Citrus Sinensis ID: 023019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccEEEEcccccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHccccHHHHHHHHHccEEcccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccEccccccHEEccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEcccccccccccccEEEEEEccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEEcHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASStafvetkpsepsfveneastsknvlacpicykpltwigdsslsiesaagsslqcntckktysgvgthfdmtaasgskdygelmspateffrmpFMSFIYErgwrqnfvwggfpgpeKEFELMKGYlkpvlggniidascgsglfsRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkenfLLVRadisrlpfasssidAVHAGAaihcwsspstgvgVFFQVTLIIHVVEDLAVSF
Flexible Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASSTafvetkpsepsfveneastsknvlACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Low Complexity Region (SEG)
MATIvssssffsvsLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDsslsiesaagsslQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Disordered region (IsUnstruct)
********************************PIFIRKFVAKIRASSTAF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLA***
Disordered Region (DISOPRED)
**********************************************************************VLACPICYKPLTWIGD*******A*GSSLQCNTCKKTYSGVGTHFDMTAASGSK****L*SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Disordered Region (DISEMBL)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRAS*********************SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Disordered Region (DISPRO)
**********FSVSLP*******RCS**P*PSPIFIRKFVAKIRASS*AF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHVVEDLAVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q8LBV4	355	Uncharacterized methyltra	yes	no	0.725	0.588	0.656	7e-83
Q0WPT7	352	Uncharacterized methyltra	no	no	0.711	0.582	0.504	4e-60
Q5ZT34	284	Malonyl-CoA O-methyltrans	yes	no	0.364	0.369	0.347	1e-05
Q6D3C1	253	Malonyl-CoA O-methyltrans	yes	no	0.305	0.347	0.306	0.0002
D2T333	262	Malonyl-CoA O-methyltrans	yes	no	0.274	0.301	0.319	0.0002
Q24W96	253	Demethylmenaquinone methy	yes	no	0.406	0.462	0.284	0.0007

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  307 bits (786), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 145/221 (65%), Positives = 168/221 (76%), Gaps = 12/221 (5%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277
            S+DAVHAGAA+HCW SPS+ V          GVF   T I
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  231 bits (589), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 139/206 (67%), Gaps = 1/206 (0%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
            V ACP+CY+PL   G S +++++   S  +C  C KTYS    + D+T  +   DY E+
Sbjct: 77  QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136

Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
               TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSS 248
           LFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +VRAD+SRLPF S S
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGS 256

Query: 249 IDAVHAGAAIHCWSSPSTGVGVFFQV 274
           +DAVHAGAA+HCW SP+  +    +V
Sbjct: 257 VDAVHAGAALHCWPSPTNAIAEICRV 282

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5ZT34|BIOC_LEGPH Malonyl-CoA O-methyltransferase BioC OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=bioC PE=3 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 10/115 (8%)

Query: 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225
           FE ++ YLK +    I+D  CG G FS+  A     + +V +D S  ML+Q  +      
Sbjct: 33  FERLQ-YLK-IAPRRILDLGCGPGFFSKELALLYPKAQIVGMDLSFAMLEQARKKQGWRR 90

Query: 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVTLIIHV 280
            +P     LV AD+ ++PFA+ + D V A   IH WSS S G+ VF ++  +++V
Sbjct: 91  KWP-----LVSADMQKMPFATGAFDLVFANQVIH-WSS-SLGM-VFRELNRVMNV 137

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|Q6D3C1|BIOC_ERWCT Malonyl-CoA O-methyltransferase BioC OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=bioC PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
           G  ++DA CG+G FSR + ++G    V ALD S  ML    E          + +L    
Sbjct: 45  GLQVLDAGCGTGHFSRYWRQAG--RNVTALDLSAEMLAYARE------QHAADRYL--EG 94

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVT 275
           DI  LP A S +D  ++  A+    S    +G  +++T
Sbjct: 95  DIENLPLADSCVDICYSNLAVQWCDSLPRALGELYRIT 132

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|D2T333|BIOC_ERWP6 Malonyl-CoA O-methyltransferase BioC OS=Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) GN=bioC PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           E +  + +P     ++DA CG+G FS+ +   G +  V ALD SE ML+   E    +  
Sbjct: 43  ERLLEHARPGNALRVLDAGCGTGWFSQRWRAGGHW--VTALDLSEKMLQHARENQAADCY 100

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS 263
            P         DI  LPFA +S D         CWS+
Sbjct: 101 LP--------GDIEALPFADASFD--------RCWSN 121

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) (taxid: 644651)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 20/137 (14%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G 199
            MSF  ++GWR+  V        +  E      KP  G  ++D  CG+   S   A + G
Sbjct: 43  LMSFGLDKGWRKKAV--------QTVEA-----KP--GMTMVDICCGTAQLSLELAMTVG 87

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAGAAI 258
               +  LD+SENMLK+  E +   +  P  + + +R  D   LPFA +S D    G  +
Sbjct: 88  EQGQITGLDFSENMLKKAQENL---AGSPYRSIIELRQGDAMNLPFADNSFDGATVGWGL 144

Query: 259 HCWSSPSTGVGVFFQVT 275
                   GV    +V 
Sbjct: 145 RNLPDLEKGVQEMIRVV 161

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
225459328	350	PREDICTED: uncharacterized methyltransfe	0.954	0.785	0.626	5e-96
224066941	293	predicted protein [Populus trichocarpa]	0.770	0.757	0.711	6e-95
388517893	352	unknown [Lotus japonicus]	0.854	0.698	0.653	6e-94
356508108	352	PREDICTED: uncharacterized methyltransfe	0.864	0.707	0.633	1e-92
255545696	351	S-adenosylmethionine-dependent methyltra	0.923	0.757	0.607	2e-91
297842589	352	predicted protein [Arabidopsis lyrata su	0.760	0.622	0.646	2e-82
18411840	355	S-adenosyl-L-methionine-dependent methyl	0.725	0.588	0.656	4e-81
449437246	313	PREDICTED: uncharacterized methyltransfe	0.75	0.690	0.618	6e-76
449502868	376	PREDICTED: uncharacterized methyltransfe	0.75	0.574	0.618	2e-75
224082138	244	predicted protein [Populus trichocarpa]	0.576	0.680	0.740	2e-71

>gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 183/292 (62%), Positives = 214/292 (73%), Gaps = 17/292 (5%)

Query: 1   MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST---AFVETKPS 56
           MA +++   F +V +PG+LG  R    KP  SP  +   F AK+RASST     VETKP 
Sbjct: 1   MARVIAK--FPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKP- 57

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE E S  K++LACPICY+P TW GD  LS+ES  GSS  C++CKK   G  TH D
Sbjct: 58  DPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLD 117

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T A+G+K+Y E M  ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE  FPKEN LLVR
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVR 237

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
           ADISRLPFASSS+DAVHAGAA+HCW SPS  V          GVF   T ++
Sbjct: 238 ADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLL 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 190/232 (81%), Gaps = 10/232 (4%)

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE + S+SKN+LACP+CY+P+T IG + LS++SA GSSLQC+TCKKTYSG  TH +
Sbjct: 1   DPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQCSTCKKTYSGKETHLE 60

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T ASGSK Y + M  ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61  LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPKEN +LVR
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKENLILVR 180

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
           ADI+RLPF S S+DAVHAGAAIHCW SPS  V          GVF   T I+
Sbjct: 181 ADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYIL 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus]

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 201/260 (77%), Gaps = 14/260 (5%)

Query: 34  IFIRKFVAKIRASSTA--FVETKPSEPSFVEN-EASTSKNVLACPICYKPLTWIGDSSLS 90
           +F  KF  ++RA STA   V+ KP++   V++ E   S N LACP+C+  LTW GDS LS
Sbjct: 33  VFPSKFPLQLRAFSTASPIVDPKPTDSIVVDDKEVRRSSNSLACPVCFDSLTWTGDSGLS 92

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           ++S   SSLQC+TC+KTY G  TH D+TA SG+K+YG+LM  +TE FR+P +SF+YERGW
Sbjct: 93  VDSIPVSSLQCSTCQKTYVGNQTHLDLTATSGAKNYGDLMPASTELFRVPLISFLYERGW 152

Query: 151 RQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           RQ F VWGGFPGPEKEFELMKG+L PVLGGNIIDASC SGLFSR+FAKSGLFSLVVALDY
Sbjct: 153 RQTFSVWGGFPGPEKEFELMKGFLNPVLGGNIIDASCASGLFSRLFAKSGLFSLVVALDY 212

Query: 210 SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV- 268
           SENML QCYEF+QQE NFPKENF+LVRADI+RLPF +SS+DAVHAGAA+HCW SPS  V 
Sbjct: 213 SENMLAQCYEFIQQEDNFPKENFILVRADIARLPFVTSSVDAVHAGAALHCWPSPSAVVA 272

Query: 269 ---------GVFFQVTLIIH 279
                    GVF   T I+ 
Sbjct: 273 EISRVLRPGGVFVATTYILD 292

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/270 (63%), Positives = 203/270 (75%), Gaps = 21/270 (7%)

Query: 30  NPSPIFIRK-FVAKI----RASSTAFV--ETKPSEPSFV---ENEASTSKNVLACPICYK 79
           +P+ +F R  F AK+    RASST+F+  ET P E + V   ++ +S S N LACP+CY 
Sbjct: 22  HPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYD 81

Query: 80  PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRM 139
            LTW GD   S+++  GSS QC+TC+KTY G  TH D+TA  G+K YGE M  +TE FR+
Sbjct: 82  SLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRV 141

Query: 140 PFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198
           P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP+LGGNIIDASC SGLFSR+FAKS
Sbjct: 142 PLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKS 201

Query: 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258
           GLFS +VALDYSENML+QCYEF+QQE NFPKENF+LVRADISRLPF SSS+DAVHAGAA+
Sbjct: 202 GLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILVRADISRLPFVSSSVDAVHAGAAL 261

Query: 259 HCWSSPSTGV----------GVFFQVTLII 278
           HCW SP   V          GVF   T I+
Sbjct: 262 HCWPSPLAAVAEISRVLRPGGVFVATTYIL 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/285 (60%), Positives = 208/285 (72%), Gaps = 19/285 (6%)

Query: 12  SVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST-----AFVETKPSEPSFVENE- 64
           S  LP + GNSR+    P   PIF R  F AK+RASS+     A +E+KP++   VE E 
Sbjct: 7   SYYLPNQFGNSRQFLFNPYTRPIFKRSNFAAKVRASSSTSTSTALLESKPADAVVVEKEE 66

Query: 65  -ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGS 123
            + +S N++ACPICY+PL+ IGD  LS++     SL+C +CKK Y G  TH ++T ASG+
Sbjct: 67  VSRSSTNIIACPICYEPLSLIGDRLLSVD-IGECSLRCGSCKKIYYGKETHIELTVASGA 125

Query: 124 KDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIID 183
             Y + M  ATEFFR+  +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPVLGGNIID
Sbjct: 126 SKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPVLGGNIID 185

Query: 184 ASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243
           ASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP EN + VRADISRLP
Sbjct: 186 ASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTENLISVRADISRLP 245

Query: 244 FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
           F   S+DAVHAGAAIHCW SPS  V          GVF   T I+
Sbjct: 246 FLFGSVDAVHAGAAIHCWPSPSAAVAEISRVLRPGGVFVASTFIL 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 175/232 (75%), Gaps = 13/232 (5%)

Query: 59  SFVENEAST-SKNVLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGVGTHFD 116
           S +E E +   K VLACPICY  L WI   +  IESA +G+ LQCNTCK++YSG  TH D
Sbjct: 59  SVIEKEKTRGEKKVLACPICYNSLAWISQPNGLIESATSGTQLQCNTCKRSYSGNETHLD 118

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 235
           LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP +E  +LV
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNREKLVLV 238

Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277
           RADI+RLPF S S+DAVHAGAA+HCW SPS+ V          GVF   T I
Sbjct: 239 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 145/221 (65%), Positives = 168/221 (76%), Gaps = 12/221 (5%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277
            S+DAVHAGAA+HCW SPS+ V          GVF   T I
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 170/228 (74%), Gaps = 12/228 (5%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 26  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 85

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 86  GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 144

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E  +L+RADI+
Sbjct: 145 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 204

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
           RLPFASSS+DAVHAGAA+HCW SPS  V          GVF   T I+
Sbjct: 205 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIM 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502868|ref|XP_004161765.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 170/228 (74%), Gaps = 12/228 (5%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 89  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 148

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 149 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 207

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E  +L+RADI+
Sbjct: 208 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 267

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
           RLPFASSS+DAVHAGAA+HCW SPS  V          GVF   T I+
Sbjct: 268 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIM 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 146/177 (82%), Gaps = 11/177 (6%)

Query: 113 THFDMTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKG 171
           TH ++T ASGSK YG++  P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK 
Sbjct: 7   THLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKD 66

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
           YLKPVLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPKEN
Sbjct: 67  YLKPVLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKEN 126

Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278
            +LVRADI+RLPF S S+DAV AGAAIHCW SPS  V          GVF   T I+
Sbjct: 127 LILVRADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYIL 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.819	0.664	0.598	4e-74
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.708	0.579	0.497	7e-54
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.340	0.379	0.276	0.00047
UNIPROTKB|Q487L0	251	CPS_1006 "Putative uncharacter	0.218	0.250	0.380	0.00098
TIGR_CMR|CPS_1006	251	CPS_1006 "hypothetical protein	0.218	0.250	0.380	0.00098

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 146/244 (59%), Positives = 174/244 (71%)

Query:    39 FVAK-IRASSTAF-VETKP-SEPSFV---ENEASTSKNVLACPICYKPLTWIGD-XXXXX 91
             FV++   ASS +  VET   S   FV   +++    K +LACPICY  L WI        
Sbjct:    37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIE 96

Query:    92 XXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151
                     QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWR
Sbjct:    97 SAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWR 156

Query:   152 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
             QNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSE
Sbjct:   157 QNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSE 216

Query:   212 NMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGV 270
             NML+QCYE + +E NFP KE  +LVRADI+RLPF S S+DAVHAGAA+HCW SPS+ V  
Sbjct:   217 NMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAE 276

Query:   271 FFQV 274
               +V
Sbjct:   277 ISRV 280

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 102/205 (49%), Positives = 132/205 (64%)

Query:    71 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELM 130
             V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+ 
Sbjct:    78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVK 137

Query:   131 SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGL 190
                TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSGL
Sbjct:   138 PITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGL 197

Query:   191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSSI 249
             FSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +VRAD+SRLPF S S+
Sbjct:   198 FSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGSV 257

Query:   250 DAVHAGAAIHCWSSPSTGVGVFFQV 274
             DAVHAGAA+HCW SP+  +    +V
Sbjct:   258 DAVHAGAALHCWPSPTNAIAEICRV 282

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 111 (44.1 bits), Expect = 0.00047, P = 0.00047
 Identities = 29/105 (27%), Positives = 53/105 (50%)

Query:   161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
             GP+ ++ + +  ++      ++D + G G  + + A   LF  VVALD +E ML+   +F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
             +    +   EN   V  +   LPF+ SS D +    A H +++P+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPA 124

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

UNIPROTKB|Q487L0 CPS_1006 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:   178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
             G  I+DA CG G  +RI AK    +LV+ +D S++ + +  E    +  F  EN+ LVRA
Sbjct:    76 GEIILDACCGVGQSTRILAKQNPQALVIGVDKSDHRINRNVEGFDVDDGFSAENYHLVRA 135

Query:   238 DIS 240
             D++
Sbjct:   136 DLN 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1006 CPS_1006 "hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:   178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
             G  I+DA CG G  +RI AK    +LV+ +D S++ + +  E    +  F  EN+ LVRA
Sbjct:    76 GEIILDACCGVGQSTRILAKQNPQALVIGVDKSDHRINRNVEGFDVDDGFSAENYHLVRA 135

Query:   238 DIS 240
             D++
Sbjct:   136 DLN 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       265   0.00093  114 3  11 22  0.44    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  202 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.27u 0.10s 21.37t   Elapsed:  00:00:01
  Total cpu time:  21.27u 0.10s 21.37t   Elapsed:  00:00:01
  Start:  Sat May 11 07:07:59 2013   End:  Sat May 11 07:08:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1548.1 hypothetical protein (293 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-13
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	3e-10
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	1e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-08
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	3e-08
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	3e-07
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	6e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-05
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	3e-05
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	3e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	5e-04
pfam03966	47	pfam03966, Trm112p, Trm112p-like protein	8e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	0.001
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	0.003

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
           +D  CG+GL +   A+ G  + V  +D S  ML    +         +     V  D   
Sbjct: 1   LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALARK---------RAPRKFVVGDAED 50

Query: 242 LPFASSSIDAVHAGAAIHCWSSPS 265
           LPF   S D V +   +H    P 
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPE 74

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
             MSF   R WR+  +            L+   +KP  G  ++D +CG+G  + + AKS 
Sbjct: 29  DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
               VV LD SE+ML+      ++      +N   V  D   LPF  +S DAV     + 
Sbjct: 74  GTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130

Length = 238

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           ++D  CG+G  +R   K    +  +A D S  ML Q      +        F+    D  
Sbjct: 38  VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-----KTKLSENVQFIC--GDAE 90

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPST 266
           +LP   SS D + +  A+      S 
Sbjct: 91  KLPLEDSSFDLIVSNLALQWCDDLSQ 116

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           I+D  CG+G   R  A++G  S V  +D S+  L+   E +      PK  F  V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERL--RDKGPKVRF--VVADAR 55

Query: 241 RLPFASSSIDAVH-AGAAIHCWSSPS 265
            LPF   S D V  AG ++   S   
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQ 81

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 24/115 (20%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 200
           +SF   R WR+  +                +L    G  ++D +CG+G  +   AK  G 
Sbjct: 31  LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75

Query: 201 FSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISRLPFASSSIDAV 252
              VV LD+SE ML      V +E         N   V+ D   LPF  +S DAV
Sbjct: 76  TGEVVGLDFSEGMLA-----VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAV 125

Length = 239

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 178 GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G  ++D  CG G  +R  A+  G    VV +D SE ML    E  +     P   F  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPNVEF--VR 75

Query: 237 ADISRLPFASSSIDAV 252
            D   LPF   S DAV
Sbjct: 76  GDADGLPFPDGSFDAV 91

Length = 241

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 21/113 (18%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 200
            +SF   R WR+  V                 +    G  ++D +CG+G  +   AKS  
Sbjct: 18  LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62

Query: 201 FSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
               V  +D+S  ML+     V ++ +    N   ++AD   LPF  +S DAV
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAV 110

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK---ENFLL 234
           G  ++D  CG+G  +   A+    + V  +D S  ML+          N           
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA------RENAKLALGPRITF 55

Query: 235 VRADISRLPFASSSIDAVHAGAAIHC 260
           V+ D           DAV  G     
Sbjct: 56  VQGDAPDALDLLEGFDAVFIGGGGGD 81

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
           +D  CG+G   R   ++        +D S   L+   E +            L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 242 LPFASSSIDAVHAGAAIHCWSSP 264
           L     S D V A   +H  + P
Sbjct: 61  LDPG--SFDVVVASNVLHHLADP 81

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
            ++D  CG+G  +   A       V  +D S   L+      +  +    +N  +++ D 
Sbjct: 1   RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELA---RKAAAALLADNVEVLKGDA 56

Query: 240 SRLPF-ASSSIDAVHAGAAIHCW 261
             LP  A  S D + +   +H  
Sbjct: 57  EELPPEADESFDVIISDPPLHHL 79

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 178 GGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G  ++D  CG+G  + I A K G  + VV +D SE  +++  +   ++  +    F+   
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFIQGD 62

Query: 237 A-DISRLPFASSSIDAVHAGAAIHC 260
             ++ +L    +S D V +   ++ 
Sbjct: 63  IEELPQLQLEDNSFDVVISNEVLNH 87

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           ++DA CG G  SR + + G  S V ALD S  ML Q  +  +  +    +++L    DI 
Sbjct: 46  VLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQ--KDAA----DHYLA--GDIE 95

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQVT 275
            LP A+++ D   +  A+    + ST +   ++V 
Sbjct: 96  SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVV 130

Length = 251

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 167 ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
           EL+K  LK    P     ++D + G G  S  F K   +  VVALDY+ENMLK     V 
Sbjct: 40  ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK--MNLVA 93

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
            +          V      LPF   S D V +  A+H
Sbjct: 94  DDK---------VVGSFEALPFRDKSFDVVMSSFALH 121

Length = 226

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 42.6 bits (97), Expect = 1e-04
 Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 129 LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 188
               + E        +         F+       +    L    L P   G ++D  CG+
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59

Query: 189 GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLPFAS 246
           G  + +    G  + VV +D S  ML        +           V AD     LPF  
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLAL---ARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 247 S-SIDAVHAGAAIH 259
           S S D V +   +H
Sbjct: 117 SASFDLVISLLVLH 130

Length = 257

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214
            P+ G  ++DA CG+GL S   AK G  ++V A+D SE M+
Sbjct: 52  DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108
            +LACP+C  PL  +  +           L C  C   Y
Sbjct: 6   EILACPLCKGPLALVEVAGH--YDIEEGELVCPECGLAY 42

The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G + +D  CG+  +S   A++ G    V+ LD+SENML    + V+        N  LV 
Sbjct: 46  GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVH 102

Query: 237 ADISRLPFASSSIDAVHAG 255
            +   LPF  +S D V  G
Sbjct: 103 GNAMELPFDDNSFDYVTIG 121

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G   +D + G+G ++   + S G    VV LD +ENMLK+  +  ++E    K N   ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG---KYNIEFLQ 104

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQV 274
            +   LPF   S D V     +  +      +   F+V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRV 142

