BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023018
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V+ VA SP D +A+ D W N G + GH SV +AFS
Sbjct: 51 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 108
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 168 RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVN 264
G + S D S S D +V + N
Sbjct: 226 G---VAFSPDGQTIASASDDKTVKLWN 249
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V VA SP D +A+ D W N G + GH SV+ +AF
Sbjct: 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP 272
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ +L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 332 RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 389
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVN 264
G + S D S S D +V + N
Sbjct: 390 G---VAFSPDGQTIASASDDKTVKLWN 413
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 8/207 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V+ VA SP D +A+ D W N G + GH SV +AFS
Sbjct: 338 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 395
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P + + S+D TV +WN
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 455 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVN 264
G + S D S S D +V + N
Sbjct: 513 G---VAFSPDGQTIASASDDKTVKLWN 536
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 12/202 (5%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V VA SP D +A+ D W N G + GH SV +AFS
Sbjct: 92 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 149
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 150 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----- 232
+ L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 209 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVN 266
Query: 233 --PYHTEGLTCLTISADSTLAL 252
+ +G T + S D T+ L
Sbjct: 267 GVAFRPDGQTIASASDDKTVKL 288
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 12/200 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
HS V VA SP D +A+ D W N G + GH SV +AFS DG
Sbjct: 12 LEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG 69
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
Q +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH------- 232
L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 129 -GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 233 PYHTEGLTCLTISADSTLAL 252
+ +G T + S D T+ L
Sbjct: 187 AFSPDGQTIASASDDKTVKL 206
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEIQGHKDSVSSLAFS 116
+GHS V+ VA SP D T+ + DDK W N G + GH SV +AFS
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIAS--ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS 476
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +W
Sbjct: 477 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
N + L +GH SSV F+PDG+TI + S D T+++WN
Sbjct: 536 NRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161
++ H SV +AFS DGQ +AS D V++W+ +G L TL G V V++ P G
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
+ + S+D TV +WN + L +GH SSV F+PDG+TI + SDD T+++WN +
Sbjct: 70 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 222 SGENIHVIRGH-------PYHTEGLTCLTISADSTLAL 252
+G+ + + GH + +G T + S D T+ L
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 125 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 161 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 207
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 41 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 217
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 250
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 153
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 154 RIWDVKTGK--CLK 165
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 312 TENIIASAALENDKTIKLW 330
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 220 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 185
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 228
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 132 RIWDVKTGK--CLK 143
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 290 TENIIASAALENDKTIKLW 308
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 198 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 120 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 156 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 202
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 36 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 212
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 245
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 148
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 149 RIWDVKTGK--CLK 160
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 306
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 307 TENIIASAALENDKTIKLW 325
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 215 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 99 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 157
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 135 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 181
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 15 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 191
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 224
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 127
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 128 RIWDVKTGK--CLK 139
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 285
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 286 TENIIASAALENDKTIKLW 304
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 194 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 185
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 228
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 132 RIWDVKTGK--CLK 143
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 290 TENIIASAALENDKTIKLW 308
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 198 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 127 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 163 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 209
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 43 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 219
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 252
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 155
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 156 RIWDVKTGK--CLK 167
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 313
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 314 TENIIASAALENDKTIKLW 332
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 222 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 104 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 162
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 140 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 186
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 20 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 196
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 229
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 132
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 133 RIWDVKTGK--CLK 144
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 290
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 291 TENIIASAALENDKTIKLW 309
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 199 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 231
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 135 RIWDVKTGK--CLK 146
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGLD 128
++AS L+
Sbjct: 293 TENIIASAALE 303
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 201 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ ++ +D
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 231
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 135 RIWDVKTGK--CLK 146
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGLD 128
++AS L+
Sbjct: 293 TENIIASAALE 303
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 201 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ ++ +D
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKSD 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 108 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 166
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 144 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 190
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 24 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 200
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 233
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 136
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 137 RIWDVKTGK--CLK 148
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 295 TENIIASAALENDKTIKLW 313
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 203 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 234
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 138 RIWDVKTGK--CLK 149
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 204 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 234
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 138 RIWDVKTGK--CLK 149
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 204 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 234
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 138 RIWDVKTGK--CLK 149
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 204 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 102 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 160
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 138 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 184
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 18 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 194
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 227
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 130
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 131 RIWDVKTGK--CLK 142
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 288
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 289 TENIIASAALENDKTIKLW 307
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 197 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LA+ D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G+ + + P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP L A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 231
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + A S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVCCLN 274
+ ++ TGK CL
Sbjct: 135 RIWDVKTGK--CLK 146
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 293 TENIIASAALENDKTIKLW 311
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 201 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D LV IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+T+ +W+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G ++ P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
+ + S + L+ + D ++ + + + GK CL
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK 231
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
L TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTG 268
+ ++ TG
Sbjct: 135 RIWDVKTG 142
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ Y MF+ GH +V+ F+P+G+ + + S D +++W G+ I GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL-------NFQYTC 279
G++ + S+DS L +S S D ++ + ++++GK CL N+ + C
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCC 116
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 293 TENIIASAALENDKTIKLW 311
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGG 126
