Query 023018
Match_columns 288
No_of_seqs 547 out of 3043
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-45 9.8E-50 286.4 17.2 233 52-287 205-439 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3E-43 6.5E-48 273.4 22.3 231 53-287 104-460 (480)
3 KOG0263 Transcription initiati 100.0 9.1E-43 2E-47 292.5 22.2 214 52-269 439-652 (707)
4 KOG0296 Angio-associated migra 100.0 4.2E-41 9.1E-46 259.8 28.0 277 7-285 7-379 (399)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-41 2.3E-46 267.6 17.5 216 61-280 172-389 (459)
6 KOG0279 G protein beta subunit 100.0 2.2E-39 4.7E-44 242.3 26.2 227 55-285 6-244 (315)
7 KOG0279 G protein beta subunit 100.0 3.2E-39 7E-44 241.4 24.7 219 50-274 49-270 (315)
8 KOG0286 G-protein beta subunit 100.0 3.7E-38 8E-43 237.2 27.3 230 50-284 41-283 (343)
9 KOG0263 Transcription initiati 100.0 9.4E-39 2E-43 268.4 21.8 226 59-288 373-629 (707)
10 KOG0315 G-protein beta subunit 100.0 3.2E-36 7E-41 222.0 25.9 224 54-282 73-304 (311)
11 KOG0271 Notchless-like WD40 re 100.0 1.5E-37 3.2E-42 241.8 19.6 207 54-264 190-479 (480)
12 KOG0285 Pleiotropic regulator 100.0 2.2E-37 4.8E-42 238.9 19.9 227 50-281 137-363 (460)
13 KOG0286 G-protein beta subunit 100.0 1.1E-35 2.4E-40 223.9 27.9 231 53-286 86-327 (343)
14 PTZ00421 coronin; Provisional 100.0 5.7E-35 1.2E-39 248.7 32.6 229 58-288 69-317 (493)
15 KOG0284 Polyadenylation factor 100.0 5.9E-38 1.3E-42 245.6 12.6 227 55-286 129-358 (464)
16 KOG0295 WD40 repeat-containing 100.0 1.6E-36 3.5E-41 234.4 19.3 231 52-286 138-384 (406)
17 KOG0273 Beta-transducin family 100.0 1.2E-35 2.5E-40 236.6 24.3 232 47-283 259-502 (524)
18 KOG0282 mRNA splicing factor [ 100.0 2.6E-37 5.7E-42 246.7 14.1 233 52-286 202-482 (503)
19 KOG0266 WD40 repeat-containing 100.0 5.3E-35 1.1E-39 249.5 28.6 221 57-279 151-377 (456)
20 KOG0316 Conserved WD40 repeat- 100.0 9.1E-36 2E-40 218.1 19.9 228 50-285 3-232 (307)
21 KOG0266 WD40 repeat-containing 100.0 4E-35 8.7E-40 250.2 26.6 228 56-284 195-428 (456)
22 KOG0645 WD40 repeat protein [G 100.0 1E-33 2.3E-38 211.1 27.7 211 55-268 5-227 (312)
23 KOG0291 WD40-repeat-containing 100.0 4.3E-34 9.3E-39 239.4 27.0 215 55-274 341-558 (893)
24 PTZ00420 coronin; Provisional 100.0 3.7E-33 8.1E-38 238.9 32.8 231 55-287 65-319 (568)
25 KOG0284 Polyadenylation factor 100.0 7.1E-36 1.5E-40 234.0 12.1 211 64-278 96-306 (464)
26 KOG0772 Uncharacterized conser 100.0 2.3E-34 4.9E-39 231.8 19.7 237 48-285 151-420 (641)
27 cd00200 WD40 WD40 domain, foun 100.0 9.5E-33 2.1E-37 222.4 29.3 224 57-284 2-229 (289)
28 KOG0295 WD40 repeat-containing 100.0 2.8E-34 6E-39 222.1 17.8 229 52-284 96-344 (406)
29 KOG0273 Beta-transducin family 100.0 3.1E-33 6.8E-38 222.8 23.2 215 65-285 236-463 (524)
30 KOG0291 WD40-repeat-containing 100.0 1.7E-32 3.7E-37 229.8 28.1 225 60-285 261-531 (893)
31 KOG0265 U5 snRNP-specific prot 100.0 1.1E-32 2.3E-37 208.4 23.4 233 53-286 36-316 (338)
32 KOG0315 G-protein beta subunit 100.0 2.7E-32 5.9E-37 201.4 24.8 234 51-287 27-267 (311)
33 KOG0643 Translation initiation 100.0 2E-32 4.4E-37 204.0 24.3 223 58-284 4-241 (327)
34 KOG0277 Peroxisomal targeting 100.0 1.7E-33 3.7E-38 208.2 17.7 222 64-288 60-288 (311)
35 KOG0319 WD40-repeat-containing 100.0 3.8E-33 8.3E-38 233.1 20.9 229 51-283 352-594 (775)
36 KOG0281 Beta-TrCP (transducin 100.0 1.4E-34 3.1E-39 223.0 10.6 207 49-269 222-431 (499)
37 KOG0296 Angio-associated migra 100.0 1.4E-31 2.9E-36 207.3 26.3 210 52-266 94-398 (399)
38 cd00200 WD40 WD40 domain, foun 100.0 4.1E-31 9E-36 212.8 30.4 226 56-285 43-272 (289)
39 KOG0316 Conserved WD40 repeat- 100.0 2.6E-32 5.5E-37 200.1 20.3 224 47-276 42-267 (307)
40 KOG0276 Vesicle coat complex C 100.0 1.2E-32 2.6E-37 226.5 20.3 227 57-287 6-240 (794)
41 KOG0276 Vesicle coat complex C 100.0 1.5E-32 3.3E-37 225.9 20.4 217 54-274 45-265 (794)
42 KOG0319 WD40-repeat-containing 100.0 7.4E-33 1.6E-37 231.4 18.8 213 52-267 399-620 (775)
43 KOG0318 WD40 repeat stress pro 100.0 4.9E-31 1.1E-35 213.0 27.7 235 50-286 176-542 (603)
44 KOG0277 Peroxisomal targeting 100.0 8.1E-33 1.8E-37 204.7 15.0 213 50-265 90-308 (311)
45 KOG0640 mRNA cleavage stimulat 100.0 7.5E-32 1.6E-36 205.1 20.0 223 50-274 98-343 (430)
46 KOG0285 Pleiotropic regulator 100.0 8.8E-32 1.9E-36 208.1 19.7 218 51-274 180-397 (460)
47 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-30 7.4E-35 196.4 27.7 230 55-287 5-288 (311)
48 KOG0645 WD40 repeat protein [G 100.0 5.9E-31 1.3E-35 196.5 22.9 205 61-266 58-311 (312)
49 KOG0292 Vesicle coat complex C 100.0 1.7E-31 3.7E-36 227.5 22.2 219 54-274 41-288 (1202)
50 KOG0282 mRNA splicing factor [ 100.0 1.9E-32 4.1E-37 219.0 14.8 207 53-264 247-503 (503)
51 KOG0313 Microtubule binding pr 100.0 7.9E-31 1.7E-35 204.1 22.0 232 50-286 130-397 (423)
52 KOG0275 Conserved WD40 repeat- 100.0 4E-32 8.7E-37 207.9 14.4 211 61-274 210-430 (508)
53 KOG0283 WD40 repeat-containing 100.0 2.3E-31 5E-36 225.7 20.4 212 62-277 265-543 (712)
54 PLN00181 protein SPA1-RELATED; 100.0 9E-30 2E-34 232.1 32.4 203 64-271 532-743 (793)
55 KOG0310 Conserved WD40 repeat- 100.0 5.8E-31 1.3E-35 210.7 20.8 220 60-285 64-290 (487)
56 KOG0292 Vesicle coat complex C 100.0 2.8E-31 6E-36 226.1 19.7 222 59-284 4-260 (1202)
57 KOG1407 WD40 repeat protein [F 100.0 3.8E-30 8.2E-35 191.3 22.4 226 57-287 57-285 (313)
58 KOG0293 WD40 repeat-containing 100.0 9.1E-31 2E-35 205.9 19.7 234 49-285 209-493 (519)
59 KOG0289 mRNA splicing factor [ 100.0 2.5E-30 5.4E-35 204.5 21.9 215 50-267 247-463 (506)
60 KOG0318 WD40 repeat stress pro 100.0 1.8E-29 3.8E-34 204.1 26.2 217 55-274 50-273 (603)
61 PLN00181 protein SPA1-RELATED; 100.0 3.1E-29 6.7E-34 228.6 30.6 210 54-265 565-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 3E-32 6.5E-37 210.2 9.1 204 63-280 196-402 (499)
63 KOG0294 WD40 repeat-containing 100.0 3.4E-29 7.4E-34 190.8 24.1 212 50-268 29-283 (362)
64 KOG0274 Cdc4 and related F-box 100.0 1.1E-29 2.3E-34 217.0 24.0 216 50-276 234-451 (537)
65 PTZ00421 coronin; Provisional 100.0 1.2E-28 2.6E-33 210.1 29.6 200 66-269 22-248 (493)
66 KOG0283 WD40 repeat-containing 100.0 6.9E-30 1.5E-34 216.8 21.4 213 50-267 355-577 (712)
67 KOG0643 Translation initiation 100.0 3.9E-29 8.5E-34 186.5 22.8 213 52-266 40-317 (327)
68 KOG0275 Conserved WD40 repeat- 100.0 2.4E-30 5.2E-35 198.2 16.7 222 51-274 250-475 (508)
69 KOG0264 Nucleosome remodeling 100.0 8.9E-30 1.9E-34 202.3 19.3 214 53-266 166-404 (422)
70 PTZ00420 coronin; Provisional 100.0 4.2E-28 9E-33 208.0 29.5 188 83-274 50-257 (568)
71 KOG0313 Microtubule binding pr 100.0 3.4E-29 7.3E-34 195.0 19.8 206 54-266 183-418 (423)
72 KOG0289 mRNA splicing factor [ 100.0 6.2E-29 1.4E-33 196.6 21.0 216 65-284 220-442 (506)
73 KOG0646 WD40 repeat protein [G 100.0 7E-29 1.5E-33 197.9 21.4 215 63-282 80-327 (476)
74 KOG0647 mRNA export protein (c 100.0 1.2E-28 2.6E-33 186.8 21.1 224 61-285 24-304 (347)
75 KOG0264 Nucleosome remodeling 100.0 1.2E-28 2.7E-33 195.9 20.8 208 57-267 117-348 (422)
76 KOG0278 Serine/threonine kinas 100.0 1.6E-29 3.5E-34 187.0 13.9 231 48-286 43-279 (334)
77 KOG0310 Conserved WD40 repeat- 100.0 3E-28 6.4E-33 195.3 22.2 208 54-267 100-310 (487)
78 KOG0278 Serine/threonine kinas 100.0 7.2E-29 1.6E-33 183.6 16.3 213 51-271 88-302 (334)
79 KOG0973 Histone transcription 100.0 3.5E-28 7.6E-33 211.5 23.3 230 53-286 58-337 (942)
80 KOG0302 Ribosome Assembly prot 100.0 1.9E-28 4.1E-33 190.8 19.1 209 56-267 143-379 (440)
81 KOG0293 WD40 repeat-containing 100.0 1.1E-28 2.5E-33 194.1 17.8 210 54-267 259-514 (519)
82 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.4E-33 194.1 17.7 226 55-285 210-442 (459)
83 KOG0308 Conserved WD40 repeat- 100.0 3.8E-29 8.2E-34 206.8 15.1 212 69-283 29-260 (735)
84 KOG0305 Anaphase promoting com 100.0 9.8E-28 2.1E-32 198.5 23.3 220 59-285 212-442 (484)
85 KOG0267 Microtubule severing p 100.0 4.2E-30 9.1E-35 214.6 9.3 226 57-286 21-250 (825)
86 KOG1407 WD40 repeat protein [F 100.0 1.3E-27 2.9E-32 177.8 20.2 222 58-285 14-242 (313)
87 KOG0299 U3 snoRNP-associated p 100.0 2E-27 4.3E-32 189.4 22.1 205 61-268 199-412 (479)
88 KOG0306 WD40-repeat-containing 100.0 8.4E-28 1.8E-32 201.8 20.9 206 58-268 448-666 (888)
89 KOG0274 Cdc4 and related F-box 100.0 2.5E-27 5.4E-32 202.6 24.1 214 58-282 201-417 (537)
90 KOG0265 U5 snRNP-specific prot 100.0 1.8E-27 3.8E-32 180.3 19.6 210 51-264 119-336 (338)
91 KOG0269 WD40 repeat-containing 100.0 6.4E-29 1.4E-33 209.0 13.0 199 66-268 89-298 (839)
92 KOG1332 Vesicle coat complex C 100.0 1E-27 2.2E-32 176.8 17.7 216 52-267 44-287 (299)
93 KOG0640 mRNA cleavage stimulat 100.0 1.5E-27 3.3E-32 181.7 18.2 210 54-264 162-424 (430)
94 KOG4283 Transcription-coupled 100.0 2.1E-27 4.6E-32 179.7 18.6 213 57-270 36-280 (397)
95 KOG0305 Anaphase promoting com 100.0 3.3E-27 7.3E-32 195.4 21.3 209 53-268 248-463 (484)
96 KOG0268 Sof1-like rRNA process 100.0 3.1E-28 6.8E-33 188.7 13.0 227 54-285 56-326 (433)
97 KOG0300 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 180.1 18.6 229 52-286 178-452 (481)
98 KOG0267 Microtubule severing p 100.0 8.8E-29 1.9E-33 206.8 10.0 203 52-258 58-260 (825)
99 KOG0300 WD40 repeat-containing 100.0 1.3E-27 2.7E-32 182.9 14.8 211 55-269 139-389 (481)
100 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 193.2 15.4 203 61-266 265-487 (641)
101 KOG0641 WD40 repeat protein [G 100.0 4E-25 8.7E-30 161.8 26.9 229 54-285 23-284 (350)
102 KOG0306 WD40-repeat-containing 100.0 2E-26 4.3E-31 193.6 22.7 225 54-285 404-645 (888)
103 KOG1036 Mitotic spindle checkp 100.0 2.4E-26 5.3E-31 174.8 21.1 217 63-286 12-286 (323)
104 KOG1332 Vesicle coat complex C 100.0 1.7E-27 3.7E-32 175.6 14.2 227 58-288 5-266 (299)
105 KOG1446 Histone H3 (Lys4) meth 100.0 9.6E-26 2.1E-30 172.2 24.2 208 52-266 88-303 (311)
106 KOG0973 Histone transcription 100.0 1.5E-26 3.2E-31 201.5 22.4 224 62-286 11-277 (942)
107 KOG0269 WD40 repeat-containing 100.0 8.7E-28 1.9E-32 202.2 13.2 216 52-271 121-345 (839)
108 KOG0308 Conserved WD40 repeat- 100.0 3.8E-27 8.3E-32 195.0 16.6 210 56-269 65-288 (735)
109 KOG0641 WD40 repeat protein [G 100.0 2E-25 4.4E-30 163.3 23.4 206 57-267 82-304 (350)
110 KOG0299 U3 snoRNP-associated p 99.9 4.8E-26 1E-30 181.5 18.7 212 57-274 135-364 (479)
111 KOG0301 Phospholipase A2-activ 99.9 8.4E-26 1.8E-30 188.3 20.3 204 50-268 87-290 (745)
112 KOG1274 WD40 repeat protein [G 99.9 2.7E-25 5.9E-30 190.5 23.8 218 63-284 55-280 (933)
113 KOG2096 WD40 repeat protein [G 99.9 4E-25 8.6E-30 169.1 22.2 228 55-285 77-384 (420)
114 KOG0302 Ribosome Assembly prot 99.9 1.5E-25 3.3E-30 174.7 19.5 212 50-263 197-435 (440)
115 KOG0270 WD40 repeat-containing 99.9 3.7E-26 8.1E-31 181.4 15.8 212 61-273 240-456 (463)
116 KOG1273 WD40 repeat protein [G 99.9 2.4E-25 5.2E-30 170.1 18.0 221 52-276 13-290 (405)
117 KOG0301 Phospholipase A2-activ 99.9 2.9E-25 6.2E-30 185.1 19.7 219 55-286 48-267 (745)
118 KOG4328 WD40 protein [Function 99.9 1.1E-25 2.5E-30 179.3 16.4 212 55-266 177-399 (498)
119 KOG0288 WD40 repeat protein Ti 99.9 2.1E-26 4.6E-31 181.3 11.4 231 49-287 160-400 (459)
120 KOG4283 Transcription-coupled 99.9 4.3E-24 9.4E-29 161.9 21.5 226 59-286 96-347 (397)
121 KOG0303 Actin-binding protein 99.9 2.1E-24 4.5E-29 169.4 20.3 217 54-272 71-300 (472)
122 KOG0639 Transducin-like enhanc 99.9 3.3E-25 7.1E-30 178.9 16.2 219 62-287 417-642 (705)
123 KOG0270 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 173.2 17.9 200 68-270 177-408 (463)
124 KOG2055 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 167.6 23.9 218 64-285 213-446 (514)
125 KOG1539 WD repeat protein [Gen 99.9 5.8E-23 1.3E-27 174.7 28.7 233 52-285 190-628 (910)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-22 4E-27 164.5 29.9 221 56-283 65-299 (300)
127 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-24 4.6E-29 174.0 17.3 215 66-285 81-304 (673)
128 KOG2445 Nuclear pore complex c 99.9 4.8E-23 1E-27 157.0 23.5 207 59-267 8-257 (361)
129 KOG0268 Sof1-like rRNA process 99.9 5.8E-25 1.3E-29 170.7 13.4 217 50-272 95-351 (433)
130 KOG1539 WD repeat protein [Gen 99.9 7.5E-24 1.6E-28 180.0 20.3 198 64-267 448-649 (910)
131 KOG1408 WD40 repeat protein [F 99.9 4.4E-24 9.4E-29 179.0 17.6 225 61-286 456-691 (1080)
132 KOG2048 WD40 repeat protein [G 99.9 2.5E-22 5.4E-27 167.4 26.1 222 59-283 20-254 (691)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-21 3.5E-26 159.0 30.2 228 54-285 21-259 (300)
134 KOG1274 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 174.2 24.3 222 61-285 10-243 (933)
135 KOG0639 Transducin-like enhanc 99.9 4.5E-24 9.8E-29 172.4 14.1 205 64-274 465-671 (705)
136 KOG0646 WD40 repeat protein [G 99.9 2.9E-23 6.4E-28 166.0 17.3 190 52-246 111-329 (476)
137 KOG0647 mRNA export protein (c 99.9 1.5E-22 3.2E-27 153.9 19.8 192 58-254 66-311 (347)
138 KOG0642 Cell-cycle nuclear pro 99.9 3.4E-23 7.4E-28 169.3 17.0 216 54-274 284-569 (577)
139 KOG0294 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 153.6 19.3 147 80-228 4-164 (362)
140 KOG1036 Mitotic spindle checkp 99.9 3.1E-22 6.7E-27 152.6 19.7 191 57-256 47-294 (323)
141 KOG0307 Vesicle coat complex C 99.9 1.1E-23 2.3E-28 184.7 13.4 218 65-285 65-307 (1049)
142 KOG2055 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 161.2 19.3 225 57-285 250-493 (514)
143 KOG2445 Nuclear pore complex c 99.9 9.3E-22 2E-26 150.0 21.5 214 52-266 47-318 (361)
144 KOG0307 Vesicle coat complex C 99.9 1.3E-23 2.9E-28 184.2 11.9 216 51-269 103-330 (1049)
145 KOG2048 WD40 repeat protein [G 99.9 2.8E-21 6E-26 161.2 24.9 208 57-270 61-279 (691)
146 KOG0650 WD40 repeat nucleolar 99.9 2.2E-22 4.8E-27 165.7 17.5 212 47-264 383-678 (733)
147 KOG0321 WD40 repeat-containing 99.9 2.7E-22 5.8E-27 166.2 18.0 228 55-284 91-370 (720)
148 KOG2106 Uncharacterized conser 99.9 5.7E-21 1.2E-25 154.6 25.0 209 65-285 247-502 (626)
149 KOG4328 WD40 protein [Function 99.9 4.2E-22 9E-27 159.2 17.0 223 52-274 222-458 (498)
150 KOG1034 Transcriptional repres 99.9 4.6E-23 1E-27 158.3 10.8 214 52-267 123-384 (385)
151 KOG1408 WD40 repeat protein [F 99.9 4E-22 8.7E-27 167.4 17.1 209 56-267 493-714 (1080)
152 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.6E-26 150.4 18.2 220 64-284 104-350 (406)
153 KOG1063 RNA polymerase II elon 99.9 8E-21 1.7E-25 158.9 23.4 226 59-285 262-675 (764)
154 KOG2096 WD40 repeat protein [G 99.9 4E-21 8.7E-26 147.4 19.6 206 55-266 178-402 (420)
155 KOG1273 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 147.3 16.5 154 110-266 26-226 (405)
156 KOG1063 RNA polymerase II elon 99.9 5.9E-21 1.3E-25 159.6 18.8 212 54-266 515-763 (764)
157 KOG0322 G-protein beta subunit 99.9 7.1E-21 1.5E-25 142.4 16.0 208 52-265 2-322 (323)
158 KOG1007 WD repeat protein TSSC 99.9 8.3E-21 1.8E-25 143.8 16.2 205 57-266 56-289 (370)
159 KOG0321 WD40 repeat-containing 99.9 1.1E-20 2.5E-25 156.7 17.7 198 70-267 55-302 (720)
160 KOG1034 Transcriptional repres 99.9 4.3E-21 9.3E-26 147.6 13.9 223 63-287 88-366 (385)
161 KOG2106 Uncharacterized conser 99.9 4.8E-19 1E-23 143.6 25.9 217 60-286 196-459 (626)
162 KOG1009 Chromatin assembly com 99.9 1.6E-20 3.6E-25 148.1 17.1 217 52-271 53-377 (434)
163 KOG0649 WD40 repeat protein [G 99.9 5.8E-20 1.3E-24 136.1 18.9 212 66-284 12-256 (325)
164 KOG0771 Prolactin regulatory e 99.9 1.8E-20 3.9E-25 148.5 16.0 196 68-267 148-355 (398)
165 KOG1007 WD repeat protein TSSC 99.9 6.7E-20 1.4E-24 138.9 18.0 211 54-267 112-362 (370)
166 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-20 2.9E-25 152.2 15.1 215 67-285 37-261 (673)
167 KOG1188 WD40 repeat protein [G 99.9 3.2E-20 7E-25 143.5 16.5 197 78-274 41-250 (376)
168 KOG1009 Chromatin assembly com 99.9 6.7E-20 1.4E-24 144.7 18.4 193 63-255 12-249 (434)
169 KOG0303 Actin-binding protein 99.9 5.8E-20 1.2E-24 144.6 17.6 164 102-268 76-251 (472)
170 KOG1445 Tumor-specific antigen 99.9 1.4E-20 3.1E-25 156.3 13.8 205 64-270 627-848 (1012)
171 KOG1523 Actin-related protein 99.9 2E-19 4.3E-24 138.1 18.8 208 58-269 4-239 (361)
172 KOG2110 Uncharacterized conser 99.8 2.6E-18 5.7E-23 134.3 24.6 196 66-269 48-251 (391)
173 KOG0290 Conserved WD40 repeat- 99.8 1E-19 2.2E-24 138.0 16.0 203 61-268 93-320 (364)
174 KOG1538 Uncharacterized conser 99.8 4.9E-19 1.1E-23 148.2 21.3 211 52-269 41-296 (1081)
175 PRK01742 tolB translocation pr 99.8 4.6E-19 1E-23 151.1 21.8 217 57-287 196-424 (429)
176 KOG0644 Uncharacterized conser 99.8 3.5E-21 7.7E-26 164.1 7.7 210 57-274 183-434 (1113)
177 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-17 4E-22 140.6 30.0 216 56-275 100-323 (466)
178 KOG0290 Conserved WD40 repeat- 99.8 3.6E-19 7.8E-24 135.1 17.0 199 62-262 148-361 (364)
179 KOG1587 Cytoplasmic dynein int 99.8 4.5E-19 9.8E-24 151.2 18.9 209 55-267 234-517 (555)
180 KOG1310 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 148.8 13.9 219 55-274 41-311 (758)
181 COG2319 FOG: WD40 repeat [Gene 99.8 3E-17 6.6E-22 139.3 29.8 222 58-284 59-294 (466)
182 KOG0650 WD40 repeat nucleolar 99.8 2.2E-19 4.8E-24 148.2 15.0 205 57-263 514-732 (733)
183 KOG2919 Guanine nucleotide-bin 99.8 2.5E-18 5.5E-23 132.3 19.3 196 67-267 52-282 (406)
184 KOG0649 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 122.0 23.9 199 55-266 53-274 (325)
185 KOG2110 Uncharacterized conser 99.8 8.7E-17 1.9E-21 125.9 26.6 207 64-274 87-340 (391)
186 KOG1188 WD40 repeat protein [G 99.8 5.4E-19 1.2E-23 136.8 14.0 214 52-266 58-346 (376)
187 KOG1524 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 144.1 15.0 190 55-264 95-284 (737)
188 KOG2394 WD40 protein DMR-N9 [G 99.8 1.1E-18 2.4E-23 142.4 15.7 137 65-201 220-384 (636)
189 KOG2139 WD40 repeat protein [G 99.8 3.5E-17 7.6E-22 127.9 23.3 208 63-273 139-390 (445)
190 KOG1538 Uncharacterized conser 99.8 1.1E-18 2.4E-23 146.0 15.8 210 66-284 14-232 (1081)
191 KOG1272 WD40-repeat-containing 99.8 9.1E-20 2E-24 146.3 8.6 210 67-284 132-344 (545)
192 KOG3881 Uncharacterized conser 99.8 1.4E-17 3.1E-22 131.1 20.3 223 57-286 98-343 (412)
193 KOG1524 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 141.6 14.9 184 77-269 75-258 (737)
194 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-18 7.4E-23 140.3 16.6 178 51-230 331-570 (577)
195 PRK03629 tolB translocation pr 99.8 1.4E-16 3E-21 135.7 26.6 220 57-286 191-425 (429)
196 KOG1963 WD40 repeat protein [G 99.8 4.7E-17 1E-21 140.0 22.4 222 52-274 45-383 (792)
197 PF08662 eIF2A: Eukaryotic tra 99.8 8.1E-17 1.7E-21 121.9 21.1 155 111-274 9-186 (194)
198 KOG1445 Tumor-specific antigen 99.8 8.8E-18 1.9E-22 140.0 16.1 216 54-271 69-298 (1012)
199 PRK04922 tolB translocation pr 99.8 2.2E-16 4.8E-21 135.0 24.6 209 56-274 195-418 (433)
200 PRK05137 tolB translocation pr 99.8 5.8E-16 1.3E-20 132.6 26.7 209 54-271 191-417 (435)
201 PRK11028 6-phosphogluconolacto 99.8 8.1E-16 1.8E-20 127.3 26.8 202 66-270 81-310 (330)
202 KOG1240 Protein kinase contain 99.8 1.3E-16 2.7E-21 141.7 21.5 223 50-274 1034-1281(1431)
203 KOG4227 WD40 repeat protein [G 99.8 1E-16 2.2E-21 126.7 18.5 218 56-274 48-282 (609)
204 PRK02889 tolB translocation pr 99.8 4.1E-16 8.9E-21 132.9 23.7 207 58-274 189-410 (427)
205 KOG0771 Prolactin regulatory e 99.8 2.5E-17 5.3E-22 130.9 14.6 174 111-285 148-335 (398)
206 KOG2111 Uncharacterized conser 99.8 1.5E-15 3.4E-20 116.8 23.4 177 87-268 75-258 (346)
207 PF08662 eIF2A: Eukaryotic tra 99.8 7E-16 1.5E-20 116.8 20.8 156 68-229 9-186 (194)
208 PRK11028 6-phosphogluconolacto 99.7 4E-15 8.8E-20 123.1 26.8 209 56-268 27-260 (330)
209 KOG1523 Actin-related protein 99.7 1.5E-16 3.2E-21 122.5 16.1 201 52-257 43-269 (361)
210 KOG0322 G-protein beta subunit 99.7 3.2E-17 7E-22 123.0 12.2 157 64-220 150-322 (323)
211 KOG1272 WD40-repeat-containing 99.7 2.8E-18 6E-23 137.9 6.2 188 67-264 173-360 (545)
212 KOG1963 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 132.3 21.0 160 62-223 203-377 (792)
213 KOG3881 Uncharacterized conser 99.7 7.8E-16 1.7E-20 121.4 18.1 178 66-247 150-342 (412)
214 KOG1310 WD40 repeat protein [G 99.7 1.9E-17 4E-22 135.9 9.1 168 99-266 42-231 (758)
215 KOG2321 WD40 repeat protein [G 99.7 1.5E-15 3.2E-20 125.4 19.7 209 62-274 49-310 (703)
216 PRK01742 tolB translocation pr 99.7 1.5E-15 3.3E-20 129.6 20.8 190 86-285 183-382 (429)
217 KOG1517 Guanine nucleotide bin 99.7 8.6E-16 1.9E-20 134.8 18.9 221 65-287 1110-1364(1387)
218 PRK05137 tolB translocation pr 99.7 9.2E-15 2E-19 125.2 25.0 192 87-285 182-387 (435)
219 PRK01029 tolB translocation pr 99.7 2E-14 4.4E-19 122.2 26.5 223 59-286 179-426 (428)
220 TIGR02800 propeller_TolB tol-p 99.7 2.2E-14 4.7E-19 122.7 26.0 221 57-287 182-417 (417)
221 KOG0644 Uncharacterized conser 99.7 2.2E-17 4.8E-22 141.4 7.1 211 54-272 222-474 (1113)
222 KOG2139 WD40 repeat protein [G 99.7 7.1E-15 1.5E-19 115.1 20.3 203 60-266 192-431 (445)
223 KOG1517 Guanine nucleotide bin 99.7 1E-15 2.2E-20 134.4 16.7 199 68-269 1169-1384(1387)
224 KOG2394 WD40 protein DMR-N9 [G 99.7 2.3E-15 4.9E-20 123.4 16.9 193 87-284 144-384 (636)
225 PRK00178 tolB translocation pr 99.7 6E-14 1.3E-18 120.2 26.3 204 57-269 191-409 (430)
226 PRK02889 tolB translocation pr 99.7 1.7E-14 3.6E-19 123.1 22.6 192 87-285 176-381 (427)
227 KOG1587 Cytoplasmic dynein int 99.7 6.2E-15 1.3E-19 126.1 19.5 177 87-267 222-473 (555)
228 PRK03629 tolB translocation pr 99.7 6.1E-14 1.3E-18 119.6 25.7 191 88-285 180-384 (429)
229 KOG4227 WD40 repeat protein [G 99.7 3E-15 6.6E-20 118.5 15.3 167 102-269 51-228 (609)
230 PRK04922 tolB translocation pr 99.7 2E-14 4.4E-19 123.0 21.8 192 87-285 184-389 (433)
231 KOG2111 Uncharacterized conser 99.7 1.9E-13 4.1E-18 105.5 23.9 198 64-265 94-321 (346)
232 PF02239 Cytochrom_D1: Cytochr 99.6 4.3E-13 9.3E-18 111.5 26.4 191 79-274 8-210 (369)
233 PF02239 Cytochrom_D1: Cytochr 99.6 6.5E-13 1.4E-17 110.4 27.1 217 54-275 26-356 (369)
234 PRK04792 tolB translocation pr 99.6 2.6E-13 5.6E-18 116.3 25.1 207 58-274 211-432 (448)
235 KOG4547 WD40 repeat-containing 99.6 1.1E-13 2.4E-18 114.8 21.6 187 76-267 4-221 (541)
236 KOG2321 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 119.4 16.3 194 68-267 137-344 (703)
237 KOG4497 Uncharacterized conser 99.6 1.8E-13 4E-18 106.2 20.7 210 59-274 86-399 (447)
238 KOG0974 WD-repeat protein WDR6 99.6 3E-14 6.5E-19 125.0 17.4 188 76-268 98-290 (967)
239 TIGR02800 propeller_TolB tol-p 99.6 5.2E-13 1.1E-17 114.2 24.7 192 87-285 170-375 (417)
240 PF10282 Lactonase: Lactonase, 99.6 1.9E-11 4E-16 101.6 32.5 217 64-282 86-345 (345)
241 KOG0280 Uncharacterized conser 99.6 3.7E-13 8.1E-18 102.9 19.3 219 64-286 69-309 (339)
242 KOG1334 WD40 repeat protein [G 99.6 4.8E-15 1E-19 120.2 9.7 213 55-271 133-471 (559)
243 KOG4497 Uncharacterized conser 99.6 6.7E-14 1.5E-18 108.6 14.9 196 69-272 13-246 (447)
244 PRK00178 tolB translocation pr 99.6 3.1E-12 6.7E-17 109.7 25.3 191 88-285 180-384 (430)
245 KOG1240 Protein kinase contain 99.6 3.6E-13 7.9E-18 120.3 18.3 177 97-274 1038-1233(1431)
246 PRK04792 tolB translocation pr 99.5 9.8E-12 2.1E-16 106.6 24.1 178 88-272 199-388 (448)
247 KOG1064 RAVE (regulator of V-A 99.5 8.2E-14 1.8E-18 128.4 11.8 195 61-274 2205-2406(2439)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.9E-10 4.2E-15 93.9 30.1 198 72-274 53-338 (352)
249 PF10282 Lactonase: Lactonase, 99.5 3.1E-10 6.7E-15 94.3 30.3 220 65-285 37-302 (345)
250 KOG4190 Uncharacterized conser 99.5 7.1E-14 1.5E-18 115.6 8.0 177 52-231 723-916 (1034)
251 KOG4547 WD40 repeat-containing 99.5 4.5E-12 9.7E-17 105.4 18.5 161 117-282 3-188 (541)
252 KOG0974 WD-repeat protein WDR6 99.5 7.9E-13 1.7E-17 116.3 14.4 147 72-222 141-289 (967)
253 KOG1409 Uncharacterized conser 99.5 3.4E-12 7.3E-17 99.7 15.2 214 52-269 12-273 (404)
254 PRK04043 tolB translocation pr 99.5 3.1E-10 6.8E-15 96.2 27.8 197 66-272 189-406 (419)
255 KOG4532 WD40-like repeat conta 99.4 6.9E-11 1.5E-15 89.7 19.9 208 68-275 71-291 (344)
256 KOG0280 Uncharacterized conser 99.4 6.4E-11 1.4E-15 90.9 19.8 187 85-272 44-248 (339)
257 KOG2315 Predicted translation 99.4 2.1E-10 4.6E-15 95.2 23.3 200 63-272 164-395 (566)
258 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.2E-09 4.8E-14 87.7 28.9 196 87-285 27-309 (352)
259 PLN02919 haloacid dehalogenase 99.4 5.8E-10 1.3E-14 104.4 28.8 203 67-271 626-893 (1057)
260 PRK01029 tolB translocation pr 99.4 1E-10 2.2E-15 99.6 21.7 180 64-248 230-426 (428)
261 KOG1409 Uncharacterized conser 99.4 4.3E-11 9.2E-16 93.7 17.2 158 64-222 68-271 (404)
262 KOG2066 Vacuolar assembly/sort 99.4 1.9E-11 4.1E-16 105.3 16.5 186 64-267 39-234 (846)
263 KOG4714 Nucleoporin [Nuclear s 99.4 4.7E-12 1E-16 95.4 11.2 169 52-222 77-255 (319)
264 PF08450 SGL: SMP-30/Gluconola 99.4 5.8E-09 1.3E-13 82.7 29.6 207 69-283 4-233 (246)
265 KOG1354 Serine/threonine prote 99.4 2.3E-11 5.1E-16 95.2 15.2 208 64-274 25-310 (433)
266 KOG1354 Serine/threonine prote 99.4 7.2E-12 1.6E-16 98.0 11.9 203 65-269 85-362 (433)
267 COG2706 3-carboxymuconate cycl 99.4 3.4E-09 7.3E-14 83.9 26.6 214 68-282 92-344 (346)
268 KOG0309 Conserved WD40 repeat- 99.4 7.6E-12 1.7E-16 106.8 11.1 211 54-267 104-340 (1081)
269 KOG1334 WD40 repeat protein [G 99.3 4.8E-12 1E-16 103.0 9.0 186 99-284 134-346 (559)
270 KOG2315 Predicted translation 99.3 2.4E-10 5.2E-15 94.8 18.1 167 69-246 222-410 (566)
271 PRK04043 tolB translocation pr 99.3 4.4E-09 9.4E-14 89.3 26.0 188 88-285 170-378 (419)
272 PF07433 DUF1513: Protein of u 99.3 1.1E-08 2.4E-13 81.0 26.1 207 66-274 6-255 (305)
273 KOG2041 WD40 repeat protein [G 99.3 3.5E-10 7.7E-15 96.7 18.7 205 64-274 14-304 (1189)
274 KOG3914 WD repeat protein WDR4 99.3 4.4E-11 9.6E-16 95.3 12.6 160 110-274 65-231 (390)
275 COG4946 Uncharacterized protei 99.3 2.3E-09 5E-14 87.7 21.9 176 72-255 327-507 (668)
276 KOG3914 WD repeat protein WDR4 99.3 7.6E-11 1.7E-15 94.0 12.4 160 66-229 64-231 (390)
277 KOG2695 WD40 repeat protein [G 99.3 1.9E-11 4.1E-16 95.7 8.7 148 123-274 228-384 (425)
278 KOG1275 PAB-dependent poly(A) 99.3 2.5E-10 5.4E-15 99.9 16.1 182 77-264 147-340 (1118)
279 PLN02919 haloacid dehalogenase 99.3 2.1E-08 4.6E-13 94.1 29.8 203 68-273 571-840 (1057)
280 COG4946 Uncharacterized protei 99.3 7E-09 1.5E-13 85.0 23.1 184 84-274 284-485 (668)
281 KOG4714 Nucleoporin [Nuclear s 99.3 3.8E-11 8.1E-16 90.6 8.9 197 67-267 39-255 (319)
282 COG2706 3-carboxymuconate cycl 99.3 9.5E-09 2E-13 81.4 22.6 181 86-268 15-223 (346)
283 KOG4190 Uncharacterized conser 99.3 2.5E-11 5.5E-16 100.8 8.5 173 100-274 728-914 (1034)
284 PF13360 PQQ_2: PQQ-like domai 99.2 1.2E-08 2.6E-13 80.4 23.1 187 78-273 37-237 (238)
285 PF15492 Nbas_N: Neuroblastoma 99.2 2.9E-08 6.2E-13 76.5 23.8 202 70-274 3-267 (282)
286 KOG1912 WD40 repeat protein [G 99.2 2.1E-09 4.6E-14 92.7 19.0 213 52-267 43-305 (1062)
287 PF04762 IKI3: IKI3 family; I 99.2 5.3E-09 1.2E-13 96.4 23.0 202 63-269 74-336 (928)
288 KOG1832 HIV-1 Vpr-binding prot 99.2 6.2E-12 1.3E-16 109.5 3.8 204 52-274 1089-1299(1516)
289 KOG2695 WD40 repeat protein [G 99.2 6.5E-11 1.4E-15 92.8 8.5 172 70-245 217-401 (425)
290 PF04762 IKI3: IKI3 family; I 99.2 6.8E-09 1.5E-13 95.7 22.6 198 61-265 117-378 (928)
291 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.9E-15 107.9 10.3 164 106-274 2207-2374(2439)
292 KOG0882 Cyclophilin-related pe 99.2 2.9E-10 6.3E-15 92.1 10.4 209 62-274 7-239 (558)
293 TIGR03300 assembly_YfgL outer 99.2 2.2E-08 4.7E-13 84.6 22.2 194 77-274 65-267 (377)
294 KOG4532 WD40-like repeat conta 99.1 2.6E-08 5.7E-13 75.9 19.0 192 79-271 130-336 (344)
295 KOG2314 Translation initiation 99.1 2.2E-08 4.8E-13 83.5 19.0 198 66-267 251-526 (698)
296 TIGR03300 assembly_YfgL outer 99.1 3.7E-08 8E-13 83.2 21.1 187 79-275 147-347 (377)
297 PF08450 SGL: SMP-30/Gluconola 99.1 1E-06 2.2E-11 69.9 27.3 180 67-254 42-243 (246)
298 COG5170 CDC55 Serine/threonine 99.1 4.4E-09 9.6E-14 81.7 12.8 208 64-274 26-318 (460)
299 KOG1912 WD40 repeat protein [G 99.1 1.4E-08 3E-13 87.9 17.0 206 66-274 17-268 (1062)
300 COG5354 Uncharacterized protei 99.1 1.5E-07 3.3E-12 77.8 22.2 198 65-271 174-400 (561)
301 PF13360 PQQ_2: PQQ-like domai 99.1 7.1E-08 1.5E-12 76.0 20.2 183 86-272 2-197 (238)
302 KOG2041 WD40 repeat protein [G 99.1 1.7E-08 3.7E-13 86.7 17.1 192 55-252 62-324 (1189)
303 KOG0882 Cyclophilin-related pe 99.1 4.6E-09 1E-13 85.3 12.6 221 55-280 44-319 (558)
304 KOG2114 Vacuolar assembly/sort 99.0 2.2E-07 4.8E-12 81.5 21.2 201 66-274 27-251 (933)
305 KOG0309 Conserved WD40 repeat- 99.0 5.1E-09 1.1E-13 90.0 11.0 179 66-248 69-257 (1081)
306 COG5354 Uncharacterized protei 99.0 1.8E-07 3.9E-12 77.4 19.4 198 65-268 72-308 (561)
307 PF15492 Nbas_N: Neuroblastoma 99.0 4.3E-07 9.3E-12 70.2 20.2 164 66-231 45-269 (282)
308 KOG2066 Vacuolar assembly/sort 99.0 1.2E-07 2.5E-12 82.6 18.2 158 57-221 51-233 (846)
309 KOG1275 PAB-dependent poly(A) 98.9 2.4E-08 5.1E-13 87.9 13.8 149 66-220 179-341 (1118)
310 PF00400 WD40: WD domain, G-be 98.9 5.7E-09 1.2E-13 57.1 6.5 39 181-219 1-39 (39)
311 PF07433 DUF1513: Protein of u 98.9 2E-06 4.4E-11 68.4 23.0 194 55-264 47-283 (305)
312 PF00400 WD40: WD domain, G-be 98.9 4.6E-09 1E-13 57.4 6.0 38 98-135 2-39 (39)
313 PF08553 VID27: VID27 cytoplas 98.9 3.1E-07 6.8E-12 82.2 20.5 140 120-265 494-646 (794)
314 PF06977 SdiA-regulated: SdiA- 98.9 4.4E-06 9.6E-11 65.4 24.5 203 58-263 15-247 (248)
315 KOG2314 Translation initiation 98.9 1.8E-07 3.9E-12 78.3 17.1 179 89-274 192-389 (698)
316 COG5170 CDC55 Serine/threonine 98.9 1.6E-08 3.4E-13 78.7 10.2 199 66-266 87-367 (460)
317 KOG1645 RING-finger-containing 98.9 1.2E-07 2.5E-12 76.3 15.0 84 55-139 184-268 (463)
318 KOG1920 IkappaB kinase complex 98.9 7E-07 1.5E-11 81.2 21.1 199 65-267 69-323 (1265)
319 COG0823 TolB Periplasmic compo 98.9 6.5E-07 1.4E-11 75.8 19.8 223 57-286 185-421 (425)
320 PF08596 Lgl_C: Lethal giant l 98.9 5.3E-06 1.1E-10 69.7 25.0 204 66-274 3-298 (395)
321 KOG1008 Uncharacterized conser 98.8 7.8E-10 1.7E-14 93.5 1.1 199 65-266 57-275 (783)
322 PF08553 VID27: VID27 cytoplas 98.8 7E-07 1.5E-11 80.0 19.3 141 78-220 494-646 (794)
323 PRK11138 outer membrane biogen 98.8 1.6E-06 3.5E-11 73.7 20.0 193 78-274 70-282 (394)
324 COG3391 Uncharacterized conser 98.8 1.9E-05 4.1E-10 66.7 26.2 204 67-274 76-291 (381)
325 KOG3617 WD40 and TPR repeat-co 98.8 4.1E-07 8.9E-12 79.9 15.6 109 68-179 19-131 (1416)
326 PRK11138 outer membrane biogen 98.8 1.8E-06 3.9E-11 73.4 19.3 185 79-273 122-319 (394)
327 KOG1832 HIV-1 Vpr-binding prot 98.8 6E-09 1.3E-13 91.4 3.9 167 99-274 1093-1263(1516)
328 KOG3617 WD40 and TPR repeat-co 98.7 5.6E-07 1.2E-11 79.1 15.2 187 67-255 62-374 (1416)
329 KOG4649 PQQ (pyrrolo-quinoline 98.7 2E-05 4.3E-10 60.5 21.5 150 72-223 18-167 (354)
330 PF11768 DUF3312: Protein of u 98.7 1.4E-06 3E-11 73.9 16.0 112 110-223 208-331 (545)
331 PF11768 DUF3312: Protein of u 98.6 6.8E-06 1.5E-10 69.8 18.3 114 152-270 208-333 (545)
332 cd00216 PQQ_DH Dehydrogenases 98.6 3.3E-05 7.1E-10 67.5 23.1 194 79-274 63-327 (488)
333 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.8E-10 73.4 19.8 158 63-223 108-324 (1265)
334 COG3391 Uncharacterized conser 98.6 0.0002 4.4E-09 60.5 25.1 207 66-274 32-247 (381)
335 KOG1645 RING-finger-containing 98.5 5.2E-07 1.1E-11 72.7 8.9 93 131-224 175-269 (463)
336 COG0823 TolB Periplasmic compo 98.5 8.4E-06 1.8E-10 69.2 16.7 167 97-269 182-361 (425)
337 PRK02888 nitrous-oxide reducta 98.5 1.8E-05 3.9E-10 68.9 18.6 174 82-267 210-405 (635)
338 PF06977 SdiA-regulated: SdiA- 98.5 0.00012 2.5E-09 57.5 21.3 182 102-285 16-232 (248)
339 cd00216 PQQ_DH Dehydrogenases 98.5 6.5E-05 1.4E-09 65.7 22.1 183 85-274 173-432 (488)
340 KOG3621 WD40 repeat-containing 98.5 2.7E-06 5.9E-11 73.4 13.0 125 76-200 44-179 (726)
341 KOG1008 Uncharacterized conser 98.5 7.4E-08 1.6E-12 81.9 3.2 162 57-221 95-275 (783)
342 PF06433 Me-amine-dh_H: Methyl 98.4 0.00048 1E-08 55.8 24.4 197 70-274 100-328 (342)
343 KOG2114 Vacuolar assembly/sort 98.4 5E-05 1.1E-09 67.3 18.9 175 55-230 55-252 (933)
344 PF08596 Lgl_C: Lethal giant l 98.4 0.00012 2.5E-09 61.7 20.4 209 54-265 76-334 (395)
345 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00028 6.1E-09 60.1 22.9 175 88-274 62-254 (410)
346 KOG4649 PQQ (pyrrolo-quinoline 98.4 8E-05 1.7E-09 57.2 17.1 144 119-267 23-166 (354)
347 PF04053 Coatomer_WDAD: Coatom 98.4 0.00011 2.3E-09 62.8 19.7 152 54-221 22-173 (443)
348 PF04053 Coatomer_WDAD: Coatom 98.4 7.9E-05 1.7E-09 63.6 18.8 145 106-268 31-175 (443)
349 PF03178 CPSF_A: CPSF A subuni 98.4 5.3E-05 1.1E-09 62.6 17.5 174 87-266 2-202 (321)
350 COG3386 Gluconolactonase [Carb 98.4 0.00056 1.2E-08 55.6 22.4 206 69-282 29-262 (307)
351 KOG3621 WD40 repeat-containing 98.4 7.5E-06 1.6E-10 70.7 12.0 117 150-267 34-155 (726)
352 KOG4640 Anaphase-promoting com 98.4 3E-06 6.5E-11 72.3 9.4 94 64-159 20-115 (665)
353 COG3490 Uncharacterized protei 98.3 0.0003 6.5E-09 55.0 18.1 209 66-274 69-318 (366)
354 KOG2395 Protein involved in va 98.3 2.6E-05 5.6E-10 65.6 13.3 142 118-266 344-500 (644)
355 PRK02888 nitrous-oxide reducta 98.3 0.00012 2.5E-09 64.0 17.7 103 116-222 285-405 (635)
356 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00017 3.7E-09 60.4 18.3 184 86-271 22-273 (353)
357 KOG4640 Anaphase-promoting com 98.3 7.6E-06 1.7E-10 69.9 9.7 94 150-246 21-115 (665)
358 PF03178 CPSF_A: CPSF A subuni 98.3 0.00082 1.8E-08 55.6 21.7 181 77-263 42-262 (321)
359 PHA02713 hypothetical protein; 98.2 0.0002 4.3E-09 63.6 17.0 187 76-271 303-538 (557)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0028 6.1E-08 55.9 23.6 185 86-274 180-498 (527)
361 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00076 1.6E-08 45.3 15.1 101 67-174 2-109 (111)
362 PRK13616 lipoprotein LpqB; Pro 98.1 0.00025 5.5E-09 62.9 16.8 168 86-264 328-523 (591)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0033 7.2E-08 55.5 23.4 192 78-272 70-339 (527)
364 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.001 2.2E-08 55.8 19.2 217 64-286 42-339 (353)
365 COG3204 Uncharacterized protei 98.1 0.0017 3.7E-08 51.2 18.3 169 104-273 82-269 (316)
366 PRK13616 lipoprotein LpqB; Pro 98.1 0.00099 2.1E-08 59.3 19.3 187 65-262 350-564 (591)
367 PF14870 PSII_BNR: Photosynthe 98.0 0.0045 9.7E-08 50.2 22.8 159 101-263 138-301 (302)
368 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0074 1.6E-07 51.6 24.6 173 65-248 81-271 (410)
369 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0016 3.4E-08 43.8 15.3 101 152-262 2-110 (111)
370 KOG2395 Protein involved in va 98.0 0.00037 8.1E-09 58.9 14.1 139 79-220 348-499 (644)
371 smart00320 WD40 WD40 repeats. 98.0 2.5E-05 5.4E-10 41.5 5.1 38 55-93 3-40 (40)
372 TIGR03074 PQQ_membr_DH membran 98.0 0.014 3E-07 53.6 25.2 195 78-274 195-485 (764)
373 PF00780 CNH: CNH domain; Int 98.0 0.0059 1.3E-07 49.2 23.4 141 76-225 6-169 (275)
374 PF05096 Glu_cyclase_2: Glutam 97.9 0.0058 1.3E-07 48.0 20.1 171 98-274 34-211 (264)
375 smart00320 WD40 WD40 repeats. 97.9 4.9E-05 1.1E-09 40.2 5.8 38 182-219 3-40 (40)
376 KOG2079 Vacuolar assembly/sort 97.9 5.9E-05 1.3E-09 68.5 8.4 104 160-265 98-202 (1206)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0087 1.9E-07 50.6 20.6 82 191-274 307-406 (415)
378 PHA03098 kelch-like protein; P 97.8 0.002 4.3E-08 57.3 17.4 186 76-270 294-515 (534)
379 KOG2444 WD40 repeat protein [G 97.8 3.5E-05 7.6E-10 58.0 5.1 139 122-266 33-177 (238)
380 PF06433 Me-amine-dh_H: Methyl 97.8 0.013 2.9E-07 47.7 23.0 202 69-274 40-285 (342)
381 KOG2079 Vacuolar assembly/sort 97.7 0.00018 4E-09 65.4 8.7 97 118-214 98-198 (1206)
382 COG5167 VID27 Protein involved 97.7 0.002 4.4E-08 54.5 14.0 143 117-266 477-632 (776)
383 PF10647 Gmad1: Lipoprotein Lp 97.7 0.013 2.8E-07 46.6 18.2 147 109-258 25-187 (253)
384 KOG4441 Proteins containing BT 97.7 0.0054 1.2E-07 54.6 17.4 192 68-270 326-550 (571)
385 PF00780 CNH: CNH domain; Int 97.7 0.021 4.5E-07 46.0 24.1 191 66-274 37-263 (275)
386 COG3386 Gluconolactonase [Carb 97.7 0.023 4.9E-07 46.4 22.3 170 78-254 78-273 (307)
387 PF14583 Pectate_lyase22: Olig 97.6 0.026 5.6E-07 46.9 19.8 219 52-272 18-278 (386)
388 PF02897 Peptidase_S9_N: Proly 97.6 0.033 7.1E-07 47.9 28.3 197 67-272 126-363 (414)
389 PHA02790 Kelch-like protein; P 97.6 0.012 2.6E-07 51.5 18.1 182 76-269 271-473 (480)
390 KOG3630 Nuclear pore complex, 97.6 0.0017 3.7E-08 59.8 12.8 145 108-254 101-261 (1405)
391 PF05096 Glu_cyclase_2: Glutam 97.6 0.023 5.1E-07 44.7 24.3 182 67-254 47-249 (264)
392 KOG4441 Proteins containing BT 97.5 0.0092 2E-07 53.2 16.7 189 76-272 284-505 (571)
393 COG3490 Uncharacterized protei 97.5 0.035 7.7E-07 43.8 18.0 148 108-255 68-244 (366)
394 PF14583 Pectate_lyase22: Olig 97.4 0.04 8.7E-07 45.8 17.9 158 93-254 16-206 (386)
395 KOG4499 Ca2+-binding protein R 97.4 0.032 6.9E-07 42.8 17.6 204 76-283 26-262 (310)
396 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00059 1.3E-08 38.3 5.0 36 235-271 10-45 (47)
397 KOG2444 WD40 repeat protein [G 97.4 0.00058 1.3E-08 51.6 6.3 136 83-221 36-177 (238)
398 PRK13684 Ycf48-like protein; P 97.4 0.057 1.2E-06 44.9 21.1 152 107-264 172-329 (334)
399 PF15390 DUF4613: Domain of un 97.4 0.0087 1.9E-07 51.7 13.8 149 64-221 19-186 (671)
400 COG5167 VID27 Protein involved 97.4 0.0068 1.5E-07 51.5 12.5 137 81-221 484-632 (776)
401 PHA02713 hypothetical protein; 97.3 0.032 6.9E-07 49.8 17.6 171 88-267 273-489 (557)
402 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0012 2.7E-08 37.0 5.6 34 64-99 11-44 (47)
403 PF05694 SBP56: 56kDa selenium 97.3 0.082 1.8E-06 44.6 20.8 216 54-269 52-345 (461)
404 PF12234 Rav1p_C: RAVE protein 97.3 0.018 3.8E-07 51.3 15.2 113 151-265 31-155 (631)
405 COG3204 Uncharacterized protei 97.3 0.06 1.3E-06 42.8 19.8 198 62-262 83-308 (316)
406 PF15390 DUF4613: Domain of un 97.3 0.025 5.4E-07 49.1 15.4 149 107-267 19-187 (671)
407 TIGR03074 PQQ_membr_DH membran 97.3 0.09 1.9E-06 48.5 19.8 157 119-276 194-432 (764)
408 KOG4499 Ca2+-binding protein R 97.1 0.076 1.7E-06 40.8 17.7 143 107-254 108-272 (310)
409 TIGR03118 PEPCTERM_chp_1 conse 97.1 0.099 2.1E-06 41.9 22.6 205 66-274 24-287 (336)
410 PRK13684 Ycf48-like protein; P 97.0 0.14 3E-06 42.7 17.3 151 64-220 172-330 (334)
411 TIGR02604 Piru_Ver_Nterm putat 97.0 0.12 2.7E-06 43.5 17.2 139 110-255 16-202 (367)
412 PF05694 SBP56: 56kDa selenium 97.0 0.18 3.8E-06 42.7 21.6 183 72-255 137-392 (461)
413 KOG1897 Damage-specific DNA bi 96.9 0.25 5.4E-06 45.7 18.6 173 89-267 752-943 (1096)
414 COG1520 FOG: WD40-like repeat 96.9 0.22 4.9E-06 42.1 20.3 193 79-274 70-276 (370)
415 PF02897 Peptidase_S9_N: Proly 96.8 0.3 6.4E-06 42.0 25.0 201 70-273 175-411 (414)
416 PF14870 PSII_BNR: Photosynthe 96.7 0.24 5.1E-06 40.4 24.8 199 67-274 64-268 (302)
417 KOG1897 Damage-specific DNA bi 96.7 0.5 1.1E-05 43.9 20.2 150 67-220 777-941 (1096)
418 PF10647 Gmad1: Lipoprotein Lp 96.7 0.24 5.2E-06 39.4 19.9 147 66-213 25-187 (253)
419 TIGR02604 Piru_Ver_Nterm putat 96.6 0.22 4.8E-06 42.1 16.0 142 65-210 14-202 (367)
420 PHA03098 kelch-like protein; P 96.6 0.14 3E-06 45.7 15.4 144 76-224 342-514 (534)
421 PLN02193 nitrile-specifier pro 96.6 0.44 9.6E-06 41.7 20.4 149 118-271 228-415 (470)
422 PF10168 Nup88: Nuclear pore c 96.6 0.16 3.5E-06 46.5 15.6 72 108-179 85-179 (717)
423 PLN00033 photosystem II stabil 96.6 0.4 8.7E-06 40.8 18.9 149 110-263 241-396 (398)
424 PLN02153 epithiospecifier prot 96.5 0.37 8.1E-06 40.2 20.6 188 76-269 32-287 (341)
425 PF08728 CRT10: CRT10; InterP 96.5 0.36 7.7E-06 43.8 16.7 112 152-265 103-245 (717)
426 PF14761 HPS3_N: Hermansky-Pud 96.5 0.25 5.4E-06 37.6 13.5 106 162-270 29-167 (215)
427 PF12234 Rav1p_C: RAVE protein 96.5 0.27 5.9E-06 44.0 15.7 109 110-220 32-155 (631)
428 KOG2247 WD40 repeat-containing 96.5 0.00033 7.1E-09 58.7 -2.0 137 67-206 37-174 (615)
429 PF05935 Arylsulfotrans: Aryls 96.5 0.34 7.4E-06 42.5 16.4 150 121-275 117-310 (477)
430 KOG1916 Nuclear protein, conta 96.5 0.00037 8.1E-09 62.5 -1.8 165 59-226 127-328 (1283)
431 KOG3630 Nuclear pore complex, 96.4 0.035 7.6E-07 51.7 10.2 141 65-208 101-260 (1405)
432 COG1520 FOG: WD40-like repeat 96.4 0.38 8.1E-06 40.7 15.8 151 121-274 70-225 (370)
433 COG3823 Glutamine cyclotransfe 96.2 0.36 7.7E-06 36.6 14.8 175 76-254 55-247 (262)
434 PF10168 Nup88: Nuclear pore c 96.2 1 2.2E-05 41.5 18.9 73 65-139 85-181 (717)
435 PHA02790 Kelch-like protein; P 96.2 0.27 5.9E-06 43.2 14.3 141 76-223 318-472 (480)
436 COG4257 Vgb Streptogramin lyas 96.1 0.54 1.2E-05 37.2 17.7 198 65-268 62-264 (353)
437 KOG2247 WD40 repeat-containing 96.0 0.00079 1.7E-08 56.5 -1.8 141 111-257 38-179 (615)
438 COG5276 Uncharacterized conser 96.0 0.6 1.3E-05 37.4 20.2 155 107-270 86-245 (370)
439 PF08728 CRT10: CRT10; InterP 96.0 0.71 1.5E-05 42.0 16.0 152 63-220 39-245 (717)
440 PRK10115 protease 2; Provision 96.0 1.2 2.7E-05 41.0 27.0 198 66-270 128-350 (686)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.4 8.6E-06 40.9 13.6 96 50-148 293-409 (415)
442 PF10313 DUF2415: Uncharacteri 95.9 0.061 1.3E-06 29.3 5.6 31 192-222 1-34 (43)
443 KOG2280 Vacuolar assembly/sort 95.9 0.68 1.5E-05 41.8 14.9 179 87-274 64-254 (829)
444 KOG1983 Tomosyn and related SN 95.8 0.42 9.1E-06 45.7 14.5 30 245-274 243-272 (993)
445 COG3823 Glutamine cyclotransfe 95.8 0.5 1.1E-05 35.8 11.9 153 118-274 55-212 (262)
446 PF10313 DUF2415: Uncharacteri 95.6 0.097 2.1E-06 28.5 5.7 32 65-96 1-34 (43)
447 PF07569 Hira: TUP1-like enhan 95.5 0.16 3.4E-06 39.5 8.9 70 199-269 18-98 (219)
448 PF07250 Glyoxal_oxid_N: Glyox 95.5 0.77 1.7E-05 36.1 12.6 141 131-274 48-205 (243)
449 PLN00033 photosystem II stabil 95.4 1.5 3.3E-05 37.4 18.3 145 67-218 241-396 (398)
450 PF13449 Phytase-like: Esteras 95.3 1.4 3E-05 36.6 17.7 146 107-253 19-231 (326)
451 KOG4460 Nuclear pore complex, 95.3 1.6 3.4E-05 38.0 14.5 74 109-182 105-201 (741)
452 PF05935 Arylsulfotrans: Aryls 95.2 2 4.3E-05 37.8 18.7 143 85-232 126-312 (477)
453 PF14781 BBS2_N: Ciliary BBSom 95.1 0.74 1.6E-05 32.3 12.7 112 154-272 3-131 (136)
454 KOG1900 Nuclear pore complex, 95.1 2 4.4E-05 41.4 15.9 152 68-222 82-273 (1311)
455 PF14781 BBS2_N: Ciliary BBSom 95.0 0.78 1.7E-05 32.2 13.6 115 112-229 3-133 (136)
456 PF14727 PHTB1_N: PTHB1 N-term 95.0 2 4.4E-05 36.8 17.4 151 67-219 27-202 (418)
457 KOG2377 Uncharacterized conser 94.9 1.4 3E-05 37.7 12.9 120 148-272 65-191 (657)
458 TIGR03548 mutarot_permut cycli 94.8 1.9 4.2E-05 35.7 19.2 104 118-224 72-197 (323)
459 KOG2280 Vacuolar assembly/sort 94.8 2.9 6.3E-05 38.0 15.4 161 64-230 83-255 (829)
460 PF14779 BBS1: Ciliary BBSome 94.8 1.6 3.5E-05 34.5 17.7 70 191-263 176-255 (257)
461 PF07569 Hira: TUP1-like enhan 94.8 0.36 7.8E-06 37.4 9.0 66 157-223 18-97 (219)
462 KOG1898 Splicing factor 3b, su 94.7 3.9 8.6E-05 38.7 17.9 133 128-266 911-1048(1205)
463 PF11715 Nup160: Nucleoporin N 94.7 0.41 8.9E-06 42.9 10.5 74 201-274 156-256 (547)
464 PF03022 MRJP: Major royal jel 94.7 1.9 4.2E-05 35.0 20.3 168 88-255 35-254 (287)
465 KOG1916 Nuclear protein, conta 94.7 0.11 2.4E-06 47.5 6.6 125 59-184 175-328 (1283)
466 KOG2377 Uncharacterized conser 94.5 0.71 1.5E-05 39.3 10.5 112 54-168 56-172 (657)
467 PF12768 Rax2: Cortical protei 94.2 2.5 5.4E-05 34.2 16.2 114 87-201 16-146 (281)
468 PF11635 Med16: Mediator compl 94.2 5 0.00011 37.6 19.5 71 191-261 259-345 (753)
469 KOG4460 Nuclear pore complex, 94.1 1.3 2.8E-05 38.5 11.3 81 193-273 105-205 (741)
470 PF07995 GSDH: Glucose / Sorbo 94.0 2.3 4.9E-05 35.5 12.9 104 151-256 3-133 (331)
471 PF08801 Nucleoporin_N: Nup133 94.0 3.8 8.1E-05 35.4 18.0 31 237-267 190-220 (422)
472 PF12657 TFIIIC_delta: Transcr 93.9 0.63 1.4E-05 34.6 8.5 31 192-222 86-122 (173)
473 TIGR03548 mutarot_permut cycli 93.7 3.4 7.3E-05 34.2 17.5 106 76-182 72-197 (323)
474 PLN02153 epithiospecifier prot 93.7 3.6 7.9E-05 34.3 19.6 104 76-182 85-228 (341)
475 TIGR02276 beta_rpt_yvtn 40-res 93.6 0.41 8.9E-06 25.7 5.5 29 246-274 1-30 (42)
476 COG5276 Uncharacterized conser 93.5 3.3 7.1E-05 33.4 21.2 150 65-224 87-244 (370)
477 PRK14131 N-acetylneuraminic ac 93.5 4.2 9E-05 34.5 17.5 53 76-128 84-149 (376)
478 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.63 1.4E-05 25.0 6.0 31 201-231 1-32 (42)
479 PF14761 HPS3_N: Hermansky-Pud 93.4 2.7 6E-05 32.2 16.1 101 79-181 30-165 (215)
480 COG5290 IkappaB kinase complex 93.3 2.8 6.2E-05 38.4 12.5 94 149-247 246-347 (1243)
481 KOG1900 Nuclear pore complex, 93.1 1.7 3.6E-05 41.9 11.3 154 111-267 82-273 (1311)
482 TIGR03547 muta_rot_YjhT mutatr 93.0 4.8 0.0001 33.7 17.3 53 76-128 63-128 (346)
483 PLN02193 nitrile-specifier pro 93.0 6 0.00013 34.8 19.2 144 76-224 228-413 (470)
484 PF12657 TFIIIC_delta: Transcr 92.9 1.2 2.6E-05 33.1 8.7 31 150-180 86-122 (173)
485 PF11715 Nup160: Nucleoporin N 92.8 0.75 1.6E-05 41.2 8.8 72 159-230 156-257 (547)
486 COG5308 NUP170 Nuclear pore co 92.7 5.9 0.00013 37.0 13.6 136 84-222 99-276 (1263)
487 COG4590 ABC-type uncharacteriz 92.5 1 2.2E-05 38.4 8.3 159 106-270 219-390 (733)
488 PF03022 MRJP: Major royal jel 92.2 5.4 0.00012 32.5 18.4 134 130-267 35-216 (287)
489 COG4590 ABC-type uncharacteriz 92.2 0.9 2E-05 38.7 7.6 166 56-225 212-390 (733)
490 PF12768 Rax2: Cortical protei 92.0 5.5 0.00012 32.2 11.7 93 129-222 16-124 (281)
491 PF14779 BBS1: Ciliary BBSome 91.8 5.5 0.00012 31.6 18.8 68 150-218 177-255 (257)
492 PF10214 Rrn6: RNA polymerase 91.7 12 0.00026 35.3 21.7 159 105-267 77-277 (765)
493 TIGR03606 non_repeat_PQQ dehyd 91.7 8.4 0.00018 33.6 16.2 110 148-257 28-166 (454)
494 KOG2727 Rab3 GTPase-activating 91.5 3.7 8.1E-05 38.3 11.1 78 195-274 325-414 (1244)
495 PF07250 Glyoxal_oxid_N: Glyox 91.1 4.6 9.9E-05 31.9 10.2 94 172-265 47-147 (243)
496 PF02333 Phytase: Phytase; In 90.7 9.4 0.0002 32.3 23.3 194 70-267 59-291 (381)
497 smart00564 PQQ beta-propeller 90.6 0.84 1.8E-05 23.0 4.1 24 250-273 8-31 (33)
498 PF07995 GSDH: Glucose / Sorbo 90.5 9.2 0.0002 31.8 19.4 70 192-261 253-330 (331)
499 PF14269 Arylsulfotran_2: Aryl 90.1 9.4 0.0002 31.3 21.7 121 152-273 146-295 (299)
500 PF10214 Rrn6: RNA polymerase 90.0 17 0.00037 34.3 24.3 162 58-222 72-277 (765)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-45 Score=286.44 Aligned_cols=233 Identities=22% Similarity=0.366 Sum_probs=220.9
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
.....+++|.||.+.|.++.|+|. +..-+|+|+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence 445788999999999999999996 4778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
-++||+.++..+....+|..+|.+++|+|+|.++++|+.|..-+|||+|++.++..+.+|..+|..+.|+|+|..|+||+
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV 287 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~ 287 (288)
.|++++|||++....+.++.. |..-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|..-++|.|.+
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipA---H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPA---HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred CCCcEEEeeecccccceeccc---ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 999999999998888888887 888999999999 78999999999999999999999999998888777777654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-43 Score=273.37 Aligned_cols=231 Identities=28% Similarity=0.508 Sum_probs=204.8
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
-.++...+.||.++|.|++|+| ++..|++|+.|.++++||+.+..+..+.++|..-|.|++|+|||+.||+|+.||.|+
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred cceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 3456677889999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcee-EEeccCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEECCcccEEEEe-------------------
Q 023018 133 IWDPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMF------------------- 187 (288)
Q Consensus 133 i~d~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------- 187 (288)
+||..+++++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..++++..+
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliy 262 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIY 262 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEE
Confidence 9999988654 56889999999999987 5668999999999999998765543222
Q ss_pred --------------------------------------------------------------------------------
Q 023018 188 -------------------------------------------------------------------------------- 187 (288)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (288)
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence
Q ss_pred ---------------------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018 188 ---------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 188 ---------------------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (288)
.+|..-|..+.|+|+++++++++.|..|++||.++|+.+..+++ |-.+|+.++|+.
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsa 419 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSA 419 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEecc
Confidence 24455677889999999999999999999999999999888888 889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018 247 DSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV 287 (288)
Q Consensus 247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~ 287 (288)
|.++|++|+.|.++++|++++.++...+.++..-+|..||+
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 99999999999999999999999999997777777766664
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.1e-43 Score=292.49 Aligned_cols=214 Identities=26% Similarity=0.505 Sum_probs=204.1
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
.......++.||++||..++|+| +.++|++++.|+++++|.+.+...+..+.+|..||+++.|+|.|-|||+++.|++.
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred cCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 33455567999999999999999 88899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
++|......+++.+.+|.+.+.|+.|||+..++++|+.|.+|++||+.+|..++.|.+|.++|++++|+|+|++|++|+.
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
||.|.+||+.++..+..+.+ |.+.|.++.|+.+|.+|++|+.|.+|++||+..-.
T Consensus 598 d~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999888 78999999999999999999999999999997543
No 4
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=259.80 Aligned_cols=277 Identities=40% Similarity=0.691 Sum_probs=232.8
Q ss_pred CCCcccccccccCCCceeeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCC
Q 023018 7 NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGD 86 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d 86 (288)
--++++-+|..+++.|..++...+++++++.+++..+++++.-.......+..|..|+.+|.+++.+| +.+++|||+.|
T Consensus 7 ~iee~Evee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aTGGgD 85 (399)
T KOG0296|consen 7 FIEEEEVEEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGD 85 (399)
T ss_pred heehhhccccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEecCCC
Confidence 33444555556777777766666666666554444433332222222888999999999999999999 88999999999
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 166 (288)
..-++|++.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||...++.....+......|..+.|||.+.+|++
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA 165 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence 99999999999999999999999999999999999999999999999999999988888766778999999999999999
Q ss_pred ecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC--------------
Q 023018 167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-------------- 232 (288)
Q Consensus 167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------- 232 (288)
|+.||.+.+|.+.+....+.+.+|..++++=.|.|+|++++++..||+|++|++++++++..+...
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 999999999999998889999999999999999999999999999999999999998776443310
Q ss_pred ------------------------------------------------------------------------------Cc
Q 023018 233 ------------------------------------------------------------------------------PY 234 (288)
Q Consensus 233 ------------------------------------------------------------------------------~~ 234 (288)
-.
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~ 325 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE 325 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc
Confidence 00
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLD 285 (288)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d 285 (288)
|..+|..+.|-+ ..+|++++.+|.|+.||.+||+++.++. ++.+.+++|+
T Consensus 326 he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 326 HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 667789999988 6789999999999999999999999984 4555665554
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=267.55 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=204.8
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC--CCEEEEEeCCCeEEEEeCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 138 (288)
.|-+.||..+.|++ ++..||||+.+|.+++|+..+...+.++.+|...|.++.|+|. +..+|+|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 45678999999999 8899999999999999999999999999999999999999996 55899999999999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~ 218 (288)
..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|+|..+++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV 280 (288)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~ 280 (288)
|+++|.++..+.+ |..+|.++.|+|+|..|++|+.|++++|||++..+.+.++..|..+
T Consensus 331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 9999999999998 8899999999999999999999999999999999998888555433
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=242.25 Aligned_cols=227 Identities=24% Similarity=0.411 Sum_probs=206.6
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
....++.+|++.|+.++..+.+..++++++.|..+.+|++.. |.+++.+.+|...|..+..+++|++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345688999999999999997789999999999999999864 667889999999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCC--CCE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPD--GKT 205 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~--~~~ 205 (288)
++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++.... ..++..+ ...|.|+.|+|+ ..+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999986554 4444433 789999999997 678
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAY 282 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~ 282 (288)
|++++.|++|++||+++.+....+.+ |...++.+.++|||.++++|+.||.+.+||++.++.+..+ ..+.+++|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f 241 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF 241 (315)
T ss_pred EEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe
Confidence 99999999999999999888777777 7889999999999999999999999999999999999888 66888888
Q ss_pred eec
Q 023018 283 DLD 285 (288)
Q Consensus 283 ~~d 285 (288)
+|.
T Consensus 242 spn 244 (315)
T KOG0279|consen 242 SPN 244 (315)
T ss_pred cCC
Confidence 875
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-39 Score=241.36 Aligned_cols=219 Identities=22% Similarity=0.351 Sum_probs=199.5
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
+...+.+++.|.||+..|..++.++ +++++++++.|+++++||+.+++..+.|.+|...|.+++|+++.+.|++|+.|.
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 4456788999999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccC-CCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 130 LVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
+|++|++-........... ...|+|+.|+|+ ..+|++++.|++|++||+++-+....+.+|.+.++.+.++|||...
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 9999998766554444433 788999999997 6799999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
++|+.||.+.+||++.++.+..+. +...|.+++|+|+..+|+.+. +..|+|||+.++.++..+
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred ecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 999999999999999999988887 778999999999877776664 556999999999988776
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=237.18 Aligned_cols=230 Identities=22% Similarity=0.406 Sum_probs=211.1
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
....-+..++|+||.+.|.++.|++ +.+.+++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+|+-|.
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence 3344566699999999999999999 888999999999999999999888888887888999999999999999999999
Q ss_pred eEEEEeCCCC------ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-C
Q 023018 130 LVQIWDPSSG------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-D 202 (288)
Q Consensus 130 ~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~ 202 (288)
...||++.+. +..+.+.+|.+.+.++.|-+ ...|++++.|.++.+||+++++.+..|.+|.+.|.++.++| +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999999855 45567889999999999987 56899999999999999999999999999999999999999 9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cc
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQ 276 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~ 276 (288)
++.+++|+-|+..++||++.+...+.|.+ |...|++++|.|+|.-+++|+.|++.++||++..+.+..+ .+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 99999999999999999999999999998 8899999999999999999999999999999999999887 56
Q ss_pred eEEEEEee
Q 023018 277 YTCVAYDL 284 (288)
Q Consensus 277 ~~~~~~~~ 284 (288)
+.+++||.
T Consensus 276 itSv~FS~ 283 (343)
T KOG0286|consen 276 ITSVAFSK 283 (343)
T ss_pred ceeEEEcc
Confidence 66777654
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.4e-39 Score=268.43 Aligned_cols=226 Identities=27% Similarity=0.443 Sum_probs=209.0
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------------------------------eeeEeecccc
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------------------------------DWASEIQGHK 107 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~~~ 107 (288)
++..-...++|..|++ +..++|.|-.|..|++|.+... ....++.+|.
T Consensus 373 T~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3333345799999999 7789999999999999998731 1234467899
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe
Q 023018 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (288)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 187 (288)
++|....|+|+.++|++++.|+++++|.+.+...+..+++|..+|+.+.|+|.|.+||+++.|++.++|.....++++.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.+|-+.|.|+.|+|+..|+++|+.|.++|+||+.+|..++.|.+ |..+|.+++|+|+|++|++|+.||.|.+||+.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred CcEEEEecceEEEEEeecccC
Q 023018 268 GKVCCLNFQYTCVAYDLDFVL 288 (288)
Q Consensus 268 ~~~~~~~~~~~~~~~~~df~~ 288 (288)
|+++..+.++++..+|..|+.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred CcchhhhhcccCceeEEEEec
Confidence 999999988888888888763
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=222.05 Aligned_cols=224 Identities=21% Similarity=0.336 Sum_probs=197.7
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
+.|+..+.+|+..|+++.|.- +++.+++|+.||+++|||++.....+.+. |..+|+++..+|+..-|++|..+|.|++
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred CCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEE
Confidence 448999999999999999998 89999999999999999999966666665 7899999999999999999999999999
Q ss_pred EeCCCCceeEEe-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc------cEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 134 WDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 134 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
||+........+ +.....|.++...|+|.+++.+...|..++|++-+. .++.+++.|.+.+..+.+||++++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 999988655544 345568999999999999999999999999998654 4677888999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEE
Q 023018 207 CTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~ 282 (288)
++++.|.+++||+..+. +....+.+ |...++.++||.+|.+|++|+.|+.+++|++..++.++...++.....