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.85
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.77
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.72
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.7
PRK05785	226	hypothetical protein; Provisional	99.69
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.68
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.68
PLN02244	340	tocopherol O-methyltransferase	99.68
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.6
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.59
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.59
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.57
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.55
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.55
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.55
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.54
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.52
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.52
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.51
PRK11207	197	tellurite resistance protein TehB; Provisional	99.51
PRK08317	241	hypothetical protein; Provisional	99.51
PRK06202	232	hypothetical protein; Provisional	99.49
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.47
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.47
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.46
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.46
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.46
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.44
PLN02490	340	MPBQ/MSBQ methyltransferase	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.43
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.43
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.42
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.41
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.41
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.41
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.4
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.4
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.4
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.39
PRK12335	287	tellurite resistance protein TehB; Provisional	99.39
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.38
KOG4300	252	consensus Predicted methyltransferase [General fun	99.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.38
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.37
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.36
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.35
PRK06922	677	hypothetical protein; Provisional	99.34
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.34
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.31
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.3
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.29
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.29
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.28
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
PLN02336	475	phosphoethanolamine N-methyltransferase	99.27
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.26
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.26
PRK14968	188	putative methyltransferase; Provisional	99.26
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.25
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.25
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.25
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.24
PLN03075	296	nicotianamine synthase; Provisional	99.23
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.22
KOG1271	227	consensus Methyltransferases [General function pre	99.21
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.2
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.2
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.2
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.2
PRK07402	196	precorrin-6B methylase; Provisional	99.19
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.18
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.17
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.17
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.17
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.16
TIGR03438	301	probable methyltransferase. This model represents	99.15
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.13
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.12
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.12
PRK14967	223	putative methyltransferase; Provisional	99.12
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.09
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.08
PHA03411	279	putative methyltransferase; Provisional	99.07
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.04
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.04
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.03
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.03
COG4123	248	Predicted O-methyltransferase [General function pr	99.02
PRK04266	226	fibrillarin; Provisional	99.02
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.0
PHA03412	241	putative methyltransferase; Provisional	98.99
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.98
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.98
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.97
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.97
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.96
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.95
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.95
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.93
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.92
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.91
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.9
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.9
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.89
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.89
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.88
TIGR00438	188	rrmJ cell division protein FtsJ.	98.87
COG2890	280	HemK Methylase of polypeptide chain release factor	98.87
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.84
KOG2940	325	consensus Predicted methyltransferase [General fun	98.84
KOG3010	261	consensus Methyltransferase [General function pred	98.82
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.81
PRK04457	262	spermidine synthase; Provisional	98.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.8
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.8
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.8
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.8
PTZ00146	293	fibrillarin; Provisional	98.78
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.76
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.76
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.76
PLN02672	1082	methionine S-methyltransferase	98.73
PRK04148	134	hypothetical protein; Provisional	98.72
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.7
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.67
KOG2361	264	consensus Predicted methyltransferase [General fun	98.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.65
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.65
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.64
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.64
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.64
PRK00811	283	spermidine synthase; Provisional	98.62
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.6
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.57
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.55
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.53
PRK03612	521	spermidine synthase; Provisional	98.48
COG4122	219	Predicted O-methyltransferase [General function pr	98.48
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.47
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.46
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.45
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.43
KOG2904	328	consensus Predicted methyltransferase [General fun	98.43
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.42
PRK01581	374	speE spermidine synthase; Validated	98.42
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.4
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.39
PLN02366	308	spermidine synthase	98.39
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.39
PLN02476	278	O-methyltransferase	98.36
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.34
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.34
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.33
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.33
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.33
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.31
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.29
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.28
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.27
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.26
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.26
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.22
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.21
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.2
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.19
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.19
COG2835	60	Uncharacterized conserved protein [Function unknow	98.17
PRK11827	60	hypothetical protein; Provisional	98.16
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.15
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.14
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.14
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.13
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.13
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.12
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.08
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.07
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.05
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.04
PF13679	141	Methyltransf_32: Methyltransferase domain	98.02
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.01
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.98
COG2520	341	Predicted methyltransferase [General function pred	97.98
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.95
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.94
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.93
KOG1331	293	consensus Predicted methyltransferase [General fun	97.91
KOG2899	288	consensus Predicted methyltransferase [General fun	97.88
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.87
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.87
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.85
PLN02823	336	spermine synthase	97.83
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.82
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.82
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.81
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.8
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.78
COG3897	218	Predicted methyltransferase [General function pred	97.77
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.75
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.75
KOG2730	263	consensus Methylase [General function prediction o	97.73
COG4076	252	Predicted RNA methylase [General function predicti	97.73
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.73
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.69
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.68
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.67
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.62
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.61
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.54
COG2521	287	Predicted archaeal methyltransferase [General func	97.53
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.5
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.5
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.49
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.49
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.48
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.39
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.32
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.27
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.2
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.19
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.13
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.1
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.07
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.06
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.05
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.05
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.02
PRK00536	262	speE spermidine synthase; Provisional	96.98
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.96
PRK10742	250	putative methyltransferase; Provisional	96.9
KOG3115	249	consensus Methyltransferase-like protein [General	96.79
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.76
COG0286	489	HsdM Type I restriction-modification system methyl	96.68
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.63
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.35
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.29
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.2
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.16
PHA01634	156	hypothetical protein	96.11
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.07
PRK11524	284	putative methyltransferase; Provisional	96.06
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.05
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.94
PRK13699	227	putative methylase; Provisional	95.69
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.6
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.42
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.41
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.04
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.0
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.95
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.92
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.91
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.86
COG1198	730	PriA Primosomal protein N' (replication factor Y)	94.76
PRK00420	112	hypothetical protein; Validated	93.99
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.9
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.74
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.7
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	93.42
KOG1088	124	consensus Uncharacterized conserved protein [Funct	93.23
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	93.1
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	93.08
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	92.95
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	92.34
COG1565	370	Uncharacterized conserved protein [Function unknow	92.17
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	92.09
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	92.06
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	91.96
PRK09678	72	DNA-binding transcriptional regulator; Provisional	91.92
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	91.56
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	91.4
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	91.36
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	91.31
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	91.18
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.1
PLN02668	386	indole-3-acetate carboxyl methyltransferase	90.96
PF08421	62	Methyltransf_13: Putative zinc binding domain; Int	90.85
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	90.74
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	90.42
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	90.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	90.25
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.93
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.88
TIGR00595	505	priA primosomal protein N'. All proteins in this f	89.74
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	89.6
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.55
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	89.36
COG1568	354	Predicted methyltransferases [General function pre	89.22
PHA00626	59	hypothetical protein	89.02
smart00661	52	RPOL9 RNA polymerase subunit 9.	88.72
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.71
COG1656	165	Uncharacterized conserved protein [Function unknow	88.5
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	88.49
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.43
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	88.22
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.2
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	88.04
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	87.75
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	87.75
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	86.92
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	86.6
PRK05580	679	primosome assembly protein PriA; Validated	86.17
PTZ00357	1072	methyltransferase; Provisional	86.0
PRK00432	50	30S ribosomal protein S27ae; Validated	85.89
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	85.52
COG0863	302	DNA modification methylase [DNA replication, recom	85.33
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	85.13
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.05
PRK06266	178	transcription initiation factor E subunit alpha; V	85.0
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	85.0
PRK10458	467	DNA cytosine methylase; Provisional	84.97
PRK10220	111	hypothetical protein; Provisional	84.95
KOG2920	282	consensus Predicted methyltransferase [General fun	84.86
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	84.78
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	84.77
PF14353	128	CpXC: CpXC protein	84.66
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	84.23
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	84.23
PRK14873	665	primosome assembly protein PriA; Provisional	84.19
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	84.17
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	84.17
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.14
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.1
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	84.09
PF11781	36	RRN7: RNA polymerase I-specific transcription init	83.19
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	83.16
TIGR00497	501	hsdM type I restriction system adenine methylase (	83.08
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	82.84
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	82.71
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	82.54
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	82.3
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.96
COG4798	238	Predicted methyltransferase [General function pred	81.88
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	81.74
smart00531	147	TFIIE Transcription initiation factor IIE.	81.73
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	81.59
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	81.21
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	81.12
KOG1227	351	consensus Putative methyltransferase [General func	80.82
KOG2078	495	consensus tRNA modification enzyme [RNA processing	80.75
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	80.21
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	80.14

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.92  E-value=1.3e-24  Score=192.90  Aligned_cols=184  Identities=21%  Similarity=0.258  Sum_probs=137.7

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHH
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  150 (288)
                      +|+||+|+.+|...           ...|.|.++|+++..++||+++++..........  -..+++.           -
T Consensus         2 ~~~CP~C~~~l~~~-----------~~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~-----------a   57 (272)
T PRK11088          2 SYQCPLCHQPLTLE-----------ENSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQ-----------A   57 (272)
T ss_pred             cccCCCCCcchhcC-----------CCEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHH-----------H
Confidence            48899999999653           3679999999999999999999974332221111  0011222           2


Q ss_pred             hhhhhcCCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHhcC
Q 023019          151 RQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES  225 (288)
Q Consensus       151 r~~~~~~g~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~l~~A~~~~~~~~  225 (288)
                      |+.|++.|++.+..+  .+.+.+.+. ....+|||||||+|.++..+++..+.   ..++|+|+|+.|++.|+++     
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----  131 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----  131 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence            556666777766554  233444443 34578999999999999999876542   3799999999999999876     


Q ss_pred             CCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---ceEEEEecCcccHHHHHhh
Q 023019          226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       226 g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                         ..++.+.++|+.++|+++++||+|++......+.+..++|   |.|++.++.+.++.+|++.
T Consensus       132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAPCKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             ---CCCCeEEEeecccCCCcCCceeEEEEecCCCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence               4578899999999999999999999987755555555566   9999999999999998753

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.88  E-value=1.9e-22  Score=173.25  Aligned_cols=143  Identities=27%  Similarity=0.371  Sum_probs=122.9

Q ss_pred             eeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHH
Q 023019          115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI  194 (288)
Q Consensus       115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~  194 (288)
                      +.-.+++.++.||..         |+++|++.++.|++.++               ..+...+|.+|||||||||.++..
T Consensus        13 v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~   68 (238)
T COG2226          13 VQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALL   68 (238)
T ss_pred             HHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHH
Confidence            344566777889887         89999999999999653               344444799999999999999999


Q ss_pred             HHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc------
Q 023019          195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV------  268 (288)
Q Consensus       195 l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l------  268 (288)
                      +++....++|+|+|+|++|++.|++++...+   ..++.|+++|+++|||+|++||+|++.++|++++|++++|      
T Consensus        69 ~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RV  145 (238)
T COG2226          69 LAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV  145 (238)
T ss_pred             HHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHh
Confidence            9999767899999999999999999988762   3449999999999999999999999999999999999999      


Q ss_pred             ----ceEEEEecCcccHHHH
Q 023019          269 ----GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       269 ----G~lvi~t~~~~~l~el  284 (288)
                          |++++..+.......+
T Consensus       146 lKpgG~~~vle~~~p~~~~~  165 (238)
T COG2226         146 LKPGGRLLVLEFSKPDNPVL  165 (238)
T ss_pred             hcCCeEEEEEEcCCCCchhh
Confidence                8888888877655444

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.85  E-value=2.6e-21  Score=167.35  Aligned_cols=141  Identities=23%  Similarity=0.395  Sum_probs=81.2

Q ss_pred             CeeeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHH
Q 023019          113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS  192 (288)
Q Consensus       113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~  192 (288)
                      .++.-+++..++.||..         |..++++.++.||+..+               +.+...++.+|||+|||||.++
T Consensus         7 ~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~~   62 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDVT   62 (233)
T ss_dssp             ---------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHHH
T ss_pred             HHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHHH
Confidence            44556778888999987         88999999999999543               3445566889999999999999


Q ss_pred             HHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---
Q 023019          193 RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV---  268 (288)
Q Consensus       193 ~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l---  268 (288)
                      ..+++. ++.++|+|+|+|++|++.|++++...+   ..+++++++|++++|+++++||+|++.+++++++|+.+++   
T Consensus        63 ~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~  139 (233)
T PF01209_consen   63 RELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREM  139 (233)
T ss_dssp             HHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred             HHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence            999887 556799999999999999999988762   4599999999999999999999999999999999999888   


Q ss_pred             -------ceEEEEecCccc
Q 023019          269 -------GVFFQVTLIIHV  280 (288)
Q Consensus       269 -------G~lvi~t~~~~~  280 (288)
                             |++++..+....
T Consensus       140 ~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  140 YRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             HHHEEEEEEEEEEEEEB-S
T ss_pred             HHHcCCCeEEEEeeccCCC
Confidence                   888888876543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.77  E-value=2.8e-18  Score=151.30  Aligned_cols=139  Identities=18%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             eccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 023019          118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK  197 (288)
Q Consensus       118 ~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~  197 (288)
                      .++..+..||..         +..++.+.++.|++..               .+++...++.+|||+|||+|.++..+++
T Consensus        38 ~f~~~A~~YD~~---------~~~~s~g~~~~~r~~~---------------~~~~~~~~~~~VLDlGcGtG~~~~~la~   93 (261)
T PLN02233         38 LFNRIAPVYDNL---------NDLLSLGQHRIWKRMA---------------VSWSGAKMGDRVLDLCCGSGDLAFLLSE   93 (261)
T ss_pred             HHHHhhhHHHHh---------hhhhcCChhHHHHHHH---------------HHHhCCCCCCEEEEECCcCCHHHHHHHH
Confidence            344555667654         4445556666677643               2344555688999999999999999888