V SP ++A D+ W ++G GHK+ + FS+ G + + SG
Sbjct: 201 VKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
D +V IW+ + + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
G ++ P H++ ++ + + D +L +S S DG + + +G+ CL
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS+ V+ +P + L+ +G D+ W + G + H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
L+ S DGL +IWD +SG LK ++ V +V + P G +LA + D+ + +W+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+ L ++GH + C +F+ GK I +GS+D + +WN ++ E + ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
L H V+ F DG I + S D R+W+ SG+ + +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
L TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTG 268
+ ++ TG
Sbjct: 135 RIWDVKTG 142
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ Y MF+ GH +V+ F+P+G+ + + S D +++W G+ I GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL-------NFQYTC 279
G++ + S+DS L +S S D ++ + ++++GK CL N+ + C
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCC 116
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGL--DGLVQIW 134
++AS L D +++W
Sbjct: 293 TENIIASAALENDKTIKLW 311
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDG-QLLASGGLDGLVQIWD 135
L AT D K W ++G GHK+ + FS+ G + + SG D +V IW+
Sbjct: 211 LAATLDNDLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNAD 179
+ + L+G V + HP +I+ + + D T+ +W +D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 19/235 (8%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+ SGH V V P + +V+ D W GD+ ++GH DSV ++F
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
G+LLAS D +++WD T+ G V VS P G +++ S D T+ MW
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ F+GH V DG I + S+D T+RVW + E +R H + E
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 238 GLTCLTISADSTLA-----------------LSGSKDGSVHMVNITTGKVCCLNF 275
++ S+ S+++ LSGS+D ++ M +++TG +C +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTL 334
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 24/221 (10%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
GH V SV+ P +V+ D W + G GH++ V + + DG L
Sbjct: 190 GHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--------------------G 161
+AS D V++W ++ K L VE +SW P G
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
+L+GS D T+ MW+ L GH + V F GK I + +DD TLRVW+ K
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
+ + + H + +T L + ++GS D +V +
Sbjct: 369 NKRCMKTLNAHEHF---VTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD- 118
F+GH + V V + D TL+A+ D W + + +E++ H+ V ++++ +
Sbjct: 230 FTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 119 -------------------GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
G L SG D +++WD S+G TL G V V +H
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
G +L+ ++D T+ +W+ + + H VT DF + TGS D T++VW
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193
W P K L G V V +HP ++++ SED+T+ +W+ + + GH S
Sbjct: 94 WIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
V F GK + + S D T+++W+ + E I + GH ++ ++ ++I + +S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVS 209
Query: 254 GSKDGSVHMVNITTGKVCCLNF 275
S+D ++ M + TG C F
Sbjct: 210 ASRDKTIKMWEVQTG-YCVKTF 230
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
+ H GH+ +V C V +G D W I G + GH +V +
Sbjct: 190 ECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG+ + SG D +V++WDP + TL+G V S G V++GS D+++
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIR 302
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
+W+ + ++ +GH S+T G D + +G+ D+T+++W+ K+G+ + ++G
Sbjct: 303 VWDVETGNCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
H +TCL + + ++ S DG+V + ++ TG+
Sbjct: 361 HQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGE 393
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 92 WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
WR + ++GH D V + G + SG D +++W +G TL G GG
Sbjct: 103 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
V W S R +I+++GS D T+ +WNA+ ++ GH S+V C K + +GS
Sbjct: 162 V-WSS-QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 217
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271
DATLRVW+ ++G+ +HV+ G H + C + D +SG+ D V + + T + C
Sbjct: 218 DATLRVWDIETGQCLHVLMG---HVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET-ETC 271
Query: 272 CLNFQ-YTCVAYDLDF 286
Q +T Y L F
Sbjct: 272 LHTLQGHTNRVYSLQF 287
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GH+ V+S S ++ +G D W G+ + GH +V + +
Sbjct: 155 LVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM--HLHE 209
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+ + SG D +++WD +G L G V V + G V++G+ D V +W+ +
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE 267
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L+ GH + V F DG + +GS D ++RVW+ ++G IH + GH T G+
Sbjct: 268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ--------YTCVAYDLDFVL 288
+ +SG+ D +V + +I TG+ C Q TC+ ++ +FV+
Sbjct: 326 -----ELKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKNFVI 376
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
H+ GH V +V C D V +G D W +QGH + V SL F
Sbjct: 233 HVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 287
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSEDSTVW 174
DG + SG LD +++WD +GN TL G G+E + +I+++G+ DSTV
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-----LKDNILVSGNADSTVK 342
Query: 175 MWNADRAAYLNMFSG---HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+W+ L G H S+VTC F + + T SDD T+++W+ K+GE I
Sbjct: 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ EI+ H+D V AF
Sbjct: 613 SRLVVRPHTDAVYH-ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF 671
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D + +A+ +D V+IW+ +G L T + V + + H++LA GS D +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
+W+ ++ N GH +SV F+PD K + + S D TL++W+ S
Sbjct: 732 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+++ L+ATG D W +NQ + + + GH +SV+
Sbjct: 698 VHTYDEHSEQVN--CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLK---------CTLEGPGGGVEWV----SWHPR 160
FS D +LLAS DG +++WD +S N + LE P +E + SW
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSAD 815
Query: 161 GHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
G ++ +++ +++++ + L + +GH S++ DF+P + +WN
Sbjct: 816 GARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271
S + RGH G + S D + L+ S D ++ + T KVC
Sbjct: 875 TDSRSKVADCRGHLSWVHG---VMFSPDGSSFLTSSDDQTIRLWE--TKKVC 921
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 12/213 (5%)
Query: 63 HSDEVYSVACSPTDATLVATGG-GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
H V+ + + + TL+++ + + + W++++ + ++GH+++V + +L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF---LRGHQETVKDFRLLKNSRL 1064
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181
L S DG V++W+ +GN + G V + S D T +W+ D
Sbjct: 1065 L-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-----RGHPYHT 236
L+ GH V C F+ D + TG D+ +R+WN +GE +H+ G H
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
+T L S D + +S G + N+ TG+
Sbjct: 1184 GWVTDLCFSPDGKMLISAG--GYIKWWNVVTGE 1214
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++ H D+V FS DGQ +AS G D +Q++ +G ++ V ++
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220
+ S D V +WN+ ++ + H V C FT + TGS D L++W+
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
E + + G HT + S D L S S DG++ + + T+
Sbjct: 737 NQKECRNTMFG---HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
GH+ V +A +P ++ + D W++ N G ++GH VS +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++GS D T+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
+WN Y H V+C F+P+ I + D ++VWN N +
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 187
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
H HT L +T+S D +L SG KDG + ++ GK
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 12/222 (5%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR-INQGDWASEIQGHKDSVSSLA 114
+T F GH+ +V SVA S +D + +G D W + + + + H + VS +
Sbjct: 97 TTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 115 FSMDGQ--LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
FS + ++ S G D LV++W+ ++ LK G G + V+ P G + +G +D
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+W+ + +L G G + F+P+ +C + ++++W+ + + ++
Sbjct: 216 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQE 273
Query: 233 PYHTEG------LTCLTISADSTLALSGSKDGSVHMVNITTG 268
T T L SAD +G D V + +T G
Sbjct: 274 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS V V S +D +G D W + G GH V S+AFS D
Sbjct: 59 LRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS---WHPRGH--IVLAGSEDSTVW 174
+ + SG D +++W+ + G K T++ EWVS + P I+++ D V
Sbjct: 118 RQIVSGSRDKTIKLWN-TLGVCKYTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
+WN GH + +PDG +G D +W+ G++++ + G
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
GH+ V +A +P ++ + D W++ N G ++GH VS +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++GS D T+
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
+WN Y H V+C F+P+ I + D ++VWN N +
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 210
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
H HT L +T+S D +L SG KDG + ++ GK
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 12/222 (5%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR-INQGDWASEIQGHKDSVSSLA 114
+T F GH+ +V SVA S +D + +G D W + + + + H + VS +
Sbjct: 120 TTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 115 FSMDGQ--LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
FS + ++ S G D LV++W+ ++ LK G G + V+ P G + +G +D
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+W+ + +L G G + F+P+ +C + ++++W+ + + ++
Sbjct: 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQE 296
Query: 233 PYHTEG------LTCLTISADSTLALSGSKDGSVHMVNITTG 268
T T L SAD +G D V + +T G
Sbjct: 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS V V S +D +G D W + G GH V S+AFS D
Sbjct: 82 LRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS---WHPRGH--IVLAGSEDSTVW 174
+ + SG D +++W+ + G K T++ EWVS + P I+++ D V
Sbjct: 141 RQIVSGSRDKTIKLWN-TLGVCKYTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
+WN GH + +PDG +G D +W+ G++++ + G
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ +I+ H+D V AF
Sbjct: 614 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D +A+ D V+IWD ++G L T + V + + H++LA GS D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
+W+ ++ N GH +SV F+PD + + + S D TLR+W+ +S ++I+V R
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 107/289 (37%), Gaps = 65/289 (22%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+ + L+ATG D W +NQ + + + GH +SV+
Sbjct: 699 VHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------EGPGGGVEWV----SW--- 157
FS D +LLAS DG +++WD S N + ++ E P VE + SW
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 816
Query: 158 ---------------------------------------HPRGHIVLAGSEDSTVWMWNA 178
P H+ + V +WN
Sbjct: 817 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHP---- 233
D + GH S V F+PDG + T SDD T+RVW K +N ++
Sbjct: 877 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282
+ L + L L K G + + CCL+ VA+
Sbjct: 937 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 51 EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
E P++ +FS GH V + + TL+++ D W GD+ +Q H+
Sbjct: 996 ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1051
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
++V D +LL S DG V++W+ +G ++ G V + +
Sbjct: 1052 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
S D T +W+ D + L+ GH V C F+ DG + TG D+ +R+WN G+ +H
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Query: 228 ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