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~g---h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTG---HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeec---CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence 99999999999999876 34445555 778999999999999999999999999999999999998866654443
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=241.77 Aligned_cols=207 Identities=25% Similarity=0.469 Sum_probs=186.1
Q ss_pred CCCeeEeecCCCCEEEEEEcCC----CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPT----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
...-..|++|...|++++|.|- ..++||+++.||.++|||+..++.+..+.+|..+|+|++|--+| +|++|+.|+
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Dr 268 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDR 268 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCc
Confidence 4455688999999999999982 45689999999999999999999999999999999999997554 899999999
Q ss_pred eEEEEeCCCCceeEEe----------------------------------------------------------------
Q 023018 130 LVQIWDPSSGNLKCTL---------------------------------------------------------------- 145 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~---------------------------------------------------------------- 145 (288)
+|++|+...|+....+
T Consensus 269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 9999986654433322
Q ss_pred ---------------ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 146 ---------------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 146 ---------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
.+|..-|+.+.|+|+++++|+++.|..|++|+.++|+.+.+|++|-.+|+.++|+.|.++|++|+
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC
Confidence 23455688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
.|.++++|++++.+....+.+ |...|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpG---h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPG---HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCC---CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999888877777 889999999999999999999999999994
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=238.94 Aligned_cols=227 Identities=26% Similarity=0.412 Sum_probs=211.4
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
...|-+..+.+++|.+-|.|+++.| ....|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 4456677888999999999999999 788999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
.|+.||+...+.++.+.+|-+.|.+++.+|.-..|++|+.|.++++||+|+...+..+.+|..+|.++.+.|-...+++|
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEE
Q 023018 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVA 281 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~ 281 (288)
+.|++|++||++.|+...++.. |...+.+++.+|....+++++.| .|+-|++..|..+..+.++..+.
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred cCCceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 9999999999999998888776 78899999999998888888766 69999999999888775555444
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=223.90 Aligned_cols=231 Identities=25% Similarity=0.414 Sum_probs=209.5
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC------eeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (288)
....++.+.-.+.-|..++|+| .++++|+|+.|....||++.+. +..+.+.+|.+-+.|+.|.++ ..|++++
T Consensus 86 TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 86 TTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred cccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecC
Confidence 3445566666677899999999 8999999999999999999854 455678899999999999875 4789999
Q ss_pred CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.++++|.+|.+.|.+++|.|+|.-
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEE
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVA 281 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~ 281 (288)
+++|+.|++.++||++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+. .++|+.
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 9999999999999999999888887433 66789999999999999999999999999999999999984 467788
Q ss_pred Eeecc
Q 023018 282 YDLDF 286 (288)
Q Consensus 282 ~~~df 286 (288)
.+||-
T Consensus 323 ~s~DG 327 (343)
T KOG0286|consen 323 VSPDG 327 (343)
T ss_pred ECCCC
Confidence 77764
No 14
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.7e-35 Score=248.70 Aligned_cols=229 Identities=18% Similarity=0.300 Sum_probs=193.3
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCC-CEEEEEeCCC
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG 129 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 129 (288)
..+.+|.++|++++|+|.++.+|++|+.||+|++|++.+. ..+..+.+|...|.+++|+|.+ .+|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4578999999999999977789999999999999999764 3566788999999999999975 6899999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC-eEEEEEcCCCCEEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICT 208 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~p~~~~l~~ 208 (288)
+|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999998899999999999999999999999999999999999999999888888764 456789998888776
Q ss_pred Ee----CCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe-----cce
Q 023018 209 GS----DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN-----FQY 277 (288)
Q Consensus 209 ~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~-----~~~ 277 (288)
++ .|+.|++||+++... +...... ....+....|++++.+|++++ .||.|++||+.+++++... .++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 54 478999999987653 3332221 234566677899999998887 5999999999999987765 356
Q ss_pred EEEEEeecccC
Q 023018 278 TCVAYDLDFVL 288 (288)
Q Consensus 278 ~~~~~~~df~~ 288 (288)
.+++|.|.+.+
T Consensus 307 ~g~~~~pk~~~ 317 (493)
T PTZ00421 307 KGLCMMPKWSL 317 (493)
T ss_pred cceEecccccc
Confidence 78888887753
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-38 Score=245.63 Aligned_cols=227 Identities=26% Similarity=0.428 Sum_probs=203.2
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
....+++.|.++|.++.|++ ++..+++|+.+|.|++|+..-. .++.++. |...|++++|+|+...|++++.||+|+|
T Consensus 129 nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence 33456678999999999999 8899999999999999997643 3445554 4589999999999999999999999999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
||....+....+.+|.--|.+++|+|...+|++|+.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|.
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-cceEEEEEeecc
Q 023018 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN-FQYTCVAYDLDF 286 (288)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~-~~~~~~~~~~df 286 (288)
.+++||+++.+.+..+++ |...++++.|+| ...+|.+|+.||.|..|.+...+++..+ ..+...+||.+|
T Consensus 287 ~~kv~DiR~mkEl~~~r~---Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRG---HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred eEEEEehhHhHHHHHhhc---chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeec
Confidence 999999998888888887 888999999999 6788999999999999999977776666 556666666655
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=234.45 Aligned_cols=231 Identities=21% Similarity=0.372 Sum_probs=214.9
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
...+....|+||.+.|..++|+. .++++|+++.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 33455778899999999999999 789999999999999999987 5677778899999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC--------
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-------- 202 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~-------- 202 (288)
|+.|++.++-.+.++.+|...+..++.+.+|.++++++.|.++++|-+.++++...++.|.-+|-+++|.|.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018 203 -------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF 275 (288)
Q Consensus 203 -------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~ 275 (288)
++++++++.|++|++||+.++.++.++.+ |...|..++|+|.|++|+++..|+++++||++++++.+++.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 25899999999999999999999999998 88999999999999999999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 023018 276 QYTCVAYDLDF 286 (288)
Q Consensus 276 ~~~~~~~~~df 286 (288)
.+...+-+.||
T Consensus 374 ah~hfvt~lDf 384 (406)
T KOG0295|consen 374 AHEHFVTSLDF 384 (406)
T ss_pred CCcceeEEEec
Confidence 88777777766
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-35 Score=236.62 Aligned_cols=232 Identities=21% Similarity=0.399 Sum_probs=211.6
Q ss_pred CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018 47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (288)
......++..+.+|..|.+||.++.|+. .+.+|++++.||++.+||..++.....+..|..+..++.|-.+ ..|++++
T Consensus 259 ~riw~~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~ 336 (524)
T KOG0273|consen 259 ARIWNKDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSS 336 (524)
T ss_pred EEEEecCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecC
Confidence 4445577788888999999999999999 8889999999999999999999999999989988888999754 4689999
Q ss_pred CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC---
Q 023018 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--- 203 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~--- 203 (288)
.||.|+|+.+....+..++.+|.+.|.++.|+|.+.+|++++.|++++||..........+.+|...|..+.|+|.|
T Consensus 337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~ 416 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT 416 (524)
T ss_pred CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--
Q 023018 204 ------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF-- 275 (288)
Q Consensus 204 ------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~-- 275 (288)
..+++++.|++|++||+..+.++..+.. |..+|.+++|+|+|++|++|+.||.|.+|+++++++++.+.
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 4689999999999999999999999977 88999999999999999999999999999999999999883
Q ss_pred -ceEEEEEe
Q 023018 276 -QYTCVAYD 283 (288)
Q Consensus 276 -~~~~~~~~ 283 (288)
.+..+.|+
T Consensus 494 ~~Ifel~Wn 502 (524)
T KOG0273|consen 494 GGIFELCWN 502 (524)
T ss_pred CeEEEEEEc
Confidence 33444444
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.6e-37 Score=246.65 Aligned_cols=233 Identities=22% Similarity=0.401 Sum_probs=205.2
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
.|.+.++.+.||+..|+++.|.|..+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|+++|..|++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 477888999999999999999998889999999999999999987 8899999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
|++||+++|+++..+... ..+.++.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-++|..+.|-+++++++++
T Consensus 282 lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 999999999999998743 468999999987 799999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEE----------------------------------------------EcCCCccccCeEEEE
Q 023018 210 SDDATLRVWNPKSGENIHV----------------------------------------------IRGHPYHTEGLTCLT 243 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~----------------------------------------------~~~~~~~~~~v~~~~ 243 (288)
+.|+.++||+.+..-++.. +.++. ..+.-..+.
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~~v~ 439 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSCQVD 439 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCceeeEE
Confidence 9999999999765432211 11111 112245689
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018 244 ISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286 (288)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df 286 (288)
|||||.+|++|+.||.+.+||.+|-+++..+..+..++.+.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 9999999999999999999999999999999777666666655
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=249.46 Aligned_cols=221 Identities=29% Similarity=0.509 Sum_probs=200.1
Q ss_pred eeEeecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...+.+| ...|.++.|++ ++..+++++.++.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 4555454 78999999999 77789999999999999997777 67777889999999999999999999999999999
Q ss_pred EeC-CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 134 ~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
||+ ..+..++++.+|...|++++|+|.++++++|+.|++|++||+++++++..+.+|..+|++++|++++++|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEE
Q 023018 213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279 (288)
Q Consensus 213 g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~ 279 (288)
+.|+|||+.++. +...+....... +++++.|+|++.+|++++.|+.+++|++.+++++..+.++..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 999999999998 456666654334 799999999999999999999999999999999888755443
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-36 Score=218.10 Aligned_cols=228 Identities=25% Similarity=0.365 Sum_probs=209.5
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
.+.|.+..+++..|+++|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.+...|++|+.|.
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence 4566778899999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
.+.+||+.+|+..+.+++|.+.|+.++|+.+...+++|+.|..+++||.++. ++++.+......|.++..+ +..++
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 9999999999999999999999999999999999999999999999999874 7888888888899999886 56799
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeec
Q 023018 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLD 285 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~d 285 (288)
+|+.||+++.||++.|+...-. ...+|++++|+++++.+++++.|+++++.|-.||++++.+.++....|-.|
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 9999999999999998765444 457899999999999999999999999999999999999988777666554
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-35 Score=250.20 Aligned_cols=228 Identities=32% Similarity=0.557 Sum_probs=202.4
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc-cCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
..+.+.+|...|.+++|+| ++.++++++.|++|+||++ ..+..++++.+|...|++++|+|+++++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 5667789999999999999 8889999999999999999 5568899999999999999999999999999999999999
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEeeccCCC--eEEEEEcCCCCEEEEEe
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS 210 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~p~~~~l~~~~ 210 (288)
|+.++++...+.+|..+|++++|++++++|++++.|+.|++||+.++. ++..+..+..+ ++++.|+|++.+|++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999998 56677666555 99999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecce-EEEEEee
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQY-TCVAYDL 284 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~-~~~~~~~ 284 (288)
.|+.+++||+..+..+..+.++......+.+...++.+.++++|+.|+.|++|++.++..+..+.++ .......
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL 428 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence 9999999999999988888875322124445556778999999999999999999999888888666 4444433
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-33 Score=211.11 Aligned_cols=211 Identities=29% Similarity=0.489 Sum_probs=185.9
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEee-ccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
..++.+++|.+.|..++|+|..+.+||+|+.|..|++|+... ..+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 457889999999999999994388999999999999999984 3333334 369999999999999999999999999
Q ss_pred EEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCCCCE
Q 023018 131 VQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 131 i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
+.||.-..+ +.+..+.+|...|.+++|+++|++||+++.|+.|.||.+... .+...++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999976543 678889999999999999999999999999999999998743 578889999999999999999999
Q ss_pred EEEEeCCCeEEEEeCC---CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 206 ICTGSDDATLRVWNPK---SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
|++++.|.+|++|+-. ...+..++.+ |...|.+++|++.|..|++++.|++++||...+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 9999999999999866 2356777777 6779999999999999999999999999996643
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-34 Score=239.36 Aligned_cols=215 Identities=28% Similarity=0.475 Sum_probs=194.3
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
..+...+||...+++++++| +++++|||+.||.|+|||..++-+..++..|...|+.+.|+..++.+++++-||+|+.|
T Consensus 341 sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 44556678999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeEEeccCC-CCEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 135 DPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 135 d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
|+...+..++|..+. ....|++..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|.+||.+++|+|.+..|++++.|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 999999888887654 3578899999999999999886 59999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 213 ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 213 g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+|++||+-.. ..+.++. ....+..++|+|+|.-|++++.||.|.+||+..+..+..+
T Consensus 500 kTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred ceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999998644 3445555 5677999999999999999999999999999887766433
No 24
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.7e-33 Score=238.92 Aligned_cols=231 Identities=15% Similarity=0.281 Sum_probs=185.0
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--------eeEeeccccCcEEEEEEecCCCE-EEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEIQGHKDSVSSLAFSMDGQL-LASG 125 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 125 (288)
.++..+.+|.++|.+++|+|.++.+||+|+.||+|+||++.++. ++..+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 56788999999999999999667899999999999999997632 34467889999999999998875 5788
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE-----EEEc
Q 023018 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC-----GDFT 200 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-----~~~~ 200 (288)
+.|++|+|||+.+++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+.. ..|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998777775 5567999999999999999999999999999999999999999876533 2345
Q ss_pred CCCCEEEEEeCCC----eEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018 201 PDGKTICTGSDDA----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN- 274 (288)
Q Consensus 201 p~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~- 274 (288)
+++.+|++++.++ .|+|||+++ +.++..+... .+...+......+++.++++|+.|+.|++|++.++.....-
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc
Confidence 8889999988764 799999995 4555544321 13333334444556889999999999999999887533221
Q ss_pred ----cceEEEEEeeccc
Q 023018 275 ----FQYTCVAYDLDFV 287 (288)
Q Consensus 275 ----~~~~~~~~~~df~ 287 (288)
.++.+++|.|+-.
T Consensus 303 ~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 303 YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cccCCCccceEEccccc
Confidence 4567788877653
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.1e-36 Score=233.99 Aligned_cols=211 Identities=23% Similarity=0.437 Sum_probs=189.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
..+|..+.|.| +++.|++|+..|.+.+|+.........++.|..+|.++.|++++.++++|..+|.|++|+..-.....
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 34799999999 88888999999999999986665556678899999999999999999999999999999976554433
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
....|...|++++|+|+...|++++.||+|+|||....+.-..+.+|.-.|.++.|+|....|++++.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 33334478999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceE
Q 023018 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYT 278 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~ 278 (288)
.++.++.. |+..|..+.|.|++++|++++.|..++++|+++.+.+..+.++.
T Consensus 255 ~cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 255 SCLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred chhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence 99999887 88999999999999999999999999999999888877775443
No 26
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=231.79 Aligned_cols=237 Identities=20% Similarity=0.291 Sum_probs=184.5
Q ss_pred CCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeec-cccCcEEEEEEecCCCEE
Q 023018 48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQ-GHKDSVSSLAFSMDGQLL 122 (288)
Q Consensus 48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~i~~~~~~~~~~~l 122 (288)
.....|......+++|+..|.++++.| .+..|++|+.|.+|++||+.... ..+.+. .....|.++.|++.+..|
T Consensus 151 ~~~~IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 151 IIKLIPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred hhhcCCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeE
Confidence 345578888899999999999999999 78889999999999999997532 122222 345679999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEE------------eccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCccc-EEEEee
Q 023018 123 ASGGLDGLVQIWDPSSGNLKCT------------LEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA-YLNMFS 188 (288)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 188 (288)
++.+.....+|+|-........ -++|...+++.+|+|. ...+++++.||++++|++...+ .+.+++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 8888889999999554333222 2467788999999995 4589999999999999997653 333443
Q ss_pred -----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc--CeEEEEEcCCCCEEEEEeCCCcEE
Q 023018 189 -----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVH 261 (288)
Q Consensus 189 -----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~ 261 (288)
+..-+++.++|+|+|..+|+|+.||.|.+|+..+......+.....|.. .|+++.||++|++|++-+.|++++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2345789999999999999999999999999865433222222222444 899999999999999999999999
Q ss_pred EEEcCCCcEE-EEe------cceEEEEEeec
Q 023018 262 MVNITTGKVC-CLN------FQYTCVAYDLD 285 (288)
Q Consensus 262 iwd~~t~~~~-~~~------~~~~~~~~~~d 285 (288)
+||++..+.. ... +.-+.++|||+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCC
Confidence 9999876433 322 66778888886
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.5e-33 Score=222.42 Aligned_cols=224 Identities=32% Similarity=0.574 Sum_probs=202.4
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
++.+++|.++|++++|+| ++.++++++.+|.|++|++.+++....+..|...+..+.|+|++++|++++.+|.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 456789999999999999 7789999999999999999998888888889999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
.+++....+..+...+.++.|+++++++++++.+|.|++|++++++....+..|...+.++.|+|++.++++++.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888888888999999999988888888899999999998888888888999999999999988998888899999
Q ss_pred EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL 284 (288)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~ 284 (288)
+||+++++....+.. +...+.++.|+|++..|++++.+|.|++||+++++.+..+ ..+.++.|++
T Consensus 161 i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 161 LWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred EEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 999998887777765 6678999999999999999999999999999998888776 3566666666
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=222.11 Aligned_cols=229 Identities=26% Similarity=0.407 Sum_probs=210.4
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
.+....+.+.+|..+|+.+-|+| ...++++++.|++|++||+.+++....+++|...+.+++|+..|+++++++.|-.+
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 44467788899999999999999 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 132 QIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 132 ~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 466777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVCCLN- 274 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~t~~~~~~~- 274 (288)
.|.+|++|-+.++++...++. |..+|-+++|.|. ++++++++.|++|++||+.+|+++.++
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred CCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 999999999999988778877 7788999998762 258999999999999999999999999
Q ss_pred ---cceEEEEEee
Q 023018 275 ---FQYTCVAYDL 284 (288)
Q Consensus 275 ---~~~~~~~~~~ 284 (288)
..+++++|+|
T Consensus 332 ghdnwVr~~af~p 344 (406)
T KOG0295|consen 332 GHDNWVRGVAFSP 344 (406)
T ss_pred cccceeeeeEEcC
Confidence 4567888874
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-33 Score=222.81 Aligned_cols=215 Identities=25% Similarity=0.439 Sum_probs=194.4
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (288)
..|++++|+. ++.+||+|+.||.++||+.. +..+.++..|++||.++.|+..|.||++++.|+++.+||..++.....
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 5799999998 89999999999999999965 677888999999999999999999999999999999999999999999
Q ss_pred eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (288)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~ 224 (288)
+.-|..+-..+.|-. ...+++++.|+.|+++.+....++.++.+|.++|.+|.|.|.+.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 988888777888875 4588999999999999999999999999999999999999999999999999999999988877
Q ss_pred eeEEEcCCCccccCeEEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018 225 NIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d 285 (288)
....+.. |...|..+.|+|.| ..|++++.|++|++||+..|.++.++ .++..++|+|+
T Consensus 393 ~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 393 SVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred chhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 7777776 78889999999854 47899999999999999999999999 45666666654
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=229.83 Aligned_cols=225 Identities=22% Similarity=0.363 Sum_probs=197.6
Q ss_pred eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC-CeEEEEeCCC
Q 023018 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSS 138 (288)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~ 138 (288)
+...+..|+|.+|++ +..+||+|-..|...+|.+.....++.+.-...+|..++|+..|.+||.||.. |.+-||+.++
T Consensus 261 ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 334457899999999 88999999999999999999999999998878899999999999999999754 8999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~ 218 (288)
...+...++|...+.+++++|+|+++++|+.||.|+|||.+++-+..+|..|.+.|+.+.|+..|+.|++++.||+|+.|
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeEEEcC-----------------------------------------CCccccCeEEEEEcCCCCEEEEEeCC
Q 023018 219 NPKSGENIHVIRG-----------------------------------------HPYHTEGLTCLTISADSTLALSGSKD 257 (288)
Q Consensus 219 d~~~~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (288)
|+......+++.. ..+|.++|.+++|+|.+..|++++.|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 9876544433321 12388999999999999999999999
Q ss_pred CcEEEEEcCCC----cEEEEecceEEEEEeec
Q 023018 258 GSVHMVNITTG----KVCCLNFQYTCVAYDLD 285 (288)
Q Consensus 258 g~i~iwd~~t~----~~~~~~~~~~~~~~~~d 285 (288)
.+|++||+-.. +.+.....+..+.|.||
T Consensus 500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred ceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 99999998543 33344466777777776
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=208.42 Aligned_cols=233 Identities=25% Similarity=0.383 Sum_probs=185.1
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
-..++-.+.+|.+.|+.+.|+| ++.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred ccchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 3466778899999999999999 89999999999999999954 456677788999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECC-------------------------------
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNAD------------------------------- 179 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~------------------------------- 179 (288)
+.||.++|+..+.++.|..-++++.-...|. ++.+++.||++++||+|
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccc
Confidence 9999999998888877765555554322222 33344445555555554
Q ss_pred ----------cccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCC-ccccCeEEEEE
Q 023018 180 ----------RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG----ENIHVIRGHP-YHTEGLTCLTI 244 (288)
Q Consensus 180 ----------~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~-~~~~~v~~~~~ 244 (288)
.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++.. .++..+.++. ........++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 44445666789999999999999999999999999999999743 2355565543 12234567899
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018 245 SADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286 (288)
Q Consensus 245 ~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df 286 (288)
+|+++.+.+|+.|..+++||..+.+.+..+.++.+.+-..+|
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF 316 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee
Confidence 999999999999999999999999999988666555544444
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=201.40 Aligned_cols=234 Identities=18% Similarity=0.310 Sum_probs=195.6
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
-..+.+..+++...+.|..+...| ++..||+++. -.|++||+.++. ++.++.+|...|+++.|..+|+++++|+.|
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 356777888887888999999999 7778888776 689999998854 688999999999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEE
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~ 207 (288)
|+++|||++.....+.+. +.++|+++..+|+...|++|..+|.|++||++...+...+. ....+|.++...|+|.+|+
T Consensus 105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 999999999966665555 66899999999999999999999999999999876555443 3456899999999999999
Q ss_pred EEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEecceEEEEEe
Q 023018 208 TGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLNFQYTCVAYD 283 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~~~~~~~~~~ 283 (288)
.+...|..++|++-+.+. +..+...+.|...+..+.+||++++|++++.|.+++||++.+. +.-..+.++..-.|.
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 999999999999876432 2333334458888999999999999999999999999999988 555555666555555
Q ss_pred eccc
Q 023018 284 LDFV 287 (288)
Q Consensus 284 ~df~ 287 (288)
..|+
T Consensus 264 c~FS 267 (311)
T KOG0315|consen 264 CAFS 267 (311)
T ss_pred eeec
Confidence 5554
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2e-32 Score=203.97 Aligned_cols=223 Identities=20% Similarity=0.336 Sum_probs=201.9
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (288)
..++||..+++.+.++. ++.+|++++.|.+..+|-..+++.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46889999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECC-------cccEEEEeeccCCCeEEEEEcCCCCE
Q 023018 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
+|+++..++.. .+|..+.|++.|++++.++. .+.|.++|++ ...++..+..+.+.++.+-|.|-+++
T Consensus 83 tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 99999998854 57999999999998888764 4679999998 34567888888899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAY 282 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~ 282 (288)
|++|..+|.|.+||+++|+.+.... ..|...|+.++++|+..++++++.|.+-++||+.+.++++++ .++.+.++
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceec
Confidence 9999999999999999986543332 227889999999999999999999999999999999999988 77888888
Q ss_pred ee
Q 023018 283 DL 284 (288)
Q Consensus 283 ~~ 284 (288)
+|
T Consensus 240 sP 241 (327)
T KOG0643|consen 240 SP 241 (327)
T ss_pred cc
Confidence 87
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=208.25 Aligned_cols=222 Identities=20% Similarity=0.348 Sum_probs=192.4
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCce
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 141 (288)
.+.+..++|++.....+++++.||.++|||+.. ..++..++.|...|.++.|++. ...+++++.||+|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 567999999998889999999999999999654 4578889999999999999984 45788889999999999999999
Q ss_pred eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 023018 142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWN 219 (288)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d 219 (288)
+.++.+|...|...+|+| ..+.+++++.|+++++||++..-....+..|...|.++.|+. +.+.|+||+.|+.|++||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 999999999999999999 677999999999999999987644455888999999999998 667899999999999999
Q ss_pred CCCCc-eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-EEEEecceEEEEEeecccC
Q 023018 220 PKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK-VCCLNFQYTCVAYDLDFVL 288 (288)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~-~~~~~~~~~~~~~~~df~~ 288 (288)
+++.+ ++..+.+ |.-.|+.+.|||. ..+|++++.|-+++|||...+. ++.+...++..++..||++
T Consensus 220 ir~~r~pl~eL~g---h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 220 IRNLRTPLFELNG---HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred hhhccccceeecC---CceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence 98754 4455544 8899999999994 5788999999999999998544 4445577888888888875
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=233.09 Aligned_cols=229 Identities=24% Similarity=0.408 Sum_probs=201.1
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEecCC-CEEEEE
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDG-QLLASG 125 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 125 (288)
..+....+++.||+..|.++.... .+-+|++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|+++
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence 345556669999999999999444 55799999999999999885432 445567899999999997654 489999
Q ss_pred eCCCeEEEEeCCCCce-----e----EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018 126 GLDGLVQIWDPSSGNL-----K----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~~-----~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (288)
+.|+++++|++...+. . .....|...|++++++|+.++|+||+.|.+.++|++++.....++.+|...|++
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 9999999999976221 1 123458889999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ 276 (288)
Q Consensus 197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~ 276 (288)
+.|+|..+.+++++.|++|+||.+.+..+++++.+ |...|..+.|-.++..|++++.||-|++|+++++.|++++..
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccccceeEeccCCceEEEEEeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 99999999999999999999999999999999998 889999999999999999999999999999999999999977
Q ss_pred eEEEEEe
Q 023018 277 YTCVAYD 283 (288)
Q Consensus 277 ~~~~~~~ 283 (288)
|+.-+|+
T Consensus 588 H~DrvWa 594 (775)
T KOG0319|consen 588 HNDRVWA 594 (775)
T ss_pred ccceeEE
Confidence 7766654
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=222.99 Aligned_cols=207 Identities=22% Similarity=0.509 Sum_probs=186.0
Q ss_pred CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
.+........++.||++.|.|+.|.. +++++|+.|.+|+|||+++++++.++-.|...|..+.|+ ..++++++.|
T Consensus 222 WD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkD 296 (499)
T KOG0281|consen 222 WDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKD 296 (499)
T ss_pred eccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCC
Confidence 34455677889999999999999954 599999999999999999999999999999999999996 4489999999
Q ss_pred CeEEEEeCCCCc---eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018 129 GLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 129 g~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
.+|.+||+.... ..+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+...++++.+|...|.|+.+ .+++
T Consensus 297 rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rl 372 (499)
T KOG0281|consen 297 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRL 372 (499)
T ss_pred ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeE
Confidence 999999998764 334567899999999995 569999999999999999999999999999999999887 4889
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+++|+.|.+|++||+..|.+++.+.+ |+.-|.++.|. ...+++|+.||+|++||+.++.
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhc---hHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence 99999999999999999999999988 78889999995 5689999999999999998864
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=207.34 Aligned_cols=210 Identities=22% Similarity=0.395 Sum_probs=190.0
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
........+.+|.+.|+++.|+. ++.+||||+.+|.|+||...++.....+......|.-+.|+|.+..|+.|+.||.+
T Consensus 94 ~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred cCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 34456778889999999999999 89999999999999999999998888887566778889999999999999999999
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-----------------------
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------------------- 188 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------- 188 (288)
-+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++|++.+++++.++.
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 999999988899999999999999999999999999999999999998876643331
Q ss_pred ------------------------------------------------------------------------ccCCCeEE
Q 023018 189 ------------------------------------------------------------------------GHGSSVTC 196 (288)
Q Consensus 189 ------------------------------------------------------------------------~~~~~i~~ 196 (288)
.|..+|+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 24667888
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
+.|.+ ..+|++++.+|.|+.||.|+|+.+..+.+ |..+|..++++|+.+++++++.|+..+||++.
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 89988 68999999999999999999999999998 78899999999999999999999999999874
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-31 Score=212.85 Aligned_cols=226 Identities=31% Similarity=0.583 Sum_probs=202.7
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
....+.+|...+..+.|+| ++.++++++.+|.|++|++.+++.+..+..|...+.++.|++++.++++++.+|.|++|+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 6677889999999999999 667889999999999999998888888888999999999999988888888899999999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
+.+++....+..|...+.+++|+|++.++++++.+|.|++||+++++.+..+..|...+.++.|+|+++.+++++.++.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 99888888888888899999999998899988889999999999998888888898899999999999999999999999
Q ss_pred EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLD 285 (288)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d 285 (288)
++||+++++.+..+.. +...+.++.|+|++.++++++.+|.|++|++.+++.+..+. .+.++.|+++
T Consensus 202 ~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 202 KLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred EEEECCCCceecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 9999998887777754 66789999999998888888889999999999988888773 4566777664
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=200.07 Aligned_cols=224 Identities=25% Similarity=0.379 Sum_probs=198.7
Q ss_pred CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018 47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (288)
...++.....++++.+|...|..++.+. +...+++|+.|..+.+||+.+++..+.+.+|.+.|+.+.|+.+...+++|+
T Consensus 42 rLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 42 RLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS 120 (307)
T ss_pred EeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence 3456788899999999999999999998 777889999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018 127 LDGLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (288)
Q Consensus 127 ~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~ 204 (288)
.|.++++||.++. ++++.+......|.++... +..|++|+.||+++.||++.|+....+. ..||++++|+++++
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGN 196 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCC
Confidence 9999999998765 6777787778889999885 6789999999999999999998776664 56899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ 276 (288)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~ 276 (288)
.+++++.+++|++.|-.+|+.+....++...... ..+++......+++|++||.|++||+...+++..+..
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceee-eeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 9999999999999999999999999886543333 3456676778899999999999999999998887743
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=226.53 Aligned_cols=227 Identities=21% Similarity=0.325 Sum_probs=207.9
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
.+++..|+..|.++.|+| ....++++-..|.|.||+.++...++.+....-||.+..|-+..+++++|+.|+.|+||+.
T Consensus 6 krk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 345666999999999999 5567778888999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCe
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT 214 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~ 214 (288)
.+++.++.|..|...|++++.||...++++++.|-+|++||.+.. .+.+++.+|...|++++|.| |.+.+++++.|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 999999999999999999999999999999999999999999765 78899999999999999999 7889999999999
Q ss_pred EEEEeCCCCceeEEEcCCCccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeeccc
Q 023018 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLDFV 287 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~df~ 287 (288)
|+||.+.+..+..++.+ |..+|+++.+-+. ..+|++|+.|..|+|||.+|.+|+.++. .+..+.|.|.|.
T Consensus 165 VKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred EEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999998888899987 8899999999884 4699999999999999999999999984 456777777653
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=225.92 Aligned_cols=217 Identities=22% Similarity=0.336 Sum_probs=199.8
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...++.+.-..-||.+..|-+ ..+.+++|+.|..|+||++.+++.+..+..|..-|.+++.+|...++++++.|-+|++
T Consensus 45 qtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 45 QTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred ceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence 344556666677899999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC--CCEEEEE
Q 023018 134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--GKTICTG 209 (288)
Q Consensus 134 ~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~--~~~l~~~ 209 (288)
||.... .+.++|.+|...|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|.|+.+-+. ..+|++|
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 999866 56778999999999999999 6779999999999999999999999999999999999999984 4689999
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+.|.+|+|||..+.++++++.+ |...|..++|+|.-.++++|++||+++||+..|-++..++
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeG---Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEG---HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred CCCceEEEeecchHHHHHHhhc---ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 9999999999999999999998 8889999999999999999999999999999987766555
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=231.38 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=196.1
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----eE----eeccccCcEEEEEEecCCCEE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----AS----EIQGHKDSVSSLAFSMDGQLL 122 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~----~~~~~~~~i~~~~~~~~~~~l 122 (288)
....++....+|++.|.+++++..+..+|++++.|+++++|++...+. +. ....|...|++++++|+.++|
T Consensus 399 ~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi 478 (775)
T KOG0319|consen 399 SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI 478 (775)
T ss_pred chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE
Confidence 344556677899999999999988889999999999999999986221 11 234699999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~ 202 (288)
|+|+.|.+.+||++.......++.+|..++.++.|+|..+.+++++.|++|+||.+.+..+++++.+|...|..+.|-.+
T Consensus 479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~ 558 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN 558 (775)
T ss_pred EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
+..|++++.||.|++|+++++.+..++.. |...|++++.+|...++++|+.||.|.+|.=.|
T Consensus 559 ~~qliS~~adGliKlWnikt~eC~~tlD~---H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 559 GKQLISAGADGLIKLWNIKTNECEMTLDA---HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEeccCCCcEEEEeccchhhhhhhhh---ccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999999999999999999999988 899999999999999999999999999997554
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-31 Score=213.04 Aligned_cols=235 Identities=23% Similarity=0.365 Sum_probs=193.8
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEe
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 126 (288)
..+|-+....++.|+.=|.|+.|+| ++.++|+.+.||++.+||=.+++.+..+. +|.+.|.+++|+||++.|++++
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred eCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence 4456677778888999999999999 78999999999999999999999999998 8999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEe-------------------------------------------ccCCCCEEEEEEcCCCCE
Q 023018 127 LDGLVQIWDPSSGNLKCTL-------------------------------------------EGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~i~~~~~~~~~~~ 163 (288)
.|.+++|||+.+.+++.++ .+|...|+++..+|++++
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 9999999998776544332 567788999999999999
Q ss_pred EEEecCCCeEEEEECCcccEE-----------EEe---------------------------------------------
Q 023018 164 VLAGSEDSTVWMWNADRAAYL-----------NMF--------------------------------------------- 187 (288)
Q Consensus 164 l~~~~~dg~i~i~d~~~~~~~-----------~~~--------------------------------------------- 187 (288)
|++|+.||.|.-|+..++..- ..+
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 999999999999998654220 000
Q ss_pred -----------------ec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018 188 -----------------SG--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (288)
Q Consensus 188 -----------------~~--------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 242 (288)
+. ......+++++|++..+++|+.||.|+||.+..+....... ...|..+|+.+
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEE
Confidence 00 01234578899999999999999999999998655322211 11288999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeecc
Q 023018 243 TISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDF 286 (288)
Q Consensus 243 ~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df 286 (288)
+++|++.+|++|...+.+.+||+.+.+..... ..+.+++|+|+-
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 99999999999999999999999998774322 568899999873
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-33 Score=204.69 Aligned_cols=213 Identities=26% Similarity=0.402 Sum_probs=189.1
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLD 128 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 128 (288)
..++..|++.++.|...|.++.|++.....+++++.||+|++|+....+.+.++.+|...|...+|+|. .+.+++++.|
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 557778999999999999999999988889999999999999999999999999999999999999994 5689999999
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCE
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKT 205 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~ 205 (288)
|++++||++.......+..|...|.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|.-.|+.++||| ....
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999987665566888999999999998 6779999999999999999985 57888899999999999999 4567
Q ss_pred EEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 023018 206 ICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 265 (288)
|++++.|-+++|||...+. .+.+... |...+..+.|++ ++.++++++.|+.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~---HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDH---HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhc---cceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999987443 3333333 788899999998 7789999999999999984
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-32 Score=205.08 Aligned_cols=223 Identities=23% Similarity=0.369 Sum_probs=193.6
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------------------CeeeEeeccccCcEE
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVS 111 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~ 111 (288)
.+.+.-....+..|.+++.+.+|+| ++.++|+|+.|..|+|.|++. ...++++..|..+|+
T Consensus 98 ~e~~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn 176 (430)
T KOG0640|consen 98 PEPSEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN 176 (430)
T ss_pred CCCcccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc
Confidence 4455666778899999999999999 899999999999999999862 125667788999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--
Q 023018 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-- 187 (288)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 187 (288)
++.|+|....|++|+.|++|++||+......+.++ ....++.++.|+|.|.+|++|+...++++||+.+.++...-
T Consensus 177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999999997654333222 23457999999999999999999999999999988765443
Q ss_pred -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 188 -SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 188 -~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
..|...|+++.+++.++..++++.||.|++||--+++++.++.... ....|.+..|..+++++++.+.|..+++|.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 3588999999999999999999999999999999999988886542 35678999999999999999999999999999
Q ss_pred CCcEEEEe
Q 023018 267 TGKVCCLN 274 (288)
Q Consensus 267 t~~~~~~~ 274 (288)
||+++..+
T Consensus 336 t~R~l~~Y 343 (430)
T KOG0640|consen 336 TGRMLKEY 343 (430)
T ss_pred CCceEEEE
Confidence 99999987
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.8e-32 Score=208.11 Aligned_cols=218 Identities=23% Similarity=0.391 Sum_probs=200.5
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
-..++...++.||-..|..+++++ ...++++++.|+.|+.||+...+.++.+.+|-..|.|++.+|.-+.|++|+.|.+
T Consensus 180 latg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst 258 (460)
T KOG0285|consen 180 LATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST 258 (460)
T ss_pred cccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce
Confidence 355778889999999999999999 6778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
++|||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++.+.++..|+..+++++.+|....+++++
T Consensus 259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999988899988
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.| .|+-|++..|..+..+.+ |...|++++...|+ ++++|+..|.|.+||.++|-..+..
T Consensus 339 ~d-nik~w~~p~g~f~~nlsg---h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSG---HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred Cc-cceeccCCccchhhcccc---ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 76 489999999988777766 78889999988775 6789999999999999998655543
No 47
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-30 Score=196.39 Aligned_cols=230 Identities=24% Similarity=0.365 Sum_probs=192.6
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----------------------------------
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW----------------------------------- 99 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------------------------------- 99 (288)
++.+.++.-.+.|+++.|++ ++.++++++.|-.++|||..+++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 45566666788999999999 788888899999999999866543
Q ss_pred ---------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC
Q 023018 100 ---------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170 (288)
Q Consensus 100 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 170 (288)
++.+.+|...|++++.+|-+..+++++.|++|++||++..+....+.....+ .++|.|.|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence 3344789999999999999999999999999999999988877777655443 47999999999999988
Q ss_pred CeEEEEECCcc--cEEEEee---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc
Q 023018 171 STVWMWNADRA--AYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS 245 (288)
Q Consensus 171 g~i~i~d~~~~--~~~~~~~---~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (288)
..|++||+|.. .+..++. ......+.|.|+|+|++|+.++..+.+++.|.-+|.....+..++....-....+|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 89999999874 3444443 336678999999999999999999999999999999988888765444334677899
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeeccc
Q 023018 246 ADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDFV 287 (288)
Q Consensus 246 ~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df~ 287 (288)
|+++++++|+.||+|.+|++.+|+.+..+ ....++.|+|.|.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 99999999999999999999999999887 3467888888764
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-31 Score=196.48 Aligned_cols=205 Identities=24% Similarity=0.420 Sum_probs=176.5
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (288)
.+|+..|..++|+| .+++||+++.|.++.||.-.. .+++.++.+|...|.|++|+++|.+||++++|..|-||.+..
T Consensus 58 ~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 47999999999999 788999999999999998765 367888999999999999999999999999999999999875
Q ss_pred C---ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC---cccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 139 G---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 139 ~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
+ .....++.|..-|..+.|||...+|++++.|.+|++|.-. ...+++++.+|...|.+++|+|.|..|++++.|
T Consensus 137 ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 137 DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 4 4667788999999999999999999999999999999866 346899999999999999999999999999999
Q ss_pred CeEEEEeCCCC-------ce------------------eEEEc---------------CCCccccCeEEEEEcCC-CCEE
Q 023018 213 ATLRVWNPKSG-------EN------------------IHVIR---------------GHPYHTEGLTCLTISAD-STLA 251 (288)
Q Consensus 213 g~i~i~d~~~~-------~~------------------~~~~~---------------~~~~~~~~v~~~~~~~~-~~~l 251 (288)
++++||-..+. +. ++.+. ....|...|+++.|.|. ..+|
T Consensus 217 ~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 217 GTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred cceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCce
Confidence 99999974321 10 11111 11236678999999994 6889
Q ss_pred EEEeCCCcEEEEEcC
Q 023018 252 LSGSKDGSVHMVNIT 266 (288)
Q Consensus 252 ~~~~~dg~i~iwd~~ 266 (288)
++|+.||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999875
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=227.47 Aligned_cols=219 Identities=22% Similarity=0.357 Sum_probs=196.3
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...+..|.+|.++|..++|+| .+.++++|+.|-.|++|++.+.+++.++.+|-.-|..+.|++...+|++++.|.+|+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred hhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 355677788999999999999 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----------------------------EE
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YL 184 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~ 184 (288)
|+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+..-+ ..
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 9999999999999999999999999999999999999999999974210 12
Q ss_pred EEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 185 ~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
+.+.+|...|.-++|+|.-..+++|+.|..|++|.+...+ ........+|...|.++-|+|...++++.++|+.|+|||
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 4556899999999999999999999999999999986543 333333334889999999999999999999999999999
Q ss_pred cCCCcEEEEe
Q 023018 265 ITTGKVCCLN 274 (288)
Q Consensus 265 ~~t~~~~~~~ 274 (288)
+...+.+.++
T Consensus 279 m~kRt~v~tf 288 (1202)
T KOG0292|consen 279 MTKRTSVQTF 288 (1202)
T ss_pred cccccceeee
Confidence 9998888877
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=219.01 Aligned_cols=207 Identities=20% Similarity=0.384 Sum_probs=182.9
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeE
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLV 131 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 131 (288)
....++++.||+.+|..++|++ .+..+.+++.|+.|++||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred Ccceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 3678899999999999999999 77788899999999999999999999987 55678999999998 689999999999
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--------------------------
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-------------------------- 185 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------------------- 185 (288)
+.||+++++.++.+..|-+.|..+.|-++|+.+++++.|++++||+.+.+-+++
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 999999999999999999999999999999999999999999999976542211
Q ss_pred --------------------Eeecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018 186 --------------------MFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (288)
Q Consensus 186 --------------------~~~~~--~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (288)
.+.+| .+....+.|||||.+|++|+.+|.+.+||.++.+.+..+.. |..++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEE
Confidence 11233 23456789999999999999999999999999888888877 788999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEE
Q 023018 244 ISA-DSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 244 ~~~-~~~~l~~~~~dg~i~iwd 264 (288)
|+| ....+++++.+|.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 999 457899999999999996
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.9e-31 Score=204.06 Aligned_cols=232 Identities=24% Similarity=0.418 Sum_probs=198.0
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCee----eEeeccccCcEEEEEEecCCCEEE
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLA 123 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~ 123 (288)
....++..+++.||.++|.+++|...+ ...|++++.|.++++|.++.+.. +....+|...|-++...+++..++
T Consensus 130 Wd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~ 209 (423)
T KOG0313|consen 130 WDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC 209 (423)
T ss_pred EecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEE
Confidence 346788899999999999999887523 23689999999999999987643 233458999999999999999999
Q ss_pred EEeCCCeEEEEeCCC-------------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 023018 124 SGGLDGLVQIWDPSS-------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (288)
Q Consensus 124 ~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 178 (288)
+|+.|..|.||+..+ +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence 999999999999321 224556788999999999998 679999999999999999
Q ss_pred CcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcC-CCCEEEEE
Q 023018 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSG 254 (288)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 254 (288)
.++..+..+. ....+.++.++|...+|++|+.|..|++||.+++.- ...+.+ |...|.++.|+| +...|++|
T Consensus 289 etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g---H~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 289 ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG---HKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec---chhhhhheecCCCCceEEEEE
Confidence 9999888877 456799999999999999999999999999998743 344444 888999999999 55778899
Q ss_pred eCCCcEEEEEcCCCc-EEEEecceEEEEEeecc
Q 023018 255 SKDGSVHMVNITTGK-VCCLNFQYTCVAYDLDF 286 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~-~~~~~~~~~~~~~~~df 286 (288)
+.|+++++||+++.+ ++..+.++..-+|+.||
T Consensus 365 S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW 397 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW 397 (423)
T ss_pred ecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence 999999999999988 89999888888888877
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-32 Score=207.93 Aligned_cols=211 Identities=25% Similarity=0.404 Sum_probs=190.6
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee--------ccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------QGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
.+..+.+-|..|+| ++++|++|+.||.|.+|++.+++..+.+ --+..+|.|+.|+.+...+|+|+.||.|+
T Consensus 210 Fg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 45667899999999 8999999999999999999998765543 23678999999999999999999999999
Q ss_pred EEeCCCCceeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 133 IWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 133 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
+|.+.+|.+++.|. .|...|+++.|+.++..+++++.|.++++.-+++|++++.+++|.+.|+...|+++|.++++++.
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999999999987 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
||+|++|+.++..++.++.... ...+|.++..-| +...++++...++|+|-++. |+.++.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence 9999999999999998887654 567888888888 56788888899999999986 6666665
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=225.71 Aligned_cols=212 Identities=18% Similarity=0.321 Sum_probs=177.7
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--------------------------------C------------
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G------------ 97 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~------------ 97 (288)
+|.++|+++.|++ ++++||+|+.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 7999999999999 899999999999999999855 0
Q ss_pred ----------------eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-C
Q 023018 98 ----------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-R 160 (288)
Q Consensus 98 ----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~ 160 (288)
++++.+.+|.+.|.++.|+.++ +|++++.|.+|++|++....++..|. |...|+|++|+| +
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 1334457899999999999764 89999999999999999999999887 888999999999 8
Q ss_pred CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-----Ccc
Q 023018 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-----PYH 235 (288)
Q Consensus 161 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~ 235 (288)
.++|++|+-||.|+||++...+.+.- .....-|++++|.|+|++.++|+.+|.+++|+....+........ ...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 88999999999999999987765544 444578999999999999999999999999999876654433221 111
Q ss_pred ccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecce
Q 023018 236 TEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQY 277 (288)
Q Consensus 236 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~ 277 (288)
...|+.+.|.| +...|++.+.|..|+|||+++.+++..+.++
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 23799999998 4455777789999999999888888877543
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9e-30 Score=232.12 Aligned_cols=203 Identities=23% Similarity=0.366 Sum_probs=179.7
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
...|.+++|+|..+.+||+++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 467999999986778999999999999999999999999999999999999997 7889999999999999999999888
Q ss_pred EEeccCCCCEEEEEEc-CCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 143 CTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|+.|++||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 887754 579999995 478999999999999999998765 567778899999999997 6789999999999999999
Q ss_pred CCC------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 221 KSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 221 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
+.+ ..+..+.+ |...+..++|+|++.+|++|+.||.|++|+...+.++
T Consensus 690 ~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 690 SMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred CCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 743 45566665 6788899999999999999999999999998776544
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-31 Score=210.75 Aligned_cols=220 Identities=28% Similarity=0.425 Sum_probs=189.8
Q ss_pred eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCC
Q 023018 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 138 (288)
+......|.++.|.. ++.++|+|...|.|+|+|+.+...+..+.+|..++..+.|+|++. .|++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 334567899999998 899999999999999999777667888999999999999999665 677888899999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
......+.+|...|++.+|+|. +.++++|+.||.|++||++.. ..+..+. |..+|..+.+.|.|..+++++ ...++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 9887789999999999999994 558999999999999999987 5566665 999999999999999999987 46799
Q ss_pred EEeCCCCcee-EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018 217 VWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD 285 (288)
Q Consensus 217 i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d 285 (288)
|||+.+|... ..+.. |...|+|+++..++..|++|+-||.|++||+.+-+.+... .++.+++.+|+
T Consensus 221 VWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred EEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 9999866543 33333 7889999999999999999999999999999988888766 56777777764
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.8e-31 Score=226.15 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=198.2
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (288)
.+...+..|..++|+| ....+.++-..|.|.+||++-+.++..|..|.++|..++|+|.+.+|++|+.|-.|++|+..+
T Consensus 4 kfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 4455677899999999 777888999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~ 218 (288)
.+++.++.+|-..|+.+.||+.-.+|++++.|.+|+||+..+++++..+++|...|+|..|+|....+++++.|.+||||
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCce-----------------------------eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 219 NPKSGEN-----------------------------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 219 d~~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
|+...+. ...+ .+|..+|+.++|+|.-.++++|+.|..|++|.+..-+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL---EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL---EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee---cccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 9853111 0122 2388999999999999999999999999999997654
Q ss_pred EEE------EecceEEEEEee
Q 023018 270 VCC------LNFQYTCVAYDL 284 (288)
Q Consensus 270 ~~~------~~~~~~~~~~~~ 284 (288)
.-. .+..++++.|.|
T Consensus 240 aWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred ceeehhhhcccCCcceEEecC
Confidence 333 235677777776
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.8e-30 Score=191.28 Aligned_cols=226 Identities=22% Similarity=0.323 Sum_probs=202.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
...+++|.+.|-.++|+|....++++++.|.+|++||++.+++...+....+.+. +.|+|+|.+++++..|..|.+.|.
T Consensus 57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDA 135 (313)
T ss_pred hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEe
Confidence 3456899999999999998999999999999999999999999998875555554 889999999999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
++.+.....+.. -.+.-++|+-.+.+++..+..|.|.|.....-+++..+++|.....||.|+|+|++|++|+.|..+.
T Consensus 136 r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 136 RTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred cccceeehhccc-ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 998877766533 3578889997778888777889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeeccc
Q 023018 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLDFV 287 (288)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~df~ 287 (288)
+||+...-+.+.+.. +..+|+.+.|+-+|++|+++++|..|-|-++.||..+..+ .+...++|.|..-
T Consensus 215 LWD~~ELiC~R~isR---ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 215 LWDVDELICERCISR---LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRP 285 (313)
T ss_pred ccChhHhhhheeecc---ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCc
Confidence 999998888888877 7889999999999999999999999999999999999877 5677888877643
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.1e-31 Score=205.89 Aligned_cols=234 Identities=23% Similarity=0.433 Sum_probs=186.3
Q ss_pred CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEE
Q 023018 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASG 125 (288)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 125 (288)
....|.+..+++..|++.|+-+.|++ ++++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 45577788899999999999999999 8999999999999999998654 4577888999999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee----------------
Q 023018 126 GLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS---------------- 188 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------- 188 (288)
+.+..+.+||..+|.....+... ...+.+++|.|+|..+++|+.|+++..||+... .+..+.
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC
Confidence 99999999999999988877643 567999999999999999999999999998532 111111
Q ss_pred --------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018 189 --------------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (288)
Q Consensus 189 --------------------------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 242 (288)
....+|++++.|.+++++++.-.+..+++||+.....++.+.++.....-|. -
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-S 445 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR-S 445 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE-e
Confidence 1234566666666666666666666777777776666666666543333333 3
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018 243 TISA-DSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 243 ~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d 285 (288)
+|.- +..++++|++|+.|+||+..+|+++..+ ..+.+++|+|.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 4543 5589999999999999999999999999 45677887774
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=2.5e-30 Score=204.50 Aligned_cols=215 Identities=21% Similarity=0.346 Sum_probs=192.9
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
+...++.+.+|.||+..|+.+.++| ....+++++.|..|+||.............|..+|+.+..+|.|.||++++.||
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence 3455677889999999999999999 788899999999999999998887788888999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 130 LVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
+..+.|++++..+..... ..-.+++.+|||+|.+|.+|+.||.++|||+.++..+..|.+|.++|..++|+.+|-+|+
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence 999999999998877654 233589999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
+++.|+.|++||+|..+...++... ....+.++.|.+.|.+|+.++.+=+|++++-.+
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred EEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 9999999999999988888877754 334799999999999999998877777776443
No 60
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-29 Score=204.06 Aligned_cols=217 Identities=24% Similarity=0.432 Sum_probs=192.7
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeC--C--
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGL--D-- 128 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d-- 128 (288)
....++.+|..+++-..|+| .+.++|+|...|.|+||+..... +..+++...++|.+++|+.++++|++.+. +
T Consensus 50 ~~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 34778899999999999999 78899999999999999987643 33456777899999999999998877753 2
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
|.+.+| .++...-.+.+|...|.++.|-|.-. .+++|+.|+.|.+|.-.-.+...+++.|...|.++.|+|+|.+++
T Consensus 129 g~~F~~--DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 129 GHVFLW--DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred eEEEEe--cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 345555 56677888999999999999999544 899999999999999877787888889999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+++.||++.+||-.+|+.+..+.....|.+.|.+++|+||+..+++++.|.+++|||+.++++++++
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 9999999999999999999999977779999999999999999999999999999999999999877
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.1e-29 Score=228.63 Aligned_cols=210 Identities=21% Similarity=0.338 Sum_probs=180.4
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCCEEEEEeCCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~ 132 (288)
.+.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.||.|+
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 45677888999999999999867889999999999999999998888888744 688999995 4688999999999999
Q ss_pred EEeCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc------ccEEEEeeccCCCeEEEEEcCCCCE
Q 023018 133 IWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------AAYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 133 i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
+||+++.+ .+..+.+|...|.++.|. ++..|++++.|++|++||++. ..++..+.+|...+.+++|+|++.+
T Consensus 644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 99998765 466778899999999997 678999999999999999974 3567888899999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcC----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRG----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
|++|+.|+.|++|+.....++..+.. ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus 723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999876544332210 0114456999999999999999999999999996
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3e-32 Score=210.17 Aligned_cols=204 Identities=25% Similarity=0.444 Sum_probs=182.4
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
....|+|+.+. ...+++|..|.+|+|||..+..++..+.+|.+.|.|+.|. .+.|++|+.|.+|++||..+++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 34679999985 3577899999999999999999999999999999999994 569999999999999999999999
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
.++-.|...|..+.|+ ..++++++.|.+|.+||+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999996 5699999999999999998764 446677999999999996 56999999999999999
Q ss_pred CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV 280 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~ 280 (288)
+.++..++++.+ |..+|-|+.+ .++++++|++|.+|++||+..|+++..+.++..+
T Consensus 347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL 402 (499)
T KOG0281|consen 347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 402 (499)
T ss_pred ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence 999999999988 7888888887 4889999999999999999999999998665433
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=190.80 Aligned_cols=212 Identities=22% Similarity=0.348 Sum_probs=177.3
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC--EEEEEeC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGL 127 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~ 127 (288)
....-.++..+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+... .|++|+.
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 344456788899999999999985 57999999999999999999998899989999999999998765 8999999
Q ss_pred CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-----------------
Q 023018 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----------------- 190 (288)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------- 190 (288)
||.|.+|+......+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.-......
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999766532222110
Q ss_pred ----------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE--cC
Q 023018 191 ----------------------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SA 246 (288)
Q Consensus 191 ----------------------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 246 (288)
...+.++.|. ++.+|++|..++.|.+||.....+...+.. |..+|-.+.+ .|
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA---HENRVKDIASYTNP 261 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec---chhheeeeEEEecC
Confidence 1113333333 456788888888999999888777777776 7888888874 35
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 023018 247 DSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 247 ~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
++.+|+++++||.|++||+...
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEEeccCceEEEEEcccc
Confidence 7789999999999999999876
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=217.05 Aligned_cols=216 Identities=26% Similarity=0.440 Sum_probs=194.5
Q ss_pred CCCCCCCeeE-eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 50 TEQPDDSTHI-FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 50 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
.......+.. +.||.+.|+++++.. .+.++++|+.|.++++||..++++...+.+|...|.++... ..++++|+.|
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D 310 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRD 310 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCC
Confidence 3345566666 899999999999987 78899999999999999999999999999999999998874 4478889999
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 208 (288)
.+|++|++.++..+..+.+|.++|+++..+ +.++++|+.|++|++|++.++++++.+.+|...|.++.+.+. .++++
T Consensus 311 ~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS 387 (537)
T ss_pred ceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe
Confidence 999999999999999999999999999997 789999999999999999999999999999999999988754 89999
Q ss_pred EeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018 209 GSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ 276 (288)
Q Consensus 209 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~ 276 (288)
|+.|+.|++||+++. +++.++.+ |..-+..+.+ .+++|++++.||.|++||..++++++++..
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~---h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQG---HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcC---Cccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 999999999999999 88888887 5566655544 577999999999999999999999999865
No 65
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.2e-28 Score=210.12 Aligned_cols=200 Identities=18% Similarity=0.302 Sum_probs=160.6
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee-------------EeeccccCcEEEEEEec-CCCEEEEEeCCCeE
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDGLV 131 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 131 (288)
.|.....++ ++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.||+|
T Consensus 22 ~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 344444555 4334455555566666664332211 23678999999999999 78899999999999
Q ss_pred EEEeCCCC-------ceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018 132 QIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (288)
Q Consensus 132 ~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~ 203 (288)
++||+.++ ..+..+.+|...|.+++|+|.+ ++|++++.|++|++||+++++.+..+..|...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 99999765 3466788899999999999975 699999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc-CeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCc
Q 023018 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-GLTCLTISADSTLALSGS----KDGSVHMVNITTGK 269 (288)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~t~~ 269 (288)
.+|++++.|+.|++||+++++.+..+..+ .. .+..+.|.+++..|++++ .|+.|++||+++..
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecC---CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999999999999999999988887763 33 345678899877777654 47899999998754
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-30 Score=216.81 Aligned_cols=213 Identities=19% Similarity=0.332 Sum_probs=182.5
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec-CCCEEEEEeCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD 128 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 128 (288)
.....+|++.|.||.+.|..|+|+. .++|++++.|.+|++|++....+++.|. |..-|+|++|+| |.+||++|+-|
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 4455789999999999999999996 4578899999999999999999999998 999999999999 67799999999
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--------cCCCeEEEEEc
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFT 200 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~ 200 (288)
|.|+||++...++..-...+ .-|++++|.|+|+..++|+.+|.+++|++...+....+.. ....|+.+.|.
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred cceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 99999999988876655544 6799999999999999999999999999988776654431 12379999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 201 p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
| +...+++.+.|..|||||.+...++..+.+...... -....|+.||++|++++.|..|++|++..
T Consensus 511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 8 445677788899999999988888888887653333 35668899999999999999999999844
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.9e-29 Score=186.49 Aligned_cols=213 Identities=20% Similarity=0.353 Sum_probs=184.8
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC----
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---- 127 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 127 (288)
..+..+-++.||+++|+|+.... +...+++|+.|.++++||+.+++.+..+. ...+|..+.|++.|++++.+..
T Consensus 40 ~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred cCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcC
Confidence 45677889999999999999998 78899999999999999999999999998 6789999999999998777643
Q ss_pred -CCeEEEEeCC-------CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEE
Q 023018 128 -DGLVQIWDPS-------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 128 -dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~ 198 (288)
.+.|.++|++ ...+...+..+.+.++..-|.|-+..|++|..+|.|.+||.+++ +.+.....|...|+.|.
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ 197 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc
Confidence 4789999998 44567778888899999999999999999999999999999998 45566678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-----------------------------------------------
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRG----------------------------------------------- 231 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------------------- 231 (288)
++|+..++++++.|.+-++||..+.+.++++..
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred ccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 999999999999999999999987655433221
Q ss_pred -----CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 232 -----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 232 -----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
...|-++|++++|+|+|+..++|+.||.|++.-+.
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 12377899999999999999999999999997654
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=198.24 Aligned_cols=222 Identities=21% Similarity=0.310 Sum_probs=200.4
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCC
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
+.+-+....+.-+..+|.|+.|+. +..++|+|+.||.|++|.+.++.++..+. .|...|+|+.|+.++..+++++.|.
T Consensus 250 DLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~ 328 (508)
T KOG0275|consen 250 DLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQ 328 (508)
T ss_pred hhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccc
Confidence 344444556667889999999999 88899999999999999999999999997 7999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCeEEEEEcC-CCCEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTP-DGKTI 206 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p-~~~~l 206 (288)
++++.-+.+|+.++.+++|.+.|+...|.++|..+++++.||+|++|+.++..++.+++. ...+|..+..-| +...+
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 999999999999999999999999999999999999999999999999999999988874 345788888877 66789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
++|...++|+|-++. |+.++.+....-..+...+++.+|.|.++++.+.|+.++.|.+.+|++-.++
T Consensus 409 iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 999999999999985 7888888766556667788899999999999999999999999999988877
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=8.9e-30 Score=202.34 Aligned_cols=214 Identities=22% Similarity=0.370 Sum_probs=181.7
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-------eeEeeccccCcEEEEEEecC-CCEEEE
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------WASEIQGHKDSVSSLAFSMD-GQLLAS 124 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~ 124 (288)
.-.|...|.||++.-++|+|++...-.+++++.|++|++||+.... +...+.+|...|..++|++. ..+|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 4466779999999899999999888899999999999999997532 45567899999999999985 457889
Q ss_pred EeCCCeEEEEeCC--CCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEc
Q 023018 125 GGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 125 ~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~ 200 (288)
++.|+.+.|||++ +.+......+|.+.+.|++|+| ++..||+|+.|++|++||+|+. +++.++.+|...|.++.|+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 9999999999999 5667777888999999999999 6678999999999999999985 5788999999999999999
Q ss_pred CC-CCEEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 023018 201 PD-GKTICTGSDDATLRVWNPKSGE-----------NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 201 p~-~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 266 (288)
|. ...|++++.|+.+.|||+..-. +...+..|.+|...|..+.|+|.. -.|++.+.|+.+.||.+.
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 94 5678999999999999986321 122334455589999999999965 456788899999999986
No 70
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.2e-28 Score=208.01 Aligned_cols=188 Identities=16% Similarity=0.251 Sum_probs=158.2
Q ss_pred EeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCc--------eeEEeccCCCCEE
Q 023018 83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVE 153 (288)
Q Consensus 83 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~ 153 (288)
|+.++.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999999888888889999999999999996 7899999999999999997642 2345778999999
Q ss_pred EEEEcCCCCE-EEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 023018 154 WVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (288)
Q Consensus 154 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 232 (288)
+++|+|++.. |++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5788999999999999998777775 5678999999999999999999999999999999988888774
Q ss_pred CccccCe-----EEEEEcCCCCEEEEEeCCC----cEEEEEcCC-CcEEEEe
Q 023018 233 PYHTEGL-----TCLTISADSTLALSGSKDG----SVHMVNITT-GKVCCLN 274 (288)
Q Consensus 233 ~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~iwd~~t-~~~~~~~ 274 (288)
...+ ....|++++.+|++++.++ .|+|||+++ ++++...
T Consensus 209 ---~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 209 ---DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred ---cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 4333 2334568888999887764 799999995 5666554
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.4e-29 Score=195.03 Aligned_cols=206 Identities=23% Similarity=0.432 Sum_probs=179.0
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-------------------------CeeeEeeccccC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------------------------GDWASEIQGHKD 108 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~~ 108 (288)
.+.++.-+||..+|-+++..+ ++..+++|+.|..|.||+..+ ..++..+.+|..
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 344455559999999999999 888999999999999999321 235667889999
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEE
Q 023018 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLN 185 (288)
Q Consensus 109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~ 185 (288)
+|.++.|++ ...+++++.|.+|+.||+.+++....+.+.. .+.++.++|..++|++|+.|..|++||.|++. ..+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 999999997 6689999999999999999999888887554 59999999999999999999999999999863 557
Q ss_pred EeeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 186 MFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 186 ~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
++.+|...|.++.|+|. ...|++++.|+++++||+|+.. ++..+.+ |...|.++.|.. +..|++|+.|.+|+|+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~~-~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWNE-GGLIVSGGADNKLRIF 415 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEeccC-CceEEeccCcceEEEe
Confidence 78899999999999994 5568999999999999999877 7888887 789999999985 6689999999999998
Q ss_pred EcC
Q 023018 264 NIT 266 (288)
Q Consensus 264 d~~ 266 (288)
.-.
T Consensus 416 ~~~ 418 (423)
T KOG0313|consen 416 KGS 418 (423)
T ss_pred ccc
Confidence 643
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=6.2e-29 Score=196.63 Aligned_cols=216 Identities=21% Similarity=0.369 Sum_probs=194.7
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (288)
..|+++...| ....+.+|+.|..+.++|....+.+..+.+|...|+.+.|+|+...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4688888888 467888999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
...|..+|+.+..+|.|.+|++++.||+..+.|++++..+...... .-.+++.+|+|||..|.+|..||.|+|||+.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999888776642 34589999999999999999999999999999
Q ss_pred CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEee
Q 023018 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDL 284 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~ 284 (288)
+..+..|.+ |.++|..++|+.+|.+|++++.|+.|++||++.-+..+++ +++..+.|.+
T Consensus 379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence 887777777 8999999999999999999999999999999998877766 3455555543
No 73
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7e-29 Score=197.90 Aligned_cols=215 Identities=23% Similarity=0.328 Sum_probs=186.7
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-----
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS----- 137 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----- 137 (288)
-.++|.|++-+| .+.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 457899999999 88899888899999999999999999999999999999999999999999999999999763
Q ss_pred ----CCceeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 138 ----SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 138 ----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
+-++++.+..|.-+|+.+...+. ..++++++.|.++++||+..+.++.++. ....+.+++..|-++.+++|+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 34677888999999999998774 3589999999999999999998888876 6678999999999999999999
Q ss_pred CCeEEEEeCCCCc----------------eeEEEcCCCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 212 DATLRVWNPKSGE----------------NIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 212 dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+|.|.+.++.... .+..+.+ |.. +|+|++++-||.+|++|+.||.|.|||+.+.+++++
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G---h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG---HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeecc---ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999988875432 2233334 555 899999999999999999999999999999999887
Q ss_pred ec----ceEEEEE
Q 023018 274 NF----QYTCVAY 282 (288)
Q Consensus 274 ~~----~~~~~~~ 282 (288)
+. +++.+.+
T Consensus 315 l~~~kgpVtnL~i 327 (476)
T KOG0646|consen 315 LQTSKGPVTNLQI 327 (476)
T ss_pred HhhhccccceeEe
Confidence 73 4555544
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=186.84 Aligned_cols=224 Identities=18% Similarity=0.314 Sum_probs=176.8
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-Ceee-EeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (288)
....+.|.+|+|+|....++++|+.||+|++|++.. +..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 345678999999998788898999999999999987 3333 33456899999999999999999999999999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCCCC--EEEEecCCCeEEEEECCcccEEEEeec---------------------------
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSG--------------------------- 189 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------- 189 (288)
++ ...+..|.++|..+.|-+... .|++|+.|++|++||+|+..++.++..
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 95 556677999999999988555 899999999999999998776554421
Q ss_pred --------------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCc------cccCeEEEEEcCC
Q 023018 190 --------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPY------HTEGLTCLTISAD 247 (288)
Q Consensus 190 --------------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~------~~~~v~~~~~~~~ 247 (288)
.+-.++|++..++.+..+.|+-.|.+.|..+..+ ..-.+++.|.. .-..|++++|+|.
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence 1234677787777777788888888888877665 33344444321 1346889999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018 248 STLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d 285 (288)
...|++++.||++.+||-.....++.. .++++..|+.+
T Consensus 263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence 889999999999999998877766664 55666666543
No 75
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.2e-28 Score=195.87 Aligned_cols=208 Identities=21% Similarity=0.392 Sum_probs=176.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------eeEeeccccCcEEEEEEecCCC-EEEEE
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDGQ-LLASG 125 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 125 (288)
+...--|.+.|+.+++.|++..++|+++..+.|+|||..+.. +-.++.+|...-+.++|++... .|+++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 334456999999999999999999999999999999986521 2236788988778999998655 79999
Q ss_pred eCCCeEEEEeCCCCc-------eeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECC--cccEEEEeeccCCCeE
Q 023018 126 GLDGLVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVT 195 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~ 195 (288)
+.|+.|++||+.... ....+.+|...|..++|++ ....|++++.|+.+.|||+| +.++.....+|.+++.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 999999999997543 3456788999999999999 55688999999999999999 5567777889999999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 023018 196 CGDFTP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 196 ~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t 267 (288)
|++|+| ++..||+|+.|++|++||+|+.. ++..+.+ |...|.++.|+|+ ..+|++++.|+.+.+||+..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 999999 66678999999999999999764 4555555 8899999999994 57889999999999999975
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=187.01 Aligned_cols=231 Identities=22% Similarity=0.377 Sum_probs=206.9
Q ss_pred CCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC
Q 023018 48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127 (288)
Q Consensus 48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 127 (288)
......+.=+-++.||.++|+...++. +....|+++.|-+-++||.-++..+..+. |+.-|.+++|+.+..+|++|+.
T Consensus 43 lr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ 120 (334)
T KOG0278|consen 43 LRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ 120 (334)
T ss_pred hccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch
Confidence 344456777899999999999999998 88889999999999999999999999997 9999999999999999999999
Q ss_pred CCeEEEEeCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
+..++|||++..+ +...+.+|.+.|..+-|....+.|++++.|++|++||.++++.++++. ...+|+++.++++|++|
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRIL 199 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEE
Confidence 9999999998764 556788999999999999988999999999999999999999999987 67899999999999888
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEE
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVA 281 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~ 281 (288)
.++. .+.|.+||..+..+++.+. -...|.+..++|+...+++|+.|+.++.||..||..+..+ .++.|+.
T Consensus 200 Tia~-gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr 274 (334)
T KOG0278|consen 200 TIAY-GSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR 274 (334)
T ss_pred EEec-CceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE
Confidence 7664 6789999999988888776 4567899999999999999999999999999999988875 6788999
Q ss_pred Eeecc
Q 023018 282 YDLDF 286 (288)
Q Consensus 282 ~~~df 286 (288)
|+||-
T Consensus 275 FSPdG 279 (334)
T KOG0278|consen 275 FSPDG 279 (334)
T ss_pred ECCCC
Confidence 99874
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-28 Score=195.31 Aligned_cols=208 Identities=23% Similarity=0.383 Sum_probs=183.9
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 132 (288)
..-+..+.+|+.+|..+.|+|++..++++|+.|+.+++||+.+......+.+|+..|.|.+|+|... .+++|+.||.|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 3456778899999999999999999999999999999999999887778999999999999999655 889999999999
Q ss_pred EEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 133 IWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
+||++.. ..+..+. |..+|..+.+-|.|..|++++. ..|++||+-+| +.+..+..|...|+|+++..++..|++++
T Consensus 180 l~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 9999987 5555555 8889999999999999999887 78999999855 55555555999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|..+|.+.+=+...
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cccceEEEEccceEEEEeee----cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 99999999988888888877 678999999999999999999999888764433
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.2e-29 Score=183.58 Aligned_cols=213 Identities=25% Similarity=0.415 Sum_probs=185.5
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
...+..++.|. |..-|.+++|+. +..+|++|+.+..++||+++.. .+...+.+|.+.|..+.|....+.|++++.|+
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 34455555553 788899999998 7788889999999999999874 45667889999999999999888999999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
+|++||.+++..++++.. ..+++++.++++|++|.++.. +.|.+||..+..+++.++ ....|.+..++|+...+++|
T Consensus 166 tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred ceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-CccccccccccCCCceEEec
Confidence 999999999999998874 457999999999987766654 889999999998888877 45678999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEE-cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 210 SDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
+.|..++.||..++..+..+ .+ |.++|.|+.|+|+|...++|+.||+|++|.+..++..
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkg---h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKG---HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CcceEEEEEeccCCceeeecccC---CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999988775 44 8899999999999999999999999999999877654
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.5e-28 Score=211.54 Aligned_cols=230 Identities=22% Similarity=0.315 Sum_probs=198.6
Q ss_pred CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------------------CeeeEeeccccCcEEEEE
Q 023018 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA 114 (288)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~~~ 114 (288)
-.+.+..+..|.+.|+|+.|+| ++.+||+|+.|+.|.||.... .+.+..+.+|...|..++
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred cchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 4677788899999999999999 899999999999999999872 135677889999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc----
Q 023018 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH---- 190 (288)
Q Consensus 115 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 190 (288)
|+|++.+|++++.|++|.||+..+.+.+..+.+|.+.|..+.|.|-|++||+-+.|++|++|.+.+....+.+..+
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999998776666666543
Q ss_pred --CCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----CC----------
Q 023018 191 --GSSVTCGDFTPDGKTICTGSD----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----ST---------- 249 (288)
Q Consensus 191 --~~~i~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~---------- 249 (288)
...++.+.|+|||.+|++... -..+.|.+..+.+.-..+-+ |..++.++.|+|. ..
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG---H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG---HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec---CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 346789999999999988642 33688888877776667777 7789999999981 12
Q ss_pred --EEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeecc
Q 023018 250 --LALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDF 286 (288)
Q Consensus 250 --~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df 286 (288)
.+++|+.|+.|.||.....+++... ..+..+.|+||-
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG 337 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG 337 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC
Confidence 6788999999999999999988876 567788888774
No 80
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=190.79 Aligned_cols=209 Identities=19% Similarity=0.317 Sum_probs=169.5
Q ss_pred CeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccC----------------CeeeEeeccccCcEEEEEEecC
Q 023018 56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFSMD 118 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~i~~~~~~~~ 118 (288)
.....-+|.+.+..+.-.+. +..+.|+-+..|.|+||++.. .+++.++.+|...=+.++|+|-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 33445567778888887775 456777788899999999843 3567788899999999999993
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeE---EeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCccc--EEEEeeccC
Q 023018 119 G-QLLASGGLDGLVQIWDPSSGNLKC---TLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHG 191 (288)
Q Consensus 119 ~-~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~ 191 (288)
. ..|++|..-+.|++|...++.... .|.+|...|-.++|+|. ...|++|+.||+|+|||+|.+. .....+.|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 2 258888888899999988875432 35568899999999994 4589999999999999999872 223337899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 023018 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t 267 (288)
+.|+.|.|+....+|++|+.||+++|||+++- +++..+.- |..+|+++.|+| +...|++++.|.+|.+||+..
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999998889999999999999999864 44555554 899999999999 457788889999999999964
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=194.14 Aligned_cols=210 Identities=23% Similarity=0.406 Sum_probs=174.7
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
-+..+++.+|..+|.-+.|+| +.++|++|+.+..+.+||..++.....+.. +...+.+.+|.|||..+++|+.|+.|.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 566889999999999999999 677888888889999999999998877763 457889999999999999999999999
Q ss_pred EEeCCCCc----------------------eeEEe-------------------ccCCCCEEEEEEcCCCCEEEEecCCC
Q 023018 133 IWDPSSGN----------------------LKCTL-------------------EGPGGGVEWVSWHPRGHIVLAGSEDS 171 (288)
Q Consensus 133 i~d~~~~~----------------------~~~~~-------------------~~~~~~i~~~~~~~~~~~l~~~~~dg 171 (288)
.||+.... .+... .....+|++++.+.+++++++--.+.
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence 99975421 11000 01235688888888888888888888
Q ss_pred eEEEEECCcccEEEEeeccCCC--eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-C
Q 023018 172 TVWMWNADRAAYLNMFSGHGSS--VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-D 247 (288)
Q Consensus 172 ~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 247 (288)
.+.+||++..+.++.+.+|+.. +..-+|-- +..++++|+.|+.|+||+..+++++..+.+ |...|++++|+| +
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG---Hs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG---HSKTVNCVSWNPAD 494 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC---CcceeeEEecCCCC
Confidence 8999999888888888888754 33445654 457899999999999999999999999998 789999999999 6
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 023018 248 STLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 248 ~~~l~~~~~dg~i~iwd~~t 267 (288)
..++|+++.||+|+||-...
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 78899999999999998764
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=194.07 Aligned_cols=226 Identities=22% Similarity=0.338 Sum_probs=195.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
....+|.|..++|+.+.|.+ .+..+++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 36778888889999999999 67777788999999999999999999999999999999998776679999999999999
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
|+....+..++- +.+.+..|..+ ...+++|-.|+.|++||.++..+......+. .|+++..++++..|.+++.|.+
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 999877766654 33456677765 5678899999999999999999998888655 8999999999999999999999
Q ss_pred EEEEeCCCCceeEEEcCCCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEEeec
Q 023018 215 LRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAYDLD 285 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~~~d 285 (288)
+.+.|+++.+...++....+ .....+.+.|||++.|+++|+.||.|+||++.++++.+.+ ..+.+++|+|.