Q ss_pred             h-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc--------
Q 023019          198 S-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV--------  268 (288)
Q Consensus       198 ~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l--------  268 (288)
                      . ++.++|+|+|+|++|++.|+++..........++.++++|++++|+++++||+|++.++++|++++..++        
T Consensus        94 ~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk  173 (261)
T PLN02233         94 KVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK  173 (261)
T ss_pred             HhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC
Confidence            6 4556999999999999999987542100123579999999999999999999999999999999998888        


Q ss_pred             --ceEEEEecCccc
Q 023019          269 --GVFFQVTLIIHV  280 (288)
Q Consensus       269 --G~lvi~t~~~~~  280 (288)
                        |.+++.++...+
T Consensus       174 pGG~l~i~d~~~~~  187 (261)
T PLN02233        174 PGSRVSILDFNKST  187 (261)
T ss_pred             cCcEEEEEECCCCC
Confidence              999999887644

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.72  E-value=1.7e-17  Score=140.79  Aligned_cols=139  Identities=22%  Similarity=0.242  Sum_probs=118.5

Q ss_pred             eeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHH
Q 023019          117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA  196 (288)
Q Consensus       117 ~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~  196 (288)
                      -+++..+..||.+         |+.++.+.++.|+..+               ...+.+.++.++||++||||..+..+.
T Consensus        64 ~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril  119 (296)
T KOG1540|consen   64 HVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRIL  119 (296)
T ss_pred             HHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHH
Confidence            3556667778887         8999999999998755               467888889999999999999998888


Q ss_pred             HhCCC------CEEEEEeCCHHHHHHHHHHHHhcCCC-CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc-
Q 023019          197 KSGLF------SLVVALDYSENMLKQCYEFVQQESNF-PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV-  268 (288)
Q Consensus       197 ~~~~~------~~v~gvD~s~~~l~~A~~~~~~~~g~-~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l-  268 (288)
                      +....      .+|+++|+|+.||..++++.++. +. ....+.|+++|+++|||++.+||+.++.+.|..++++++++ 
T Consensus       120 ~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~  198 (296)
T KOG1540|consen  120 RHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALR  198 (296)
T ss_pred             HhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHH
Confidence            87543      79999999999999999998654 22 22348999999999999999999999999999999999999 


Q ss_pred             ---------ceEEEEecCccc
Q 023019          269 ---------GVFFQVTLIIHV  280 (288)
Q Consensus       269 ---------G~lvi~t~~~~~  280 (288)
                               |+|.+-.|..-.
T Consensus       199 EAYRVLKpGGrf~cLeFskv~  219 (296)
T KOG1540|consen  199 EAYRVLKPGGRFSCLEFSKVE  219 (296)
T ss_pred             HHHHhcCCCcEEEEEEccccc
Confidence                     899888886544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.70  E-value=1.7e-17  Score=140.63  Aligned_cols=100  Identities=22%  Similarity=0.331  Sum_probs=89.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||-|.++..+++.|.  .|+|+|+++.+++.|+.+....    ...+++.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence            3689999999999999999999997  9999999999999999988776    456778888888887766899999999


Q ss_pred             cccccCCCccccc----------ceEEEEecCcccH
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~~~l  281 (288)
                      .||||++||+.++          |.++++|+...-.
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            9999999999877          9999999885443

>PRK05785 hypothetical protein; Provisional

Probab=99.69  E-value=5.1e-17  Score=140.28  Aligned_cols=116  Identities=30%  Similarity=0.367  Sum_probs=91.3

Q ss_pred             ccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh
Q 023019          119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS  198 (288)
Q Consensus       119 ~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~  198 (288)
                      ++..+..||..         +..++++.+..|++..+           +.+.....  ++.+|||||||||.++..+++.
T Consensus        15 f~~iA~~YD~~---------n~~~s~g~~~~wr~~~~-----------~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~   72 (226)
T PRK05785         15 YNKIPKAYDRA---------NRFISFNQDVRWRAELV-----------KTILKYCG--RPKKVLDVAAGKGELSYHFKKV   72 (226)
T ss_pred             HHhhhHHHHHh---------hhhccCCCcHHHHHHHH-----------HHHHHhcC--CCCeEEEEcCCCCHHHHHHHHh
Confidence            33445556654         55566677777887553           33333333  3679999999999999999988


Q ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc
Q 023019          199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       199 ~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      . ..+|+|+|+|++|++.|+++           ..++++|++.+|+++++||+|++.++++|++|+.+++
T Consensus        73 ~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l  130 (226)
T PRK05785         73 F-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI  130 (226)
T ss_pred             c-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence            5 34999999999999999864           1357899999999999999999999999999998888

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.68  E-value=2.2e-16  Score=136.65  Aligned_cols=112  Identities=24%  Similarity=0.316  Sum_probs=93.5

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      +...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|++++... +  ..++.++.+|+..++++++
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-G--LHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-C--CCceEEEEechhcCCCCCC
Confidence            445566667899999999999999999887 45569999999999999999998765 1  4679999999999998889


Q ss_pred             ccceEEeccccccCCCccccc----------ceEEEEecCcccHHH
Q 023019          248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~e  283 (288)
                      +||+|++..+++|++++..++          |.+++.+........
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~  159 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPG  159 (231)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence            999999999999999987766          888887765544433

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.68  E-value=3.1e-16  Score=137.46  Aligned_cols=111  Identities=28%  Similarity=0.377  Sum_probs=96.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||+|||+|.++..+.+.+.  +|+|+|+|+.|++.|+++.        ....++++|++.+|+++
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~  101 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLAT  101 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCCC
Confidence            4556666655678999999999999999988765  9999999999999999862        23468899999999999


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~  287 (288)
                      ++||+|+++.++++.+++..++          |.++++++..+++.++++.
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~  152 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA  152 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence            9999999999999999998877          9999999999999998754

>PLN02244 tocopherol O-methyltransferase

Probab=99.68  E-value=6.6e-16  Score=141.19  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             HHHHhhcCC-----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          167 ELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       167 ~~l~~~l~~-----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      +.+.+.+..     .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.+..+  ...++.++++|+.+
T Consensus       103 ~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~  179 (340)
T PLN02244        103 EESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCccc
Confidence            344455544     567899999999999999999874 3599999999999999999887651  23579999999999


Q ss_pred             CCCCCCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +|+++++||+|++..+++|++|+..++          |.|++.++.
T Consensus       180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999999999999999999999987777          999998764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.63  E-value=8.4e-16  Score=138.73  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.|+++....  ....++.++++|++++++.+++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEh
Confidence            3577999999999999999998765  9999999999999999886553  11357999999999999888999999999


Q ss_pred             cccccCCCccccc----------ceEEEEecCcc
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      ++|+|++|+..++          |.++++++...
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            9999999999888          99999987654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=1.4e-15  Score=112.26  Aligned_cols=80  Identities=30%  Similarity=0.522  Sum_probs=68.5

Q ss_pred             EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccC
Q 023019          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~  261 (288)
                      ||+|||+|..+..+++. +..+|+|+|+++.|++.++++....      ++.+..+|++++|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 3359999999999999999986543      5669999999999999999999999999999


Q ss_pred             CCccccc
Q 023019          262 SSPSTGV  268 (288)
Q Consensus       262 ~d~~~~l  268 (288)
                      +++..++
T Consensus        74 ~~~~~~l   80 (95)
T PF08241_consen   74 EDPEAAL   80 (95)
T ss_dssp             SHHHHHH
T ss_pred             cCHHHHH
Confidence            8887777

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=2.6e-15  Score=121.64  Aligned_cols=97  Identities=20%  Similarity=0.379  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~  253 (288)
                      .+.+|||+|||+|.++..++ +.++..+++|+|+|+.|++.|+++++..+   ..++.++++|+.+++  ++ +.||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence            47899999999999999999 45667899999999999999999988762   458999999999987  55 8999999


Q ss_pred             eccccccCCCccccc----------ceEEEEecC
Q 023019          254 AGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       254 ~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +..+++|+.++..++          |.+++..+.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999999999998777          888888776

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.60  E-value=3.9e-15  Score=130.92  Aligned_cols=109  Identities=15%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      +.+.+.+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+  ...++.++++|+.+++ +.
T Consensus        35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~  109 (255)
T PRK11036         35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHL  109 (255)
T ss_pred             HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhc
Confidence            34555554 3467999999999999999999876  99999999999999999987751  2357899999998764 56


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      +++||+|++..+++|+++|..++          |.+++..+..+.
T Consensus       110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~  154 (255)
T PRK11036        110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANG  154 (255)
T ss_pred             CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence            78999999999999999998777          888877666543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.59  E-value=7.7e-15  Score=129.57  Aligned_cols=113  Identities=15%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC
Q 023019          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (288)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~  239 (288)
                      ++.....+.++..+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++...     ..++.+..+|+
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~  108 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI  108 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence            3444556777788888889999999999999999887753 35999999999999999987543     25799999999


Q ss_pred             CCCCCCCCccceEEeccccccCC--Cccccc----------ceEEEEecCc
Q 023019          240 SRLPFASSSIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       240 ~~lp~~~~sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~  278 (288)
                      ...|+++++||+|++..+++|++  ++..++          |.|++..+..
T Consensus       109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            99999999999999999999986  555555          9999887744

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.59  E-value=6.5e-15  Score=129.46  Aligned_cols=100  Identities=17%  Similarity=0.145  Sum_probs=84.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+++.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++          ++.++++|+++++ ++
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~   87 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PK   87 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CC
Confidence            345666666678999999999999999999987667999999999999999763          5778999998875 56


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++||+|++..++||++++..++          |.+++..+.
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            7999999999999999988777          888887543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.57  E-value=1.2e-14  Score=111.20  Aligned_cols=96  Identities=25%  Similarity=0.301  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC-CCCCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~  255 (288)
                      |+.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++...  ....++.++++|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence            478999999999999999999655569999999999999999998443  2368999999999 33332 3569999999


Q ss_pred             c-ccccCCC---ccccc----------ceEEEEe
Q 023019          256 A-AIHCWSS---PSTGV----------GVFFQVT  275 (288)
Q Consensus       256 ~-vl~h~~d---~~~~l----------G~lvi~t  275 (288)
                      . +++++..   ..+++          |++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9 5554433   23333          8877765

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.55  E-value=3e-14  Score=129.19  Aligned_cols=108  Identities=24%  Similarity=0.324  Sum_probs=88.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ++.+..++....+.+|||||||+|.++..+++.++ ..|+|+|+|+.|+..++......  ....++.++.+|++++|+ 
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~-  186 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA-  186 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC-
Confidence            35566677666789999999999999999999876 36999999999997665432221  013579999999999998 


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +++||+|++..+++|+.++..++          |.+++.++.
T Consensus       187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~  228 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV  228 (322)
T ss_pred             cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence            78999999999999999998887          889887653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.55  E-value=4.3e-14  Score=120.13  Aligned_cols=93  Identities=11%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|+++        ..++.+.++|+.+ |+++++||+|++..
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            46789999999999999998875556999999999999999986        2456788999888 88899999999999


Q ss_pred             ccccCCC--ccccc--------ceEEEEecCc
Q 023019          257 AIHCWSS--PSTGV--------GVFFQVTLII  278 (288)
Q Consensus       257 vl~h~~d--~~~~l--------G~lvi~t~~~  278 (288)
                      +|+|++.  ...++        +.+++..+..
T Consensus       114 vL~hl~p~~~~~~l~el~r~~~~~v~i~e~~~  145 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCSNRYILIAEYYN  145 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence            9999952  12223        6677766543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.55  E-value=5e-15  Score=126.58  Aligned_cols=97  Identities=25%  Similarity=0.393  Sum_probs=80.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC-C----CEEEEEecCCCCCCCCCccceE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-E----NFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~-~----~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      |.+|||+|||+|.++..|++.|.  +|+|+|+++.|++.|+++....  ... .    ++.+.+.|++.+.   +.||+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~d--P~~~~~~~y~l~~~~~~~E~~~---~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMD--PVLEGAIAYRLEYEDTDVEGLT---GKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcC--chhccccceeeehhhcchhhcc---ccccee
Confidence            57899999999999999999997  9999999999999999994432  111 1    3556777777663   459999