V G H +T + S DS +S G + N+ TG
Sbjct: 1171 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++ H D+V FS DGQ +AS G D +Q++ +G ++ V ++
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220
+ S D V +W++ ++ + H V C FT + TGS+D L++W+
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
E + + G HT + S D L S S DG++ + ++ +
Sbjct: 738 NQKECRNTMFG---HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
GH V+ V SP D + T D W + S I K + + + +
Sbjct: 887 GHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVL-KQEIDVVFQENETMV 944
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181
LA + GL Q+ +G + P V P V G ED + +
Sbjct: 945 LAVDNIRGL-QLIAGKTGQIDYL---PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
+ GH +V FT DGKT+ + S+D+ ++VWN ++G+ + + H E +
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL----QAHQETVKD 1056
Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKV 270
+ DS L LS S DG+V + N+ TG++
Sbjct: 1057 FRLLQDSRL-LSWSFDGTVKVWNVITGRI 1084
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 93 RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152
+ Q D+ E Q VS S + +A G DG ++I + + + + G V
Sbjct: 959 KTGQIDYLPEAQ-----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
+ + G +++ SEDS + +WN Y+ H +V D + + + S D
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFD 1071
Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
T++VWN +G + R H + IS+D+T S S D + +
Sbjct: 1072 GTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
H +V F+ DG+ I + D TL+V+ ++GE + I+ H + + C S+D +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDS 677
Query: 250 LALSGSKDGSVHMVNITTGKV 270
+ S D V + + TGK+
Sbjct: 678 YIATCSADKKVKIWDSATGKL 698
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ +I+ H+D V AF
Sbjct: 607 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D +A+ D V+IWD ++G L T + V + + H++LA GS D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
+W+ ++ N GH +SV F+PD + + + S D TLR+W+ +S ++I+V R
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 107/289 (37%), Gaps = 65/289 (22%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+ + L+ATG D W +NQ + + + GH +SV+
Sbjct: 692 VHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------EGPGGGVEWV----SW--- 157
FS D +LLAS DG +++WD S N + ++ E P VE + SW
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 158 ---------------------------------------HPRGHIVLAGSEDSTVWMWNA 178
P H+ + V +WN
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHP---- 233
D + GH S V F+PDG + T SDD T+RVW K +N ++
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282
+ L + L L K G + + CCL+ VA+
Sbjct: 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 51 EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
E P++ +FS GH V + + TL+++ D W GD+ +Q H+
Sbjct: 989 ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1044
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
++V D +LL S DG V++W+ +G ++ G V + +
Sbjct: 1045 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
S D T +W+ D + L+ GH V C F+ DG + TG D+ +R+WN G+ +H
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Query: 228 ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
V G H +T + S DS +S G + N+ TG
Sbjct: 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++ H D+V FS DGQ +AS G D +Q++ +G ++ V ++
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220
+ S D V +W++ ++ + H V C FT + TGS+D L++W+
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
E + + G HT + S D L S S DG++ + ++ +
Sbjct: 731 NQKECRNTMFG---HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
GH V+ V SP D + T D W + S I K + + + +
Sbjct: 880 GHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVL-KQEIDVVFQENETMV 937
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181
LA + GL Q+ +G + P V P V G ED + +
Sbjct: 938 LAVDNIRGL-QLIAGKTGQIDYL---PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
+ GH +V FT DGKT+ + S+D+ ++VWN ++G+ + + H E +
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL----QAHQETVKD 1049
Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKV 270
+ DS L LS S DG+V + N+ TG++
Sbjct: 1050 FRLLQDSRL-LSWSFDGTVKVWNVITGRI 1077
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 93 RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152
+ Q D+ E Q VS S + +A G DG ++I + + + + G V
Sbjct: 952 KTGQIDYLPEAQ-----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
+ + G +++ SEDS + +WN Y+ H +V D + + + S D
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFD 1064
Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
T++VWN +G + R H + IS+D+T S S D + +
Sbjct: 1065 GTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
H +V F+ DG+ I + D TL+V+ ++GE + I+ H + + C S+D +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDS 670
Query: 250 LALSGSKDGSVHMVNITTGKV 270
+ S D V + + TGK+
Sbjct: 671 YIATCSADKKVKIWDSATGKL 691
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 13/220 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLA 114
H+D V ++A +A ++ + D W++ + D A + GH V +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++ S D T+
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 175 MWNADRAAYLNMFSG---HGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVI 229
+WN + G H V+C F+P+ TI + S D T++VWN + + +
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
GH T ++ + +S D +L SG KDG V + ++ GK
Sbjct: 558 AGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 8/179 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GHS V V S +D +G D + W + G GH V S+AFS+D
Sbjct: 426 LTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVS---WHPR--GHIVLAGSEDSTV 173
+ + S D +++W+ + G K T+ EG G +WVS + P +++ S D TV
Sbjct: 485 RQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+WN + +GH V+ +PDG +G D + +W+ G+ ++ + +
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 40/239 (16%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR--------INQGDWASEIQGHK 107
ST F GH+ +V SVA S D + + D W I++G +GH+
Sbjct: 464 STRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGG-----EGHR 517
Query: 108 DSVSSLAFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
D VS + FS + + S D V++W+ S+ L+ TL G G V V+ P G +
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVT---CGDFTPDGKTICTGSDDATLRVWNPKS 222
+G +D V +W D A ++S +SV C F+P+ +C ++ +++W+ +S
Sbjct: 578 SGGKDGVVLLW--DLAEGKKLYSLEANSVIHALC--FSPNRYWLCAATEHG-IKIWDLES 632
Query: 223 GENIHVIR------------GHPYHTEG----LTCLTISADSTLALSGSKDGSVHMVNI 265
+ ++ P T+ T L SAD + SG DG + + I
Sbjct: 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIW-----DPSSGNLKCTLEGPGGGVEWVS 156
++ H D V+++A +D ++ S D + +W D + G + L G VE V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
G L+GS D + +W+ F GH V F+ D + I + S D T++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADS--TLALSGSKDGSVHMVNITTGKV 270
+WN + G H + ++C+ S ++ +S S D +V + N++ K+
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 17/224 (7%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASE---------IQGHKD 108
+GH V S+AC +P AT V + D W N +SE ++GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
VS +A S +G S D +++W+ +G + G V V++ P +++G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 169 EDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN 225
D+ + +WN + G H V+C F+P D I +G D ++VW+ +G
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
+ ++GH T +T +T+S D +L S KDG + ++T G+
Sbjct: 189 VTDLKGH---TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 12/213 (5%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAF 115
+ F GH+ +V SVA SP + +V +GG D+ W + +G+ + H D VS + F
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRF 160
Query: 116 --SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
S+D ++ SGG D LV++WD ++G L L+G V V+ P G + + +D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
+W+ + L+ + G+ + F+P+ +C ++ +R+++ ++ + I +
Sbjct: 221 RLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEH 278
Query: 234 YHTEGLT--CLTI--SADSTLALSGSKDGSVHM 262
++ + C++I SAD + SG D + +
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 102 EIQGHKDSVSSLAFSMDGQL---LASGGLDGLVQIWDP---------SSGNLKCTLEGPG 149
++ GH+ V+SLA + + S D + W P S G LEG
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
V V+ G+ ++ S D ++ +WN F GH V F+PD + I +G
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 210 SDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNIT 266
D LRVWN K GE +H + RG HT+ ++C+ S D+ + +SG D V + ++
Sbjct: 128 GRDNALRVWNVK-GECMHTLSRGA--HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 267 TGKV 270
TG++
Sbjct: 185 TGRL 188
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Query: 62 GHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
H+D V V SP+ DA ++ +GG D+ W + G ++++GH + V+S+ S DG
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
L AS DG+ ++WD + G + G + + + P + + A +E ++
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAATEKGIRIFDLENK 268
Query: 181 AAYLNMFSGH-GSSVTCGD-----FTPDGKTICTGSDDATLRVW 218
+ + H GS + ++ DG T+ +G D +RVW
Sbjct: 269 DIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
+ I +GH+ SV C D ++ TG D W +N G+ + + H ++V L
Sbjct: 164 ECKRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 115 FSMDGQLLASGGLDGLVQIWD---PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
F + ++ + D + +WD P+ L+ L G V V + + +++ S D
Sbjct: 221 F--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDR 276
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
T+ +WN ++ +GH + C + + + +GS D T+R+W+ + G + V+ G
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
H E + C I D+ +SG+ DG + +
Sbjct: 335 HE---ELVRC--IRFDNKRIVSGAYDGKIKV 360
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 14/202 (6%)
Query: 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
V C D + +G D+ W N + + GH SV L D +++ +G D
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDS 193
Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--- 186
V++WD ++G + TL V + ++ +++ S+D ++ +W+ + +
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH ++V DF D K I + S D T++VWN + E + + G H G+ CL
Sbjct: 252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACLQYR- 305
Query: 247 DSTLALSGSKDGSVHMVNITTG 268
L +SGS D ++ + +I G
Sbjct: 306 -DRLVVSGSSDNTIRLWDIECG 326
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
D + I +G D T+++W+ + E ++ GH T + CL D + ++GS D +V
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGH---TGSVLCL--QYDERVIITGSSDSTVR 196
Query: 262 MVNITTGKV 270
+ ++ TG++
Sbjct: 197 VWDVNTGEM 205
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
+ P++ S SD C D +ATG D W I +QGH+ +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSE 169
SL + G L SG D V+IWD +G TL GV V+ P G + AGS
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 170 DSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
D V +W+++ + +GH SV FT DG+++ +GS D ++++WN ++
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 223 GEN 225
N
Sbjct: 288 ANN 290
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 75/182 (41%), Gaps = 25/182 (13%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------GHKDSVSSLAFSM 117
D V +VA SP D +A G D W G + GHKDSV S+ F+
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 118 DGQLLASGGLDGLVQIWD------------PSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
DGQ + SG LD V++W+ P+SG + T G V V+ +L
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTC------GDFTPDGKTICTGSDDATLRVWN 219
+GS+D V W+ L M GH +SV P+ TGS D R+W
Sbjct: 327 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Query: 220 PK 221
K
Sbjct: 387 YK 388
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM- 117
I GH ++YS+ P+ LV +G GD W + G S +D V+++A S
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPG 217