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 99999999888777765332 2344788999999999999999999999999999999988 24777777764
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-29 Score=206.76 Aligned_cols=212 Identities=20% Similarity=0.429 Sum_probs=185.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCe------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--c
Q 023018 69 SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG--N 140 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~ 140 (288)
.+..+..++++|++|+.||.|++|++.... .+..+..|...|+++....+++.|++++.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 555666678899999999999999986532 36678889999999999999999999999999999999877 5
Q ss_pred eeEEeccCCCCEEEEEE-cCCCCEEEEecCCCeEEEEECCccc--EEEE--------ee-ccCCCeEEEEEcCCCCEEEE
Q 023018 141 LKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAA--YLNM--------FS-GHGSSVTCGDFTPDGKTICT 208 (288)
Q Consensus 141 ~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~--------~~-~~~~~i~~~~~~p~~~~l~~ 208 (288)
....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++. .+.. +. ++..+|++++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 66778889999999999 7788899999999999999998762 2222 22 67889999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEe
Q 023018 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYD 283 (288)
Q Consensus 209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~ 283 (288)
|+..+.|++||.++++.+..+.+ |...|..+..++||..++++++||+|++||+...+++.++..+...+|+
T Consensus 189 Ggtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred cCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 99999999999999999999987 8899999999999999999999999999999999999998666555554
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-28 Score=198.51 Aligned_cols=220 Identities=24% Similarity=0.393 Sum_probs=193.1
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (288)
....+...|+++.|++ ++.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|+ ...+.+|+.+|.|..+|++
T Consensus 212 l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred eEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 3334478999999999 889999999999999999999999999998 99999999997 6689999999999999999
Q ss_pred CCceeEE-eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEe--CCC
Q 023018 138 SGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGS--DDA 213 (288)
Q Consensus 138 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~--~dg 213 (288)
..+.... +.+|...|..++|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+|+ .|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 8876555 788999999999999999999999999999999988889999999999999999999 667888865 589
Q ss_pred eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEEcCCCcEEEEecc----eEEEEEeec
Q 023018 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS--GSKDGSVHMVNITTGKVCCLNFQ----YTCVAYDLD 285 (288)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~t~~~~~~~~~----~~~~~~~~d 285 (288)
.|++||..++..+..+. ....|.+|.|++..+-|++ |..++.|.||+..+.+++..+.+ +..++++||
T Consensus 369 ~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 99999999999888877 5688999999998765655 44578999999999999888844 445555655
No 85
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.2e-30 Score=214.65 Aligned_cols=226 Identities=25% Similarity=0.461 Sum_probs=208.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
.+.+..|+..|.++..-. ..+.+++|+.|..+-+|.+...-.+..+.+|..+|.++.|++...+|++|+.+|+|++||+
T Consensus 21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 356667899999999844 7789999999999999999887777789999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
..++.++.+.+|...+.++.|+|-+.+++.|+.|+.+++||.+...+.+.+.+|...+..+.|+|+|++++.++.|..++
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF 286 (288)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df 286 (288)
|||+..|+....|.. |...+..+.|+|..-+++.|+.|++|++||+.|.+.+... .++.+..|+++-
T Consensus 180 i~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred eeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence 999999998888887 7888999999999999999999999999999998887765 678888888763
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=177.80 Aligned_cols=222 Identities=21% Similarity=0.349 Sum_probs=193.2
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--eccccCcEEEEEEecC-CCEEEEEeCCCeEEEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIW 134 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~ 134 (288)
+.+++|...|.+++|+- ++..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|. ...|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 66789999999999999 889999999999999999987755443 4679989999999974 4589999999999999
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
|++.+++..........+ -+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....+.-++|+-++.+++.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999998887655544 58999999999999999999999999988777665 4566788899988888888787899
Q ss_pred EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d 285 (288)
|.|......+++..+.. |.....|+.|+|+|+++++|+.|-.+.+||+...-+++.+ .+++.+.||.|
T Consensus 171 v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred EEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 99999988888888887 7788999999999999999999999999999887666655 78888888865
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=189.36 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=183.1
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (288)
++|...|.+++.++ ++++||+|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++....
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 48999999999999 89999999999999999999999999999999999999999888899999999999999999999
Q ss_pred eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
.+.++.+|.+.|..|.....++.+-+|+.|+++++|++.. .....+.++.+.+-|++|-. ...+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 9999999999999999988888888888999999999943 34456778888999999985 478999999999999999
Q ss_pred CCCceeEEEcCCCc---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 221 KSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 221 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
...+++.+...... +...|++++..|...++++|+.+|.|++|-+..|
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 98888766543211 1237899999999999999999999999999888
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.4e-28 Score=201.79 Aligned_cols=206 Identities=26% Similarity=0.420 Sum_probs=186.2
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----Ceee--------EeeccccCcEEEEEEecCCCEEEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWA--------SEIQGHKDSVSSLAFSMDGQLLAS 124 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~ 124 (288)
-..++|.+.|+.++.+| ++..+++|+.|.+|++|++.- +... .++. -...|.|+.++|++++|++
T Consensus 448 Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEE
Confidence 34457999999999999 778889999999999999742 1111 1122 4578999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~ 204 (288)
+--|.+++||-+.+.+....+.+|.-||.|+..+|+++.++||+.|..|++|-+.=|.+-+.+.+|...|+++.|.|...
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
.+++++.|+.|+-||-.....++.+.+ |...|++++.+|+|.++++++.|..|++|.-..-
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~---H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQKLDG---HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEEecCcceEEeechhhhhhheeecc---chheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 999999999999999988888888888 7788999999999999999999999999996653
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=202.56 Aligned_cols=214 Identities=27% Similarity=0.501 Sum_probs=192.9
Q ss_pred eEeec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 58 ~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
..+.+ |...+.+..|+. ..+++++.+.+|++|+..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||
T Consensus 201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 44443 567788888873 4788999999999999999998888 999999999999987678999999999999999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
..++.+...+.+|.+.+.++... ...+++|+.|.+|++|++.++..+..+.+|..+|+++.++ +.++++|+.|++|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 99999999999999999998875 4578889999999999999999999999999999999997 8899999999999
Q ss_pred EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEecceEEEEE
Q 023018 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLNFQYTCVAY 282 (288)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~~~~~~~~~ 282 (288)
++||+.+++.++.+.+ |...|.++.+.+. ..+++|+.|+.|++||+.++ +++.++..+..++.
T Consensus 354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~ 417 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS 417 (537)
T ss_pred EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence 9999999999999998 8899999988765 79999999999999999999 99998877766653
No 90
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=180.33 Aligned_cols=210 Identities=23% Similarity=0.403 Sum_probs=187.7
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
-..++.+..+++|.+-|..+.-+..+..++.+++.||++++||+++...++++. ..-.++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 356788889999999999999666678899999999999999999988888876 5678999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----cEEEEeeccC----CCeEEEEEcCC
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHG----SSVTCGDFTPD 202 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~----~~i~~~~~~p~ 202 (288)
|++||++.+.....+.+|..+|+.+..+|+|.++++-+.|.++++||++-. +++..+.+|. ......+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 999999999999999999999999999999999999999999999999853 4567776543 23467789999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
+.++.+|+.|..+++||......+..+++ |...|.++.|+|...+|.+++.|.+|++=.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpG---h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPG---HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCC---cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999988888888888 889999999999999999999999998743
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-29 Score=209.03 Aligned_cols=199 Identities=20% Similarity=0.355 Sum_probs=171.6
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL 141 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 141 (288)
.+..+.|+....++|||++..|.|.+||+.. .+.+..|..|...++++.|++.. .+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4567888877789999999999999999987 56667888999999999999854 4889999999999999999998
Q ss_pred eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
..++.+....|+.++|+| .+..|+++...|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888888888899999999 6779999999999999999986 56778889999999999999999999999999999999
Q ss_pred CCCCce--eEEEcCCCccccCeEEEEEcCCCC-EEEEEeC--CCcEEEEEcCCC
Q 023018 220 PKSGEN--IHVIRGHPYHTEGLTCLTISADST-LALSGSK--DGSVHMVNITTG 268 (288)
Q Consensus 220 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--dg~i~iwd~~t~ 268 (288)
..+... ..++. ...+|.++.|.|... .|++++. |-.|+|||++..
T Consensus 249 ~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 976543 33333 567899999999654 4555543 778999999864
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=176.85 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=173.7
Q ss_pred CCCCCeeEeecCCCCEEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEecC--CCEEEEEe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMD--GQLLASGG 126 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~ 126 (288)
.+.+++..|.||++||+.++|. |.-+.+||+++.||.|.||.-.+++. ......|...|++++|.|. |-.|++++
T Consensus 44 ~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 44 GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee
Confidence 3457889999999999999985 55678999999999999999988754 3456679999999999985 45899999
Q ss_pred CCCeEEEEeCCCC---ceeEEeccCCCCEEEEEEcCC---C-----------CEEEEecCCCeEEEEECCcc--cEEEEe
Q 023018 127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPR---G-----------HIVLAGSEDSTVWMWNADRA--AYLNMF 187 (288)
Q Consensus 127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~--~~~~~~ 187 (288)
.||.|.|.+.+.. ........|.-.+++++|.|. | +.|++|+.|..|+||+..++ ..-.++
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 9999999988754 223345678889999999985 4 57999999999999998775 344568
Q ss_pred eccCCCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 188 ~~~~~~i~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
.+|...|+.++|.|.- .+|++++.||++.||-...-...............+..+.|++.|++|++++.|+.|.+|
T Consensus 204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 8999999999999943 469999999999999765221111111111145779999999999999999999999999
Q ss_pred EcCC
Q 023018 264 NITT 267 (288)
Q Consensus 264 d~~t 267 (288)
.-..
T Consensus 284 ke~~ 287 (299)
T KOG1332|consen 284 KENV 287 (299)
T ss_pred EeCC
Confidence 7543
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=181.73 Aligned_cols=210 Identities=19% Similarity=0.334 Sum_probs=172.3
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
-..+++|-.|.++|+++.|+| ...+|++|+.|++|+++|+......+.++ ....+|.++.|+|.|.+|++|..-.++
T Consensus 162 hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred CceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 356788999999999999999 78899999999999999997643322222 245689999999999999999999999
Q ss_pred EEEeCCCCceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccC-CCeEEEEEcCCCCEE
Q 023018 132 QIWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHG-SSVTCGDFTPDGKTI 206 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~i~~~~~~p~~~~l 206 (288)
++||+.+.+...... +|.+.|+++.+++.+++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+++++
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 999999987655433 578899999999999999999999999999999999998875 344 478999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCC----------------------------------------------ccccCeE
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHP----------------------------------------------YHTEGLT 240 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------------------------------~~~~~v~ 240 (288)
++++.|..+++|.+.++..+....+.. .|.+.++
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 999999999999999988776554331 1555566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 241 CLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 241 ~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
.+.-+|.+..+.+|+.|-.+++|-
T Consensus 401 ~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred EEEeCCCCCceeeecccceeeeee
Confidence 666666666666666666666664
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2.1e-27 Score=179.73 Aligned_cols=213 Identities=20% Similarity=0.365 Sum_probs=178.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------eeEe-----eccccCcEEEEEEec-CCC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASE-----IQGHKDSVSSLAFSM-DGQ 120 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~i~~~~~~~-~~~ 120 (288)
....+.|.+.|.++...+..++++++|+.||.|.+||++... .+.. -.+|+-.|.++.|-| +..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 345567999999999999999999999999999999997643 1111 135788899999999 455
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC---CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE
Q 023018 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (288)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 197 (288)
.|.+++.|.++++||..+.+....|+- .+.|.+-+|+| ..-++|+|..+-.|++.|+.+|..-+.+.+|...|.++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 888999999999999999988888774 45699999998 34478888999999999999999999999999999999
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEeCCCC-ceeEEEcC-----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 198 DFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRG-----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 198 ~~~p~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
.|+|...+ |++|+.||.|++||++.. .++..+.. ...|.+.+..++|..++.++++++.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99997665 789999999999999854 33333322 234777899999999999999999999999999
Q ss_pred cCCCcE
Q 023018 265 ITTGKV 270 (288)
Q Consensus 265 ~~t~~~ 270 (288)
..+|+-
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 988753
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-27 Score=195.37 Aligned_cols=209 Identities=25% Similarity=0.440 Sum_probs=185.0
Q ss_pred CCCCeeEeec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 53 PDDSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 53 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
..+.+..+.+ |...|-+++|+ ...+.+|+.+|.|..+|++..+.... +.+|...|..++|++++.+||+|+.|+.
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred hccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence 3455566667 99999999997 46888999999999999998766555 8889999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
+.|||.....+...+..|.+.|.+++|+| ...+||+|+ .|+.|++||+.++..+..+. ..+.|..|.|++..+.|+
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL 403 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence 99999988889999999999999999999 667888875 58999999999999888876 567899999999887776
Q ss_pred EE--eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 208 TG--SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 208 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
++ ..++.|.||+..+.+++..+.+ |...|..++++|+|..+++|+.|.++++|++-..
T Consensus 404 sthG~s~n~i~lw~~ps~~~~~~l~g---H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 404 STHGYSENQITLWKYPSMKLVAELLG---HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EecCCCCCcEEEEeccccceeeeecC---CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 64 4567899999999888888887 8889999999999999999999999999999764
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=188.73 Aligned_cols=227 Identities=18% Similarity=0.294 Sum_probs=185.1
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+....+..++..|.+.|..+++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 3456677999999999999995558899999999999999999999999999999999999976 56788888888888
Q ss_pred EeCCC--------------------------------------CceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEE
Q 023018 134 WDPSS--------------------------------------GNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVW 174 (288)
Q Consensus 134 ~d~~~--------------------------------------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~ 174 (288)
|-+.. ..++..+.-....|.++.|+|.. .+|++|+.|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 86322 11222333334568889999944 4777888999999
Q ss_pred EEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (288)
Q Consensus 175 i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (288)
+||+++..+++.+. ....-..|+|+|.+-.+++|+.|..++.||++... ..+..+..|...|..+.|+|.|+-+++|
T Consensus 214 LyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred EEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhccc
Confidence 99999999887765 34566889999988789999999999999998654 3344444589999999999999999999
Q ss_pred eCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018 255 SKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD 285 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d 285 (288)
+.|.+|+||.++.+...-.+ +.+.|+.||+|
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence 99999999999988765544 67888888876
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=180.05 Aligned_cols=229 Identities=21% Similarity=0.406 Sum_probs=196.5
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc------cC-----------------------------
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI------NQ----------------------------- 96 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~------~~----------------------------- 96 (288)
....++..+.||.+.|.+++|++ .+.++++++.|++-.||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred ccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 55788999999999999999999 8889999999999999983 11
Q ss_pred -----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC
Q 023018 97 -----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (288)
Q Consensus 97 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 171 (288)
..++..+.+|.+.|.+..|...|+.+++++.|.+..+||+.++.++..+.+|....+.++-+|..+++++++.|-
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence 014566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCC
Q 023018 172 TVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADST 249 (288)
Q Consensus 172 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (288)
+.++||++.. ..+..|++|...|+++.|..+ ..+++|+.|.+|+|||+++.. ++.++. ...+++.++.+..+.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHP 411 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCc
Confidence 9999999854 567889999999999999864 678999999999999998764 556666 567899999998888
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018 250 LALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF 286 (288)
Q Consensus 250 ~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df 286 (288)
+++.--.+..|++||+...++.... .++..++-+..|
T Consensus 412 iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence 8888888899999999876655443 455544444444
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8.8e-29 Score=206.80 Aligned_cols=203 Identities=25% Similarity=0.428 Sum_probs=186.6
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
....++..|.+|..+|.++.|++ ...+|++|+.+|+|++||+...+.++++.+|...+..+.|+|-+.+++.|+.|+.+
T Consensus 58 ~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 58 GKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL 136 (825)
T ss_pred cCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccc
Confidence 33445556999999999999999 88899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
++||++...+.+.+.+|...+..+.|+|+|++++.++.|..++|||+..|+.+..|..|.+.+..+.|+|..-.+++|+.
T Consensus 137 ~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 137 KIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred eehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (288)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 258 (288)
|+++++||+++-+.+..... ....|.++.|+|++..+++|....
T Consensus 217 d~tv~f~dletfe~I~s~~~---~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKP---ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CceeeeeccceeEEeeccCC---ccCCceeeeecCCceeeecCchhh
Confidence 99999999997776655544 567899999999999988886543
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=182.86 Aligned_cols=211 Identities=25% Similarity=0.456 Sum_probs=185.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
..++.|.||.+.|+.++... ...++.+++.|.+-+||.++++.++..+.+|.+.|++++|++.+.++++++.|++.+||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 45567789999999999887 66699999999999999999999999999999999999999999999999999999999
Q ss_pred eC------CC----------------------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018 135 DP------SS----------------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (288)
Q Consensus 135 d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 174 (288)
.. .. .-++..+.+|.+.|.+..|-..|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 61 11 013445678889999999999999999999999999
Q ss_pred EEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (288)
Q Consensus 175 i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (288)
+||++++.++..+.+|....+.++-+|..+++++++.|.+.++||++. .+..+...++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999999999999999999999999999984 333333444489999999999764 56899
Q ss_pred eCCCcEEEEEcCCCc
Q 023018 255 SKDGSVHMVNITTGK 269 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~ 269 (288)
+.|.+|++||+++.+
T Consensus 375 SDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR 389 (481)
T ss_pred CCCceEEEeeecccc
Confidence 999999999998754
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.2e-27 Score=193.21 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=165.0
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEeec-----cccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQ-----GHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
+||...++|-+|+|.....++|++.||+++||++...+ .+..+. +..-+++.++|++++++||+|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 47999999999999888999999999999999998643 233332 234578899999999999999999999999
Q ss_pred eCCCCcee---EEeccCCC--CEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccC--CCeEEEEEcCCCCEE
Q 023018 135 DPSSGNLK---CTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHG--SSVTCGDFTPDGKTI 206 (288)
Q Consensus 135 d~~~~~~~---~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~i~~~~~~p~~~~l 206 (288)
+....... ..-..|.. .|++|.|+++|++|++-+.|+++++||+++. +++....+.. .+-+.++|||+.++|
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence 97544322 22234555 8999999999999999999999999999986 4555554432 345778999999999
Q ss_pred EEEe------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 207 CTGS------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 207 ~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
++|+ ..|.+.+||..+...+..+.. ....|..+.|+|.-+.|++|+.||.+++|==.
T Consensus 425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 9986 356899999999988888876 46778999999988888999999999987433
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-25 Score=161.77 Aligned_cols=229 Identities=18% Similarity=0.318 Sum_probs=181.7
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-----------e----eeEeeccccCcEEEEEEecC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------D----WASEIQGHKDSVSSLAFSMD 118 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~----~~~~~~~~~~~i~~~~~~~~ 118 (288)
-..+.++. .+..|.+++|+| .+.+.|+|+...+++|--+... + ..+.-+.|.+.|+|.+|+|.
T Consensus 23 f~~i~~l~-dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred eEEEEEec-chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34444554 456899999999 7788899999999988765421 1 11223458899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-----eeEEeccCCCCEEEEEEcC----CCCEEEEec-CCCeEEEEECCcccEEEEee
Q 023018 119 GQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSWHP----RGHIVLAGS-EDSTVWMWNADRAAYLNMFS 188 (288)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 188 (288)
|.+|++|+.|.+|++..+.... .-..|.-|.+.|+.++|.. .+.+|++++ .|..|++-|..+++..+.+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 9999999999999998665432 2335677999999999965 344666654 46778888999999999999
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 189 ~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
+|.+.|.++ ++-++-.+++|+.|.+|++||++-...+.++.... .....|.+++..|.|++|++|-.|....+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 999999876 44468899999999999999999887777664321 1336799999999999999999999999999
Q ss_pred cCCCcEEEEe----cceEEEEEeec
Q 023018 265 ITTGKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 265 ~~t~~~~~~~----~~~~~~~~~~d 285 (288)
++.|+.++.+ ..++++.|+|.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCC
Confidence 9999999988 45677888763
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2e-26 Score=193.63 Aligned_cols=225 Identities=21% Similarity=0.303 Sum_probs=196.0
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
.++++++. .+-+.+..|.| +.+++++|...|.+.+||+.+...+.+++.|.+.|++++.+|++..+++|+.|.+|++
T Consensus 404 ~kciRTi~--~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf 480 (888)
T KOG0306|consen 404 LKCIRTIT--CGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF 480 (888)
T ss_pred cceeEEec--cccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence 44444444 34788999999 8889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-----Ccee--------EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEc
Q 023018 134 WDPSS-----GNLK--------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 134 ~d~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 200 (288)
||..- +... .++. -...|.|+.+||++++|+++--|.++++|-+.+.+....+-+|.-||.||..+
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 99631 1111 1122 23569999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc----
Q 023018 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ---- 276 (288)
Q Consensus 201 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~---- 276 (288)
|++..++||+.|..|+||-+.=|.+-+.+.. |...|.++.|.|....+++++.|+.|+.||-...+.+.++.+
T Consensus 560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred CCcCeEEeccCCCceEEeccccchhhhhhhc---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 9999999999999999999998988888877 889999999999999999999999999999999999988844
Q ss_pred eEEEEEeec
Q 023018 277 YTCVAYDLD 285 (288)
Q Consensus 277 ~~~~~~~~d 285 (288)
+.|++.+|+
T Consensus 637 v~cLav~~~ 645 (888)
T KOG0306|consen 637 VWCLAVSPN 645 (888)
T ss_pred eeeeEEcCC
Confidence 455555554
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.4e-26 Score=174.78 Aligned_cols=217 Identities=18% Similarity=0.313 Sum_probs=173.6
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
....|..+.|+| ....|++++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 356799999998 44555567799999999999887666676 999999999986 457899999999999999988754
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
. +..|..++.++.+.+....+++|+.|++|++||.+.......+.. ...|.++... ++.|++|+.+..+.+||+++
T Consensus 89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred e-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 4 456889999999999888999999999999999998666665553 3478887664 78899999999999999986
Q ss_pred Ccee---------------E---------------------------------EEcCCC------ccccCeEEEEEcCCC
Q 023018 223 GENI---------------H---------------------------------VIRGHP------YHTEGLTCLTISADS 248 (288)
Q Consensus 223 ~~~~---------------~---------------------------------~~~~~~------~~~~~v~~~~~~~~~ 248 (288)
.... . .+..|. ....+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 4211 1 111110 012478999999988
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018 249 TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF 286 (288)
Q Consensus 249 ~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df 286 (288)
..|++|+.||.|.+||+.+.|.++.+ ..+..++|+.+-
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence 89999999999999999999988877 236677777664
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-27 Score=175.64 Aligned_cols=227 Identities=22% Similarity=0.331 Sum_probs=184.3
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~ 132 (288)
.+-..|.+.|..+...- .+..|||++.|++|+|+..+.. +++.++.+|.+||..++|.. .|.+||+++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 45567999999888876 7889999999999999999864 56788999999999999965 788999999999999
Q ss_pred EEeCCCCce--eEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCC---
Q 023018 133 IWDPSSGNL--KCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPD--- 202 (288)
Q Consensus 133 i~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~--- 202 (288)
||.-.+++- ......|.+.+++++|.|. |-.|++++.||.|.|++.+.. ...+....|.-.+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887743 3445678999999999994 568999999999999988764 233455679999999999995
Q ss_pred C-----------CEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 023018 203 G-----------KTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVNI 265 (288)
Q Consensus 203 ~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~ 265 (288)
| +.|++|+.|..|+||+..+++ .-.++.+ |...|+.++|.|.- ..|++++.||++.||..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 4 569999999999999988763 2233444 88999999999942 57999999999999987
Q ss_pred CCC---cEEEEecceEEEEEeecccC
Q 023018 266 TTG---KVCCLNFQYTCVAYDLDFVL 288 (288)
Q Consensus 266 ~t~---~~~~~~~~~~~~~~~~df~~ 288 (288)
..- .....+..+.+++|...|+|
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred cCccCcccccccccCCcceEEEEEec
Confidence 631 12233466777788777765
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.6e-26 Score=172.19 Aligned_cols=208 Identities=22% Similarity=0.356 Sum_probs=174.3
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
..++.++.+.||...|..|+.+| .+..+++++.|++|++||++..++...+.....+ .++|.|.|-++|++.....|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeE
Confidence 34688899999999999999999 6688899999999999999987777777644444 47899999999999888899
Q ss_pred EEEeCCCC--ceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCe---EEEEEcCCC
Q 023018 132 QIWDPSSG--NLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV---TCGDFTPDG 203 (288)
Q Consensus 132 ~i~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i---~~~~~~p~~ 203 (288)
++||++.. .+...+. ......+.+.|+|+|+.|+.++..+.+++.|.-+|..+.++..+...- ...+|+|++
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999864 3334443 335678999999999999999999999999999999888887655432 567899999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
+++++|+.||+|.+|+++++..+..+.+. +..++.++.|.|.-.++++++ ..+.+|=..
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999999999999999999999999875 678899999999876666654 568888554
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.5e-26 Score=201.48 Aligned_cols=224 Identities=28% Similarity=0.383 Sum_probs=189.7
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccC------------CeeeEeeccccCcEEEEEEecCCCEEEEEeC
Q 023018 62 GHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 127 (288)
.+...|.++..+| ++..+|||+ .||.++||+... .+.+.....|.+.|+|+.|+|+|++||+|+.
T Consensus 11 H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 3456799999999 889999999 899999999753 2345667789999999999999999999999
Q ss_pred CCeEEEEeCCC------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec
Q 023018 128 DGLVQIWDPSS------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (288)
Q Consensus 128 dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 189 (288)
|+.|.||.... .+....+.+|.+.|..++|+|++.++++++.|++|.+|+.++.+.+.++.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 135667889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeC----CCcEEE
Q 023018 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK----DGSVHM 262 (288)
Q Consensus 190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----dg~i~i 262 (288)
|.+.|-.+.|.|-|+||++-+.|++|+||++.+....+.+..+-. ....+..+.|+|||.+|++... -..+.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 999999999999999999999999999999877666666654321 3345788999999999998643 346888
Q ss_pred EEcCCCcEEEEe----cceEEEEEeecc
Q 023018 263 VNITTGKVCCLN----FQYTCVAYDLDF 286 (288)
Q Consensus 263 wd~~t~~~~~~~----~~~~~~~~~~df 286 (288)
.+-.+-+.-..+ .+.+++.|+|.+
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHH
Confidence 877666655555 678889998865
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-28 Score=202.25 Aligned_cols=216 Identities=20% Similarity=0.325 Sum_probs=180.7
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 130 (288)
..++.+..|..|...|+++.|++....+|++|+.||+|++||++..+...++.+....|.+++|+|. +.+|+++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 4567788999999999999999999999999999999999999999888899888999999999984 568999999999
Q ss_pred EEEEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCCCCE-E
Q 023018 131 VQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKT-I 206 (288)
Q Consensus 131 i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~-l 206 (288)
+.+||++.. +....+..|.+++.++.|+|++.+||+|+.|+.|+||++.+++ .+.++. ...++.+++|-|...+ |
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHL 279 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchh
Confidence 999999876 4556678899999999999999999999999999999998654 334443 4578999999996655 6
Q ss_pred EEEe--CCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 207 CTGS--DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 207 ~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
++++ .|-.|+|||++..-. ..++.. |...++.++|.. +...|.+++.||.|..-.++++...
T Consensus 280 Atcsmv~dtsV~VWDvrRPYIP~~t~~e---H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDVRRPYIPYATFLE---HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred hhhhccccceEEEEeeccccccceeeec---cCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 6665 377899999985433 344444 788899999976 5567889999999887766665433
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=194.97 Aligned_cols=210 Identities=25% Similarity=0.435 Sum_probs=189.3
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEE-ecCCCEEEEEeCCCeEE
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAF-SMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~ 132 (288)
.+..+..|++-|..++... +++.|++++.|-+|++|+.... -+..++..|...|.|+++ .++..++|+|+-|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 4778889999999999887 7778889999999999999876 567778899999999999 67788999999999999
Q ss_pred EEeCCCC--ceeEE--------ec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018 133 IWDPSSG--NLKCT--------LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (288)
Q Consensus 133 i~d~~~~--~~~~~--------~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p 201 (288)
+||+.++ +.+.. +. ++..+|++++.++.|..|++|+..+.+++||.++.+.+..+++|...|+++..++
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 9999977 22222 22 6777899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+|..+++++.||+|++||+....++.++.. |...|+++..+|+-..+++|+.||.|+.=|+++..
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEe---ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 999999999999999999998888888877 77889999999999999999999999999999843
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=163.33 Aligned_cols=206 Identities=24% Similarity=0.393 Sum_probs=175.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----eEeeccccCcEEEEEEecC----CCEEEEEe-
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMD----GQLLASGG- 126 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~- 126 (288)
.+.-+.|.+.|+|.+|+| .+.++|+|+.|.+|++..+..... -..+.-|.+.|..++|-.+ +..|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 344567899999999999 889999999999999987764322 2346668999999999642 44666664
Q ss_pred CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-------cCCCeEEEEE
Q 023018 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-------HGSSVTCGDF 199 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~ 199 (288)
.|..|++-|..+++..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++.. ..+.|.+++.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 57788888999999999999999988876 333688999999999999999998888877642 2367899999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 200 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.|.|++|++|-.|....+||++.+..++.+.. |...|+++.|+|...+|++++.|..|++-|++.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999999999999999999999999888876 888999999999999999999999999999874
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.8e-26 Score=181.52 Aligned_cols=212 Identities=27% Similarity=0.435 Sum_probs=186.8
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee----Ee-------------e-ccccCcEEEEEEecC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE-------------I-QGHKDSVSSLAFSMD 118 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~-------------~-~~~~~~i~~~~~~~~ 118 (288)
...+..|.-+|++++++| +..++++++.+|+|.-|++.+++.. .+ - ..|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 678889999999999999 7788899999999999999876532 11 1 267888999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (288)
++|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|...|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999998
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
-...++.+-+|+.|+++++|++..- ....+.+ +...+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg---~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRG---GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-ceeeeeC---CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888888889999999999543 3334444 6778999998864 56789999999999999999999887
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=8.4e-26 Score=188.30 Aligned_cols=204 Identities=23% Similarity=0.390 Sum_probs=178.5
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
......|..+|+||+..|.|++... ++. +++|+.|.++++|... ++...+.+|...|++++.-|.+ .+++|+.|.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 4466789999999999999999776 454 7899999999999874 5566799999999999999988 789999999
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
+|++|.- ++.+.+|.+|...|+.+++-+++ .|++++.||.|++|++ ++..+..+.+|...+++++..++++.++++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 9999964 78899999999999999999754 6889999999999999 788999999999999999988888999999
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
+.|++++||+.. .+.+.+.. ....|+++.+-++|.+ ++|++||.||||.....
T Consensus 238 gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 238 GEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCCE-EEeccCceEEEEEeccc
Confidence 999999999876 66677764 3457899998888875 67889999999998743
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-25 Score=190.52 Aligned_cols=218 Identities=20% Similarity=0.312 Sum_probs=188.0
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
+...|.+++... ..|++|+.+++|.+|.+..++.-..+....-++.+++|+.+|+++|.|+.|-.|++.++.+....
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE 131 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence 778899998754 48899999999999999998877677777889999999999999999999999999999999999
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--------cCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
..+++|.++|.++.|+|++++||+.+.||.|++|++.++.+..++.+ ....+..++|+|++..|++.+.|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 99999999999999999999999999999999999998876665542 1456788999999888888889999
Q ss_pred EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEee
Q 023018 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDL 284 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~ 284 (288)
|.+|+..++.....+.... +...+..+.|+|.|.+|++++.+|.|.|||+.+-..-.....+.+.+|-|
T Consensus 212 Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKP 280 (933)
T ss_pred EEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCC
Confidence 9999999998888877543 34449999999999999999999999999999754433335566666654
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-25 Score=169.14 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=175.4
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe------------------------------------
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------------------------------------ 98 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------------------ 98 (288)
-.+..|++|.+.|++++|+. ++..||+++.|+.|++|+++...
T Consensus 77 l~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 34567899999999999999 89999999999999999985421
Q ss_pred eeEee-----------------------ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEE
Q 023018 99 WASEI-----------------------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155 (288)
Q Consensus 99 ~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 155 (288)
.+..+ ..|...+..+-....+.+|++++.|..|.+|++. |+.+..+......-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 01111 1233444455555567799999999999999998 88888888777778888
Q ss_pred EEcCCCCEEEEecCCCeEEEEECC---cc-----cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C
Q 023018 156 SWHPRGHIVLAGSEDSTVWMWNAD---RA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS----G 223 (288)
Q Consensus 156 ~~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~----~ 223 (288)
+.+|+|+++++++....|++|.+- .| ..+..+++|.+.|..++|+|+...+++.+.||+++|||+.- +
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 999999999999999999999862 22 34567789999999999999999999999999999999752 2
Q ss_pred ceeEEEcCC----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018 224 ENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD 285 (288)
Q Consensus 224 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d 285 (288)
+-.+.+... .........+.++|.|+.|+.+ ....+++|..++|+..-.+ ..+.+++|+++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 222222111 0112333489999999998765 4568999999999877665 56788888874
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=174.68 Aligned_cols=212 Identities=22% Similarity=0.437 Sum_probs=169.1
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE---eeccccCcEEEEEEecCCC-EEEEE
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDGQ-LLASG 125 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~-~l~~~ 125 (288)
.....+|+.++.+|...=++|+|+|.....|++|.--+.|++|...++.... .+.+|...|-.++|+|..+ .|++|
T Consensus 197 ~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 197 KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence 3467889999999999999999999666668888888999999998876543 3567999999999999654 89999
Q ss_pred eCCCeEEEEeCCCCce--eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---ccEEEEeeccCCCeEEEEEc
Q 023018 126 GLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~ 200 (288)
+.||+|+|||++.+.. ....+.|.+-|+.|.|+....+||+|+.||+++|||+|+ ++++..|+.|..+|+++.|+
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 9999999999998832 223477999999999999888999999999999999986 46889999999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCc----------------eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 023018 201 P-DGKTICTGSDDATLRVWNPKSGE----------------NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHM 262 (288)
Q Consensus 201 p-~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 262 (288)
| +...|++++.|.+|.+||+..-. +.+.+..|. ....+.-+.|++. ..+|++.+.|| +.|
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnV 434 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNV 434 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeE
Confidence 9 45668888999999999985311 111222221 2345677889984 45677777777 444
Q ss_pred E
Q 023018 263 V 263 (288)
Q Consensus 263 w 263 (288)
|
T Consensus 435 f 435 (440)
T KOG0302|consen 435 F 435 (440)
T ss_pred E
Confidence 4
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-26 Score=181.41 Aligned_cols=212 Identities=20% Similarity=0.338 Sum_probs=172.7
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG 139 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 139 (288)
.+|+++|..++|+..-..+||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 47999999999999788999999999999999999999999999999999999999964 58999999999999999853
Q ss_pred ceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 023018 140 NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLR 216 (288)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~ 216 (288)
......-...+.|-.++|.|. ...+++++.||+++-+|+|+. +++.++++|..+|.++++++. ...|++++.++.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 322222224567999999994 457888889999999999986 899999999999999999984 55689999999999
Q ss_pred EEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+|++...... ....+...-+...|.++.|+- -+|+.|+..+.++|||+.+...+..
T Consensus 400 lw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 400 LWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 9998754332 222222233446677777754 5677888888999999998776544
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=170.07 Aligned_cols=221 Identities=14% Similarity=0.242 Sum_probs=175.5
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
-|....+++.... ..|+.|++ .+.+||+|..+|.|.|||+.+......+.+|..+|++++|+++|++|++++.|..|
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred ChHhhceeccCCc--cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 3444555555333 78999999 88999999999999999999999888999999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeccCC----------------------------------------------CCEEEEEEcCCCCEEE
Q 023018 132 QIWDPSSGNLKCTLEGPG----------------------------------------------GGVEWVSWHPRGHIVL 165 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~----------------------------------------------~~i~~~~~~~~~~~l~ 165 (288)
.+||+..|.+++.++-.. ....+..|.+.|++++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999999887766543110 0112234667788999
Q ss_pred EecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------e---EEEcCCCcc
Q 023018 166 AGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------I---HVIRGHPYH 235 (288)
Q Consensus 166 ~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~------~---~~~~~~~~~ 235 (288)
+|+..|.+.+++..+.+++..++... ..|..+.++..|++|+.-+.|..||.|+++.--. + +.+... ..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VN 248 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VN 248 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hh
Confidence 99999999999999999998887655 7899999999999999999999999999862110 0 111100 02
Q ss_pred ccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEecc
Q 023018 236 TEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVCCLNFQ 276 (288)
Q Consensus 236 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~~~~~~~ 276 (288)
..+-.+++|+.+|.++++++. ...++||.-..|.+++.+.+
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 234567899999999988764 45799999999999998833
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.9e-25 Score=185.15 Aligned_cols=219 Identities=25% Similarity=0.415 Sum_probs=187.7
Q ss_pred CCeeEeecCCCCEEE-EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 55 DSTHIFSGHSDEVYS-VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...+.+.+|.+-|.+ +++-+.++-.+++|+.|+++.+|.+....+...+.+|...|.+++...++. +++|+.|.++++
T Consensus 48 l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv 126 (745)
T KOG0301|consen 48 LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV 126 (745)
T ss_pred ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEE
Confidence 344667778887777 888775556788999999999999999999999999999999999887776 999999999999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
|.. +++...+.+|...|++++.-|.+ .+++|+.|.+|++|.- ++.+++|.+|...|+.+++.|+ ..+++++.||
T Consensus 127 W~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg 200 (745)
T KOG0301|consen 127 WRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDG 200 (745)
T ss_pred ecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCc
Confidence 965 45566689999999999999977 9999999999999974 7889999999999999999976 4578899999
Q ss_pred eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286 (288)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df 286 (288)
.|+.|++ +|..+..+.+ |...+.++....++..++++++|++++||+.. .+.+.+.-+....|+..+
T Consensus 201 ~Ir~w~~-~ge~l~~~~g---htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHG---HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred eEEEEec-cCceeeeeec---cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 9999999 6788888877 78889999988888899999999999999977 667766555555565544
No 118
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=179.30 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=171.0
Q ss_pred CCeeEeecCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCC-CEEEEEeCC
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLD 128 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 128 (288)
......+-|.++|++++|+|... .++|+|..-|.|-+||+.+. .-+..+..|.++|.++.|+|.. ..+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 34456677899999999999766 89999999999999999532 3455677899999999999954 488999999
Q ss_pred CeEEEEeCCCCceeEE--eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-EEEeeccCCCeEEEEEcC-CCC
Q 023018 129 GLVQIWDPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGK 204 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~p-~~~ 204 (288)
|+|++-|+..+..... +......+..+.|+.+...++++..=|...+||++++.. ...+..|...|+.++++| ...
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999987754333 333556788889988888888887778999999998754 666777889999999999 556
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 205 TICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
+|++++.|++.+|||++....... +-..-.|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 789999999999999986543321 11122288999999999977669999999999999983
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=181.30 Aligned_cols=231 Identities=22% Similarity=0.334 Sum_probs=202.9
Q ss_pred CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (288)
....|......+..|.+.|..+.|-+ +...|++|+.|..|++|+....+ .+.++.+..++|+++.|.++++++++++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred hcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 45577778888999999999999999 77789999999999999998765 6777888889999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++||+....+.+++. ..+.+..|..+ ...+
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~ 315 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDV 315 (459)
T ss_pred CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceee
Confidence 99999999999999999999999999999999876679999999999999999988777765 34556666665 5568
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--------cceE
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--------FQYT 278 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--------~~~~ 278 (288)
++|..|+.|++||.++..+...+.. .+.|+++..++++..|++++.|.++.+.|+++......+ ...+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 8999999999999999999888874 458999999999999999999999999999999888776 3456
Q ss_pred EEEEeeccc
Q 023018 279 CVAYDLDFV 287 (288)
Q Consensus 279 ~~~~~~df~ 287 (288)
.++|||+-.
T Consensus 392 rvvfSpd~~ 400 (459)
T KOG0288|consen 392 RVVFSPDGS 400 (459)
T ss_pred eeEECCCCc
Confidence 788888743
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.3e-24 Score=161.90 Aligned_cols=226 Identities=27% Similarity=0.389 Sum_probs=174.9
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC---CCEEEEEeCCCeEEEEe
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWD 135 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d 135 (288)
.-.+|.-.|..+.|-|.+..++.+++.|.++++||..+.+....|+ ..+.|++-+++|- .-++|+|..+-.|++.|
T Consensus 96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 4457888999999999988899999999999999999998888887 6788999999984 34788999999999999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcc-cEEEE--------------eeccCCCeEEEEE
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNM--------------FSGHGSSVTCGDF 199 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~i~~~~~ 199 (288)
+.+|...+.+.+|...|.++.|+|... .|++|+.||.|++||++.. .+... -..|.+.+..++|
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence 999999999999999999999999766 6788999999999999864 22222 2357788999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--
Q 023018 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-- 274 (288)
Q Consensus 200 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-- 274 (288)
+.++.++++++.|..+++|+..+|.....-.+...+.. .-..+. +-+...++.--.++.+.++++-.|..+..+
T Consensus 255 tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 255 TSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred cccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 99999999999999999999988754222111111111 111122 223334444445577888888888777766
Q ss_pred --cceEEEEEeecc
Q 023018 275 --FQYTCVAYDLDF 286 (288)
Q Consensus 275 --~~~~~~~~~~df 286 (288)
..+.|.+|.|+|
T Consensus 334 h~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 334 HLKRINCAAYRPDF 347 (397)
T ss_pred ccceeeEEeecCch
Confidence 556777777776
No 121
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.93 E-value=2.1e-24 Score=169.40 Aligned_cols=217 Identities=22% Similarity=0.383 Sum_probs=176.7
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCCC-EEEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQ-LLASG 125 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 125 (288)
......+.||+++|..++|+|.+...+|+|+.|.+|.||.+..+ +++..+.+|...|.-++|+|... .|+++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 34456788999999999999999999999999999999999764 45677889999999999999654 78899
Q ss_pred eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEEEEcCCCC
Q 023018 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGK 204 (288)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~p~~~ 204 (288)
+.|.+|.+|++.+++.+..+. |...|.+++|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ ....+.|..++.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 999999999999999888888 999999999999999999999999999999999999988877765 345666888888
Q ss_pred EEEEEe---CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcEEE
Q 023018 205 TICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 205 ~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~t~~~~~ 272 (288)
.+-+|- .+.++-+||..+.+....+.... ....|.---|.++..+++ +|-.|+.|+.|.+..-.+..
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence 555543 46789999987654433222221 345566667788877766 45569999999998876443
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3.3e-25 Score=178.90 Aligned_cols=219 Identities=20% Similarity=0.358 Sum_probs=181.3
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
.|..-|.++..+. ..+.++||+. |.|+|||+... .++..+.. ...-|.++.+.|+|+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4777888888887 6788999987 88999999753 23333332 3567889999999999999999999999999
Q ss_pred CCCceeE--EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 137 SSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 137 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
....... .+....-.+.+++.+|+.+..++++.||.|.|||+++...++.|++|...+.||.++++|..|.+|+-|.+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 8765433 33333345788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV 287 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~ 287 (288)
||-||++++..+.... ....|.++.++|.+.+|++|-..+.+.+..... .....+..+.++++|..|.
T Consensus 575 vRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFA 642 (705)
T ss_pred eeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEec
Confidence 9999999987665544 567899999999999999999999999988654 4444556667777776664
No 123
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=173.16 Aligned_cols=200 Identities=22% Similarity=0.364 Sum_probs=161.4
Q ss_pred EEEEEcCC------CCcEEEEEeCCCeEEEEEccCCe---ee------------------EeeccccCcEEEEEEecCCC
Q 023018 68 YSVACSPT------DATLVATGGGDDKGFFWRINQGD---WA------------------SEIQGHKDSVSSLAFSMDGQ 120 (288)
Q Consensus 68 ~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~---~~------------------~~~~~~~~~i~~~~~~~~~~ 120 (288)
.|++|... .++++|.|+.+..|.|||+.-.. +. ....+|...|.+++|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666542 35799999999999999985210 00 11235888888999987544
Q ss_pred -EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018 121 -LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 121 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (288)
.||+|+.|.+|++||+.++++...+..|...|.++.|+| ....|++|+.|++|.+.|+|........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 899999999999999999999999999999999999999 566999999999999999996433322222567899999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcE
Q 023018 199 FTPD-GKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 199 ~~p~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
|.|. ...+++++.||.|+-+|+|+. +++.++.. |..+|.++++++ ...+|++++.|+.|++|++..-..
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---ccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 9994 456788889999999999975 77888877 888999999998 457889999999999999975433
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=167.56 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=180.9
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 140 (288)
.+.|+++.|+| ...++.+++.||+++||.+.. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46899999999 788999999999999999875 345666666678999999999999 89999999999999999887
Q ss_pred eeEE--eccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018 141 LKCT--LEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (288)
Q Consensus 141 ~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i 217 (288)
.... ..++ ...+.....++++++|+..+..|.|.+....++..+..++ ..+.|..++|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5443 2222 2357778889999999999999999999999999998887 5678999999999999999999999999
Q ss_pred EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEe----cceEEEEEeec
Q 023018 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t------~~~~~~~----~~~~~~~~~~d 285 (288)
||++...+++.+... ..-.-++++.++++.+|++|+..|.|.|||..+ .++++.+ ..++.+.|++|
T Consensus 371 ~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999888888642 122346678889999999999999999999654 3555554 56777777765
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-23 Score=174.71 Aligned_cols=233 Identities=21% Similarity=0.264 Sum_probs=192.5
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~ 130 (288)
..++.++.++++.+.|+++.=+| --..+|.|..+|+|.+++++.++.+.+++...+.|++++|..||. .+++|+..|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 45688899999999999999999 677999999999999999999999999984459999999999998 5667777799
Q ss_pred EEEEeCCCCceeEEec-----------------------------------------------cC---------------
Q 023018 131 VQIWDPSSGNLKCTLE-----------------------------------------------GP--------------- 148 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~-----------------------------------------------~~--------------- 148 (288)
+.+||+...+.+..+. +|
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999986533222110 00
Q ss_pred --------------------------------------------------------------------------------
Q 023018 149 -------------------------------------------------------------------------------- 148 (288)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (288)
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence
Q ss_pred -------------------CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEE
Q 023018 149 -------------------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 149 -------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l 206 (288)
...+++++.++.|++.+.|+..|.|-+|++++|-....+ ..|+.+|+.++...-++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 134677888888888999999999999999998877777 4799999999999888999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEE--------------------------------------cCCCccccCeEEEEEcCCC
Q 023018 207 CTGSDDATLRVWNPKSGENIHVI--------------------------------------RGHPYHTEGLTCLTISADS 248 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~~~~~ 248 (288)
++++.+|.+.+||..+...+..+ +...+|...|+.++|||||
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 99999999999998765432211 1112388899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018 249 TLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD 285 (288)
Q Consensus 249 ~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d 285 (288)
++|++++.|++|++||+.|+.++-.+ .+...+.|+|.
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 99999999999999999999998776 66777777764
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.9e-22 Score=164.52 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=164.1
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-eEEEE
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIW 134 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~ 134 (288)
....+..+.. +..++|+|.+..++++++.++.|++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+|
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 65 VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 3344444443 567899994444555566789999999998887777753 34468899999999999888765 56788
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEECCcccEEEEeeccC-------CCeEEEEEcCCCCEE
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDFTPDGKTI 206 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~l 206 (288)
|..+++....+... ..+.+++|+|++++++++ ..++.|++||+++++.+..+..+. .....++|+|+++++
T Consensus 143 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 143 DTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred eCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 99887766554433 346789999999988655 468999999999988776654221 123568899999986
Q ss_pred EEE-eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe---cceEEEE
Q 023018 207 CTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN---FQYTCVA 281 (288)
Q Consensus 207 ~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~---~~~~~~~ 281 (288)
+++ +.++.|.+||+.+++....+. +...+.+++|+|++.+|+++ +.+|.|++||+.+++++..+ ....+++
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeE
Confidence 554 456789999999887766554 34568899999999998876 46899999999999998877 4445555
Q ss_pred Ee
Q 023018 282 YD 283 (288)
Q Consensus 282 ~~ 283 (288)
++
T Consensus 298 ~~ 299 (300)
T TIGR03866 298 VR 299 (300)
T ss_pred eC
Confidence 54
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.1e-24 Score=173.97 Aligned_cols=215 Identities=15% Similarity=0.272 Sum_probs=179.4
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 145 (288)
.-.|++... -..++++|+..+.|+|||++...+.+.+.+|...|+++.++....|||+++..|.|.|..+.++.....|
T Consensus 81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred hHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 445565555 3468899999999999999977777888999999999999999999999999999999999999887777
Q ss_pred ccC-CCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEe-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 023018 146 EGP-GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK 221 (288)
Q Consensus 146 ~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~ 221 (288)
... ...++.+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..|...|+|+| +..+|++.+.|..|.+||++
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 755 34567999999766 5667889999999999887766554 46999999999999 55667899999999999999
Q ss_pred CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEe----cceEEEEEeec
Q 023018 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VCCLN----FQYTCVAYDLD 285 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~-~~~~~----~~~~~~~~~~d 285 (288)
.......+. ...+...++|.++|.+|++|...|.|..||++..+ +++++ ..+++++|.+.
T Consensus 240 s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 240 SQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 777666665 56789999999999999999999999999998654 45554 45777777654
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-23 Score=156.99 Aligned_cols=207 Identities=21% Similarity=0.323 Sum_probs=161.2
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~ 132 (288)
+-.+|.+-|+++.|.+ .|+.+|+|+.|++|+|||..+ ..+....+.|.+.|..+.|.+ -|+.+|+++.|+++.
T Consensus 8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 4468999999999999 889999999999999999754 345566778999999999965 588999999999999
Q ss_pred EEeCCC---------CceeEEeccCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcc------cEEEEee-------
Q 023018 133 IWDPSS---------GNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRA------AYLNMFS------- 188 (288)
Q Consensus 133 i~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~------- 188 (288)
||.-.. -....++....+.|+.+.|.| -|-.+|+++.||.++||+.... .+...++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997521 123445666778899999999 5679999999999999986543 2223333
Q ss_pred ccCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCC----CCEEEEEe
Q 023018 189 GHGSSVTCGDFTP---DGKTICTGSDD-----ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISAD----STLALSGS 255 (288)
Q Consensus 189 ~~~~~i~~~~~~p---~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~ 255 (288)
.+..+..|+.|+| ...+|++|+.+ +.+.||....+ .....+.....+..+|+.++|.|+ -.+|++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 3567788999998 45678888865 37888875433 244444444458999999999994 35789999
Q ss_pred CCCcEEEEEcCC
Q 023018 256 KDGSVHMVNITT 267 (288)
Q Consensus 256 ~dg~i~iwd~~t 267 (288)
.|| |+||.+..
T Consensus 247 kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 247 KDG-VRIFKVKV 257 (361)
T ss_pred cCc-EEEEEEee
Confidence 999 99999984
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.8e-25 Score=170.74 Aligned_cols=217 Identities=23% Similarity=0.340 Sum_probs=173.3
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---------------------------------
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------- 96 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------- 96 (288)
+-....+...+..|.+.|..|++.. ..+++++.|.+|+.|.+..
T Consensus 95 nlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~I 171 (433)
T KOG0268|consen 95 NLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDI 171 (433)
T ss_pred ehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeee
Confidence 3345677889999999999999975 4567888889898888432
Q ss_pred -----CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC
Q 023018 97 -----GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170 (288)
Q Consensus 97 -----~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 170 (288)
..++..+..-...|.++.|+|-.. .|++|+.|+.|.+||++++.+++.+.. ...-+.|+|+|.+-.+++|+.|
T Consensus 172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccc
Confidence 112233333345678888888544 677888999999999999988877653 3346789999988899999999
Q ss_pred CeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC
Q 023018 171 STVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (288)
Q Consensus 171 g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (288)
..++.||++.. .++..+++|.+.|..+.|+|.|+-+++|+.|.+|+||..+.+........ .....|.++.|+.|.+
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence 99999999975 67888999999999999999999999999999999999987654333221 1345799999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEE
Q 023018 250 LALSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 250 ~l~~~~~dg~i~iwd~~t~~~~~ 272 (288)
++++|+.|+.|++|...-.+.+.
T Consensus 329 yi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEEecCCCcceeeeecchhhhcC
Confidence 99999999999999976555443
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=7.5e-24 Score=180.04 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=180.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (288)
...+++++.++ .+++.+.|+..|.|-+|++++|-....+ +.|..+|+.++...-++.+++++.+|.+++||.....
T Consensus 448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred CcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 36799999999 8889999999999999999999988888 4799999999998888899999999999999999888
Q ss_pred eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
.+..++. ...+.++.++.....++++..|-.|+++|+.+.+.++.+.+|...|+.++|||+|++|++++.|++|++||+
T Consensus 527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 7777764 346889999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCC
Q 023018 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMVNITT 267 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~t 267 (288)
.++..+..+. ...++.++.|+|+|.+|++...| .-|++|.-.+
T Consensus 606 pt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 606 PTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999988887 56789999999999999999888 6799997543
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.4e-24 Score=179.05 Aligned_cols=225 Identities=17% Similarity=0.310 Sum_probs=191.4
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec---CCCEEEEEeCCCeEEEEeCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~ 137 (288)
-+..-.+.+++.+| ++++||+|..-|.|+||++...+....+..|...|.|+.|+. ..++||+++.|..|+|||+.
T Consensus 456 ~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 34456799999999 899999999999999999999999899999999999999984 34589999999999999986
Q ss_pred CC-ceeEEeccCCCCEEEEEEcCCC--CEEEEecCCCeEEEEECCcccEEEEee-----ccCCCeEEEEEcCCCCEEEEE
Q 023018 138 SG-NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 138 ~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~ 209 (288)
.. .++.++.+|.+.|+++.|..+| ..+++++.|..|.+--.+.......+. ..+..++.|+..|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 54 6777889999999999999877 689999998887764333211111121 234578999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df 286 (288)
+.|..|+||++.+|+..+.|++...+.+....+...|.|.+|++.+.|.++.++|+.+|++++..++|..++....|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence 99999999999999999999998888888999999999999999999999999999999999999776655555544
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=167.36 Aligned_cols=222 Identities=22% Similarity=0.352 Sum_probs=177.2
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
.+.--..+|+++||+. ..+.||.+-.+|.|.||++...-. ...+.+ ....|.+++|++. ..|++.+.+|.|.-||+
T Consensus 20 f~d~~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEeeeccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEec
Confidence 3344467899999999 667799999999999999987533 233444 3568999999954 46788888999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE--EEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
.++++...+....+.|++++.+|.+..++.|+.||.++.++...++.. ..+...++.+.+++|+|++..|+.|+.||.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999999999999999999999999999999998888888776543 334456789999999999999999999999
Q ss_pred EEEEeCCCCceeEEEcC----C-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018 215 LRVWNPKSGENIHVIRG----H-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD 283 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~ 283 (288)
|++||..+++.+..... . .....-|+++.+-.+ ..|++|.+-|.|.+||...|.++... ..+.+++-+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 99999999887762221 1 112334677777755 46789999999999999999988766 344444443
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.6e-21 Score=159.00 Aligned_cols=228 Identities=17% Similarity=0.154 Sum_probs=168.6
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 132 (288)
.+....+.+|.. +.+++|+|++..++++++.++.|++|+..+++....+..+.. +..++|+|+++.++++ +.++.|+
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence 345666666544 678999994444556778889999999999888777765443 4678999999977655 5689999
Q ss_pred EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-e
Q 023018 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-S 210 (288)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~ 210 (288)
+||+.+.+.+..+..+ ..+.+++|+|++.+++++..++ .+.+||.++++....+. ....+..++|+|++++|+++ .
T Consensus 99 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 99 VIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC
Confidence 9999988877766533 3468899999999999988765 56788998877665543 23456789999999988655 4
Q ss_pred CCCeEEEEeCCCCceeEEEcCCC--cc--ccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018 211 DDATLRVWNPKSGENIHVIRGHP--YH--TEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKVCCLN---FQYTCVAY 282 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~ 282 (288)
.++.|++||+.+++.+..+.... .+ ......++|+|+++++++ .+.++.|.+||+.+++.+..+ ..+.+++|
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence 68999999999987766554211 01 112356889999988655 455678999999999887654 44667777
Q ss_pred eec
Q 023018 283 DLD 285 (288)
Q Consensus 283 ~~d 285 (288)
+|+
T Consensus 257 ~~~ 259 (300)
T TIGR03866 257 TPD 259 (300)
T ss_pred CCC
Confidence 765
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=174.22 Aligned_cols=222 Identities=18% Similarity=0.245 Sum_probs=189.4
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (288)
-+|...-+.++|.| ++..|++++.||.|++|+.... ..-..+..+...|.+++. .+.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 36888899999999 7779999999999999998765 333444447777877776 4558999999999999999988
Q ss_pred ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
..-..+....-++++++++.+|+++|.|+.|-.|++.++........+++|..+|.++.|+|.+.+||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 76666666667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEcCCCcc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEEeec
Q 023018 220 PKSGENIHVIRGHPYH-----TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAYDLD 285 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~~~d 285 (288)
+.++....++.+.... ...+..++|+|++..|++.+.|+.|++|+..+......+ ..+..+.|+|.
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 9998877766554322 345678899999888888889999999999999888877 34778888875
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.5e-24 Score=172.35 Aligned_cols=205 Identities=19% Similarity=0.277 Sum_probs=177.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (288)
..-|.++.+.| +++.|++|+.-.+|.|||+....+ ...+....-.+++++.+||.+..++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 34688899999 788888999999999999986543 333444445678899999999999999999999999999999
Q ss_pred eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (288)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~ 221 (288)
++.|++|...+.||..+++|..|.+|+-|.+|+.||++.++.+.... ..+.|.++.++|.+.+|++|-.++.+-|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999998776654 56889999999999999999999999988875
Q ss_pred CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
..+ ...+.. |..-|.++.|.+-|+++++.+.|..+..|.+.-|..+...
T Consensus 623 kp~-kyqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 623 KPE-KYQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred Ccc-ceeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 443 334443 7889999999999999999999999999999888766654
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=165.99 Aligned_cols=190 Identities=22% Similarity=0.385 Sum_probs=164.6
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---------CeeeEeeccccCcEEEEEEecCC--C
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMDG--Q 120 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~~--~ 120 (288)
..+..+..+.+|=.+|+|+.|+- ++.+|++|+.||.|.+|.+.. -++.+.+..|.-+|+++...+.+ .
T Consensus 111 ssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 111 SSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred ccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence 44667777888999999999998 889999999999999999743 45778888999999999987653 4
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----------------cEE
Q 023018 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----------------AYL 184 (288)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~ 184 (288)
+|++++.|.++++||+..+.++..+..+ ..+.+++.+|-++.+++|+.+|.|.+.++.+. ..+
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~ 268 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI 268 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee
Confidence 8999999999999999999998887755 46999999999999999999999999886432 245
Q ss_pred EEeeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018 185 NMFSGHGS--SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 185 ~~~~~~~~--~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (288)
..+.+|.. +|+|++++-||..|++|+.||.++|||+.+.++++++.. ..++|+.+.+.|
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNLQINP 329 (476)
T ss_pred eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hccccceeEeec
Confidence 66778887 999999999999999999999999999999999888875 467888888866
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.5e-22 Score=153.94 Aligned_cols=192 Identities=22% Similarity=0.340 Sum_probs=154.1
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC--EEEEEeCCCeEEEEe
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQIWD 135 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d 135 (288)
+....|.++|.+++|+. ++..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+... .|++|+.|.+|+.||
T Consensus 66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 44566899999999998 77899999999999999999995 456666999999999987554 899999999999999
Q ss_pred CCCCceeEEeccC-----------------------------------------CCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018 136 PSSGNLKCTLEGP-----------------------------------------GGGVEWVSWHPRGHIVLAGSEDSTVW 174 (288)
Q Consensus 136 ~~~~~~~~~~~~~-----------------------------------------~~~i~~~~~~~~~~~l~~~~~dg~i~ 174 (288)
.+...++.++.-+ .-.++|++..++....+.|+-.|.+.
T Consensus 144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 9876655543211 12467888888777778888889888
Q ss_pred EEECCcc--cEEEEeeccC---------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018 175 MWNADRA--AYLNMFSGHG---------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (288)
Q Consensus 175 i~d~~~~--~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (288)
+..+..+ +.-..|+.|. ..|.+|+|+|.-..|++++.||++.+||-.....+..... +..+|++++
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---HPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc---CCCccceeE
Confidence 8887765 3333444443 2578899999889999999999999999876666655554 889999999
Q ss_pred EcCCCCEEEEE
Q 023018 244 ISADSTLALSG 254 (288)
Q Consensus 244 ~~~~~~~l~~~ 254 (288)
|+.+|.+++-+
T Consensus 301 fn~~G~ifaYA 311 (347)
T KOG0647|consen 301 FNRNGSIFAYA 311 (347)
T ss_pred ecCCCCEEEEE
Confidence 99999988754
No 138
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.4e-23 Score=169.26 Aligned_cols=216 Identities=21% Similarity=0.365 Sum_probs=180.9
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--------CeeeEeeccccCcEEEEEEecCCCEEEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASG 125 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 125 (288)
..+..++..|.+.|+.++|+| ....|++++.||.|++|++.. .+++.++.+|.++|.|+++.+++..+++|
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 344558889999999999999 677889999999999999932 35788899999999999999999999999
Q ss_pred eCCCeEEEEeCCCC----------ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--------
Q 023018 126 GLDGLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------- 187 (288)
Q Consensus 126 ~~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------- 187 (288)
+.||+|+.|++... .....+.+|...++.+++|+....|++++.||+++.|......+ .++
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999999976422 23446778999999999999999999999999999998754332 000
Q ss_pred -------------------------------------e-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 188 -------------------------------------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 188 -------------------------------------~-------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
. .....+..+.++|...+.+++..++.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 0 01134567788898899999999999999999999
Q ss_pred ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
..+..... |...++++++.|+|-+|++++.||.+++|.+....++...
T Consensus 522 ~~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 522 KILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ccchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 98877766 7889999999999999999999999999999876666543
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-22 Score=153.62 Aligned_cols=147 Identities=23% Similarity=0.349 Sum_probs=126.4
Q ss_pred EEEEeCCCeEEEEEccC------------CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018 80 VATGGGDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (288)
Q Consensus 80 l~~~~~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (288)
+++|++...|.-+++.- ..++..+..|.++|++++. ++.++|+|+.|-+|+|||++..+.+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 45666655555555431 1235567789999999998 588999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018 148 PGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (288)
Q Consensus 148 ~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~ 225 (288)
|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.++..++.+.|+.++.||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998654 999999999999999999999999999999999999999999999999999999999987765
Q ss_pred eEE
Q 023018 226 IHV 228 (288)
Q Consensus 226 ~~~ 228 (288)
-..
T Consensus 162 a~v 164 (362)
T KOG0294|consen 162 AFV 164 (362)
T ss_pred cee
Confidence 433
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-22 Score=152.57 Aligned_cols=191 Identities=20% Similarity=0.333 Sum_probs=151.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
+...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++-...+++|+.|++|++||.
T Consensus 47 l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP 123 (323)
T ss_pred hhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEec
Confidence 344445899999999996 457889999999999999987654 45569999999999988889999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---------------------------------
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--------------------------------- 183 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------------------------- 183 (288)
+.......+.... .|.++.. .++.|++|+.+..+.+||+++...
T Consensus 124 R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 124 RNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred cccccccccccCc-eEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence 8755444444333 5777666 467888888888888888875321
Q ss_pred ---------------EEEeecc---------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCe
Q 023018 184 ---------------LNMFSGH---------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239 (288)
Q Consensus 184 ---------------~~~~~~~---------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 239 (288)
...|+.| -.||.+|+|+|--..|+||+.||.|.+||+.+.+.+..+.. ....|
T Consensus 201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI 277 (323)
T KOG1036|consen 201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSI 277 (323)
T ss_pred EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCce
Confidence 1111222 23789999999888999999999999999998888877765 45679
Q ss_pred EEEEEcCCCCEEEEEeC
Q 023018 240 TCLTISADSTLALSGSK 256 (288)
Q Consensus 240 ~~~~~~~~~~~l~~~~~ 256 (288)
.+++|+.+|..||+++.
T Consensus 278 ~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeccCCCeEEEEec
Confidence 99999999999998864
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=184.72 Aligned_cols=218 Identities=22% Similarity=0.337 Sum_probs=173.4
Q ss_pred CCEEEEEEcCCCCc---EEEEEeCCCeEEEEEccCC------eeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEE
Q 023018 65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW 134 (288)
Q Consensus 65 ~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~ 134 (288)
..-+.|+|.+.+.. ++|.|..||.|.+|+.... ..+.++..|.++|..+.|++... +||+|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999985444 6999999999999998752 24556678999999999999665 99999999999999
Q ss_pred eCCCCceeEEec--cCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCC--CeEEEEEcCCC-CEEEE
Q 023018 135 DPSSGNLKCTLE--GPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT 208 (288)
Q Consensus 135 d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~p~~-~~l~~ 208 (288)
|+...+.-..+. ...+.|.+++|+. ...+|++++.+|.+.|||+|..+++-.+..+.. .+..+.|+|+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998765444432 2456799999987 455788899999999999999988877765544 47789999965 44666
Q ss_pred EeCCC---eEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecc----eEE
Q 023018 209 GSDDA---TLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQ----YTC 279 (288)
Q Consensus 209 ~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----~~~ 279 (288)
++.|. .|.+||+|.. .+++.+.+ |..+|.++.|++ |..+|++++.|++|.+|+..||+.+..+.. ...
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 66544 5899999854 34555555 889999999999 558999999999999999999999998844 566
Q ss_pred EEEeec
Q 023018 280 VAYDLD 285 (288)
Q Consensus 280 ~~~~~d 285 (288)
+.|+|.
T Consensus 302 v~w~pr 307 (1049)
T KOG0307|consen 302 VQWCPR 307 (1049)
T ss_pred eeecCC
Confidence 666654
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=161.24 Aligned_cols=225 Identities=18% Similarity=0.304 Sum_probs=182.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE--eecccc-CcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
++.+.--..||.+++|.|.+...+++++....++.||+.+.+... ...++. ..+.....++++++|+..+..|.|++
T Consensus 250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l 329 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL 329 (514)
T ss_pred heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence 333333566899999999666589999999999999998866433 333443 35677888999999999999999999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEEEEcCCCCEEEEEeCC
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~p~~~~l~~~~~d 212 (288)
....++..+..++ ..+.+..++|+.+++.|++++.+|.|++||+++..+++++....+ .-++++.++++.+||+|+..
T Consensus 330 LhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 330 LHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred ehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 9999999998887 456799999999999999999999999999999999998875332 33678888999999999999
Q ss_pred CeEEEEeCCCC------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEe-------cce
Q 023018 213 ATLRVWNPKSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCCLN-------FQY 277 (288)
Q Consensus 213 g~i~i~d~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~~~-------~~~ 277 (288)
|.|.|||..+. +++..+.. ....|+++.|+++.++|+.++. ...+++..+.+..+..-. ..+
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 99999996532 33333333 5678999999999999987765 678999999987766643 668
Q ss_pred EEEEEeec
Q 023018 278 TCVAYDLD 285 (288)
Q Consensus 278 ~~~~~~~d 285 (288)
+|++|||.
T Consensus 486 tc~aFSP~ 493 (514)
T KOG2055|consen 486 TCMAFSPN 493 (514)
T ss_pred EEEEecCC
Confidence 99999984
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.3e-22 Score=150.00 Aligned_cols=214 Identities=17% Similarity=0.284 Sum_probs=165.3
Q ss_pred CCCCCeeEeecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEEccC---------CeeeEeeccccCcEEEEEEecC--C
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSP-TDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMD--G 119 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~--~ 119 (288)
..-......+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.-.. .....++......|++++|.|. |
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence 33456678889999999999975 4688999999999999998521 1234456667789999999995 5
Q ss_pred CEEEEEeCCCeEEEEeCCCCc------eeEEec-------cCCCCEEEEEEcC---CCCEEEEecCC-----CeEEEEEC
Q 023018 120 QLLASGGLDGLVQIWDPSSGN------LKCTLE-------GPGGGVEWVSWHP---RGHIVLAGSED-----STVWMWNA 178 (288)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~~------~~~~~~-------~~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~ 178 (288)
-.+|+++.||.++||+..... +...+. .+..+..|+.|+| ...+||+|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 589999999999999865432 222232 3556789999998 35588888876 47888865
Q ss_pred Ccc----cEEEEeeccCCCeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCC-----------------ceeEEEcCCC
Q 023018 179 DRA----AYLNMFSGHGSSVTCGDFTPD----GKTICTGSDDATLRVWNPKSG-----------------ENIHVIRGHP 233 (288)
Q Consensus 179 ~~~----~~~~~~~~~~~~i~~~~~~p~----~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~ 233 (288)
..+ ..+..+.+|..+|+.++|.|. -..|++++.|| |+||.++.. -.+..+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 432 355667789999999999994 24589999999 999998731 1234444455
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 234 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
.|...|..+.|.-.|..|.+.+.||.|++|...
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 589999999999999999999999999999864
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-23 Score=184.19 Aligned_cols=216 Identities=19% Similarity=0.384 Sum_probs=179.1
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCC-CEEEEEeC
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDG-QLLASGGL 127 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~ 127 (288)
......+..+..|+++|..+.|++..+++||+|+.+|.|.|||+.+.+.-..+. .....|.+++|+..- ..|++++.
T Consensus 103 ~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 103 NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence 344556778889999999999999888899999999999999998755444432 245789999998754 47889999
Q ss_pred CCeEEEEeCCCCceeEEeccCCC--CEEEEEEcCCCC-EEEEecCC---CeEEEEECCcc-cEEEEeeccCCCeEEEEEc
Q 023018 128 DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHPRGH-IVLAGSED---STVWMWNADRA-AYLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~ 200 (288)
+|.+.|||++..+.+..+..+.+ .+..++|||+.. .+++++.| -.|.+||+|.. .+++.+++|...|.++.|+
T Consensus 183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 99999999999887777765443 478999999654 66666654 36999999874 5778889999999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 023018 201 PDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 201 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+.+ .+|++++.|+.|.+|+..+++.+..+.. ....+..+.|+|. ...+++++-||.|.||.+.++.
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeecCC---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 955 8899999999999999999999988876 6778999999994 4588888999999999998765
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-21 Score=161.20 Aligned_cols=208 Identities=20% Similarity=0.316 Sum_probs=175.3
Q ss_pred eeEeecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
...+.++ .+.|-+++|++ ++ .|++.+.+|.|.-||+.++++...+....+.|++++.+|.+..+++||.||.+..++
T Consensus 61 ~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 3445555 46899999996 55 556888899999999999999999999999999999999999999999999888888
Q ss_pred CCCCceeE--EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--------ccCCCeEEEEEcCCCCE
Q 023018 136 PSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--------GHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 136 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~p~~~~ 205 (288)
...++... .+....+.+.+++|+|++..+++|+.||.|++||..++..+.... ....-|+++.|..+ ..
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~t 217 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-ST 217 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-Cc
Confidence 77776543 345567899999999999999999999999999999987666221 12334677777744 67
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
|++|...|.|.+||...+.++..+.. |...|.+++..+++.++++++.|+.|..|...+++.
T Consensus 218 I~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 218 IASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 99999999999999999988877776 788899999999999999999999999999887744
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.2e-22 Score=165.69 Aligned_cols=212 Identities=20% Similarity=0.346 Sum_probs=166.4
Q ss_pred CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec---------
Q 023018 47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--------- 117 (288)
Q Consensus 47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--------- 117 (288)
..-.+.|..+...++||++.|.+|+..| .+..||+|+.||+|+||.+.++.++.++. ..+.|.|++|+|
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEE
Confidence 3445667788889999999999999999 89999999999999999999998777664 334455555555
Q ss_pred -----------------------------------------------------------------------CCCEEEEEe
Q 023018 118 -----------------------------------------------------------------------DGQLLASGG 126 (288)
Q Consensus 118 -----------------------------------------------------------------------~~~~l~~~~ 126 (288)
.|.||++.+
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 444444432
Q ss_pred CC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018 127 LD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (288)
Q Consensus 127 ~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~ 203 (288)
.+ ..|.|+++...+.+.-|+...+.+.++.|+|...+|++++. ..|++||+.....++.+......|..++.+|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 21 23444444443333334445677999999999999999887 889999998887777777777889999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 204 KTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
..|+.|+.|+.+..||+.-+ ++.+++.. |...+++++|++.-.++++|+.||.+.|+.
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999998754 34455554 889999999999999999999999999985
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.7e-22 Score=166.22 Aligned_cols=228 Identities=17% Similarity=0.239 Sum_probs=166.6
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--eccccCcEEEEEEecCCC-EEEEEeCCCeE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQ-LLASGGLDGLV 131 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i 131 (288)
........|..+|..+.|.| +...|++++.|.++++||+.+.+++.. +.+|...|.+++|.|... .|++|+.||.|
T Consensus 91 ~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 91 RQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred hhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcE
Confidence 33566778999999999999 889999999999999999999888777 889999999999999655 78999999999
Q ss_pred EEEeCCCCce---------------------------eEEeccCCCCEEE---EEEcCCCCEEEEecC-CCeEEEEECCc
Q 023018 132 QIWDPSSGNL---------------------------KCTLEGPGGGVEW---VSWHPRGHIVLAGSE-DSTVWMWNADR 180 (288)
Q Consensus 132 ~i~d~~~~~~---------------------------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~ 180 (288)
.|||++-... +.....+...|.+ +.+..+...||+++. |+.|+|||++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 9999864320 0011122333444 445557778888887 99999999987
Q ss_pred ccEEE--------Eeecc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCC
Q 023018 181 AAYLN--------MFSGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISAD 247 (288)
Q Consensus 181 ~~~~~--------~~~~~---~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 247 (288)
..... .+..| ...+.++.....|.+|++.+.|+.|++|++.+.. ++..+.+.. .......-..+|+
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-~~sf~vks~lSpd 328 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-NSSFYVKSELSPD 328 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-cceeeeeeecCCC
Confidence 54322 12223 3457788888889999998899999999998643 223333221 1112223356899
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEee
Q 023018 248 STLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDL 284 (288)
Q Consensus 248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~ 284 (288)
+.+|++|+.|...++|.+.+.+.--.+ ..+.++.|.|
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 999999999999999999986544332 3444555443
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.7e-21 Score=154.58 Aligned_cols=209 Identities=22% Similarity=0.354 Sum_probs=166.4
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-- 142 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 142 (288)
.-|.|++|.+ ++. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|..|..||-. -+.+
T Consensus 247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRE 322 (626)
T ss_pred eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecccc-cccccc
Confidence 5699999999 654 459999999999999988888777799999999999999864 559999999999821 1100
Q ss_pred ---------------------------------------EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE
Q 023018 143 ---------------------------------------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183 (288)
Q Consensus 143 ---------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 183 (288)
....+|......++.+|..+.+++++.|+++++|+ ..++
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 01134566788899999999999999999999999 4555
Q ss_pred EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 184 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
..+.. ...+..|+.|+|.| .++.|+..|...+.|..+...+..-. ...+++++.|+|+|.+|+.|+.|+.|++|
T Consensus 401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe----cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 55443 46788999999999 99999999999999998854443332 47889999999999999999999999999
Q ss_pred EcCCCcEEEEe------cceEEEEEeec
Q 023018 264 NITTGKVCCLN------FQYTCVAYDLD 285 (288)
Q Consensus 264 d~~t~~~~~~~------~~~~~~~~~~d 285 (288)
.+..+...... ..+..+.||+|
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCC
Confidence 99765433332 44555555554
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=159.15 Aligned_cols=223 Identities=18% Similarity=0.202 Sum_probs=175.7
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCC
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
....-+..+..|+.+|.++.|+|.+...+++.+.||+|++-|+.+...-..+. .....+..+.|+.+...++.+..=|
T Consensus 222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence 33456778899999999999999989999999999999999998765433333 2455677888888777788888778
Q ss_pred eEEEEeCCCCce-eEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCC
Q 023018 130 LVQIWDPSSGNL-KCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDG 203 (288)
Q Consensus 130 ~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~ 203 (288)
...+||+++++. ...+.-|...|.+++++|. ..+||+++.|++++|||+|+... +.....|...|.+..|||.+
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 999999998765 5556667789999999994 45899999999999999987432 23334599999999999988
Q ss_pred CEEEEEeCCCeEEEEeCC----CCceeEEEcCCCccccC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 204 KTICTGSDDATLRVWNPK----SGENIHVIRGHPYHTEG--LTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
..|++.+.|..|+|||.. .-.+...+.....+... .....|.|+..++++|..-..|-|+|-..++.++.+
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 789999999999999983 33444444422112222 234589999999999999999999999999977775
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=4.6e-23 Score=158.35 Aligned_cols=214 Identities=21% Similarity=0.378 Sum_probs=166.4
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeCC
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
.+.+....+.+|..+|..+.++|...+++++++.|..|++|++++..++..+. +|...|.++.|++++.+|++++.|
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence 45677778899999999999999989999999999999999999999988875 699999999999999999999999
Q ss_pred CeEEEEeCCCCceeE----------------------------EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc
Q 023018 129 GLVQIWDPSSGNLKC----------------------------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (288)
Q Consensus 129 g~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 180 (288)
.+|++|++...+... +-.-|...|-|+.|- |+++++-+.++.|..|....
T Consensus 203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgk 280 (385)
T KOG1034|consen 203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGK 280 (385)
T ss_pred ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecch
Confidence 999999987432110 001244455566664 67899989999999998721
Q ss_pred -c-------------cEEEEeeccCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCCcee-EEEcCCCccccCeEEEE
Q 023018 181 -A-------------AYLNMFSGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLT 243 (288)
Q Consensus 181 -~-------------~~~~~~~~~~~~i~~~~--~~p~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~ 243 (288)
. ..+..+......|+-+. |.|-++.|+.|...|.|++||++...+. .+...+......|+..+
T Consensus 281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~s 360 (385)
T KOG1034|consen 281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTS 360 (385)
T ss_pred hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeee
Confidence 1 12333444445555554 5567788999999999999999876652 11112223567799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 244 ISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
|+.++.+|+..+.|++|.-||-.+
T Consensus 361 fS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 361 FSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ecccCcEEEEEeCCCcEEEEEeec
Confidence 999999999999999999999643
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4e-22 Score=167.41 Aligned_cols=209 Identities=20% Similarity=0.303 Sum_probs=178.2
Q ss_pred CeeEeecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCC--CEEEEEeCCCe
Q 023018 56 STHIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDG--QLLASGGLDGL 130 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~ 130 (288)
....+..|...|.|+.|+.. ..++||+++.|..|.|||+.. -.++.++.+|...|+++.|.-+| ..+++++.|..