Q ss_pred             EeccccccCCCccccc----------ceEEEEecCcccH
Q 023019          253 HAGAAIHCWSSPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       253 ~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l  281 (288)
                      +|..++||+.||..++          |.++++|....-+
T Consensus       163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~l  201 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTIL  201 (282)
T ss_pred             eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence            9999999999999988          9999999876443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=7.8e-14  Score=133.18  Aligned_cols=109  Identities=19%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      +.+.+.+.+...++.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|+++....    ..++.+.++|+..+++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            45667777766678899999999999999888764 359999999999999999876543    4578999999999998


Q ss_pred             CCCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++++||+|++..+++|++++..++          |.+++.++..
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            889999999999999999998887          9999887643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.54  E-value=5e-14  Score=121.86  Aligned_cols=103  Identities=25%  Similarity=0.381  Sum_probs=91.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      .+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++       ..++.++.+|+.+.++++++||+|++..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence            357899999999999999999988778999999999999998863       2367899999999998889999999999


Q ss_pred             ccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          257 AIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       257 vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +++|+.++...+          |.+++.++..+++.++.+
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~  146 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQ  146 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHH
Confidence            999999988777          999999998888877654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=8.6e-14  Score=122.46  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.++..+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++        ..++.++.+|+..+. ++
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence            455566666678899999999999999999887667999999999999999986        356789999998765 35


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      ++||+|+++.+++|++++..++          |.+++..+
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            6899999999999999987777          88877653

>TIGR00452 methyltransferase, putative

Probab=99.52  E-value=8.9e-14  Score=125.11  Aligned_cols=107  Identities=22%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+..++...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+.+++...+..  ....++.+...+++++|.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence            4566677667789999999999999999888876 47999999999998754322211  0135788888999988864 


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      .+||+|++..+++|+++|..++          |.|++.++.
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~  227 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV  227 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence            5899999999999999998888          999988753

Known examples to date are restricted to the proteobacteria.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=1.8e-13  Score=119.92  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=90.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+..++|.+|||||||.|.++.++++.. +.+|+|+++|+++.+.+++++...+  ...++++...|..++.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence            4677888899999999999999999999999996 3699999999999999999999882  2358999999988875  


Q ss_pred             CCccceEEeccccccCCC--ccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSS--PSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d--~~~~l----------G~lvi~t~~~  278 (288)
                       +.||.|++..++||+..  -..++          |++++-++..
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence             44999999999999976  33343          8888877654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.51  E-value=1.2e-13  Score=116.78  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=75.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.+...++.+|||+|||+|.++..+++++.  +|+|+|+|+.|++.+++++... +  ..++.+..+|+..++++ +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE-N--LDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCcceEEecChhhCCcC-C
Confidence            344455555678999999999999999999876  9999999999999999988775 2  34688899999888774 6


Q ss_pred             ccceEEeccccccCCC
Q 023019          248 SIDAVHAGAAIHCWSS  263 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d  263 (288)
                      +||+|++..+++|++.
T Consensus        95 ~fD~I~~~~~~~~~~~  110 (197)
T PRK11207         95 EYDFILSTVVLMFLEA  110 (197)
T ss_pred             CcCEEEEecchhhCCH
Confidence            7999999999998863

>PRK08317 hypothetical protein; Provisional

Probab=99.51  E-value=2.3e-13  Score=117.55  Aligned_cols=106  Identities=27%  Similarity=0.350  Sum_probs=90.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++....    ..++.+..+|+..++++
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence            345566666778999999999999999998875 5679999999999999999873332    46789999999998888


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      +++||+|++..+++|++++..++          |.+++..+
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            89999999999999999998877          88887764

>PRK06202 hypothetical protein; Provisional

Probab=99.49  E-value=2.1e-13  Score=118.16  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sf  249 (288)
                      ...++.+|||||||+|.++..+++.    ++..+|+|+|+|+.|++.|+++...      .++.+...+...+++.+++|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence            3345789999999999998887753    5556999999999999999987432      35667777877777778899


Q ss_pred             ceEEeccccccCCCcc--ccc--------ceEEEEecCcc
Q 023019          250 DAVHAGAAIHCWSSPS--TGV--------GVFFQVTLIIH  279 (288)
Q Consensus       250 D~V~~~~vl~h~~d~~--~~l--------G~lvi~t~~~~  279 (288)
                      |+|+++.++||+++++  .++        |.+++.++...
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~  170 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRS  170 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccC
Confidence            9999999999999864  344        77777776654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.47  E-value=1.5e-13  Score=113.52  Aligned_cols=100  Identities=16%  Similarity=0.337  Sum_probs=84.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l-p  243 (288)
                      .+.+.+++.+  +.+|||+|||.|.++..|.+. .+.+.+|+|++++.+..+.++          .+.++++|+.+ + .
T Consensus         4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~   70 (193)
T PF07021_consen    4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLAD   70 (193)
T ss_pred             HHHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhh
Confidence            3567777765  899999999999999999886 346999999999999888875          56789999984 4 4


Q ss_pred             CCCCccceEEeccccccCCCccccc------ceEEEEecCc
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV------GVFFQVTLII  278 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l------G~lvi~t~~~  278 (288)
                      |++++||.|+.+.+|+++.+|+.+|      |+-++.+|..
T Consensus        71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN  111 (193)
T PF07021_consen   71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN  111 (193)
T ss_pred             CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence            8999999999999999999999999      6555555543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.47  E-value=9.8e-13  Score=110.11  Aligned_cols=75  Identities=17%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      +.+|||||||+|..+..+++..+..+|+|+|+++.|++.|+++++.. +  ..++.++.+|+.+++. +++||+|++..
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-~--l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-G--LKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-C--CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            78999999999999999988776779999999999999999998887 2  3459999999998877 78999999975

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=6.2e-13  Score=116.42  Aligned_cols=98  Identities=13%  Similarity=0.230  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      .++.+|||||||+|..+..+++.  .++.+++|+|+|+.|++.|++++...+  ...++.++++|+.+++++  .+|+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~D~vv  130 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMVV  130 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCCC--CCCEEe
Confidence            35789999999999999888873  456799999999999999999987651  234799999999988764  499999


Q ss_pred             eccccccCCCcc--ccc----------ceEEEEecC
Q 023019          254 AGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       254 ~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      ++.++||+++.+  .++          |.|++++..
T Consensus       131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            999999997543  333          888888743

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.46  E-value=4.8e-13  Score=118.68  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=85.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      ...++.+|||||||+|..+..+++. ++..+|+|+|+++.|++.|+++.... +  ..++.++.+|++.+++++++||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-g--~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-G--YTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-C--CCCEEEEEcchhhCCCCCCceeEE
Confidence            3456899999999999988776665 55568999999999999999988765 2  358899999999999988999999


Q ss_pred             EeccccccCCCccccc----------ceEEEEecC
Q 023019          253 HAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       253 ~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +++.+++|+++...++          |+++++.+.
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            9999999999887766          899887653

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.46  E-value=1.1e-13  Score=104.38  Aligned_cols=80  Identities=29%  Similarity=0.448  Sum_probs=66.3

Q ss_pred             EEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec-c
Q 023019          181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A  256 (288)
Q Consensus       181 VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~-~  256 (288)
                      |||+|||+|..+..+.+..   +..+++|+|+|+.|++.++++....    ..+++++++|+.++++.+++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999885   3469999999999999999998765    348999999999999888999999994 5


Q ss_pred             ccccCCCc
Q 023019          257 AIHCWSSP  264 (288)
Q Consensus       257 vl~h~~d~  264 (288)
                      +++|+.+.
T Consensus        77 ~~~~~~~~   84 (101)
T PF13649_consen   77 SLHHLSPE   84 (101)
T ss_dssp             GGGGSSHH
T ss_pred             ccCCCCHH
Confidence            59998653

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.46  E-value=1.7e-13  Score=111.30  Aligned_cols=90  Identities=24%  Similarity=0.410  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.  .           .......+....+.++++||+|++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~   84 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC   84 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence            45688999999999999999988887  99999999999988  1           223344444455567889999999


Q ss_pred             ccccccCCCccccc----------ceEEEEecCcc
Q 023019          255 GAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       255 ~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      +.+|+|++|+..++          |.+++.++...
T Consensus        85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            99999999998888          99999998753

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.46  E-value=4.1e-13  Score=113.37  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.+...++.+|||+|||+|.++..+++++.  +|+|+|+|+.|++.+++++...    ..++.+..+|+...+++ +
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~   93 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN-E   93 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-C
Confidence            344555555577999999999999999999876  9999999999999999887765    23477788888766664 5


Q ss_pred             ccceEEeccccccCCC
Q 023019          248 SIDAVHAGAAIHCWSS  263 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d  263 (288)
                      +||+|++..+++|++.
T Consensus        94 ~fD~I~~~~~~~~~~~  109 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQA  109 (195)
T ss_pred             CCCEEEEecccccCCH
Confidence            7999999999999854

Part of a tellurite-reducing operon tehA and tehB

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.44  E-value=5.5e-13  Score=118.00  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=80.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+..++|.+|||||||.|.++..++++. +++|+|+.+|+++.+.++++++.. | ...++.+...|..+++. 
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-g-l~~~v~v~~~D~~~~~~-  126 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-G-LEDRVEVRLQDYRDLPG-  126 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-T-SSSTEEEEES-GGG----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-C-CCCceEEEEeeccccCC-
Confidence            4677788888899999999999999999999994 259999999999999999999987 2 34679999999988754 


Q ss_pred             CCccceEEeccccccCCCc--cccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~~  278 (288)
                        +||.|++..+++|+...  ..++          |++++-++..
T Consensus       127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence              89999999999999643  3333          8888766553

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.43  E-value=7.8e-13  Score=120.03  Aligned_cols=95  Identities=20%  Similarity=0.283  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++..+..+|+++|+|++|++.|+++...      .++.++.+|++++++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence            357799999999999998888775446999999999999999987432      46788999999999999999999999


Q ss_pred             cccccCCCccccc----------ceEEEEec
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      .+++|++++...+          |.+++...
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999988776          88877653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.43  E-value=7.1e-13  Score=113.49  Aligned_cols=103  Identities=23%  Similarity=0.346  Sum_probs=86.9

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      ...+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++.. .    ..++.+..+|+.++++++++
T Consensus        32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~~  106 (223)
T TIGR01934        32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDNS  106 (223)
T ss_pred             HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCCc
Confidence            33444446889999999999999999988764 689999999999999998865 2    35788999999998888889


Q ss_pred             cceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          249 IDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ||+|++..+++|++++..++          |.+++.++.
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99999999999999987776          888877653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.43  E-value=9.2e-13  Score=111.11  Aligned_cols=90  Identities=16%  Similarity=0.326  Sum_probs=74.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l-p  243 (288)
                      ++.+.+.+.  ++.+|||||||+|.++..+++.. ...++|+|+|+.|++.++++          ++.++++|+.+ + +
T Consensus         4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~   70 (194)
T TIGR02081         4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEA   70 (194)
T ss_pred             HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccc
Confidence            355666665  37799999999999999987664 24789999999999998752          46788899875 4 4


Q ss_pred             CCCCccceEEeccccccCCCccccc
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      +++++||+|+++.+++|++++..++
T Consensus        71 ~~~~sfD~Vi~~~~l~~~~d~~~~l   95 (194)
T TIGR02081        71 FPDKSFDYVILSQTLQATRNPEEIL   95 (194)
T ss_pred             cCCCCcCEEEEhhHhHcCcCHHHHH
Confidence            7788999999999999999998887