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSED 170
DG+ +A+G LD V++WD +G L L+ G V V + G V++GS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 171 STVWMWNADRAAYLN------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
+V +WN A + + GH V T + + I +GS D + W
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 219 NPKSGENIHVIRGH 232
+ KSG + +++GH
Sbjct: 338 DKKSGNPLLMLQGH 351
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-------------- 151
H V + FS DG+ LA+G + Q++ S G+L L
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 152 ----VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
+ V + P G + G+ED + +W+ + + + GH + D+ P G +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNIT 266
+GS D T+R+W+ ++G+ + +G+T + +S D +GS D +V + +
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE----DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 267 TG 268
TG
Sbjct: 238 TG 239
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------ 104
E+ D +GH D VYSV + D V +G D W + + S+ +
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 105 ------GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV--- 155
GHKD V S+A + + + + SG D V WD SGN L+G V V
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
Query: 156 ---SWHPRGHIVLAGSEDSTVWMWNADRAA 182
S P ++ GS D +W + A
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + G H ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWN 219
+WN + A F GH V C F P D T +G D T++VW+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM- 117
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 118 -DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
D + + D ++IWD + + TLEG V + +HP I+++GSED T+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 177 NA 178
N+
Sbjct: 256 NS 257
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVN 264
V + N
Sbjct: 121 VKLWN 125
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + G H ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWN 219
+WN + A F GH V C F P D T +G D T++VW+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM- 117
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 118 -DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
D + + D ++IWD + + TLEG V + +HP I+++GSED T+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 177 NA 178
N+
Sbjct: 256 NS 257
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVN 264
V + N
Sbjct: 121 VKLWN 125
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + G H ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWN 219
+WN + A F GH V C F P D T +G D T++VW+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM- 117
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 118 -DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
D + + D ++IWD + + TLEG V + +HP I+++GSED T+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 177 NA 178
N+
Sbjct: 256 NS 257
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVN 264
V + N
Sbjct: 121 VKLWN 125
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + G H ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 3/166 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVW 218
+WN + A F GH V C F P D T +G D T++VW
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFS 116
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 117 M--DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
D + + D ++IWD + + TLEG V + +HP I+++GSED T+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 175 MWNA 178
+WN+
Sbjct: 254 IWNS 257
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---IRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVN 264
V + N
Sbjct: 121 VKLWN 125
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 68 YSVACSPTDATL-VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL--AFSMDGQLLAS 124
Y ACS T++ + + T GD W + G GH V L A S G S
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN--ADR-- 180
GG D +WD SG E V V ++P G +GS+D+T +++ ADR
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
A Y G+S DF+ G+ + G +D T+ VW+ G + ++ GH ++
Sbjct: 276 AIYSKESIIFGASSV--DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR---VS 330
Query: 241 CLTISADSTLALSGSKDGSVHM 262
L +S D T SGS D ++ +
Sbjct: 331 TLRVSPDGTAFCSGSWDHTLRV 352
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 60 FSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
F GH +V + +P++ +GG D K W + G + H+ V+S+ +
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS 251
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G ASG D +++D + + E G V + G ++ AG D T+ +W
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
+ + + +++ GH + V+ +PDG C+GS D TLRVW
Sbjct: 312 DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRI------NQGDWASEIQGHKDSVSSLAFS-MDG 119
V + A +P+ +A GG D+K + + N + H + +S+ +F+ D
Sbjct: 109 VMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWN 177
Q+L + G DG +WD SG L + G G V + P G+ ++G D +W+
Sbjct: 168 QILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ F H S V + P G +GSDDAT R+++ ++ + I
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIF 285
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF 275
G + + S L +G D ++++ ++ G + F
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + V + + D + + S DG V +WD + N + + P V ++ P G
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 163 IVLAGSEDSTVWMW------NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
+ G D+ ++ N + AA + H + ++ FT I T S D T
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 217 VWNPKSGENIHVIRGH 232
+W+ +SG+ + GH
Sbjct: 180 LWDVESGQLLQSFHGH 195
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL+G G V + W +++ S+D V +W++ + + + V + P G
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 204 KTICTGSDDATLRVWNPKSGENIHVI---RGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
I G D V+ +N ++ + HT L+ + + L+ S DG+
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 261 HMVNITTGKV 270
+ ++ +G++
Sbjct: 179 ALWDVESGQL 188
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ Y C D + T GD W I G + GH V SL+ + D
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+L SG D ++WD G + T G + + + P G+ GS+D+T ++ D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
A + + ++ CG F+ G+ + G DD VW+ + V+ GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
++CL ++ D +GS D + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKD 257
H G+T ++ S L L+G D
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
+ E HT + L+++ D+ L +SG+ D S + ++ G
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL G + + W ++++ S+D + +W++ ++ S V + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 204 KTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTC---------LTISADSTLAL 252
+ G D ++N K+ E N+ V R HT L+C +T S D+T AL
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ Y C D + T GD W I G + GH V SL+ + D
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+L SG D ++WD G + T G + + + P G+ GS+D+T ++ D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
A + + ++ CG F+ G+ + G DD VW+ + V+ GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
++CL ++ D +GS D + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKD 257
H G+T ++ S L L+G D
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
+ E HT + L+++ D+ L +SG+ D S + ++ G
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL G + + W ++++ S+D + +W++ ++ S V + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 204 KTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTC---------LTISADSTLAL 252
+ G D ++N K+ E N+ V R HT L+C +T S D+T AL
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ Y C D + T GD W I G + GH V SL+ + D
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+L SG D ++WD G + T G + + + P G+ GS+D+T ++ D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
A + + ++ CG F+ G+ + G DD VW+ + V+ GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
++CL ++ D +GS D + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKD 257
H G+T ++ S L L+G D
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
+ E HT + L+++ D+ L +SG+ D S + ++ G
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL G + + W ++L+ S+D + +W++ ++ S V + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 204 KTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTC---------LTISADSTLAL 252
+ G D ++N K+ E N+ V R HT L+C +T S D+T AL
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ Y C D + T GD W I G + GH V SL+ + D
Sbjct: 150 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 207
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+L SG D ++WD G + T G + + + P G+ GS+D+T ++ D
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 265
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
A + + ++ CG F+ G+ + G DD VW+ + V+ GH
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
++CL ++ D +GS D + + N
Sbjct: 326 ---VSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 99 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 157
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 158 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 275
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKD 257
H G+T ++ S L L+G D
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 180
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
+ E HT + L+++ D+ L +SG+ D S + ++ G
Sbjct: 181 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL G + + W ++++ S+D + +W++ ++ S V + P G
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 204 KTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTC---------LTISADSTLAL 252
+ G D ++N K+ E N+ V R HT L+C +T S D+T AL
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ Y C D + T GD W I G + GH V SL+ + D
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
+L SG D ++WD G + T G + + + P G+ GS+D+T ++ D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
A + + ++ CG F+ G+ + G DD VW+ + V+ GH
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
++CL ++ D +GS D + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKD 257
H G+T ++ S L L+G D
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
+ E HT + L+++ D+ L +SG+ D S + ++ G
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL G + + W ++L+ S+D + +W++ ++ S V + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 204 KTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTC---------LTISADSTLAL 252
+ G D ++N K+ E N+ V R HT L+C +T S D+T AL
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFW-------RINQGDWASEIQGHKDSVSSL 113
+ H + SVA P +L+A G D W R + D + I+GH++ V +
Sbjct: 55 TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 114 AFSMDGQLLASGGLDGLVQIW--DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSE 169
A+S DG LA+ D V IW D S +C L+ V+ V WHP ++ + S
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 170 DSTVWMWNA--DRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWN 219
D TV +W D + + +GH +V DF T +C+GSDD+T+RVW
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSW 157
HK ++ S+A+ LLA+G D V IW +L +EG V+ V+W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 158 HPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
G+ + S D +VW+W D + +++ H V + P + + S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 214 TLRVWNPKSG--ENIHVIRGHP 233
T+R+W E + V+ GH
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHE 197
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 62 GHSDEVYSVAC---SPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFS 116
H D ++SVA ++ V TG DD K + WR + D ++GH+ V S+ S
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 117 MDGQLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEW-VSWHPRGHIVLAGSEDSTVW 174