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 34456689999999999862 457999999999999999875 45678899999999999998877 57889999988
Q ss_pred EEEEeCCCCceeEEecc-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec---cCCCeEEEEEcCC
Q 023018 131 VQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPD 202 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~p~ 202 (288)
|.+--.+.......+.. ....++.++..|..+++++++.|..|+||++.+++..+.|++ |.+....+...|.
T Consensus 573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC
Confidence 77544332222222222 234689999999999999999999999999999999999975 6677888999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
|-||++.+.|.++.++|..+|+++..+.+ |...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~G---HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMTG---HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhcC---cchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999998888 889999999999999999999999999999875
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=150.41 Aligned_cols=220 Identities=22% Similarity=0.386 Sum_probs=168.5
Q ss_pred CCCEEEEEEcC------CCCcEEEEEeCCCeEEEEEccCCeeeEeecc--ccC---cEEEEEEecCCCEEEEEeCCCeEE
Q 023018 64 SDEVYSVACSP------TDATLVATGGGDDKGFFWRINQGDWASEIQG--HKD---SVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 64 ~~~v~~~~~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
...|...+|-+ .+..++|+.+.+.-|++||..+++....+.. |.. ...+++|+|+|.+|++|- ..+|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 35688888863 1567999999999999999999998877753 332 346899999999998875 57899
Q ss_pred EEeC-CCCceeEE---e----ccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018 133 IWDP-SSGNLKCT---L----EGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (288)
Q Consensus 133 i~d~-~~~~~~~~---~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~ 203 (288)
++|+ +.|+.... + .+..+-|.+++|+| +...+++|+...++-||.-..+.++..+.+|.+.|+.+.|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9999 44432221 1 12356799999999 55699999999999999888889999999999999999999999
Q ss_pred CEEEEEeC-CCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEe----cc
Q 023018 204 KTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVCCLN----FQ 276 (288)
Q Consensus 204 ~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t-~~~~~~~----~~ 276 (288)
+.|++|.. +-.|..||++.. .++..+..+......-.-....|++++|++|+.+|.|++||+++ |..+..+ ..
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999885 678999999854 44555555432222233345678999999999999999999998 7655544 23
Q ss_pred eEEEEEee
Q 023018 277 YTCVAYDL 284 (288)
Q Consensus 277 ~~~~~~~~ 284 (288)
+.++++.|
T Consensus 343 vNgvslnP 350 (406)
T KOG2919|consen 343 VNGVSLNP 350 (406)
T ss_pred ccceecCc
Confidence 44444444
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=8e-21 Score=158.89 Aligned_cols=226 Identities=22% Similarity=0.310 Sum_probs=177.3
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------------------------------------
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------------------------------- 98 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------------------------------- 98 (288)
.+.||.+-|+++.|+| .+..|.+++.|.++.+|...+..
T Consensus 262 ll~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 4569999999999999 66777899999999999875421
Q ss_pred ------------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC----------------------------
Q 023018 99 ------------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS---------------------------- 138 (288)
Q Consensus 99 ------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------------------------- 138 (288)
....+.+|...|.+++|+|.|.+|++.+.|.+-+++-.-.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 1112357889999999999999999999998887763210
Q ss_pred -------CceeEEe------------------------------------------------------------------
Q 023018 139 -------GNLKCTL------------------------------------------------------------------ 145 (288)
Q Consensus 139 -------~~~~~~~------------------------------------------------------------------ 145 (288)
.+.++.|
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0001111
Q ss_pred ---------------------ccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEEEeeccCCCeEEEEE
Q 023018 146 ---------------------EGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNMFSGHGSSVTCGDF 199 (288)
Q Consensus 146 ---------------------~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 199 (288)
.+|.-.|++++.+|+++++|+++.. ..|++|+..+...++.+..|.-.|+.|+|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 3445678999999999999999875 35999999999888999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEe--
Q 023018 200 TPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVCCLN-- 274 (288)
Q Consensus 200 ~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~--~~~~~~-- 274 (288)
||++++|++.+.|.++.+|....... -..+.....|..-|..+.|+|++.++++++.|..|++|..... +.+...
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~ 660 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC 660 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence 99999999999999999998754322 1223334458899999999999999999999999999999888 444331
Q ss_pred ----cceEEEEEeec
Q 023018 275 ----FQYTCVAYDLD 285 (288)
Q Consensus 275 ----~~~~~~~~~~d 285 (288)
..++.+++.+-
T Consensus 661 ~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 661 LKFSLAVTAVAYLPV 675 (764)
T ss_pred hccCCceeeEEeecc
Confidence 55666666553
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4e-21 Score=147.37 Aligned_cols=206 Identities=20% Similarity=0.361 Sum_probs=165.3
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
.-...-+.|+-.|..+-... ++.++++++.|..|.+|++. ++.+..+......-+..+.+|+|+++++++..-.|++|
T Consensus 178 D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 178 DNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred cccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence 33345566777888877776 88999999999999999998 88888887766677888999999999999999999999
Q ss_pred eCC---CC-----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-------ccEEEEee----ccCCCeE
Q 023018 135 DPS---SG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-------AAYLNMFS----GHGSSVT 195 (288)
Q Consensus 135 d~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~----~~~~~i~ 195 (288)
.+- .| +....+++|.+.|..++|+++...+++.+.||++++||+.- .+.++... ...+...
T Consensus 256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~ 335 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV 335 (420)
T ss_pred EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence 863 22 23456789999999999999999999999999999999742 22222221 2233445
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
.+.++|.|+.|+.+. ...|.+|..++|+....+... |...|.+++|+++|+++++++ |..++++.-.
T Consensus 336 RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 336 RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 899999999998765 567999999998877666544 889999999999999999875 7788887633
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=147.28 Aligned_cols=154 Identities=22% Similarity=0.330 Sum_probs=133.9
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec
Q 023018 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 189 (288)
..|+.|++.|.+||+|+.+|.|.|||+.+...-..+.+|..+|++++|+++|++|++++.|..|.+||+..|.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999888899999999999999999999999999999999999888766653
Q ss_pred cCCCeEE-----------------------------------------------EEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 190 HGSSVTC-----------------------------------------------GDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 190 ~~~~i~~-----------------------------------------------~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
..++|+. ..|.+.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 2222222 23556678999999999999999999
Q ss_pred CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
.+++..++.. ....|..+.++..|+.|+..+.|..|+.|+++
T Consensus 185 ~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9888877753 23678999999999999999999999999987
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=5.9e-21 Score=159.64 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=170.4
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
-..++++-||.-.|++++.+| +++++|++.... .|++|+..+...+..+.+|.-.|+.++|+|++++|++.++|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 356788899999999999999 889999987643 49999999988888999999999999999999999999999
Q ss_pred CeEEEEeCCCCce----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEE--eeccCCCeEEEEEc
Q 023018 129 GLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNM--FSGHGSSVTCGDFT 200 (288)
Q Consensus 129 g~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~--~~~~~~~i~~~~~~ 200 (288)
.++.+|....... ....+.|..-|....|+|++.+|+|++.|.+|++|..... +.+.. ...+..+|+.++|.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 9999998754321 2235678888999999999999999999999999998776 43333 23478899999998
Q ss_pred C-C----CCEEEEEeCCCeEEEEeCCC-------C--ceeEEEcCCCccccCeEEEEEcCC----------CCEEEEEeC
Q 023018 201 P-D----GKTICTGSDDATLRVWNPKS-------G--ENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSK 256 (288)
Q Consensus 201 p-~----~~~l~~~~~dg~i~i~d~~~-------~--~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~ 256 (288)
| + +..+++|-..|.|.+|.... + .....+.....+...|+.+.|.|- ...|++|+.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 8 2 23678899999999998541 1 111222333346778999999974 235689999
Q ss_pred CCcEEEEEcC
Q 023018 257 DGSVHMVNIT 266 (288)
Q Consensus 257 dg~i~iwd~~ 266 (288)
|..++++++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999874
No 157
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=7.1e-21 Score=142.38 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=160.1
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCe
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL 130 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (288)
.|+.|...+++|.+.|+++.|.. ++ +|.+|..-|.|++|.+.+.+.+..+. .+...|+.+.--|+ ..+.+-+.|+.
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCCeeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 46788899999999999999987 44 47789999999999999988888887 57788999888887 46788889999
Q ss_pred EEEEeCCCCceeEE--e---------------------------------------------------ccCCCCEEEEEE
Q 023018 131 VQIWDPSSGNLKCT--L---------------------------------------------------EGPGGGVEWVSW 157 (288)
Q Consensus 131 i~i~d~~~~~~~~~--~---------------------------------------------------~~~~~~i~~~~~ 157 (288)
+.+|++.-+..+.. + ....+.+.+..+
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99998765221110 0 001234555554
Q ss_pred cC-CCC--EEEEecCCCeEEEEECCcccEEEE----------eecc----------------------------------
Q 023018 158 HP-RGH--IVLAGSEDSTVWMWNADRAAYLNM----------FSGH---------------------------------- 190 (288)
Q Consensus 158 ~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~---------------------------------- 190 (288)
.- .+. ++++|..+|.+.+||+.++..+.. ...|
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 32 222 567788899999999987522111 1112
Q ss_pred ------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018 191 ------------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (288)
Q Consensus 191 ------------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 258 (288)
...+..+.+-||++.+++++.|+.||||.-++.+++..+.- |...|++++|+|+..++++++.|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEEEeCCCCchhhhccCCc
Confidence 22345566778889999999999999999999998888776 789999999999999999999999
Q ss_pred cEEEEEc
Q 023018 259 SVHMVNI 265 (288)
Q Consensus 259 ~i~iwd~ 265 (288)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=8.3e-21 Score=143.77 Aligned_cols=205 Identities=23% Similarity=0.417 Sum_probs=160.3
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCC-------CeEEEEEccCC---------eeeEeec-cccCcEEEEEEecCC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMDG 119 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~~~~~i~~~~~~~~~ 119 (288)
...|..|.+.|+.++-+|.+..+|+++..+ -...||.+... +.+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 356677889999999999999999988652 23679998652 2333343 355689999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCce-eEEec-----cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEee-cc
Q 023018 120 QLLASGGLDGLVQIWDPSSGNL-KCTLE-----GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GH 190 (288)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~ 190 (288)
..+++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ ++++..||+|+.+....+. +|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence 9988876 78999999987765 33332 2344678889999 677777654 5999999999987766654 68
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 023018 191 GSSVTCGDFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 191 ~~~i~~~~~~p~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 266 (288)
...++.+.|+|+.++ |++|+.||.|+|||.+.- .++..+.+ |...|+++.|.| ..++|++|+.|..|.+|-..
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---CceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 888999999997654 789999999999999854 34555554 889999999999 45788899999999999764
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=156.65 Aligned_cols=198 Identities=17% Similarity=0.306 Sum_probs=152.1
Q ss_pred EEEcC--CCCcEEEEEeCCCeEEEEEccCCee------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018 70 VACSP--TDATLVATGGGDDKGFFWRINQGDW------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (288)
Q Consensus 70 ~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (288)
..|++ ....+||.+..+|.|.++|...... +.....|...|.++.|.|....|++++.|.++++||+.+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55554 3567899999999999999876433 244567999999999999666899999999999999999887
Q ss_pred eEE--eccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc--------------------E-------EEEeeccC
Q 023018 142 KCT--LEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA--------------------Y-------LNMFSGHG 191 (288)
Q Consensus 142 ~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--------------------~-------~~~~~~~~ 191 (288)
... +.+|.+.+.+++|+| +...|++|+.||.|.|||++-.. + +.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 766 889999999999999 55689999999999999986322 0 11112333
Q ss_pred CCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEEc-----CCCcc---ccCeEEEEEcCCCCEEEEEeCCCc
Q 023018 192 SSVTC---GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGS 259 (288)
Q Consensus 192 ~~i~~---~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~ 259 (288)
..|.+ +.+..|...|++++. |+.|+|||++......... ....+ ...+.++.....|.+|++.|.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44444 445567888998887 9999999998754432221 11112 456788888888999999999999
Q ss_pred EEEEEcCC
Q 023018 260 VHMVNITT 267 (288)
Q Consensus 260 i~iwd~~t 267 (288)
|++|++.+
T Consensus 295 Iy~ynm~s 302 (720)
T KOG0321|consen 295 IYFYNMRS 302 (720)
T ss_pred EEEEeccc
Confidence 99999986
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=4.3e-21 Score=147.61 Aligned_cols=223 Identities=18% Similarity=0.274 Sum_probs=168.6
Q ss_pred CCCCEEEEEEcCC---CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 023018 63 HSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 63 h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 138 (288)
|......++|+-+ +..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|.. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5566777888652 34578888899999999999999999999999999999999975 5889999999999999999
Q ss_pred CceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE-------------------------E---Ee
Q 023018 139 GNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-------------------------N---MF 187 (288)
Q Consensus 139 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~---~~ 187 (288)
..++..|. +|...|.++.|++++.+|++++.|.++++|++...+.. . +.
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99988875 58889999999999999999999999999998732110 0 11
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcee----------EEEcCCCccccCeEEE--EEcCCCCEEEEE
Q 023018 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENI----------HVIRGHPYHTEGLTCL--TISADSTLALSG 254 (288)
Q Consensus 188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~~ 254 (288)
..|...|-|+.|- |+++++=+-++.|..|.. +-.+.+ ..+.........++-+ +|.|-+++|+.|
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2355566666664 678999888999999987 211111 1111122233445555 455677899999
Q ss_pred eCCCcEEEEEcCCCcEEE--Ee------cceEEEEEeeccc
Q 023018 255 SKDGSVHMVNITTGKVCC--LN------FQYTCVAYDLDFV 287 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~~~~--~~------~~~~~~~~~~df~ 287 (288)
...|.|++||++...+.. ++ ..++..+|+-|-+
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 999999999998876521 11 5567777776643
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=4.8e-19 Score=143.56 Aligned_cols=217 Identities=19% Similarity=0.373 Sum_probs=175.3
Q ss_pred eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe---ecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
.+..+..|....|+|.+.+++++++. |.+.+|.++.+...++ +.. .+..|.|++|.++|+ +++|..+|.|.||+
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS 273 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence 34456778999999999999999887 8999999988765554 322 236799999999986 68999999999999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----------E---------------------
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------Y--------------------- 183 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~--------------------- 183 (288)
..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-.+ .
T Consensus 274 ~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 274 KGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred CCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 988887777779999999999999886554 9999999999831000 0
Q ss_pred --------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018 184 --------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 184 --------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
.....+|....+.++.+|+...+++++.|+.+++|+ ..++..... ...++.++.|+|.| .|+.|.
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGT 425 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEee
Confidence 011235777888999999999999999999999999 344444443 45788999999999 999999
Q ss_pred CCCcEEEEEcCCCcEEEEe---cceEEEEEeecc
Q 023018 256 KDGSVHMVNITTGKVCCLN---FQYTCVAYDLDF 286 (288)
Q Consensus 256 ~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~df 286 (288)
..|...+.|..+...+... .+++++.|+|+-
T Consensus 426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG 459 (626)
T ss_pred ccceEEEEecccceeEEEEecCCceEEEEEcCCC
Confidence 9999999999997666654 678899999873
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=1.6e-20 Score=148.05 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=163.0
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc--------C--------CeeeEeeccccCcEEEEEE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q--------GDWASEIQGHKDSVSSLAF 115 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~~~~~i~~~~~ 115 (288)
..-.....|..|..+|+++.|+| ++.+||+|+.+|.|.+|... + ......+.+|...|..++|
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W 131 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW 131 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc
Confidence 34556778899999999999999 88999999999999999876 2 2234556789999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--------
Q 023018 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------- 187 (288)
Q Consensus 116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------- 187 (288)
+|++.++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.+...
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999999999999999999999999999999999999999999999999999888886666655432211111
Q ss_pred -------------ec--cCCCeEEEEEcCCCCEEEEEe------------------------------------------
Q 023018 188 -------------SG--HGSSVTCGDFTPDGKTICTGS------------------------------------------ 210 (288)
Q Consensus 188 -------------~~--~~~~i~~~~~~p~~~~l~~~~------------------------------------------ 210 (288)
.. ...-.+.++|+|+|..|++..
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 00 011233445555554444321
Q ss_pred ---------------------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 211 ---------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 211 ---------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
....|+|||..+..++..+... |-.+++.++|+++|..|+..+.||...+.
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceEEE
Confidence 1223555555444444444333 66789999999999999999999999988
Q ss_pred EcCCCcEE
Q 023018 264 NITTGKVC 271 (288)
Q Consensus 264 d~~t~~~~ 271 (288)
.+...++-
T Consensus 370 tfe~~elg 377 (434)
T KOG1009|consen 370 TFEPWELG 377 (434)
T ss_pred EEcchhcc
Confidence 88776544
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.8e-20 Score=136.11 Aligned_cols=212 Identities=18% Similarity=0.257 Sum_probs=159.9
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----------CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
.|.+-+|+| .+++|++|..+|.|.+..+.+ ...+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 467778999 788999999999999999864 12344557899999999997 34667765 59999987
Q ss_pred CCCCce------eEEec--c-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018 136 PSSGNL------KCTLE--G-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 136 ~~~~~~------~~~~~--~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~ 202 (288)
.+.... +.... . .-..|+++...|..+-+++++.|+.++.||+++|+..+.+++|...+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 653211 11111 1 1235899999998887788889999999999999999999999999999988555
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN- 274 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~- 274 (288)
...+++|+.||++|+||.++++.+..+..... -...|.+++ -+..+|++|+ ...+.+|.+++.++.+++
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 66789999999999999999999888765321 112244444 4566887764 568999999999888876
Q ss_pred --cceEEEEEee
Q 023018 275 --FQYTCVAYDL 284 (288)
Q Consensus 275 --~~~~~~~~~~ 284 (288)
..+..+.|-.
T Consensus 245 ipa~v~~v~F~~ 256 (325)
T KOG0649|consen 245 IPARVHLVDFVD 256 (325)
T ss_pred cccceeEeeeec
Confidence 3344444433
No 164
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-20 Score=148.55 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=157.1
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (288)
.+++|++ ++..+++|+.||+++||++.+...+.....|...|.++.|+|+|++|++.+.| ..+||+..++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899998 88899999999999999998888888888899999999999999999999999 899999999965555432
Q ss_pred --CCCCEEEEEEcCCC---C--EEEEecCCCeEEEEECCcccE-----EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 148 --PGGGVEWVSWHPRG---H--IVLAGSEDSTVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 148 --~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
..-.+..+.|+.++ . .++.....+.|+.|++...+- .++.......|++++.+++|++++.|+.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 22346667787765 2 333334456677776643221 11122234579999999999999999999999
Q ss_pred EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.|++..+.+.++.++.. |...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhh--heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999988887777654 888999999999999999999999988888764
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=6.7e-20 Score=138.92 Aligned_cols=211 Identities=20% Similarity=0.340 Sum_probs=160.6
Q ss_pred CCCeeEee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeec-----cccCcEEEEEEec--CCCEEEE
Q 023018 54 DDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQ-----GHKDSVSSLAFSM--DGQLLAS 124 (288)
Q Consensus 54 ~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~ 124 (288)
-..+..|. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+. .+....++-+|+| ++..+++
T Consensus 112 lE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 33444444 5667899999999 666666555 78999999987654 33332 2556778889998 6777777
Q ss_pred EeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC
Q 023018 125 GGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP 201 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p 201 (288)
. .++++..||+++.+....+. .|...+..+.|+|+.. +|++|+.||.|++||+|.. .++..+.+|.-.++++.|+|
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 5 48999999999987766665 5777899999999755 7888999999999999875 57889999999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCc---------------------eeE-----EEcCCCccccCeEEEEEcC-CCCEEEE
Q 023018 202 -DGKTICTGSDDATLRVWNPKSGE---------------------NIH-----VIRGHPYHTEGLTCLTISA-DSTLALS 253 (288)
Q Consensus 202 -~~~~l~~~~~dg~i~i~d~~~~~---------------------~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~ 253 (288)
..+++++|+.|..|.+|...+-. ..+ .+.....|...|.+++|+. +.-++++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 55678899999999999653211 000 1122233888999999998 5566778
Q ss_pred EeCCCcEEEEEcCC
Q 023018 254 GSKDGSVHMVNITT 267 (288)
Q Consensus 254 ~~~dg~i~iwd~~t 267 (288)
-+.||++.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 89999998876653
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-20 Score=152.21 Aligned_cols=215 Identities=17% Similarity=0.234 Sum_probs=170.1
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
+..+.|+..+...+++.+.|..+++|.-... ..+....+. .-.|++......|+++|+..++|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 8999999844445556677888999975432 112222222 3345555556689999999999999999977778
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-CCCeEEEEEcCCCCE-EEEEeCCCeEEEEeC
Q 023018 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKT-ICTGSDDATLRVWNP 220 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~p~~~~-l~~~~~dg~i~i~d~ 220 (288)
+.++.|.+.|+++.++....+||+++..|.|.|..+.++.....|... ...++-+.|+|..++ |.+++.+|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 888999999999999999999999999999999999998777777644 345678999997665 567899999999999
Q ss_pred CCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018 221 KSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD 285 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d 285 (288)
....++..+.. .|..+...++|+| +..+|++.+.|..|.+||++..+....+ .+...++|+++
T Consensus 195 ~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 195 QGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred cCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence 87766655543 3889999999999 5577889999999999999987766655 67888888775
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.2e-20 Score=143.48 Aligned_cols=197 Identities=17% Similarity=0.252 Sum_probs=156.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeEEec--cCC-CCE
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPG-GGV 152 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~-~~i 152 (288)
..+|++...|.|++||..+++.+..+.++...++.+.|.. ....+.+|+.||+|++||++.......+. .+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888899999999999999999999999999999986 34578999999999999999876554433 333 467
Q ss_pred EEEEEcCCCCEEEEecC----CCeEEEEECCcccE-EEEe-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce
Q 023018 153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN 225 (288)
Q Consensus 153 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~ 225 (288)
.+++...+++.+++|+. +..|.+||+|..+. +..+ ..|...|++++|+| +.+.|++|+.||.|.+||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777778888888864 67899999998765 5554 46999999999999 778999999999999999975432
Q ss_pred eEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
--.+...-.+...|.++.|..++ +.|.+-+..+...+|++..+.....+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 11111111167779999999876 45777888999999999988755443
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=6.7e-20 Score=144.66 Aligned_cols=193 Identities=25% Similarity=0.437 Sum_probs=156.7
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
...+|..+.|.+.....+|||+.|..|+||.+..+. .+..+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999666699999999999999987532 34457789999999999999999999999999999
Q ss_pred EeCC--------C--------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE
Q 023018 134 WDPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (288)
Q Consensus 134 ~d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 197 (288)
|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12345567788999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-----C---------------CCccccCeEEEEEcCCCCEEEEEe
Q 023018 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----G---------------HPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~---------------~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
+|.|.++++++-+.|...+++.+...+.+.... . ..........++|+|+|.+|++..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999999999998888877777765433222111 0 000122346688999999998753
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=5.8e-20 Score=144.64 Aligned_cols=164 Identities=23% Similarity=0.366 Sum_probs=137.7
Q ss_pred eeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCC-------ceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCe
Q 023018 102 EIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDST 172 (288)
Q Consensus 102 ~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 172 (288)
.+.+|.++|..++|+|- ...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689999999999994 458999999999999998765 345678889999999999994 568999999999
Q ss_pred EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (288)
|.+|++.++..+.++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..|.+ ..-..+.|-.++.++.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--AKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC--CCcceeEEeccCceee
Confidence 9999999999888887 999999999999999999999999999999999998887766532 2334556777888655
Q ss_pred EEe---CCCcEEEEEcCCC
Q 023018 253 SGS---KDGSVHMVNITTG 268 (288)
Q Consensus 253 ~~~---~dg~i~iwd~~t~ 268 (288)
+|- ++.++-+||..+-
T Consensus 233 TGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eccccccccceeccCcccc
Confidence 553 4778999987653
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-20 Score=156.34 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=157.3
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEe
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWD 135 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d 135 (288)
...|+.+.|.|.+...||+++.||.|++|.+..+ .+...+..|...|+++.|+|- .+.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 4569999999999999999999999999999753 455678889999999999994 45899999999999999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeecc-CCCeEEEEEcCCCCEEEEEeCCC
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGH-GSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
+.+++....+.+|.+.|..++|+|+|+.+++.++||+|++|..+++. +++.-++. ...--.|.|.-+|+++++.+.|.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999999999999999999999999999999999999998764 34333321 22335677888999988877654
Q ss_pred ----eEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcE
Q 023018 214 ----TLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 214 ----~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
.|.+||..+.. .+.+.... ....+.--.+.+|. .++++|-.|..|++|.+.--.+
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 68889876432 22222111 01111111345554 4566888899999999865443
No 171
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=2e-19 Score=138.10 Aligned_cols=208 Identities=16% Similarity=0.215 Sum_probs=168.9
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
+.+.--..+|+|.+|++ +...+|++.....|.||..... +..+++..|...|+.++|+|..+.|++|+.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 44444568999999999 8889999999999999998764 4677889999999999999999999999999999999
Q ss_pred eCCCC---ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCCCEEE
Q 023018 135 DPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 135 d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
....+ ++...+..+....+++.|+|.++.|++|+....|.||-++...- .+.-+.+.+.|+++.|+|++-+|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 98433 34445566788899999999999999999999999998865421 122234567899999999999999
Q ss_pred EEeCCCeEEEEeCC-----C-------------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 208 TGSDDATLRVWNPK-----S-------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 208 ~~~~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+|+.|+..|||..- . |++...+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999642 1 11111121 256779999999999999999999999999987664
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=2.6e-18 Score=134.30 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=157.4
Q ss_pred CEEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
.|--+-|+. .++|..+.+ ..+++++++....+..+. ...+|.++.++. ++|+++-.+ .|+|||+.+.++++
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence 455566654 355544443 459999999888888776 567899999964 466666554 49999999999998
Q ss_pred Eecc---CCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe-EEE
Q 023018 144 TLEG---PGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRV 217 (288)
Q Consensus 144 ~~~~---~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~-i~i 217 (288)
++.. +..++.++++++.+.+++.-+ ..|.|.+||+.+-+++..+..|++++.+++|+++|.+||+++..|+ |||
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 8764 333466666666666887643 4699999999999999999999999999999999999999999997 699
Q ss_pred EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
|.+.+|+.+..++.... ...|.+++|+|++++|++.+..++|++|.+.+..
T Consensus 201 f~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999986543 5678999999999999999999999999997643
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1e-19 Score=137.99 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=157.3
Q ss_pred ecCCCCEEEEEEcCCC----CcEEEEEeCCCeEEEEEccC--Cee--eEee-----ccccCcEEEEEEec-CCCEEEEEe
Q 023018 61 SGHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQ--GDW--ASEI-----QGHKDSVSSLAFSM-DGQLLASGG 126 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~--~~~--~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~ 126 (288)
..|.-+++.+.|.|+. ..+|||++ -.+++|.+.. .+. ...+ ..+.++++++.|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688899999999943 35777766 5799999874 221 1111 23567999999986 556899999
Q ss_pred CCCeEEEEeCCCCc---eeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEE
Q 023018 127 LDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDF 199 (288)
Q Consensus 127 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~ 199 (288)
-|.+..|||+.++. ....+-.|...|..++|...+. .||+.+.||.+++||+|...--..+ .....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999873 3556778999999999998544 8899999999999999976432222 223567889999
Q ss_pred cC-CCCEEEEEeCC-CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 023018 200 TP-DGKTICTGSDD-ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 200 ~p-~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
++ +.+++++-..| ..|.|.|++.. .++..++. |...|+.++|.| ....|++++.|..+.+||+.+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 98 56777775554 46999999853 45566666 889999999999 5678999999999999999764
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=4.9e-19 Score=148.15 Aligned_cols=211 Identities=19% Similarity=0.348 Sum_probs=167.7
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--------eeEee--------------------
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEI-------------------- 103 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~-------------------- 103 (288)
..+...+.+++|.+.|+|++|+. ++..+|+|+.|..|.+|...-.. .++.+
T Consensus 41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW 119 (1081)
T ss_pred CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence 44678899999999999999999 88999999999999999864211 11100
Q ss_pred -------c--cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec---cCCCCEEEEEEcCCC-----CEEEE
Q 023018 104 -------Q--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPRG-----HIVLA 166 (288)
Q Consensus 104 -------~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~ 166 (288)
. .....+.+.+|..+|++|+.|-.+|+|.+-+-. ++....+. +..++|.+++|+|.. ..+++
T Consensus 120 S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 120 SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 0 123467888999999999999999999998743 43333333 467799999999943 37888
Q ss_pred ecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018 167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (288)
.....++.+|.+ +|+.+..-+...-...|+.+.|+|.+++.|+.|+.+.+|- +.|-.+.++.. ....|+.++..|
T Consensus 199 ~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~---~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 199 ADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE---QDSWIWTVQAKP 273 (1081)
T ss_pred EeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc---cceeEEEEEEcc
Confidence 888888988887 4666665555556678999999999999999999999995 56777777665 567899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCc
Q 023018 247 DSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 247 ~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+++.++.|+.||+|..|++....
T Consensus 274 NsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred CCceEEEEEccCeeehhhhHHhH
Confidence 99999999999999999986543
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4.6e-19 Score=151.14 Aligned_cols=217 Identities=19% Similarity=0.234 Sum_probs=149.6
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCee--eEeeccccCcEEEEEEecCCCEEEEEe-CCCe
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGL 130 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 130 (288)
.+.+..|...+...+|+| +++.|+..+.+ ..|++|++.+++. +..+.+ ....++|+|+|++|+.++ .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCc
Confidence 456777888999999999 66666665433 4699999988753 333333 344689999999888764 6776
Q ss_pred EEEE--eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 131 VQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 131 i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
+.|| |+.++.. ..+..+...+....|+|+|+.|+.++ .+|...+|++... .....+ .+.. ....|+|+|++|
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 5555 6665553 44555666688899999999777655 5677777776432 222222 2333 457899999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEecceEEEEEee
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVCCLNFQYTCVAYDL 284 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~t~~~~~~~~~~~~~~~~~ 284 (288)
++++.++ +.+||+.++........ . ....+.|+|+|++|+.++.+|.+.+|.+ .+|+....+..+.+.+..|
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 8887755 66699988865433222 1 2345789999999999999998888886 4688777775544444455
Q ss_pred ccc
Q 023018 285 DFV 287 (288)
Q Consensus 285 df~ 287 (288)
.|+
T Consensus 422 ~ws 424 (429)
T PRK01742 422 AWS 424 (429)
T ss_pred ccC
Confidence 543
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=3.5e-21 Score=164.14 Aligned_cols=210 Identities=22% Similarity=0.423 Sum_probs=167.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
++.+.||..+|+|+.|.. .+.++++|+.|..++||...+..++....+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 183 ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 455678999999999998 7889999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--------------Eee----------c---
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--------------MFS----------G--- 189 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~----------~--- 189 (288)
..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...+. .+. +
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999954 77889999999987110000 000 0
Q ss_pred ---cCCCeEEEEEcCCC-----------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEE
Q 023018 190 ---HGSSVTCGDFTPDG-----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG 254 (288)
Q Consensus 190 ---~~~~i~~~~~~p~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 254 (288)
..-..-+++|.... .+.+++-.+-.+++|++.+|+..+.+.+ |...+..+.++| +..+..++
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceeeeeecCCCcHhhhhc
Confidence 00011112222221 1223333445678899888888877777 778899999999 55566688
Q ss_pred eCCCcEEEEEcCCCcEEEEe
Q 023018 255 SKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~~~~~~ 274 (288)
+.||...|||+..|.+++.+
T Consensus 415 g~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred cCCCceEeeecccCCcceee
Confidence 99999999999999998887
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.9e-17 Score=140.56 Aligned_cols=216 Identities=33% Similarity=0.613 Sum_probs=177.1
Q ss_pred CeeEeecCCC-CEEEEEE-cCCCCcEEEEE-eCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCe
Q 023018 56 STHIFSGHSD-EVYSVAC-SPTDATLVATG-GGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL 130 (288)
Q Consensus 56 ~~~~~~~h~~-~v~~~~~-~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~ 130 (288)
....+.++.. .+..+.+ ++....+++.. ..++.+.+|+... ......+..|...|..++|+|++.++++++. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 5566666443 7788877 77343255554 4499999999998 7888888899999999999999998888885 999
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT 208 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~ 208 (288)
+++|++..+..+..+..|...+.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888888888999999999999988 55555899999999998777777 677777775 4489999989999
Q ss_pred EeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018 209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF 275 (288)
Q Consensus 209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~ 275 (288)
++.++.+++|+++.... ...+ ..|...+.++.|.|++..+++++.|+.+.+|++.+........
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 99999999999987665 4444 2267889999999988888889889999999999887666553
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=3.6e-19 Score=135.08 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=155.8
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---eeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCC
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS 137 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 137 (288)
.+..++++..|+..+.+++.+++-|-+..|||+.++. ....+-.|...|.+++|...+. .||+.+.||.+++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 4667999999999999999999999999999999863 3556778999999999998554 78999999999999999
Q ss_pred CCceeEEec---cCCCCEEEEEEcC-CCCEEEEecCC-CeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEe
Q 023018 138 SGNLKCTLE---GPGGGVEWVSWHP-RGHIVLAGSED-STVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGS 210 (288)
Q Consensus 138 ~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~ 210 (288)
.......+. ....+...++|++ +-+++|+-..| ..|.|.|+|.. .++..+++|.+.|..++|.| ....|++++
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 876544433 2345788999998 45577765554 57999999975 68899999999999999999 567899999
Q ss_pred CCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 023018 211 DDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHM 262 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 262 (288)
.|....+||+..... ...+.... ....|+.+.|++ .+.+++.+. +..+.+
T Consensus 308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999999975322 11111111 456799999997 667877664 444444
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=4.5e-19 Score=151.19 Aligned_cols=209 Identities=21% Similarity=0.304 Sum_probs=160.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEe----eccccCcEEEEEEecCCC--EEEEEe
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASE----IQGHKDSVSSLAFSMDGQ--LLASGG 126 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~i~~~~~~~~~~--~l~~~~ 126 (288)
.+...+. -..+|+|+.|+|.++.++|.|..+|.|.+||+..+.. ... ...|..+++.+.|..+.. -|++++
T Consensus 234 ~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 234 TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 3444443 3568999999999999999999999999999987654 222 235889999999976444 489999
Q ss_pred CCCeEEEEeCCCCc---------------------------------------------e------------------eE
Q 023018 127 LDGLVQIWDPSSGN---------------------------------------------L------------------KC 143 (288)
Q Consensus 127 ~dg~i~i~d~~~~~---------------------------------------------~------------------~~ 143 (288)
.||.|..|+++.-. . +.
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 99999999864210 0 00
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 023018 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK 221 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~ 221 (288)
.+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++||| ....|+++..+|.|.+||+.
T Consensus 393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 112356789999999976655555559999999988 6677888887888899999999 45667888889999999997
Q ss_pred CCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 222 SGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 222 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.... +..... .....+.+.|++.|+.|++|...|.+++|++..
T Consensus 473 ~~~~~Pv~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 473 QDDEEPVLSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccCCcccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5432 222222 456677888999999999999999999999964
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=148.80 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=166.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecC--CCEEEEEeCCCeE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMD--GQLLASGGLDGLV 131 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg~i 131 (288)
...+.|.||++-|.|+.|+. ++.+|++|+.|-.+.|||....+++..+. +|.+.|.++.|-|. .+.+++|+.|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 45577899999999999999 89999999999999999999888777764 79999999999984 4588999999999
Q ss_pred EEEeCCCC----------ceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEE----------EEeecc
Q 023018 132 QIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYL----------NMFSGH 190 (288)
Q Consensus 132 ~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~ 190 (288)
+++|+... .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++..... ..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999742 2344456788889999999987 68999999999999999874211 111112
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------------------eeEEEc-CCCccc--------cCeEEE
Q 023018 191 GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE------------------NIHVIR-GHPYHT--------EGLTCL 242 (288)
Q Consensus 191 ~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~-~~~~~~--------~~v~~~ 242 (288)
--...++.++| +..+|++|+.+-..++||.+... ++.-+. ++-... ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 23467889999 55678999999999999954211 011111 110001 125667
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 243 TISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 243 ~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 89999977776655668999999988877655
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=3e-17 Score=139.26 Aligned_cols=222 Identities=32% Similarity=0.613 Sum_probs=180.4
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEeecccc-CcEEEEEE-ecCCC-EEEEEeC-CCeEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ 132 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~-~l~~~~~-dg~i~ 132 (288)
..+..|...+.++.+.+ .+..++.++.++.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. ++.+.
T Consensus 59 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 46788999999999999 77788888899999999998876 666666544 36777777 77777 5555444 99999
Q ss_pred EEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-EEEEE
Q 023018 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG 209 (288)
Q Consensus 133 i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~ 209 (288)
+|+... ......+..|...+..++|+|++..+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999998 7778888889999999999999998888885 99999999999888899988999999999999988 55555
Q ss_pred eCCCeEEEEeCCCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-EEEe----cceEEEEEe
Q 023018 210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-CCLN----FQYTCVAYD 283 (288)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~-~~~~----~~~~~~~~~ 283 (288)
+.|+.|++||...+.... .+.. |.... ...|+|++.++++++.++.+++|++..... +..+ ..+.++.|.
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 899999999988777766 4554 44443 238999988888999999999999997765 4333 456666666
Q ss_pred e
Q 023018 284 L 284 (288)
Q Consensus 284 ~ 284 (288)
|
T Consensus 294 ~ 294 (466)
T COG2319 294 P 294 (466)
T ss_pred C
Confidence 5
No 182
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.2e-19 Score=148.21 Aligned_cols=205 Identities=20% Similarity=0.232 Sum_probs=170.8
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
+.+.-.|..+|..+.|+. .|.+|++... ...|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|
T Consensus 514 v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred eEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence 667778999999999999 7888888654 356999999887766667667788999999999999988875 67999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
||+..+..+..+......|..++.+|.|..|+.|+.|+.+..||+.-. ++.++++.|...++.++|++.-.++++|+.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999998887777777778999999999999999999999999999754 6788888999999999999998999999999
Q ss_pred CeEEEEe------CCCCc---eeEEEcCCCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 213 ATLRVWN------PKSGE---NIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 213 g~i~i~d------~~~~~---~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
|++.||- +-... ++..+.+|.. ....|..+.|+|...+|++++.||+|++|
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999884 22222 2344454321 12348889999999999999999999998
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=132.33 Aligned_cols=196 Identities=19% Similarity=0.361 Sum_probs=154.1
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCC------------eeeEeec-cccCcEEEEEEe-------cCCCEEEEEe
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQG------------DWASEIQ-GHKDSVSSLAFS-------MDGQLLASGG 126 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~-~~~~~i~~~~~~-------~~~~~l~~~~ 126 (288)
...+.|+| ++..|.+-+.|..+.+|++... +...++. .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45788999 7778888999999999998531 0111111 134567777775 5677999999
Q ss_pred CCCeEEEEeCCCCceeEEeccCC-----CCEEEEEEcCCCCEEEEecCCCeEEEEEC-CcccEEEE---e----eccCCC
Q 023018 127 LDGLVQIWDPSSGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRAAYLNM---F----SGHGSS 193 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~---~----~~~~~~ 193 (288)
.+.-|++||.-+|+....+..-. ....+++|+|+|..|++|.. ..|++||+ |.|.-... + .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999999888776422 24678999999999998866 89999999 55532221 1 123677
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 023018 194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT 267 (288)
Q Consensus 194 i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t 267 (288)
+.+++|+| +...+++|+....+-||.-..+.++..+.+ |.+.|+.++|.++|+.|++|.. +..|..||++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 89999999 555899999999999998877888888876 8899999999999999999875 77999999985
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.9e-17 Score=121.97 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=152.3
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------eEe--eccc-----cCcEEEEEEecCCCE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASE--IQGH-----KDSVSSLAFSMDGQL 121 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~--~~~~-----~~~i~~~~~~~~~~~ 121 (288)
.++-..++|.++|+.++|+. .+|.+|+ ||.|+=|....... +.. .+-| -..|++|...|..+-
T Consensus 53 ~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS 128 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS 128 (325)
T ss_pred cceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc
Confidence 44555699999999999983 3555555 49999998865321 111 1112 236889999998877
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc----------C
Q 023018 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----------G 191 (288)
Q Consensus 122 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~ 191 (288)
++.++.|+.++-||+++|+....+++|...+.++.--.....+++|+.||++++||+++++.+..+... .
T Consensus 129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 777778999999999999999999999999999998666678999999999999999999988776531 2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
..|.+++- +...|++|+ .-.+.+|.+++.+....+. ...++..+.|..+ .+++++..+.|.-|.+.
T Consensus 209 ~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 209 KWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec
Confidence 34555554 456777765 5679999999998888887 4567888888654 66677777778888764
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=8.7e-17 Score=125.92 Aligned_cols=207 Identities=16% Similarity=0.230 Sum_probs=153.7
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEecCCCEEEEE--eCCCeEEEEeCCC
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASG--GLDGLVQIWDPSS 138 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 138 (288)
..+|.++.++. +.|+++-. ..|+|||+++.+.++++.. +...+.++++++.+.++|.= ...|.|.|||..+
T Consensus 87 pt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 87 PTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 35677777764 34445554 4599999999999888753 45567777777777788754 3569999999999
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCe-EEEEECCcccEEEEeeccC--CCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGHG--SSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
-+....+..|.+.+.+++|+++|.+||+++..|+ |||+.+.+|+.+..|+... ..|.+++|+|++++|++.+..++|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 9999999999999999999999999999999997 6999999999999887433 467899999999999999999999
Q ss_pred EEEeCCCCcee----------------------------------EEEcCCCccccCe-EEEEEc--CCCCEEEEEeCCC
Q 023018 216 RVWNPKSGENI----------------------------------HVIRGHPYHTEGL-TCLTIS--ADSTLALSGSKDG 258 (288)
Q Consensus 216 ~i~d~~~~~~~----------------------------------~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg 258 (288)
+||.+...... +.+.......... ..+.+. +....+.+++.||
T Consensus 243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG 322 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG 322 (391)
T ss_pred EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence 99987532100 0000000011111 223444 3667888899999
Q ss_pred cEEEEEcCC--CcEEEEe
Q 023018 259 SVHMVNITT--GKVCCLN 274 (288)
Q Consensus 259 ~i~iwd~~t--~~~~~~~ 274 (288)
.++.|.+.- |-.+..+
T Consensus 323 ~~y~y~l~~~~gGec~li 340 (391)
T KOG2110|consen 323 HLYSYRLPPKEGGECALI 340 (391)
T ss_pred eEEEEEcCCCCCceeEEE
Confidence 999998853 4444443
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.4e-19 Score=136.79 Aligned_cols=214 Identities=19% Similarity=0.292 Sum_probs=159.5
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeec--ccc-CcEEEEEEecCCCEEEEEe-
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQ--GHK-DSVSSLAFSMDGQLLASGG- 126 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~l~~~~- 126 (288)
...+.+..+++|...+..++|... .+..+.+|+.||+|++||++......++. .+. .+..+++.+-+++.+++|.
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 345678888999999999999874 56788999999999999999866554443 343 4666777766777888875
Q ss_pred ---CCCeEEEEeCCCCce-eEE-eccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc----EEEEeeccCCCeEE
Q 023018 127 ---LDGLVQIWDPSSGNL-KCT-LEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTC 196 (288)
Q Consensus 127 ---~dg~i~i~d~~~~~~-~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~ 196 (288)
.+-.|.+||++..+. +.. ...|..-|++++|+| +.++|++|+.||-|.+||++... ++.++ .+.+.|.+
T Consensus 138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~ 216 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHL 216 (376)
T ss_pred cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeee
Confidence 367899999998765 443 456889999999999 56799999999999999997642 23333 37778999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEE---------------------------------cC-----------
Q 023018 197 GDFTPDG-KTICTGSDDATLRVWNPKSGENIHVI---------------------------------RG----------- 231 (288)
Q Consensus 197 ~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------~~----------- 231 (288)
+.|...+ +.|.+-+..+...+|++..+.....+ .+
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9998765 35777778888899987654321000 00
Q ss_pred ---------------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 232 ---------------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 232 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
...|..-|+++.|...+.++++|++||.+.+|...
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 00133446667777778899999999999999964
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=6.1e-19 Score=144.07 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=154.8
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
+.......|.++|.|-.|+| ++.-|++++.||.|++|. ++|....++.....+|.|++|.|+...++.+. .+.+.|=
T Consensus 95 rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 33445567999999999999 777888999999999999 45665566666778999999999988766653 4678888
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
.+..+..+...+.|.+-|.++.|++..+++++|+.|-..++||- .|..+..-..|..+|++++|.|+ ..++.++. .+
T Consensus 172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence 88877778888999999999999999999999999999999997 56677777789999999999999 55555553 33
Q ss_pred EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
+| +..+ ..+.|..++|++||..+++|+..|.+.+-.
T Consensus 249 ~R------------~~~p--~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 249 AR------------FSSP--RVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ee------------ecCC--CccceEEEEEcCCCceeeccccCceEEEee
Confidence 44 2222 456789999999999999999999876643
No 188
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=142.44 Aligned_cols=137 Identities=24% Similarity=0.401 Sum_probs=120.0
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----------------------------eeeEeeccccCcEEEEEEe
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------------------------DWASEIQGHKDSVSSLAFS 116 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~~~~~~~~~~~i~~~~~~ 116 (288)
..|+|+.|-|.+..++.++-.+|.+++|+..-. .++..+..-.+.|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 689999999987888888899999999976310 0111222235688999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (288)
Q Consensus 117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (288)
|+|++||+.+.||.++|||..+.+++..++..-+...|++|+|+|++|++|+.|--|.||.+...+.+..-++|++.|..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999999999999999999988888887888999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q 023018 197 GDFTP 201 (288)
Q Consensus 197 ~~~~p 201 (288)
++|.|
T Consensus 380 VaFDp 384 (636)
T KOG2394|consen 380 VAFDP 384 (636)
T ss_pred Eeecc
Confidence 99987
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.5e-17 Score=127.88 Aligned_cols=208 Identities=18% Similarity=0.313 Sum_probs=146.9
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----e----------eeEeeccccCcEEEEEEecCCCEEEEEe-C
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----------WASEIQGHKDSVSSLAFSMDGQLLASGG-L 127 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 127 (288)
.+..|+|++|-|..+..|+.|... -|.||..... . .+....+| .+|++|.|+++|..+++++ .
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 456899999999888899998884 5999987531 1 11223345 6899999999999999887 4
Q ss_pred CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
+..|.|||..++..+.......+.++-+.|+|++.+|++++-|+..++|...+...........+.|...+|+|.|++|+
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 67999999999987766655667799999999999999999999999996544322222223445899999999999875
Q ss_pred EEeCCCeEEEEeCCCCc------------eeEEE---------cCCCccccCeEEEEEcCCCCEEEEEeCCC--------
Q 023018 208 TGSDDATLRVWNPKSGE------------NIHVI---------RGHPYHTEGLTCLTISADSTLALSGSKDG-------- 258 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~------------~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 258 (288)
.++. |.-++|.+.-.. ....+ .+.....+.+.+++|.|.|.+|++.-..+
T Consensus 297 f~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 297 FACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 5442 333444432100 01111 11111246788999999999999875543
Q ss_pred cEEEEEcCCCcEEEE
Q 023018 259 SVHMVNITTGKVCCL 273 (288)
Q Consensus 259 ~i~iwd~~t~~~~~~ 273 (288)
.|.+||.+..-++..
T Consensus 376 ~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 376 HISRFDTRKSPPVEL 390 (445)
T ss_pred hhhhhcccccCceEE
Confidence 477788776554443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=146.04 Aligned_cols=210 Identities=20% Similarity=0.365 Sum_probs=164.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 145 (288)
.|..++|-|++..++++++ ..+.+||...|..+.++++|+..|++++|+.+|+.+|+|+.|..|.+|...-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 6999999995555555444 67999999999999999999999999999999999999999999999986533322 2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (288)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~ 225 (288)
..|...|.|+.|+|-...|++++- ...-+|...+... ...+ ....+.+.+|..||++|+.|-.+|+|.+-+- +++.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCc
Confidence 248889999999998889999887 5677888765432 2222 3456888999999999999999999999864 5665
Q ss_pred eEEEcCCCccccCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018 226 IHVIRGHPYHTEGLTCLTISADS-----TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL 284 (288)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~ 284 (288)
.-.+..+.+...+|.+++|+|.. ..+++.....++.+|.+.. +.+..- +...|+.|.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~ 232 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFT 232 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheecc
Confidence 55666555578899999999942 5788889999999998864 444321 5555555544
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=9.1e-20 Score=146.29 Aligned_cols=210 Identities=14% Similarity=0.187 Sum_probs=180.9
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (288)
-..+.++. ++..++.|+..|.|-.+|+.+++....+. -...|.++.|..+.++||++ ....++||| ..|..++.++
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 35677777 78888899999999999999999988887 46688999998888777776 567899999 5677788887
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (288)
Q Consensus 147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (288)
.+. .+..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-...+-+|...|+|.+|......++
T Consensus 208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 664 5999999999999999999999999999999999999988899999999999899999999999999999888777
Q ss_pred EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEee
Q 023018 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDL 284 (288)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~ 284 (288)
..+.. |.++|.++++.++|+++++.+.|..++|||+++...+.++ .+...++||.
T Consensus 287 vKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq 344 (545)
T KOG1272|consen 287 VKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ 344 (545)
T ss_pred HHHHh---cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc
Confidence 66665 8899999999999999999999999999999998777665 3344444443
No 192
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.4e-17 Score=131.09 Aligned_cols=223 Identities=14% Similarity=0.162 Sum_probs=174.4
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEecCCCE-EEEEeCC--C
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQL-LASGGLD--G 129 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d--g 129 (288)
+......+.+|..++.. ++ .|++|-.+|.+.+|....+. .+..+.. ..++..|.-++...+ +++|+.. .
T Consensus 98 ~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 98 AKTVSLGTKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccccccccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhccc
Confidence 34555667778888765 33 56678888999999988432 3333432 356667777776654 5558887 7
Q ss_pred eEEEEeCCCCceeEEeccC---------CCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEE
Q 023018 130 LVQIWDPSSGNLKCTLEGP---------GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCG 197 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~ 197 (288)
.+.|||+...+.+..-+.. .-.++.+.|-+. ...|++++.-+.+++||.+.+ +++..+.....+++++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 8999999988655543321 124678888886 789999999999999999875 6888888889999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--
Q 023018 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-- 274 (288)
Q Consensus 198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-- 274 (288)
...|.++++++|..-|.+..||++.+..... +.+ ..+.|+++..+|.+.+|++++-|..|+|+|+.|.+++...
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCC---ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 9999999999999999999999999887665 444 6788999999999999999999999999999997777644
Q ss_pred -cceEEEEEeecc
Q 023018 275 -FQYTCVAYDLDF 286 (288)
Q Consensus 275 -~~~~~~~~~~df 286 (288)
...+++.+.+++
T Consensus 331 Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 KSRLTFILLRDDV 343 (412)
T ss_pred hccccEEEecCCc
Confidence 456677766554
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=141.60 Aligned_cols=184 Identities=17% Similarity=0.322 Sum_probs=147.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (288)
Q Consensus 77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 156 (288)
...|+.++.||.+.|.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++.....+|+|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 35677889999999887 45676777889999999999999999999999999999997 66666666666777899999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc
Q 023018 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236 (288)
Q Consensus 157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 236 (288)
|.|+.+.++.+.. +++.|=-+.....+-.+++|.+-|.++.|+|..+.+++|+.|-..+|||.. |+.+..-.. |.
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---~e 227 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---EE 227 (737)
T ss_pred ECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---hc
Confidence 9998877666654 677777777676778889999999999999999999999999999999975 555444333 88
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 237 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
.+|++++|.|+ ..++.++. .++++=..+.|.
T Consensus 228 y~ITSva~npd-~~~~v~S~-nt~R~~~p~~GS 258 (737)
T KOG1524|consen 228 YAITSVAFNPE-KDYLLWSY-NTARFSSPRVGS 258 (737)
T ss_pred cceeeeeeccc-cceeeeee-eeeeecCCCccc
Confidence 99999999999 45555543 355544444443
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=3.4e-18 Score=140.29 Aligned_cols=178 Identities=25% Similarity=0.417 Sum_probs=149.5
Q ss_pred CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----------eeeEeeccccCcEEEEEEecCCC
Q 023018 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQ 120 (288)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~ 120 (288)
....+++.+|++|.++|.|+++.+ ++..+++|+.||+|+.|++... .....+.+|.+.|+.+++++...
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~ 409 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD 409 (577)
T ss_pred ccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence 345688999999999999999999 8889999999999999976521 23456789999999999999888
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEe---------------------------------------------c-------cC
Q 023018 121 LLASGGLDGLVQIWDPSSGNLKCTL---------------------------------------------E-------GP 148 (288)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------------~-------~~ 148 (288)
.|++++.||++++|+...... .+| . ..
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR 488 (577)
T ss_pred ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence 999999999999998654332 111 0 00
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~ 228 (288)
...+..+.++|...+.+++..++.|+++|..+++++.....|...++++++.|+|-+|++++.|+.+++|.+....++..
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 12467788899999999999999999999999999999999999999999999999999999999999999876655544
Q ss_pred Ec
Q 023018 229 IR 230 (288)
Q Consensus 229 ~~ 230 (288)
..
T Consensus 569 s~ 570 (577)
T KOG0642|consen 569 ST 570 (577)
T ss_pred cc
Confidence 43
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.4e-16 Score=135.72 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=146.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCC--e
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG--L 130 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~ 130 (288)
.+.+..+...+...+|+| +++.|+..+ .+..|++|++.+++..... .....+..+.|+|+|+.|+.. +.+| .
T Consensus 191 ~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence 344555677899999999 555555432 2457999999887543322 233344568999999988765 4444 5
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-C--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
|++||+.+++.... ..+...+....|+|+|+.|+..+.. + .|+++++.++.. ..+...........|+|+|++|+
T Consensus 269 I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 269 LYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEE
Confidence 88999988765544 3344567889999999988777654 3 466667766654 33333444566789999999988
Q ss_pred EEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCcEEEEecceEEEE
Q 023018 208 TGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS---VHMVNITTGKVCCLNFQYTCVA 281 (288)
Q Consensus 208 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~t~~~~~~~~~~~~~~ 281 (288)
..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. ++++++. |+....+..+...+
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~ 420 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQV 420 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCc
Confidence 76543 35889999887643 34321 12345689999999998887764 6777774 55555554333344
Q ss_pred Eeecc
Q 023018 282 YDLDF 286 (288)
Q Consensus 282 ~~~df 286 (288)
..|.|
T Consensus 421 ~~p~W 425 (429)
T PRK03629 421 KFPAW 425 (429)
T ss_pred CCccc
Confidence 44444
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.7e-17 Score=139.99 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=178.9
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeeeEee--------------------------
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDA--TLVATGGGDDKGFFWRINQGDWASEI-------------------------- 103 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------------- 103 (288)
..+..++.+.+|..+++.+.+.|... .++++++.+|.|++|+...+..++++
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 34566778899999999999999555 57779999999999998665433322
Q ss_pred -----------------------------------------------------------------------------ccc
Q 023018 104 -----------------------------------------------------------------------------QGH 106 (288)
Q Consensus 104 -----------------------------------------------------------------------------~~~ 106 (288)
..|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 125
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC--C--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 182 (288)
...+++.+++|+++++|+|..||.|.+|.--. . ...+.+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 55678999999999999999999999996432 1 2344566688899999999999999999999999999999988
Q ss_pred EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc--------ccCeEEEEEcCCCCEEEEE
Q 023018 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALSG 254 (288)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~ 254 (288)
.+-+....++|..+.++|++.+.++...|..|.+....+.....++.+..+. ..-.+.++++|..+.++-.
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 4445557889999999999999999999999999988766655555544322 3446778999977788888
Q ss_pred eCCCcEEEEEcCCCcEEEEe
Q 023018 255 SKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~~~~~~ 274 (288)
+..|.|.+||+.+.+.+..+
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred CCCceEEEEeccccceeeeE
Confidence 89999999999998877655
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.79 E-value=8.1e-17 Score=121.93 Aligned_cols=155 Identities=16% Similarity=0.273 Sum_probs=113.7
Q ss_pred EEEEEecCCCEEEEEeC----------CCeEEEEeCCC-CceeEEecc-CCCCEEEEEEcCCCCEEEEe--cCCCeEEEE
Q 023018 111 SSLAFSMDGQLLASGGL----------DGLVQIWDPSS-GNLKCTLEG-PGGGVEWVSWHPRGHIVLAG--SEDSTVWMW 176 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~ 176 (288)
..+.|+|+|++|++-.. -|...+|.++. +.....+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987665433 13455555532 223333332 34579999999999987654 456799999
Q ss_pred ECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE
Q 023018 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (288)
Q Consensus 177 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 253 (288)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... + ..++.++|+|+|++|++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEE
Confidence 996 66666664 567889999999999999874 4679999999887776654 3 34789999999999998
Q ss_pred EeC------CCcEEEEEcCCCcEEEEe
Q 023018 254 GSK------DGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 254 ~~~------dg~i~iwd~~t~~~~~~~ 274 (288)
+.. |+.++||++. |+++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 864 7889999985 6666543
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=8.8e-18 Score=140.00 Aligned_cols=216 Identities=18% Similarity=0.299 Sum_probs=166.1
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--e----EeeccccCcEEEEEEecCCCEEEEEeC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A----SEIQGHKDSVSSLAFSMDGQLLASGGL 127 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~----~~~~~~~~~i~~~~~~~~~~~l~~~~~ 127 (288)
.+.+.++.+|.+.|+.+.|+|....+||+|+.|..|+||.+..+.. + ..+.+..-.+-++.|+|...-|+..+.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a 148 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA 148 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc
Confidence 3467789999999999999998889999999999999999985321 1 123333457889999997776666667
Q ss_pred CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-ccEEEEeeccCCC-eEEEEEcCCCCE
Q 023018 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSS-VTCGDFTPDGKT 205 (288)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-i~~~~~~p~~~~ 205 (288)
.|+++|||+.+++.+..+.+|...|.+..|+.+|.+++++++|..|+|||.+. +.+++...+|.+. -..+.|.-+-..
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 89999999999999999999999999999999999999999999999999986 4677877877653 345677655456
Q ss_pred EEEEeCC----CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEE
Q 023018 206 ICTGSDD----ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 206 l~~~~~d----g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~~ 271 (288)
|++.+.+ ..|++||.+.. ..+.++.-. ....|.---|.||.++|+. |-.+.+++.+.+...++.
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld--~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPy 298 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELD--SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPY 298 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEee--cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcc
Confidence 6665543 46899998754 344444322 2344555568888777664 555788999998765543
No 199
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.2e-16 Score=134.98 Aligned_cols=209 Identities=18% Similarity=0.213 Sum_probs=141.9
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCC--
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDG-- 129 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg-- 129 (288)
..+.+..|...+.+.+|+| +++.|+..+. ...|++|++.+++... +....+...++.|+|+|+.|+ +.+.+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred CceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 3455666778899999999 6666665543 3469999998776533 333444556789999999775 445555
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
.|++||+.+++.. .+..+.......+|+|+|+.|+.++. +| .|+++++.+++... +.........++|+|+|++|
T Consensus 273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEE
Confidence 6999999887654 34444444567899999998887764 44 47777877665433 32233445578999999999
Q ss_pred EEEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe
Q 023018 207 CTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN 274 (288)
Q Consensus 207 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~ 274 (288)
+..+.++ .|.+||+.+++.. .+.. ........|+|+|++|+..+.+ +.|+++++..+ ....+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence 8765443 6999999877654 3332 1233456899999988766553 46888888544 44444
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.8e-16 Score=132.55 Aligned_cols=209 Identities=15% Similarity=0.160 Sum_probs=146.5
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDG 129 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg 129 (288)
....+.+..|...+...+|+| +++.|+..+. +..|++|++.+++.. .+..+.+.+...+|+|+|+.|+ +.+.+|
T Consensus 191 g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 344456777888999999999 5555555442 468999999887653 3444566778899999999775 445555
Q ss_pred e--EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018 130 L--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (288)
Q Consensus 130 ~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~ 204 (288)
. |++||+.++... .+..+........|+|+|+.|+..+. + ..|+++|+..+... .+......+....|+|+|+
T Consensus 269 ~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 269 NTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGD 346 (435)
T ss_pred CceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCC
Confidence 4 777898877653 44445555677999999998887764 3 36888898766543 3433445567788999999
Q ss_pred EEEEEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcEE
Q 023018 205 TICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITTGKVC 271 (288)
Q Consensus 205 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~t~~~~ 271 (288)
+|+....+ ..|.+||+.++. ...+.. ...+....|+|+|+.|+..+.+ ..++++++.+++..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~----~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG-ERILTS----GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEeccC----CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 99877643 368889986554 334432 2246678999999988765442 36888998776654
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=8.1e-16 Score=127.25 Aligned_cols=202 Identities=12% Similarity=0.176 Sum_probs=135.8
Q ss_pred CEEEEEEcCCCCcEEEEE-eCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 023018 66 EVYSVACSPTDATLVATG-GGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSG 139 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 139 (288)
....++|+| ++++++++ ..++.|.+|++.+. +.+..+. +......++++|+++++++++ .++.|.+||+.+.
T Consensus 81 ~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 457899999 55555554 45899999999742 2223333 223457788999999886554 6699999999764
Q ss_pred ceeE-------EeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCc--c--cEEEEeecc------CCCeEEEEEcC
Q 023018 140 NLKC-------TLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A--AYLNMFSGH------GSSVTCGDFTP 201 (288)
Q Consensus 140 ~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~~p 201 (288)
..+. ... .......+.|+|++++++++.. ++.|.+|++.. + +.+..+... ......+.++|
T Consensus 159 g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 111 2345778999999999988876 89999999973 2 223333221 11234688999
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCcE
Q 023018 202 DGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT--TGKV 270 (288)
Q Consensus 202 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--t~~~ 270 (288)
++++|+++.. ++.|.+|++........+............+.++|+|++|++++. ++.|.+|++. +|.+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 9999998864 689999998643321222211111234567899999999998775 8899999874 4543
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=1.3e-16 Score=141.75 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=167.6
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCCCEE
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQLL 122 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 122 (288)
..+.+..+..+..|+..|..++.++..+.++++|+.||+|++|+.... +...++......+.++...+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 356677888999999999999999966699999999999999998752 2223344356788999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcee-------EEeccC-CCC-EEEEEEcC-CC-CEEEEecCCCeEEEEECCcccEEEEee--c
Q 023018 123 ASGGLDGLVQIWDPSSGNLK-------CTLEGP-GGG-VEWVSWHP-RG-HIVLAGSEDSTVWMWNADRAAYLNMFS--G 189 (288)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~-------~~~~~~-~~~-i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~ 189 (288)
|+++.||.|++.++...... .....+ .+. +...+|.. .+ ..++.++..+.|..||++......+++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998763111 111111 122 33333332 22 378888899999999999876554443 3
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC---CCCEEEEEe--CCCcEEEEE
Q 023018 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA---DSTLALSGS--KDGSVHMVN 264 (288)
Q Consensus 190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~--~dg~i~iwd 264 (288)
..+.|++++.+|.+++++.|+..|.+.+||++=+.++...... +..+++.+..+| .....++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 4578999999999999999999999999999988777776543 457788887776 234555544 467899999
Q ss_pred cCCCcEEEEe
Q 023018 265 ITTGKVCCLN 274 (288)
Q Consensus 265 ~~t~~~~~~~ 274 (288)
+.+|.+-.++
T Consensus 1272 ~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1272 METGLRQTVL 1281 (1431)
T ss_pred cccCcceEEE
Confidence 9999776665
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-16 Score=126.66 Aligned_cols=218 Identities=16% Similarity=0.239 Sum_probs=165.9
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------CeeeEeec-cccCcEEEEEEecCCCEEEEEeCC
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
..+-+.+|.+-|.++.|+. ++++||+|+.|..+++|++.. .+++.... .|...|.|++|....+++++|..+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3455678999999999999 789999999999999999864 34444443 356899999999988899999999
Q ss_pred CeEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEE--EeeccCCCeEEEEEcC-C
Q 023018 129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLN--MFSGHGSSVTCGDFTP-D 202 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~i~~~~~~p-~ 202 (288)
++|.+.|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+... .+. ...........+.|+| .
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999988887753 33589999999999999999999999999998754 221 2222445678889999 5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-eEE---EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 203 GKTICTGSDDATLRVWNPKSGEN-IHV---IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
..+|++.+..+.+.+||++..+. +.. +.+.+.....-.++.|+|.|..|.+.-....-.+||+-+.++....
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 56778888889999999985432 111 1111112223356789999998888766666777888776655443
No 204
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=4.1e-16 Score=132.95 Aligned_cols=207 Identities=21% Similarity=0.205 Sum_probs=136.3
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeC-C--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEE
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGG-D--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQI 133 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i 133 (288)
+.+..+...+.+.+|+| +++.|+..+. + ..|++|++.+++... +....+.+.+..|+|+|+.|+ +.+.+|...|
T Consensus 189 ~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 189 QSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred eEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 44556778899999999 5566655443 2 459999998876543 333345567899999999876 4567777666
Q ss_pred Ee--CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEE--ECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018 134 WD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (288)
Q Consensus 134 ~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 208 (288)
|. +..+. ...+..+........|+|+|+.|+..+. +|...+| ++.++.... +...........|+|+|++|+.
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEE
Confidence 64 44444 4445445555667899999998876654 4555555 544544322 2222333456789999999987
Q ss_pred EeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEe
Q 023018 209 GSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLN 274 (288)
Q Consensus 209 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~ 274 (288)
.+.++ .|.+||+.+++... +.. ........|+|+|+.|+.++.++ .+++.++ +|+....+
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l 410 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL 410 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence 77554 69999998876543 332 12235679999999888776543 4666676 45555544
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.5e-17 Score=130.94 Aligned_cols=174 Identities=19% Similarity=0.253 Sum_probs=134.7
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-
Q 023018 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG- 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 189 (288)
..++|+.+|..+++|+.||++|||+..+...+.....|...|.++.|+|+|++|++-+.+ ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999988888777788899999999999999999999998 999999999976665542
Q ss_pred -cCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018 190 -HGSSVTCGDFTPDG---KT--ICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (288)
Q Consensus 190 -~~~~i~~~~~~p~~---~~--l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (288)
.......+.|+.++ .+ ++.....+.|+.|++..... .......-.....|++++.+++|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23345667777765 22 22333455677777653322 111111111345799999999999999999999999
Q ss_pred EEEcCCCcEEEEe-----cceEEEEEeec
Q 023018 262 MVNITTGKVCCLN-----FQYTCVAYDLD 285 (288)
Q Consensus 262 iwd~~t~~~~~~~-----~~~~~~~~~~d 285 (288)
|++..+.+++... .-++.+.|+||
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 9999999888766 45677888876
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.5e-15 Score=116.84 Aligned_cols=177 Identities=14% Similarity=0.280 Sum_probs=139.3
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEEeccCC--CCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPG--GGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~ 163 (288)
..|.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|+||... +.+.++.+.... .+..+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999977777777776 6789999999765 555554 5789999988 556666665332 22444443334445
Q ss_pred EEE-ecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeEEEcCCCccccCe
Q 023018 164 VLA-GSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIRGHPYHTEGL 239 (288)
Q Consensus 164 l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v 239 (288)
||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++++-+|..+|+++..|+ |||||..+|.++..++... ....|
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheE
Confidence 555 34569999999987654 4778899999999999999999999999997 6999999999999987543 45679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 240 TCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
.+++|+|+..+|++++..|+++|+.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999999753
No 207
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.75 E-value=7e-16 Score=116.82 Aligned_cols=156 Identities=17% Similarity=0.338 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcEEEEEeC---------CCeEEEEEccC-CeeeEeecc-ccCcEEEEEEecCCCEEEEE--eCCCeEEEE
Q 023018 68 YSVACSPTDATLVATGGG---------DDKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIW 134 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~ 134 (288)
..+.|+|.+..+++.... -|...+|.++. ......+.- ..++|.+++|+|+++.||+. ...+.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 457899955555544441 23456666633 233444432 34579999999999987655 356799999
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+.... | ..++.++|+|+|++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55566554 456889999999999999874 4679999999888887765 3 34789999999999998874
Q ss_pred ------CCeEEEEeCCCCceeEEE
Q 023018 212 ------DATLRVWNPKSGENIHVI 229 (288)
Q Consensus 212 ------dg~i~i~d~~~~~~~~~~ 229 (288)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6788999984 6655543
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=4e-15 Score=123.11 Aligned_cols=209 Identities=15% Similarity=0.219 Sum_probs=139.1
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-Cee--eEeeccccCcEEEEEEecCCCEEEEEe-CCCe
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATG-GGDDKGFFWRINQ-GDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGL 130 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 130 (288)
.++.+. +.+....++++| ++++|+++ ..++.|.+|++.. ++. +.... .......++|+|++++|++++ .++.
T Consensus 27 ~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 334443 235577899999 56665544 5578899999973 332 22222 233457899999999888776 4889
Q ss_pred EEEEeCCCCc----eeEEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEEE-----ee-ccCCCeEEEEE
Q 023018 131 VQIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNM-----FS-GHGSSVTCGDF 199 (288)
Q Consensus 131 i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~-~~~~~i~~~~~ 199 (288)
|.+|++.+.. ....+. +......++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999986432 222222 223467789999999886555 569999999976332211 11 12345678999
Q ss_pred cCCCCEEEEEeC-CCeEEEEeCCC--Cc--eeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 023018 200 TPDGKTICTGSD-DATLRVWNPKS--GE--NIHVIRGHPY---HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTG 268 (288)
Q Consensus 200 ~p~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~ 268 (288)
+|++++|++++. ++.|.+|++.. +. .+..+...+. .......+.++|++++|+++.. ++.|.+|++.+.
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 999999988876 89999999873 32 2333322111 1122346889999999998854 789999999643
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.5e-16 Score=122.47 Aligned_cols=201 Identities=17% Similarity=0.244 Sum_probs=154.4
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc-cCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
..-++.++++.|...|+++.|+| ..+.|++|+.|..-++|.. ..+ ++...+..++..++++.|+|..+.||+|+..
T Consensus 43 ~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 43 DLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred CCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 34678899999999999999999 7778899999999999998 333 3455566789999999999999999999999
Q ss_pred CeEEEEeCCCCcee----EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-----c-------------ccEEEE
Q 023018 129 GLVQIWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-----R-------------AAYLNM 186 (288)
Q Consensus 129 g~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~-------------~~~~~~ 186 (288)
..|.||-+....-- +.-+.+.+.|.++.|+|++-++++|+.|+.+++|..- . |.++..
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 99999987654321 1223456789999999999999999999999999641 0 233444
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC
Q 023018 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (288)
Q Consensus 187 ~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (288)
+....+.+..+.|+|+|..|+-.+.|+.+.+-|..... .+..+.. ..-+..++.|-.+... +.++.|
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~---~~lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT---AQLPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh---ccCCceeeEeecCCce-eecCCC
Confidence 54567889999999999999999999999999976553 2333332 2356677777654433 334444
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.2e-17 Score=122.96 Aligned_cols=157 Identities=21% Similarity=0.322 Sum_probs=128.0
Q ss_pred CCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCe----------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 64 SDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 64 ~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
.+.+.|..+.... .-++++|..+|.+.+||+.++. ....+..|..+|.++.|.+.-..=++|+.+-.+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 4667777755433 3467788899999999999873 333445699999999998766666788888889
Q ss_pred EEEeCCCC--c--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 132 QIWDPSSG--N--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 132 ~i~d~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
..|.+... . .........-.+..+..-|+++.+|+++.||.|++|..++..++..++.|...|.+++|+|+...++
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 99988643 2 1122222344588899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeC
Q 023018 208 TGSDDATLRVWNP 220 (288)
Q Consensus 208 ~~~~dg~i~i~d~ 220 (288)
+++.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=2.8e-18 Score=137.86 Aligned_cols=188 Identities=19% Similarity=0.272 Sum_probs=157.5
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (288)
|..+.|-. +..++|++.. ..++|||- .|..++.+..| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus 173 v~Dv~~LH-neq~~AVAQK-~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 173 VRDVTFLH-NEQFFAVAQK-KYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred hhhhhhhc-chHHHHhhhh-ceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence 44445554 5567776665 78999995 46667777755 578899999998889999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (288)
Q Consensus 147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (288)
...+.+..++-+|-+..+-+|...|+|.+|......++..+..|.++|.++++.+.|+|++|++.|..++|||++....+
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 88899999999999899999999999999999999998888899999999999999999999999999999999988766
Q ss_pred EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
.++.. ..+...+++|..| +++.+....|.||.
T Consensus 329 ~t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 329 HTYRT----PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ceeec----CCCcccccccccc--ceeeecCCeeeeeh
Confidence 66653 3456678888654 34445666899995
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.7e-16 Score=132.27 Aligned_cols=160 Identities=24% Similarity=0.379 Sum_probs=130.4
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (288)
.|+-.++|.+++| .++++|+|..||+|.+|.-.. ......+..|...|++++|+++|.+|++|+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 4677799999999 899999999999999997543 12344567789999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-----------cCCCeEEEEEcCCCCEE
Q 023018 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~p~~~~l 206 (288)
+++ .+.++.-.++|..+.++|++...+....|..|.+....+.....++.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 566777888999999999999999999999999988755443333322 12345677888877777
Q ss_pred EEEeCCCeEEEEeCCCC
Q 023018 207 CTGSDDATLRVWNPKSG 223 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~ 223 (288)
+..+..|.|.+||+.+.