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.42  E-value=1.3e-12  Score=108.93  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.+++++++. +  ..++.++++|+.+++ .+++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-~--~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-G--LNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh-C--CCCeEEEecchhhcc-ccCCccEEEehh
Confidence            378999999999999999988777679999999999999999988776 2  346999999999875 367999999976


Q ss_pred             ccccCCCccccc-------ceEEEEecCcccHHHHHh
Q 023019          257 AIHCWSSPSTGV-------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       257 vl~h~~d~~~~l-------G~lvi~t~~~~~l~el~~  286 (288)
                       ++++++....+       |.+++. .......++..
T Consensus       118 -~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~  152 (181)
T TIGR00138       118 -LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEE  152 (181)
T ss_pred             -hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHH
Confidence             66555543332       666655 56666666543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.41  E-value=4.8e-13  Score=111.32  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+......+|.|+|||+|..+..++++.|.+.++|+|-|++|++.|+++        ..+..|..+|+.... +.
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~   90 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE   90 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence            456667777778899999999999999999999999999999999999999887        678899999999875 35


Q ss_pred             CccceEEeccccccCCCccccc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      ..+|+++++.+|++++|-...+
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll  112 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELL  112 (257)
T ss_pred             CccchhhhhhhhhhccccHHHH
Confidence            7899999999999999987777

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.41  E-value=3.3e-12  Score=108.69  Aligned_cols=108  Identities=17%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...+.+.+...++.+|||||||+|..+..+++.. ...+|+++|++++|++.|++++...+  ...++.++.+|+.+...
T Consensus        61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~  138 (205)
T PRK13944         61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE  138 (205)
T ss_pred             HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc
Confidence            4566677777778999999999999999988764 24599999999999999999988761  12468999999987655


Q ss_pred             CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t  275 (288)
                      ..++||+|++..+++|+++.- +.|   |++++..
T Consensus       139 ~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        139 KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            567999999999999887432 223   7776644

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.41  E-value=1.4e-12  Score=112.34  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      ++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... | ...++.++.+|+...+++ ++||+|++..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-G-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-C-CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence            3799999999999999998876679999999999999999998765 1 245789999999777664 589999999999


Q ss_pred             ccCCCccccc----------ceEEEEecC
Q 023019          259 HCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       259 ~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +|++++..++          |.+++.++.
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            9999987766          999988764

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.40  E-value=9.6e-13  Score=115.67  Aligned_cols=109  Identities=19%  Similarity=0.266  Sum_probs=85.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ++++..++..-.|.+|||||||+|+++..++.+|+ ..|+|+|++.-...+.+....-. | ....+.+.-.-++++|. 
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~l-g-~~~~~~~lplgvE~Lp~-  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFL-G-QDPPVFELPLGVEDLPN-  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHh-C-CCccEEEcCcchhhccc-
Confidence            47788888777899999999999999999999987 58999999998766644322221 0 01233444356778887 


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      .+.||+|++.+||.|..+|...|          |.+++-|..-
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi  222 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI  222 (315)
T ss_pred             cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence            78999999999999999998888          8999888754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.40  E-value=2.9e-12  Score=115.49  Aligned_cols=95  Identities=22%  Similarity=0.273  Sum_probs=74.4

Q ss_pred             HHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCCCEEEEEecCC
Q 023019          166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRADIS  240 (288)
Q Consensus       166 ~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g--~~~~~i~~~~~d~~  240 (288)
                      ++.+.+++..   .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..+.  ....++.+..+|+.
T Consensus       130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            3444555532   2578999999999999999999876  999999999999999999765310  01246788888886


Q ss_pred             CCCCCCCccceEEeccccccCCCcc
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPS  265 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~  265 (288)
                      .+   +++||+|++..+++|+++..
T Consensus       208 ~l---~~~fD~Vv~~~vL~H~p~~~  229 (315)
T PLN02585        208 SL---SGKYDTVTCLDVLIHYPQDK  229 (315)
T ss_pred             hc---CCCcCEEEEcCEEEecCHHH
Confidence            65   57899999999999998743

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.40  E-value=3.9e-12  Score=110.03  Aligned_cols=108  Identities=26%  Similarity=0.344  Sum_probs=89.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+...+...++.+|||+|||+|.++..+++.++ ..+++|+|+++.+++.+++++... + ...++.++.+|+..+++..
T Consensus        42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-G-LSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-c-cccCeEEEecccccCCCCC
Confidence            344444455678999999999999999998875 579999999999999999987653 1 2357899999999988878


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++||+|++..+++|++++...+          |.+++.++.
T Consensus       120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            8999999999999999988777          888877653

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.40  E-value=4e-12  Score=106.17  Aligned_cols=98  Identities=20%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~  251 (288)
                      .+...+++++||+|||.|+.+.+|+++|.  .|+++|+|+..++.+++.++..    ...+...+.|+....++ +.||+
T Consensus        25 a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   25 AVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             HCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TTEEE
T ss_pred             HHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CCcCE
Confidence            34444577999999999999999999998  9999999999999998887776    45699999999988775 68999


Q ss_pred             EEeccccccCCCccc--cc----------ceEEEEec
Q 023019          252 VHAGAAIHCWSSPST--GV----------GVFFQVTL  276 (288)
Q Consensus       252 V~~~~vl~h~~d~~~--~l----------G~lvi~t~  276 (288)
                      |++..|++|++.+..  .+          |.+++.++
T Consensus        98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            999999999975422  22          77777665

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.39  E-value=4.2e-12  Score=106.42  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+...+...++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++... +  ..++.++.+|+. .++ 
T Consensus        20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-~--~~~i~~~~~d~~-~~~-   94 (187)
T PRK08287         20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-G--CGNIDIIPGEAP-IEL-   94 (187)
T ss_pred             HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-C--CCCeEEEecCch-hhc-
Confidence            34455667666788999999999999999999887789999999999999999988776 2  346889988875 233 


Q ss_pred             CCccceEEeccccccCCCc----cccc---ceEEEEecCcccHHHHHh
Q 023019          246 SSSIDAVHAGAAIHCWSSP----STGV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~----~~~l---G~lvi~t~~~~~l~el~~  286 (288)
                      .++||+|++....+++.+.    .+.|   |.+++......+..++.+
T Consensus        95 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~  142 (187)
T PRK08287         95 PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALA  142 (187)
T ss_pred             CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHH
Confidence            3679999998766554332    1222   888887766666666554

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.39  E-value=4.6e-12  Score=108.35  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...+.+.+...++.+|||||||+|+++..+++.. ...+|+++|+++.+++.|+++++..+   ..++.++.+|+.....
T Consensus        65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~  141 (212)
T PRK13942         65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYE  141 (212)
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence            4566677777789999999999999999988873 44699999999999999999988762   4579999999987666


Q ss_pred             CCCccceEEeccccccCCCcc-ccc---ceEEEE
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQV  274 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~  274 (288)
                      +.+.||+|++....++++..- +.|   |++++.
T Consensus       142 ~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        142 ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            678999999998887765321 112   776664

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=2.5e-12  Score=114.97  Aligned_cols=79  Identities=23%  Similarity=0.283  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.++++++..    ..++.+...|+...++ +++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence            355999999999999999999876  9999999999999999998776    3378888899887665 67899999999


Q ss_pred             ccccCC
Q 023019          257 AIHCWS  262 (288)
Q Consensus       257 vl~h~~  262 (288)
                      +++|++
T Consensus       193 vl~~l~  198 (287)
T PRK12335        193 VLMFLN  198 (287)
T ss_pred             hhhhCC
Confidence            999986

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.38  E-value=2.9e-12  Score=108.76  Aligned_cols=107  Identities=16%  Similarity=0.084  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC-CCCC--CCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~-~~lp--~~~~sfD~V~  253 (288)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++... +  ..++.++++|+ ..++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-G--LTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-C--CCCEEEEecCHHHHHHHHcCccccceEE
Confidence            578999999999999999998877679999999999999999998775 1  36799999999 7666  7788999999


Q ss_pred             eccccccCCC--------ccccc----------ceEEEEecCcccHHHHHh
Q 023019          254 AGAAIHCWSS--------PSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       254 ~~~vl~h~~d--------~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +.+...+...        ...++          |.|++.+.......++.+
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~  167 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLE  167 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence            8765433221        11122          999999887777766654

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.38  E-value=1.6e-12  Score=107.52  Aligned_cols=108  Identities=19%  Similarity=0.273  Sum_probs=89.8

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE-EEEecCCCCC-CCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-FAS  246 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~-~~~~d~~~lp-~~~  246 (288)
                      +..++.......|||||||||....++... +..+|+++|++++|-+.|.+.+++..   ..++. |++++.+++| +++
T Consensus        68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d  143 (252)
T KOG4300|consen   68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD  143 (252)
T ss_pred             hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence            334555544556899999999988877533 34699999999999999999988762   56666 9999999998 899


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      +++|+|++..+|..+.||.+.|          |++++.....+.
T Consensus       144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            9999999999999999999998          999998877644

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.38  E-value=5.1e-12  Score=108.01  Aligned_cols=110  Identities=20%  Similarity=0.173  Sum_probs=79.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCEEEEE
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVR  236 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------g~~~~~i~~~~  236 (288)
                      +..+...+...++.+|||+|||.|..+.+|+++|.  +|+|+|+|+.+++.+.+......         -....++++++
T Consensus        23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  100 (213)
T TIGR03840        23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC  100 (213)
T ss_pred             HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence            33333333323578999999999999999999998  99999999999998654321100         00134689999


Q ss_pred             ecCCCCCCC-CCccceEEeccccccCCCcccc--c----------ceEEEEecC
Q 023019          237 ADISRLPFA-SSSIDAVHAGAAIHCWSSPSTG--V----------GVFFQVTLI  277 (288)
Q Consensus       237 ~d~~~lp~~-~~sfD~V~~~~vl~h~~d~~~~--l----------G~lvi~t~~  277 (288)
                      +|+.+++.. .+.||.|+...+++|++...+.  +          |++++.++.
T Consensus       101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            999988743 4679999999999999754432  1          777777664

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00740 methyltransferase, putative

Probab=99.38  E-value=3.1e-12  Score=111.37  Aligned_cols=97  Identities=13%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ++.+|||||||+|.++..+++..  ++.+++|+|+|+.|++.|+++++..+  ...++.++++|+..++++  .+|+|++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence            57799999999999999998863  56799999999999999999987641  135789999999998865  5899999


Q ss_pred             ccccccCCCc--cccc----------ceEEEEecC
Q 023019          255 GAAIHCWSSP--STGV----------GVFFQVTLI  277 (288)
Q Consensus       255 ~~vl~h~~d~--~~~l----------G~lvi~t~~  277 (288)
                      ..+++|+++.  ..++          |.++++...
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            9999999753  3343          888888753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.37  E-value=5e-12  Score=108.59  Aligned_cols=89  Identities=28%  Similarity=0.414  Sum_probs=73.9

Q ss_pred             HHHhhcC--CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          168 LMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       168 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+++.  ..++.+|||||||+|.++..+++.+.  +++|+|+|+.|++.|++++...+  ...++.+.++|+..++  
T Consensus        44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC--
Confidence            3444444  34588999999999999999998765  99999999999999999987651  1247999999998876  


Q ss_pred             CCccceEEeccccccCCC
Q 023019          246 SSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d  263 (288)
                       ++||+|++..+++|++.
T Consensus       118 -~~fD~ii~~~~l~~~~~  134 (219)
T TIGR02021       118 -GEFDIVVCMDVLIHYPA  134 (219)
T ss_pred             -CCcCEEEEhhHHHhCCH
Confidence             78999999999999864

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=7.3e-14  Score=104.74  Aligned_cols=84  Identities=24%  Similarity=0.333  Sum_probs=54.7