+ AS LD +++WD +G +K GP W +++ P + G+ V
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTHVGKVN 147
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
++ + G + ++PDGK + +G+ D + +++ +G+ +H + GH
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
+ LT S DS L ++ S DG + + ++
Sbjct: 208 ---PIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
+ +++A SP D+ +ATG K + + G + + S+A+S DG+ LASG
Sbjct: 124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
+DG++ I+D ++G L TLEG + +++ P +++ S+D + +++ A
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
SGH S V F PD + S D +++VW+ + +H H
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GH V SV S T + A+ D W + G I +LAFS D
Sbjct: 76 LEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
Q LA+G G V I+ SG + +L+ G + +++ P G + +G+ D + +++
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
L+ GH + F+PD + + T SDD +++++ + + GH
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
+ S+A SP D +A+G D + I G ++GH + SL FS D QLL +
Sbjct: 167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
DG ++I+D NL TL G V V++ P ++ S D +V +W+ ++
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
F H V + +G I + DD + +++
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 164 VLAGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
V+ GS D VW W +R GH V D + + S DA +R+W+ +
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
+G+ I I P L S DS +G+ G V++ + +GK
Sbjct: 111 NGKQIKSIDAGPVDA---WTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
+ ++GH SV + + + +G D +++++D + L G GGV W +
Sbjct: 115 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV-WALKYAH 172
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218
G I+++GS D TV +W+ + ++F GH S+V C D + K I TGS D TL VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 219 N-------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSV 260
P GE H +PY L + T+S + +SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SM 117
SGH V+ A ++ +G D W I +G +GH +V L
Sbjct: 158 LSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 118 DGQLLASGGLDGLVQIWD-------PSSGN----------------LKCTLEGPGGGVEW 154
+ + + +G D + +W P G L G V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS H G+IV++GS D+T+ +W+ + L + SGH + + + K + S D T
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+R+W+ ++GE ++ ++GH L L +D L +S + DGS+
Sbjct: 334 IRIWDLENGELMYTLQGHT----ALVGLLRLSDKFL-VSAAADGSIR 375
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
+ GH V +V+ +V +G D+ W + Q + GH D + S + +
Sbjct: 265 VLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+ S +D ++IWD +G L TL+G V + + +++ + D ++ W+A
Sbjct: 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA 379
Query: 179 DRAAYLNMFSGHGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ Y FS H ++++ F + +GS++ ++N +SG+ +H
Sbjct: 380 N--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVH 426
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+I SGH+D +YS ++ D W + G+ +QGH V L S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS- 361
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ L S DG ++ WD + + K + +++ +I+++GSE+
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-ITTFYVSDNILVSGSEN 412
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 78 TLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134
TL+A+ GGD + W W + +GH+ +V +A+S G LAS D IW
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 135 DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------ 180
+ + +C TLEG V+ V+W P G+++ S D +VW+W D
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 181 -------------------AAY----------------LNMFSGHGSSVTCGDFTPDGKT 205
A+Y GH S+V F P G+
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 206 ICTGSDDATLRVWN 219
+ + SDD T+R+W
Sbjct: 209 LASCSDDRTVRIWR 222
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFS 116
GH +EV SVA +P+ L+AT D + W +++ D S + H V + +
Sbjct: 101 LEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+LLAS D V+++ + C TLEG V +++ P G + + S+D TV
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210
+W G+ V C P K ICT S
Sbjct: 220 IWR-------QYLPGNEQGVACSGSDPSWKCICTLS 248
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 102 EIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
+ H DS LA++ G LLAS G D ++IW + C EG V V+W
Sbjct: 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 158 HPRGHIVLAGSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
P G+ + + S D+T +W N D + GH + V + P G + T S D ++
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VCCLN 274
VW + + HT+ + + L S S D +V + VCC
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189
Query: 275 FQ 276
+
Sbjct: 190 LE 191
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFS 116
+ + H+ +V V P+ L+A+ DD +R + DW + ++GH+ +V SLAF
Sbjct: 145 VLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 117 MDGQLLASGGLDGLVQIW 134
GQ LAS D V+IW
Sbjct: 204 PSGQRLASCSDDRTVRIW 221
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 24/193 (12%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
+ ++GH SV + + + +G D ++++D + L G GGV W +
Sbjct: 115 TTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV-WALKYAH 172
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218
G I+++GS D TV +W+ + ++F GH S+V C D + K I TGS D TL VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 219 N-------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSV 260
P GE H +PY L + T+S + +SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTL 292
Query: 261 HMVNITTGKVCCL 273
+ ++ K CL
Sbjct: 293 IVWDVAQXK--CL 303
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 34/227 (14%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SM 117
SGH V+ A ++ +G D W I +G +GH +V L
Sbjct: 158 LSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 118 DGQLLASGGLDGLVQIWD-------PSSGN----------------LKCTLEGPGGGVEW 154
+ + + +G D + +W P G L G V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT 275
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS H G+IV++GS D+T+ +W+ + L + SGH + + + K + S D T
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+R+W+ ++GE + ++GH L L +D L +S + DGS+
Sbjct: 334 IRIWDLENGELXYTLQGHT----ALVGLLRLSDKFL-VSAAADGSIR 375
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
+ GH V +V+ +V +G D+ W + Q + GH D + S + +
Sbjct: 265 VLRGHXASVRTVSGH---GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+ S D ++IWD +G L TL+G V + + +++ + D ++ W+A
Sbjct: 322 RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA 379
Query: 179 DRAAYLNMFSGHGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ Y FS H ++++ F + +GS++ ++N +SG+ +H
Sbjct: 380 N--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVH 426
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+I SGH+D +YS ++ D W + G+ +QGH V L S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCIS-ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS- 361
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ L S DG ++ WD + + K + +++ +I+++GSE+
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-ITTFYVSDNILVSGSEN 412
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+QGH V LA+ DG LASGG D +VQIWD S K T V+ V+W P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 163 IVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT--GSDDATLRV 217
+LA G+ D + WNA A +N GS VT ++P K I + G D L +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 218 WN 219
W+
Sbjct: 332 WS 333
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
V+S+ +S DG L+ G +GLV I+D S T+ G V +SW+ H++ +GS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 170 DSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
+ + A + + GH S V + DG + +G +D +++W+ +S
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
H + + ++ G+ D +H N TG
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 71/194 (36%), Gaps = 59/194 (30%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGG--DDKGFFW------RINQGDWASEIQGHKDSVSS 112
+ H+ V +VA P + L+ATGGG D + FW R+N D S+ V+S
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-------VTS 308
Query: 113 LAFSMDGQLLAS--GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
L +S + + S G D + IW SS L ++ P
Sbjct: 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP---------------------- 346
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
H + V +PDG+ + T + D L+ W G+ HV R
Sbjct: 347 ------------------AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD--HVKR 386
Query: 231 GHPYHTEGLTCLTI 244
P + +TI
Sbjct: 387 PIPITKTPSSSITI 400
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 298 GQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 298 GQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ ++ ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 298 GQTLFAGYTDNVIRVWQVMTAN 319
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 127 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 182
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 237
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 199
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 257
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 258 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 292 GQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 20/240 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + +++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
H + LT S D TL S KDG + + N+ K YT A D F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX-----YTLSAQDEVFSL 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
F GH+ + ++ SP D TL+A+ G D + W + A +D V SLAFS +
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKK-AXYTLSAQDEVFSLAFSPNR 249
Query: 120 QLLASGGLDGL-VQIWDPSS--GNLKCTLEGPGGGVE----WVSWHPRGHIVLAGSEDST 172
LA+ G+ V DP +L+ G E ++W G + AG D+
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 173 VWMWNADRA 181
+ +W A
Sbjct: 310 IRVWQVXTA 318
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 298 GQTLFAGYTDNVIRVWQVXTAN 319
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDG 119
SGH+ +V S++ + +A + +G D W + A GH+ ++S+ F DG
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 120 QLLASGGLDGLVQIWDPSSG-NLKCTLEGPGGG------VEWVSWHPRGHIVLAGSEDST 172
Q +G DG +++D +G L+ P V V++ G ++ AG +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 173 VWMWNADRAAYL----NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
++W+ A + + + H ++C + DG +CTGS D L++W
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 62/264 (23%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS +VYS+ +P + + + D + W I+ H V AF+ +G
Sbjct: 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 120 QLLASGGLDGLVQIWDPSS-----GNLKCTL-----EGPGGGVEWV-------------- 155
Q +A GGLD I++ SS GN+ + +G ++V
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 156 -----------------SWHPRGH---------------IVLAGSEDSTVWMWNAD-RAA 182
S P GH + ++GS D+TV +W+ +
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG---- 238
+ + GH + F PDG+ TGSDD T R+++ ++G + V P +
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 239 LTCLTISADSTLALSGSKDGSVHM 262
+T + S L +G +G ++
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYV 324
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 15/221 (6%)
Query: 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEI-QGHKDSVS 111
+ + +GH S P T + TG GD W + G + SE GH V
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 112 SLAF-SMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
SL+ S++ + SG D V++WD + T G G + V + P G GS+
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 170 DSTVWMWNADRAAYLNMFSGHGSS-------VTCGDFTPDGKTICTGSDDATLRVWNPKS 222
D T +++ L +++ VT F+ G+ + G + VW+