T Consensus 361 vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTD 377 (792)
T ss_pred eecCCCceEEEEecccc
Confidence 88888888888887653
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=7.8e-16 Score=121.43 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=146.4
Q ss_pred CEEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeeeEeeccc---------cCcEEEEEEecC--CCEEEEEeCCCeEE
Q 023018 66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMD--GQLLASGGLDGLVQ 132 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i~ 132 (288)
.+..+.-++....++|+|+.. ..+.|||+...+.+..-+.- .-.++++.|-+. ...||+++.-+.++
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 456666666677889999998 88999999988665554321 123567888876 67899999999999
Q ss_pred EEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCCEEEEEe
Q 023018 133 IWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
+||.+.+ +++..+.....+++++...|.++++++|..-|.+..||+++++.... +.+..+.|+++..+|...+|++++
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence 9999876 46777777888999999999999999999999999999999988776 888999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (288)
-|..|||+|+.+.+.+...- ....++++.+.++
T Consensus 310 LDRyvRIhD~ktrkll~kvY----vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVY----VKSRLTFILLRDD 342 (412)
T ss_pred cceeEEEeecccchhhhhhh----hhccccEEEecCC
Confidence 99999999999866554433 4556677777653
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-17 Score=135.86 Aligned_cols=168 Identities=26% Similarity=0.419 Sum_probs=135.9
Q ss_pred eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEE
Q 023018 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM 175 (288)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i 175 (288)
....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||....++++.+. +|...|.++.|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345688999999999999999999999999999999999888888775 6889999999999 5669999999999999
Q ss_pred EECCcc----------cEEEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee-------EEEcCCCcccc
Q 023018 176 WNADRA----------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTE 237 (288)
Q Consensus 176 ~d~~~~----------~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~ 237 (288)
||+... .....+..|...|..|+-.|++ ..+.+++.||+|+-||++....- ..+......--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999742 3445566788889999999977 78899999999999999863211 11111111223
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 023018 238 GLTCLTISA-DSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 266 (288)
...++..+| +..+|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 467889999 56789999999999999953
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.5e-15 Score=125.38 Aligned_cols=209 Identities=17% Similarity=0.196 Sum_probs=158.4
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe----------------------------ecccc------
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----------------------------IQGHK------ 107 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------~~~~~------ 107 (288)
+|....+.|..+|++..++|+|..--.|++||+........ +..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57788899999998888899999999999999975431110 01111
Q ss_pred -----CcEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc
Q 023018 108 -----DSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (288)
Q Consensus 108 -----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 181 (288)
..-.+++++. ... |++++....|+=+++..|+.+..+....+.++++..++-..+|++|+.+|.|-+||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 1123444442 333 344444556888899999999888888889999999999999999999999999999987
Q ss_pred cEEEEeec------cCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC--C
Q 023018 182 AYLNMFSG------HGS-----SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--S 248 (288)
Q Consensus 182 ~~~~~~~~------~~~-----~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 248 (288)
..+..+.. |.+ .|+++.|+.+|-.+++|+..|.+.|||+++.+++..-.. ....+|..+.|.+. +
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCC
Confidence 66655532 222 489999999999999999999999999999887655432 25678899999874 3
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 249 TLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 249 ~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
..|++. ....++|||-.+|+....+
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASI 310 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeec
Confidence 455544 5678999999999998876
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.5e-15 Score=129.60 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=130.5
Q ss_pred CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC
Q 023018 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (288)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (288)
+..|.+||..... ...+..+...+.+.+|+|+|++|+.++.+ ..|++||+.+++.... ....+....++|+|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987554 45566678889999999999999887643 4799999988754322 21222345689999999
Q ss_pred EEEEec-CCCeE--EEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-ceeEEEcCCCcccc
Q 023018 163 IVLAGS-EDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE 237 (288)
Q Consensus 163 ~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~ 237 (288)
.|++++ .+|.+ ++||+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++... .....+ . +..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~---~~~ 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G---GRG 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c---CCC
Confidence 888765 57765 455766655 344555666788899999999877655 5677788875432 222333 2 222
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--FQYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--~~~~~~~~~~d 285 (288)
....|+|+|+.|+..+.+ .+.+||+.+++..... .....+.|+||
T Consensus 336 --~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPd 382 (429)
T PRK01742 336 --YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTFLDESPSISPN 382 (429)
T ss_pred --CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCCCCCCceECCC
Confidence 356899999999887765 4667999998765433 22344556665
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.6e-16 Score=134.81 Aligned_cols=221 Identities=16% Similarity=0.238 Sum_probs=156.4
Q ss_pred CCEEEEEEcC-CCCcEEEEEeCCCeEEEEEccC-----CeeeEeecc-------ccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018 65 DEVYSVACSP-TDATLVATGGGDDKGFFWRINQ-----GDWASEIQG-------HKDSVSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 65 ~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (288)
..|+.+.+-. ++..++.+|+.||.|+||+--. .+.+....+ ..+.-.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4577777654 4567889999999999997432 223322221 11111345677666677777778899
Q ss_pred EEEeCCCCceeEEecc-CCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc---EEEEeeccCCC--eEEEEEcCCCC
Q 023018 132 QIWDPSSGNLKCTLEG-PGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSS--VTCGDFTPDGK 204 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~p~~~ 204 (288)
+|||.........+.. ....++++.-+. .|+.+++|..||.|++||.|... .+..++.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998877776653 334566665543 57899999999999999998653 56777788877 99999999665
Q ss_pred E-EEEEeCCCeEEEEeCCCCceeE--EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-------
Q 023018 205 T-ICTGSDDATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------- 274 (288)
Q Consensus 205 ~-l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------- 274 (288)
. |++|+.+|.|++||++...... .+..+....+.++++..+++..++++|+. +.|+||++... .+..+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccc
Confidence 5 9999999999999999742222 22221112335999999999999999988 99999998743 33322
Q ss_pred ----cceEEEEEeeccc
Q 023018 275 ----FQYTCVAYDLDFV 287 (288)
Q Consensus 275 ----~~~~~~~~~~df~ 287 (288)
....|++|.|-..
T Consensus 1348 ~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred cCcCCCcceeeecchhH
Confidence 3456777776543
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.2e-15 Score=125.19 Aligned_cols=192 Identities=15% Similarity=0.095 Sum_probs=134.8
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
..|.++|... .....+..+...+.+.+|+|+|+.|+..+. +..|.+||+.+++.. .+....+.+...+|+|+|+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3788888754 444556667889999999999998887753 468999999888654 34445556788999999997
Q ss_pred EEE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018 164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (288)
|+. .+.++ .|++||+.++.. ..+..+........|+|+|++|+..+. +| .|+++|+.++... .+.. ...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~---~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF---GGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec---CCC
Confidence 764 44454 488889987764 445555556678899999999887664 33 6888898766543 3332 234
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN--FQYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~--~~~~~~~~~~d 285 (288)
.+....|+|+|+.|+..+.+ ..|.+|++.++...... .....+.|+||
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spD 387 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPN 387 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCC
Confidence 45667899999998876543 36888998765543222 23456666665
No 219
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2e-14 Score=122.17 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=141.6
Q ss_pred EeecCCCCEEEEEEcCCCCc--EEEEEeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CC----
Q 023018 59 IFSGHSDEVYSVACSPTDAT--LVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG---- 129 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg---- 129 (288)
.+......+..-+|+|++.. ++++...+| .|++.++.+++..... ...+.....+|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 34445556778899995443 333554444 5777788776543332 23445567899999998876553 23
Q ss_pred eEEEEeCCCC---ceeEEeccCCCCEEEEEEcCCCCEEEEec-CCCe--EEEEECCc-ccEEEEeeccCCCeEEEEEcCC
Q 023018 130 LVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDST--VWMWNADR-AAYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 130 ~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~p~ 202 (288)
.+.+|++..+ +.........+.....+|+|+|+.|+..+ .+|. |+++++.. +.....+..+...+....|+|+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD 337 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD 337 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC
Confidence 3444676642 33333333333446789999999877665 4564 45555532 2334444444556778899999
Q ss_pred CCEEEEEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEe--
Q 023018 203 GKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVCCLN-- 274 (288)
Q Consensus 203 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~t~~~~~~~-- 274 (288)
|++|+..+.+ ..|.+||+.+++... +.. ....+....|+|+|+.|+.... ...|+++++.+++.....
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 9998876543 369999998886543 332 2234567899999988775433 357999999988766554
Q ss_pred -cceEEEEEeecc
Q 023018 275 -FQYTCVAYDLDF 286 (288)
Q Consensus 275 -~~~~~~~~~~df 286 (288)
......+|+|-|
T Consensus 414 ~g~~~~p~Ws~~~ 426 (428)
T PRK01029 414 SGEKRFPSWGAFP 426 (428)
T ss_pred CCcccCceecCCC
Confidence 234567777655
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=2.2e-14 Score=122.66 Aligned_cols=221 Identities=18% Similarity=0.215 Sum_probs=148.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCC--e
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG--L 130 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg--~ 130 (288)
.+.+..+...+...+|+| +++.|+.+... ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++ .
T Consensus 182 ~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 182 PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 455556777899999999 66666655433 4799999988765433 335556677999999997764 44444 5
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
|++|++.+++... +..+........|+|+++.|+..+. .+ .|+++++.+++.. .+..+......+.|+|++++|+
T Consensus 260 i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 260 IYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEE
Confidence 8899988775433 3334444556799999998876654 33 6888898776643 3443455677889999999999
Q ss_pred EEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEecceEEEE
Q 023018 208 TGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNFQYTCVA 281 (288)
Q Consensus 208 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~~~~~~~ 281 (288)
.++.++ .|.+||+.++.. ..+... .......|+|+++.|+..+.++ .+++.+. +|+....+.....-+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDV 411 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCc
Confidence 888776 799999987543 333321 1234568999999888776654 4556554 455555553334445
Q ss_pred Eeeccc
Q 023018 282 YDLDFV 287 (288)
Q Consensus 282 ~~~df~ 287 (288)
.+|+|+
T Consensus 412 ~~~~ws 417 (417)
T TIGR02800 412 REPAWS 417 (417)
T ss_pred CCCCCC
Confidence 566653
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=2.2e-17 Score=141.36 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=162.8
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
.......+||.+.|+.++.+. +..++|+++.|..|++|.+..+.++..+.+|.+.|++++|+|-. +.+.||++++
T Consensus 222 ~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 222 ARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred hhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 456678899999999999998 77899999999999999999999999999999999999999964 7788999999
Q ss_pred EeCCCCc--------------eeEEe----------------ccCCCCEEEEEEcCCCCEEEE-----------ecCCCe
Q 023018 134 WDPSSGN--------------LKCTL----------------EGPGGGVEWVSWHPRGHIVLA-----------GSEDST 172 (288)
Q Consensus 134 ~d~~~~~--------------~~~~~----------------~~~~~~i~~~~~~~~~~~l~~-----------~~~dg~ 172 (288)
||.+-.- ....+ ....-.+-.++|....-.+++ +-.+..
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence 9976110 00000 000011222333333323333 334556
Q ss_pred EEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (288)
Q Consensus 173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 251 (288)
+.+|++.++...+.+.+|...+..+.++|-. ....+++.||...|||+..|.+++.... ....+...+|+++|..+
T Consensus 377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---ccceeeccccCCCCceE
Confidence 8889999999999999999999999999954 4557889999999999999988877764 24557778999999999
Q ss_pred EEEeCCCcEEEEEcCCCcEEE
Q 023018 252 LSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 252 ~~~~~dg~i~iwd~~t~~~~~ 272 (288)
+....-|.++|.....++...
T Consensus 454 ~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred ecCCCCCceEEeccCCCcccc
Confidence 888888999998877665544
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.1e-15 Score=115.15 Aligned_cols=203 Identities=16% Similarity=0.258 Sum_probs=139.1
Q ss_pred eecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018 60 FSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (288)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (288)
..|| .+|+.++|++ ++..+++++. +..|.|||..++..+......-+.++-+.|+|++.+|+++.-|+..++|....
T Consensus 192 ~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 3455 6899999999 5666666654 67899999999887766655667888999999999999999999999997655
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc----cc-----------EEEEee---------ccCCCe
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR----AA-----------YLNMFS---------GHGSSV 194 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~-----------~~~~~~---------~~~~~i 194 (288)
...........+.|...+|+|.|++|+.++. |.-++|.+.- +. ++..+. .-.+.+
T Consensus 270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgea 348 (445)
T KOG2139|consen 270 SWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEA 348 (445)
T ss_pred cceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcc
Confidence 4433333344558999999999997776655 4444444321 00 111111 124678
Q ss_pred EEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCceeEEEc-CCCccccCeEEEEEcC---CCCEEEEEeCCCcEEE
Q 023018 195 TCGDFTPDGKTICTGSDDA--------TLRVWNPKSGENIHVIR-GHPYHTEGLTCLTISA---DSTLALSGSKDGSVHM 262 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i 262 (288)
.+++|.|.|.+|++.-..+ .|.+||.+....+.... +.. .......++|+| ++.+|..+=+.|.+.-
T Consensus 349 q~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i-~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 349 QCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMI-GGEYPAYISFGPLKNEGRLLSIAWSTGRIQR 427 (445)
T ss_pred ceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccc-cCCCCceEEeeecccCCcEEEEEeccCceEe
Confidence 9999999999999876544 36788887655444331 211 222345567776 5667766666777777
Q ss_pred EEcC
Q 023018 263 VNIT 266 (288)
Q Consensus 263 wd~~ 266 (288)
|++.
T Consensus 428 ypl~ 431 (445)
T KOG2139|consen 428 YPLT 431 (445)
T ss_pred eeeE
Confidence 7653
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1e-15 Score=134.42 Aligned_cols=199 Identities=21% Similarity=0.386 Sum_probs=150.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCc---ee
Q 023018 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGN---LK 142 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~---~~ 142 (288)
.-+.|..+.+.++++|. -..|+|||....+.+..+. +....|+++.-+ ..|+.|++|..||.|++||.+... .+
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 34567776676666654 5899999999877777665 344566766554 356899999999999999987543 45
Q ss_pred EEeccCCCC--EEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE--Eeecc---CCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 143 CTLEGPGGG--VEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN--MFSGH---GSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 143 ~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~---~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
...+.|... |..+.+.++|- .|++|+.+|.|++||+|...... .+..| ++..+++..+++...+++|+. +.
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 666777776 99999999766 59999999999999999842222 22222 235899999999999999998 99
Q ss_pred EEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 215 LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
|.||++. |+.+..+...+ .....+.+++|+|..-+|++|+.|..|.||....++
T Consensus 1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999986 44444443211 134567999999998899999999999999877654
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.3e-15 Score=123.41 Aligned_cols=193 Identities=21% Similarity=0.326 Sum_probs=139.4
Q ss_pred CeEEEEEccCCeeeE------eeccccCcEEEEEEe-----cCCCEEEEEeCCCeEEEEeCCCCceeEEec----cCCCC
Q 023018 87 DKGFFWRINQGDWAS------EIQGHKDSVSSLAFS-----MDGQLLASGGLDGLVQIWDPSSGNLKCTLE----GPGGG 151 (288)
Q Consensus 87 g~i~iw~~~~~~~~~------~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~ 151 (288)
..+++|+++.+..+. .+.+ ..+ +|-.|+ |.+--+++|-.-|.|.+.|....+..+.+. .....
T Consensus 144 ~~lyv~~~~g~~~~~~pi~k~~y~g-t~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~kts 221 (636)
T KOG2394|consen 144 RELYVYSYRGAADLSKPIDKREYKG-TSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSS 221 (636)
T ss_pred CeEEEEEccCcchhccchhhhcccC-CCC-ceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccc
Confidence 468888887432111 1221 222 333442 455568888888999999877643322221 12367
Q ss_pred EEEEEEcCC-CCEEEEecCCCeEEEEECCc--------------c--------------cEEEEeeccCCCeEEEEEcCC
Q 023018 152 VEWVSWHPR-GHIVLAGSEDSTVWMWNADR--------------A--------------AYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 152 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~--------------~--------------~~~~~~~~~~~~i~~~~~~p~ 202 (288)
++++.|-|. ...++++-.+|.+++||..- + .++..+....+.|...+|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 999999994 44777777889999997531 1 112222233557889999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceE
Q 023018 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYT 278 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~ 278 (288)
|++||+.+.||.+||||..+.+++..+.. .-+...|++|+|||++|++|++|.-|.||.+..+++++.- ..+.
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999998777666655 5678999999999999999999999999999999999875 4566
Q ss_pred EEEEee
Q 023018 279 CVAYDL 284 (288)
Q Consensus 279 ~~~~~~ 284 (288)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 777775
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=6e-14 Score=120.24 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=135.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCC--e
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGG-GD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG--L 130 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg--~ 130 (288)
.+.+..+...+...+|+| +++.|+..+ .+ ..|.+|++.+++... +....+.+....|+|+|++|+. ...+| .
T Consensus 191 ~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 191 AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 455566778899999999 555554443 32 368999998876543 3323445567899999998774 44444 6
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
|++||+.+++.. .+..+........|+|+++.|+..+. + ..|+++++.+++.... ...........|+|+|++|+
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEE
Confidence 888899887654 34444455667899999998776654 3 3688888877764332 22223344578999999998
Q ss_pred EEeCC-C--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCc
Q 023018 208 TGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGK 269 (288)
Q Consensus 208 ~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~ 269 (288)
..+.. + .|.+||+.+++. ..+... .......|+|+|+.|+..+.+ ..|+++++..+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~-~~lt~~----~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSV-RILTDT----SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEccCCceEEEEEECCCCCE-EEccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 77643 3 588999988764 333321 112245899999988776543 357788875443
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.7e-14 Score=123.15 Aligned_cols=192 Identities=22% Similarity=0.273 Sum_probs=127.1
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.. ..|.+||+.+++... +....+.+...+|+|+|+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357777764 44444455577889999999999988877642 469999999886543 3333355678999999998
Q ss_pred EEE-ecCCCeEEEE--ECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCceeEEEcCCCcccc
Q 023018 164 VLA-GSEDSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVW--NPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 164 l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~ 237 (288)
|+. .+.+|...+| |+..+. ...+..+........|+|+|++|+..+. +|...|| ++.++....... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~----~g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF----TGS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec----CCC
Confidence 774 5667765555 555444 4445545555677889999998876654 4555555 555544332221 122
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
......|+|+|++|+..+.++ .|++||+.+++...... ....+.|+||
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spd 381 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPN 381 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCC
Confidence 234578999999998776554 69999999887654432 2345566655
No 227
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=6.2e-15 Score=126.15 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=131.1
Q ss_pred CeEEEEEccCC-eeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce--eEE----eccCCCCEEEEEEc
Q 023018 87 DKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL--KCT----LEGPGGGVEWVSWH 158 (288)
Q Consensus 87 g~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~----~~~~~~~i~~~~~~ 158 (288)
+.+.||++... .+...+. ....|++++|+|.. .+++.|+.+|.|.+||++.+.. ... ...|..++..+.|-
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 4444444 56789999999954 4778888999999999987765 222 23577889999997
Q ss_pred CCC--CEEEEecCCCeEEEEECCcccE-----------------------------------------------------
Q 023018 159 PRG--HIVLAGSEDSTVWMWNADRAAY----------------------------------------------------- 183 (288)
Q Consensus 159 ~~~--~~l~~~~~dg~i~i~d~~~~~~----------------------------------------------------- 183 (288)
.+. .-|++++.||.|..|+++.-..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 744 4499999999999998752110
Q ss_pred ----------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcC-CCCEE
Q 023018 184 ----------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISA-DSTLA 251 (288)
Q Consensus 184 ----------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 251 (288)
...+..|.++|+++.++|-+..++..+.|.+++||... ...++..+.. +...|++++||| ....+
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCceEE
Confidence 01122467789999999976666555559999999876 4444444443 556699999999 55678
Q ss_pred EEEeCCCcEEEEEcCC
Q 023018 252 LSGSKDGSVHMVNITT 267 (288)
Q Consensus 252 ~~~~~dg~i~iwd~~t 267 (288)
+++..+|.|.+||+..
T Consensus 458 ~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EEEcCCCceehhhhhc
Confidence 8888899999999964
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=6.1e-14 Score=119.63 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=130.3
Q ss_pred eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 164 (288)
.|.+||...... ..+..+...+.+.+|+|+|+.|+..+ .+..|.+|++.+++..... ...+....+.|+|+|+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence 688888875443 33444667899999999999888654 2457999999887643322 223335578999999988
Q ss_pred EEe-cCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEEcCCCccccC
Q 023018 165 LAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEG 238 (288)
Q Consensus 165 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (288)
+.. +.+| .|++||+.+++... +..+...+....|+|+|+.|+..+.. + .|+++|+.++... .+.. ....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCC
Confidence 765 4444 59999998876544 33344567889999999998777654 3 4566677766543 3322 2334
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
.....|+|+|++|+..+.+ ..|++||+.+++...... ....+.|+||
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpD 384 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPN 384 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCC
Confidence 5578899999988776543 358899999887654332 2234566665
No 229
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3e-15 Score=118.47 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=137.0
Q ss_pred eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC------CCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS------SGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (288)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 174 (288)
.+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++..... |.+.|.|++|....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 456799999999999999999999999999999975 3455555443 458899999999999999999999999
Q ss_pred EEECCcccEEEEeec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcC-CCCE
Q 023018 175 MWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTL 250 (288)
Q Consensus 175 i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~ 250 (288)
..|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+.... ......++-|+| ...+
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPAL 209 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCcee
Confidence 999999988877752 23489999999998999999999999999998765 333332221 456678889999 5678
Q ss_pred EEEEeCCCcEEEEEcCCCc
Q 023018 251 ALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 251 l~~~~~dg~i~iwd~~t~~ 269 (288)
|++.+..+-+-+||.+..+
T Consensus 210 i~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EEeccccCCCCceeecccc
Confidence 8889999999999998643
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2e-14 Score=122.98 Aligned_cols=192 Identities=17% Similarity=0.151 Sum_probs=131.8
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
..|.+||.... ....+..+...+.+.+|+|+++.|+.++. ...|++|++.+++.... ....+....+.|+|+|+.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 35888998644 34445557778999999999998888763 34799999988765433 333444567899999997
Q ss_pred EEE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018 164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (288)
|+. .+.+| .|++||+.+++. ..+..+.......+|+|+|++|+.++. +| .|+++++.+++...... ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~----~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF----QGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec----CCC
Confidence 764 44444 699999988764 344445555577899999999887764 44 47777887765433322 223
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
.....+|+|+|+.|+..+.++ .|++|++.+++...... ....+.|+||
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spd 389 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPN 389 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCC
Confidence 344689999999988765433 69999999887664332 2234455554
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.9e-13 Score=105.48 Aligned_cols=198 Identities=17% Similarity=0.258 Sum_probs=137.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeeeEeeccc--cCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCC
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGH--KDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSG 139 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~ 139 (288)
..+|.++.+.+ + .+++.- .+.|+||.+. +.+.++.+... ...+.+++-..+..+||.= -.-|.|.|-|+...
T Consensus 94 ~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 94 NSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 46788888876 3 344444 3789999998 44555554422 2334444433344455543 35699999999876
Q ss_pred ce--eEEeccCCCCEEEEEEcCCCCEEEEecCCCe-EEEEECCcccEEEEeec--cCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018 140 NL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDAT 214 (288)
Q Consensus 140 ~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~ 214 (288)
+. ...+..|.+.|.|++.+.+|..+|+++..|+ |+|||..++.++..++. ....|.+|+|+|+..+|++++..|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 65 4678899999999999999999999999998 79999999999998874 3457999999999999999999999
Q ss_pred EEEEeCCCCceeEE-----------EcC----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 215 LRVWNPKSGENIHV-----------IRG----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 215 i~i~d~~~~~~~~~-----------~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
|.||.++....... +.. .+...++..-++|..+.+.++..+.||..+-+-+
T Consensus 250 lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 250 LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 99998864321111 000 0012233445566666455666667776554443
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=4.3e-13 Score=111.45 Aligned_cols=191 Identities=18% Similarity=0.194 Sum_probs=139.4
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEc
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 158 (288)
++++-..+|.|.+.|..+.+.+.++......-..+.|+|+++++++++.||.|.++|+.+++.+.+++.... ...++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence 345666789999999999999999985544445578999999999999999999999999999999886554 7889999
Q ss_pred CCCCEEEEec-CCCeEEEEECCcccEEEEeecc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeE--
Q 023018 159 PRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH-- 227 (288)
Q Consensus 159 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~-- 227 (288)
++|+++++++ ..+.+.++|.++.++++.+... ...+..+..+|....++..-. .+.|.+.|......+.
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999988776 5799999999999988887642 346778888888886655554 5888888877654332
Q ss_pred EEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe
Q 023018 228 VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+. .........|+|++++++++ .....|-++|+.+++.+..+
T Consensus 167 ~i~----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 167 TIK----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eec----ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 332 34567788999999987664 55779999999999888765
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=6.5e-13 Score=110.38 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=141.4
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 132 (288)
.+.+..+......-..+.|+| +++++++++.||.|.++|+.+.+.+.++... .....++++++|+++++++ ..+.+.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred CeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence 455666665544434577898 7788888899999999999999999998754 4557899999999988775 689999
Q ss_pred EEeCCCCceeEEeccC---------------------------------------------------CCCEEEEEEcCCC
Q 023018 133 IWDPSSGNLKCTLEGP---------------------------------------------------GGGVEWVSWHPRG 161 (288)
Q Consensus 133 i~d~~~~~~~~~~~~~---------------------------------------------------~~~i~~~~~~~~~ 161 (288)
++|..+.+.++.+... ........|+|++
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 9999887766544211 0123445678888
Q ss_pred CEEEEe-cCCCeEEEEECCcccEEEEe-----------------------------------------------------
Q 023018 162 HIVLAG-SEDSTVWMWNADRAAYLNMF----------------------------------------------------- 187 (288)
Q Consensus 162 ~~l~~~-~~dg~i~i~d~~~~~~~~~~----------------------------------------------------- 187 (288)
++++++ .....|.++|.++++.+..+
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 876554 44567777777665443221
Q ss_pred --eccCCCeEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--Cc
Q 023018 188 --SGHGSSVTCGDFTPDGKTICTG----SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GS 259 (288)
Q Consensus 188 --~~~~~~i~~~~~~p~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~ 259 (288)
.....+ .-+..+|+++++++. ...+.|.++|.++.+....+... ....+..+.|+++|+.+..+..+ |.
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~--~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG--PGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH--HT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc--CCCcEeccEECCCCCEEEEEEecCCCE
Confidence 111222 456778999999887 44578999999998777776531 22348899999999977665443 46
Q ss_pred EEEEEcCCCcEEEEec
Q 023018 260 VHMVNITTGKVCCLNF 275 (288)
Q Consensus 260 i~iwd~~t~~~~~~~~ 275 (288)
|.+||..|.+.++.+.
T Consensus 341 i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 341 IVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCcEEEEEEE
Confidence 9999999999998874
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.6e-13 Score=116.30 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=132.2
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEE-EeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCCe--E
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVAT-GGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGL--V 131 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--i 131 (288)
+.+..+...+...+|+| +++.|+. ...++ .|++|++.+++... +....+......|+|+|+.|+. .+.+|. |
T Consensus 211 ~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 34555667888999999 5555544 43333 58888988776432 2222333457899999997765 455664 7
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 208 (288)
+++|+.+++.. .+..+.......+|+|+++.|+..+. + ..|+++|+.+++.... ..........+|+|+|++|+.
T Consensus 289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 289 YVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 78888877644 34444445677899999998876653 3 3577788877764332 222223345689999999877
Q ss_pred EeCC-C--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcEEEEe
Q 023018 209 GSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVCCLN 274 (288)
Q Consensus 209 ~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~t~~~~~~~ 274 (288)
.+.+ + .|.++|+.++... .+.... ......|+|+|+.|+..+. +| .++++++ +|+....+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 6553 3 4666788877643 333211 1123479999988776554 33 3777887 55555555
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.1e-13 Score=114.79 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=156.1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEe------c--------------CCCEEEEEeCCCeEE
Q 023018 76 DATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFS------M--------------DGQLLASGGLDGLVQ 132 (288)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~i~ 132 (288)
...++|....||.+++|+..+++....+.. ..+..++..|. | +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 667899999999999999999887776643 23445555553 2 233678888899999
Q ss_pred EEeCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 133 IWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 133 i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
+|+...++....+. .|.+.+.++.++.+-..|.+++.|+.+..|+......++.++.....+.+++.+|++..|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999999888776 5888999999999999999999999999999999999999998889999999999999999887
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 023018 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----STLALSG-SKDGSVHMVNITT 267 (288)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~t 267 (288)
+.|.+||+.+++.+..|.+ |.++|+++.|... |.+++++ ..+..|.+|-+..
T Consensus 164 --~~ik~~~~~~kevv~~ftg---h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTG---HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecC---CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6899999999999999998 8899999999876 5665544 4456677776654
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.6e-14 Score=119.40 Aligned_cols=194 Identities=18% Similarity=0.337 Sum_probs=153.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (288)
..++++...-.+++.|+ ...|+-.++..|+.+..+....+.++++..++-..+|++|+.+|.|-.||.+.......+..
T Consensus 137 RDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 44555543444554444 46788899999999999988889999999999988999999999999999988766555532
Q ss_pred ------CCC-----CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCC--CCEEEEEeCCC
Q 023018 148 ------PGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPD--GKTICTGSDDA 213 (288)
Q Consensus 148 ------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~--~~~l~~~~~dg 213 (288)
+.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-. ....+|..+.|.+. +..|++. ...
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chH
Confidence 222 49999999999999999999999999999988765433 34568999999885 3445554 456
Q ss_pred eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.++|||-.+|+....+. ....+..+|+-|++-+++++-.++.+..|=+..
T Consensus 295 ~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred HhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 78999999999888777 456689999999998999998888777765543
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=106.21 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=147.4
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----------
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---------- 128 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 128 (288)
.+...+.++..++|+|++..+|.+...+-+|.+|.+.+.+... ++-.+..+..++|+|+|++.+.+++-
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 4455677899999999666888888999999999998866443 33234556888999999987776542
Q ss_pred --------------------------CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018 129 --------------------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (288)
Q Consensus 129 --------------------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 182 (288)
..+.+||.--.-.+..+. ..-++..++|+|.+++|++|+.|+.+++.+--+.+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 123333321111111122 23468999999999999999999999887643222
Q ss_pred EEE------------------------------------------------------------Eee------ccCCCeEE
Q 023018 183 YLN------------------------------------------------------------MFS------GHGSSVTC 196 (288)
Q Consensus 183 ~~~------------------------------------------------------------~~~------~~~~~i~~ 196 (288)
+.. .++ .....+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 110 001 12345677
Q ss_pred EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 197 GDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 197 ~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
++|++|..++++-.. -..+-+||++..+....+. ...+|....|+|....|+.+....++++|......++...
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 899999999988764 2468899998776655554 5678999999998888888888888999998876666554
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=3e-14 Score=125.04 Aligned_cols=188 Identities=21% Similarity=0.358 Sum_probs=153.1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcE-EE---EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC
Q 023018 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV-SS---LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (288)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i-~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 151 (288)
....++.++.+..+.+|+...+.....+....... .+ +-++++.-++++|+.-+.|.+|+.........+.+|.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 45677788888999999998877766665332211 11 223445558999999999999998754444468899999
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (288)
Q Consensus 152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (288)
|.++.|+-+|+++++.+.|.++++|++.+.+... ...+|...++.++|.|. ++++++.|-+.++|+.. +..+..+.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~ 254 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD 254 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence 9999999999999999999999999999987665 66789999999999988 99999999999999754 55555666
Q ss_pred CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
+| ....+..++..++...+++++.||.+++|++.+.
T Consensus 255 ~h--~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 255 EH--SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hh--hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 65 4567999999999999999999999999998753
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.62 E-value=5.2e-13 Score=114.17 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=131.7
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
..|.++|..... ...+..+...+...+|+|++++|+.++.. ..|++|++.+++.... ..+.+.+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 357788875433 34454566678899999999998887643 4799999988865433 334455677999999987
Q ss_pred EEEe-cCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEEcCCCcccc
Q 023018 164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 164 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (288)
|+.. +.++ .|++|++.++... .+..+........|+|++++|+.++.. + .|+++|+.+++... +.. +..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCC
Confidence 7654 4443 5999999877543 344444445677899999988766543 3 68888988766433 332 334
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
......|+|++++|+.++.++ .|.+||+.++....... ....+.|+||
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spd 375 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPN 375 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCC
Confidence 566789999999998887765 89999998876543331 2233455554
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.9e-11 Score=101.60 Aligned_cols=217 Identities=16% Similarity=0.309 Sum_probs=141.0
Q ss_pred CCCEEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeeeEe---ec----------cccCcEEEEEEecCCCEEEEEe-C
Q 023018 64 SDEVYSVACSPTDATLVATG-GGDDKGFFWRINQ-GDWASE---IQ----------GHKDSVSSLAFSMDGQLLASGG-L 127 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~-~ 127 (288)
...-..++++| ++++|+++ ..+|.|.++++.. +..... +. ......+++.|+|+++++++.. .
T Consensus 86 g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 34456789999 45555554 5689999999987 333222 11 1234678999999999887764 3
Q ss_pred CCeEEEEeCCCCc--ee--EEec-cCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECC--ccc--EEEEeecc------C
Q 023018 128 DGLVQIWDPSSGN--LK--CTLE-GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNAD--RAA--YLNMFSGH------G 191 (288)
Q Consensus 128 dg~i~i~d~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~------~ 191 (288)
...|.+|++.... +. ..+. ......+.+.|+|+++++++.. .++.|.++++. ++. .+..+... .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 4589999987654 32 1222 3456789999999999776654 57889999887 332 23332211 1
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC--CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEc--
Q 023018 192 SSVTCGDFTPDGKTICTGSD-DATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNI-- 265 (288)
Q Consensus 192 ~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~-- 265 (288)
.....|+++|+|++|+++.. .+.|.+|++. ++. +..+..........+.+.++|+|++|++++. ++.|.+|++
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 25788999999999988764 6689999983 333 2222222113445899999999999998774 678999876
Q ss_pred CCCcEEEEe-----cceEEEEE
Q 023018 266 TTGKVCCLN-----FQYTCVAY 282 (288)
Q Consensus 266 ~t~~~~~~~-----~~~~~~~~ 282 (288)
.+|++...- ....|+.|
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 577655443 45566654
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=3.7e-13 Score=102.87 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=158.8
Q ss_pred CCCEEEEEEcC--CCCc-EEEEEeCCCeEEEEEccCCeeeEeecccc------CcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 64 SDEVYSVACSP--TDAT-LVATGGGDDKGFFWRINQGDWASEIQGHK------DSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 64 ~~~v~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
.+.+..+.|.. .++. .++-+...|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45577777764 2344 56677788999999887655444443321 124578889989999999999999966
Q ss_pred eCCCCceeE--EeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCc-ccEEEE-eeccCCCeEEEEEcC-CCCEEEE
Q 023018 135 DPSSGNLKC--TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-AAYLNM-FSGHGSSVTCGDFTP-DGKTICT 208 (288)
Q Consensus 135 d~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~~p-~~~~l~~ 208 (288)
+........ .++.|.-.+....|+. +.+++++|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 665554443 6788998999999987 456899999999999999994 344433 556889999999887 6789999
Q ss_pred EeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-----EEEEecceEEEE
Q 023018 209 GSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK-----VCCLNFQYTCVA 281 (288)
Q Consensus 209 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~-----~~~~~~~~~~~~ 281 (288)
|+.|-.|++||.++ ++++..-. ..++|+.+.++|. ...|++++.-.-.+|.+...+. .......+.+++
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~ 304 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC 304 (339)
T ss_pred eccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee
Confidence 99999999999994 45544333 4588999999993 2333444444457777776543 333447788888
Q ss_pred Eeecc
Q 023018 282 YDLDF 286 (288)
Q Consensus 282 ~~~df 286 (288)
|..||
T Consensus 305 YG~DW 309 (339)
T KOG0280|consen 305 YGGDW 309 (339)
T ss_pred ecccc
Confidence 88887
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.8e-15 Score=120.15 Aligned_cols=213 Identities=21% Similarity=0.312 Sum_probs=153.0
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--------------------------------
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-------------------------------- 102 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------------- 102 (288)
.....|.+|.+.|..+.|+. .+..+++|+.|..|.+||+..++.+..
T Consensus 133 ~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 44667788999999999998 888999999999999999865443222
Q ss_pred ----------------eccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEec---cCCC---CEEEEEEcC
Q 023018 103 ----------------IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLE---GPGG---GVEWVSWHP 159 (288)
Q Consensus 103 ----------------~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~~~~~~ 159 (288)
+..|.++|.-++.-|... .|.+++.|+.+.-+|++.+.....+. .+.. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 234666777777776554 46777778888877877664333222 1222 567888888
Q ss_pred CC-CEEEEecCCCeEEEEECCcccE------EEE----------------------------------------------
Q 023018 160 RG-HIVLAGSEDSTVWMWNADRAAY------LNM---------------------------------------------- 186 (288)
Q Consensus 160 ~~-~~l~~~~~dg~i~i~d~~~~~~------~~~---------------------------------------------- 186 (288)
.. ..+++++.|-.+++||.+.-.. +..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 44 4888899999999998764211 010
Q ss_pred ---------------eeccCC--CeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018 187 ---------------FSGHGS--SVTCGD-FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (288)
Q Consensus 187 ---------------~~~~~~--~i~~~~-~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (288)
+++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++.++.+.+. ..-|+||.-+|.-
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD---r~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD---RHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc---cceEeccCCCCCC
Confidence 222221 122222 3455678999999999999999999988888773 3478999999988
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEE
Q 023018 249 TLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 249 ~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
.+|++++-|..|+||...+.+..
T Consensus 449 PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred chhhccCCccceeeecCCccccc
Confidence 89999999999999998665544
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=6.7e-14 Score=108.57 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=142.9
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeEEecc
Q 023018 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEG 147 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 147 (288)
-++|+| +++++|+++.- .+.|-|..+.+..+.+.. -..|..+.|..+.-+++++ ..++.|.+|++...+-...+..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 367999 88999998864 888999888776665553 4567778999888766655 6788999999999988888888
Q ss_pred CCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC-------------
Q 023018 148 PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA------------- 213 (288)
Q Consensus 148 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg------------- 213 (288)
...++.+++|+|+|+.| .+...+-.|.+|.+.+.+.... +-.+..+..++|+|+|++.+.++.-.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 88899999999999755 4556688999999987654432 22344567788899888876664321
Q ss_pred -----------------------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018 214 -----------------------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 214 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
.+.+||.--...+.... ..-++..+.|+|.+++|++|+.|+.+++.+--|-+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 23333322111111221 235688899999999999999999999977666554
Q ss_pred EE
Q 023018 271 CC 272 (288)
Q Consensus 271 ~~ 272 (288)
..
T Consensus 245 f~ 246 (447)
T KOG4497|consen 245 FG 246 (447)
T ss_pred hh
Confidence 43
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.1e-12 Score=109.74 Aligned_cols=191 Identities=16% Similarity=0.121 Sum_probs=128.0
Q ss_pred eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 164 (288)
.|.++|...... ..+..+...+....|+|+|++|+..+.+ ..|.+|++.+++... +....+......|+|+|+.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 477777765443 4444567788999999999988776533 469999998886543 33333445678999999987
Q ss_pred EE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccC
Q 023018 165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (288)
Q Consensus 165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (288)
+. ...+| .|++||+.++... .+..+........|+|+|+.|+..+. +| .|+++++.+++....... ...
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----GNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----CCC
Confidence 74 44444 6889999887643 34445555667889999998876654 33 588888887764333221 122
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
.....|+|+|+.|+..+.. + .|.+||+.+++...... ......|+||
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spd 384 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPN 384 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCC
Confidence 3456899999998876543 3 58899999887644332 2223455554
No 245
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=3.6e-13 Score=120.27 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=133.8
Q ss_pred CeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018 97 GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (288)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 168 (288)
|..+..+..|...+..++.++.. .+|++|+.||+|++|+.+.- +...++....+++.++.+.+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 56777788899888888888654 89999999999999998642 23334444567899999999999999999
Q ss_pred CCCeEEEEECCcc--c-----EEEEeeccC-CC-eEEEEEcC-CCC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018 169 EDSTVWMWNADRA--A-----YLNMFSGHG-SS-VTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 169 ~dg~i~i~d~~~~--~-----~~~~~~~~~-~~-i~~~~~~p-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 237 (288)
.||.|.+.++... . +.+....+. +. +..-++.. .+. .|+.+..-+.|..||+++......++... ..+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence 9999999998652 1 112222222 22 33333433 334 67888889999999999877666665433 446
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.|++++.+|.+++++.|+..|.+.+||++=+.++..-
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 7999999999999999999999999999988777654
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9.8e-12 Score=106.61 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=119.2
Q ss_pred eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-C--CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-D--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 164 (288)
.|.++|...... ..+..+...+.+..|+|+|++|+..+. + ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 566777655433 344456778889999999998887653 2 3688999988765332 2223334578999999977
Q ss_pred EE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccC
Q 023018 165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (288)
Q Consensus 165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (288)
+. .+.+| .|+++|+.+++. ..+..+........|+|++++|+..+. ++ .|+++|+.+++...... ....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCC
Confidence 65 45555 488889887764 344445555677899999998876653 33 57777887776543322 1122
Q ss_pred eEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcEEE
Q 023018 239 LTCLTISADSTLALSGSK-DG--SVHMVNITTGKVCC 272 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~t~~~~~ 272 (288)
....+|+|+|++|+..+. ++ .|.++|+.+++...
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 345689999998877654 33 56778888887543
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=8.2e-14 Score=128.35 Aligned_cols=195 Identities=12% Similarity=0.243 Sum_probs=158.6
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (288)
+.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..+.. -...|+.+.|+.+|+.+.++..||.+.+|.+. .
T Consensus 2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 334567888888884 45666999999999999999888877652 33789999999999999999999999999876 6
Q ss_pred ceeEEeccCCCCEEEEEEcCCCCEEEEec---CCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
+.....+.|........|-. ..+++++ .++.+.+||.--. .++. +.|.+.++++++.|..+.|++|+.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 67777788888888888864 5667664 4688999997532 2334 67999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.|++||++..+.++.++. +. ...++++|+..|.|+||++..-..+.++
T Consensus 2359 ~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred cEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999998777666552 34 4568899999999999999988777665
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=1.9e-10 Score=93.85 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=140.8
Q ss_pred EcCCCCcEEEEEe---------CCCeEEEEEccCCeeeEeeccccC-------cEEEEEEecCCCEEEEEe-C-CCeEEE
Q 023018 72 CSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASGG-L-DGLVQI 133 (288)
Q Consensus 72 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~-dg~i~i 133 (288)
++|++..+.++.+ .+..|.+||..+.+.+..+..... .-..++++|+|++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8995554555555 588999999999999888763222 224788999999988776 3 689999
Q ss_pred EeCCCCceeEEeccCCC-------------------------------CEEEE--------------EEcC-CCCEEEEe
Q 023018 134 WDPSSGNLKCTLEGPGG-------------------------------GVEWV--------------SWHP-RGHIVLAG 167 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~-------------------------------~i~~~--------------~~~~-~~~~l~~~ 167 (288)
.|+.+++.+..+..+.. ..... .|.+ +++++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99998877665432110 01111 1223 66666666
Q ss_pred cCCCeEEEEECCcc-----cEEEEeec-------cCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCce
Q 023018 168 SEDSTVWMWNADRA-----AYLNMFSG-------HGSSVTCGDFTPDGKTICTGS----------DDATLRVWNPKSGEN 225 (288)
Q Consensus 168 ~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~p~~~~l~~~~----------~dg~i~i~d~~~~~~ 225 (288)
.. |.|.+.|+... .....+.. ....+..++++|+++++++.. ..+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 66 99999995432 22222221 123344599999999988843 124799999999999
Q ss_pred eEEEcCCCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018 226 IHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t~~~~~~~ 274 (288)
+..+. -...+..++++||++ +|++.+ .++.|.++|+.+++.++.+
T Consensus 292 i~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 292 LRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 98887 356789999999999 877666 5788999999999999987
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.1e-10 Score=94.33 Aligned_cols=220 Identities=19% Similarity=0.265 Sum_probs=142.4
Q ss_pred CCEEEEEEcCCCCcEEEEEeC----CCeEEEEEccCC--e--eeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEe
Q 023018 65 DEVYSVACSPTDATLVATGGG----DDKGFFWRINQG--D--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD 135 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d 135 (288)
.....++++| ++.+|++... .|.|..|.+... + .+............++++|++++|+++. .+|.|.+++
T Consensus 37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 3456688999 5666666655 579999998864 3 3333332334456799999999988886 589999999
Q ss_pred CCCC-ceeEE---ec----------cCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCccc--E--EEEee-ccCCCeE
Q 023018 136 PSSG-NLKCT---LE----------GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA--Y--LNMFS-GHGSSVT 195 (288)
Q Consensus 136 ~~~~-~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~--~~~~~-~~~~~i~ 195 (288)
+... ..... +. .......++.++|+++++++... ...|++|++.... + ...+. ......+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9873 33222 11 12345889999999998877643 4679999987654 2 12222 3456789
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCC--CCc--eeEEEcCCC---ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEc-
Q 023018 196 CGDFTPDGKTICTGS-DDATLRVWNPK--SGE--NIHVIRGHP---YHTEGLTCLTISADSTLALSGS-KDGSVHMVNI- 265 (288)
Q Consensus 196 ~~~~~p~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~- 265 (288)
.+.|+|+++++++.. .++.|.+|++. ++. .+..+...+ ........+.++|+|++|+++. ..+.|.+|++
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999987665 47789999887 442 222222211 1122578899999999988765 4678999999
Q ss_pred -CCCcEEEEe------cceEEEEEeec
Q 023018 266 -TTGKVCCLN------FQYTCVAYDLD 285 (288)
Q Consensus 266 -~t~~~~~~~------~~~~~~~~~~d 285 (288)
.+|++.... ...+.++++|+
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 344443322 33677777654
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=7.1e-14 Score=115.59 Aligned_cols=177 Identities=21% Similarity=0.361 Sum_probs=135.0
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-------CeeeEeeccccCcEEEEEEecCCCEEEE
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLAS 124 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 124 (288)
...-.+..+.||+..|.+++--. +.+.+++++.|++|++|.++. ..+..+++.|+.+|.++.|-.+.+++++
T Consensus 723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence 34455677889999999988766 677888999999999999864 3467788899999999999998888877
Q ss_pred EeCCCeEEEEeCCCCceeEEec--cCCCCEEEEEEcC--CCCEEEEe-cCCCeEEEEECCcccEEEEee-----ccCCCe
Q 023018 125 GGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNMFS-----GHGSSV 194 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i 194 (288)
+ ||-|++||.-.++.+..+. ...+.+..+..-+ +..++++| +...+|+++|.+.......++ +...-+
T Consensus 802 c--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred c--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 6 7889999988777665332 1222233333333 23344444 677899999999876655554 344568
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Q 023018 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 231 (288)
++++..|.|+.++++-..|.|.+.|.++|+.+..++.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 9999999999999999999999999999987765543
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.5e-12 Score=105.42 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=131.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeEEecc---CCCCEEEEEEc------C--------------CCCEEEEecCCCeE
Q 023018 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWH------P--------------RGHIVLAGSEDSTV 173 (288)
Q Consensus 117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~i 173 (288)
|...++|....||.+++|+...++....|.. -.+...+..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999999988777653 22344455542 1 22368888899999
Q ss_pred EEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018 174 WMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (288)
Q Consensus 174 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 251 (288)
.+|++..++....+. .|.+.|.++.++.+-..|++++.|+.+..|+...++.++.+.. ....+.+++.+||+.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCCEE
Confidence 999999998877776 5889999999999888999999999999999999888888776 56778999999999999
Q ss_pred EEEeCCCcEEEEEcCCCcEEEEecceEEEEE
Q 023018 252 LSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282 (288)
Q Consensus 252 ~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~ 282 (288)
++++ +.|++|++.+++.+.++.+|.+++-
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVR 188 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceE
Confidence 9886 6899999999999999955444333
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=7.9e-13 Score=116.31 Aligned_cols=147 Identities=22% Similarity=0.357 Sum_probs=126.8
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE-EeccCCC
Q 023018 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG 150 (288)
Q Consensus 72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~ 150 (288)
+++ +.-++++|+.-+.|.+|+......-..+.+|.+.|.++.|+.+|+++++.+.|.++++|++.+.+... ..-+|..
T Consensus 141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 344 66788999999999999998544444688999999999999999999999999999999999988766 5567999
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
++..++|+|+ .+++++.|-+.++|+. .+..+..+..|. ..++.++..+....+++++.||.+++|++..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999998 9999999999999976 455566777765 4789999999888999999999999999753
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=3.4e-12 Score=99.72 Aligned_cols=214 Identities=17% Similarity=0.282 Sum_probs=157.6
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeec-cccCcEEEEEEecCCCEEEEEeCCC
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
.....++.+.||.+.|++...-| ...-+++.+.|.+++||--.+ ++.-..+. ....+++++.+.+....|++|-..|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 34556788999999999999998 566677999999999997554 44333332 2356889999999999999999999
Q ss_pred eEEEEeCC----CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEE------------------------------
Q 023018 130 LVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM------------------------------ 175 (288)
Q Consensus 130 ~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i------------------------------ 175 (288)
++.-+.+. .....+....|...+..+-|+....++++.+.|..+.-
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 99888653 22334444556667777777665556666555443221
Q ss_pred ---------EEC--CcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEE
Q 023018 176 ---------WNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLT 243 (288)
Q Consensus 176 ---------~d~--~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~ 243 (288)
..+ ..-.++.++.+|...+++++|.|....|++|..|..+.+||+....- ...+.+ |...|..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---h~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---HNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---chhhhhhhh
Confidence 111 11234566778999999999999999999999999999999864332 223333 778888888
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 244 ISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
..+.-+.|++++.||.|.+|+++..+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecccee
Confidence 88878899999999999999998654
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.1e-10 Score=96.18 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=127.8
Q ss_pred CEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eC--CCeEEEEeCCCC
Q 023018 66 EVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GL--DGLVQIWDPSSG 139 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~--dg~i~i~d~~~~ 139 (288)
.+....|+|++..+++..+. ...|+++|+.+++...... ..+......|+|+|+.|+.. +. +..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999954443554333 3569999998876554443 45556678899999876644 33 357888898777
Q ss_pred ceeEEeccCCCCEEEEEEcCCCCEEEEecCC-C--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC----
Q 023018 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---- 212 (288)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---- 212 (288)
+.. .+..+........|+|+|+.|+..+.. + .|+++|+.+++..+.... ... ...|+|+|++|+..+..
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 643 333333334456899999977776642 2 688889987765443321 111 24899999998776643
Q ss_pred -----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEE
Q 023018 213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCC 272 (288)
Q Consensus 213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~ 272 (288)
..|.+.|+.++.. ..+... .......|+|||+.|+..... ..+.+.++...+...
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 3688889987764 334321 122357899999987765543 247778876544443
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=89.66 Aligned_cols=208 Identities=12% Similarity=0.084 Sum_probs=141.1
Q ss_pred EEEEEcCC----CCcEEEEEeCCCeEEEEEccCCeee-EeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCce
Q 023018 68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (288)
Q Consensus 68 ~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 141 (288)
+.+.|-|. .-.+||.|+..|...+|...+.+.. .....|...|+-+.=.-+ ...+..++.|.++++.++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34566662 3357889999999999999865433 223334333322111111 22466777888888887765543
Q ss_pred eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-c-EEEEe-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-A-YLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (288)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~-~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~ 218 (288)
...+....-.+.+++++++++++++.+....|..|.+... . .+... ......-.+..|+.....+|++..||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 3333223234889999999999999999999999988653 2 22212 2233344677899988899999999999999
Q ss_pred eCCCCceeEEE--cCCCccccCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018 219 NPKSGENIHVI--RGHPYHTEGLTCLTISADS--TLALSGSKDGSVHMVNITTGKVCCLNF 275 (288)
Q Consensus 219 d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~t~~~~~~~~ 275 (288)
|++........ ...+.|.+.++.+.|++.| .+|+..-.-+.+.+.|+++++-...+.
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 99976543322 1222388999999999865 456665567899999999998877763
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=6.4e-11 Score=90.86 Aligned_cols=187 Identities=15% Similarity=0.260 Sum_probs=137.5
Q ss_pred CCCeEEEEEccCCeeeE--eec-cccCcEEEEEEec---CCC-EEEEEeCCCeEEEEeCCCCceeEEeccCC------CC
Q 023018 85 GDDKGFFWRINQGDWAS--EIQ-GHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG------GG 151 (288)
Q Consensus 85 ~dg~i~iw~~~~~~~~~--~~~-~~~~~i~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~ 151 (288)
..|.+.+|++...+... .++ .....+..+.|.. ++. .++-+...|.|.+|..........+++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34789999988765433 222 2345677888863 444 56667788999999876554444444321 12
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV 228 (288)
Q Consensus 152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 228 (288)
..++.|++.+..++++..+|.+.+.+...... ++.++.|...++...|+. +.+.+++|+.|+.+..||++... ...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 56788999999999999999999766655543 447889999999999987 56789999999999999999322 233
Q ss_pred EcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEE
Q 023018 229 IRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVCC 272 (288)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t-~~~~~ 272 (288)
+.....|..+|.++.-+| .+.+|++|+.|-.|++||.++ ++++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 333344888999998887 788999999999999999994 55554
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.1e-10 Score=95.17 Aligned_cols=200 Identities=18% Similarity=0.263 Sum_probs=137.8
Q ss_pred CCCCEEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCC-EEEEE--eCC--
Q 023018 63 HSDEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQ-LLASG--GLD-- 128 (288)
Q Consensus 63 h~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~--~~d-- 128 (288)
|...|+.+.++|. ....+|+ .+.-+.|+||.+........+ ......=..+.|++-|. +|+.+ .-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 5677999999994 2345544 355678999998732211111 11122234588988776 22222 222
Q ss_pred -------CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE--ecCCCeEEEEECCcccEEEEeeccCCCeEEEEE
Q 023018 129 -------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA--GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199 (288)
Q Consensus 129 -------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 199 (288)
.+++++++........+. ..++|.++.|+|+++.+++ |-.-..+.|||++ +.++..+ ..++-.++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEE
Confidence 468888877333333333 5789999999999986665 4456789999985 5556555 4677889999
Q ss_pred cCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcE
Q 023018 200 TPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKV 270 (288)
Q Consensus 200 ~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~t~~~ 270 (288)
+|.|++|+.++- -|.|-|||+.+.+++..+.. ..-+-+.|+|||.++++++. |+.++||+.. |+.
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~ 393 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSL 393 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cce
Confidence 999999988774 57899999998777766653 33456799999999998865 6789999975 554
Q ss_pred EE
Q 023018 271 CC 272 (288)
Q Consensus 271 ~~ 272 (288)
+.
T Consensus 394 l~ 395 (566)
T KOG2315|consen 394 LH 395 (566)
T ss_pred ee
Confidence 44
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.42 E-value=2.2e-09 Score=87.72 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=138.1
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC----------CCeEEEEeCCCCceeEEeccCCC------
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------ 150 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~------ 150 (288)
++|.+.|..+.+.+..+..-..+- .+ ++|+++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988887544443 34 9999998777654 78999999999999988875322
Q ss_pred -CEEEEEEcCCCCEEEEec-C-CCeEEEEECCcccEEEEeeccC-------------------------------CCeEE
Q 023018 151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHG-------------------------------SSVTC 196 (288)
Q Consensus 151 -~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~-------------------------------~~i~~ 196 (288)
....++++|+|++|++.. . +..|.++|+.+++.+..+.... .....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 234789999999999876 3 6889999998877655432100 00111
Q ss_pred E--------------EEcC-CCCEEEEEeCCCeEEEEeCCC-----CceeEEEcCC----CccccCeEEEEEcCCCCEEE
Q 023018 197 G--------------DFTP-DGKTICTGSDDATLRVWNPKS-----GENIHVIRGH----PYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 197 ~--------------~~~p-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~ 252 (288)
. .|.+ ++.++++... |.|.+.|+.. ...+..+... ......+.-++++|+++.|+
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1234 6777777665 9999999543 2233332211 11334455599999998888
Q ss_pred EEe----------CCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018 253 SGS----------KDGSVHMVNITTGKVCCLN---FQYTCVAYDLD 285 (288)
Q Consensus 253 ~~~----------~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d 285 (288)
+.. ..+.|.++|+.+++.+..+ .....+++++|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D 309 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD 309 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC
Confidence 743 1257999999999999987 66788888886
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=5.8e-10 Score=104.38 Aligned_cols=203 Identities=10% Similarity=0.097 Sum_probs=135.6
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-----------------cCcEEEEEEec-CCCEEEEEeCC
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-----------------KDSVSSLAFSM-DGQLLASGGLD 128 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d 128 (288)
-..+++.+.++.++++-...+.|+++++.++.. .++.+. -..-..++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 467888874343444445567899999876543 232110 01225789999 45566666778
Q ss_pred CeEEEEeCCCCceeEEecc---------------CCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEee----
Q 023018 129 GLVQIWDPSSGNLKCTLEG---------------PGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS---- 188 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---- 188 (288)
+.|++||..++.... +.+ .-.....++++|++. ++++-+.++.|++||+.++.......
T Consensus 705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 999999987765432 111 112356799999988 44555667999999998764321110
Q ss_pred ---------c--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC----------CccccCeEE
Q 023018 189 ---------G--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----------PYHTEGLTC 241 (288)
Q Consensus 189 ---------~--------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~ 241 (288)
. .-.....++++++|+.+++-+.++.|++||..++......... .........
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 0 0113468899999998888888999999999876554332110 001235678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 242 LTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
++++++|+++++-+.++.|++||+.+++..
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 999999999888889999999999998763
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1e-10 Score=99.65 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=112.5
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCC----eEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEE-
Q 023018 64 SDEVYSVACSPTDATLVATGGGDD----KGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIW- 134 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~- 134 (288)
.+.....+|+|++..++++...+| .+.+|++..+ ................+|+|+|+.|+..+ .+|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 344567899994444544443333 3444676542 32333322223446789999999877665 46655555
Q ss_pred -eCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 135 -DPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 135 -d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
++.. +.....+......+....|+|+|+.|+..+.. ..|++||+.+++... +......+....|+|+|+.|+..
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEE
Confidence 4432 23334444444567789999999988876543 469999998887543 33233456788999999988754
Q ss_pred eC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018 210 SD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (288)
Q Consensus 210 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (288)
.. ...|+++|+.+++...... ....+...+|+|-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~Lt~----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRKIVI----GSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEEeec----CCCcccCceecCCC
Confidence 43 3468899998776544443 23445667888743
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=4.3e-11 Score=93.69 Aligned_cols=158 Identities=18% Similarity=0.352 Sum_probs=123.0
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc----CCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe----
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN----QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD---- 135 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d---- 135 (288)
..+++++++.+ ....|+.|-..|++.-+.+. .....+.+..|...+..+.|+....++++.+.|..+.---
T Consensus 68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 46789999998 78889999999999888764 3445555667888888888876666777766654432111
Q ss_pred -------------------------------------CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 023018 136 -------------------------------------PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (288)
Q Consensus 136 -------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 178 (288)
.....++.++.+|.+.+.+++|.|....+++|..|..+.+||+
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 1112345567889999999999999999999999999999999
Q ss_pred Cccc-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 179 DRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 179 ~~~~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
...+ ....+.+|...|..+...+.-+.|++++.||.|.+|+...
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 6553 3456678999999998888888999999999999999863
No 262
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.9e-11 Score=105.30 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=135.8
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
...++|++++ ..+++.|+.+|.|++++..... .+...|... ..+|.++++|+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 4568888885 4689999999999999976433 333334433 5689999999999999999998888777
Q ss_pred EeccCCCCEEEEEEcCC-----CCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
.+.- ..++.+++++|+ .+.+++|+..| +.++.-+-. +.-..+....++|.+++|. |+++|-++.+| |+
T Consensus 108 ~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 6663 457999999996 56899999988 777653211 1112455677899999996 78888888776 89
Q ss_pred EEeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 217 i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
|||+.+++.+..+..... .......+.|.++.+++ . |...+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEec
Confidence 999998887776654321 11224567888765443 3 4667899999883
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.40 E-value=4.7e-12 Score=95.42 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=110.7
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeecc-ccCcEEEEEEecCCCEEEEEeC--
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQG-HKDSVSSLAFSMDGQLLASGGL-- 127 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-- 127 (288)
....+.+.+..|+++-.+-+.+- -..-+++++.||.+.+.+.+.... ...+.. |.+ -.+.++...+..+.++.-
T Consensus 77 ~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 77 DGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGN 154 (319)
T ss_pred cCcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcce
Confidence 33455566666665544444443 445788999999999999865211 111111 111 122334445555544421
Q ss_pred ---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcC-
Q 023018 128 ---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP- 201 (288)
Q Consensus 128 ---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p- 201 (288)
-+..+.|+++..+.+.........+.+++-+| +.+.+++|+.+|.+.+||.++.. +...++.|+.+++.+.|+|
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred EeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 23455666654433322222334599999999 55678888899999999999874 4556778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 023018 202 DGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~ 222 (288)
++..|++++.||.+-.||..+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 788999999999999999763
No 264
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.40 E-value=5.8e-09 Score=82.67 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=140.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (288)
+.+|.+.++.++++--..+.|+.|+..++.... +.. .. ...+++. +++ .|+++...+ +.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888677888888788999999998876543 221 22 5667777 564 555555544 56669988865544432
Q ss_pred -----CCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE-EEeCCC
Q 023018 148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA 213 (288)
Q Consensus 148 -----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~dg 213 (288)
.....+.+++.|+|++.++.... |.|+.++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34568899999999977776543 568888877 54333333 345678999999999876 455678
Q ss_pred eEEEEeCCCCce----eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018 214 TLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD 283 (288)
Q Consensus 214 ~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~ 283 (288)
.|..|++..... ...+..........-.+++..+|++.++....+.|.+++.. |+++..+ ..+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 899998853221 22232211122347789999999988888889999999987 8888866 557778773
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-11 Score=95.16 Aligned_cols=208 Identities=14% Similarity=0.209 Sum_probs=142.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeeccc------------cCcEEEEEEecCCC--EEEE
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGH------------KDSVSSLAFSMDGQ--LLAS 124 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~i~~~~~~~~~~--~l~~ 124 (288)
.+-|.++.|.. .|.+||||..+|.|.++.-.... ....++.| ...|..+.|.+++. .++.
T Consensus 25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45689999998 88999999999999999754322 22334334 34688899998765 6777
Q ss_pred EeCCCeEEEEeCCCCceeE--------------------Ee----------------ccCCCCEEEEEEcCCCCEEEEec
Q 023018 125 GGLDGLVQIWDPSSGNLKC--------------------TL----------------EGPGGGVEWVSWHPRGHIVLAGS 168 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~--------------------~~----------------~~~~~~i~~~~~~~~~~~l~~~~ 168 (288)
.+.|.+|++|-+....... .+ ..|.-.|.++.++.++..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 7889999999875321110 00 23455688999998888877764
Q ss_pred CCCeEEEEECCcccE---EEEeecc-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----EEEcCC--C
Q 023018 169 EDSTVWMWNADRAAY---LNMFSGH-----GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HVIRGH--P 233 (288)
Q Consensus 169 ~dg~i~i~d~~~~~~---~~~~~~~-----~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~--~ 233 (288)
|=.|.+|++.-... +..++.+ ..-|++..|+| ..+.++.++..|+|++.|++....- +.+... +
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 57899999864321 2222222 34578899999 5677888888999999999853211 111111 0
Q ss_pred -------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCcEEEEe
Q 023018 234 -------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TTGKVCCLN 274 (288)
Q Consensus 234 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~t~~~~~~~ 274 (288)
.-...|..+.|+++|+++++-.. -+|++||+ ...+++.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY 310 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence 02245788999999999987543 58999999 556666654
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=7.2e-12 Score=97.96 Aligned_cols=203 Identities=15% Similarity=0.266 Sum_probs=143.6
Q ss_pred CCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCee-----------------------------------eEee-cccc
Q 023018 65 DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW-----------------------------------ASEI-QGHK 107 (288)
Q Consensus 65 ~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~-----------------------------------~~~~-~~~~ 107 (288)
..|..+.|.++ +...+...+.|.+|++|.+..... .+.+ .+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 46899999884 345677788899999999854210 1111 3578
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE---EeccC-----CCCEEEEEEcC-CCCEEEEecCCCeEEEEEC
Q 023018 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC---TLEGP-----GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNA 178 (288)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 178 (288)
-.|+++.++.++..++++ .|=.|.+|++.--.... -++.+ ..-|++..||| ..+.++..+..|+|++.|+
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 889999999999888876 47789999986432221 12222 23588899999 4568888888899999999
Q ss_pred CcccEEEE----------------eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEEcCCCcc------
Q 023018 179 DRAAYLNM----------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVIRGHPYH------ 235 (288)
Q Consensus 179 ~~~~~~~~----------------~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~------ 235 (288)
|...+.-. +..--+.|..+.|++.|+++++-.. -+|++||+ ...+++.++..+...
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 85432110 1122356889999999999998653 57999999 455666666654321
Q ss_pred ---ccC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 236 ---TEG---LTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 236 ---~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
... -..++|+-++.++++|+....+++|++..|.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 111 2457888888899999999999999976654
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3.4e-09 Score=83.93 Aligned_cols=214 Identities=18% Similarity=0.303 Sum_probs=143.3
Q ss_pred EEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeeeEe--eccccCc----------EEEEEEecCCCEEEEEeC-CCeEE
Q 023018 68 YSVACSPTDATLVATG-GGDDKGFFWRINQ-GDWASE--IQGHKDS----------VSSLAFSMDGQLLASGGL-DGLVQ 132 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~--~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~ 132 (288)
+-+++++ ++++|+++ ...|.|.++.++. +..... ...|.+. +.+..+.|++++|++..- --.|.
T Consensus 92 ~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 7788888 55565555 4458899999865 332211 1124443 889999999999888753 34699
Q ss_pred EEeCCCCceeEEe---ccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcc-c---EEEEee------ccCCCeEEEE
Q 023018 133 IWDPSSGNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA-A---YLNMFS------GHGSSVTCGD 198 (288)
Q Consensus 133 i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~---~~~~~~------~~~~~i~~~~ 198 (288)
+|++..+++...- -......+.|.|+|++++.++.+. +++|.+|..... . .++.+. ........|.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9999977653321 135567899999999998777664 899999988763 2 222221 1234677899
Q ss_pred EcCCCCEEEEEeC-CCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEEc--CCCcEEEE
Q 023018 199 FTPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNI--TTGKVCCL 273 (288)
Q Consensus 199 ~~p~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~--~t~~~~~~ 273 (288)
++|+|++|+++.. ...|.+|.+... ..+..+.....+....+.+.++|.+++|+++..++ .|.+|.. .||++-..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 9999999998864 236777765432 33443333333455578899999999999988754 6777766 46665544
Q ss_pred e-----cceEEEEE
Q 023018 274 N-----FQYTCVAY 282 (288)
Q Consensus 274 ~-----~~~~~~~~ 282 (288)
. ....|+.|
T Consensus 331 ~~~~~~p~Pvcv~f 344 (346)
T COG2706 331 GRYAVVPEPVCVKF 344 (346)
T ss_pred ccccCCCCcEEEEE
Confidence 3 34555555
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=7.6e-12 Score=106.82 Aligned_cols=211 Identities=15% Similarity=0.266 Sum_probs=151.8
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
......+.||+.+|+.+-|+|+....+|+++.|..+..||+++. .++.....-......++|+-....+.+.+....|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 34456778999999999999999999999999999999999874 34444444444557899987666666667788999
Q ss_pred EEeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEE-EEeeccCCCeEEEEEcCCCCEEEE-
Q 023018 133 IWDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICT- 208 (288)
Q Consensus 133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~p~~~~l~~- 208 (288)
+||++.+ .++..+++|...+..+.|.. ....+.+++.||+|++||....... ........+|+.-++.|-|.-.++
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 9999876 56778888888899999976 3447889999999999998754322 112234567888888885543322
Q ss_pred -EeCCCeEEEEeCCC----------CceeEEEcCCCccccCeEEEEEcCC----------CCEEEEEeCCCcEEEEEcCC
Q 023018 209 -GSDDATLRVWNPKS----------GENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 209 -~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~t 267 (288)
.-.+..+.+++.++ .+++.++.+ |...|....|... .-.|++-+.|..+++|-+.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G---H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG---HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecC---cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 11222444444332 245677777 6666665555432 23689999999999999875
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.8e-12 Score=103.03 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=143.7
Q ss_pred eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEE
Q 023018 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM 175 (288)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i 175 (288)
....+..|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|...|....|-| ..+-+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 445678899999999999999999999999999999999988777765 5777788888888 3458999999999998
Q ss_pred EECCccc-E--EEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCCC
Q 023018 176 WNADRAA-Y--LNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADS 248 (288)
Q Consensus 176 ~d~~~~~-~--~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~ 248 (288)
=.+.... + ...+..|.++|..++.-|+. ..|++++.|+.+.-+|++.+.+...+.....+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7764332 2 23455699999999999954 5589999999999999998766555443322333 57788999954
Q ss_pred -CEEEEEeCCCcEEEEEcCCCcEE------EEe----------cceEEEEEee
Q 023018 249 -TLALSGSKDGSVHMVNITTGKVC------CLN----------FQYTCVAYDL 284 (288)
Q Consensus 249 -~~l~~~~~dg~i~iwd~~t~~~~------~~~----------~~~~~~~~~~ 284 (288)
..+++|+.|..+++||.+.-..- ..+ ..++|++|+.
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh 346 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH 346 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence 58899999999999998753222 111 4677888874
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.4e-10 Score=94.83 Aligned_cols=167 Identities=16% Similarity=0.308 Sum_probs=118.2
Q ss_pred EEEEcCCCCcEEEEEeC--C---------CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe--CCCeEEEEe
Q 023018 69 SVACSPTDATLVATGGG--D---------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG--LDGLVQIWD 135 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~~~--d---------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d 135 (288)
.+.|++.+..+|+.++. | .++++..+........+. -.++|+++.|+|+++-|+++. .=..+.|||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 46677744444444322 2 357777776434444443 478999999999998766553 456899999
Q ss_pred CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-
Q 023018 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD- 211 (288)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~- 211 (288)
++ +.++..+ ..++-+++-|+|.|++|+.++.+ |.|-|||+.+.+++..+..... +-..|+|+|++++|++.
T Consensus 301 lr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 301 LR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecc
Confidence 76 4444444 56677899999999999888764 7899999999988888875544 45689999999999874
Q ss_pred -----CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018 212 -----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 212 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (288)
|+.++||+.. |..+.... .......+.|-|
T Consensus 376 PRlrvdNg~Kiwhyt-G~~l~~~~----f~sEL~qv~W~P 410 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYT-GSLLHEKM----FKSELLQVEWRP 410 (566)
T ss_pred ccEEecCCeEEEEec-Cceeehhh----hhHhHhheeeee
Confidence 6779999974 65544332 112466677776
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.4e-09 Score=89.27 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=120.2
Q ss_pred eEEEEEccCCeeeEeeccccCcEEEEEEecCCCE-EEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
.|.+-|..... ...+... ..+....|+|+|+. ++..+. ...|.++|+.+++...... ..+......|+|+|+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45555544333 2333323 37788999999984 554433 3579999998887655443 4455667889999987
Q ss_pred EEEec-C--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018 164 VLAGS-E--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE 237 (288)
Q Consensus 164 l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (288)
++... . +..|+++++.++.. ..+..+........|+|+|+.|+..+. .+ .|+++|+.+++..+..... .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~-- 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K-- 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--
Confidence 76543 2 35788889877764 334433333445689999998877663 23 6888899877654433211 1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018 238 GLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVCCLNF--QYTCVAYDLD 285 (288)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~t~~~~~~~~--~~~~~~~~~d 285 (288)
....|+|+|+.|+..+.. ..|++.|+.++....... ......|+||
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPD 378 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSD 378 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCC
Confidence 124899999988766543 378999998887654432 2234666665
No 272
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.32 E-value=1.1e-08 Score=80.96 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=151.7
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeeeEeeccccCcEE--EEEEecCCCEEEEEeC-----CCeEEEEeCC
Q 023018 66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGL-----DGLVQIWDPS 137 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 137 (288)
....++.+|.....++.+..-|+ ..+||..+++....+....+.-. .-.|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45678889977888888888775 78899999988877754333221 4579999999998743 5899999998
Q ss_pred -CCceeEEeccCCCCEEEEEEcCCCCEEEEecC------------------CCeEEEEECCcccEEEEee----ccCCCe
Q 023018 138 -SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------------------DSTVWMWNADRAAYLNMFS----GHGSSV 194 (288)
Q Consensus 138 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~i 194 (288)
+.+.+..+..+.-....+.+.|+++.|+++.. +..+...|..+++.+.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 66778888888778888999999987777642 2356667778888776643 377789
Q ss_pred EEEEEcCCCCEEEEEeCCCe-------EEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEE-EEeCCCcEEE
Q 023018 195 TCGDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLAL-SGSKDGSVHM 262 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i 262 (288)
+.+++.++|..++..-..|. |.+++. +..+..+.... .....+-++++++++.+++ ++-..|.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999877766654442 444443 33333333211 1345688999999987765 4556789999
Q ss_pred EEcCCCcEEEEe
Q 023018 263 VNITTGKVCCLN 274 (288)
Q Consensus 263 wd~~t~~~~~~~ 274 (288)
||..+|+.+...
T Consensus 244 ~d~~tg~~~~~~ 255 (305)
T PF07433_consen 244 WDAATGRLLGSV 255 (305)
T ss_pred EECCCCCEeecc
Confidence 999999998876
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.5e-10 Score=96.69 Aligned_cols=205 Identities=16% Similarity=0.251 Sum_probs=139.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---------------eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
.....|++|+. ...++|+|+.||.+++..+.+.. .-+++.+|++.|.-+.|+.+.+.|-++..+
T Consensus 14 nvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34689999999 77899999999999999986521 223567899999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEe--ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE----EE-----------------
Q 023018 129 GLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LN----------------- 185 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~----------------- 185 (288)
|.|.+|-+-.+.....+ ....+.|.+++|+.+|..|.....||.|.+=.+...+. +.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999998777543332 23456788999999999988888888776654432110 00
Q ss_pred -------------------------------EeeccCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 186 -------------------------------MFSGHGSSVTCGDFT--------PDGKTICTGSDDATLRVWNPKSGENI 226 (288)
Q Consensus 186 -------------------------------~~~~~~~~i~~~~~~--------p~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (288)
.+......|..+.|. |+...|+++-..|.+.|-.-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 000011123334443 35556777777777766554443333
Q ss_pred EEEcCCCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEe
Q 023018 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVCCLN 274 (288)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~t~~~~~~~ 274 (288)
..+. ....+....|+++|.+|++++.+ +.|.+|.. -|+.+.++
T Consensus 253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl 304 (1189)
T KOG2041|consen 253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL 304 (1189)
T ss_pred eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEE
Confidence 3333 23567888999999999998764 25666653 34555544
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.31 E-value=4.4e-11 Score=95.32 Aligned_cols=160 Identities=21% Similarity=0.183 Sum_probs=111.1
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCccc
Q 023018 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAA 182 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~ 182 (288)
...+..++.+++||++..+....++++..... ...+.... ..+++.|-........+... ..+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455677888899888877777777654432 22222222 23444444444444444444 445555554444
Q ss_pred EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (288)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 262 (288)
+ ..+-+|-+-++.++|+||+++++++..|..|+|-.....-.+..+.-. |...|..++.-++ ..|++++.|++|++
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG--H~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG--HKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc--cHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 3 334479999999999999999999999999999877655444444332 8888999998875 55899999999999
Q ss_pred EEcCCCcEEEEe
Q 023018 263 VNITTGKVCCLN 274 (288)
Q Consensus 263 wd~~t~~~~~~~ 274 (288)
||+.+|+++.++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999999998655
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=2.3e-09 Score=87.71 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=137.0
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeEEeccCCC
Q 023018 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG 150 (288)
Q Consensus 72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 150 (288)
|++.++.+++..+. |...|.+...+-.++. ++.+.|.-..+..++.-++.|..|| .+-|||..+++.. .+...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCcc
Confidence 45556778888876 7888887665543332 3677788888888888899999999 9999999887644 4555667
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcee
Q 023018 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI 226 (288)
Q Consensus 151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~~~ 226 (288)
.|.++..+|+|++++++.....|.+.|+.++.....-+...+-|+.+.|+|+++++|-+--+| .|++||+.+++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 899999999999999999999999999999986665566677899999999999999877666 6899999887765
Q ss_pred EEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018 227 HVIRGHPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
..... ...=.+-+|.|++++|.--+
T Consensus 483 ~vTT~----ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTTP----TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCC----cccccCcccCCCCcEEEEEe
Confidence 54432 12223447888998877554
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=7.6e-11 Score=94.00 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=114.0
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee----eEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCC
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS 138 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~ 138 (288)
....+..++ +++++|.+..+....++++..... ...+.. ...-+++.|..+.....++.. ...+.+|....
T Consensus 64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344555666 788888888888877777765432 222222 222345555555555555443 34555665554
Q ss_pred CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (288)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~dg~i~i 217 (288)
+.. ..+-+|-+.+..++|+|++++|+++..|..|++-.......+..+- +|...|..++..++ ..|++++.|++|++
T Consensus 142 ~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 433 3345789999999999999999999999999998876665565554 69999999999864 56899999999999
Q ss_pred EeCCCCceeEEE
Q 023018 218 WNPKSGENIHVI 229 (288)
Q Consensus 218 ~d~~~~~~~~~~ 229 (288)
||+++|+.+.++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999999887554
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=95.75 Aligned_cols=148 Identities=13% Similarity=0.207 Sum_probs=114.8
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-----cEEEEeeccCCCeEEE
Q 023018 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCG 197 (288)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~ 197 (288)
++.+.+..|-+-++.++-.. .|. ..+.|.++.|+..+++++.|+.+|.|..+|+|.+ .+...+ .|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 44555677888888877433 333 5566899999998999999999999999999865 234444 489999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 198 DFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 198 ~~~p-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
.... ++++|++.+.+|+|.+||++.-+. +....+|..... ..-+-..+....+++++.|...+||.++.|.++++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a-~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA-YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc-ccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8877 788999999999999999987666 666666432222 22234456667888899999999999999999998
Q ss_pred e
Q 023018 274 N 274 (288)
Q Consensus 274 ~ 274 (288)
+
T Consensus 384 i 384 (425)
T KOG2695|consen 384 I 384 (425)
T ss_pred c
Confidence 7
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.28 E-value=2.5e-10 Score=99.85 Aligned_cols=182 Identities=15% Similarity=0.193 Sum_probs=137.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (288)
Q Consensus 77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 156 (288)
+..++.|+....+..+|+.+.+..+...-....|+-|+. +++++.+|...|+|.+-|..+.+.++++..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 344556666667777888877766666544445665554 678999999999999999999999999999999888766
Q ss_pred EcCCCCEEEEecC---------CCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ce
Q 023018 157 WHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSG-EN 225 (288)
Q Consensus 157 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~-~~ 225 (288)
. .|+.|++++. |..|+|||+|..+.+.-+.-+.++ .-+.|.| -...+++++..|...+-|..+. .+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 5 6889998875 456899999988777666544444 5577888 4567888899999999994432 22
Q ss_pred -eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 226 -IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 226 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
....... .....+..++++++++.|+.|..+|.|.+|.