Q ss_pred             EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-C-CCCccceEEeccccc
Q 023019          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F-ASSSIDAVHAGAAIH  259 (288)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~-~~~sfD~V~~~~vl~  259 (288)
                      ||||||+|.++..+.+..+..+++|+|+|+.|++.|++++....   .........+..+.. . ..++||+|++.+++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777799999999999999999888762   233444444433332 1 125999999999999


Q ss_pred             cCCCccccc
Q 023019          260 CWSSPSTGV  268 (288)
Q Consensus       260 h~~d~~~~l  268 (288)
                      |++++..++
T Consensus        78 ~l~~~~~~l   86 (99)
T PF08242_consen   78 HLEDIEAVL   86 (99)
T ss_dssp             --S-HHHHH
T ss_pred             hhhhHHHHH
Confidence            998887766

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.37  E-value=8.7e-12  Score=96.72  Aligned_cols=107  Identities=18%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~  245 (288)
                      ..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.++++++..+   ..++.++.+|+.. ++..
T Consensus         9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence            34455566556789999999999999999998766799999999999999999887762   3478888888775 3333


Q ss_pred             CCccceEEeccccccCCC----ccccc---ceEEEEec
Q 023019          246 SSSIDAVHAGAAIHCWSS----PSTGV---GVFFQVTL  276 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d----~~~~l---G~lvi~t~  276 (288)
                      ..+||+|++....++...    ..+.|   |.+++..+
T Consensus        86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence            468999999876655321    11122   77777654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.36  E-value=8e-12  Score=107.11  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+   ..++.++.+|+.+...
T Consensus        66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCc
Confidence            45666777777899999999999999999998854 3579999999999999999998872   4679999999987654


Q ss_pred             CCCccceEEeccccccCCCc-cccc---ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSP-STGV---GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~t  275 (288)
                      ..++||+|++.....++++. .+.|   |++++..
T Consensus       143 ~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       143 PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence            55789999998888777532 2223   7777654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.35  E-value=9e-12  Score=107.52  Aligned_cols=83  Identities=25%  Similarity=0.322  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++.+.  .|+|+|+|+.|++.|++++...+  ...++.+..+|+.   ..+++||+|++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~---~~~~~fD~v~~~  134 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE---SLLGRFDTVVCL  134 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch---hccCCcCEEEEc
Confidence            4578999999999999999998876  89999999999999999887651  1247889998843   346889999999


Q ss_pred             cccccCCCcc
Q 023019          256 AAIHCWSSPS  265 (288)
Q Consensus       256 ~vl~h~~d~~  265 (288)
                      .+++|++++.
T Consensus       135 ~~l~~~~~~~  144 (230)
T PRK07580        135 DVLIHYPQED  144 (230)
T ss_pred             chhhcCCHHH
Confidence            9999987653

>PRK06922 hypothetical protein; Provisional

Probab=99.34  E-value=5.3e-12  Score=121.65  Aligned_cols=82  Identities=21%  Similarity=0.350  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~  254 (288)
                      ++.+|||||||+|.++..+++..++.+++|+|+|+.|++.|+++....    ..++.++++|+.++|  +++++||+|++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            578999999999999999998887789999999999999999886554    356888999998887  78899999999


Q ss_pred             ccccccCC
Q 023019          255 GAAIHCWS  262 (288)
Q Consensus       255 ~~vl~h~~  262 (288)
                      +.++||+.
T Consensus       494 n~vLH~L~  501 (677)
T PRK06922        494 SSILHELF  501 (677)
T ss_pred             chHHHhhh
Confidence            99999763

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.34  E-value=1.2e-11  Score=102.95  Aligned_cols=88  Identities=14%  Similarity=0.205  Sum_probs=72.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+...+...++.+|||+|||+|.++..+++.++  +|+|+|+|+.|++.+++++...    ..++.++.+|+.+.+  .+
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~   81 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG   81 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence            344445445577899999999999999999887  9999999999999999998776    346888999987654  45


Q ss_pred             ccceEEeccccccCCC
Q 023019          248 SIDAVHAGAAIHCWSS  263 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d  263 (288)
                      +||+|+++..+++.++
T Consensus        82 ~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        82 KFDVILFNPPYLPLED   97 (179)
T ss_pred             cccEEEECCCCCCCcc
Confidence            8999999988877754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.31  E-value=8.6e-12  Score=115.65  Aligned_cols=103  Identities=20%  Similarity=0.174  Sum_probs=82.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|++|++.|+++...      ..+.+..+|...+   
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence            4556667777789999999999999999998864 25999999999999999998632      2478888888765   


Q ss_pred             CCccceEEeccccccCCCc--cccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++..+++|+.+.  ..++          |.+++.++..
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            4789999999999999643  3333          8888877653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.30  E-value=4.1e-11  Score=98.46  Aligned_cols=120  Identities=18%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      +.....+..|.+.++.+++|||||+|..+..++..++..+|+++|-++++++..+++.++.+   .+++.++.+++.+.-
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~L   97 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHhh
Confidence            33456677888999999999999999999999988899999999999999999999999983   789999999998642


Q ss_pred             CCCCccceEEeccccccCCCccccc-------ceEEEEecCcccHHHHHhh
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV-------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l-------G~lvi~t~~~~~l~el~~~  287 (288)
                      -...+||.|+.... ..++..-...       |++++.....+++..+.++
T Consensus        98 ~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~  147 (187)
T COG2242          98 PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEA  147 (187)
T ss_pred             cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHH
Confidence            22238999999888 5555433333       8999988888887777655

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.29  E-value=1.5e-11  Score=101.83  Aligned_cols=99  Identities=13%  Similarity=0.164  Sum_probs=75.8

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~  251 (288)
                      .|....-.++||+|||.|.++..|+.+..  +++++|+|+..++.|+++++..     .++.|.++|+.+. .++++||+
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FDL  109 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFDL  109 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEE
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCeeE
Confidence            45655567899999999999999999976  9999999999999999998764     6899999999875 36789999


Q ss_pred             EEeccccccCCCcc---ccc----------ceEEEEecCc
Q 023019          252 VHAGAAIHCWSSPS---TGV----------GVFFQVTLII  278 (288)
Q Consensus       252 V~~~~vl~h~~d~~---~~l----------G~lvi~t~~~  278 (288)
                      |+...+++++.+.+   .++          |.++++++..
T Consensus       110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd  149 (201)
T PF05401_consen  110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD  149 (201)
T ss_dssp             EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            99999999997643   222          9999988754

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.29  E-value=2.1e-11  Score=105.59  Aligned_cols=106  Identities=20%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      +.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...    ...+.+...|+..++ ..
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence            4555555556788999999999999999988765  8999999999999999987765    246778888887765 34


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++..+++|++++..++          |.++++++..
T Consensus       112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            57899999999999999988776          8888887643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.28  E-value=5e-11  Score=101.88  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=83.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+...+...++.+|||||||+|.++..+++...  +++++|+++++++.|+++++..+   ..++.+..+|+......
T Consensus        67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  141 (212)
T PRK00312         67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA  141 (212)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc
Confidence            45666777777889999999999999998888764  89999999999999999988762   45689999998654334


Q ss_pred             CCccceEEeccccccCCCccc-cc---ceEEEEec
Q 023019          246 SSSIDAVHAGAAIHCWSSPST-GV---GVFFQVTL  276 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~t~  276 (288)
                      .++||+|++...+++++.... .|   |.+++...
T Consensus       142 ~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        142 YAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence            578999999988887753221 12   77777665

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=1.5e-11  Score=103.80  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD~V~  253 (288)
                      ...+|||||||+|.++..+++..+...++|+|+++.|++.|++++... +  ..++.++++|+.+++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-~--l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-G--LKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-C--CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            356899999999999999999988889999999999999999988776 2  358999999998653   4567899999


Q ss_pred             eccccccCCCc--------cccc----------ceEEEEecCcccHHHHHh
Q 023019          254 AGAAIHCWSSP--------STGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       254 ~~~vl~h~~d~--------~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ++....+....        ..++          |.|++.+.......++.+
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~  143 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLK  143 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            87654332211        1122          999998887776665544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.27  E-value=2.2e-11  Score=116.39  Aligned_cols=102  Identities=23%  Similarity=0.330  Sum_probs=82.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC--CCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~--~lp~  244 (288)
                      ..+...+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++....     ..++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence            4455666655678999999999999999999875  999999999999988764221     367899999996  4678


Q ss_pred             CCCccceEEeccccccCCCc--cccc----------ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t  275 (288)
                      ++++||+|++..+++|+++.  ..++          |.+++..
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            88999999999999999874  3343          8887764

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=7.1e-11  Score=99.10  Aligned_cols=106  Identities=18%  Similarity=0.131  Sum_probs=89.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...++.+.+.+.++.+|||||||+|+.+..+++...  +|+.+|..+...+.|+++++..+   ..++.++++|...---
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~  134 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWP  134 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCC
Confidence            356788889999999999999999999999999876  99999999999999999999883   5679999999986544


Q ss_pred             CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t  275 (288)
                      +.+.||.|+.......+|+.. +.|   |++++-.
T Consensus       135 ~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         135 EEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEE
Confidence            568999999999998887632 222   7766654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.26  E-value=1.5e-11  Score=102.65  Aligned_cols=87  Identities=30%  Similarity=0.394  Sum_probs=69.2

Q ss_pred             HHHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC-CCC
Q 023019          167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLP  243 (288)
Q Consensus       167 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~-~lp  243 (288)
                      +...+.+...  ....|||||||+|..+..+.+.|.  ..+|+|+|+.|++.|.++-        ..-+++.+|.- -+|
T Consensus        38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~Glp  107 (270)
T KOG1541|consen   38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLP  107 (270)
T ss_pred             HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCC
Confidence            3344444433  367899999999999999999987  8999999999999999741        12356777764 689


Q ss_pred             CCCCccceEEeccccccCCC
Q 023019          244 FASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d  263 (288)
                      |..++||.|++..+++++-+
T Consensus       108 frpGtFDg~ISISAvQWLcn  127 (270)
T KOG1541|consen  108 FRPGTFDGVISISAVQWLCN  127 (270)
T ss_pred             CCCCccceEEEeeeeeeecc
Confidence            99999999999988887644

>PRK14968 putative methyltransferase; Provisional

Probab=99.26  E-value=7.8e-11  Score=98.28  Aligned_cols=97  Identities=19%  Similarity=0.293  Sum_probs=73.2

Q ss_pred             CCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023019          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (288)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d  238 (288)
                      .+.|..+...+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.+++++... +....++.++.+|
T Consensus         5 ~~~p~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d   81 (188)
T PRK14968          5 VYEPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSD   81 (188)
T ss_pred             ccCcchhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecc
Confidence            34444444556666655668899999999999999999885  49999999999999999998766 2111228888998


Q ss_pred             CCCCCCCCCccceEEeccccc
Q 023019          239 ISRLPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       239 ~~~lp~~~~sfD~V~~~~vl~  259 (288)
                      +.+ ++.+++||+|+++..+.
T Consensus        82 ~~~-~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         82 LFE-PFRGDKFDVILFNPPYL  101 (188)
T ss_pred             ccc-cccccCceEEEECCCcC
Confidence            865 34455899999876543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.25  E-value=2.7e-11  Score=106.94  Aligned_cols=100  Identities=15%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHhc---CCC----------------
Q 023019          176 VLGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQE---SNF----------------  227 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~l~~A~~~~~~~---~g~----------------  227 (288)
                      .++.+|||+|||+|.    ++..+++.++     ..+|+|+|+|+.|++.|++.+-..   .+.                
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    4555555432     468999999999999999853100   000                