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 223 GENIHVIRGHPYHTEG-LTCLTISADSTLALSGSKDGSVHM 262
E + + EG ++CL +S+D + +GS D ++ +
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+QGH V SL ++ + + S DG + +W+ + ++ V ++ P G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 163 IVLAGSEDSTVWMWN----ADRAAYL---NMFSGHGSSVTCGDFTPDGKT-ICTGSDDAT 214
V G DS ++N ADR + + +GH + + PD +T + TGS D T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 215 LRVWNPKSGENIHVIRGHPY---HTEGLTCLTI-SADSTLALSGSKDGSVHM--VNITTG 268
+W+ +G+ I + G + HT + L+I S ++ + +SGS D +V + + IT+
Sbjct: 182 CVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 269 KV 270
V
Sbjct: 241 AV 242
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL+G G V + W P + +++ S+D + +WNA + + H V F P+G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 204 KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTEGLTCLTISADSTLALSGSK 256
+++ G D+ ++N S + V+ GH + +C + T ++GS
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS--SCQYVPDQETRLITGSG 178
Query: 257 DGSVHMVNITTGK 269
D + + ++TTG+
Sbjct: 179 DQTCVLWDVTTGQ 191
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 15/172 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI------------NQGDWASEIQGHK 107
F GH EVYSVA SP D + + G + + W I N DW S ++
Sbjct: 114 FVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
S+ AS G DG +++W+ ++ ++ T + V +S P G + G
Sbjct: 173 IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATG 231
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+D + +W+ Y GS++ F P + + G+D ++++N
Sbjct: 232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFN 282
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 35/249 (14%)
Query: 59 IFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQ-------GDWASEIQGH 106
I GHSD V S+ + D+ ++ +G D W++ + G + GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166
VS LA S + S D +++WD +G G V V++ P +L+
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 167 GSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKT----------ICTGSDDAT 214
+ + +WN + H V+C ++P K+ + D
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
L+VWN N + H + L+IS + +G KD + + +I LN
Sbjct: 196 LKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-------LN 244
Query: 275 FQYTCVAYD 283
Y +D
Sbjct: 245 LTYPQREFD 253
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSW 157
+ GH V L ++ DG+ LASGG D LV +W + G L+ T G V+ V+W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAW 204
Query: 158 HPRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 214 -TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 264 NQLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 310
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 146 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG---SE 169
+LA+GG D ++IW+ SG ++ + W P +++G ++
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQ 263
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ V +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 264 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 86 DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
D+ + W + GD +Q + + +SS+A+ +G LA G VQ+WD
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
+ V +SW+ +I+ +GS + + A ++ SGH V + PD
Sbjct: 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 203 GKTICTGSDDATLRVWNPKSGE 224
G+ + +G +D + VW GE
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGE 183
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
VLA + D++V++W+A L + G ++ + +G + G+ A +++W+ +
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+ + + H L S +S + SGS+ G +H
Sbjct: 98 QQKRLRNMTSHSARVGSL-----SWNSYILSSGSRSGHIH 132
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
+ GH V L ++ DG+ LASGG D LV +W + G T G V+ V+W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 344
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 345 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 390
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 226 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG---SE 169
+LA+GG D ++IW+ SG ++ V + W P +++G ++
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQ 343
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ V +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 344 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 86 DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
D+ + W + GD +Q + + +SS+A+ +G LA G VQ+WD
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
+ V +SW+ +I+ +GS + + A ++ SGH V + PD
Sbjct: 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 203 GKTICTGSDDATLRVWNPKSGE 224
G+ + +G +D + VW GE
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGE 263
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
VLA + D++V++W+A L + G ++ + +G + G+ A +++W+ +
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+ + + H L S +S + SGS+ G +H
Sbjct: 178 QQKRLRNMTSHSARVGSL-----SWNSYILSSGSRSGHIH 212
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
+ GH V L ++ DG+ LASGG D LV +W + G T G V+ V+W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 355
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 356 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 401
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 237 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG---SE 169
+LA+GG D ++IW+ SG ++ V + W P +++G ++
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQ 354
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ V +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 355 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 86 DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
D+ + W + GD +Q + + +SS+A+ +G LA G VQ+WD
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
+ V +SW+ +I+ +GS + + A ++ SGH V + PD
Sbjct: 195 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 203 GKTICTGSDDATLRVWNPKSGE 224
G+ + +G +D + VW GE
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGE 274
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
VLA + D++V++W+A L + G ++ + +G + G+ A +++W+ +
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+ + + H L S +S + SGS+ G +H
Sbjct: 189 QQKRLRNMTSHSARVGSL-----SWNSYILSSGSRSGHIH 223
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------GDWASEIQ 104
+HI GH E+ +V+ SP ++AT D + W + + G + ++
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 105 ----GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEW- 154
H V+ L F+ DG L + G D +++W+ S+G N G+++
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS V ST+ ++ + M GH +V C F + + + +GS D
Sbjct: 299 VSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357
Query: 215 LRVWNPKSGENI 226
+ W P E +
Sbjct: 358 ILAWVPSLYEPV 369
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNAD 179
L+A G VQ+ D SG+ L+G + VSW PR +LA S DS V +W+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 180 RA----------------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
RA A + + H V FT DG + T D +R+WN +G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 224 ENIHVIRG 231
EN V G
Sbjct: 278 ENTLVNYG 285
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLK--------CTL--EGP---GGGVEWVSWHPRGH- 162
++G+ + SGG DG++ ++D + + + C++ + P VE V W+P
Sbjct: 54 VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC---TGSDDATLRVWN 219
+ + S D T+ +W+ + ++F+ +V +P C G+ +++ +
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172
Query: 220 PKSGENIHVIRGH 232
KSG H+++GH
Sbjct: 173 LKSGSCSHILQGH 185
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W N + + H V+
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 402 IMQVW--QMAENVY 413
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 265 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKTI 206
+SW+P + +L+ S+D T+ +W+ + N+F+GH + V + +++
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 207 C-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVN 264
+ +DD L +W+ ++ HT + CL+ + S L +GS D +V + +
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 265 ITTGKVCCLNFQ 276
+ K+ +F+
Sbjct: 307 LRNLKLKLHSFE 318
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
D+ IF+GHS V VA +L + D K W R N S + H V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK T E + V W P +LA S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
+++W + ENI+
Sbjct: 400 IMQIW--QMAENIY 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W N + + H V+
Sbjct: 224 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 404 IMQVW--QMAENVY 415
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 267 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKTI 206
+SW+P + +L+ S+D T+ +W+ + N+F+GH + V + +++
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 207 C-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVN 264
+ +DD L +W+ ++ HT + CL+ + S L +GS D +V + +
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 265 ITTGKVCCLNFQ 276
+ K+ +F+
Sbjct: 309 LRNLKLKLHSFE 320
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 103 IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
+ GH V +A+ + ++ASG D V +W+ G L TLEG V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
V+WHP ++L+ D+ + +W+ A + H ++ D++ DG ICT
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271
D +RV P+ G T+ A+ G++ VH V ++ GK+
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 CLNF 275
F
Sbjct: 236 TTGF 239
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSM 117
GH+ V VA PT ++ + G D+ W + G + H D++ S+ +S
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
DG L+ + D V++ +P G + + P G V
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W N + + H V+
Sbjct: 226 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 406 IMQVW--QMAENVY 417
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 269 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKTI 206
+SW+P + +L+ S+D T+ +W+ + N+F+GH + V + +++
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 207 C-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVN 264
+ +DD L +W+ ++ HT + CL+ + S L +GS D +V + +
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 265 ITTGKVCCLNFQ 276
+ K+ +F+
Sbjct: 311 LRNLKLKLHSFE 322
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHK-- 107
+S FS HS V +V + ++A+GG + + F W +N+ ++ G
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
Query: 108 --DSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEW----VSWH 158
D V SLA++ + AS G IWD + + + P G++ V WH
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 159 PRGHIVLAGS----EDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFT-PDGKTICTGSD 211
P+ +A + D ++ +W+ A + GH + D+ D + +
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 212 DATLRVWNPKSGENI 226
D T+ +WNP+S E +
Sbjct: 284 DNTVLLWNPESAEQL 298
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 50 TEQPDDSTHIFSGHS----DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------W 99
TE P + T + G S DEV S+A + + A + A+ G + W + +
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY 206
Query: 100 ASEIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWDPSSGN--LKCTLEGPGGGVE 153
S G K +S + + + D + IWD + N L+ +G G+
Sbjct: 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266
Query: 154 WVSW-HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
+ W H H++L+ D+TV +WN + A L+ F G+ F P+
Sbjct: 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
D+ IF+GHS V VA +L + D K W R N S + H V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK T E + V W P +LA S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
++W + ENI+
Sbjct: 400 IXQIW--QXAENIY 411
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 32/182 (17%)
Query: 105 GHKDSVSSLAF-SMDGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEWVS 156
