarity=-0.004 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCC-CcccccCChhhHHH----hhc--cCChHHHHH
Q 023017 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK--GSG-RAFCAGGDIVSLYH----FMN--QGKLEECKD 114 (288)
Q Consensus 44 v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~--g~g-~~F~aG~Dl~~~~~----~~~--~~~~~~~~~ 114 (288)
|+.|+| +.|+.....+|..+++.++++. ++.+||- +.+ +..+...++..+.- ... ..+......
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 777665 4577778888999999999876 8888875 544 66666666654221 000 001100000
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccc
Q 023017 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151 (288)
Q Consensus 115 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~ 151 (288)
+.... -...++|+|..||+....++=-++.+
T Consensus 278 ~~~~~------~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 278 FSASG------EALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred ccccc------ccCCCCCEEEEECCCCccHHHHHHHH
Confidence 00000 00457999999998876665544433
No 191
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=22.96 E-value=3e+02 Score=19.86 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHH-HHHhcCCCcEEEEEcCcc
Q 023017 63 GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI-YLLGTHLKPHVAILNGVT 141 (288)
Q Consensus 63 ~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~kp~Iaav~G~a 141 (288)
-+++.+++.++-+++++.+++++-. + .+.+.+.+ ........|+|..+-+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~------------~---------------~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITED------------L---------------AEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHH------------H---------------HTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHH------------H---------------HHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 4677888888888889999998863 0 11111222 223567899999997664
Q ss_pred c
Q 023017 142 M 142 (288)
Q Consensus 142 ~ 142 (288)
-
T Consensus 80 ~ 80 (95)
T PF01990_consen 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 192
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=22.68 E-value=2.8e+02 Score=25.72 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cC
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMK-GS 87 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~-g~ 87 (288)
.-|+++.+.+|.+.+.+.-+++++-.|||| |.
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGT 110 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITHGT 110 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCC
Confidence 569999999999999998877765555554 53
No 193
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=22.43 E-value=2.8e+02 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 023017 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88 (288)
Q Consensus 56 N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g 88 (288)
--++++.+.+|.+.+++.-++..-.+||.+|+.
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~~~dGvVVtHGTD 163 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTD 163 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhccCCeEEEecCCc
Confidence 448888999999999886655444566666764
No 194
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=22.30 E-value=1.4e+02 Score=29.53 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred cCCCceEEEEEcCCCcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCcccccccccccccCe
Q 023017 75 NDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154 (288)
Q Consensus 75 ~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lal~~D~ 154 (288)
-.|++-|+|-|-..=-+-.|.+...+ ...+.+.+.+-+.++.+=+..+..+..|+|.++|=..-=---++.+.+++
T Consensus 320 l~P~~~VlVaTvRALK~HGG~~~~~l----~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~ 395 (557)
T PF01268_consen 320 LKPDAVVLVATVRALKMHGGVAKDDL----NEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIREL 395 (557)
T ss_dssp ---SEEEEEEEHHHHHHHTT--GGGT----TS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHH
T ss_pred cCcceEEEeeechHHHhhcCCCcccc----CccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 34555555554432222333333332 23455666666777777788899999999999997666566666666555
Q ss_pred E
Q 023017 155 R 155 (288)
Q Consensus 155 ~ 155 (288)
.
T Consensus 396 ~ 396 (557)
T PF01268_consen 396 C 396 (557)
T ss_dssp C
T ss_pred H
Confidence 4
No 195
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.88 E-value=2.9e+02 Score=25.61 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcC
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGS 87 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl-~g~ 87 (288)
..-++++.+..|.+.++..-+++++..+|+ +|+
T Consensus 82 S~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGT 115 (349)
T TIGR00520 82 SQDMNEEVLLKLAKGINELLASDDYDGIVITHGT 115 (349)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 355888999999999988766555555554 454
No 196
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=21.14 E-value=3.9e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC
Q 023017 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88 (288)
Q Consensus 55 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g 88 (288)
..-++++.+.+|.+.+++.. ++--.+||.+|+.
T Consensus 60 Ss~mt~~~w~~la~~I~~~~-~~~dG~VVtHGTD 92 (335)
T PRK09461 60 SSDMTPEDWQHIADDIKANY-DDYDGFVILHGTD 92 (335)
T ss_pred cccCCHHHHHHHHHHHHHHh-ccCCeEEEeeccc
Confidence 35689999999999998765 3334566666754
No 197
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=20.94 E-value=2e+02 Score=24.65 Aligned_cols=43 Identities=28% Similarity=0.258 Sum_probs=29.7
Q ss_pred ceEEEEEcCC-CcccccCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCc
Q 023017 79 IGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (288)
Q Consensus 79 v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~ 140 (288)
+.++||||+. ++|+ |..++ ..+..+...+....|+++..+-||
T Consensus 60 y~gfvIsGS~~dAf~---d~dWI----------------~KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 60 YDGFVISGSKHDAFS---DADWI----------------KKLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred hceEEEeCCcccccc---cchHH----------------HHHHHHHHHHHhhccceEEEeccH
Confidence 5678888876 6665 44333 344556667777889999888887
No 198
>PRK14053 methyltransferase; Provisional
Probab=20.41 E-value=1.6e+02 Score=24.70 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=41.6
Q ss_pred EEEEeeCCEEEEEEcCCC---CCCCCCHHHHH---HHHHHHHHHhcCCCceEEEEEcCC-CcccccCChhhHH
Q 023017 36 VLVEGKANSRMAILNRPS---ALNALNTNMGA---KLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLY 101 (288)
Q Consensus 36 v~~~~~~~v~~i~ln~p~---~~N~l~~~~~~---~l~~~l~~~~~d~~v~vvvl~g~g-~~F~aG~Dl~~~~ 101 (288)
..-..+..|+++||...- ..-++.-.+.. .+...+..+-.||++|.+||.|.. +..-+|--|..+.
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~ 88 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIH 88 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 334445678888887532 11222222222 367788888899999999999976 5566665555443
Done!