T Consensus 302 ~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1222211 1455699999999999999999999999998
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=2.1e-08 Score=94.14 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=135.8
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--c------------cCcEEEEEEecCCCEEEEEe-CCCeEE
Q 023018 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--H------------KDSVSSLAFSMDGQLLASGG-LDGLVQ 132 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~------------~~~i~~~~~~~~~~~l~~~~-~dg~i~ 132 (288)
..+++++.++.++++-+..+.|++|+... ..+..+.. . -..-..+++.+++..|+++. ....|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875677888888889999999764 43333322 0 11246789998888666654 457899
Q ss_pred EEeCCCCceeEEeccC-----------------CCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeec-----
Q 023018 133 IWDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG----- 189 (288)
Q Consensus 133 i~d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 189 (288)
++|+.++... .+.+. -.....++++| ++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 9998776532 22110 11346799999 5667777778899999998776432 2211
Q ss_pred ----------cCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEEcCCC------------------ccccCeE
Q 023018 190 ----------HGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLT 240 (288)
Q Consensus 190 ----------~~~~i~~~~~~p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~~~v~ 240 (288)
.-.....|+++|+++.|++ -+.++.|++||+.++.......+.. .......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1123567999999986554 4557899999998765321111000 0112346
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 241 CLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 241 ~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
.++++++|.++++-..+++|++||..++.+...
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 889999999888888899999999998876643
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=7e-09 Score=84.95 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=133.8
Q ss_pred eCCCeEEEEEccCCeeeEe-e--c---ccc-----CcEEEEE-Eec-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC
Q 023018 84 GGDDKGFFWRINQGDWASE-I--Q---GHK-----DSVSSLA-FSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150 (288)
Q Consensus 84 ~~dg~i~iw~~~~~~~~~~-~--~---~~~-----~~i~~~~-~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 150 (288)
+..|.|++||..+...... + . ... .+..-+. |++ +|.+++..+. |...|.+...+-.++. ++.+
T Consensus 284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~ 360 (668)
T COG4946 284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKG 360 (668)
T ss_pred ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCC
Confidence 3348899999876443221 0 0 001 1111111 332 6788888875 7788877665544432 3556
Q ss_pred CEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018 151 GVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (288)
Q Consensus 151 ~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 229 (288)
.|....+..++.-++.|..|| .+-|||.++++ +..+...-+.|.++..+|+|++++++.....|.++|+.++.....-
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 688888888888999999999 89999998876 4455556678999999999999999999999999999998754332
Q ss_pred cCCCccccCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCcEEEEe
Q 023018 230 RGHPYHTEGLTCLTISADSTLALSGSKDG----SVHMVNITTGKVCCLN 274 (288)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~t~~~~~~~ 274 (288)
+. ...-|+.+.|+|++++++-+--+| .|+++|+.+++.....
T Consensus 440 kS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 440 KS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 22 456799999999999999876554 6999999998877654
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.26 E-value=3.8e-11 Score=90.63 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDW------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
|+.+.++ ....|+++..++.+......++.. ...+..|.++-.+-+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5666665 345667777666665555433322 22222333322222223345678999999999999
Q ss_pred eCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECCcccEEEEeeccCCCeEEEEEcCC-CCEEE
Q 023018 135 DPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTIC 207 (288)
Q Consensus 135 d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~-~~~l~ 207 (288)
+.+.-. ....+......-.+.++-..++.+.++.. -+..+.|+++..+.+..-......|++++-+|. ...++
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 876521 11112222222223333334555555433 134566666544332222222334899999994 45677
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 023018 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t 267 (288)
+|+.||.+.+||.++......+ ...|+.+++.+-|+| ++..|+++++||.+..||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8889999999999976432222 223889999999999 778999999999999999875
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=9.5e-09 Score=81.45 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=127.5
Q ss_pred CCeEEEEEccCCe----eeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCC--CceeE--EeccCCCCEEE
Q 023018 86 DDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS--GNLKC--TLEGPGGGVEW 154 (288)
Q Consensus 86 dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~--~~~~~--~~~~~~~~i~~ 154 (288)
+.-|++|++.+.+ .+.. -...+..+-|+|+|+.+.|.++.. .|.|.-|.+.. |+... .......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 4669999998432 1222 235566788999999998888754 47777777764 44322 22234445589
Q ss_pred EEEcCCCCEEEEecC-CCeEEEEECCc-ccE---EEEeeccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEE
Q 023018 155 VSWHPRGHIVLAGSE-DSTVWMWNADR-AAY---LNMFSGHGSS----------VTCGDFTPDGKTICTGSD-DATLRVW 218 (288)
Q Consensus 155 ~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~---~~~~~~~~~~----------i~~~~~~p~~~~l~~~~~-dg~i~i~ 218 (288)
+++++++++++++.. .|.|.++-++. |.+ +..+ .|..+ +....+.|++++|++... --.|.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 999999999998875 47899998865 332 2222 24444 788999999999988764 3369999
Q ss_pred eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 023018 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTG 268 (288)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~ 268 (288)
++..|.....-...-......+.|.|+|++++..+.++ +++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99877653322222225677899999999999887765 899999999873
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.5e-11 Score=100.77 Aligned_cols=173 Identities=13% Similarity=0.210 Sum_probs=130.9
Q ss_pred eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCe
Q 023018 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (288)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 172 (288)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++. ..+..++..|..+|..+.|-.+.+.+++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 445678888888887766777899999999999999863 2356677889999999999888777665 4789
Q ss_pred EEEEECCcccEEEEee--ccCCCeEEEEEcC--CCCEEEEE-eCCCeEEEEeCCCCceeEEEcCC--CccccCeEEEEEc
Q 023018 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTP--DGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS 245 (288)
Q Consensus 173 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~ 245 (288)
|.+||.-.++++.... ...+.+..+..-| +...++.| +...+|+++|.+.+.-...++.. +.....+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987777665332 1223344444444 33344444 67889999999988765554432 3355678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 246 ADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 246 ~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+.|++++++-..|.|.+.|.++|+++..-
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999999988744
No 284
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.24 E-value=1.2e-08 Score=80.41 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=123.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCC---CCEE
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPG---GGVE 153 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~ 153 (288)
..+++++.++.|+.||..+++.+..+.. ..++.... ...+..+++++.++.|+.+|..+|+.+... .... ....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 4556668899999999999998877764 22222111 224556777778889999999999988874 3221 1112
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----------VTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 154 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
.......+..++++..++.|..+|+++|+.+..+...... +..-....++ .++.++.++.+..+|+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence 2222223778888888999999999999998887653322 1121222234 7777887886444499999
Q ss_pred ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+.+.... . ..+.. .....+..|++++.++.|.+||++||+.+..
T Consensus 194 ~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 194 EKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 8654322 1 11222 1345677888888999999999999998754
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=2.9e-08 Score=76.52 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=130.9
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeecc---ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 70 VACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (288)
Q Consensus 70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (288)
++.+. ++++||.-. |..|.|-..++. ..+.+.+. ....-.-++|+|++.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~-~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecC-CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 45565 777776654 567777665542 22222222 22334689999999999999999999999987533 333
Q ss_pred eccC-------CCCEEEEEEcCC------CCEEEEecCCCeEEEEECCc-----ccEEEEeec---cCCCeEEEEEcCCC
Q 023018 145 LEGP-------GGGVEWVSWHPR------GHIVLAGSEDSTVWMWNADR-----AAYLNMFSG---HGSSVTCGDFTPDG 203 (288)
Q Consensus 145 ~~~~-------~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~---~~~~i~~~~~~p~~ 203 (288)
+... ...|..+.|-+. ...|++-...|.++-|-+.. .+....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 3321 235677777542 22566667778887766422 233344432 45689999999988
Q ss_pred CEEEEEeCC-----------CeEEEEeCCCCceeE--------------------------EEcCCCccccCeEEEEEcC
Q 023018 204 KTICTGSDD-----------ATLRVWNPKSGENIH--------------------------VIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 204 ~~l~~~~~d-----------g~i~i~d~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~ 246 (288)
+.|++|+.. .-+..|.+-++.+.. .+.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 888777531 135667554332111 0011112356789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 247 DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
||..|++...+|.|.+|++.+-++...-
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 9999999999999999999988776654
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.1e-09 Score=92.75 Aligned_cols=213 Identities=13% Similarity=0.100 Sum_probs=158.3
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCC-----------CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC--
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPT-----------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-- 118 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-- 118 (288)
..-+.++.+.-|+..|+.+.|.|. ...++|++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 345677888889999999999882 2346888888999999999999988999999999999999863
Q ss_pred -C-CEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCc-------ccEEEEee
Q 023018 119 -G-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-------AAYLNMFS 188 (288)
Q Consensus 119 -~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~ 188 (288)
. ..|++-....+|.+|+..+|+.............|+.+.| +.+.+..-+..|.+.+.+.-. ++..+.-.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 3666667778999999999998888777677788899999 666777777778887776521 22222222
Q ss_pred ccCC-----------------C--------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018 189 GHGS-----------------S--------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (288)
Q Consensus 189 ~~~~-----------------~--------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (288)
.|.. + ...++|+|.-+-++....-..+.++|++-...+..+.. ..+.+.-+.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~ 279 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVD 279 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeE
Confidence 2211 0 12356788655555556677899999987777777765 344555677
Q ss_pred EcCCC--CEEEEEeCCCcEEEEEcCC
Q 023018 244 ISADS--TLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 244 ~~~~~--~~l~~~~~dg~i~iwd~~t 267 (288)
|-|++ ..|++...+|.+.+|--+.
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeec
Confidence 77755 5799999999999997654
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=5.3e-09 Score=96.42 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=139.9
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEE----EccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS- 137 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 137 (288)
..+.|.++.+.+ +...++.+..+|.|.+. +..... +.....-...|.+++||||+..|+..+.++++.+....
T Consensus 74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 456799999999 66677788888999999 444322 23333356799999999999999999988888876411
Q ss_pred --------------C--------CceeEEecc------------------------CCCCEEEEEEcCCCCEEEEecC--
Q 023018 138 --------------S--------GNLKCTLEG------------------------PGGGVEWVSWHPRGHIVLAGSE-- 169 (288)
Q Consensus 138 --------------~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~-- 169 (288)
. |+....|.+ ....-..|+|-.||.++|+.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 111111111 1224567899999999998874
Q ss_pred -C---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCC-ccccCeEE
Q 023018 170 -D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHP-YHTEGLTC 241 (288)
Q Consensus 170 -d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~ 241 (288)
. ..++||+- .|.+..+-..-.+--.+++|.|.|+++|+... ...|.+|. ++|..-..|.... .....|..
T Consensus 232 ~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 2 47999985 46655444433344467899999999988764 34577776 4565544444321 24567999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 242 LTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
+.|++++.+|+....|. |.+|-..+-.
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 99999999999977654 9999887643
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=6.2e-12 Score=109.48 Aligned_cols=204 Identities=17% Similarity=0.235 Sum_probs=155.6
Q ss_pred CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CC-
Q 023018 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG- 129 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg- 129 (288)
..-++...++.|...-+|++|+- +.+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.+|..+++.+. ..
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhcccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 44567788889999999999998 8889999999999999999999999999999999999999999987665543 33
Q ss_pred eEEEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCC
Q 023018 130 LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGK 204 (288)
Q Consensus 130 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~ 204 (288)
...+|++.. +...+.|. .-.++.|+.....-+.|+......+||++++.++.++-. ....-.+..|+|...
T Consensus 1168 lsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred hHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 577998864 34444544 346788887655666677777899999999877766321 222336788999877
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.++ .|| .+||++..+.++.|.... --..-.|+|.|.-++..+ -|||++|.+.+...
T Consensus 1244 LIl---ndG--vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQFT----DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred eEe---eCc--eeeeeccHHHHhhhhhhe----ecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 665 355 479999888777776532 112236999999888776 69999998887765
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=6.5e-11 Score=92.79 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=124.7
Q ss_pred EEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----ceeE
Q 023018 70 VACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKC 143 (288)
Q Consensus 70 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~ 143 (288)
++|+-. .+.. ++.+.+-.|-+-++.++-. ..+. ..+.|.++.|...+++++.|+.+|.|..+|++.. ...+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 356542 2333 4445556788888887643 2333 5678899999988999999999999999999865 2333
Q ss_pred EeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccE---EEEeeccCCCe--EEEEEcCCCCEEEEEeCCCeEEE
Q 023018 144 TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSV--TCGDFTPDGKTICTGSDDATLRV 217 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i--~~~~~~p~~~~l~~~~~dg~i~i 217 (288)
.+. |.+.|+++..-. ++.+|++.+.+|.|++||+|--++ +.++.+|-..- .-+...+....+++++.|...||
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 443 778899988776 788999999999999999987666 88888775433 23344566778888999999999
Q ss_pred EeCCCCceeEEEcCCCcc-ccCeEEEEEc
Q 023018 218 WNPKSGENIHVIRGHPYH-TEGLTCLTIS 245 (288)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~-~~~v~~~~~~ 245 (288)
|.++.|..+.+++..... ...+.+++|.
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCceeeccCCCCccccccccceehh
Confidence 999999988887643211 2234555554
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=6.8e-09 Score=95.72 Aligned_cols=198 Identities=16% Similarity=0.277 Sum_probs=132.0
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------------------------eEeecc-----------
Q 023018 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------------------------ASEIQG----------- 105 (288)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------~~~~~~----------- 105 (288)
..-...|.|++||| ++.+|+..+.+++|.+-.-. ..+ -..|.|
T Consensus 117 G~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~ 194 (928)
T PF04762_consen 117 GSVDSGILAASWSP-DEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR 194 (928)
T ss_pred EEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc
Confidence 33456899999999 78888888888888776531 110 001100
Q ss_pred -------------ccCcEEEEEEecCCCEEEEEeC---C---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018 106 -------------HKDSVSSLAFSMDGQLLASGGL---D---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166 (288)
Q Consensus 106 -------------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 166 (288)
+...-..++|-.||.+||+.+- . ..|+||+-. |........-.+--.+++|.|.|++||+
T Consensus 195 ~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 195 DPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 2223456889999999998864 2 589999854 7665555544454567899999999998
Q ss_pred ecC---CCeEEEEECCcccEEEEee----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCCcccc
Q 023018 167 GSE---DSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTE 237 (288)
Q Consensus 167 ~~~---dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~ 237 (288)
... ...|.+|. ++|..-..|. .....|..+.|++++..|+....+. |.+|-..+..- .+.+.-. ...
T Consensus 274 ~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--~~~ 349 (928)
T PF04762_consen 274 SQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--SSE 349 (928)
T ss_pred EEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc--CCC
Confidence 765 34566665 4554433333 3456899999999999999977655 99998776532 2222211 233
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 023018 238 GLTCLTISA-DSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 265 (288)
.+..+.|+| +...|...+.+|.+..+++
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 455599999 5566777777677665544
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=107.90 Aligned_cols=164 Identities=16% Similarity=0.273 Sum_probs=134.6
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE
Q 023018 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (288)
Q Consensus 106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 184 (288)
+-..|.++.=+|...+.++|+.||.|++|....++.+..++. ..+.++.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 455678888889889999999999999999998888777763 33789999999999999999999999999985 7778
Q ss_pred EEeeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018 185 NMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (288)
Q Consensus 185 ~~~~~~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (288)
...+.|........|-. ..+++++ .++.+.+||.--......+. ..|...++++++.|..++|++|+.+|.|+
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 88888998888888874 5666654 47789999964322222222 34889999999999999999999999999
Q ss_pred EEEcCCCcEEEEe
Q 023018 262 MVNITTGKVCCLN 274 (288)
Q Consensus 262 iwd~~t~~~~~~~ 274 (288)
+||++..+++.++
T Consensus 2362 l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTF 2374 (2439)
T ss_pred EeehHHHHHHHHh
Confidence 9999987776654
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.9e-10 Score=92.14 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=151.7
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCeEEEEeCC
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPS 137 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 137 (288)
-|.+.|+.+... ...++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 377888888765 567899999999999998654 2345556678899999999999998999777 9999999988
Q ss_pred CCceeEEecc--CCCCEEEEEEcCCCC---EEEE-ecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 138 SGNLKCTLEG--PGGGVEWVSWHPRGH---IVLA-GSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 138 ~~~~~~~~~~--~~~~i~~~~~~~~~~---~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
+-..+.-++. ..+.+ +...++ |. .+++ ...+|.+.++|-+... ....-.-|..+|.++.+.|-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a-~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFA-EWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCce-EEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 7654433222 11212 122222 31 3333 3457899999977543 223334588999999999999999999
Q ss_pred eCCCeEEEEeCCC-Ccee-----EE------EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 210 SDDATLRVWNPKS-GENI-----HV------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 210 ~~dg~i~i~d~~~-~~~~-----~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
...|.|.-|.... .+.. .. +-+.........++.|+|++..+.+-+.|..|+++.+++|++++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999998762 1111 11 1111224566789999999999999999999999999999988876
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=2.2e-08 Score=84.58 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=122.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (288)
Q Consensus 77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 156 (288)
+..+++++.+|.|+.+|..+++.+..+............ ++..+++++.+|.+..+|..+|+.+..............
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 346777888899999999999887766533322122222 466788888999999999999998876654332111111
Q ss_pred EcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE-EEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 023018 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG-DFTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (288)
Q Consensus 157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 233 (288)
. .+..++.++.+|.++.||.++++.+..+......+... .-+| .+..++.+..+|.+..+|+++|+.+.......
T Consensus 143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 2 34577778889999999999998877765432211100 0011 23577888889999999999998765433110
Q ss_pred ccc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 234 YHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 234 ~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
... . .+..+.-+| .+..+++++.+|.++.||..+|+.+...
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 000 0 000011111 2446666777788888888888766544
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=2.6e-08 Score=75.90 Aligned_cols=192 Identities=12% Similarity=0.027 Sum_probs=131.3
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeE-EeccCCCCEEEE
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKC-TLEGPGGGVEWV 155 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~-~~~~~~~~i~~~ 155 (288)
-+..++.|.++++.++..+..........-.+.+++++++++++++.+....|..|.+.... ... ........-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 34456777888888776544333332222337899999999999999999999999886542 222 223334456788
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCcccEE-E----EeeccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEE
Q 023018 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYL-N----MFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNPKSGENIHV 228 (288)
Q Consensus 156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~----~~~~~~~~i~~~~~~p~~~--~l~~~~~dg~i~i~d~~~~~~~~~ 228 (288)
.|+.....+|+++.||++.|||+|..... . +-..|.+.++.+.|+|.|. +|+..-.-+.+.+.|++++...+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99999999999999999999999875322 2 2234889999999998553 455555667899999999876665
Q ss_pred EcCCCc----cc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 229 IRGHPY----HT-EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 229 ~~~~~~----~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
+...+. |. ..+..-.|+.++..+.+.+++ .+.=|++.+....
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSRF 336 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccch-hhheeecccccee
Confidence 543221 22 236677777777666665543 4566666654443
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.2e-08 Score=83.51 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=125.2
Q ss_pred CEEEEEEcCCCCcEEEEEeC-----------CCeEEEEEccCCeeeEeeccccC--c-EEEEEEecCCCEEEEEeCCCeE
Q 023018 66 EVYSVACSPTDATLVATGGG-----------DDKGFFWRINQGDWASEIQGHKD--S-VSSLAFSMDGQLLASGGLDGLV 131 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~dg~i 131 (288)
.|.-+.||| ..++|+|-+. ...++|||+.+|.....+..... . -.-+.||.+++++|.-.. ..|
T Consensus 251 ~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 378899999 7888888543 25699999999998887765222 2 234689999999987765 569
Q ss_pred EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEEE--------------------
Q 023018 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM-------------------- 186 (288)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-------------------- 186 (288)
.||+.....++..-...-.+|....|+|.+.+||.=+-. ..+.+..+.+++.+++
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 999876643332222233457777888877766642210 1222222222111110
Q ss_pred -----------------------ee---------ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-CceeEEEc
Q 023018 187 -----------------------FS---------GHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKS-GENIHVIR 230 (288)
Q Consensus 187 -----------------------~~---------~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~ 230 (288)
++ .....|...+|-|.|+.+++-+. ..++.+|-+.+ ......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 00 12345677789998888766543 34688888763 32222222
Q ss_pred CCCccccCeEEEEEcCCCCEEEEE---eCCCcEEEEEcCC
Q 023018 231 GHPYHTEGLTCLTISADSTLALSG---SKDGSVHMVNITT 267 (288)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~t 267 (288)
.. .....+.+.|+|.|++++++ |..|.+.++|+.-
T Consensus 489 ~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 EL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred hh--cccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 22 23557889999999998876 4578999999883
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=3.7e-08 Score=83.21 Aligned_cols=187 Identities=16% Similarity=0.081 Sum_probs=120.8
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccCcEE-----EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC--C-
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-----SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G- 150 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~- 150 (288)
.++.++.+|.|+.||..+++.+..+......+. +... .+..++.+..+|.+..+|..+++.+....... +
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 455566778888888888877666543222111 1111 12467788888999999999998765433110 0
Q ss_pred -C---EEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 151 -G---VEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (288)
Q Consensus 151 -~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~ 224 (288)
. ...+.-+| .+..+++++.+|.++.||..+++.+..... .. ..... ..+..+++++.+|.|+.+|..+++
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 0 00011111 355788888899999999999987766542 11 11222 246788888899999999999998
Q ss_pred eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF 275 (288)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~ 275 (288)
.+....... .....+... .+..|++++.+|.|+++|..+|+.+..+.
T Consensus 301 ~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 301 ELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 766553211 111122122 35688899999999999999999998763
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1e-06 Score=69.86 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=118.8
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-----ccCcEEEEEEecCCCEEEEEeCC--------CeEEE
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGLD--------GLVQI 133 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i 133 (288)
...+++...++.+++ +.. +.+.++|+.+++....... .....+++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 666777732555554 444 4456669888765444332 23467899999999977766543 56777
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccE----EEEe---eccCCCeEEEEEcCCCCE
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAY----LNMF---SGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~i~~~~~~p~~~~ 205 (288)
++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++..... ...+ ....+..-.+++..+|++
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 7776 55433333 345678999999998665 556778899999853211 1222 222234788999999998
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEE
Q 023018 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSG 254 (288)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 254 (288)
.++....+.|.+++.. |+.+..+... ...+++++|. ++...|+..
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEE
Confidence 8888889999999987 8888877753 3478999994 665655543
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=4.4e-09 Score=81.73 Aligned_cols=208 Identities=13% Similarity=0.228 Sum_probs=136.6
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeecccc------------CcEEEEEEecCCC--EEEE
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHK------------DSVSSLAFSMDGQ--LLAS 124 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l~~ 124 (288)
...|+++.|.. .+.+|++|...|+|.+|.-.... ....+++|. ..|..+.|..++. .++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45699999998 78899999999999999865432 223344443 4578888876543 5677
Q ss_pred EeCCCeEEEEeCCCCce-------------------e--------EE---------------e-ccCCCCEEEEEEcCCC
Q 023018 125 GGLDGLVQIWDPSSGNL-------------------K--------CT---------------L-EGPGGGVEWVSWHPRG 161 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~-------------------~--------~~---------------~-~~~~~~i~~~~~~~~~ 161 (288)
.+.|.+|++|.+..... + .+ + ..|.-.|.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998643200 0 00 0 2244457788888877
Q ss_pred CEEEEecCCCeEEEEECCccc---EEEEeeccC-----CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----EE
Q 023018 162 HIVLAGSEDSTVWMWNADRAA---YLNMFSGHG-----SSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HV 228 (288)
Q Consensus 162 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~----~~ 228 (288)
..++++ .+=.|.+|++.-.. .+..++.|. .-|++..|+| ....+..++..|.|++-|++....- ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 776665 45789999886432 222233332 3578889999 4456666777999999999843210 11
Q ss_pred E----cCC-----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEe
Q 023018 229 I----RGH-----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLN 274 (288)
Q Consensus 229 ~----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~ 274 (288)
+ .+. ..-...|..+.|+++|+++++-+. -+|++||++.. .+++++
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 1 000 012346788999999999887543 48999999864 344443
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.4e-08 Score=87.87 Aligned_cols=206 Identities=17% Similarity=0.211 Sum_probs=151.8
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC------------CCEEEEEeCCCeEEE
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD------------GQLLASGGLDGLVQI 133 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~l~~~~~dg~i~i 133 (288)
.-.++.|+| .| ++|-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|- .-+||++...|.|.+
T Consensus 17 N~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 17 NRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 356788998 54 6666665 57889999999999999999999999999862 125778888999999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcC---CC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEE
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICT 208 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~ 208 (288)
||...+..+..+..+..++..++|-+ +. ..|++-....++.+|+..+|+....+........|+.+.| +.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 99999998888998999999999976 33 4667777778999999999999998887778888999999 6777777
Q ss_pred EeCCCeEEEEeCCC-------CceeEEEcCCCc-------------cccC---------eEEEEEcCCCCEEEEEeCCCc
Q 023018 209 GSDDATLRVWNPKS-------GENIHVIRGHPY-------------HTEG---------LTCLTISADSTLALSGSKDGS 259 (288)
Q Consensus 209 ~~~dg~i~i~d~~~-------~~~~~~~~~~~~-------------~~~~---------v~~~~~~~~~~~l~~~~~dg~ 259 (288)
.+..|.+.+-+.-. ++..+....+.. +... ...++|+|.-+-++...-...
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77788887776431 222222222100 0000 123567885443344445677
Q ss_pred EEEEEcCCCcEEEEe
Q 023018 260 VHMVNITTGKVCCLN 274 (288)
Q Consensus 260 i~iwd~~t~~~~~~~ 274 (288)
+.++|+.-..++...
T Consensus 254 llv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVV 268 (1062)
T ss_pred eEEEcchhhceeEEE
Confidence 999999877766655
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=1.5e-07 Score=77.84 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=136.6
Q ss_pred CCEEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-----------C
Q 023018 65 DEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----------L 127 (288)
Q Consensus 65 ~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~ 127 (288)
..|...+|+|. ++..||. .+..+++++|.+..+..+.+-.-....=..+.|++.|++|++-. .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 45888889994 3334443 46678999999987766655443333335688999998765431 1
Q ss_pred CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
...++|+++..... .......++|...+|.|.++.+++.+ ....+.++|++.. .... ....+-..+.|+|.+++
T Consensus 254 esnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 254 ESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERY 329 (561)
T ss_pred cceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccE
Confidence 24678888774333 33225578999999999888766554 6788999999866 3333 34455577889999999
Q ss_pred EEEEeC---CCeEEEEeCCCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCcEE
Q 023018 206 ICTGSD---DATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGS------KDGSVHMVNITTGKVC 271 (288)
Q Consensus 206 l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~t~~~~ 271 (288)
++.++- .|.+-+||....-... .+.+ ...+-+.|+|+++++.+.. .|..|.||++...+..
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 988765 4679999987544333 4432 3455678999999988764 3788999999865544
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=7.1e-08 Score=76.00 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=119.6
Q ss_pred CCeEEEEEccCCeeeEeeccc--cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018 86 DDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (288)
+|.|..||..+++.+...... .....+. ..+.+.++++++.++.|+.||..+|+.+..+..... +.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccc
Confidence 688999999999988877531 1222211 233566788888999999999999998887765322 11111 123556
Q ss_pred EEEecCCCeEEEEECCcccEEEEe-eccC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cC
Q 023018 164 VLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EG 238 (288)
Q Consensus 164 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~ 238 (288)
+++++.++.++.+|.++++.+... .... .....+.....+..++++..++.|..+|+++|+.+.......... ..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999988874 3221 111222233347889999989999999999999987776532111 11
Q ss_pred ------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018 239 ------LTCLTISADSTLALSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 239 ------v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~ 272 (288)
+..-....++ .++.++.+|.+..+|+.+|+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 1222222244 77777778864444999998665
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.7e-08 Score=86.73 Aligned_cols=192 Identities=15% Similarity=0.282 Sum_probs=127.3
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (288)
..-+++.||+..|.-+.|+. ..+.|-++..+|.|.+|-+-.++....+. ..++.|.+++|+.+|..|...-.||.|.
T Consensus 62 smNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred chhhhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 44578999999999999998 66778899999999999998887655543 3567789999999999988888888876
Q ss_pred EEeCCCCceeE-Eecc---------------------------------------------------CCCCEEEEEEc--
Q 023018 133 IWDPSSGNLKC-TLEG---------------------------------------------------PGGGVEWVSWH-- 158 (288)
Q Consensus 133 i~d~~~~~~~~-~~~~---------------------------------------------------~~~~i~~~~~~-- 158 (288)
+=.+..++... .+++ ....|..+.|.
T Consensus 141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 64443221100 0000 01123344442
Q ss_pred ------CCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCC
Q 023018 159 ------PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------TLRVWNPKSG 223 (288)
Q Consensus 159 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg---------~i~i~d~~~~ 223 (288)
|+-..|+++..+|.+.+-.-.+......+. ..-.+..+.|+++|..|++++.+. .|.+|..- |
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G 298 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G 298 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h
Confidence 244566677666766664433322112222 235678899999999999987543 56777653 6
Q ss_pred ceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018 224 ENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (288)
..+.++.. ....|++++|--.|-.++
T Consensus 299 ~i~gtlkv---pg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 299 HIVGTLKV---PGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred hheEEEec---CCceeeeeEEcCCceEEE
Confidence 66777765 456688888866554443
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.6e-09 Score=85.34 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=156.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeecc--ccCcEEEEEEe-cCCC---EEEEE-e
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQG--HKDSVSSLAFS-MDGQ---LLASG-G 126 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~-~~~~---~l~~~-~ 126 (288)
.-+..+..|-..|.+++.+- ++.++++.+. |..++++|+.+-..+.-+.- ..+. +.|. ..|. .|+++ .
T Consensus 44 EfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~ 119 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLF 119 (558)
T ss_pred eehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecc
Confidence 34556677888899999887 7888888777 99999999987554433221 1222 2232 2231 44444 3
Q ss_pred CCCeEEEEeCCCCc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc------ccE---------EEEeec
Q 023018 127 LDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------AAY---------LNMFSG 189 (288)
Q Consensus 127 ~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~---------~~~~~~ 189 (288)
.+|.+.++|-.... ....-.-|.++|..+.+.+.+..+++....|.|.-|.... ... +..+..
T Consensus 120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 67999999976443 2333345889999999999999999999999999998763 111 111223
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-----------------------------c-cccCe
Q 023018 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------------Y-HTEGL 239 (288)
Q Consensus 190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------~-~~~~v 239 (288)
.+....++.|+|++..+.+-+.|..|+++++++|..++.+.... . .....
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~ 279 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG 279 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence 45567899999999999999999999999999987654432110 0 11234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV 280 (288)
Q Consensus 240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~ 280 (288)
+.+.|...+++|+-|+-=| |++.++.|+++++.+.....+
T Consensus 280 ~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~i 319 (558)
T KOG0882|consen 280 TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAI 319 (558)
T ss_pred ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhh
Confidence 5678888899999887654 999999999999988544433
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.2e-07 Score=81.48 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=131.7
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCc-EEEEEEecCCCEEEEEeCCC-----eEEEEeCCCC
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDG-----LVQIWDPSSG 139 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 139 (288)
.|+| |++ ++..+|.|+.+|.|.+.+- ..+.+..++.+... |..+....+..+|++.+.|+ .++||++..-
T Consensus 27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4544 455 6678899999999888773 34455677777766 44443333445777776554 5899998632
Q ss_pred ------cee--EEecc-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECC---c-ccEEEEeeccCCCeEEEEEcCC
Q 023018 140 ------NLK--CTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---R-AAYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 140 ------~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~~p~ 202 (288)
..+ .++.. ...++.+++.+.+-+.+|+|-.+|.|.++.-. . +....-......+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 222 11111 25678999999998999999999999998532 1 2222222235679999999988
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 203 GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+..++.+..-..|.+|.+....+ ...+.. ++.++.|..+++....+++++ +..+.+|+....++...+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~---~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDN---NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeecc---CCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 88733333456799999874332 222333 777888988887544344443 457999998876666555
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=5.1e-09 Score=90.01 Aligned_cols=179 Identities=20% Similarity=0.333 Sum_probs=130.7
Q ss_pred CEEEEEEcCCC-CcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc
Q 023018 66 EVYSVACSPTD-ATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 66 ~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 140 (288)
.|-.+.|+|.. ..+-++......-.+|++.. ...-..+.+|...|+.+.|+|+.. .+++++.|..+..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 36667787742 23444444456677899864 334456778999999999999765 78999999999999998764
Q ss_pred -eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 023018 141 -LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRV 217 (288)
Q Consensus 141 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i 217 (288)
.+..+..-......++|+.....+++.+....|.+||++.+ .++..+++|...|..+.|.. -...+.+++.||+|++
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 45555555566788999987667777777789999999976 67788888988999998876 3345788999999999
Q ss_pred EeCCCCce--eEEEcCCCccccCeEEEEEcCCC
Q 023018 218 WNPKSGEN--IHVIRGHPYHTEGLTCLTISADS 248 (288)
Q Consensus 218 ~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 248 (288)
||...... .+++. ...+|..-++.|-|
T Consensus 229 w~y~kSt~e~~~~vt----t~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVT----TNFPIWRGRYLPFG 257 (1081)
T ss_pred ecccccccccceecc----ccCcceeccccccC
Confidence 99764432 22222 34566666666633
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.99 E-value=1.8e-07 Score=77.40 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCC---------------eEEEEEccCCeeeEeeccccCc--EE-EEEEecCCCEEEEEe
Q 023018 65 DEVYSVACSPTDATLVATGGGDD---------------KGFFWRINQGDWASEIQGHKDS--VS-SLAFSMDGQLLASGG 126 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~ 126 (288)
..|.-+.|+| .+.+|.+-+..+ .+.+||..++..+..+.....+ .+ -+.|+-+.+++|-.
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 4588899999 888998875544 4999999999999998876655 44 67888888776544
Q ss_pred CCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCC--CEEEE-----ecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018 127 LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRG--HIVLA-----GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (288)
....++|+++...-....+.. ....|....|+|.+ ..|++ ....+.+++|.+..++.+.+-.-....-..+.
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 345799999722211111211 12468889999953 34443 45678999999987776655444444456789
Q ss_pred EcCCCCEEEEEe-----------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEEc
Q 023018 199 FTPDGKTICTGS-----------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS--GSKDGSVHMVNI 265 (288)
Q Consensus 199 ~~p~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~ 265 (288)
|.+.|.+|++-- ....+++++++... +..... ..++|...+|.|.++.+++ |-.+-.+.++|+
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc---ccccceeeeecccCCceeEEecccccceeeccc
Confidence 999999875421 13468888887332 222212 5789999999997766554 446788999999
Q ss_pred CCC
Q 023018 266 TTG 268 (288)
Q Consensus 266 ~t~ 268 (288)
+..
T Consensus 306 r~N 308 (561)
T COG5354 306 RGN 308 (561)
T ss_pred ccc
Confidence 875
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.98 E-value=4.3e-07 Score=70.17 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-------ccCcEEEEEEecCC---C---EEEEEeCCCeEE
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDG---Q---LLASGGLDGLVQ 132 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~i~~~~~~~~~---~---~l~~~~~dg~i~ 132 (288)
.=..++|+| +..+||.+...|+|+++|+.... +..+.. -...|..|.|.+.. + .|++-...|.++
T Consensus 45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356799999 88899999999999999987533 333321 23466777775422 1 455666778777
Q ss_pred EEeCCC-----CceeEEecc---CCCCEEEEEEcCCCCEEEEecCC----C-------eEEEEECCcccEE---------
Q 023018 133 IWDPSS-----GNLKCTLEG---PGGGVEWVSWHPRGHIVLAGSED----S-------TVWMWNADRAAYL--------- 184 (288)
Q Consensus 133 i~d~~~-----~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d----g-------~i~i~d~~~~~~~--------- 184 (288)
=|-+.. .+..+.+.. ....|.++.|+|..++|++|+.. + -+..|.+-++.+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 666432 233333332 34579999999998888887642 1 2556654322110
Q ss_pred ------------E-----Ee---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Q 023018 185 ------------N-----MF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (288)
Q Consensus 185 ------------~-----~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 231 (288)
+ .+ ......|..|..||+|..|++...+|.|.+|++.+.........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 0 00 11345789999999999999999999999999988776666554
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.2e-07 Score=82.60 Aligned_cols=158 Identities=17% Similarity=0.313 Sum_probs=116.1
Q ss_pred eeEeecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-----C
Q 023018 57 THIFSGHSDEVYSVACSPT------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-----G 119 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-----~ 119 (288)
...|..|.+.|.-..+.-. .+.++++|+.||+|.|-.+.+.+...++. ...++.+++++|+ .
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~s 129 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQS 129 (846)
T ss_pred eeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhh
Confidence 3455678888777766552 48899999999999999999988777776 4578999999997 4
Q ss_pred CEEEEEeCCCeEEEEeCC--CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC----
Q 023018 120 QLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---- 193 (288)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---- 193 (288)
+.+++|+..| +.++.-. ..+....+....++|.++.|. |+++|-++.+| |++||+..++.+..+......
T Consensus 130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred hheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcc
Confidence 5899999888 7777532 112222456677899999995 78888888766 899999988877666543332
Q ss_pred --eEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018 194 --VTCGDFTPDGKTICTGSDDATLRVWNPK 221 (288)
Q Consensus 194 --i~~~~~~p~~~~l~~~~~dg~i~i~d~~ 221 (288)
...+.|.+. ..|+.|-. .+|+|..++
T Consensus 206 ~fpphl~W~~~-~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDE-DRLVIGWG-DSVKICSIK 233 (846)
T ss_pred cCCCceEecCC-CeEEEecC-CeEEEEEEe
Confidence 245677754 45666654 468888877
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.95 E-value=2.4e-08 Score=87.90 Aligned_cols=149 Identities=18% Similarity=0.328 Sum_probs=117.7
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---------CCeEEEEeC
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDP 136 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~ 136 (288)
.|+-++. +++++.+|...|+|.+-|..+.+.++++..|.+.|.++.. .|+.|++|+. |..|+|||+
T Consensus 179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 4555554 5578899999999999999999999999999999987555 7889998875 456899999
Q ss_pred CCCceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEEC---Ccc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 137 SSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA---DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~---~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
+..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|. .+. .-+..+....+.+..+++++.++.++.|..
T Consensus 254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 988877766666553 56788884 457888888899999983 333 123333344556999999999999999999
Q ss_pred CCeEEEEeC
Q 023018 212 DATLRVWNP 220 (288)
Q Consensus 212 dg~i~i~d~ 220 (288)
+|.|.+|--
T Consensus 333 ~g~v~~wa~ 341 (1118)
T KOG1275|consen 333 EGHVNLWAD 341 (1118)
T ss_pred cCcEeeecC
Confidence 999999963
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=5.7e-09 Score=57.07 Aligned_cols=39 Identities=38% Similarity=0.819 Sum_probs=36.8
Q ss_pred ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
++++.++.+|..+|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.93 E-value=2e-06 Score=68.37 Aligned_cols=194 Identities=18% Similarity=0.184 Sum_probs=130.1
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEE-----eCCCeEEEEEcc-CCeeeEeeccccCcEEEEEEecCCCEEEEEeC-
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATG-----GGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGL- 127 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 127 (288)
.+-+.|.|| -.|++ ++++|++. +..|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++-.
T Consensus 47 ~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 444566666 46888 66677664 446899999998 67788888877666678999999988877621
Q ss_pred -----------------CCeEEEEeCCCCceeEEec----cCCCCEEEEEEcCCCCEEEEecCCC-------eEEEEECC
Q 023018 128 -----------------DGLVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSEDS-------TVWMWNAD 179 (288)
Q Consensus 128 -----------------dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~ 179 (288)
+-.+...|..+|+.+.... .|...|+.+++.++|..++..-..| -|.++..
T Consensus 120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~- 198 (305)
T PF07433_consen 120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR- 198 (305)
T ss_pred CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-
Confidence 2345556777787766633 2666899999999987766654433 2444433
Q ss_pred cccEEEEe-------eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018 180 RAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (288)
Q Consensus 180 ~~~~~~~~-------~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 251 (288)
+..+..+ ......+-+|++++++..+++.+ ..+.+.+||..++..+..... ..+..++..+++ ++
T Consensus 199 -g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~ 271 (305)
T PF07433_consen 199 -GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FL 271 (305)
T ss_pred -CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eE
Confidence 2222222 23457889999999998875554 677899999999988766643 335566666665 55
Q ss_pred EEEeCCCcEEEEE
Q 023018 252 LSGSKDGSVHMVN 264 (288)
Q Consensus 252 ~~~~~dg~i~iwd 264 (288)
++. ..|.+....
T Consensus 272 ~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 272 VSS-GQGQLIRLS 283 (305)
T ss_pred EeC-CCccEEEcc
Confidence 554 345544433
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=4.6e-09 Score=57.44 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=36.1
Q ss_pred eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (288)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (288)
+++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 313
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.93 E-value=3.1e-07 Score=82.16 Aligned_cols=140 Identities=13% Similarity=0.211 Sum_probs=96.7
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeEEeccCCCC-EEEEEEcC-----CCCEEEEecCCCeEEEEECCccc--EEEE-ee-
Q 023018 120 QLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA--YLNM-FS- 188 (288)
Q Consensus 120 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~- 188 (288)
++|+.. .....|+-.|+..|+.+..+..+... |..++-.. .....++|-.+..+..||.|-.. ++.. .+
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344433 35678999999999999999877653 44443221 13356777788999999998642 2211 11
Q ss_pred -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
......+|++-+.+| +||+|+.+|.||+||- .|... ..+++ ...+|..|..+.||++|++.| +..+.++++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~---lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG---LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC---CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 234567787777654 7999999999999994 34332 23333 678999999999999988765 557777775
No 314
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.93 E-value=4.4e-06 Score=65.35 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=118.6
Q ss_pred eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (288)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (288)
+.+.+-...+..++|+|+.+.++++....+.|..++. +++.+.++.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455666679999999977889999999999988886 47777776533 245678889877776666666899999988
Q ss_pred CCCc------eeEEec-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---ccEEEEe--------eccCCCe
Q 023018 137 SSGN------LKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMF--------SGHGSSV 194 (288)
Q Consensus 137 ~~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~~~i 194 (288)
.... ....+. .+...+-.++|+|.++.|+++-...-..+|.+.. ...+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 111121 2445689999999888777776655566665543 2111111 1133457
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc------cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 195 TCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 195 ~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
.+++++|. +.+++.+..+..|.++| .+|+.+..+.-... .-...-.++|.++|++.++ ++.+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 89999994 55667777788899999 56777665543221 1235778999999976555 466666655
No 315
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.8e-07 Score=78.25 Aligned_cols=179 Identities=13% Similarity=0.199 Sum_probs=125.2
Q ss_pred EEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (288)
Q Consensus 89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 168 (288)
...|+.........-...+-.-+-+.|||.|.||++--.-| |.+|--.+...+++|. |. .+.-+.|||..++|++-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEec
Confidence 45566544322222222223346789999999999988766 8899777766677665 43 489999999999999865
Q ss_pred C-----------CCeEEEEECCcccEEEEeeccCC--Ce-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc
Q 023018 169 E-----------DSTVWMWNADRAAYLNMFSGHGS--SV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234 (288)
Q Consensus 169 ~-----------dg~i~i~d~~~~~~~~~~~~~~~--~i-~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 234 (288)
. ...+.|||+++|...+.+..... .+ .-..||.+++++|.-.. ..|.||+..+.. .+.....
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~---lld~Ksl 344 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM---LLDKKSL 344 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee---eeccccc
Confidence 3 25799999999998888775222 22 34679999999987765 568999876533 3333333
Q ss_pred cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEe
Q 023018 235 HTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~t~~~~~~~ 274 (288)
...+|....|+|.+++|+--.. -.++.+-.+.+++.+++.
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence 5577889999999888875432 246777788887777654
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=1.6e-08 Score=78.70 Aligned_cols=199 Identities=17% Similarity=0.260 Sum_probs=133.3
Q ss_pred CEEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCe------------------------------------------eeEe
Q 023018 66 EVYSVACSP-TDATLVATGGGDDKGFFWRINQGD------------------------------------------WASE 102 (288)
Q Consensus 66 ~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~------------------------------------------~~~~ 102 (288)
.|..+.|.. .+...+...+.|.+|++|.+.... +.+.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 578888875 344567778889999999985320 0001
Q ss_pred e-ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee---EEeccCC-----CCEEEEEEcCC-CCEEEEecCCCe
Q 023018 103 I-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---CTLEGPG-----GGVEWVSWHPR-GHIVLAGSEDST 172 (288)
Q Consensus 103 ~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~ 172 (288)
+ ..|.-.|.++.|+.+...++++ .|=.|.+|++.-.... .-++.|. .-|++..|+|. ...+...+..|.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1 3577788999999888877775 4778999998643322 2223332 34788899994 456777777899
Q ss_pred EEEEECCcccEEE----------------EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCc-
Q 023018 173 VWMWNADRAAYLN----------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPY- 234 (288)
Q Consensus 173 i~i~d~~~~~~~~----------------~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~- 234 (288)
|++-|+|+..+.. -+..-.+.|..+.|+++|+++++-+. -+|+|||.+.. .++.++..+..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence 9999998643211 11123457889999999999988664 57999998754 45555543211
Q ss_pred --------cccCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 235 --------HTEGL---TCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 235 --------~~~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
....| ..+.|+-+...+++|+.....-+|-+.
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 12222 346778788888888888777777643
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.2e-07 Score=76.32 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 133 (288)
++.+.+.+|...|..++|+|....++..++.+..|+|.|+.+...+..+..+ ..+++++|.-+.. +|..|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 4455778889999999999976668889999999999999999988888877 7889999987654 7888889999999
Q ss_pred EeCCCC
Q 023018 134 WDPSSG 139 (288)
Q Consensus 134 ~d~~~~ 139 (288)
||++..
T Consensus 263 yD~R~~ 268 (463)
T KOG1645|consen 263 YDMRQP 268 (463)
T ss_pred EEccCC
Confidence 998754
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.89 E-value=7e-07 Score=81.20 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=133.0
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC----CC--
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP----SS-- 138 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~----~~-- 138 (288)
+.|.++.|.- +...++.+...|.|.+-|..+.... ....-...|.+++|+|+...++..+..+++.+-.- -.
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 5799999988 6677778888899999987765432 23335678999999999999998888787776432 11
Q ss_pred -----------------CceeEEeccC---------------------CCCEEEEEEcCCCCEEEEe-----cCCCeEEE
Q 023018 139 -----------------GNLKCTLEGP---------------------GGGVEWVSWHPRGHIVLAG-----SEDSTVWM 175 (288)
Q Consensus 139 -----------------~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i 175 (288)
|+....|++. .+.=.+|.|--+|.++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111122211 1122458999999999983 33378999
Q ss_pred EECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEEcCC-CccccCeEEEEEcCCCCEE
Q 023018 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLA 251 (288)
Q Consensus 176 ~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 251 (288)
||-+ +.+-.+-....+--.+++|-|.|..+++-. .++.|.+|.. +|-.-..+... +.....+..++|+.++.+|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence 9976 543332222334447899999999988754 4557889974 44333322211 1133348999999999999
Q ss_pred EE---EeCCCcEEEEEcCC
Q 023018 252 LS---GSKDGSVHMVNITT 267 (288)
Q Consensus 252 ~~---~~~dg~i~iwd~~t 267 (288)
++ ......|++|-+.+
T Consensus 305 Av~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeecccccceEEEEEecC
Confidence 87 44455599998876
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.88 E-value=6.5e-07 Score=75.82 Aligned_cols=223 Identities=18% Similarity=0.207 Sum_probs=132.3
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCe--
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGL-- 130 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-- 130 (288)
.+.+..-...+..-+|+|....+.+..-.. ..++++++.+++....+. ..+.-....|+|+|++|+.+ ..||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 344444456677788998555444332222 459999999876555544 33334567899999976655 45664
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 207 (288)
|.++|+..+. ...+....+.-..-.|+|+|+.|+..+. .| .|.+++...+.. ..+......-..-.|+|+|++|+
T Consensus 264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEE
Confidence 6666777665 3335444444457789999998887764 34 477777766554 33333333333678999999998
Q ss_pred EEeCC-Ce--EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCcEEEEecceEEEEE
Q 023018 208 TGSDD-AT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKVCCLNFQYTCVAY 282 (288)
Q Consensus 208 ~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~t~~~~~~~~~~~~~~~ 282 (288)
..+.. |. |.+.|+.++...+.+.. ......-.|.+++..+...+.. +.+..--..+++....+......+.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~----~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~ 417 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTS----TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVR 417 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccc----cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCccee
Confidence 77643 44 77788877765555542 2333445788888776654332 2333323334554443333334444
Q ss_pred eecc
Q 023018 283 DLDF 286 (288)
Q Consensus 283 ~~df 286 (288)
.|+|
T Consensus 418 ~p~w 421 (425)
T COG0823 418 VPAW 421 (425)
T ss_pred cccc
Confidence 4444
No 320
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.88 E-value=5.3e-06 Score=69.71 Aligned_cols=204 Identities=14% Similarity=0.161 Sum_probs=121.8
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-------------------------------------------eEe
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------------------------------------------ASE 102 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~~~ 102 (288)
.|+.++|.+ ...-|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999 667888999999999998753211 111
Q ss_pred eccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec--c------CCCCEEEEEEcC-----CC---CEEEE
Q 023018 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--G------PGGGVEWVSWHP-----RG---HIVLA 166 (288)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~---~~l~~ 166 (288)
+....++|++++.+. =.++|+|..+|.+.|.|++....+..-. . ....++++.|.. ++ -.+++
T Consensus 82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 123367899999874 4499999999999999998887776522 1 234678888863 22 47899
Q ss_pred ecCCCeEEEEECC--c-cc----EEEEeeccCCCeEEEE-EcCC-C-------------------CEEEEEeCCCeEEEE
Q 023018 167 GSEDSTVWMWNAD--R-AA----YLNMFSGHGSSVTCGD-FTPD-G-------------------KTICTGSDDATLRVW 218 (288)
Q Consensus 167 ~~~dg~i~i~d~~--~-~~----~~~~~~~~~~~i~~~~-~~p~-~-------------------~~l~~~~~dg~i~i~ 218 (288)
|+..|.+.+|.+. . +. .......+.++|..+. ++.+ | ..+++...+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 21 1122223556665554 3221 1 123444447789999
Q ss_pred eCCCCceeEEEcCCCccccCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 219 NPKSGENIHVIRGHPYHTEGLTCLTIS-----ADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+.+.+....... .......+.+- ..+..|++-..+|.|++|.+..-+.+...
T Consensus 241 ~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 241 KPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp -TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred eCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 9987776555442 22223334442 35677888899999999999998888765
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=7.8e-10 Score=93.50 Aligned_cols=199 Identities=21% Similarity=0.278 Sum_probs=134.1
Q ss_pred CCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEec-CCCEEEEEe----CCCeEEEEeC
Q 023018 65 DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGG----LDGLVQIWDP 136 (288)
Q Consensus 65 ~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~i~d~ 136 (288)
.-+.|+++.-. +..++++|..+|.|.+-.++.... ....+++..++++++|++ |...||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45778887653 346899999999999988875432 234567888999999998 556777773 4678999999
Q ss_pred CCC----ceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcC-CCCEEEEE
Q 023018 137 SSG----NLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP-DGKTICTG 209 (288)
Q Consensus 137 ~~~----~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p-~~~~l~~~ 209 (288)
.++ +....|.. ......+++|..+.+.+++|.....+.++|+|... ....+ ....+..+...| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 11122222 33456689999888899999998999999998542 12222 234566777888 77788776
Q ss_pred eCCCeEEEEe-CCCCce-eEEEc-CCCccccCeEEEEEcCCC-CEEEEE-eCCCcEEEEEcC
Q 023018 210 SDDATLRVWN-PKSGEN-IHVIR-GHPYHTEGLTCLTISADS-TLALSG-SKDGSVHMVNIT 266 (288)
Q Consensus 210 ~~dg~i~i~d-~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~-~~dg~i~iwd~~ 266 (288)
. ||.|.+|| .++-+. +..+. ........+..++|+|.. ..|++. -..++|+++++.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 99999999 443222 22221 111122358899999933 234444 345789999985
No 322
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.83 E-value=7e-07 Score=80.00 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=96.8
Q ss_pred cEEEEE-eCCCeEEEEEccCCeeeEeeccccCc-EEEEEEec-----CCCEEEEEeCCCeEEEEeCCCCc--eeEE-e--
Q 023018 78 TLVATG-GGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGN--LKCT-L-- 145 (288)
Q Consensus 78 ~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~-- 145 (288)
.+|+.. .....|+-.|+..|+.+.....+... |..++-.. ....-+.|-.+..+..||.+-.. ++.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344433 34577888999999999998877644 55443221 12345667778889999988542 2211 1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
.......+|++-..+| +||+|+.+|.|++||--..+....+.+.+.+|..|..+.+|++|++.+ +..|.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234457777777665 899999999999999533344445667789999999999999988766 455667764
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=1.6e-06 Score=73.69 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=119.5
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeeccccC----------cEE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD----------SVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (288)
..+++++.+|.|.-+|..+++.+-....... .+. .+.. .+..++.++.+|.++.+|..+|+.+.+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 3566777789999999999887766542210 000 0111 34567788889999999999999887766
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeE-EEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 023018 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~p--~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
........... .+..+++++.+|.++.+|..+++.+..+......+. ...-+| .+..++.++.+|.+..+|..+|
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 44321111112 245677788889999999999998877753211110 000122 2346777888999999999998
Q ss_pred ceeEEEcCCCccc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 224 ENIHVIRGHPYHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 224 ~~~~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+.+.......... . ....+..+| .+..+++++.+|.++.+|+.+|+.+...
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 8765543211000 0 011111222 2445666677888888888888776543
No 324
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.9e-05 Score=66.67 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=148.9
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeE
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKC 143 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 143 (288)
-..++.++.+.+..++...+..|.+.|..+.+.......-. .-..++++++++.+.++.. ++++.+.|..+++...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 35677777566677777777899999987777666655333 4467999999987766654 6899999999998888
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEE-E---eeccCCCeEEEEEcCCCCEEEEEeCC---CeE
Q 023018 144 TLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-M---FSGHGSSVTCGDFTPDGKTICTGSDD---ATL 215 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~~p~~~~l~~~~~d---g~i 215 (288)
.......+ ..+++.|+|..++.+. .++.|.+.|........ . ..........+.++|++.++++.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 86554444 8899999999666665 67999999977665443 1 11123345678899999987776554 589
Q ss_pred EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~ 274 (288)
.+.|..++.......... .. ....+..+|+|..+.+.. ..+.+.+.|..+.+.....
T Consensus 234 ~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 234 LKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred EEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 999998877655422111 22 456789999999888774 4589999999998888865
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=4.1e-07 Score=79.91 Aligned_cols=109 Identities=15% Similarity=0.264 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcEEEEEeC----CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 68 YSVACSPTDATLVATGGG----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
+-.+|+| ...++|+++. .|.|.||- .+|++..... -.-.+++++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3356898 6667777643 47788875 4555443322 12235679999988889999999999999988877777
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 179 (288)
....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 777899999999999999999999999999999764
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=1.8e-06 Score=73.41 Aligned_cols=185 Identities=14% Similarity=0.084 Sum_probs=120.3
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEE-EE
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VS 156 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-~~ 156 (288)
.++.++.+|.++.+|..+++.+.+..... .+.+ ... .+..+++++.+|.|..+|..+|+.+..+......+.. ..
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 55667788999999999998877765332 2221 112 2446777888999999999999988777543111100 00
Q ss_pred EcC--CCCEEEEecCCCeEEEEECCcccEEEEeeccCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCce
Q 023018 157 WHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-------SVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN 225 (288)
Q Consensus 157 ~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~ 225 (288)
-+| .+..++.++.+|.+..+|..+++.+........ ....+..+| .+..+++++.+|.+..+|+.+|+.
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 112 234577788889999999999887655431110 011112233 356788888899999999999987
Q ss_pred eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+...... . ...+.. .+..|+.++.+|.++.+|..+|+.+..
T Consensus 279 ~W~~~~~----~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 279 VWKREYG----S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEeecCC----C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 6654321 1 111222 456777788899999999999987654
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=6e-09 Score=91.42 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=127.0
Q ss_pred eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC--eEEEE
Q 023018 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMW 176 (288)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~ 176 (288)
...++..|....+|++|+...+.|++|+..|.|++|++.+|.......+|.++++.+.-+.+|..+++.+.-. -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3445677888999999999999999999999999999999999999999999999999998998777765533 46799
Q ss_pred ECCc-ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCccccCeEEEEEcCCCCEEEEE
Q 023018 177 NADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSG 254 (288)
Q Consensus 177 d~~~-~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (288)
++.+ +.+.++|.. -.++.|+..-+.-+.|+......+||+.++.++.++ .........-+...|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 9865 345555542 346788875555555666667899999999877663 22222233346788999887776
Q ss_pred eCCCcEEEEEcCCCcEEEEe
Q 023018 255 SKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 255 ~~dg~i~iwd~~t~~~~~~~ 274 (288)
.|| .+||++..+.+..+
T Consensus 1247 -ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred -eCc--eeeeeccHHHHhhh
Confidence 344 78999988777655
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=5.6e-07 Score=79.08 Aligned_cols=187 Identities=15% Similarity=0.214 Sum_probs=128.0
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE---
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--- 143 (288)
+++++|+| ...+|+.|-.-|.+.+|...+.+.......|..+|.-+.|+++|..++++..-|.+.+|....-..+.
T Consensus 62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 56799999 78899999999999999998877777777799999999999999999999999999999865211000
Q ss_pred ---------------EeccC---------------CCCE------------EEE--EEcCCCCEEEEecCCCeEEEEECC
Q 023018 144 ---------------TLEGP---------------GGGV------------EWV--SWHPRGHIVLAGSEDSTVWMWNAD 179 (288)
Q Consensus 144 ---------------~~~~~---------------~~~i------------~~~--~~~~~~~~l~~~~~dg~i~i~d~~ 179 (288)
++... ...+ .++ .=.|+|..++.++.+|+|+-.|-.
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC
Confidence 01000 0000 000 113467788889999999888732
Q ss_pred cccEEEEe---------------------------------------------e--------------------------
Q 023018 180 RAAYLNMF---------------------------------------------S-------------------------- 188 (288)
Q Consensus 180 ~~~~~~~~---------------------------------------------~-------------------------- 188 (288)
. ++.... .
T Consensus 221 g-~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg 299 (1416)
T KOG3617|consen 221 G-RQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG 299 (1416)
T ss_pred C-cEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence 1 110000 0
Q ss_pred -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018 189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-------GENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
.....+.|+++..-+..|..|...|.+.+|--.. +.....+.+.....+.|+.+.|.|--..+++.+
T Consensus 300 ~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 300 LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 0134578899998888999999999999995321 123344544444567799999998555544443
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=2e-05 Score=60.48 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=105.1
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC
Q 023018 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (288)
Q Consensus 72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 151 (288)
..++...+++.|+..+.+.--|..++....... ....|.+-+.- -|++++.|+..|.+++.+..+|.....+..-..-
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 334456788889999999999999887665533 23333333222 4678999999999999999999877776644332
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
-......+++..+..|+.|++.+..|.++..++.+.+-..+...+-+..|-...|+.+...|.+.--..+.+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 223445678899999999999999999999888887655444455556664445666666676655554443
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.70 E-value=1.4e-06 Score=73.86 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=80.4
Q ss_pred EEEEEEecCC-CEEEEE----eCCCe----EEEEeCCCCceeEE--e-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE
Q 023018 110 VSSLAFSMDG-QLLASG----GLDGL----VQIWDPSSGNLKCT--L-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (288)
Q Consensus 110 i~~~~~~~~~-~~l~~~----~~dg~----i~i~d~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 177 (288)
..++.|+... ..+.+. +.+|. -.+|++..++.... . -...+.+.+.+++|+...++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 3567777533 344433 23443 34677665543321 1 13566799999999999999999999999999
Q ss_pred CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 8766333 2234566789999999999999999999999998643
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.64 E-value=6.8e-06 Score=69.81 Aligned_cols=114 Identities=13% Similarity=0.225 Sum_probs=80.3
Q ss_pred EEEEEEcC-CCCEEEEe----cCCCe----EEEEECCcccE--EEEe-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 152 VEWVSWHP-RGHIVLAG----SEDST----VWMWNADRAAY--LNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 152 i~~~~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~--~~~~-~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
..++.|+- +...+.+. +.+|. -.+|++...+. +... -...+.+.+.+++|+...|+.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35566665 34444442 22333 34566654432 1111 13677899999999999999999999999999
Q ss_pred CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
...+..... . ..-.++.++|+|+|.++++|+..|.+.+||+.-...
T Consensus 288 ~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 288 TTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 876633322 2 345678899999999999999999999999975443
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.63 E-value=3.3e-05 Score=67.47 Aligned_cols=194 Identities=15% Similarity=0.211 Sum_probs=122.7
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccC------cEE--EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 150 (288)
.++.++.++.|+-.|..+++.+-.+..... .+. .+... ++..++.++.+|.|+-+|..+++.+..+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 455677789999999999887766643221 110 01111 225788888899999999999998887764322
Q ss_pred C--EEEEEEcC--CCCEEEEec---------CCCeEEEEECCcccEEEEeeccCCC--------------------e-EE
Q 023018 151 G--VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGSS--------------------V-TC 196 (288)
Q Consensus 151 ~--i~~~~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~--------------------i-~~ 196 (288)
. -..+.-+| .+..++.++ .+|.++.+|..+++.+..+...... + ..
T Consensus 142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 0 01111122 224555554 3688999999999988776542110 1 12
Q ss_pred EEEcCCCCEEEEEeCCC------------------eEEEEeCCCCceeEEEcCCCccc----cCeEEEEEc----CCCC-
Q 023018 197 GDFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPYHT----EGLTCLTIS----ADST- 249 (288)
Q Consensus 197 ~~~~p~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~~- 249 (288)
.++.+.+..++.++.++ .|.-+|+.+|+.+..+.... +. .......+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCCCeEEeccccCCCe
Confidence 34445567788887665 79999999999887765321 10 000001111 1333
Q ss_pred --EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 250 --LALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 250 --~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+++++.+|.++.+|..+|+++...
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEe
Confidence 6778889999999999999998765
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=1.3e-05 Score=73.35 Aligned_cols=158 Identities=19% Similarity=0.346 Sum_probs=103.8
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc----C-------------------CeeeEeeccc-------------
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN----Q-------------------GDWASEIQGH------------- 106 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~----~-------------------~~~~~~~~~~------------- 106 (288)
-.+.|.+++|+| ++..++..+..+++.+-... . |+....+.+.
T Consensus 108 vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 108 VDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 356799999999 78888888877777665431 0 0101112110
Q ss_pred --------cCcEEEEEEecCCCEEEEEe----CC-CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec---CC
Q 023018 107 --------KDSVSSLAFSMDGQLLASGG----LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---ED 170 (288)
Q Consensus 107 --------~~~i~~~~~~~~~~~l~~~~----~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d 170 (288)
...=+.+.|--+|.++|+.. .+ ..|+|||.. |..-..-....+.-.+++|-|.|.++++-. .+
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC
Confidence 11123588999999998842 23 799999976 554444344445567899999999998864 45
Q ss_pred CeEEEEECCccc----EEEEeeccCCCeEEEEEcCCCCEEEE---EeCCCeEEEEeCCCC
Q 023018 171 STVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICT---GSDDATLRVWNPKSG 223 (288)
Q Consensus 171 g~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~p~~~~l~~---~~~dg~i~i~d~~~~ 223 (288)
+.|.+|.- +|. ....+......+..++|+.++..|++ ......|++|-+.+.
T Consensus 266 ~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 266 SDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 67888863 332 22223333445899999999999987 444556999987654
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.0002 Score=60.51 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=134.9
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEE
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCT 144 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~ 144 (288)
....+...|.+....++-.....+...+............-...-..+++++.+..++ +...+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 3455666664434444443333454444442221111111112235677888887544 444568999999888877776
Q ss_pred eccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 023018 145 LEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP 220 (288)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~ 220 (288)
..... ....++++|+++.++++.. ++++.+.|..+.+.+.....-..+ ..++++|+|..+++.. .++.|.++|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 65444 5788999999987777655 689999999998888875544445 8899999999877665 7889999997
Q ss_pred CCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe
Q 023018 221 KSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN 274 (288)
Q Consensus 221 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~ 274 (288)
.+....+ .-............+.++|+|..+.+.... +.+...|..++......
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 7655442 100001123445678999999876665443 59999999998888863
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.2e-07 Score=72.69 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=78.5
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEE
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICT 208 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~ 208 (288)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ .++++++|.-+. .+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66676666666667777888899999999766 7888999999999999999999988877 789999998854 56888
Q ss_pred EeCCCeEEEEeCCCCc
Q 023018 209 GSDDATLRVWNPKSGE 224 (288)
Q Consensus 209 ~~~dg~i~i~d~~~~~ 224 (288)
|...|.|.|||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999998643
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.55 E-value=8.4e-06 Score=69.20 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=107.5
Q ss_pred CeeeEeeccccCcEEEEEEecCCCEEEEEe---CC-CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec-CCC
Q 023018 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS 171 (288)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 171 (288)
+.....+......+..-+|+|++..++... .. ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 444444444456677788999988655442 22 469999999887655554 233455679999999777654 455
Q ss_pred --eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018 172 --TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 172 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (288)
.|+++|+..+. +..+....+.-+.-.|+|+|++++..+. .| .|.++++..+...+.... ...-..-.|+|
T Consensus 261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~~~~~~p~~Sp 335 (425)
T COG0823 261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----GGGNSNPVWSP 335 (425)
T ss_pred CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----CCCCcCccCCC
Confidence 47777887766 3334433333346789999999876654 44 477778776655333332 12222668999
Q ss_pred CCCEEEEEeC-CCc--EEEEEcCCCc
Q 023018 247 DSTLALSGSK-DGS--VHMVNITTGK 269 (288)
Q Consensus 247 ~~~~l~~~~~-dg~--i~iwd~~t~~ 269 (288)
+|++|+..+. +|. |.+.++.++.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCC
Confidence 9999887664 344 7777776665
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.54 E-value=1.8e-05 Score=68.88 Aligned_cols=174 Identities=11% Similarity=0.022 Sum_probs=112.7
Q ss_pred EEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCceeEEeccCCCCEEEEEE
Q 023018 82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (288)
Q Consensus 82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 157 (288)
+.-..+.+.+.|..+.+....+..- +....+.++|+++++++.+.+ .++..-+.........+.... + -++
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~ 284 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEA 284 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHh
Confidence 3344566777787777766665532 234567899999988887632 233333332222222221110 0 133
Q ss_pred cCCCCEEEEecCCCeEEEEECCc-----ccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce------
Q 023018 158 HPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGEN------ 225 (288)
Q Consensus 158 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~------ 225 (288)
.++|++...+ ++.|.+.|.++ .+.+..+. -......+.++|+|+++++++. +.++.|+|+.+.+.
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 4467766653 57899999998 34444444 4566789999999999877664 88999999987542
Q ss_pred ------eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 226 ------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 226 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
..... ........+|.++|....+.--|..|..|++.+
T Consensus 362 ~~~~~vvaeve----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPE----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeec----cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222 233445678999998888888899999999987
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.53 E-value=0.00012 Score=57.48 Aligned_cols=182 Identities=17% Similarity=0.248 Sum_probs=110.2
Q ss_pred eeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018 102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (288)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 179 (288)
.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+-.-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555556799999999765 6667778889988886 47777776543 3458889998877777776678999999883
Q ss_pred cc------cEEEEee-----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEEc--C---CCccccCeE
Q 023018 180 RA------AYLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIR--G---HPYHTEGLT 240 (288)
Q Consensus 180 ~~------~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~---~~~~~~~v~ 240 (288)
.. .....+. .++..+-.++|.|.++.|+++-...-..+|.+.. ...+.... . .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1112222 2455689999999888888887776666776543 22221111 0 111334578
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-------------cceEEEEEeec
Q 023018 241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN-------------FQYTCVAYDLD 285 (288)
Q Consensus 241 ~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~-------------~~~~~~~~~~d 285 (288)
++.++| .+.+++.......|..+| .+|+++..+ ....+++|.++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 899999 567777788888999999 778877755 24788888765
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=6.5e-05 Score=65.66 Aligned_cols=183 Identities=14% Similarity=0.189 Sum_probs=116.5
Q ss_pred CCCeEEEEEccCCeeeEeeccccC--------------------cE-EEEEEecCCCEEEEEeCCC--------------
Q 023018 85 GDDKGFFWRINQGDWASEIQGHKD--------------------SV-SSLAFSMDGQLLASGGLDG-------------- 129 (288)
Q Consensus 85 ~dg~i~iw~~~~~~~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg-------------- 129 (288)
.+|.|..+|..+++.+-.+..... .+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 367889999999887776643211 01 1234444566777777665
Q ss_pred ----eEEEEeCCCCceeEEeccCCCCE------EEEEEc----CCCC---EEEEecCCCeEEEEECCcccEEEEeeccCC
Q 023018 130 ----LVQIWDPSSGNLKCTLEGPGGGV------EWVSWH----PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHGS 192 (288)
Q Consensus 130 ----~i~i~d~~~~~~~~~~~~~~~~i------~~~~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 192 (288)
.|.-+|..+++.+..++...... ....+. -++. .+++++.+|.++.+|.++++.+......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 79999999999888765321111 001111 1232 6788889999999999999988776532
Q ss_pred CeEEEEEcCCCCEEEEE------------------eCCCeEEEEeCCCCceeEEEcCCCcc-c----cCe--EEEEEcCC
Q 023018 193 SVTCGDFTPDGKTICTG------------------SDDATLRVWNPKSGENIHVIRGHPYH-T----EGL--TCLTISAD 247 (288)
Q Consensus 193 ~i~~~~~~p~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~-~----~~v--~~~~~~~~ 247 (288)
...+..+| ..++.+ ..+|.|.-+|+.+|+.+......... . .+. ..+. ..
T Consensus 331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~ 405 (488)
T cd00216 331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA 405 (488)
T ss_pred -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence 11233444 334332 23678999999999887766532100 0 111 1122 24
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 248 STLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
+..|++++.||.|+.+|..||+.+...
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEE
Confidence 578889999999999999999999876
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.7e-06 Score=73.36 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=91.1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE-----Ee-ccC
Q 023018 76 DATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-----TL-EGP 148 (288)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~-~~~ 148 (288)
...+++.|+.-|.|++|+-..+.....-. +..+.+.....+++..++|.|+..|.|.++-+....... .. ..|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 67799999999999999977665443322 234456667788888889999999999999876642211 11 125
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----cEEEEeeccCCCeEEEEEc
Q 023018 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~ 200 (288)
...|++++|++++..+++|...|+|..-.+... ...+.+....+.|-.+...
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 678999999999999999999999988877662 1223333456677777665
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=7.4e-08 Score=81.88 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=107.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCcEEEEE----eCCCeEEEEEccCC--eeeE--eecc-ccCcEEEEEEecCCCEEEEEeC
Q 023018 57 THIFSGHSDEVYSVACSPTDATLVATG----GGDDKGFFWRINQG--DWAS--EIQG-HKDSVSSLAFSMDGQLLASGGL 127 (288)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~ 127 (288)
.-...+|..++++++|++.+...||+| ..|..+.|||+.++ -+.. .+.. ......+++|..+.+++++|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 344567888999999999888888887 33667999999875 2111 1221 2344568899988889999999
Q ss_pred CCeEEEEeCCCCc-eeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEE-CCcc-cEEEEeeccC----CCeEEEEE
Q 023018 128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWN-ADRA-AYLNMFSGHG----SSVTCGDF 199 (288)
Q Consensus 128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~-~~~~~~~~~~----~~i~~~~~ 199 (288)
...++++|++... ....+ ....+..+...| .++++++-. +|.|.+|| .++- .++..+.... ..+..++|
T Consensus 175 sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 9999999988432 11122 223456677788 566666555 89999999 3332 2333332222 24899999
Q ss_pred cCCC-CEEEEEe-CCCeEEEEeCC
Q 023018 200 TPDG-KTICTGS-DDATLRVWNPK 221 (288)
Q Consensus 200 ~p~~-~~l~~~~-~dg~i~i~d~~ 221 (288)
.|.. ..+++.. ..++|+.||+.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 9933 2344444 46689999985
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00048 Score=55.80 Aligned_cols=197 Identities=12% Similarity=0.093 Sum_probs=116.7
Q ss_pred EEEcCCCCcEEEEE--eCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEE--
Q 023018 70 VACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCT-- 144 (288)
Q Consensus 70 ~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~-- 144 (288)
++++. ++++++.. +-.-.|.|-|+...+.+..+.- .+. ..+ +-...+.|.+-|.||.+.-..+. .|+...+
T Consensus 100 ~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC-~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGC-WLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSE-EEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCE-EEE-EecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 34555 44444433 2234577777777777776652 222 222 21122468888899999988887 4544322
Q ss_pred --eccCCCCE-EEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeecc----------CCCeEEEEEcCCCCEEEEE
Q 023018 145 --LEGPGGGV-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGH----------GSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 145 --~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~----------~~~i~~~~~~p~~~~l~~~ 209 (288)
|.....++ ..-++...+..++..+..|.|+-.|+..... ...+... .+.-.-+++++..++|++.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 11222222 2334455555666678889999999876532 2222210 1223346777766666553
Q ss_pred eC---CC-------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCcEEEEe
Q 023018 210 SD---DA-------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSG-SKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 210 ~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~t~~~~~~~ 274 (288)
-. +| .|-+||+.+++.+..+. ...++.++..+.+.. +|++. ..++.+.+||..||+.+..+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 21 11 48888999999999887 345677899998654 66554 45789999999999999987
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=5e-05 Score=67.25 Aligned_cols=175 Identities=15% Similarity=0.199 Sum_probs=115.0
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEEEccCC------eee--Eeecc-----ccCcEEEEEEe
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQG------DWA--SEIQG-----HKDSVSSLAFS 116 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~------~~~--~~~~~-----~~~~i~~~~~~ 116 (288)
+.++-++.+...|...-|.-.+..+|++-+.|+ .|+||++... +++ ..+.. ...++.+++.+
T Consensus 55 ~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs 134 (933)
T KOG2114|consen 55 QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS 134 (933)
T ss_pred eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE
Confidence 344556666666333334443556777766654 4999998653 122 11111 35678999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCC----CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-EEEeeccC
Q 023018 117 MDGQLLASGGLDGLVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHG 191 (288)
Q Consensus 117 ~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 191 (288)
.+-+.+|+|-.+|.|..+.-. .+...........+|+.+++..++..++.+.....|.+|.+....+ ...+..++
T Consensus 135 ~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G 214 (933)
T KOG2114|consen 135 EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG 214 (933)
T ss_pred ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC
Confidence 998899999999999998532 1222222233566899999998887634344447899999874442 44477788
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (288)
Q Consensus 192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (288)
.++.|..+++....+++++ +..|.+|+.....+-..+.
T Consensus 215 ~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 215 ISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 8999999998655465555 4569999987655555555
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.43 E-value=0.00012 Score=61.74 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=116.9
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--c------ccCcEEEEEEec-----CC-
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--G------HKDSVSSLAFSM-----DG- 119 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~- 119 (288)
-.|...+...+++|++++.+ +--++|.|..+|.+.|.|++....+..-. . ....++++.|.. ++
T Consensus 76 f~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 45666777779999999998 45599999999999999998877666522 1 234688888873 22
Q ss_pred --CEEEEEeCCCeEEEEeCC--C-CceeE----EeccCCCCEEEEE-EcCC--------------------CCEEEEecC
Q 023018 120 --QLLASGGLDGLVQIWDPS--S-GNLKC----TLEGPGGGVEWVS-WHPR--------------------GHIVLAGSE 169 (288)
Q Consensus 120 --~~l~~~~~dg~i~i~d~~--~-~~~~~----~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~ 169 (288)
-.+++|...|.+.+|.+. . +.... ....+.+++..+. ++.+ -+.+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 278899999999999764 1 21111 1123445555554 2211 022444555
Q ss_pred CCeEEEEECCcccEEEEeeccCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-ccccCeEEEE
Q 023018 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLT 243 (288)
Q Consensus 170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~ 243 (288)
...++++...+.+..++..........+.+- ..+..|++-..+|.|++|.+...+.+..+.... .....+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6889999998877666554222233344453 245668888899999999999888777665421 1223345567
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 023018 244 ISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
++++|..++..+. ..+.++.+
T Consensus 314 is~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SS-SEEEEEEE
T ss_pred ECCCCCEEEEeCc-ccEEEEEE
Confidence 7888987766543 34444444
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.42 E-value=0.00028 Score=60.10 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=95.3
Q ss_pred eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe-------ccCCCCEEEEEEcCC
Q 023018 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-------EGPGGGVEWVSWHPR 160 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~ 160 (288)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... ...+ ......+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 48888865 55666655444899999998754 55666789999999986333 1111 111222333333334
Q ss_pred CCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeE---------E-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018 161 GHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVT---------C-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (288)
Q Consensus 161 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~---------~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 229 (288)
| ++.-+.++.+++..--... ..+.+........ . ..++.+....+....++.+.+.+-...+. +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 5 3333344555554322211 1111110000000 0 12333333444444444555333222111 1
Q ss_pred cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
. ..+++..++.||++++|+.-..+|.+.+.+..-.+.+..+
T Consensus 214 ~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 214 D----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred c----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 1 2367999999999999999999999999887666665544
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=8e-05 Score=57.25 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=97.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (288)
..+++.|+..+.+.--|..+|+....... ..+|-+-+.- -|++++.|+..|.+++.+..+|..+..+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 34788899999999999999987765331 2223332222 477899999999999999999988888775443333445
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
..+++..++.|+.|+..+..|.++...+...+. ......+-+..|....|+++...|.+.-...++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 677899999999999999999999888777553 222222334455223334444455544444433
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.40 E-value=0.00011 Score=62.84 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=85.6
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (288)
.-..+.+....-....++++| +++++++++ +|...|+.....+... .+....++|.+.+ .+|+-...+.|.|
T Consensus 22 ~l~~k~lg~~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I 93 (443)
T PF04053_consen 22 PLSVKELGSCEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKI 93 (443)
T ss_dssp ----EEEEE-SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred eEEeccCCCCCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEE
Confidence 344455555566688999999 777777744 5888888854443322 2334568898855 5677777889999
Q ss_pred EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
+.--.......+.... .+..|.. |.+|+..+. +.|.+||..+++.++.+... +|..+.|++++.+++..+.+
T Consensus 94 ~kn~~~~~~k~i~~~~-~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPF-SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp EETTEE-TT-----SS--EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred EEcCccccceEEcCCc-ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-
Confidence 6332333323343222 2444433 777777665 48999999999999998743 48999999999999988855
Q ss_pred eEEEEeCC
Q 023018 214 TLRVWNPK 221 (288)
Q Consensus 214 ~i~i~d~~ 221 (288)
.+.|++..