GH V +A+ + ++ASG D V +W+ G L TLEG V V+
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 157 WHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDA 213
WHP ++L+ D+ + +W+ A + H ++ D++ DG ICT D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273
+RV P+ G T+ A+ G++ VH V ++ GK+
Sbjct: 199 RVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKILTT 237
Query: 274 NF 275
F
Sbjct: 238 GF 239
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSM 117
GH+ V VA PT ++ + G D+ W + G + H D++ S+ +S
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
DG L+ + D V++ +P G + + P G V
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ IF+GH+ V V+ +L + D K W N + + H V+
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 338 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 397
Query: 214 TLRVWNPKSGENIH 227
++VW + ENI+
Sbjct: 398 IMQVW--QMAENIY 409
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 155 VSWHPR--GHIVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKT 205
+SW+P GH+ L+ S+D T+ +W+ +F+GH + V + ++
Sbjct: 183 LSWNPNLSGHL-LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 206 IC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMV 263
+ + +DD L +W+ +S HT + CL+ + S L +GS D +V +
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 264 NITTGKVCCLNFQ 276
++ K+ +F+
Sbjct: 302 DLRNLKLKLHSFE 314
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 25/224 (11%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+G + + SV P+ + +G D+ + + S H V S+ ++ DG
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDST 172
L AS G DG + +++ G E G V ++W P G + + S D T
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPD--------GKTICTGSDDATLRVWNPKSGE 224
+ +WN A L + ++ G D + + + S + + NP+ G
Sbjct: 263 IKIWNV---ATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
V GH + +T L+ SAD S +G ++ +I+TG
Sbjct: 316 IDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGS 168
S +A S D Q +A GG D V ++ S ++ T+ P + V++ G ++A
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNGAFLVATD 510
Query: 169 EDSTVWMW---NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN-PKSGE 224
+ V + N A+ N ++ H + V C ++PD + TGS D ++ VWN K +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
+ +I+G H I + T +S +D ++ N+
Sbjct: 571 HPIIIKG--AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 138 SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196
+G L G + V + P R +++GS+D+TV ++ + + F H V
Sbjct: 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195
Query: 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR----GHPYHTEGLTCLTISADSTLAL 252
+ PDG + D T+ ++N G V + H+ + LT S D T
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 253 SGSKDGSVHMVNITTGKV 270
S S D ++ + N+ T KV
Sbjct: 256 SASADKTIKIWNVATLKV 273
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQ 120
H E+ SVA S A LVAT + N + A + H V+ +++S D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 121 LLASGGLDGLVQIWD---PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
LA+G LD V +W+ PS + V V W IV AG +DS + WN
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QDSNIKFWN 608
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRM 195
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 291 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 351 IAVCDDASIWRWDRLR 366
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 290 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 349
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 350 IAVCDDASIWRWDRLR 365
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FS D ++LA G G + +WD KCT G + S+ I+
Sbjct: 290 MRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 349
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 350 IAVCDDASIWRWDRLR 365
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRM 190
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 286 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 345
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 346 IAVCDDASIWRWDRLR 361
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRM 231
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 327 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 386
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 387 IAVCDDASIWRWDRLR 402
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
+ S DG L GG + IWD + +K L ++ P + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
D + +W+ + F GH +C D + DG + TG D T+R W+ + G +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
Query: 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127
Y++A SP D+ + + D W ++ + QGH D S + S DG L +GGL
Sbjct: 145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187
D V+ WD G + + + + P G + G E S V + + ++ +
Sbjct: 204 DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247
H S V F GK + D L W G +I + + + IS D
Sbjct: 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVD 317
Query: 248 STLALSGSKDGSVHMVNI 265
++GS D + +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
+E+ + +LA S D ++ S DG + +WD + L +G G +
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217
G + G D+TV W+ L + G + P G+ + G + + + V
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG-YCPTGEWLAVGMESSNVEV 250
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 158 HPRGHIVLAGSEDSTVW----MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
+P H+ G VW N + L+ + +C PDG T+ G + +
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC-KLLPDGCTLIVGGEAS 119
Query: 214 TLRVWN---PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
TL +W+ P + P L IS DS + S DG++
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCCSDGNI 165
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 90 FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
F ++I + ++ GH +S L F+ +LL S DG ++IW +GN + G
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
+ SW V++ S D +V +W+ + L + G + G + DG+
Sbjct: 290 QSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
Query: 210 SDDATLRVWNPK 221
D + V++ K
Sbjct: 349 FMDGQVNVYDLK 360
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 22/186 (11%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGG------------- 150
H+ + S+ ++ DG + S ++ + +W+ SG + L+ GG
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 151 -GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
GV+ V W V+ G + + ++++ GH ++ +F K + +
Sbjct: 208 LGVD-VEWVDDDKFVIPGPKGA-IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
SDD TLR+W+ +G + + G H++ + + D + +S S DGSV + ++
Sbjct: 266 SDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVGDDKV-ISCSMDGSVRLWSLKQNT 321
Query: 270 VCCLNF 275
+ L+
Sbjct: 322 LLALSI 327
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251
+ VTC ++ DG +I TG ++ LR+WN K+G ++V+ +H + + + D T
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN---FHRAPIVSVKWNKDGTHI 164
Query: 252 LSGSKDGSVHMVNITTGKVC 271
+S + + N+ +G V
Sbjct: 165 ISMDVENVTILWNVISGTVM 184
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 34/230 (14%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGH------------ 106
D + S +P D +++A G + RI + D W I
Sbjct: 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105
Query: 107 --KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HI 163
+ V+ LA+S DG + +G +G +++W+ +G L L + V W+ G HI
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGH---GSSVTCGDFTPDGK--TICTGSDDATLRVW 218
+ E+ T+ +WN + F GSS+ + + DG DD +
Sbjct: 165 ISMDVENVTI-LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 219 NPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHM 262
PK ++ I H ++ L + + L LS S DG++ +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
H D V LA DG ++ DGL+++ D +G++ T EG V + P G IV
Sbjct: 183 HNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
G ED TV +W+ + + + + S+ D +G I GS D +R+++ +
Sbjct: 242 CG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDII-VGSSDNLVRIFSQEKSR 298
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV--- 110
+D + GH V S++ +V +G D W+ +G +Q H SV
Sbjct: 94 EDPLYTLIGHQGNVCSLSFQDG---VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGSE 169
++FS + L AS D +++W + + T G V ++ GH + + S
Sbjct: 149 KVVSFSENKFLTASA--DKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSN 203
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
D + + + L + GH S V C P+G + G +D T+R+W+ ++G VI
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVI 262
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST---VWMWNA 178
+AS DG V++W L + G + V + ++L G +D+ V ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
L GH +V F DG I +GS D T +VW K G ++ ++ H
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSF-QDGVVI-SGSWDKTAKVW--KEGSLVYNLQAHNASVWD 147
Query: 239 LTCLTISADSTLALSGSK 256
++ S + L S K
Sbjct: 148 AKVVSFSENKFLTASADK 165
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
G +G +++ D S+ NL+ + + + + + P G +++ S+D + +W+ +
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
GH ++VT G+ + + S D T+R+W +G IH + +P+
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 242 LTISADSTL-ALSGSKDGSVHM 262
L + D L +S SK ++
Sbjct: 231 LFVGTDRQLHEISTSKKNNLEF 252
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
Q H ++ L F G+ L S D ++IW G+ TL G V ++ RG
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 164 VLAGSEDSTVWMW 176
VL+ S D T+ +W
Sbjct: 193 VLSASLDGTIRLW 205
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
I H E+ + P+ L+++ D + W + G + GH+ +V+ +A
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 188
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
G+ + S LDG +++W+ +G T E P GV ++
Sbjct: 189 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
G +G +++ D S+ NL+ + + + + + P G +++ S+D + +W+ +
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
GH ++VT G+ + + S D T+R+W +G IH + +P+
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 242 LTISADSTL-ALSGSKDGSVHM 262
L + D L +S SK ++
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEF 255
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
Q H ++ L F G+ L S D ++IW G+ TL G V ++ RG
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 164 VLAGSEDSTVWMW 176
VL+ S D T+ +W
Sbjct: 196 VLSASLDGTIRLW 208
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
I H E+ + P+ L+++ D + W + G + GH+ +V+ +A
Sbjct: 134 IDQAHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
G+ + S LDG +++W+ +G T E P GV ++
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLA 123
V V SP V T G D K + G++ I+ ++ V F++ D Q A
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 124 SGGLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR 180
+ G D +++WD ++ K TL+ G + V G+ +++ S D T+ +
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
L SGH +T P + +GS D + W+ S H
Sbjct: 329 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDH 371
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 10/158 (6%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLA 123
V V SP V T G D K + G++ I+ ++ V F++ D Q A
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 124 SGGLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR 180
+ G D +++WD ++ K TL+ G + V G+ +++ S D T+ +
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
L SGH +T P + +GS D + W
Sbjct: 329 DEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VSWHPRG-HIVLAGSEDSTVWMWN 177
++A+GG DG++ IWD G + +L W V +HP + SED ++W W+
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 178 A--DRAAYLNMFSGHGSSVT 195
A D ++F G S T
Sbjct: 310 ASTDVPEKSSLFHQGGRSST 329
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 108 DSVSSLAFS---MDGQLLASGGLDGLVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGH 162