T Consensus 166 ~i~il~~~ 173 (443)
T PF04053_consen 166 SIYILKYN 173 (443)
T ss_dssp SEEEEEE-
T ss_pred eEEEEEec
Confidence 57777643
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=7.9e-05 Score=63.63 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=84.2
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE
Q 023018 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (288)
Q Consensus 106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 185 (288)
.......+.++|+++++++ +.+|...||.....+.... +.....+|.+. ..+|+-...++|.++.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence 3445678999999998888 4578888888444433221 23456788884 457777778899997332333223
Q ss_pred EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 186 ~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
.++. ...+..|-. |..|+..+. +.|.+||..+++.++.+.. .+|..+.|++++.+++..+.+ .+++++.
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 3332 223444432 777777764 4899999999999999874 248999999999999888755 6788775
Q ss_pred CCC
Q 023018 266 TTG 268 (288)
Q Consensus 266 ~t~ 268 (288)
...
T Consensus 173 ~~~ 175 (443)
T PF04053_consen 173 NLE 175 (443)
T ss_dssp -HH
T ss_pred cch
Confidence 543
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.39 E-value=5.3e-05 Score=62.58 Aligned_cols=174 Identities=13% Similarity=0.151 Sum_probs=107.6
Q ss_pred CeEEEEEccCCeeeEeecc-ccCcEEEEEEe---cC----CCEEEEEeC---------C-CeEEEEeCCCC----ceeEE
Q 023018 87 DKGFFWRINQGDWASEIQG-HKDSVSSLAFS---MD----GQLLASGGL---------D-GLVQIWDPSSG----NLKCT 144 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~---~~----~~~l~~~~~---------d-g~i~i~d~~~~----~~~~~ 144 (288)
+.|++.|..+.+.+..+.- ....+++++.. .+ ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888887776665542 22344444433 22 457887753 2 89999999884 12221
Q ss_pred e--ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 145 L--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 145 ~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
+ ....++|++++-- ++. |+++.. +.|.+|++...+ ....-.. ....+.++... ++++++|..-..+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2346789888876 344 554443 899999998776 4433221 23356666554 679999998888887744
Q ss_pred CC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 221 KS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 221 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
.. ...+..+... .....++++.+-++++.++++..+|.+.++...
T Consensus 157 ~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 32 3334444322 134568888888666789999999999999887
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00056 Score=55.59 Aligned_cols=206 Identities=17% Similarity=0.129 Sum_probs=125.9
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-
Q 023018 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG- 147 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 147 (288)
+-.|.+..+.++.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++.. -+.+++..++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 34577755567777777888999998765432 222 2334455544444445555533 356667665555333221
Q ss_pred ----CCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 148 ----PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 148 ----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
.....+.+...|+|.+.++... -|.++.++. .+..++.+..+-...+.|+|||+++.|+.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 2245677888999887766544 134555554 455566665555566889999999988877654
Q ss_pred -CeEEEEeCCC--Cc---e-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEe----cceEEE
Q 023018 213 -ATLRVWNPKS--GE---N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVCCLN----FQYTCV 280 (288)
Q Consensus 213 -g~i~i~d~~~--~~---~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~t~~~~~~~----~~~~~~ 280 (288)
+.|.-|++.. +. . ...... ......-.++...+|.+.+++...| .|.+|+.. |+++..+ ...+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~--~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFD--EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEcc--CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 6788777642 21 1 111111 1334556678888888776555554 99999988 8888876 334555
Q ss_pred EE
Q 023018 281 AY 282 (288)
Q Consensus 281 ~~ 282 (288)
+|
T Consensus 261 ~F 262 (307)
T COG3386 261 AF 262 (307)
T ss_pred eE
Confidence 55
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=7.5e-06 Score=70.74 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-
Q 023018 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI- 226 (288)
Q Consensus 150 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~- 226 (288)
..+.--+++..+++++.|+..|.+++|+-..++. ..++ +..+.+..+..+++..++|.|+..|.|.++-+..+.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3455556677889999999999999998655543 3333 24455667778888888999999999999987664332
Q ss_pred --EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 227 --HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 227 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.....+..|...|++++|++++..|++|...|.|..-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22233334788999999999999999999999999998887
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3e-06 Score=72.27 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=80.1
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEE-EEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
...|.-+.|+| ...++|++..+|.|.++.+. .+.+.++..+...++ +++|.|+|+.||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34688899999 88899999999999999998 788888887777777 9999999999999999999999999998777
Q ss_pred EEec-cCCCCEEEEEEcC
Q 023018 143 CTLE-GPGGGVEWVSWHP 159 (288)
Q Consensus 143 ~~~~-~~~~~i~~~~~~~ 159 (288)
..+. .....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 2445688888864
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.30 E-value=0.0003 Score=54.95 Aligned_cols=209 Identities=15% Similarity=0.173 Sum_probs=130.8
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeeeEeeccccCcE--EEEEEecCCCEEEEEeC-----CCeEEEEeCC
Q 023018 66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGL-----DGLVQIWDPS 137 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 137 (288)
....++++|..+.-++.+..-|+ ..++|....+...++...++.- -.-.|+|+|.+|...-. -|.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34568889877777888777666 5788888776655554322211 12369999999887744 3789999987
Q ss_pred CC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCC------------------CeEEEEECCcccEEEEee----ccCCCe
Q 023018 138 SG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------STVWMWNADRAAYLNMFS----GHGSSV 194 (288)
Q Consensus 138 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~----~~~~~i 194 (288)
.+ +.+..+..|.-....+.|.++|+.++.+... -.+.+.|-.++.++.+.. .+...+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 4455677788788999999999998887531 123444444444433221 234567
Q ss_pred EEEEEcCCCCEEEEEeCCCe-----EEEEeCCCCceeEEEcCCCc----cccCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 023018 195 TCGDFTPDGKTICTGSDDAT-----LRVWNPKSGENIHVIRGHPY----HTEGLTCLTISA-DSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 264 (288)
+.++..++|..++-+-..|. -.+=-.+.++.+..+...+. ....|-+++.+. ++...+++-..+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888776665544332 11111223444443332210 123466777776 444455555667788999
Q ss_pred cCCCcEEEEe
Q 023018 265 ITTGKVCCLN 274 (288)
Q Consensus 265 ~~t~~~~~~~ 274 (288)
..||.++..-
T Consensus 309 a~tG~vv~~a 318 (366)
T COG3490 309 AATGAVVSEA 318 (366)
T ss_pred cCCCcEEecc
Confidence 9999988654
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.6e-05 Score=65.56 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=96.8
Q ss_pred CCCE-EEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-------EEEEecCCCeEEEEECCcc-c-EEEEe
Q 023018 118 DGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRA-A-YLNMF 187 (288)
Q Consensus 118 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~-~-~~~~~ 187 (288)
+.++ |.++..-..++-.|+..|+.+.....+.. |.-+.+.|+.+ .-+.|-.+..|.-||+|-. + .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3443 44555556788889999999999887766 77777877543 2345667889999998742 2 22222
Q ss_pred ecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018 188 SGH----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (288)
Q Consensus 188 ~~~----~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 262 (288)
+.| .....|.+-..+ .++++|+.+|.|++||. .+.. ...+++ ...+|..+..+.+|.+|++.| +..+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg---LG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG---LGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc---cCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 222 233455554444 58999999999999997 4433 333444 678999999999999987665 556666
Q ss_pred EEcC
Q 023018 263 VNIT 266 (288)
Q Consensus 263 wd~~ 266 (288)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 6653
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=0.00012 Score=64.02 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=76.3
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCC-----CceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccE------
Q 023018 116 SMDGQLLASGGLDGLVQIWDPSS-----GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAY------ 183 (288)
Q Consensus 116 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------ 183 (288)
.++|++...+ ++.|.+.|..+ .+.+..+.... ....+.++|+|+++++++. +.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3467766653 57899999988 45555565444 4788999999998877765 88999999987542
Q ss_pred ------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 184 ------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 184 ------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
+..... .......+|.++|....+...|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333 23344568999998888888899999999875
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.28 E-value=0.00017 Score=60.36 Aligned_cols=184 Identities=15% Similarity=0.183 Sum_probs=104.1
Q ss_pred CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-----------------
Q 023018 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----------------- 148 (288)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------- 148 (288)
.+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...+.-...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 46799999998765554443 66788899999999988875 678999998777443322111
Q ss_pred CCCEEEEEEcCCCCEEEEecCC-C-----------------------------------eEEEEECCcccEE--EEe---
Q 023018 149 GGGVEWVSWHPRGHIVLAGSED-S-----------------------------------TVWMWNADRAAYL--NMF--- 187 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~i~d~~~~~~~--~~~--- 187 (288)
-+.-..+.|+|++++|+....| . .+.++++.+++.. ...
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1223568899999988875432 1 1233444333321 111
Q ss_pred eccCCCeEEEEEcCCCCEEEEEe--CCC---eEEEEeCCCCceeEEEcCCC-ccccCeEEEEEc-CCC-CEEEEEeCCC-
Q 023018 188 SGHGSSVTCGDFTPDGKTICTGS--DDA---TLRVWNPKSGENIHVIRGHP-YHTEGLTCLTIS-ADS-TLALSGSKDG- 258 (288)
Q Consensus 188 ~~~~~~i~~~~~~p~~~~l~~~~--~dg---~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~-~~l~~~~~dg- 258 (288)
......+..+.|.+++..|+... .+. .+.++|..++.......... .--..-....+. +++ .+|.....+|
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 12234578889999888444433 222 46777887765543332210 011112234443 544 4555555676
Q ss_pred -cEEEEEcCCCcEE
Q 023018 259 -SVHMVNITTGKVC 271 (288)
Q Consensus 259 -~i~iwd~~t~~~~ 271 (288)
.|++++..++...
T Consensus 260 ~hly~~~~~~~~~~ 273 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR 273 (353)
T ss_dssp EEEEEEETTSSEEE
T ss_pred cEEEEEccccccee
Confidence 4666666666544
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=7.6e-06 Score=69.88 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (288)
Q Consensus 150 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~ 228 (288)
..+.-+.|+|.-.+||++..+|.|.+..+. .+.+.++..++..++ +++|.|+|+.|++|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 458889999999999999999999999887 777888887777777 999999999999999999999999999877665
Q ss_pred EcCCCccccCeEEEEEcC
Q 023018 229 IRGHPYHTEGLTCLTISA 246 (288)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~ 246 (288)
.... ....|.++.|+|
T Consensus 100 ~~~s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFS--VETDISKGIWDR 115 (665)
T ss_pred cccc--cccchheeeccc
Confidence 3211 455677777763
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.26 E-value=0.00082 Score=55.56 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=107.1
Q ss_pred CcEEEEEeC----------CCeEEEEEccCC----eeeEee--ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 77 ATLVATGGG----------DDKGFFWRINQG----DWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 77 ~~~l~~~~~----------dg~i~iw~~~~~----~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (288)
..++++|+. .|.|.++++... ..+..+ ....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 567777754 289999999884 122221 2357889998876 34 455544 5889999998877
Q ss_pred -eeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-ccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 141 -LKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 141 -~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
...... .....+.++... ++++++|..-..+.++..+. ...+..+. .....++++.+-++++.++.+..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 433322 123356666665 56999998888888774432 22122222 234568888888766799999999999
Q ss_pred EEEeCCC-------Cc-eeEEEcCCCccccCeEEE---EEcC--CC------CEEEEEeCCCcEEEE
Q 023018 216 RVWNPKS-------GE-NIHVIRGHPYHTEGLTCL---TISA--DS------TLALSGSKDGSVHMV 263 (288)
Q Consensus 216 ~i~d~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~~~dg~i~iw 263 (288)
.++.... +. .+....... ....|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9987642 22 222222211 34567776 4444 12 247778889988843
No 359
>PHA02713 hypothetical protein; Provisional
Probab=98.17 E-value=0.0002 Score=63.56 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=98.3
Q ss_pred CCcEEEEEeCC------CeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCcee
Q 023018 76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (288)
Q Consensus 76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 142 (288)
++.+++.||.+ ..+..||..+...... +....... +++ .-+++..+.|+.++ .+..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45667777753 3477788777654322 11111111 222 23677777787654 4788998876543
Q ss_pred EE--eccCCCCEEEEEEcCCCCEEEEecCCC-----------------------eEEEEECCcccE--EEEeeccCCCeE
Q 023018 143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAY--LNMFSGHGSSVT 195 (288)
Q Consensus 143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~--~~~~~~~~~~i~ 195 (288)
.. +.........+.. ++++++.|+.++ .+..||.++.+- +..+........
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 22 2222222222233 577888887642 477788776532 222211111111
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcC
Q 023018 196 CGDFTPDGKTICTGSDD------ATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNIT 266 (288)
Q Consensus 196 ~~~~~p~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 266 (288)
.+.+ ++...+.|+.+ ..+..||..+ .+ ...+...+........+.+ ++.+.++|+.+| .+..||..
T Consensus 459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 1222 45666667654 2467899886 33 2223222212222222222 678888998888 78888888
Q ss_pred CCcEE
Q 023018 267 TGKVC 271 (288)
Q Consensus 267 t~~~~ 271 (288)
|.+-.
T Consensus 534 ~~~W~ 538 (557)
T PHA02713 534 TYEWN 538 (557)
T ss_pred ccccc
Confidence 87643
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.15 E-value=0.0028 Score=55.88 Aligned_cols=185 Identities=10% Similarity=0.190 Sum_probs=113.0
Q ss_pred CCeEEEEEccCCeeeEeecccc-------------------------------CcE-EEEEEecCCCEEEEEeCC-----
Q 023018 86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSV-SSLAFSMDGQLLASGGLD----- 128 (288)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i-~~~~~~~~~~~l~~~~~d----- 128 (288)
+|.|..+|..+++.+-.+..-. ..+ ..+++.|...+++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 6889999999988766543211 011 133566666666655421
Q ss_pred C-----------eEEEEeCCCCceeEEeccCCC---------CEEEEEEcCCCC---EEEEecCCCeEEEEECCcccEEE
Q 023018 129 G-----------LVQIWDPSSGNLKCTLEGPGG---------GVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAYLN 185 (288)
Q Consensus 129 g-----------~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 185 (288)
+ .|.-.|+++|+....++.... ...-+....+|+ .++.++++|.++++|-++++++.
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 2 577778999998877764221 122233334565 78899999999999999998762
Q ss_pred E--------ee---c-cC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------
Q 023018 186 M--------FS---G-HG-SSV----------------------------TCGDFTPDGKTICTGSDD------------ 212 (288)
Q Consensus 186 ~--------~~---~-~~-~~i----------------------------~~~~~~p~~~~l~~~~~d------------ 212 (288)
. +. . .. .++ ..++++|...+++....+
T Consensus 340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~ 419 (527)
T TIGR03075 340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY 419 (527)
T ss_pred cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence 1 10 0 00 000 125566655555443322
Q ss_pred ---------------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 213 ---------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 213 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
|.|.-+|+.+++........... ..+. ..-.+.+++.++.+|.++.+|.+||+.+
T Consensus 420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 45777888888777665532111 1111 1124557778888999999999999999
Q ss_pred EEe
Q 023018 272 CLN 274 (288)
Q Consensus 272 ~~~ 274 (288)
...
T Consensus 496 w~~ 498 (527)
T TIGR03075 496 WKF 498 (527)
T ss_pred EEE
Confidence 876
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.13 E-value=0.00076 Score=45.26 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=70.2
Q ss_pred EEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 67 v~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
|++|++.. ++...|++|+.|..|++|+-. ..+..+. -...|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 66777665 344788999999999999854 5666666 3456777776655 579999999999999753 3344
Q ss_pred EeccCCCCEEEEEEcC-CC---CEEEEecCCCeEE
Q 023018 144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW 174 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 174 (288)
+.+.... +.++++.. ++ ..|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443333 56665544 32 2788888888774
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.13 E-value=0.00025 Score=62.92 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=94.8
Q ss_pred CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe------CCC--eEEEEeCCCCceeEEeccCCCCEEEEEE
Q 023018 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (288)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 157 (288)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++... .+. .|.+++.. +.. ..+... .....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceE
Confidence 56664433222222222223334678899999999877665 243 45555542 222 223222 23788999
Q ss_pred cCCCCEEEEecCC------------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE---EeCCC
Q 023018 158 HPRGHIVLAGSED------------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKS 222 (288)
Q Consensus 158 ~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i---~d~~~ 222 (288)
+|+|..+++.... +.+.+.++..+.... .....|..+.|||||.+++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776532 233333443333222 2356799999999999988766 577776 44444
Q ss_pred CceeEE-----EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018 223 GENIHV-----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (288)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 264 (288)
|. ... +.. .....+..+.|..++.++ ++..++...+|.
T Consensus 481 G~-~~l~~~~~l~~--~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 481 GQ-YALTNPREVGP--GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred Cc-eeecccEEeec--ccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 43 111 111 122345789999988855 544444444444
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.0033 Score=55.45 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=120.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeecccc-CcEE----------EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVS----------SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (288)
..+++++.++.|+-.|..+++.+-.+.... ..+. .+++ .+..++.++.++.|.-+|..+|+.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 355667777899999999998877765211 1111 1122 23467778889999999999999887655
Q ss_pred cCCCC-EEEEEEcC--CCCEEEEecC------CCeEEEEECCcccEEEEeeccCC-------------------------
Q 023018 147 GPGGG-VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGS------------------------- 192 (288)
Q Consensus 147 ~~~~~-i~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------------------------- 192 (288)
..... -..+.-+| .+..++++.. +|.|..+|.++++.+..+..-..
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 32110 01111122 1234555432 68999999999988766542111
Q ss_pred ------Ce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCceeEEEcCCCccc-------cCeEEE
Q 023018 193 ------SV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHPYHT-------EGLTCL 242 (288)
Q Consensus 193 ------~i-~~~~~~p~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~ 242 (288)
.+ ..+++.|...+|+.+... + .|.-.|+++|+....++..+ |. ....-+
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILF 306 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEE
Confidence 11 134666666677766522 2 57778999999887766432 11 112223
Q ss_pred EEcCCCC---EEEEEeCCCcEEEEEcCCCcEEE
Q 023018 243 TISADST---LALSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 243 ~~~~~~~---~l~~~~~dg~i~iwd~~t~~~~~ 272 (288)
.+..+|+ .++.+..+|.+++.|-.||+++.
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 3334665 78899999999999999999874
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.10 E-value=0.001 Score=55.75 Aligned_cols=217 Identities=18% Similarity=0.221 Sum_probs=119.4
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-c-------c---------cCcEEEEEEecCCCEEEEEe
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-G-------H---------KDSVSSLAFSMDGQLLASGG 126 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~-------~---------~~~i~~~~~~~~~~~l~~~~ 126 (288)
...+....|+| +++.+|... ++.|++++..++...+.-. + - -+.-..+.|+|++++||...
T Consensus 42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56788899999 566766655 4789999987764433211 1 0 11225688999999888764
Q ss_pred CC-Ce-----------------------------------EEEEeCCCCceeEE-e----ccCCCCEEEEEEcCCCCEEE
Q 023018 127 LD-GL-----------------------------------VQIWDPSSGNLKCT-L----EGPGGGVEWVSWHPRGHIVL 165 (288)
Q Consensus 127 ~d-g~-----------------------------------i~i~d~~~~~~~~~-~----~~~~~~i~~~~~~~~~~~l~ 165 (288)
.| .. +.|+++.+++.... . ......+..+.|.+++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 32 11 33344544443211 1 12334578889999888444
Q ss_pred Eec--CC---CeEEEEECCcccEEEEeec-cCCCe---EEEEEc-CCCC-EEEEEeCCC--eEEEEeCCCCceeEEEcCC
Q 023018 166 AGS--ED---STVWMWNADRAAYLNMFSG-HGSSV---TCGDFT-PDGK-TICTGSDDA--TLRVWNPKSGENIHVIRGH 232 (288)
Q Consensus 166 ~~~--~d---g~i~i~d~~~~~~~~~~~~-~~~~i---~~~~~~-p~~~-~l~~~~~dg--~i~i~d~~~~~~~~~~~~~ 232 (288)
..- .+ -.+.++|..++.....+.. ....| ....+. +++. +|.....+| .|.+++...+.. ..+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~- 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTS- 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS--
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecccc-
Confidence 432 22 2467778876644332221 22222 344554 5554 455555667 466667765553 34433
Q ss_pred CccccCeEE-EEEcCCCCEE-EEEeCC----CcEEEEEcC-CCcEEEEe--cc-eEEEEEeecc
Q 023018 233 PYHTEGLTC-LTISADSTLA-LSGSKD----GSVHMVNIT-TGKVCCLN--FQ-YTCVAYDLDF 286 (288)
Q Consensus 233 ~~~~~~v~~-~~~~~~~~~l-~~~~~d----g~i~iwd~~-t~~~~~~~--~~-~~~~~~~~df 286 (288)
....|.. +.|+++++.| +++..+ ..|+..++. ++++.+.. .. +..+.|||+.
T Consensus 278 --G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 278 --GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp --SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred --CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 3445644 6788876554 455543 367777778 55555544 22 3478888774
No 365
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=0.0017 Score=51.16 Aligned_cols=169 Identities=13% Similarity=0.174 Sum_probs=112.4
Q ss_pred ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (288)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 182 (288)
.+-...+.++.|+|+.+.|++......-.|+=...|+.+.+++-. -...-.|.|..++.+.++--.++.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999998888887777777777788888877532 2235567888777777777778888888775542
Q ss_pred EEEE----------eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE---cCCC----ccccCeEEEEEc
Q 023018 183 YLNM----------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI---RGHP----YHTEGLTCLTIS 245 (288)
Q Consensus 183 ~~~~----------~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~----~~~~~v~~~~~~ 245 (288)
.+.. ....+...-.++|.|....|+.+=.-.-+.||....+...... ..+. ..-..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2111 1122567789999999999998888887888766533211111 1100 012346778888
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 246 A-DSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 246 ~-~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+ .+.+|+-+.+++.+.-.|.. |.++..
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeee
Confidence 7 56677777777777777765 444443
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.07 E-value=0.00099 Score=59.26 Aligned_cols=187 Identities=13% Similarity=0.156 Sum_probs=101.2
Q ss_pred CCEEEEEEcCCCCcEEEEEe-----CCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---------
Q 023018 65 DEVYSVACSPTDATLVATGG-----GDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD--------- 128 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~-----~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 128 (288)
..+...+++|++...+++.. .|+ .|.+++.. +.......+ ...+.-.|+|+|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 35778899995444444442 244 44444542 222222232 237788999998877766432
Q ss_pred ---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEE---EECCccc-EE---EEee-ccCCCeEEE
Q 023018 129 ---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAA-YL---NMFS-GHGSSVTCG 197 (288)
Q Consensus 129 ---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~-~~~~~i~~~ 197 (288)
+.+.+.++..+.... ...+.|..+.|+|+|..++.... |.|++ -....+. .+ ..+. .....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 233333443332222 22456999999999998887764 77777 4433443 11 1122 233346889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018 198 DFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (288)
Q Consensus 198 ~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 262 (288)
.|.+++.++ ++..++.-.+|.+.- |.....+... ....++..++-++. -|+....+|.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~-n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR-NLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCC-CccCceEEEecCCc--eEEEEcCCceEEe
Confidence 999988754 555545444454321 2222222221 13456777777763 4555566664444
No 367
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.04 E-value=0.0045 Score=50.16 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=86.1
Q ss_pred EeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC-C
Q 023018 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-D 179 (288)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~ 179 (288)
.......+.+..+.-+++|++++++.....+.-|+.....-...-+.....|..+.|.|++.+.+++ ..|.|++=+. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3344456778888889999999888766666678755433333333455789999999998776655 7788888772 2
Q ss_pred cccEEE----EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018 180 RAAYLN----MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 180 ~~~~~~----~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
....-. .+....-.+..++|.+++...++|+ .|.+ +.....|+..............+..+.|.+..+-++ .+
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 222111 1112333578999998877666555 5544 455566777666654333455688888876555544 45
Q ss_pred CCCcEEEE
Q 023018 256 KDGSVHMV 263 (288)
Q Consensus 256 ~dg~i~iw 263 (288)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78877655
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0074 Score=51.58 Aligned_cols=173 Identities=10% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-------cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (288)
+.|.++.|.. +..++ +-..||.+++|++.... ...+. .....+....+..+| ++.-..++.+.+..-.
T Consensus 81 ~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTD-DEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECC-CCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCc
Confidence 6777888876 44444 55678999999986333 11111 112222222333344 3333345555544322
Q ss_pred CCc-eeEEecc-CC--C------CEEE-EEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 138 SGN-LKCTLEG-PG--G------GVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 138 ~~~-~~~~~~~-~~--~------~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
... ....+.. +. . .... ..++.+....+....++.+.+.+-...+. +. ..+++..|+.||+++++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFI 231 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEE
Confidence 211 1111110 10 0 0000 12333333444444445555443322111 11 24689999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (288)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (288)
|.-..+|.+.+....-.+....+... .......+.|+-+.
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGND 271 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCC
Confidence 99999999998876544554444432 23445566676543
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.00 E-value=0.0016 Score=43.78 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=69.7
Q ss_pred EEEEEEcC---C-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 152 VEWVSWHP---R-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (288)
Q Consensus 152 i~~~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~ 227 (288)
|+++++.. + .+.|++|+.|..|++|+- ...+..+. ....|++++-... ..++.+..+|+|-+|+-. +.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55666654 2 258999999999999974 45666666 3456777776655 678889999999999853 3444
Q ss_pred EEcCCCccccCeEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 023018 228 VIRGHPYHTEGLTCLTISA-D--S-TLALSGSKDGSVHM 262 (288)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~i 262 (288)
.+. .+..+.++.+.. + | .-|++|-.+|.|-+
T Consensus 76 RiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444 234466666554 3 2 36888888887743
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00037 Score=58.87 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=95.5
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-------EEEEEeCCCeEEEEeCCCCce--eEEeccC-
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGNL--KCTLEGP- 148 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~~~~- 148 (288)
++.++.....|+-.|+..|+.+.....+.. |+-+.+.|+.+ .=+.|-.+..|.-||.+-... +...+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344455556688888899999988886665 77778887654 224556678899999874332 1111111
Q ss_pred ---CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 149 ---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 149 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
.....|.+-..+| +|++|+.+|.|++||--..+....+.+...+|..+..+.+|.+|+..+ +..|.+.++
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2235555554444 899999999999999633344556778889999999999999987666 456666654
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=2.5e-05 Score=41.46 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=33.6
Q ss_pred CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 023018 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR 93 (288)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 93 (288)
++...+..|...|.+++|++ ...++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45677889999999999999 668999999999999996
No 372
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.97 E-value=0.014 Score=53.63 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=121.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeeccccC--------cEEEEEEec----------------CCCEEEEEeCCCeEEE
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFSM----------------DGQLLASGGLDGLVQI 133 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~i 133 (288)
..++.++.++.|+-.|..+++.+-++..... ....+.+.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 3566777789999999999988777653211 012233321 2347888889999999
Q ss_pred EeCCCCceeEEeccCCCCE-------------EEEEEcC--CCCEEEEecC----------CCeEEEEECCcccEEEEee
Q 023018 134 WDPSSGNLKCTLEGPGGGV-------------EWVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFS 188 (288)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 188 (288)
.|..+|+.+..+... +.+ ..+.-.| .+..+++|+. .|.|+-+|.++|+.+..+.
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999988766421 111 1112222 2345666642 6889999999999887764
Q ss_pred cc---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeEEEcCC
Q 023018 189 GH---------GS--------SV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGH 232 (288)
Q Consensus 189 ~~---------~~--------~i-~~~~~~p~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~ 232 (288)
.- .+ .+ ..+++.|....++.+. ..+.|.-.|+++|+....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 00 01 2344555444444422 1345677788888887766542
Q ss_pred Ccc-------ccCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 233 PYH-------TEGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 233 ~~~-------~~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
. | .....-+.+.. +|+ .++.++.+|.++++|-+||+.+...
T Consensus 434 ~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 H-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred C-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1 1 01111222322 553 7889999999999999999998764
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.97 E-value=0.0059 Score=49.23 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred CCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe---------
Q 023018 76 DATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--------- 145 (288)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------- 145 (288)
.+..|+.|+.+| |++++... ....... +..+|..+...|+-+.|++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 456788889888 99999833 3333333 233499999999887766665 599999998754433310
Q ss_pred -----ccCCCCEEEEE--EcCCC-CEEEEecCCCeEEEEECCcc-----cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 146 -----EGPGGGVEWVS--WHPRG-HIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 146 -----~~~~~~i~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
......+...+ -...+ ..|+++.. ..|.+|..... +..+.+. ....+..++|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 01122344444 11233 34444444 68888877542 3455554 34678889998 5677777654
Q ss_pred CeEEEEeCCCCce
Q 023018 213 ATLRVWNPKSGEN 225 (288)
Q Consensus 213 g~i~i~d~~~~~~ 225 (288)
+ ..+.|+.++..
T Consensus 158 ~-f~~idl~~~~~ 169 (275)
T PF00780_consen 158 G-FYLIDLNTGSP 169 (275)
T ss_pred c-eEEEecCCCCc
Confidence 4 67778775543
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.93 E-value=0.0058 Score=47.99 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=110.7
Q ss_pred eeeEeeccccC--cEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEecCCCe
Q 023018 98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDST 172 (288)
Q Consensus 98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~ 172 (288)
+.+.+++ |.. -...+.|..++.++-+.+.-| .|+.+|+.+++......-+.. ---.++.. +++++...-.++.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 3445555 433 235677767787777777666 799999999987766543322 12233443 3445555667899
Q ss_pred EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCE
Q 023018 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTL 250 (288)
Q Consensus 173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 250 (288)
..+||..+.+.+.++... +.-+.++ .+++.|+.+.....|+++|..+.+..+.+.... ..-..++-+.|- +|.+
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 999999999888888643 4556666 467888888888999999999888777665431 112345566776 5766
Q ss_pred EEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 251 ALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 251 l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+-.=....|...|..||++...+
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEE
Confidence 666656778999999999999876
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=4.9e-05 Score=40.23 Aligned_cols=38 Identities=39% Similarity=0.818 Sum_probs=33.6
Q ss_pred cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
+++..+..|...+.++.|.+.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666777888999999999999999999999999996
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=5.9e-05 Score=68.48 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=79.3
Q ss_pred CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccC
Q 023018 160 RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238 (288)
Q Consensus 160 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (288)
.+..++.|+..|.+...|+... .+...-....++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+......
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4668999999999999998653 222222234679999999999999999999999999999999888888765444445
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 239 LTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
+..+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555666666777888877776 5544
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.88 E-value=0.0087 Score=50.63 Aligned_cols=82 Identities=9% Similarity=0.148 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----------------CC-EEE
Q 023018 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----------------ST-LAL 252 (288)
Q Consensus 191 ~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~-~l~ 252 (288)
...+.+++.+|.+++.++...=|.|.++|+.++..++.+++.. ...+.-+..... .. +++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 4457889999999998888888999999999998887777642 222222211111 11 233
Q ss_pred EEeCCCcEEEEEcCCCcEEEEe
Q 023018 253 SGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 253 ~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
-+-.-|.|-||.+++|..+..+
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEE
Confidence 4566899999999999998876
No 378
>PHA03098 kelch-like protein; Provisional
Probab=97.85 E-value=0.002 Score=57.28 Aligned_cols=186 Identities=13% Similarity=0.205 Sum_probs=93.1
Q ss_pred CCcEEEEEeCCC------eEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 023018 76 DATLVATGGGDD------KGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLK 142 (288)
Q Consensus 76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 142 (288)
++.+++.|+.++ .+..||..+.+....- .........+. -++..++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776543 4777888776653321 11111112222 256677777754 35778888776543
Q ss_pred EE--eccCCCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018 143 CT--LEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD 212 (288)
Q Consensus 143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d 212 (288)
.. +........... -++++++.|+.. ..+..||+.+.+-.. .+....... ++.. .++..++.|+..
T Consensus 372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCcc
Confidence 22 111111122222 256777777732 458889987653221 111111111 1222 245555666542
Q ss_pred --------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcE
Q 023018 213 --------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKV 270 (288)
Q Consensus 213 --------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~ 270 (288)
..+.+||+.+.+-. .+...+........+.+ ++.+++.|+.+ +.|.+||..+.+-
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCCcccceEEEecCCCCcee-eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 23888998865432 22221111111122222 66777777654 4789999887653
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=3.5e-05 Score=58.01 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=76.2
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEE-EE
Q 023018 122 LASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTC-GD 198 (288)
Q Consensus 122 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~-~~ 198 (288)
+...+.+|.|+-++++..+...... -+.....-+. -+..+++|+.+|.|++|...... ....+......|-+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3444567888777766543322111 1111111122 35689999999999999875221 11111112223332 22
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEEcC
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSG--SKDGSVHMVNIT 266 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 266 (288)
-..++.+..+++.+|.|+.|++.-.+.+..... |. .++..+..+..+.+|..+ +.|..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeecc---ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 223556788999999999999987776655554 33 333333334344455554 555566666654
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.79 E-value=0.013 Score=47.70 Aligned_cols=202 Identities=15% Similarity=0.098 Sum_probs=120.4
Q ss_pred EEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeeeEeecccc---C----cEEEEEEecCCCEEEEEe--CCC
Q 023018 69 SVACSPTDATLVATG----------GGDDKGFFWRINQGDWASEIQGHK---D----SVSSLAFSMDGQLLASGG--LDG 129 (288)
Q Consensus 69 ~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~---~----~i~~~~~~~~~~~l~~~~--~dg 129 (288)
.+..+| +++.++++ -..-.|.+||..+..+...+.-.. . ....+.++.+++++++.. -..
T Consensus 40 ~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 356788 56665553 223459999999987776543211 1 123457888999877663 456
Q ss_pred eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEEEEe----eccCCCe-EEEEEcCCC
Q 023018 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMF----SGHGSSV-TCGDFTPDG 203 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~i-~~~~~~p~~ 203 (288)
.|.|.|+..++.+..+..+. +..+--.+ .+-|.+-|.||.+.-..+. .|+...+. .....++ ..-.+...+
T Consensus 119 SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 89999999999988877553 33332222 3467788889999888887 45544222 1122222 233445555
Q ss_pred CEEEEEeCCCeEEEEeCCCCcee--EEEcCC-------CccccCeEEEEEcCCCCEEEEEeC---CC-------cEEEEE
Q 023018 204 KTICTGSDDATLRVWNPKSGENI--HVIRGH-------PYHTEGLTCLTISADSTLALSGSK---DG-------SVHMVN 264 (288)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~iwd 264 (288)
..++..+..|.|+-.|+...... ..+... ....+...-+++++....|++.-. +| .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 66666788999999988754321 122111 112233455778875555554321 11 699999
Q ss_pred cCCCcEEEEe
Q 023018 265 ITTGKVCCLN 274 (288)
Q Consensus 265 ~~t~~~~~~~ 274 (288)
+.+++++..+
T Consensus 276 ~~t~krv~Ri 285 (342)
T PF06433_consen 276 LKTHKRVARI 285 (342)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999999987
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00018 Score=65.42 Aligned_cols=97 Identities=25% Similarity=0.302 Sum_probs=74.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018 118 DGQLLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (288)
Q Consensus 118 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (288)
.+..++.|+..|.+...|.... .+...=....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999999887654 211222234578999999999999999999999999999999999988877766555
Q ss_pred EE---EcCCCCEEEEEeCCCe
Q 023018 197 GD---FTPDGKTICTGSDDAT 214 (288)
Q Consensus 197 ~~---~~p~~~~l~~~~~dg~ 214 (288)
+- +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 43 4445667888877775
No 382
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.002 Score=54.50 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=90.9
Q ss_pred cCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-------EEEEecCCCeEEEEECCcc-cEEEEe
Q 023018 117 MDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRA-AYLNMF 187 (288)
Q Consensus 117 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~-~~~~~~ 187 (288)
.+..+|+ .|.....++-.|+..|+.+..+..+... -+.|.|..+ .-++|-.+..|.-.|.|-. ..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444443 4555667888899999999988877663 577777432 3445556666666676542 222222
Q ss_pred eccCCCeEEEEEc----CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018 188 SGHGSSVTCGDFT----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (288)
Q Consensus 188 ~~~~~~i~~~~~~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 263 (288)
. ....++.-.|+ ....++++++..|-|++||.-.-.....+++ ....|..+..+.+|.++++.|. ..+.+-
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---LGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---cccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 1 11222222222 2456899999999999999653333333444 5678999999999998887764 467777
Q ss_pred EcC
Q 023018 264 NIT 266 (288)
Q Consensus 264 d~~ 266 (288)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 764
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.70 E-value=0.013 Score=46.59 Aligned_cols=147 Identities=21% Similarity=0.196 Sum_probs=88.5
Q ss_pred cEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE-CCcccEE
Q 023018 109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYL 184 (288)
Q Consensus 109 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~ 184 (288)
.+.+.+++++++.++... ....+.++.. +.....+. ....+....|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678999999999776655 3345555543 33222222 223688889999987777766666666663 3333221
Q ss_pred -EEeec--cCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CCceeE---EEcCCCccccCeEEEEEcCCCCEEE
Q 023018 185 -NMFSG--HGSSVTCGDFTPDGKTICTGS---DDATLRVWNPK---SGENIH---VIRGHPYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 185 -~~~~~--~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~---~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (288)
..... ....|+.+.+||+|.+++... .++.|.+--+. .+.... .+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11111 112899999999999987665 34667665432 221111 1111111346789999999988877
Q ss_pred EEeCCC
Q 023018 253 SGSKDG 258 (288)
Q Consensus 253 ~~~~dg 258 (288)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665543
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.69 E-value=0.0054 Score=54.61 Aligned_cols=192 Identities=19% Similarity=0.315 Sum_probs=105.7
Q ss_pred EEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCC-----eEEEE
Q 023018 68 YSVACSPTDATLVATGGGD------DKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG-----LVQIW 134 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~ 134 (288)
.+++.. ++.+.++|+.+ ..+..||..+.+....-. ....... ++ .-+|...|+|+.|| ++-.|
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEe
Confidence 344444 45788889888 347788887776554221 1111111 11 22677888998886 46678
Q ss_pred eCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCC------eEEEEECCccc--EEEEeeccCCCeEEEEEcCCCC
Q 023018 135 DPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGK 204 (288)
Q Consensus 135 d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~ 204 (288)
|..+.+....-. ..........+ +|.+.++|+.++ ++..||..+.+ .+..+...........+ ++.
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~ 477 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGK 477 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCE
Confidence 877665433221 12222222333 678888888654 57788887654 22222222222222222 466
Q ss_pred EEEEEeCCC-----eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcE
Q 023018 205 TICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKV 270 (288)
Q Consensus 205 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~ 270 (288)
..+.|+.++ +|..||..+.+-.. +.........+..+.+ ++.+.++|+.|| +|..||..+.+-
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~-v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTM-VAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeE-cccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 777787776 37789988765332 2322112222222222 566777888776 577788776653
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.65 E-value=0.021 Score=46.03 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=109.8
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee--------------ccccCcEEEEE--EecCCC-EEEEEeCC
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------------QGHKDSVSSLA--FSMDGQ-LLASGGLD 128 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~~~~i~~~~--~~~~~~-~l~~~~~d 128 (288)
+|..+...|.-+.+++.+ |+.++++++......... ......+...+ -...+. +|+++. .
T Consensus 37 ~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k 113 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K 113 (275)
T ss_pred eEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C
Confidence 399999998444444433 499999998764433311 11223444444 112333 444444 4
Q ss_pred CeEEEEeCCCC-----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc------------C
Q 023018 129 GLVQIWDPSSG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH------------G 191 (288)
Q Consensus 129 g~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~ 191 (288)
..|.+|..... +..+.+..+ ..+.+++|. ++.++.|.. ....+.|+.++.....+... .
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58888877653 455555544 568899998 567777775 55888898876544333211 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (288)
Q Consensus 192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~ 269 (288)
.++..+.. +++.+|++. +..-.+.|. .|++.+ .+. -...+.++++. ..+|++.+. +.|.||++.+|+
T Consensus 190 ~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 190 KPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence 23333333 345556543 333334444 454433 222 12344556654 347777655 559999999999
Q ss_pred EEEEe
Q 023018 270 VCCLN 274 (288)
Q Consensus 270 ~~~~~ 274 (288)
+++.+
T Consensus 259 lvQ~i 263 (275)
T PF00780_consen 259 LVQTI 263 (275)
T ss_pred EEEEE
Confidence 99887
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.023 Score=46.40 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=103.6
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEeecc-----ccCcEEEEEEecCCCEEEEEeC-----------CCeEEEEeCCCCce
Q 023018 78 TLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWDPSSGNL 141 (288)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~ 141 (288)
..|+++. .-+.+++..++..+..+.. .....+.+...|+|.+.++... -|.|+.++. .+..
T Consensus 78 g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~ 154 (307)
T COG3386 78 GRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV 154 (307)
T ss_pred CeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE
Confidence 3444443 2366677765554322211 1234567888899886655433 133444443 5666
Q ss_pred eEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCc--c----c-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A----A-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
...+..+-...+.|+|||+++.|+.+.. .+.|.-|++.. + + ....+....+..-.++...+|.+.+++...|
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 6666655556788999999987777655 47888887752 1 1 1122222345556677778888776555554
Q ss_pred -eEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEE
Q 023018 214 -TLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSG 254 (288)
Q Consensus 214 -~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 254 (288)
.|.+|+.. |+++..+.. ....+++++|- |+.+.|++.
T Consensus 235 ~~v~~~~pd-G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKL---PVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ceEEEECCC-CcEEEEEEC---CCCCCccceEeCCCcCEEEEE
Confidence 89999988 888888876 33567777775 344555443
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.026 Score=46.93 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=106.5
Q ss_pred CCCCCeeEeecCCCCEEEEE-----EcCCCCcEEEEEeCCCe--EEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE
Q 023018 52 QPDDSTHIFSGHSDEVYSVA-----CSPTDATLVATGGGDDK--GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS 124 (288)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 124 (288)
..+..+..|..+......+- |.+++.++|+.+..+|. +++.|+.+++..+.-.+.........++|+.+.++-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 34455555655544444443 44545567777766654 666778887765544432222224567788887766
Q ss_pred EeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEc--CCCCEEEEecC----------------------CCeEEEEECCc
Q 023018 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGSE----------------------DSTVWMWNADR 180 (288)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~----------------------dg~i~i~d~~~ 180 (288)
......|+-.|+.+.+....+..+....-...|. .++..++-.-. ...|.-.|+++
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 6556788999999998777777676656556664 34555433211 12466667777
Q ss_pred ccEEEEeeccCCCeEEEEEcCCC-CEEEEEeC---CC-eEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018 181 AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSD---DA-TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (288)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (288)
++....+. ....+..+.|+|.. ..|+.|-. +. .-|||=+++ +...+.+.... ....+..=-|.|+|..|.--
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEE
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEE
Confidence 76544443 56678889999944 44444432 11 125664432 33344443322 23445555799999876542
Q ss_pred e-----CCCcEEEEEcCCCcEEE
Q 023018 255 S-----KDGSVHMVNITTGKVCC 272 (288)
Q Consensus 255 ~-----~dg~i~iwd~~t~~~~~ 272 (288)
+ .+..|.-+++.|++...
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EEE
T ss_pred eecCCCCceEEEeeCCCCCCceE
Confidence 2 24468888999887654
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.64 E-value=0.033 Score=47.87 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=108.1
Q ss_pred EEEEEEcCCCCcEEE-EEeCCC----eEEEEEccCCeeeEee-ccccCcEEEEEEecCCCEEEEEeCC-----------C
Q 023018 67 VYSVACSPTDATLVA-TGGGDD----KGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLD-----------G 129 (288)
Q Consensus 67 v~~~~~~~~~~~~l~-~~~~dg----~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-----------g 129 (288)
+...+++| +++++| +-+..| .|+++|+.+++.+... .... ...+.|.++++.|+....+ .
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44678999 555554 434444 4999999999776543 2221 2239999998876655432 2
Q ss_pred eEEEEeCCCCcee--EEeccCCCC--EEEEEEcCCCCEEEEecC---C-CeEEEEECCcc-----cEEEEeeccCCCeEE
Q 023018 130 LVQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA-----AYLNMFSGHGSSVTC 196 (288)
Q Consensus 130 ~i~i~d~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~-----~~~~~~~~~~~~i~~ 196 (288)
.|+.|.+.+.... ..+...... ...+..++++++|+.... + ..+++.++..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776433 444443332 678889999998776433 2 45888888764 333333323333333
Q ss_pred EEEcCCCCEEEEEe---CCCeEEEEeCCCCce---eEEEcCCCcccc--CeEEEEEcCCCCEEE-EEeCCC--cEEEEEc
Q 023018 197 GDFTPDGKTICTGS---DDATLRVWNPKSGEN---IHVIRGHPYHTE--GLTCLTISADSTLAL-SGSKDG--SVHMVNI 265 (288)
Q Consensus 197 ~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~ 265 (288)
+... .+.+++... ..+.|...++..... ...+.. +.. .+..+... +.+|+ ....++ .|+++++
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE--CCEEEEEEEECCccEEEEEEC
Confidence 4333 333333332 245677778876652 223332 333 34444443 33444 444443 6899999
Q ss_pred CCCcEEE
Q 023018 266 TTGKVCC 272 (288)
Q Consensus 266 ~t~~~~~ 272 (288)
..+....
T Consensus 357 ~~~~~~~ 363 (414)
T PF02897_consen 357 DDGKESR 363 (414)
T ss_dssp T-TEEEE
T ss_pred CCCcEEe
Confidence 9334333
No 389
>PHA02790 Kelch-like protein; Provisional
Probab=97.60 E-value=0.012 Score=51.49 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCcEEEEEeCCC-----eEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeEE--
Q 023018 76 DATLVATGGGDD-----KGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCT-- 144 (288)
Q Consensus 76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~-- 144 (288)
++.++++|+.++ .+..||..+.+....- ....... +++ .-++...++|+.+ ..+..|+..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 556777777543 4667887776543322 2111111 222 2366667777753 3577888766543322
Q ss_pred eccCCCCEEEEEEcCCCCEEEEecCCC---eEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 145 LEGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
+.........+.. ++++.+.|+.++ .+..||.++.+-.. .+.........+.+ ++...+.| |.+.+||
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEec
Confidence 2211212222222 677888887653 46788877653221 11111111112222 34444444 4577899
Q ss_pred CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 023018 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~ 269 (288)
..+.+- ..+...+...... +++. -++++.+.||.+ ..+..||..+++
T Consensus 422 p~~~~W-~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTW-TLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcE-eEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 876543 2333221111222 2222 257777777754 357788887764
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0017 Score=59.82 Aligned_cols=145 Identities=15% Similarity=0.053 Sum_probs=95.7
Q ss_pred CcEEEEEEecCCCEEEEE--eCCCeEEEEeCCCCceeE-----Eec------cCCCCEEEEEEcCCCC-EEEEecCCCeE
Q 023018 108 DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSSGNLKC-----TLE------GPGGGVEWVSWHPRGH-IVLAGSEDSTV 173 (288)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~~------~~~~~i~~~~~~~~~~-~l~~~~~dg~i 173 (288)
-++..+...+++...++. +.+-.|..||+++-.... -+. .......++.|+|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356666667776644433 344478899987532111 111 1223456788988433 56677788999
Q ss_pred EEEECCcccE-EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cCeEEEEEcCCCCEE
Q 023018 174 WMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLA 251 (288)
Q Consensus 174 ~i~d~~~~~~-~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 251 (288)
++..+..... +..+ ......++++|+|.|..++.|-..|++.-|-. +++....+...+... ..|.+++|-....+|
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887654322 2222 24567899999999999999999999999975 456666666554333 789999998766666
Q ss_pred EEE
Q 023018 252 LSG 254 (288)
Q Consensus 252 ~~~ 254 (288)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.58 E-value=0.023 Score=44.70 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=113.5
Q ss_pred EEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeeeEeeccccCc-EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 67 VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (288)
...+.|.. ++.++-+.+.-| .|+.+++.+++......-...- --.++.. +++.....-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677755 566666666656 6899999998876654421110 1123333 33444555678999999999998888
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--C---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSDDATLRVW 218 (288)
Q Consensus 144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~l~~~~~dg~i~i~ 218 (288)
++.-. +.=..++. ++..|+.+.....++++|..+.+....+... . ..++-+.|. +|...|=.-....|...
T Consensus 125 ~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 87644 34566774 5677777777899999999888776666532 2 235566775 56666666677789999
Q ss_pred eCCCCceeEEEcCCC------------ccccCeEEEEEcCCCCE-EEEE
Q 023018 219 NPKSGENIHVIRGHP------------YHTEGLTCLTISADSTL-ALSG 254 (288)
Q Consensus 219 d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~-l~~~ 254 (288)
|..+|+....+.... ....-.+.+++.|.... +++|
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998877652110 11345789999986554 4555
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.54 E-value=0.0092 Score=53.18 Aligned_cols=189 Identities=18% Similarity=0.266 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCC------eEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCcee
Q 023018 76 DATLVATGGGDD------KGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK 142 (288)
Q Consensus 76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 142 (288)
.+.+++.|+..+ .+..||..++.......- ....-.+++.. ++...++|+.+ .++..||..+++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456777777763 578888887754443221 22223344443 55678888888 35778888877643
Q ss_pred EE--eccCCCCEEEEEEcCCCCEEEEecCCCe-----EEEEECCccc--EEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018 143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDST-----VWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (288)
Q Consensus 143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg 213 (288)
.. +............ +|.+.++|+.||. +-.||.++.+ .+..............+ +|...++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 32 1222222222222 6889999998864 7778876643 22222211111222222 566677777554
Q ss_pred ------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcEEE
Q 023018 214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVCC 272 (288)
Q Consensus 214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~~~ 272 (288)
.+..||..+..-. .+.......... .++. -++.+.+.||.++ .|..||..+.+-..
T Consensus 439 ~~~~l~sve~YDP~t~~W~-~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWT-LIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CccccceEEEEcCCCCcee-ecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 5788998876432 222111111111 1222 2577778888776 37788888765443
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.035 Score=43.80 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=97.4
Q ss_pred CcEEEEEEecCCC-EEEEEeCCCe-EEEEeCCCCceeEEeccCCCC--EEEEEEcCCCCEEEEecCC-----CeEEEEEC
Q 023018 108 DSVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLKCTLEGPGGG--VEWVSWHPRGHIVLAGSED-----STVWMWNA 178 (288)
Q Consensus 108 ~~i~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 178 (288)
.....++|+|... -++.+-.-|+ ..++|....+....+....+. .-.-.|||+|.+|++.-.| |.|-+||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 3445678888655 4555555554 568898887766665443322 2234789999998876443 78999999
Q ss_pred Ccc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC------------------CeEEEEeCCCCceeEEEcCC-CccccC
Q 023018 179 DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD------------------ATLRVWNPKSGENIHVIRGH-PYHTEG 238 (288)
Q Consensus 179 ~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~-~~~~~~ 238 (288)
+.+ +.+..+..|.-....+.|.+||+.|+.+... -++.+.|..+|+.+....-. ..+.-.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 865 5567788888888999999999999876531 12444454555544332211 124456
Q ss_pred eEEEEEcCCCCEEEEEe
Q 023018 239 LTCLTISADSTLALSGS 255 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~ 255 (288)
+..+...++|.+++.+-
T Consensus 228 iRHld~g~dgtvwfgcQ 244 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeeeCCCCcEEEEEE
Confidence 88888888888776553
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.04 Score=45.84 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=82.7
Q ss_pred EccCCeeeEeeccccCcEEEE-----EEecCCCEEEEEe-CC--CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018 93 RINQGDWASEIQGHKDSVSSL-----AFSMDGQLLASGG-LD--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (288)
Q Consensus 93 ~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 164 (288)
|..++..+..+.........+ +|.++|++|+.++ .+ ..+.+.|+.+++..+.-.+.........++|+.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 455666666665433322222 4667887655544 44 467777889887666554433323356778888887
Q ss_pred EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeC
Q 023018 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSD----------------------DATLRVWNP 220 (288)
Q Consensus 165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--p~~~~l~~~~~----------------------dg~i~i~d~ 220 (288)
+.......++-.|+++.+....+......+-...|. .++..++-.-. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 766566789999999987766666666655545554 35555433211 124666788
Q ss_pred CCCceeEEEcCCCccccCeEEEEEcCC-CCEEEEE
Q 023018 221 KSGENIHVIRGHPYHTEGLTCLTISAD-STLALSG 254 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 254 (288)
.+|+....+. ....+..+.|+|. ..+|.-|
T Consensus 176 ~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 176 KTGERKVVFE----DTDWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp TT--EEEEEE----ESS-EEEEEEETTEEEEEEEE
T ss_pred CCCceeEEEe----cCccccCcccCCCCCCEEEEe
Confidence 8887655555 4566788999994 4444444
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.44 E-value=0.032 Score=42.77 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC---CEEEEEeCCCeEEEEeCCC--CceeEEecc---
Q 023018 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG---QLLASGGLDGLVQIWDPSS--GNLKCTLEG--- 147 (288)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--- 147 (288)
.+.++.+--..|.|.-||+...+....-- ...+...+.+--.+ .+.+.++..-.|.-||... .+...++..
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 45566666666788889987754332211 11223333343222 1333333344455577432 222232110
Q ss_pred --CCCCEEEEEEcCCCCEEEEecC-C---------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE-EeCCCe
Q 023018 148 --PGGGVEWVSWHPRGHIVLAGSE-D---------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDAT 214 (288)
Q Consensus 148 --~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~-~~~dg~ 214 (288)
...+.+.-..+|+|+++ .|.. + |.++.|-. +..+..+...-.--..++|+.+.+.++. -+.+-.
T Consensus 105 d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hHHhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 13345666778999884 3332 1 33444432 1122222222233467889887776654 455667
Q ss_pred EEEEe--CCCCce-----eEEEcCCCccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEE
Q 023018 215 LRVWN--PKSGEN-----IHVIRGHPYHT-EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAY 282 (288)
Q Consensus 215 i~i~d--~~~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~ 282 (288)
|.-|| ..+|.. +..++..+... ...-.++...+|.+.++.-..|+|..+|..||+.+..+ ..+++++|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 76676 666542 22222211111 12234566778888888888999999999999999987 45667766
Q ss_pred e
Q 023018 283 D 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 3
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.41 E-value=0.00059 Score=38.33 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=31.2
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271 (288)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~ 271 (288)
....|..++|+|...+|+.++.+|.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 4567999999999999999999999999999 55543
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00058 Score=51.64 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=77.8
Q ss_pred EeCCCeEEEEEccCCeeeEee-ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeEEeccCCCCEEEE-EEcC
Q 023018 83 GGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWV-SWHP 159 (288)
Q Consensus 83 ~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~-~~~~ 159 (288)
-+.+|.|.-+++...+....- .-+... .....-+..+++|+.+|.|.+|...... ....+......|.++ .--.
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR 112 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence 355677776666543221111 112222 1122235579999999999999876221 111122222223222 2223
Q ss_pred CCCEEEEecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 023018 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTG--SDDATLRVWNPK 221 (288)
Q Consensus 160 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~--~~dg~i~i~d~~ 221 (288)
++.+..+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++++.+ +.+..++.|++.
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 55688899999999999998887776666666 444444444455556555 666666666664
No 398
>PRK13684 Ycf48-like protein; Provisional
Probab=97.40 E-value=0.057 Score=44.89 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=87.0
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEE-eCCCCceeE-EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE
Q 023018 107 KDSVSSLAFSMDGQLLASGGLDGLVQIW-DPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 184 (288)
...+.++.+.|++.+++++. .|.+..- + ..++.-. ........++.+.+.++++.++++. .|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 45788999999887666654 5655432 2 2222222 2223445789999999888777664 476654223333221
Q ss_pred EEeec----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 023018 185 NMFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (288)
Q Consensus 185 ~~~~~----~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 260 (288)
..... ....+..+.+.|++..++ ++.+|.+. .....++.................+.|..++..++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 11111 123578889998776555 45567654 34445555444432111234577788776666655 4567888
Q ss_pred EEEE
Q 023018 261 HMVN 264 (288)
Q Consensus 261 ~iwd 264 (288)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 7765
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.39 E-value=0.0087 Score=51.73 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeeeEeeccccCcEEEEEEecC----CCEEEEEeCCCeEEEEeCC
Q 023018 64 SDEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWDPS 137 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~ 137 (288)
-.+|..++|.- +.+.+.|.- ..|.+++=| ...+. .-..|..+.|.|- ...|++.-....|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35789999985 555555432 233333322 12222 3356889999984 3345555667899999874
Q ss_pred -----CCceeEEeccCC-----CCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCE
Q 023018 138 -----SGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKT 205 (288)
Q Consensus 138 -----~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~ 205 (288)
+++.+......- --...+.|||....|++-+....-.+++++.. +....+ ...+.|.|.+|.+||++
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 223322211110 01245789999888887776555556666543 333334 35678999999999999
Q ss_pred EEEEeCCC-eEEEEeCC
Q 023018 206 ICTGSDDA-TLRVWNPK 221 (288)
Q Consensus 206 l~~~~~dg-~i~i~d~~ 221 (288)
|+++-... .-+|||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 87765432 45788853
No 400
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.0068 Score=51.51 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=85.2
Q ss_pred EEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-------EEEEEeCCCeEEEEeCCCCc-eeEEec--c--C
Q 023018 81 ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGN-LKCTLE--G--P 148 (288)
Q Consensus 81 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~-~~~~~~--~--~ 148 (288)
..|+....++-.|+..|+.+....-|... -+.|.|..+ .-++|-.+..|.-.|.+... .+.... . .
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 34555566777788888888888766554 466777432 22344444445545654322 222111 1 1
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~ 221 (288)
.....+..-. .+.++|+|+..|.|++||--.......+.+....|..+..+.+|.++++.+. ..|.+-|++
T Consensus 562 Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1122222222 3458999999999999996544555556677788999999999999877764 466677764
No 401
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.032 Score=49.81 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=85.2
Q ss_pred eEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeEE--eccCCCCEEEEEE
Q 023018 88 KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKCT--LEGPGGGVEWVSW 157 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~ 157 (288)
.+..||..+.+.... +...... .+++. -++..+++|+.+ ..+..||..++..... +.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 467788877654332 2211111 12222 356667777743 3477888877653221 1111222222222
Q ss_pred cCCCCEEEEecCCC-----eEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCC-----------------
Q 023018 158 HPRGHIVLAGSEDS-----TVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDA----------------- 213 (288)
Q Consensus 158 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg----------------- 213 (288)
++++++.|+.++ .+..||..+.+- +..+.........+.+ ++...+.|+.++
T Consensus 351 --~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 --DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred --CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 677888888754 478899876532 2222211111122222 566667776542
Q ss_pred ------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCC
Q 023018 214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITT 267 (288)
Q Consensus 214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~t 267 (288)
.+..||+.+.+- ..+......... .+++ .-++.+.+.|+.+ ..+..||..+
T Consensus 427 ~~~~~~~ve~YDP~td~W-~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW-ETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccceEEEECCCCCeE-eecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 477888876542 222221101111 1122 2256676777654 2467899887
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.31 E-value=0.0012 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW 99 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 99 (288)
...|.+++|+| ...++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45699999999 7889999999999999998 4443
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.30 E-value=0.082 Score=44.61 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=101.4
Q ss_pred CCCeeEee-cCC-CCEEEEEEcC----------CCCc-EEEEEeCCCeEEEEEccC----CeeeEeecc---cc----Cc
Q 023018 54 DDSTHIFS-GHS-DEVYSVACSP----------TDAT-LVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DS 109 (288)
Q Consensus 54 ~~~~~~~~-~h~-~~v~~~~~~~----------~~~~-~l~~~~~dg~i~iw~~~~----~~~~~~~~~---~~----~~ 109 (288)
.+.++.+. .+. +.....-|+. ...+ +++-|-..++|+|.|+.+ .+..+++.. +. ..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 34555543 332 4666666651 1334 444555788999999974 344444432 11 11
Q ss_pred EEEEEEecCCCEEEEEeC------CCeEEEEeCCCCceeEEeccC---CCCEEEEEEcCCCCEEEEecC-----------
Q 023018 110 VSSLAFSMDGQLLASGGL------DGLVQIWDPSSGNLKCTLEGP---GGGVEWVSWHPRGHIVLAGSE----------- 169 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~----------- 169 (288)
-..+..-|+|+.++++-. -|-+.++|-.+.......... ...-..+.|.|..+.+++...
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 122334478888877632 256888888877777666542 234567888898888887543
Q ss_pred ---------CCeEEEEECCcccEEEEeeccCC--CeEEEEEcC--CCCE-EEEEeCCCeEEEEeC-CCCc----eeEEEc
Q 023018 170 ---------DSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTP--DGKT-ICTGSDDATLRVWNP-KSGE----NIHVIR 230 (288)
Q Consensus 170 ---------dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~p--~~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~ 230 (288)
..++.+||+.+.+.++++..... .+..+.|.. ...+ ++.+...++|..|-. ..+. .+-.+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 34799999999999999875432 344566654 4444 333334555554432 3332 122221
Q ss_pred CCC-----c---------cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 023018 231 GHP-----Y---------HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK 269 (288)
Q Consensus 231 ~~~-----~---------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~ 269 (288)
..+ . ...-|+.+.+|.|.++|..++. .|.|+.||+..-.
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 110 0 0234788999999999987765 8999999998643
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.30 E-value=0.018 Score=51.27 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=74.5
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCC------
Q 023018 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP--DGKTICTGSDDATLRVWNPK------ 221 (288)
Q Consensus 151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p--~~~~l~~~~~dg~i~i~d~~------ 221 (288)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. .....|..+.|.. +++.+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445455545555555555679999999886443322 3577899999964 88888888889999998531
Q ss_pred ---CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018 222 ---SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (288)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 265 (288)
+..+++.+........+|....|.++|.+++++ ++.+.|++-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 122334443222234678899999999776544 356888764
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.06 Score=42.78 Aligned_cols=198 Identities=12% Similarity=0.162 Sum_probs=117.9
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (288)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (288)
|-...|.++.|+|+.. .|++......-.||=...|+.+.+++-. -...-.+.+..++++.++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3344599999999554 5555555566667777778888886521 1223457787777777777788888888776553
Q ss_pred eeEEe----------ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-E--EEEeecc-------CCCeEEEEEc
Q 023018 141 LKCTL----------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-Y--LNMFSGH-------GSSVTCGDFT 200 (288)
Q Consensus 141 ~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~~-------~~~i~~~~~~ 200 (288)
....+ .....+.-.++|.|....|+.+-.-.-+.||.+.... . +.....+ -..+.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 1124568899999988888887766666666654322 1 1111111 2346777888
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC---c---cccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018 201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHP---Y---HTEGLTCLTISADSTLALSGSKDGSVHM 262 (288)
Q Consensus 201 p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i 262 (288)
+ .+..|+.+..++.+.-.|.. |..+..+.-.. + .....-.++..++|.+.++ |+-+-.+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv-SEPnlfy~ 308 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV-SEPNLFYR 308 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE-ecCCccee
Confidence 7 45566777778888888875 44444332211 1 1122345666666654433 34444443
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.29 E-value=0.025 Score=49.06 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=88.2
Q ss_pred cCcEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCC----CCEEEEecCCCeEEEEECC
Q 023018 107 KDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD 179 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~ 179 (288)
-.++..++|. ||+.++-.. .+|.+++=| .+.+..| ..|..++|.|- ...+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899996 666544332 344444322 2233333 34889999984 3345555556899999875
Q ss_pred c-----ccEEEEeecc---CCC--eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCC
Q 023018 180 R-----AAYLNMFSGH---GSS--VTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISAD 247 (288)
Q Consensus 180 ~-----~~~~~~~~~~---~~~--i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~ 247 (288)
- ++.+.....+ .-+ ...+.|+|....|++-.....-.+++++.... ...+. ..+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----CCceEEEEEecCc
Confidence 2 2322221111 111 24567999888887766555444666653322 22233 5678999999999
Q ss_pred CCEEEEE-eCCCcEEEEEcCC
Q 023018 248 STLALSG-SKDGSVHMVNITT 267 (288)
Q Consensus 248 ~~~l~~~-~~dg~i~iwd~~t 267 (288)
|+.|+++ ++.=.-++||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 9887765 3334578888543
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.26 E-value=0.09 Score=48.52 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=97.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeccCCC--------CEEEEEEcC----------------CCCEEEEecCCCeEE
Q 023018 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--------GVEWVSWHP----------------RGHIVLAGSEDSTVW 174 (288)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~ 174 (288)
+..++.++.++.|.-.|..+|+.+.++..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777778889999999999998887654221 122233321 234788899999999
Q ss_pred EEECCcccEEEEeeccCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceeEEE
Q 023018 175 MWNADRAAYLNMFSGHGSSV-------------TCGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI 229 (288)
Q Consensus 175 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~p--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 229 (288)
-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 1111 1112223 2456666643 688999999999988776
Q ss_pred cCCCcc--------------ccCe-EEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCcEEEEecc
Q 023018 230 RGHPYH--------------TEGL-TCLTISADSTLALSGS------------------KDGSVHMVNITTGKVCCLNFQ 276 (288)
Q Consensus 230 ~~~~~~--------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~t~~~~~~~~~ 276 (288)
...... ...+ ..+++++...+++.+. ..+.|.-.|+.||+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421000 0011 2344555444443321 235688889999998877643
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.13 E-value=0.076 Score=40.78 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=87.3
Q ss_pred cCcEEEEEEecCCCEEEEEeC---------CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE-ecCCCeEEEE
Q 023018 107 KDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW 176 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~ 176 (288)
+...++-..+|+|++++-.-. .|.++.|-.. ++ +..+...-+--+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 445667778999998433222 2445555322 11 2222223334567899887665544 4556778777
Q ss_pred E--CCccc-----EEEEeec---cC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc
Q 023018 177 N--ADRAA-----YLNMFSG---HG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS 245 (288)
Q Consensus 177 d--~~~~~-----~~~~~~~---~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (288)
| ..+|. .+..++. .. ...-.++...+|.+.+++-..|+|...|+.+|+.+..+.- ....+++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 7 55543 2222221 11 1123455566788888888899999999999999998886 46789999996
Q ss_pred C-CCCEEEEE
Q 023018 246 A-DSTLALSG 254 (288)
Q Consensus 246 ~-~~~~l~~~ 254 (288)
- +-..|++.
T Consensus 263 Gkn~d~~yvT 272 (310)
T KOG4499|consen 263 GKNLDILYVT 272 (310)
T ss_pred CCCccEEEEE
Confidence 4 33444443
No 409
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.12 E-value=0.099 Score=41.90 Aligned_cols=205 Identities=14% Similarity=0.205 Sum_probs=119.3
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-------CCeeeEeecc-----ccCcEEEEEEecCCC------------E
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L 121 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-------~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~ 121 (288)
.-+.|+++| .+.+-++....+...+|+.. ....+..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 56677777777999999986 1223333331 123557777764222 3
Q ss_pred EEEEeCCCeEEEEeCCCCce-----eEEecc-CCC-CEEEEEEcC--CCCEEEEe-cCCCeEEEEECCcccEEEE---ee
Q 023018 122 LASGGLDGLVQIWDPSSGNL-----KCTLEG-PGG-GVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNM---FS 188 (288)
Q Consensus 122 l~~~~~dg~i~i~d~~~~~~-----~~~~~~-~~~-~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~---~~ 188 (288)
++.++.+|+|.-|...-... ...+.. ..+ .-..+++.. .+.+|+.+ -..++|.+||-.-.+ +.. +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCcc
Confidence 67788999999998543322 122221 112 234455553 34555554 457889999853222 111 11
Q ss_pred ccC-----CC-----------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC------
Q 023018 189 GHG-----SS-----------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------ 246 (288)
Q Consensus 189 ~~~-----~~-----------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 246 (288)
... .+ |+-..-.+++..=+.|..-|.|-+||+. |+.++++.... .-...+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-RLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-cccCCceeeeChhhhCCC
Confidence 100 00 1111111122222233445789999985 77888775322 344567777765
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 247 DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+.+|+---.||+|..||..+|+.+-.+
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeee
Confidence 4677777777999999999999877666
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=97.02 E-value=0.14 Score=42.66 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=84.5
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFW-RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (288)
...+.++.+.| ++.+++++. .|.+..- +-...........-...++++.+.++++.++++ ..|.+.+-....+..-
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34688888888 666665554 4655432 211112222223345678999999998876665 4676654333444332
Q ss_pred EEeccC----CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 143 CTLEGP----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 143 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
.....+ ...+..+.+.+++..++++ .+|.+.. ....++.-... .......+.+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 222211 2347889999877765555 4565553 33333322222 12223577777776655555 4557888
Q ss_pred EEEeC
Q 023018 216 RVWNP 220 (288)
Q Consensus 216 ~i~d~ 220 (288)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 77753
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.01 E-value=0.12 Score=43.54 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=77.9
Q ss_pred EEEEEEecCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeE
Q 023018 110 VSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 173 (288)
...|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ +++ +... .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence 45788999988666642 223 677775432 22 223443334456889999888 444 4443 45
Q ss_pred EEE-ECCcc-----c---EEEEeec----cCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCC
Q 023018 174 WMW-NADRA-----A---YLNMFSG----HGSSVTCGDFTPDGKTICTGSDD-------------------ATLRVWNPK 221 (288)
Q Consensus 174 ~i~-d~~~~-----~---~~~~~~~----~~~~i~~~~~~p~~~~l~~~~~d-------------------g~i~i~d~~ 221 (288)
..| +.... + .+..+.. +......+.|.|+|.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 444 44221 1 1122222 12346789999999876654411 445666665
Q ss_pred CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (288)
++. +..+.. .......++|+|+|.++++-.
T Consensus 173 g~~-~e~~a~---G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH---GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec---CcCCCccceECCCCCEEEEcc
Confidence 443 333332 234457899999998877644
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.99 E-value=0.18 Score=42.71 Aligned_cols=183 Identities=12% Similarity=0.118 Sum_probs=87.1
Q ss_pred EcCCCCcEEEEE--e----CCCeEEEEEccCCeeeEeeccc---cCcEEEEEEecCCCEEEEEeC---------------
Q 023018 72 CSPTDATLVATG--G----GDDKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGL--------------- 127 (288)
Q Consensus 72 ~~~~~~~~l~~~--~----~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------- 127 (288)
.-| ++.+++++ . .-|-+.+.|-++.......... ..--+++.|.|..+.++|+..
T Consensus 137 clp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 137 CLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp E-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred ecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 344 56566654 2 2345778887776666655432 223467788898888888643
Q ss_pred -----CCeEEEEeCCCCceeEEeccCCC--CEEEEEEcC--CCCE-EEEecCCCeEEEEEC-Cccc----EEEEeec---
Q 023018 128 -----DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHP--RGHI-VLAGSEDSTVWMWNA-DRAA----YLNMFSG--- 189 (288)
Q Consensus 128 -----dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~~--- 189 (288)
..++++||+.+.+.++++.-... ....+.|.. ...+ ++.+.-.++|..|-- ..+. .+..+..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 35799999999999998875532 355666654 3333 333334455655533 3321 1111211
Q ss_pred --------------cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEE---c-CCC------------ccccC
Q 023018 190 --------------HGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVI---R-GHP------------YHTEG 238 (288)
Q Consensus 190 --------------~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~-~~~------------~~~~~ 238 (288)
-..-|+.|.+|.|.++|+.++ ..|.|+.||+..-...+.. . +.. ...+.
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 124478999999999987665 6899999999754332221 1 100 01223
Q ss_pred eEEEEEcCCCCEEEEEe
Q 023018 239 LTCLTISADSTLALSGS 255 (288)
Q Consensus 239 v~~~~~~~~~~~l~~~~ 255 (288)
..-+..|.||+.|+..+
T Consensus 376 PqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTSSEEEEE-
T ss_pred CCeEEEccCCeEEEEEe
Confidence 46678899998887654
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.90 E-value=0.25 Score=45.70 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=107.0
Q ss_pred EEEEEccCCeeeEeeccc----cCcEEEEEEecC-CCEEEEEeC----------CCeEEEEeCCCCceeEEecc--CCCC
Q 023018 89 GFFWRINQGDWASEIQGH----KDSVSSLAFSMD-GQLLASGGL----------DGLVQIWDPSSGNLKCTLEG--PGGG 151 (288)
Q Consensus 89 i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~--~~~~ 151 (288)
++++|-.+.+.+...... ...|.++.|..+ +.++++|.. .|.|.+|.....+.+..... -.+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 566666665544433211 123445557766 667887753 47888888776433333221 2233
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeEEE
Q 023018 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP--KSGENIHVI 229 (288)
Q Consensus 152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~--~~~~~~~~~ 229 (288)
+.++..- +|+++|. -+..|++|+..+.+.++.-..+..++..+...-.|+.+++|..-+.+.+.-. ..|+....-
T Consensus 832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4444332 4555544 4478999999888777777778889999999889999999998777665443 333333222
Q ss_pred cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
...+....+++.+-.+. .++.+..+|.+++....+
T Consensus 909 --rD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 909 --RDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred --hhhCccceeeEEEecCc-eEEeecccccEEEEEecC
Confidence 22356667777766544 445566778888776553
No 414
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.88 E-value=0.22 Score=42.07 Aligned_cols=193 Identities=19% Similarity=0.164 Sum_probs=110.2
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEeeccc--cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC-CEEEE
Q 023018 79 LVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWV 155 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~ 155 (288)
.++++..+|.|.-.|..++..+.....- ...+..-.+..+|+ |++++.+|.++.+|..++..+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4555677888888888887755433211 12222222333565 77888899999999989988888776651 11111
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC---CeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEc
Q 023018 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIR 230 (288)
Q Consensus 156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 230 (288)
..- ....++.++.++.+...+..+++.+..+..... .+..--. .....++.+.. ++.+.-+|+.+|.......
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 111 223455555779999999988887766543221 1111000 12344555555 6678888888887766532
Q ss_pred CCCccc-cCe---EEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 231 GHPYHT-EGL---TCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 231 ~~~~~~-~~v---~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
...... ..+ ..+...+ -+.-++.++.+|.+...+..+|+.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 111000 001 0111101 1122356677888999999999888766
No 415
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.78 E-value=0.3 Score=42.01 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=106.5
Q ss_pred EEEcCCCCcEEEEEeCC----------CeEEEEEccCCeee--EeeccccCc--EEEEEEecCCCEEEEEeC---C-CeE
Q 023018 70 VACSPTDATLVATGGGD----------DKGFFWRINQGDWA--SEIQGHKDS--VSSLAFSMDGQLLASGGL---D-GLV 131 (288)
Q Consensus 70 ~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i 131 (288)
+.|.+++..++++.... ..|+.|.+.+.... ..+...... ...+..++++++|+..+. + ..+
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 89999555556655332 23788888765432 334433332 567888999998775432 2 457
Q ss_pred EEEeCCCC----ceeEEeccCCCCE-EEEEEcCCCCEEEEec---CCCeEEEEECCcccE---EEEeeccCCCeEEEEEc
Q 023018 132 QIWDPSSG----NLKCTLEGPGGGV-EWVSWHPRGHIVLAGS---EDSTVWMWNADRAAY---LNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 132 ~i~d~~~~----~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~ 200 (288)
.+.++..+ .....+......+ ..+... .+.+++... ..+.|...++..... ...+..+...+.-..+.
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 88888764 2233333333334 334443 444444433 246777788876542 22444454433333334
Q ss_pred CCCCEEEEEe-CCC--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCcEEEE
Q 023018 201 PDGKTICTGS-DDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSK---DGSVHMVNITTGKVCCL 273 (288)
Q Consensus 201 p~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~---dg~i~iwd~~t~~~~~~ 273 (288)
..+++|+... .++ .|+++++..+.....+... ..+.|..+...+++..+ +..++ -++++.||+.+++....