DS+ L+FS + G L +G V+ W+ S + + G V V W G
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWNP 220
V S D T MW+ + + + H + V + P+ + TGS D TL+ W+
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 221 KSGENIHVIR 230
+S + V++
Sbjct: 159 RSSNPMMVLQ 168
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRG 161
Q H V + +S DG + + D ++WD SS + P + W+ P
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK-APNY 141
Query: 162 HIVLAGSEDSTVWMWN 177
V+ GS D T+ W+
Sbjct: 142 SCVMTGSWDKTLKFWD 157
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 28/196 (14%)
Query: 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
A ++ GH+ ++ + ++ +G LL S D +W +G TL+G G + +
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----HGSSVTCGDF----------TPDGK 204
+ GS D ++ +W+ + + CG++ P
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST---LALSGSKDGSVH 261
I D+ S E IH I H EGL T++ ST ++G KDG +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITH----EGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 262 MVNITTGKVCCLNFQY 277
+++ N++Y
Sbjct: 201 KYDVSN------NYEY 210
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/229 (17%), Positives = 93/229 (40%), Gaps = 22/229 (9%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH + V + + L+ + D W G+ + GH ++ S+
Sbjct: 28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVW 174
+ +G D +++WD S+G T + P V+ V + P G+ LA ++ ++
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 175 MWNADRAAYLNMFSGHGS-------------SVTCGDFTPDGKTICTGSDDATLRVWNPK 221
++ +R + + + + T ++ GK I G D + ++
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
+ N + H + ++ + S D T ++ S+D + +V+++T +V
Sbjct: 206 N--NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI-- 133
D T + G + F+ + +QGH ++++A S G ASGG DG +++
Sbjct: 284 DVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343
Query: 134 WDPSSGNLKCTLEGPGGGVE 153
++ S + K +E E
Sbjct: 344 FEKSYFDFKYDVEKAAEAKE 363
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 29/187 (15%)
Query: 60 FSGHSDEVYSVA-CSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAF 115
+GH V+ V P T++A+ D K W+ G W S+I H SV+S+ +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQW 107
Query: 116 SMD--GQLLASGGLDGLVQI--WDPSSGNLKCTLEGPGGGVEWVSWHP------------ 159
+ G LL DG V + + + ++ GV SW P
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 160 -RGHIVLAGSEDSTV--WMWNADRAAYL--NMFSGHGSSVTCGDFTPD---GKTICTGSD 211
+ G D+ V W +N+D Y+ + GH V ++P + + S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227
Query: 212 DATLRVW 218
D T +W
Sbjct: 228 DRTCIIW 234
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIV 164
H D V +L+ DG SGG D V++WD S + + V V+ P + I
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 165 LAGSEDSTVWMWNADR 180
L+ ED + +W+ +
Sbjct: 198 LSCGEDGRILLWDTRK 213
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 25/118 (21%)
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
G ++G +D +V +W+ + A L ++ H S V C P TI + +D + +W+
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 220 ---PKSGENIHV---------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
PK I + HP + C G + G+V +VNI
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC------------GDETGNVSLVNI 256
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHM 262
K I SD + +W E++ V + Y H + + L++ +D T A+SG KD SV +
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 263 VNITTGKV 270
+++ V
Sbjct: 166 WDLSQKAV 173
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 297
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 227
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 228 SQDRTCIIWTQD 239
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 29/187 (15%)
Query: 60 FSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAF 115
+GH V+ V + P T++A+ D K W+ G W S+I H SV+S+ +
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQW 109
Query: 116 SMD--GQLLASGGLDGLVQI--WDPSSGNLKCTLEGPGGGVEWVSWHP------------ 159
+ G LL DG V + + + ++ GV SW P
Sbjct: 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169
Query: 160 -RGHIVLAGSEDSTV--WMWNADRAAYL--NMFSGHGSSVTCGDFTPD---GKTICTGSD 211
+ G D+ V W +N+D Y+ + GH V ++P + + S
Sbjct: 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229
Query: 212 DATLRVW 218
D T +W
Sbjct: 230 DRTCIIW 236
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 73/209 (34%), Gaps = 52/209 (24%)
Query: 60 FSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFS 116
GH V+ VA + P ++A+ D K WR G W + E GH SV+S+ ++
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 117 MD--GQLLASGGLDGLVQI--------WDPSSGNLKCTLEGPGGGVEWVSW--------- 157
G +LA G DG + + W+ N T+ G VSW
Sbjct: 113 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-----GCNAVSWAPAVVPGSL 167
Query: 158 --HPRGHI------VLAGSEDSTVWMWNADRAAYLN---MFSGHGSSV------------ 194
HP G +G D+ + +W + H V
Sbjct: 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227
Query: 195 --TCGDFTPDGKTICTGSDDATLRVWNPK 221
T + DG+ DDA+ W+PK
Sbjct: 228 TSTIASCSQDGRVFIWTCDDASSNTWSPK 256
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 28/156 (17%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKG--FFWRINQGDWASEIQGHKDSVSS 112
+ +H +GH V SV +P D L+ G D +G W + + ++
Sbjct: 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 113 LAFS-----MDGQLL--------------ASGGLDGLVQIW-DPSSGNLK--CTLEGPGG 150
A S + G L+ ASGG D L+++W + G K LE
Sbjct: 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213
Query: 151 GVEWVSWHPR----GHIVLAGSEDSTVWMWNADRAA 182
V V+W P + + S+D V++W D A+
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
H S V F G+T+C+ D LR W+ K+ E I + H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
H V SL+F+ G+ L S G DG ++ WD + TL
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
H S V F G+T+C+ D LR W+ K+ E I + H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
H V SL+F+ G+ L S G DG ++ WD + TL
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R + +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWV-----SWHPRGHIVLAGS-ED 170
L + ++++ S+ C L P + + +WHPR ++++ G D
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206
+++F G+ + C + P+ I
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 183
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
S + T R+ + K G + V L +SA S + ++G G+V ++N+
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
G ++GS+D + +W+ + L+ + H + VTC +P ++ + S+D + +W+
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 220 ---PKSGENI 226
PK I
Sbjct: 199 TRCPKPASQI 208
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIV 164
H D VS+++ G SG D +++WD + + + V V+ P + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 165 LAGSEDSTVWMWN 177
L+ SED+ + +W+
Sbjct: 186 LSCSEDNRILLWD 198
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWV-----SWHPRGHIVLAGS-ED 170
L + ++++ S+ C L P + + +WHPR ++++ G D
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206
+++F G+ + C + P+ I
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 183
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
S + T R+ + K G + V L +SA S + ++G G+V ++N+
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWV-----SWHPRGHIVLAGS-EDST 172
L + ++++ S + L P + + +WHPR ++++ G D
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 369
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206
+++F G+ + C + P+ I
Sbjct: 370 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 403
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 184
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
S + T R+ + K G + V L +SA S + ++G G+V ++N+
Sbjct: 185 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 239
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
+W HP ++ AG D ++W+ A R F H + TPDG I G
Sbjct: 190 ADWYLAHPEATLI-AGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVT 248
Query: 212 DATLRVW 218
A LR +
Sbjct: 249 IAALRAF 255
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
+W HP ++ AG D ++W+ A R F H + TPDG I G
Sbjct: 190 ADWYLAHPEATLI-AGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVT 248
Query: 212 DATLRVW 218
A LR +
Sbjct: 249 IAALRAF 255
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 66/182 (36%), Gaps = 42/182 (23%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWA--SEIQG 105
E+P HI G + V+ P A V G G + I GD EI+
Sbjct: 5 EKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK 64
Query: 106 HKDSVSSL--AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
K A S+ + LA+G G + IW+ LE P E + +GH
Sbjct: 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWN---------LEAP----EMPVYSVKGHK 111
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
+ + D + + A P+ I TGS D T++VW+P+
Sbjct: 112 EIINAIDGIGGLGIGEGA-------------------PE---IVTGSRDGTVKVWDPRQK 149
Query: 224 EN 225
++
Sbjct: 150 DD 151
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
E G+ + S+ S+ Q LASG +DG V W P++
Sbjct: 40 EKMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTA 76
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 60 FSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF- 115
GH + S++ +P+ L+ATG D + ++I + S + + +S F
Sbjct: 208 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLASEESLTNSNMFD 265
Query: 116 -SMDGQLLASGGLDGLVQIWDPSSGNLKCTL----EGPGGGVEWVSWHPRGHIVLAGSED 170
S D + A G D + NL+ L + G V VSW+ G I+ + +D
Sbjct: 266 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 325
Query: 171 STVWMWNADRAAYLNMF 187
V +W +A Y N F
Sbjct: 326 GKVRLW---KATYSNEF 339
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 60 FSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF- 115
GH + S++ +P+ L+ATG D + ++I + S + + +S F
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLASEESLTNSNMFD 267
Query: 116 -SMDGQLLASGGLDGLVQIWDPSSGNLKCTL----EGPGGGVEWVSWHPRGHIVLAGSED 170
S D + A G D + NL+ L + G V VSW+ G I+ + +D
Sbjct: 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 171 STVWMWNADRAAYLNMF 187
V +W +A Y N F
Sbjct: 328 GKVRLW---KATYSNEF 341
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 71 ACSPTDATLVATGGGDDKGFFWR--------------INQGDWASEIQGHKDSVSSLAFS 116
A +P A ++A +K WR +N DWA+ G K ++ S
Sbjct: 262 ASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK-----VSHS 316
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146
LL +G + L Q W + KC +E
Sbjct: 317 YGYGLLDAGAMVALAQNWTTVAPQRKCIVE 346
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244
N F G +T D G+ S+D ++ + K + + H+ +T +TI
Sbjct: 267 NRFKG----ITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIFKQA--HSFAITEVTI 320
Query: 245 SADSTLALSGSKDGSVHMVNI 265
S DST S S ++H++ +
Sbjct: 321 SPDSTYVASVSAANTIHIIKL 341
>pdb|3KYM|B Chain B, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|D Chain D, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|F Chain F, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|H Chain H, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|J Chain J, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|L Chain L, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|N Chain N, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|P Chain P, Crystal Structure Of Li33 Igg2 Di-Fab
Length = 227
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 26/59 (44%), Gaps = 19/59 (32%)
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEG--------------PGGGVEWVSW-HPRGHI 163
QLL SGG GLVQ S L C G PG G+EWVSW P G I
Sbjct: 3 QLLESGG--GLVQ--PGGSLRLSCAASGFTFSIYPMFWVRQAPGKGLEWVSWIGPSGGI 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,757,085
Number of Sequences: 62578
Number of extensions: 436481
Number of successful extensions: 2134
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 491
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)