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcEEeeecCC--cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 4455655543 344 5889999844455555443 23345566555555433 33322 46899999999987543
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.74 E-value=0.24 Score=40.38 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-e
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL-K 142 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~ 142 (288)
..++.|.. ...+++|. .| +.+...+.++.=..+. .-......+....++..+++ +..|.|+.= ...++. .
T Consensus 64 l~~I~f~~--~~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDG--NEGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEET--TEEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEE
T ss_pred EEEEEecC--CceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCee
Confidence 56777764 34455544 35 3333333333222221 11223334444444433333 445654432 233332 2
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-C
Q 023018 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-K 221 (288)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~ 221 (288)
.......+.+..+..+++|++++++.......-|+.-...-...-+.....|..|.|.|++...+++ ..|.|++=+. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3334455778999999999999999886666788765432222222346789999999997765544 8888888772 2
Q ss_pred CCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 222 SGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
....... +.........+..++|.+++...++|+ .|.+ +.....|+--...
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~ 268 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKD 268 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceEC
Confidence 2222111 111111344588999999877777665 4443 3455566544433
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.72 E-value=0.5 Score=43.88 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=97.4
Q ss_pred EEEEEEcCCCCcEEEEEeC----------CCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018 67 VYSVACSPTDATLVATGGG----------DDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (288)
|.++.|..+.+.++++|+. .|.|.++.+.....+..... -.+.+.++..- +|+++|.- ...|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEE
Confidence 4455577644667777743 57888888877443333322 23455554432 56666554 5689999
Q ss_pred eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEee-ccCCCeEEEEEcCCCCEEEEEeC
Q 023018 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS-GHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
+..+.+.++.-..+..++..+...-.+..+++|..-+.+.+...+..+ ..-.-+ .+....+++.+-.+ ..++-+..
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae~ 932 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAEN 932 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeecc
Confidence 999887777766788889999999999999999988877766554432 332222 35566777776644 44555566
Q ss_pred CCeEEEEeC
Q 023018 212 DATLRVWNP 220 (288)
Q Consensus 212 dg~i~i~d~ 220 (288)
+|.+.+...
T Consensus 933 ~gNlf~v~~ 941 (1096)
T KOG1897|consen 933 SGNLFTVRK 941 (1096)
T ss_pred cccEEEEEe
Confidence 777766543
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.66 E-value=0.24 Score=39.41 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=87.0
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe-CCCCcee-E
Q 023018 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLK-C 143 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-~ 143 (288)
.+...++++++..+.++...++.-.+|-...+....... ....+....|++++...+....+...+++. ...+... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999544444444223333334333333223322 233778889999987777666666666663 3333222 1
Q ss_pred EeccC--CCCEEEEEEcCCCCEEEEec---CCCeEEEEECC---cc------cEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018 144 TLEGP--GGGVEWVSWHPRGHIVLAGS---EDSTVWMWNAD---RA------AYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (288)
Q Consensus 144 ~~~~~--~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 209 (288)
.+... .+.|..+.++|+|..++... .++.|.+--+. .+ .++.........++.+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 22222 12799999999999887766 34777776543 22 1122222335678999999998877666
Q ss_pred eCCC
Q 023018 210 SDDA 213 (288)
Q Consensus 210 ~~dg 213 (288)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5444
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.64 E-value=0.22 Score=42.07 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCEEEEEEcCCCCcEEEEEe-----------CCC-eEEEEEccC--Ce--eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018 65 DEVYSVACSPTDATLVATGG-----------GDD-KGFFWRINQ--GD--WASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (288)
.....|+|.+ .++++++-. ..+ .|.+++-.+ ++ ....+...-...+.+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 3457789998 666665542 223 677776432 22 223333223345788998888 4444444
Q ss_pred CeEEEEeCCCC-----cee---EEecc----CCCCEEEEEEcCCCCEEEEecCC-------------------CeEEEEE
Q 023018 129 GLVQIWDPSSG-----NLK---CTLEG----PGGGVEWVSWHPRGHIVLAGSED-------------------STVWMWN 177 (288)
Q Consensus 129 g~i~i~d~~~~-----~~~---~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d 177 (288)
...++.+.... +.. ..+.. +......++|.|+|.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 44444454321 211 11222 13347789999999876655421 4456666
Q ss_pred CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (288)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 210 (288)
...++. ..+...-.....++|+|+|+++++-.
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 554432 23322223456899999998877644
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.62 E-value=0.14 Score=45.66 Aligned_cols=144 Identities=14% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCcEEEEEeCC-----CeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeE
Q 023018 76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC 143 (288)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~ 143 (288)
++.+++.||.+ ..+..||..+.+....-.- +...-.+++ .-+++.++.|+.. ..+..||+.+++...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 44566667654 3467778776654332111 111111222 2256666666632 457889988765433
Q ss_pred Ee--ccCCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccEE--EEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 144 TL--EGPGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 144 ~~--~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
.- +........+. .++.+++.|+.+ ..+.+||..+.+-. ..+.........+.+ ++..++.|+.
T Consensus 421 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 421 GSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred cCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 21 11111122222 256677777643 23888998765422 211111111122222 5566666664
Q ss_pred C-----CeEEEEeCCCCc
Q 023018 212 D-----ATLRVWNPKSGE 224 (288)
Q Consensus 212 d-----g~i~i~d~~~~~ 224 (288)
+ ..+.+||+.+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 3 467888887553
No 421
>PLN02193 nitrile-specifier protein
Probab=96.60 E-value=0.44 Score=41.75 Aligned_cols=149 Identities=10% Similarity=0.089 Sum_probs=73.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEEecc---CCCC-EEEEEEcCCCCEEEEecCCC-----eEEEEECCcccE
Q 023018 118 DGQLLASGGLD-----GLVQIWDPSSGNLKCTLEG---PGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAY 183 (288)
Q Consensus 118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~---~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 183 (288)
++.+++.|+.+ ..+..||+.+.+....... +... -.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 3578889887654332111 1111 112222 2566777777543 467788766542
Q ss_pred EEEee-----ccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEEcCC--CccccCeEEEEEcCCCCEEE
Q 023018 184 LNMFS-----GHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 184 ~~~~~-----~~~~~i~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~ 252 (288)
...-. ..........+ +++.++.++.+ ..+.+||+.+.+- ..+... ........+++ .-++++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~-~~~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASA-AVGKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEE-EECCEEEE
Confidence 21110 00111111222 46666776655 4588999987643 223211 00111112222 22566777
Q ss_pred EEeCC--------------CcEEEEEcCCCcEE
Q 023018 253 SGSKD--------------GSVHMVNITTGKVC 271 (288)
Q Consensus 253 ~~~~d--------------g~i~iwd~~t~~~~ 271 (288)
.|+.. ..+.+||+.+.+-.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 77743 24889998876543
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.60 E-value=0.16 Score=46.47 Aligned_cols=72 Identities=25% Similarity=0.446 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEeCCC---------Cce--eE-Ee--------ccCCCCEEEEEEcCC---CCEE
Q 023018 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS---------GNL--KC-TL--------EGPGGGVEWVSWHPR---GHIV 164 (288)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~~l 164 (288)
-.|..+.++|+|++++..+..|.+.+.=.+. ++. .. .+ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688899999999999888776544432211 111 11 11 123346777888874 4677
Q ss_pred EEecCCCeEEEEECC
Q 023018 165 LAGSEDSTVWMWNAD 179 (288)
Q Consensus 165 ~~~~~dg~i~i~d~~ 179 (288)
++-+.|+++++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 777778888888874
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.56 E-value=0.4 Score=40.80 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=83.0
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----EE
Q 023018 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YL 184 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~ 184 (288)
...+..++++.+++++.....++-||-....-...-......+..+.+.+++..++++. .|.+..- ...++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S-~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVS-KGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEe-cCCCCcccccce
Confidence 34455667777776665433333344221111112223345689999999988877664 4555442 22332 12
Q ss_pred EEeec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018 185 NMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (288)
Q Consensus 185 ~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 262 (288)
..... ....+..+.|.+++..+++ +..|.+.... ..|+..............++.+.|.++++.+++| .+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 22221 2235888999887665554 5577666553 4555544443222234568899988776666554 6777765
Q ss_pred E
Q 023018 263 V 263 (288)
Q Consensus 263 w 263 (288)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 424
>PLN02153 epithiospecifier protein
Probab=96.55 E-value=0.37 Score=40.22 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=88.8
Q ss_pred CCcEEEEEeCC-------CeEEEEEccCCeeeEeecc---ccC---cEEEEEEecCCCEEEEEeCC-----CeEEEEeCC
Q 023018 76 DATLVATGGGD-------DKGFFWRINQGDWASEIQG---HKD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPS 137 (288)
Q Consensus 76 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 137 (288)
++.+++.|+.+ ..+.+||+.+.+....-.. ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 44566667653 2577888877654432110 010 1122222 45566676643 357788987
Q ss_pred CCceeEE--ecc---CCCCEEEEEEcCCCCEEEEecCC-----------CeEEEEECCcccEEE--Eee---ccCCCeEE
Q 023018 138 SGNLKCT--LEG---PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAAYLN--MFS---GHGSSVTC 196 (288)
Q Consensus 138 ~~~~~~~--~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~--~~~---~~~~~i~~ 196 (288)
+.+-... +.. +.......+..-++++++.|+.+ ..+.+||+.+.+-.. ... ...... +
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-G 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-e
Confidence 7643321 110 11111112222356677777753 247788887653221 110 001111 1
Q ss_pred EEEcCCCCEEEEEeCC-------------CeEEEEeCCCCceeEEEcCC-C-ccccCeEEEEEcCCCCEEEEEeCC----
Q 023018 197 GDFTPDGKTICTGSDD-------------ATLRVWNPKSGENIHVIRGH-P-YHTEGLTCLTISADSTLALSGSKD---- 257 (288)
Q Consensus 197 ~~~~p~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~d---- 257 (288)
++. -++++++.++.+ ..+.+||+.+.+-. .+... . .......+++ ..++.+++.|+..
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT-EVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDL 265 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE-eccccCCCCCCcceeeeE-EECCEEEEECcccCCcc
Confidence 221 245555555432 35888998765432 22210 0 0111112222 2246677777741
Q ss_pred ----------CcEEEEEcCCCc
Q 023018 258 ----------GSVHMVNITTGK 269 (288)
Q Consensus 258 ----------g~i~iwd~~t~~ 269 (288)
..++.||+.+.+
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccccEEEEEcCccE
Confidence 267888887764
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.51 E-value=0.36 Score=43.80 Aligned_cols=112 Identities=13% Similarity=0.212 Sum_probs=72.7
Q ss_pred EEEEEEcC--CCCEEEEecCCCeEEEEECCc-------c-------------cEEEEeeccCCCeEEEEEc--CCCCEEE
Q 023018 152 VEWVSWHP--RGHIVLAGSEDSTVWMWNADR-------A-------------AYLNMFSGHGSSVTCGDFT--PDGKTIC 207 (288)
Q Consensus 152 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--p~~~~l~ 207 (288)
|+.|.... ....|+++..||.|.+|.++. . ++...+. ....++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554443 445899999999999997632 0 0112222 34578899998 7778888
Q ss_pred EEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 023018 208 TGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS---T---LALSGSKDGSVHMVNI 265 (288)
Q Consensus 208 ~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 265 (288)
+++....|.||-..... .......+ .+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888877544321 11111111 156678899987732 2 6777888999999888
No 426
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.49 E-value=0.25 Score=37.63 Aligned_cols=106 Identities=14% Similarity=0.281 Sum_probs=65.5
Q ss_pred CEEEEecCCCeEEEEECCc--ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE---eCC--CCceeE-
Q 023018 162 HIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---A---TLRVW---NPK--SGENIH- 227 (288)
Q Consensus 162 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~- 227 (288)
..|+.+...+.|.+|++.+ .+++.+|..- +.|..+.++..|++|++--.+ . .+|+| ... ..+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4554546668899999983 3556666644 789999999999999986432 2 56665 221 111211
Q ss_pred EEcCCC------------------ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcE
Q 023018 228 VIRGHP------------------YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 228 ~~~~~~------------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~ 270 (288)
.+.++. +...++.+++..| .|++|+ |+ ++.+.+|.+..+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEE
Confidence 111210 0234677888888 566654 43 56899998876544
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.47 E-value=0.27 Score=44.02 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCc------
Q 023018 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADR------ 180 (288)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~------ 180 (288)
..-+.-+.-++..++-+....+.|||...+.....-. ...+.|..+.|.. +++.+++.+..+.|.+|--..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444444445444444455689999998886444322 3467899999964 788888888889999985421
Q ss_pred ---ccEEEEe--eccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 181 ---AAYLNMF--SGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 181 ---~~~~~~~--~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
..+++.+ ..++ .+|....|.++|..++.+ +..+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1233333 2333 578999999988665544 457888874
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.00033 Score=58.73 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEEe
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTL 145 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~ 145 (288)
-....|-|.+.. ++.++.+..|..||-. ++...... ..+....++|..++..++ .+-..+.+.+|++.+......-
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 344667785666 5666777788888854 44443443 345566789988887554 4456789999999765322211
Q ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
.+....-.-+.|++....++.+...|.+.+++.++.+.+...-.|...+++++|.+.+..+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1222223337899988999999999999999998877666555588899999999865433
No 429
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.46 E-value=0.34 Score=42.46 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=80.2
Q ss_pred EEEEE---eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC---e
Q 023018 121 LLASG---GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---V 194 (288)
Q Consensus 121 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i 194 (288)
+++.. ...+...++|. .|..+..+.........+...++|.+++... ..++.+|+- |+.+..+...... -
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 24556667774 3555554443322222266678888776655 889999984 6666655533322 3
Q ss_pred EEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCceeEEEcCCCc----cc--------------------c
Q 023018 195 TCGDFTPDGKTICTGSD-------------DATLRVWNPKSGENIHVIRGHPY----HT--------------------E 237 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~----~~--------------------~ 237 (288)
..+...|+|++|+.+.. .-.|..+| .+|+.+..+..... .. .
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 56778899999888772 12366667 67776655421110 00 2
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018 238 GLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNF 275 (288)
Q Consensus 238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~ 275 (288)
.++++.+.+ ++.+|+++-.-..|...|.+++++...+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 478999999 66666666666689999999999988873
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.46 E-value=0.00037 Score=62.47 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=96.6
Q ss_pred EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEee-----ccccCcEEEEEEec---CCCEEEEEeCC
Q 023018 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEI-----QGHKDSVSSLAFSM---DGQLLASGGLD 128 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~-----~~~~~~i~~~~~~~---~~~~l~~~~~d 128 (288)
.++|..+.|-.+.|-..+-..++ ..-|.+.||++.- |+....+ ..-...+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45566777777777653322222 3337789999863 3322222 22234445666765 45577777788
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEE-----------EEcCCCCEEEEecCCCeEEEEECC-----cccEEEEeeccCC
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWV-----------SWHPRGHIVLAGSEDSTVWMWNAD-----RAAYLNMFSGHGS 192 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~ 192 (288)
+.|++..+.+... ..++.|...+..+ ..+|+|..++.++.||.+++|.+. ...++..++.|.+
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 9999877655432 2333454333332 368999999999999988888653 3345666666663
Q ss_pred -CeEEEEEcCCC---------CEEEEEeC-CCeEEEEeCCCCcee
Q 023018 193 -SVTCGDFTPDG---------KTICTGSD-DATLRVWNPKSGENI 226 (288)
Q Consensus 193 -~i~~~~~~p~~---------~~l~~~~~-dg~i~i~d~~~~~~~ 226 (288)
+-.|.-++.+. .++++++. ...+++|.....+++
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 33333333221 23444443 456888887666554
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.035 Score=51.72 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=87.3
Q ss_pred CCEEEEEEcCCCCcE--EEEEeCCCeEEEEEccCCeee-----Eeecc------ccCcEEEEEEecCCC-EEEEEeCCCe
Q 023018 65 DEVYSVACSPTDATL--VATGGGDDKGFFWRINQGDWA-----SEIQG------HKDSVSSLAFSMDGQ-LLASGGLDGL 130 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~--l~~~~~dg~i~iw~~~~~~~~-----~~~~~------~~~~i~~~~~~~~~~-~l~~~~~dg~ 130 (288)
-+|..+...+ +... +...+.+-.|..||+.+.... .-+.. ...-..++.|+|.-. ..+++..|+.
T Consensus 101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3566666666 4333 233343447889998753211 11111 122345788888543 4567778999
Q ss_pred EEEEeCCCCcee-EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCCE
Q 023018 131 VQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKT 205 (288)
Q Consensus 131 i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~~ 205 (288)
|++.-+...... ..+. .....++++|+|.|+.+++|-..|++.-|-.. .+....+.. ....|.+++|.....+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 998876543322 2222 34468999999999999999999999988653 332333321 2467899999876666
Q ss_pred EEE
Q 023018 206 ICT 208 (288)
Q Consensus 206 l~~ 208 (288)
|++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 654
No 432
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.36 E-value=0.38 Score=40.72 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=89.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeccCC--CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEE
Q 023018 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPG--GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCG 197 (288)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~ 197 (288)
.++++..+|.|.-.|..+++.+....... ..+..-.+..+| .+++++.+|.++.+|.++++.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45666788989999998888654333221 122222222255 488888889999999999998888775551 11111
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEe
Q 023018 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~~~ 274 (288)
..- ....++.++.++.+.-.+..+|...............+..-....++ .++.+.. ++.+.-.+..+|+.....
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence 111 22344445578999999999898876654321000001100012233 4444444 667888888888877764
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.36 Score=36.57 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=101.0
Q ss_pred CCcEEEEEeC--CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeEEeccCCCCE
Q 023018 76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152 (288)
Q Consensus 76 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 152 (288)
++.++.+.+. ...|++|++.+++.+..-.-....+..=-...-+.++ +-.-.+|.-.++|.++.+.+..+.-. +.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence 4455555543 3469999999888766543221111111111123333 33456889999999988887776532 334
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCe---EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSV---TCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (288)
Q Consensus 153 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i---~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~ 227 (288)
+.++. ++..|+.+....+++.-|.++.....++.. ...+| .-+.|- +|...+-.-.+..|...+..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 455577777777888888776544433321 22233 334443 55556655566667777777777655
Q ss_pred EEcCC---------CccccCeEEEEEcCCC-CEEEEE
Q 023018 228 VIRGH---------PYHTEGLTCLTISADS-TLALSG 254 (288)
Q Consensus 228 ~~~~~---------~~~~~~v~~~~~~~~~-~~l~~~ 254 (288)
.+... ..+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44321 1134456788999976 555555
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.20 E-value=1 Score=41.52 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----------Cee--eE-ee--------ccccCcEEEEEEecC---CC
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDW--AS-EI--------QGHKDSVSSLAFSMD---GQ 120 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~ 120 (288)
-.|..+.++| .+.++|..|..|. .|-.+.. ++. .. ++ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4689999999 7778888777664 4444321 111 11 11 123457899999996 46
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 023018 121 LLASGGLDGLVQIWDPSSG 139 (288)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~ 139 (288)
.|++-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888899999999999754
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=96.17 E-value=0.27 Score=43.17 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=67.6
Q ss_pred CCcEEEEEeCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeEEe--ccC
Q 023018 76 DATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTL--EGP 148 (288)
Q Consensus 76 ~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~--~~~ 148 (288)
++.+.+.|+.+ ..+..|+..+.+....-.-...........-+++..+.|+.++ .+..||..+.+....- ..+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 45666677653 3577788766554332111111111111223677777777543 4678888766543321 111
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 023018 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPK 221 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-----g~i~i~d~~ 221 (288)
......+.+ ++++++.| |.+.+||.++.+- +..+.........+.+ +++..++|+.+ ..+..||..
T Consensus 398 r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 398 HYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence 111222222 56666666 4577888876532 2222211112222222 45666666643 245666665
Q ss_pred CC
Q 023018 222 SG 223 (288)
Q Consensus 222 ~~ 223 (288)
+.
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 43
No 436
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.07 E-value=0.54 Score=37.23 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=124.6
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (288)
..-..++-.| ++..-+++...|.|--.|..+++....--+....-..+..-|++...++-+.. .|.-.|.++.... +
T Consensus 62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~ 138 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-R 138 (353)
T ss_pred CCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-E
Confidence 3456677777 77777888888888888888887665554555555778888988866654433 4444555554322 2
Q ss_pred e----ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018 145 L----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (288)
Q Consensus 145 ~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d 219 (288)
| ...........|.+.|++-+++.. |.---.|..+ ..+.++.. .....+.|+..|+|..-++.-.+..|-..|
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 2 223456788899999998888763 2222222211 12333332 233567788999999988887888888888
Q ss_pred CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~ 268 (288)
..++. ...+..........+.+--+|.|..-++-...+.++.||-.+.
T Consensus 217 p~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 217 PFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred cccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 88773 3344433322334455555667777777666677777776553
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.00079 Score=56.54 Aligned_cols=141 Identities=16% Similarity=0.311 Sum_probs=94.2
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccEEEEeec
Q 023018 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSG 189 (288)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~ 189 (288)
....|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+++||+.+......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 346678877778888889999999844 44443333 334566788888777544 455678999999976432111111
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC
Q 023018 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (288)
Q Consensus 190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (288)
....-.-+.|++....++.+...|.+.||+..+....-.... |...+++++|.+.+..+ .++.|
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vi-l~dcd 179 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVI-LCDCD 179 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceee-ecCcH
Confidence 111112267999888999999999999999876655444333 67888999999876544 33334
No 438
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.6 Score=37.37 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=97.0
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc---
Q 023018 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--- 181 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 181 (288)
..-+..+.++ +++...+..+.-++|.|+.+...-..... ..+...++.. .|++..++..+.-..++|+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3445566665 45677777777799999987654333221 2233344444 5888888887777778887654
Q ss_pred cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (288)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (288)
.+..++......-..++.| |++-+.+..|+-+.+.|+.+......+... .....+.++..+++--+++... --+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy~--egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEcc--cceE
Confidence 3344444444444666665 788888889999999999765443333221 1333678888887655555443 3466
Q ss_pred EEEcCCCcE
Q 023018 262 MVNITTGKV 270 (288)
Q Consensus 262 iwd~~t~~~ 270 (288)
+-|..+-+.
T Consensus 237 ivd~s~~ss 245 (370)
T COG5276 237 IVDVSGPSS 245 (370)
T ss_pred EEecCCCCC
Confidence 667766553
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.03 E-value=0.71 Score=41.96 Aligned_cols=152 Identities=9% Similarity=0.077 Sum_probs=92.7
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE------ee----------------ccccCcEEEEEEec--C
Q 023018 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------EI----------------QGHKDSVSSLAFSM--D 118 (288)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~----------------~~~~~~i~~~~~~~--~ 118 (288)
-.+..+++. ...+++++. .+.|+||++....... .+ ......|+.|.... .
T Consensus 39 fKNNLtals----q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 39 FKNNLTALS----QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG 113 (717)
T ss_pred cccceeEEe----cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence 334455554 144555655 4899999986532211 11 00123355555443 3
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------C-------------ceeEEeccCCCCEEEEEEc--CCCCEEEEecCCCeEEEE
Q 023018 119 GQLLASGGLDGLVQIWDPSS-------G-------------NLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMW 176 (288)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~ 176 (288)
...|+.|..||.|.+|.+.+ . ++...+. -...+++++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 44788999999999996521 0 0112222 23468999999 788899999888888887
Q ss_pred ECCcc--cE-EEEeeccCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q 023018 177 NADRA--AY-LNMFSGHGSSVTCGDFTPDG---K---TICTGSDDATLRVWNP 220 (288)
Q Consensus 177 d~~~~--~~-~~~~~~~~~~i~~~~~~p~~---~---~l~~~~~dg~i~i~d~ 220 (288)
-.... +. ...-..+...|-+|+|.++. . .|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55331 11 11111255568889998743 2 6788889999988887
No 440
>PRK10115 protease 2; Provisional
Probab=96.02 E-value=1.2 Score=40.98 Aligned_cols=198 Identities=15% Similarity=0.083 Sum_probs=101.2
Q ss_pred CEEEEEEcCCCCcEEEEE-eCC----CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC------CeEEEE
Q 023018 66 EVYSVACSPTDATLVATG-GGD----DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIW 134 (288)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~ 134 (288)
.+..+.|+| ++++|+.+ ..+ ..|++.++.++..+........ ..++|.++++.|+.+..+ ..|+.+
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 477788999 55555543 333 3588889887764322211111 458999999866655432 368888
Q ss_pred eCCCC--ceeEEeccCCCCEE-EEEEcCCCCEEEEecC---CCeEEEEECC--cccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018 135 DPSSG--NLKCTLEGPGGGVE-WVSWHPRGHIVLAGSE---DSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (288)
Q Consensus 135 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~p~~~~l 206 (288)
++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +. +..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEE
Confidence 88887 33444544333343 2333437776655443 3578888842 3332222222222222222 22 3444
Q ss_pred EEEeCC----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE--EEcCCCcE
Q 023018 207 CTGSDD----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTGKV 270 (288)
Q Consensus 207 ~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~t~~~ 270 (288)
+..+.. ..|...++........+.... ....+..+.+.. ..++++...+|.-++ +++.+++.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREV 350 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCce
Confidence 433322 234444554212223333221 123577777773 355556666765444 45444433
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.95 E-value=0.4 Score=40.89 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=67.5
Q ss_pred CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe----cC-------
Q 023018 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MD------- 118 (288)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~------- 118 (288)
...+-.....|......+.+++.+| .+.+.|+...=|.|.++|+.++..++..++-.+.- +.|. +.
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~ 369 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNS 369 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccc
Confidence 4445566777888888899999999 68888888888999999999988777666543321 1111 00
Q ss_pred ---------CCE-EEEEeCCCeEEEEeCCCCceeEEeccC
Q 023018 119 ---------GQL-LASGGLDGLVQIWDPSSGNLKCTLEGP 148 (288)
Q Consensus 119 ---------~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~ 148 (288)
..+ ++-+-.-|.|-||.++++..+..+...
T Consensus 370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 112 334457899999999988877766543
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.89 E-value=0.061 Score=29.32 Aligned_cols=31 Identities=16% Similarity=0.467 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q 023018 192 SSVTCGDFTPDG---KTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 192 ~~i~~~~~~p~~---~~l~~~~~dg~i~i~d~~~ 222 (288)
+.+++++|+|.. ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888899999999995
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.68 Score=41.77 Aligned_cols=179 Identities=13% Similarity=0.184 Sum_probs=94.0
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE---eccCCCCEEEEEEcCCCCE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSWHPRGHI 163 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 163 (288)
-.|+|+++. |+.+..+......+-.+.|+.+. .|++...+|++++|++-....... +......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457888865 55555554444577889998765 466668899999999754322210 12233345555555455
Q ss_pred EEEecCCCeEEEE-ECCcccEEEEeec---cCCCeEEEEEcCCCC--E-EEEEe-CCCeEEEEeCCCCc-eeEEEcCCCc
Q 023018 164 VLAGSEDSTVWMW-NADRAAYLNMFSG---HGSSVTCGDFTPDGK--T-ICTGS-DDATLRVWNPKSGE-NIHVIRGHPY 234 (288)
Q Consensus 164 l~~~~~dg~i~i~-d~~~~~~~~~~~~---~~~~i~~~~~~p~~~--~-l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~~ 234 (288)
+++-..+|++.+- +.... .+.++.. ...+-.|-...+++. . ++-.. ..+ ..++-...+. ....+..
T Consensus 140 Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~--- 214 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW--- 214 (829)
T ss_pred eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC---
Confidence 3333334555443 33221 2222221 111112222222211 1 11111 011 1112111111 1111111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
....+..+..||+.++|+.-...|.|.+-+....++++.+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 2356888999999999999999999999999888777765
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.42 Score=45.68 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.2
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018 245 SADSTLALSGSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 245 ~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+++..++++..||.+.+||+..++.....
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~ 272 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKLQIAR 272 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCceeecC
Confidence 778999999999999999999999874443
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.5 Score=35.81 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=90.7
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCe
Q 023018 118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194 (288)
Q Consensus 118 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 194 (288)
++.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+. +.+..-.+|....+|..+-+.+..+.. .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4555666553 35799999999987765443211111111111122 333344678889999988887777653 3333
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~ 272 (288)
+.++ .++..|+.++....++.-|.++.....++.... ..-..++-+.|- +|.+.+-.=....|...+..+|+++.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4544 356678888778888888887654443332210 012223444444 56666655556678888888888887
Q ss_pred Ee
Q 023018 273 LN 274 (288)
Q Consensus 273 ~~ 274 (288)
.+
T Consensus 211 wi 212 (262)
T COG3823 211 WI 212 (262)
T ss_pred EE
Confidence 65
No 446
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.60 E-value=0.097 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCC--cEEEEEeCCCeEEEEEccC
Q 023018 65 DEVYSVACSPTDA--TLVATGGGDDKGFFWRINQ 96 (288)
Q Consensus 65 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~ 96 (288)
++|.++.|+|... .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998555 6888888889999999985
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.48 E-value=0.16 Score=39.46 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=50.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEE------cCC-----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVI------RGH-----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
+...+.+|++.+.+|.+++||+.+++.+..- -.. ......|..+.++.+|.-|++-+ +|..+.|+..=
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3446889999999999999999987654321 000 02456788899998888777664 57889998765
Q ss_pred Cc
Q 023018 268 GK 269 (288)
Q Consensus 268 ~~ 269 (288)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 448
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.47 E-value=0.77 Score=36.12 Aligned_cols=141 Identities=13% Similarity=0.261 Sum_probs=81.1
Q ss_pred EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCc----ccEE---EEeeccCCCeEEEEEc
Q 023018 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADR----AAYL---NMFSGHGSSVTCGDFT 200 (288)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~----~~~~---~~~~~~~~~i~~~~~~ 200 (288)
-.+||+.+++....-.....-+.+-.+.++|+++.+|+.. ..+++++... .... ..+. ....--.....
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4578988876544322233345555678899999998752 3578887644 0111 1111 22233345566
Q ss_pred CCCCEEEEEeCCCe-EEEEeCCC-CceeEEE---cCC--CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 201 PDGKTICTGSDDAT-LRVWNPKS-GENIHVI---RGH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 201 p~~~~l~~~~~dg~-i~i~d~~~-~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
|+|+.|+.|+...- ..+|..+. ......+ ... .....--..+...|+|++++.+..+ -.|||..+++.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 79999999887653 44555422 1111111 110 0011223356678999999888765 46679999888776
Q ss_pred e
Q 023018 274 N 274 (288)
Q Consensus 274 ~ 274 (288)
+
T Consensus 205 l 205 (243)
T PF07250_consen 205 L 205 (243)
T ss_pred C
Confidence 6
No 449
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.36 E-value=1.5 Score=37.35 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=79.1
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEE-EEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-----
Q 023018 67 VYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----- 140 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 140 (288)
...+..++ ++.+++.+.. |.+. -|+--.......-......++.+.|.+++..++++ ..|.+.. ....++
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 44455566 5666665554 4433 23322111122222335678899999998877665 5565543 334443
Q ss_pred eeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018 141 LKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL 215 (288)
Q Consensus 141 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i 215 (288)
....... ....+..+.|.+++..+++| ..|.+.... ..++.=... ..-...++.+.|.++++.+++ +.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence 2222222 22358889999877666665 447666653 333322221 223456889998876655555 457777
Q ss_pred EEE
Q 023018 216 RVW 218 (288)
Q Consensus 216 ~i~ 218 (288)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.32 E-value=1.4 Score=36.60 Aligned_cols=146 Identities=17% Similarity=0.283 Sum_probs=84.9
Q ss_pred cCcEEEEEEecCCCEEEEEeCCCe------EEEEeCCC--C--cee-----EEeccCCC--------CEEEEEEcCCCCE
Q 023018 107 KDSVSSLAFSMDGQLLASGGLDGL------VQIWDPSS--G--NLK-----CTLEGPGG--------GVEWVSWHPRGHI 163 (288)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~i~~~~~~~~~~~ 163 (288)
-+.+..+.+.+++..+++.+.+|. +..+.+.. + ..+ ..+....+ -.-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778888865555666666666 55555443 1 111 11122222 2346788778877
Q ss_pred EEEecCC------CeEEEEECCcccEEEEee---------------ccCCCeEEEEEcCCCCEEEEEeCCC---------
Q 023018 164 VLAGSED------STVWMWNADRAAYLNMFS---------------GHGSSVTCGDFTPDGKTICTGSDDA--------- 213 (288)
Q Consensus 164 l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~p~~~~l~~~~~dg--------- 213 (288)
+++.=.+ ..|+.++.. ++.+..+. ..+...-+|+++|+|+.|+++....
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777667 788888875 55443331 1345678999999999777664322
Q ss_pred -------eEEEEeCCC-CceeE--EEcCCC----ccccCeEEEEEcCCCCEEEE
Q 023018 214 -------TLRVWNPKS-GENIH--VIRGHP----YHTEGLTCLTISADSTLALS 253 (288)
Q Consensus 214 -------~i~i~d~~~-~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~l~~ 253 (288)
.|..||..+ +.... .+.... .....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455554 32222 222111 03467888999999887764
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=1.6 Score=37.98 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=42.3
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEeCC---------CCceeEEe-----------ccCCCCEEEEEEcCCC---CEEE
Q 023018 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS---------SGNLKCTL-----------EGPGGGVEWVSWHPRG---HIVL 165 (288)
Q Consensus 109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~-----------~~~~~~i~~~~~~~~~---~~l~ 165 (288)
.|..+..++.|..++-++.+|.+.++=.+ .|+..... ....-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46677788899988888888876655321 22211110 0111234556677743 4566
Q ss_pred EecCCCeEEEEECCccc
Q 023018 166 AGSEDSTVWMWNADRAA 182 (288)
Q Consensus 166 ~~~~dg~i~i~d~~~~~ 182 (288)
.-+.|..|++|++...+
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 66666777777765443
No 452
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.22 E-value=2 Score=37.80 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC---EEEEEEcCCC
Q 023018 85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRG 161 (288)
Q Consensus 85 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~ 161 (288)
..+...+.|.. |.....+.........+...++|.+++... ..+..+|+. |+.+..+...... -..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 34455555643 344433332222211166778888776554 788888875 5555554433321 3457778899
Q ss_pred CEEEEecC-------------CCeEEEEECCcccEEEEeec--c-------------------------CCCeEEEEEcC
Q 023018 162 HIVLAGSE-------------DSTVWMWNADRAAYLNMFSG--H-------------------------GSSVTCGDFTP 201 (288)
Q Consensus 162 ~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~~~~~p 201 (288)
++|+.+.. .-.|..+| .+|+.+..+.. | -..+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98887771 12355555 56655544321 0 02478899999
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEEcCC
Q 023018 202 DGKTICTGSD-DATLRVWNPKSGENIHVIRGH 232 (288)
Q Consensus 202 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~ 232 (288)
....|+.++. -..|...|.++++....+..+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 4455555554 458889998888887777543
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.12 E-value=0.74 Score=32.27 Aligned_cols=112 Identities=9% Similarity=0.189 Sum_probs=68.7
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCcc--------cEEEEeeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEeC
Q 023018 154 WVSWHPRGHIVLAGSEDSTVWMWNADRA--------AYLNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 154 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~p-----~~~~l~~~~~dg~i~i~d~ 220 (288)
.-.|......|++++..|.|.|++.... ..+..+. ....|++|+-.| ....|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3456666678899999999999987533 2333333 456677775544 345677776 456889999
Q ss_pred CCCceeEEEcCCCccccCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018 221 KSGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSVHMVNITTGKVCC 272 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~t~~~~~ 272 (288)
.....+..-. -...++++.+-. ...++++ +.+..|.-||....+...
T Consensus 81 ~~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 ENNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccCchhhhhh----CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEE
Confidence 8665443222 345677776643 2344444 446667777765544443
No 454
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=2 Score=41.42 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe--------cCCCEEEEEeCCCeEEEEeCC--
Q 023018 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS--------MDGQLLASGGLDGLVQIWDPS-- 137 (288)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~-- 137 (288)
+.+-+-|.=++.-+ +-|..+.+|++.++.....+.+-...|..+..- |.=+++++.+.--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 33444452233333 456899999999977777777766677666543 222344444444456655332
Q ss_pred --CCce-----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEE--ECCcc---c-E----------------EEEee
Q 023018 138 --SGNL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW--NADRA---A-Y----------------LNMFS 188 (288)
Q Consensus 138 --~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~----------------~~~~~ 188 (288)
++.. ...+......|.++....+|+.+++|-. |.|+-+ ....+ + + +..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 1111 1222334556888997778877777655 544322 22111 1 0 11222
Q ss_pred -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
.+..+|..+........+++-+..|.|.+||+..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567999999998888999999999999999975
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.04 E-value=0.78 Score=32.15 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=71.0
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCc--------eeEEeccCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEEC
Q 023018 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNA 178 (288)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~ 178 (288)
.-.|......|++++..|+|.|++..... .+..+. -...|++++-.+ ....|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666678888889999999876432 233333 334577775544 2346777665 78999999
Q ss_pred CcccEEEEeeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018 179 DRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGENIHVI 229 (288)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 229 (288)
....-+..- .-...+.++.+-. ...-|+..+.+..|.-||....+...++
T Consensus 81 ~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 877544322 2335677776643 1223454555778888887655555444
No 456
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.02 E-value=2 Score=36.81 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeeccccCcEEEEEEec----CCCEEEEEeCCCeEEEEeC-
Q 023018 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAFSM----DGQLLASGGLDGLVQIWDP- 136 (288)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~- 136 (288)
|-.+.-++.+...+++|+..|.++||+..... .+...+ -..+|..+..-+ .....++.-.-..+.||.+
T Consensus 27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Q ss_pred --------CCCceeEEeccCCCCEEEEEE-------cCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018 137 --------SSGNLKCTLEGPGGGVEWVSW-------HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (288)
Q Consensus 137 --------~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p 201 (288)
.+.-.+..+..|.-.-.+..+ .....+|.+-+.||.+.+|+-+.......+.. ---...+.|.|
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~ 184 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP 184 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee
Q ss_pred CCCEEEEEeCCCeEEEEe
Q 023018 202 DGKTICTGSDDATLRVWN 219 (288)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d 219 (288)
.-+.|++++.+..|.-|.
T Consensus 185 ~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 185 RTDSFVTASSSWTLECYK 202 (418)
T ss_pred cCCEEEEecCceeEEEec
No 457
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=1.4 Score=37.67 Aligned_cols=120 Identities=9% Similarity=0.150 Sum_probs=76.1
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE----EEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL----NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 148 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
..++|.++.|+++.+.+|+--.+..|.+++....+.. .+.+.....|....|+.. .-++..+..| +-+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 5568999999999999999999999999987433222 223334456889999876 4455555444 555543321
Q ss_pred -ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEE
Q 023018 224 -ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCC 272 (288)
Q Consensus 224 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~ 272 (288)
..++.... +...|....|.++-+.++.++. .+.+.=+-++++...+
T Consensus 143 krslRlVks---~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~k 191 (657)
T KOG2377|consen 143 KRSLRLVKS---HNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMSK 191 (657)
T ss_pred hhhhhhhhh---cccCccEEEEccccceEeeeccccccccccEEEeeceeee
Confidence 22333333 6778888999997765544432 3444445555544333
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.84 E-value=1.9 Score=35.65 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCcee---EEecc---CCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECCcc
Q 023018 118 DGQLLASGGLD-----GLVQIWDPSSGNLK---CTLEG---PGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRA 181 (288)
Q Consensus 118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~---~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 181 (288)
++.+++.|+.+ ..+..||+.+.+.. ..+.. ..... +++.. ++++++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45566677654 35667777665531 22211 11111 22222 4667777764 246888898765
Q ss_pred cE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCc
Q 023018 182 AY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGE 224 (288)
Q Consensus 182 ~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~ 224 (288)
+- +..+... ......+...++++.+.|+.++ .+.+||+.+.+
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 32 2222111 1111122223566667777654 35688887654
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2.9 Score=37.99 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=83.4
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--e--ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--I--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (288)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (288)
..++-.+.|+. +. -|++-..+|++++|++.... +.. . ......|..+.+..+| +++-..+|.+.+-+-...
T Consensus 83 ~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 83 HGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEE 157 (829)
T ss_pred CCCeeeecccC-Cc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCc
Confidence 34788899996 44 44566889999999986422 222 1 2233345555555555 333344565655432222
Q ss_pred ceeEEecc-CCCCEEEEEEc--CCC---CEEEEec-CCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018 140 NLKCTLEG-PGGGVEWVSWH--PRG---HIVLAGS-EDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (288)
Q Consensus 140 ~~~~~~~~-~~~~i~~~~~~--~~~---~~l~~~~-~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 211 (288)
..+..++. +.......+|. +++ ..++-.. ..+ .+..-+.... ....+....+.+..+..||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCCCceEEEEEEcCCcceEEEEec
Confidence 22333332 22222222332 111 1111111 001 1111111111 12223323466888999999999999999
Q ss_pred CCeEEEEeCCCCceeEEEc
Q 023018 212 DATLRVWNPKSGENIHVIR 230 (288)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~ 230 (288)
.|.|.+-+....+....+.
T Consensus 237 ~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCcEEEEecchhhhhhccC
Confidence 9999998877666555544
No 460
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=94.79 E-value=1.6 Score=34.51 Aligned_cols=70 Identities=10% Similarity=0.192 Sum_probs=44.1
Q ss_pred CCCeEEEEEcC----C---CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCe---EEEEEcCCCCEEEEEeCCCcE
Q 023018 191 GSSVTCGDFTP----D---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL---TCLTISADSTLALSGSKDGSV 260 (288)
Q Consensus 191 ~~~i~~~~~~p----~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~dg~i 260 (288)
...|+||+--. + -..|+.|+.+|.|+|.|......+..+... .-++ ..-.|..-.-.|++++.||.|
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp---svPv~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP---SVPVFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC---CCceEEEEEeeeeccceEEEEEeCCCEE
Confidence 34577776543 1 246999999999999999877776666542 2222 112233112356777899988
Q ss_pred EEE
Q 023018 261 HMV 263 (288)
Q Consensus 261 ~iw 263 (288)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 864
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.75 E-value=0.36 Score=37.45 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=49.6
Q ss_pred EcCCCCEEEEecCCCeEEEEECCcccEEEEe-------e-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 222 (288)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3446888999999999999999987654322 1 2456788888998888777655 57889998764
Q ss_pred C
Q 023018 223 G 223 (288)
Q Consensus 223 ~ 223 (288)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.71 E-value=3.9 Score=38.68 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred CCeEEEEeCC-CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCeEEEEEcCCCC
Q 023018 128 DGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGK 204 (288)
Q Consensus 128 dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~ 204 (288)
+|.++.|++- .++.+..+....-+-.-.+..|...++++|-. ..+++|++...++++.... ....|+.+.+. +.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence 4667777653 33333323221112222455665556665544 7899999988776655432 24556776664 67
Q ss_pred EEEEEeCCCeEE--EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018 205 TICTGSDDATLR--VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (288)
Q Consensus 205 ~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 266 (288)
++++|...-.+. .|+.. .+.+..+...+ ....|+++.+- |...++.+..=|.+.+..+.
T Consensus 988 RI~VgD~qeSV~~~~y~~~-~n~l~~fadD~-~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRRE-DNQLIVFADDP-VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEeeccceEEEEEEecC-CCeEEEEeCCC-ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 788887655554 45543 44455555433 34456666554 44456777777888777664
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.69 E-value=0.41 Score=42.86 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC----CceeEEEcCC-------------------CccccCeEEEEEcC----CCCEEEE
Q 023018 201 PDGKTICTGSDDATLRVWNPKS----GENIHVIRGH-------------------PYHTEGLTCLTISA----DSTLALS 253 (288)
Q Consensus 201 p~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~-------------------~~~~~~v~~~~~~~----~~~~l~~ 253 (288)
++...++.+..||.+....... +......... .........+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777888888887776553 2222111100 00123455566666 6789999
Q ss_pred EeCCCcEEEEEcCCCcEEEEe
Q 023018 254 GSKDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 254 ~~~dg~i~iwd~~t~~~~~~~ 274 (288)
.+.|+.+|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997764
No 464
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.69 E-value=1.9 Score=35.01 Aligned_cols=168 Identities=14% Similarity=0.193 Sum_probs=96.0
Q ss_pred eEEEEEccCCeeeEeecc------ccCcEEEEEEecCC-----CEEEEE-eCCCeEEEEeCCCCceeEEeccC-------
Q 023018 88 KGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-----QLLASG-GLDGLVQIWDPSSGNLKCTLEGP------- 148 (288)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~------- 148 (288)
+|.+||+.+.+.++++.- ..+.+..+.+.... .++..+ +..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 799999999998887653 24467788887632 233333 34568999999998765544321
Q ss_pred ------------CCCEEEEEEcC---CCCEEEEecCCC-eEEEEEC---Cccc---------EEEEeeccCCCeEEEEEc
Q 023018 149 ------------GGGVEWVSWHP---RGHIVLAGSEDS-TVWMWNA---DRAA---------YLNMFSGHGSSVTCGDFT 200 (288)
Q Consensus 149 ------------~~~i~~~~~~~---~~~~l~~~~~dg-~i~i~d~---~~~~---------~~~~~~~~~~~i~~~~~~ 200 (288)
...+..++.+| +++.|+.+...+ .++-..+ ++.. .+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12366677765 556666655433 2332221 1111 112221112356678889
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCccccCeEEEEEcC--CCCEEEEEe
Q 023018 201 PDGKTICTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISA--DSTLALSGS 255 (288)
Q Consensus 201 p~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~ 255 (288)
++|..+++--..+.|..|+..+. +....+...+..-..+..+.+.+ +|.+.+...
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 98888888888999999998752 12233332221245678899988 776655543
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.67 E-value=0.11 Score=47.52 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred EeecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEE-----------EecCCCEEEEE
Q 023018 59 IFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA-----------FSMDGQLLASG 125 (288)
Q Consensus 59 ~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~ 125 (288)
....-...+.-+.|.|. +..++..+-.++.+++..+.+... ..+.+|...+..++ ++|||..|+.+
T Consensus 175 ~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 175 PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 33334445566666662 456777777788888887765332 33444655544443 58899999999
Q ss_pred eCCCeEEEEeCC-----CCceeEEeccCCC-CEEEEEEcCCC---------CEEEEecC-CCeEEEEECCcccEE
Q 023018 126 GLDGLVQIWDPS-----SGNLKCTLEGPGG-GVEWVSWHPRG---------HIVLAGSE-DSTVWMWNADRAAYL 184 (288)
Q Consensus 126 ~~dg~i~i~d~~-----~~~~~~~~~~~~~-~i~~~~~~~~~---------~~l~~~~~-dg~i~i~d~~~~~~~ 184 (288)
+.||.++.|.+. ..++++..+.|.+ +-.|.-++.+. .++++++. +..+++|.....+++
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998888653 2244555565653 22222233221 23445444 456899987766665
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.71 Score=39.29 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=75.5
Q ss_pred CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe----eccccCcEEEEEEecCCCEEEEEeCCC
Q 023018 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----IQGHKDSVSSLAFSMDGQLLASGGLDG 129 (288)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (288)
..++..-....++|.++.|++ +.+.+|+-..+.+|.+.+....+.... .+.....|....|+.+ .-+|..+..|
T Consensus 56 DVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 56 DVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred CCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 344444445567999999999 888999999999999999854332222 2223456888999866 4455555555
Q ss_pred eEEEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018 130 LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (288)
Q Consensus 130 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 168 (288)
+-+|-... .+.++..+.+...|....|.++.+.++.++
T Consensus 134 -~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 134 -IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred -eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 55555433 234455566777899999999877555444
No 467
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.17 E-value=2.5 Score=34.16 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=70.9
Q ss_pred CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe------CCCeEEEEeCCCCceeEEecc-----CCCCEEEE
Q 023018 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG-----PGGGVEWV 155 (288)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~ 155 (288)
..|++||..+.+....-.+-.+.|+++.|..+.++++.|. ....+..||+.+.... .+.. -.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 4599999998887776666778999999986666666663 3457888998776532 2222 23678888
Q ss_pred EEcC-CC-CEEEEec-C--CCeEEEEECCcccEEEE-eeccCCCeEEEEEcC
Q 023018 156 SWHP-RG-HIVLAGS-E--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTP 201 (288)
Q Consensus 156 ~~~~-~~-~~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p 201 (288)
.+.. ++ ++.++|. . +..|..||-.+...+.. .......|..+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 7744 33 3444443 2 34577787655544443 222234455554433
No 468
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.17 E-value=5 Score=37.60 Aligned_cols=71 Identities=7% Similarity=0.005 Sum_probs=50.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE----cCC-----------C-ccccCeEEEEEcCCCCEEEEE
Q 023018 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGH-----------P-YHTEGLTCLTISADSTLALSG 254 (288)
Q Consensus 191 ~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~-----------~-~~~~~v~~~~~~~~~~~l~~~ 254 (288)
...|.++....-+.+++....||+|.++|..+.+.+... ... . ....++..++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 355777777777788999999999999998876544333 000 0 011234468899999999988
Q ss_pred eCCCcEE
Q 023018 255 SKDGSVH 261 (288)
Q Consensus 255 ~~dg~i~ 261 (288)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8898865
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=1.3 Score=38.46 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CCcee---EEEcCC-----CccccCeEEEEEcCCC---CEEE
Q 023018 193 SVTCGDFTPDGKTICTGSDDATLRVWNPK---------SGENI---HVIRGH-----PYHTEGLTCLTISADS---TLAL 252 (288)
Q Consensus 193 ~i~~~~~~p~~~~l~~~~~dg~i~i~d~~---------~~~~~---~~~~~~-----~~~~~~v~~~~~~~~~---~~l~ 252 (288)
.|..+..++.|..++..+.+|.+.++=.+ .|+.. +++... ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999989976554321 22221 111100 0012235678999965 5677
Q ss_pred EEeCCCcEEEEEcCCCcEEEE
Q 023018 253 SGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 253 ~~~~dg~i~iwd~~t~~~~~~ 273 (288)
.-+.|..|++|++...+.+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 778899999999987665543
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.05 E-value=2.3 Score=35.45 Aligned_cols=104 Identities=12% Similarity=0.215 Sum_probs=56.0
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---EEEe----eccCCCeEEEEEcCC---CCEEEEEeCC--------
Q 023018 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---LNMF----SGHGSSVTCGDFTPD---GKTICTGSDD-------- 212 (288)
Q Consensus 151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~i~~~~~~p~---~~~l~~~~~d-------- 212 (288)
..+.|+|.|+++++++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3678999999877665 4589999999 34332 2222 123457899999994 3444443331
Q ss_pred -CeEEEEeCCCC--c------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018 213 -ATLRVWNPKSG--E------NIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (288)
Q Consensus 213 -g~i~i~d~~~~--~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 256 (288)
..|.-|....+ . .+..+.........-..|.|.|+|.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13433433322 1 11122221112344567999999977776554
No 471
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.96 E-value=3.8 Score=35.43 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=25.0
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 237 EGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 237 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
..|..++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488999999889999999999999999974
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.90 E-value=0.63 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEeCCC
Q 023018 192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 192 ~~i~~~~~~p~~------~~l~~~~~dg~i~i~d~~~ 222 (288)
..+..++|||.| ..|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4688899999999998653
No 473
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.75 E-value=3.4 Score=34.20 Aligned_cols=106 Identities=12% Similarity=0.188 Sum_probs=53.0
Q ss_pred CCcEEEEEeCC-----CeEEEEEccCCeee---EeeccccCcE--EEEEEecCCCEEEEEeC-----CCeEEEEeCCCCc
Q 023018 76 DATLVATGGGD-----DKGFFWRINQGDWA---SEIQGHKDSV--SSLAFSMDGQLLASGGL-----DGLVQIWDPSSGN 140 (288)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~ 140 (288)
+..+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 44566677654 34667777665531 2222111111 12222 24566666653 2468888988765
Q ss_pred eeEEeccC-CCCEEEEEEcCCCCEEEEecCCC----eEEEEECCccc
Q 023018 141 LKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAA 182 (288)
Q Consensus 141 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 182 (288)
....-..+ .......+...++++++.|+.++ .+.+||+++.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 43321111 11112222233577888887654 35688887654
No 474
>PLN02153 epithiospecifier protein
Probab=93.69 E-value=3.6 Score=34.34 Aligned_cols=104 Identities=14% Similarity=0.277 Sum_probs=52.1
Q ss_pred CCcEEEEEeCC-----CeEEEEEccCCeeeEe--ecc---ccCc-EEEEEEecCCCEEEEEeCC-----------CeEEE
Q 023018 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI 133 (288)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~---~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i 133 (288)
++.+++.|+.+ ..+.+||+.+.+.... +.. .... -.+++. -+++.++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666777653 2477888877654432 110 0111 122222 345666666643 24778
Q ss_pred EeCCCCceeEEec-----cCCCCEEEEEEcCCCCEEEEecCC-------------CeEEEEECCccc
Q 023018 134 WDPSSGNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAA 182 (288)
Q Consensus 134 ~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~ 182 (288)
||+.+.+-...-. ..........+ ++++++.++.+ ..+.+||+.+.+
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 8887765332111 11111222222 55666655432 458889987654
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.63 E-value=0.41 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018 246 ADSTLALSGS-KDGSVHMVNITTGKVCCLN 274 (288)
Q Consensus 246 ~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~ 274 (288)
|+++.|+++. .++.|.++|..+++.+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 5677666654 5789999999999888876
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=3.3 Score=33.38 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=90.5
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--
Q 023018 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-- 140 (288)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 140 (288)
+-+..+.++. .++..+..+.-++|.|+.+...-..+.. ..+-.. .|.-.|++..++..+.-+.+.|+.+..
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 4455666654 4666667777799999987543322221 122333 344568888888855556677876653
Q ss_pred -eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018 141 -LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (288)
Q Consensus 141 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~ 216 (288)
+..++.........++.+ |++-..+..|+-+.+.|+.... .+.... ....+.++..+++..+++.. +--+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceE
Confidence 333444444444566664 7788888899999999997653 233332 33367887777665555443 33466
Q ss_pred EEeCCCCc
Q 023018 217 VWNPKSGE 224 (288)
Q Consensus 217 i~d~~~~~ 224 (288)
+-|..+.+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 66665444
No 477
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.53 E-value=4.2 Score=34.55 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCC-----------eEEEEEccCCeeeEeeccccCcE--EEEEEecCCCEEEEEeCC
Q 023018 76 DATLVATGGGDD-----------KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD 128 (288)
Q Consensus 76 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d 128 (288)
++.+.+.|+... .+..||..+.+....-....... .+....-++++.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 456666666532 47778877765444321111111 111221366677777653
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.47 E-value=0.63 Score=24.97 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCCceeEEEcC
Q 023018 201 PDGKTICTGS-DDATLRVWNPKSGENIHVIRG 231 (288)
Q Consensus 201 p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 231 (288)
|++++|+++. .++.|.++|..++..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677777655 578999999988887777764
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.43 E-value=2.7 Score=32.16 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=61.2
Q ss_pred EEEEEeCCCeEEEEEcc--CCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---C---eEEEE---eCC--CCceeE-E
Q 023018 79 LVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---G---LVQIW---DPS--SGNLKC-T 144 (288)
Q Consensus 79 ~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~-~ 144 (288)
.|+.+...+.|.+|++. ..+...++. .-+.|..+.++..|+||++--.+ . .+++| +.. ..+.+. +
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 33333555889999988 355666676 45789999999999999997432 2 55665 221 111111 1
Q ss_pred ecc---------------------CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc
Q 023018 145 LEG---------------------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (288)
Q Consensus 145 ~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 181 (288)
+-+ ...++.+++-.|...-|++|+. +.+.+|.++..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 111 1235667777774444555554 67888877544
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.33 E-value=2.8 Score=38.42 Aligned_cols=94 Identities=14% Similarity=0.275 Sum_probs=51.6
Q ss_pred CCCEEEEEEcCCCCEEEEecCCC-----eEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018 149 GGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (288)
Q Consensus 149 ~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~ 220 (288)
.+.-..++|-|+|..+++-..|| .|.++. ++|-.-..+ .+....+..++|+-....++.+ ..+.|.+|-.
T Consensus 246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwtt 323 (1243)
T COG5290 246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTT 323 (1243)
T ss_pred ccchhccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEc
Confidence 34445689999999999977554 355554 222111111 1223345566776554444443 3567999976
Q ss_pred CCCceeEEEcCCCccccCeEEEEEcCC
Q 023018 221 KSGENIHVIRGHPYHTEGLTCLTISAD 247 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (288)
.+..-...... ....+.-+.|+|.
T Consensus 324 kNyhWYLK~e~---~ip~~s~vkwhpe 347 (1243)
T COG5290 324 KNYHWYLKVER---QIPGISYVKWHPE 347 (1243)
T ss_pred cceEEEEEEee---cCCCcceeeeccc
Confidence 65432222211 2344566788883
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=1.7 Score=41.91 Aligned_cols=154 Identities=18% Similarity=0.296 Sum_probs=90.4
Q ss_pred EEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEE--------cCCCCEEEEecCCCeEEEEECCc-
Q 023018 111 SSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--------HPRGHIVLAGSEDSTVWMWNADR- 180 (288)
Q Consensus 111 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~- 180 (288)
..+-+-|. ++..++ -|..+.+|+..++.....+.+-...|..+.. -|.=+++++-+.--.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 34444443 333333 4788999999997777766665555555543 22223344433445566664421
Q ss_pred ---cc---E--EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE--EEeCCCC---c--------------eeEEEcCCC
Q 023018 181 ---AA---Y--LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR--VWNPKSG---E--------------NIHVIRGHP 233 (288)
Q Consensus 181 ---~~---~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~--i~d~~~~---~--------------~~~~~~~~~ 233 (288)
+. . ..++......|+++....+|+.+++|- ||.|+ +|....+ + .+..+...+
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11 0 122223456788999888888777665 55443 2222211 0 011111111
Q ss_pred -ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 234 -YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 234 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
.+..+|..+.....-.+|.+-+..|.|.+|++..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 3567899999998888999999999999999986
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.98 E-value=4.8 Score=33.66 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCcEEEEEeCC-----------CeEEEEEccCCeeeEeeccccCcEEE--EEEecCCCEEEEEeCC
Q 023018 76 DATLVATGGGD-----------DKGFFWRINQGDWASEIQGHKDSVSS--LAFSMDGQLLASGGLD 128 (288)
Q Consensus 76 ~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d 128 (288)
++.+.+.|+.. ..+..||..+.+.............. ....-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 55677777653 24777888776554432111111111 1112367777777654
No 483
>PLN02193 nitrile-specifier protein
Probab=92.96 E-value=6 Score=34.77 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCcEEEEEeCC-----CeEEEEEccCCeeeEeecc----ccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCce
Q 023018 76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNL 141 (288)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 141 (288)
++.+++.|+.+ ..+.+||+.+.+....... ....-.+++. -++++++.|+.+ ..+..||+.+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566677654 3578888887665432211 1111122222 245566666644 3467788876653
Q ss_pred eEEec-----cCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCcccEEEEeec-----cCCCeEEEEEcCCCCEEE
Q 023018 142 KCTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTIC 207 (288)
Q Consensus 142 ~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~ 207 (288)
...-. ..........+ ++++++.++.+ ..+.+||+.+.+-...-.. ......++.+ +++.++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence 32111 11111122222 56777777655 4589999887643222110 1111122222 456666
Q ss_pred EEeCC--------------CeEEEEeCCCCc
Q 023018 208 TGSDD--------------ATLRVWNPKSGE 224 (288)
Q Consensus 208 ~~~~d--------------g~i~i~d~~~~~ 224 (288)
.|+.. ..+.+||+.+.+
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCE
Confidence 77643 247889987664
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.92 E-value=1.2 Score=33.12 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCC------CEEEEecCCCeEEEEECCc
Q 023018 150 GGVEWVSWHPRG------HIVLAGSEDSTVWMWNADR 180 (288)
Q Consensus 150 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 180 (288)
..+..++|||.| -+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 2788889999999997653
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.85 E-value=0.75 Score=41.20 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred CCCCEEEEecCCCeEEEEECCc----ccEEEEe-----------e-----------ccCCCeEEEEEcC----CCCEEEE
Q 023018 159 PRGHIVLAGSEDSTVWMWNADR----AAYLNMF-----------S-----------GHGSSVTCGDFTP----DGKTICT 208 (288)
Q Consensus 159 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~-----------~-----------~~~~~i~~~~~~p----~~~~l~~ 208 (288)
++...++++..||.+....... +...... . .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888999888887653 1111110 0 0123456666666 6789999
Q ss_pred EeCCCeEEEEeCCCCceeEEEc
Q 023018 209 GSDDATLRVWNPKSGENIHVIR 230 (288)
Q Consensus 209 ~~~dg~i~i~d~~~~~~~~~~~ 230 (288)
.+.|+.||+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866553
No 486
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=92.66 E-value=5.9 Score=37.00 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=75.3
Q ss_pred eCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCC--------EEEEEeCCCeEEEEeC----CCCceeE-----Ee
Q 023018 84 GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQ--------LLASGGLDGLVQIWDP----SSGNLKC-----TL 145 (288)
Q Consensus 84 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~--------~l~~~~~dg~i~i~d~----~~~~~~~-----~~ 145 (288)
+.|..+.+|++.++..-+.+......|..++.- |..+ .|+++ ....+.++-+ .+++.-. ..
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~v 177 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVV 177 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEE
Confidence 456899999999766555544434444444432 3221 12221 2233333322 2222111 12
Q ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc--------ccE-------------E---EEeeccCCCeEEEEEcC
Q 023018 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR--------AAY-------------L---NMFSGHGSSVTCGDFTP 201 (288)
Q Consensus 146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~-------------~---~~~~~~~~~i~~~~~~p 201 (288)
......|.++.-+.+|+.+++|..| +.+|.+.- .++ + ..+..|+..|..++...
T Consensus 178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence 2344568888888889999998887 55565420 000 1 11123556677777777
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 023018 202 DGKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~ 222 (288)
....|++-.....|+-|-+..
T Consensus 256 sRg~ly~Lr~kS~Vray~itk 276 (1263)
T COG5308 256 SRGLLYVLRKKSAVRAYSITK 276 (1263)
T ss_pred cccceeeecccceeeeEeeec
Confidence 666777777777888887653
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.47 E-value=1 Score=38.36 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=91.6
Q ss_pred ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE--eccCCC----CEE-EEEEcCCCCEEEEecCCCeEEEE-E
Q 023018 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--LEGPGG----GVE-WVSWHPRGHIVLAGSEDSTVWMW-N 177 (288)
Q Consensus 106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~-d 177 (288)
....+..+-..|+|+.+.+-+. ..+.++++.+...... .....+ .|+ .+..-..|.-++++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456677888999997776654 6788888765432211 111111 111 11122345678888888988776 5
Q ss_pred CCccc-----EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018 178 ADRAA-----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (288)
Q Consensus 178 ~~~~~-----~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (288)
.+... .++.++-...++..+.-....+-+++-+..|++.++.....+.+. +.. .-..+.-+++||.+.+|+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~---~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER---AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhh---hhcCcceeeeCcccchhe
Confidence 54431 222232222333333222234457777888888887654433322 221 223566789999998887
Q ss_pred EEeCCCcEEEEEcCCCcE
Q 023018 253 SGSKDGSVHMVNITTGKV 270 (288)
Q Consensus 253 ~~~~dg~i~iwd~~t~~~ 270 (288)
+- ..|.|+++.+.+..+
T Consensus 374 ~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ee-cCCceEEEEecCCCC
Confidence 64 567899999887543
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.22 E-value=5.4 Score=32.45 Aligned_cols=134 Identities=7% Similarity=0.102 Sum_probs=80.8
Q ss_pred eEEEEeCCCCceeEEecc------CCCCEEEEEEcCCC-----CEEEEe-cCCCeEEEEECCcccEEEEeec--------
Q 023018 130 LVQIWDPSSGNLKCTLEG------PGGGVEWVSWHPRG-----HIVLAG-SEDSTVWMWNADRAAYLNMFSG-------- 189 (288)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-------- 189 (288)
.|.+||+.+++.++++.- ..+.+..+.+.... .+++.+ +..+.|.++|+.+++.-+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 788899999988777643 34567888887632 233333 3446899999998765443321
Q ss_pred -----------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-----Cc---------eeEEEcCCCccccCeEE
Q 023018 190 -----------HGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKS-----GE---------NIHVIRGHPYHTEGLTC 241 (288)
Q Consensus 190 -----------~~~~i~~~~~~p---~~~~l~~~~~dg~i~i~d~~~-----~~---------~~~~~~~~~~~~~~v~~ 241 (288)
....+..++.+| +++.|+.+...+. ++|.+.+ .. .+..+.. .......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 123366667766 6667776665442 2332221 10 1122211 1234567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018 242 LTISADSTLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~iwd~~t 267 (288)
++++++|.++++--..+.|..|+..+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTT
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCC
Confidence 88899999988888899999999886
No 489
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.20 E-value=0.9 Score=38.68 Aligned_cols=166 Identities=12% Similarity=0.108 Sum_probs=96.0
Q ss_pred CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-e-ccccC----cEE-EEEEecCCCEEEEEeCC
Q 023018 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-I-QGHKD----SVS-SLAFSMDGQLLASGGLD 128 (288)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~-~~~~~----~i~-~~~~~~~~~~l~~~~~d 128 (288)
.+..+..--.+|..+-..| +++.++.-+. ..+.++++.+...... + ....+ .|+ .+..-..|..++++..|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3344566667888899999 6777666555 6788888876432211 1 11011 111 11122345567888889
Q ss_pred CeEEEE-eCCCCce-----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018 129 GLVQIW-DPSSGNL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (288)
Q Consensus 129 g~i~i~-d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~ 202 (288)
|.|.-| |.+.+.. ++.++-....+..+.-..+-+-+++-+..|++..+.....+.+..-. .-..+.-+++||.
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~ 368 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN 368 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc
Confidence 888766 4443221 11222222333333322344567777788888887765554433222 2235667889999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce
Q 023018 203 GKTICTGSDDATLRVWNPKSGEN 225 (288)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~ 225 (288)
+.+|++-. .|.++++.+.+..+
T Consensus 369 ~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred cchheeec-CCceEEEEecCCCC
Confidence 99988754 57799998876544
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.98 E-value=5.5 Score=32.23 Aligned_cols=93 Identities=17% Similarity=0.339 Sum_probs=58.6
Q ss_pred CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec------CCCeEEEEECCcccEEEEeec-----cCCCeEEE
Q 023018 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSG-----HGSSVTCG 197 (288)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~ 197 (288)
..|++||..+.+....-..-.+.|+.+.|..+.++++.|. ....+..||..+..- ..+.. -.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3599999887776555555667899999986666666664 345688999876542 22222 24678887
Q ss_pred EEcC-CCCEEE-EEe-C--CCeEEEEeCCC
Q 023018 198 DFTP-DGKTIC-TGS-D--DATLRVWNPKS 222 (288)
Q Consensus 198 ~~~p-~~~~l~-~~~-~--dg~i~i~d~~~ 222 (288)
.+.. ++..+. .|. . +..|..||=.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7744 443343 333 2 33577776443
No 491
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=91.78 E-value=5.5 Score=31.59 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCEEEEEEcCC-------CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC----CCCEEEEEeCCCeEEEE
Q 023018 150 GGVEWVSWHPR-------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP----DGKTICTGSDDATLRVW 218 (288)
Q Consensus 150 ~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p----~~~~l~~~~~dg~i~i~ 218 (288)
..|+|++--.. -..|+.|+.+|.|+|.|.+....+..+....-++ .+..+- -.-++++++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 45777765331 2389999999999999998888777777555544 222221 22357888899988764
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.73 E-value=12 Score=35.30 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=92.6
Q ss_pred cccCcEEEEEEe---c----CCCEEEEEeCCCeEEEEeCCCC---------------ceeEEec---cCCCCEEEEEEcC
Q 023018 105 GHKDSVSSLAFS---M----DGQLLASGGLDGLVQIWDPSSG---------------NLKCTLE---GPGGGVEWVSWHP 159 (288)
Q Consensus 105 ~~~~~i~~~~~~---~----~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~---~~~~~i~~~~~~~ 159 (288)
....+|..|+|. . ..++|++= ....+.|+...-. .++..+. ....+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356789999987 2 12355554 3456777762111 1222232 1344688899999
Q ss_pred -CCCEEEEecCCCeEEEEECCccc-----EEEEeeccC----------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018 160 -RGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHG----------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (288)
Q Consensus 160 -~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~----------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~ 223 (288)
+...||+....|...||++.... .+....... .....+.|.++...|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 55699999999999999992111 111111111 22347889888888888774 56889999876
Q ss_pred ceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 023018 224 ENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t 267 (288)
.....+... .....|..+.-+|. ..+++.-. ...|...++.+
T Consensus 235 ~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccC-CChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 553312211 13456777777764 22222222 24566666665
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.72 E-value=8.4 Score=33.56 Aligned_cols=110 Identities=8% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEee-----ccCCCeEEEEEcCCC------CEEEEEe----
Q 023018 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS-----GHGSSVTCGDFTPDG------KTICTGS---- 210 (288)
Q Consensus 148 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-----~~~~~i~~~~~~p~~------~~l~~~~---- 210 (288)
.-...+.|+|.|++++|++--..|.|++++..++. .+..+. ........|+++|+- .+|++..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 33457889999999877776556999999865543 221111 135678999999874 3454442
Q ss_pred ------CCCeEEEEeCCCC-----ceeEEEcCCC-ccccCeEEEEEcCCCCEEEEEeCC
Q 023018 211 ------DDATLRVWNPKSG-----ENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKD 257 (288)
Q Consensus 211 ------~dg~i~i~d~~~~-----~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 257 (288)
....|.-|.+... .....+...+ .....-..|.|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444444311 1111222211 011224567899999877765544
No 494
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=3.7 Score=38.28 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=53.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE------Ec-CC-C---C-EEEEEeCCCcEEE
Q 023018 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT------IS-AD-S---T-LALSGSKDGSVHM 262 (288)
Q Consensus 195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~------~~-~~-~---~-~l~~~~~dg~i~i 262 (288)
..++.+|+|++.++...=|.|.+.|+..+..++.+.+. ....+.-+. ++ |. . . +.+-+-.-|.+-|
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGY--RDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEV 402 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGY--RDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEV 402 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhccc--ccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHH
Confidence 45788999999998888899999999888777777664 222222222 01 21 1 1 1233456788999
Q ss_pred EEcCCCcEEEEe
Q 023018 263 VNITTGKVCCLN 274 (288)
Q Consensus 263 wd~~t~~~~~~~ 274 (288)
|.+.+|-.+..+
T Consensus 403 W~~q~gpRV~Af 414 (1244)
T KOG2727|consen 403 WQMQTGPRVLAF 414 (1244)
T ss_pred HHhccCCeEEEE
Confidence 999999888766
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.11 E-value=4.6 Score=31.88 Aligned_cols=94 Identities=15% Similarity=0.248 Sum_probs=52.3
Q ss_pred eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEeCCC---CceeEEEcCCCccccCeEEEEEc
Q 023018 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTIS 245 (288)
Q Consensus 172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d--g~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~ 245 (288)
.-.+||+.+++....-........+-.+.|+|+.|.+|+. + ..+++++... ..........-.....-.+...-
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4568998887543322222233334457789999998875 2 3588888654 11111111100123344455667
Q ss_pred CCCCEEEEEeCCC-cEEEEEc
Q 023018 246 ADSTLALSGSKDG-SVHMVNI 265 (288)
Q Consensus 246 ~~~~~l~~~~~dg-~i~iwd~ 265 (288)
|||++|+.|+... ...+|.-
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCEEEEeCcCCCcccccCC
Confidence 7999999988764 3444443
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.74 E-value=9.4 Score=32.33 Aligned_cols=194 Identities=10% Similarity=0.163 Sum_probs=106.6
Q ss_pred EEEcCC--CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe----cCCCE--EEEEe-CC---CeEEEEeCC
Q 023018 70 VACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDGQL--LASGG-LD---GLVQIWDPS 137 (288)
Q Consensus 70 ~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---g~i~i~d~~ 137 (288)
|-.+|. ...+++.....+-+.+||+.. +.+..+. .+..+.+..- -.++. |++++ .+ ..|++|.+.
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence 444442 446777888889999999875 4455553 2333333321 23442 44443 32 469999775
Q ss_pred CC-ceeEEecc-------CCCCEEEEEE--cC-CCC-EEEEecCCCeEEEEECC---cc----cEEEEeeccCCCeEEEE
Q 023018 138 SG-NLKCTLEG-------PGGGVEWVSW--HP-RGH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCGD 198 (288)
Q Consensus 138 ~~-~~~~~~~~-------~~~~i~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~ 198 (288)
.. ..+..+.. ....++.+|+ ++ ++. +.++..++|.+..|-+. .+ ++++.|.. .+.+-.+.
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV 214 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV 214 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence 31 22333321 1123667776 33 344 56667788988877664 22 45677764 45788888
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCC--CceeEEE--cCCCccccCeEEEEEcC--CC-CEEEEEe-CCCcEEEEEcCC
Q 023018 199 FTPDGKTICTGSDDATLRVWNPKS--GENIHVI--RGHPYHTEGLTCLTISA--DS-TLALSGS-KDGSVHMVNITT 267 (288)
Q Consensus 199 ~~p~~~~l~~~~~dg~i~i~d~~~--~~~~~~~--~~~~~~~~~v~~~~~~~--~~-~~l~~~~-~dg~i~iwd~~t 267 (288)
......+|+.+-.+.-|.-|+... +.....+ .........+-.|++-. ++ .+|++++ .+++..+|+...
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888888999999998888887752 2211222 11112345677776643 33 3555444 467899999875
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.60 E-value=0.84 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 250 LALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 250 ~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
.+++++.+|.++.+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888999999999999998764
No 498
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.48 E-value=9.2 Score=31.85 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCeEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018 192 SSVTCGDFTP-------DGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (288)
Q Consensus 192 ~~i~~~~~~p-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (288)
..+..+.|.+ .+.+|++.-..+.|....+..+..+..... .......+..+++.|||.++++-..+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4566666653 344555555566787777764433221111 111344789999999998888877888775
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.08 E-value=9.4 Score=31.30 Aligned_cols=121 Identities=11% Similarity=0.190 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-C----eEEEEEcCCCCEEEEEeCCCeEEEEeCC-----
Q 023018 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-S----VTCGDFTPDGKTICTGSDDATLRVWNPK----- 221 (288)
Q Consensus 152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~----i~~~~~~p~~~~l~~~~~dg~i~i~d~~----- 221 (288)
++++...++|.+|+++-.-..|.+.+-++++.+..+.+... . -...+|..+-+++-.+..++.|.++|=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~ 225 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFN 225 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCC
Confidence 67788888899999998889999999999998888865511 1 1123333344444444556667777642
Q ss_pred ---------------CCc--eeEEEc--CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018 222 ---------------SGE--NIHVIR--GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273 (288)
Q Consensus 222 ---------------~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~ 273 (288)
+.. .+..+. ........--++..-|+|+.|+.=+..|.+.-++. .|+++..
T Consensus 226 ~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~-~G~vv~~ 295 (299)
T PF14269_consen 226 GTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTP-DGEVVWE 295 (299)
T ss_pred CCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECC-CCCEEEE
Confidence 111 011111 00011111223455677888877777776666653 3555543
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.03 E-value=17 Score=34.25 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=99.0
Q ss_pred eEee-cCCCCEEEEEEc---CC---CCcEEEEEeCCCeEEEEEcc------C---------CeeeEeecc---ccCcEEE
Q 023018 58 HIFS-GHSDEVYSVACS---PT---DATLVATGGGDDKGFFWRIN------Q---------GDWASEIQG---HKDSVSS 112 (288)
Q Consensus 58 ~~~~-~h~~~v~~~~~~---~~---~~~~l~~~~~dg~i~iw~~~------~---------~~~~~~~~~---~~~~i~~ 112 (288)
..+. .-..+|..|+|. .. ...+|++-. ...+.|+... . ..++..+.. ...+..+
T Consensus 72 ~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 72 GAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred ceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 3445 567899999998 21 224555544 4567777721 1 122333331 2346778
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEeCCCCc-----eeEEeccC----------CCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 023018 113 LAFSMD-GQLLASGGLDGLVQIWDPSSGN-----LKCTLEGP----------GGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (288)
Q Consensus 113 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 176 (288)
++|+|. .+.||+....|...||++.... ........ .+.-..+.|.++.+.|++++. ..+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEE
Confidence 999984 4589999999999999992111 11111111 123447889888888888877 778999
Q ss_pred ECCcccEEE--EeeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 023018 177 NADRAAYLN--MFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKS 222 (288)
Q Consensus 177 d~~~~~~~~--~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~ 222 (288)
|+++..... ........|..+.-+|. ..+++.-+ ...|...++..
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 998875533 12224567888888885 22333332 35687778776
Done!