Q ss_pred             -----CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCcc--ccc----------ceEEEEe
Q 023019          228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVT  275 (288)
Q Consensus       228 -----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t  275 (288)
                           ...++.|.++|+.+.+++.++||+|+|.++++|++++.  +++          |.++++.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                 01368999999999887789999999999999997654  344          7777654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.25  E-value=1.1e-10  Score=98.70  Aligned_cols=115  Identities=17%  Similarity=0.228  Sum_probs=84.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~  244 (288)
                      ......+...++.+|||+|||+|.++..+++. ++..+|+++|+++.|++.+++++... + ...++.++.+|+.+. +.
T Consensus        30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g-~~~~v~~~~~d~~~~l~~  107 (198)
T PRK00377         30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-G-VLNNIVLIKGEAPEILFT  107 (198)
T ss_pred             HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-C-CCCCeEEEEechhhhHhh
Confidence            34456677778999999999999999988775 44569999999999999999998876 2 135788999998763 33


Q ss_pred             CCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ..+.||.|++....   .++...+          |++++.....+++.++.+
T Consensus       108 ~~~~~D~V~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~  156 (198)
T PRK00377        108 INEKFDRIFIGGGS---EKLKEIISASWEIIKKGGRIVIDAILLETVNNALS  156 (198)
T ss_pred             cCCCCCEEEECCCc---ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHH
Confidence            34689999985432   2222223          888887776666666544

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.25  E-value=5.7e-11  Score=102.11  Aligned_cols=97  Identities=22%  Similarity=0.335  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~  255 (288)
                      .+.+|||+|||+|.++..+++.+.  .++|+|+++.+++.+++++...+   ..++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            477999999999999999988776  79999999999999999887651   22688899998877654 3789999999


Q ss_pred             cccccCCCccccc----------ceEEEEecCc
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++++|+.++..++          |.+++++...
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999999998776          8888877643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.25  E-value=3.9e-11  Score=102.04  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...+.+.+...++.+|||||||+|+++..++.. ++...|+++|..+..++.|+++++..+   ..++.++.+|.....-
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccc
Confidence            467788888889999999999999999999987 454589999999999999999999872   5689999999876444


Q ss_pred             CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t  275 (288)
                      ..+.||.|++......+|..- +.|   |++++-.
T Consensus       138 ~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             GG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEE
T ss_pred             cCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEE
Confidence            567899999999988775331 122   6666543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.24  E-value=7.3e-11  Score=101.25  Aligned_cols=90  Identities=21%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCEEEEEecCCCCC
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLP  243 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------g~~~~~i~~~~~d~~~lp  243 (288)
                      +...++.+|||+|||.|..+.+|+++|.  +|+|+|+|+.+++.+.+......         .....++++.++|+.+++
T Consensus        33 ~~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         33 LALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             hCCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence            3344578999999999999999999998  99999999999998753211100         001357899999999886


Q ss_pred             CCC-CccceEEeccccccCCCc
Q 023019          244 FAS-SSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       244 ~~~-~sfD~V~~~~vl~h~~d~  264 (288)
                      ..+ +.||.|+...+++|++..
T Consensus       111 ~~~~~~fd~v~D~~~~~~l~~~  132 (218)
T PRK13255        111 AADLADVDAVYDRAALIALPEE  132 (218)
T ss_pred             cccCCCeeEEEehHhHhhCCHH
Confidence            433 689999999999999643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.23  E-value=9.8e-11  Score=103.90  Aligned_cols=97  Identities=9%  Similarity=0.051  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCccchHHHH--HHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~--l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ++.+|+|||||.|.++..  ++...++++++|+|+++.+++.|++.+... .....++.|..+|+.+.+-..+.||+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEE
Confidence            678999999998855433  334567789999999999999999998542 12346799999999886534578999999


Q ss_pred             ccccccC--CCccccc----------ceEEEEe
Q 023019          255 GAAIHCW--SSPSTGV----------GVFFQVT  275 (288)
Q Consensus       255 ~~vl~h~--~d~~~~l----------G~lvi~t  275 (288)
                      . +++++  +++.+++          |.+++..
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9 98888  5666666          6666665

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.22  E-value=7.4e-11  Score=105.56  Aligned_cols=106  Identities=17%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++..+++.+. .+|+|+|+++.|++.|++++... + ....+.+..++..  +..+++||+|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~-~~~~~~~~~~~~~--~~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-Q-VSDRLQVKLIYLE--QPIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-C-CCcceEEEecccc--cccCCCceEEEEec
Confidence            478999999999999998888764 58999999999999999998876 1 2334566666533  33467899999987


Q ss_pred             ccccCCC----ccccc---ceEEEEecCcccHHHHHhh
Q 023019          257 AIHCWSS----PSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       257 vl~h~~d----~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      ..+++..    ..+.+   |.++++.+......++.+.
T Consensus       234 ~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~  271 (288)
T TIGR00406       234 LAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDA  271 (288)
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHH
Confidence            6554322    22223   9999999988888877664

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.21  E-value=1.6e-10  Score=93.85  Aligned_cols=108  Identities=21%  Similarity=0.332  Sum_probs=83.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      ..+|||+|||+|.++..|++.+.....+|+|+|+.+++.|+..++..+  ....|.|.+.|+....+..+.||+|+--.+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT  145 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGT  145 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCc
Confidence            449999999999999999999887789999999999999998887762  234499999999988888899999998776


Q ss_pred             cccCC----Ccccc-----------c--ceEEEEecCcccHHHHHhh
Q 023019          258 IHCWS----SPSTG-----------V--GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       258 l~h~~----d~~~~-----------l--G~lvi~t~~~~~l~el~~~  287 (288)
                      +.-+.    .+..-           |  |.+++.|....+..||-+.
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~  192 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE  192 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence            65432    11111           1  5555556566677776554

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.20  E-value=2.2e-10  Score=94.64  Aligned_cols=92  Identities=25%  Similarity=0.375  Sum_probs=72.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||+|||+|.++..+++.++..+|+++|+++.+++.++++++..+   ..++.++..|+.+.. ++
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~~~~~-~~   96 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDLFEAL-PD   96 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESSTTTTC-CT
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---ccccccccccccccc-cc
Confidence            44555555446789999999999999999999987789999999999999999998872   233999999987532 37


Q ss_pred             CccceEEeccccccCC
Q 023019          247 SSIDAVHAGAAIHCWS  262 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~  262 (288)
                      ++||+|+++--++.-.
T Consensus        97 ~~fD~Iv~NPP~~~~~  112 (170)
T PF05175_consen   97 GKFDLIVSNPPFHAGG  112 (170)
T ss_dssp             TCEEEEEE---SBTTS
T ss_pred             cceeEEEEccchhccc
Confidence            8999999987655443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.20  E-value=2.9e-10  Score=104.75  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+++....+.+|||+|||+|.++..+++++|..+|+++|+|+.|++.|+++++..+.....++.++..|+... ++
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            46677777765567999999999999999999988889999999999999999998765110123678888887542 24


Q ss_pred             CCccceEEecccccc
Q 023019          246 SSSIDAVHAGAAIHC  260 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h  260 (288)
                      .++||+|+++-.+|.
T Consensus       296 ~~~fDlIlsNPPfh~  310 (378)
T PRK15001        296 PFRFNAVLCNPPFHQ  310 (378)
T ss_pred             CCCEEEEEECcCccc
Confidence            568999999866654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.20  E-value=1.6e-10  Score=106.11  Aligned_cols=114  Identities=16%  Similarity=0.150  Sum_probs=86.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~  244 (288)
                      +.+...+....+..+||||||+|.++..+++..|...++|+|+++.|++.|.+++...+   ..++.++++|+..+  .+
T Consensus       112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~  188 (390)
T PRK14121        112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELL  188 (390)
T ss_pred             HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhC
Confidence            44555555556779999999999999999999888899999999999999999987762   46899999999764  57


Q ss_pred             CCCccceEEeccccccCCCc------cccc----------ceEEEEecCcccHHH
Q 023019          245 ASSSIDAVHAGAAIHCWSSP------STGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~------~~~l----------G~lvi~t~~~~~l~e  283 (288)
                      +++++|.|++.+...|....      ..++          |.+.+.|-.......
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~  243 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF  243 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence            78999999985433222111      1222          999998866554433

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.20  E-value=1.4e-10  Score=95.66  Aligned_cols=85  Identities=11%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++++.  +++++|+++.|++.+++++..     ..++.++.+|+.++++++
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence            3456666666788999999999999999999854  999999999999999988644     257999999999998877


Q ss_pred             CccceEEecccc
Q 023019          247 SSIDAVHAGAAI  258 (288)
Q Consensus       247 ~sfD~V~~~~vl  258 (288)
                      ..||.|+++--+
T Consensus        76 ~~~d~vi~n~Py   87 (169)
T smart00650       76 LQPYKVVGNLPY   87 (169)
T ss_pred             cCCCEEEECCCc
Confidence            789999987544

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.19  E-value=1.8e-10  Score=97.30  Aligned_cols=113  Identities=12%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~  245 (288)
                      ..+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.|++.++++++.. +  ..++.++.+|+.+ ++..
T Consensus        30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-~--~~~v~~~~~d~~~~~~~~  106 (196)
T PRK07402         30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-G--VKNVEVIEGSAPECLAQL  106 (196)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCCeEEEECchHHHHhhC
Confidence            4566777777789999999999999999987766679999999999999999998776 2  3578999999864 2222


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ...+|.++....    .+...++          |.+++.+...+++.++.+
T Consensus       107 ~~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~  153 (196)
T PRK07402        107 APAPDRVCIEGG----RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISE  153 (196)
T ss_pred             CCCCCEEEEECC----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHH
Confidence            234677665321    1112222          899999887766665543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.18  E-value=2.3e-10  Score=97.68  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  246 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~  246 (288)
                      .++.+|||||||+|.++..+++.. +...|+|+|+++ |.             ...++.++++|+.+.+        +.+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence            558899999999999999998874 446999999998 21             1346889999999853        667


Q ss_pred             CccceEEeccccccCCCcc-----------ccc----------ceEEEEecCcccHHHHH
Q 023019          247 SSIDAVHAGAAIHCWSSPS-----------TGV----------GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~-----------~~l----------G~lvi~t~~~~~l~el~  285 (288)
                      ++||+|++..+.++..++.           .++          |.|++.++..+.+.++.
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l  175 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL  175 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence            8999999987776654431           222          99999999888765554

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.17  E-value=3.1e-10  Score=102.41  Aligned_cols=105  Identities=15%  Similarity=0.067  Sum_probs=85.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..++++.|..+++++|. +.+++.+++++... | ...++.++.+|+.+.+++ 
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-g-l~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-G-VADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-C-ccceEEEEecCccCCCCC-
Confidence            4455555666678999999999999999999998889999998 78999999988776 2 246799999999876654 


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEec
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTL  276 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~  276 (288)
                       .+|+|++..++|++.+..  ..+          |++++..+
T Consensus       215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             369999999999987643  233          99998875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.17  E-value=8.1e-11  Score=104.92  Aligned_cols=114  Identities=20%  Similarity=0.319  Sum_probs=82.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.++..  ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..+ |. ..++.+.  ...+.  .
T Consensus       152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~-~~~~~v~--~~~~~--~  222 (295)
T PF06325_consen  152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GV-EDRIEVS--LSEDL--V  222 (295)
T ss_dssp             HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T--TTCEEES--CTSCT--C
T ss_pred             HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CC-CeeEEEE--Eeccc--c
Confidence            455555544  478999999999999999999987 58999999999999999999887 22 3344432  22222  3


Q ss_pred             CCccceEEecccccc----CCCccccc---ceEEEEecCcccHHHHHhhC
Q 023019          246 SSSIDAVHAGAAIHC----WSSPSTGV---GVFFQVTLIIHVVEDLAVSF  288 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h----~~d~~~~l---G~lvi~t~~~~~l~el~~~~  288 (288)
                      .+.||+|+++-...-    .++....+   |.++++.+......++.++|
T Consensus       223 ~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~  272 (295)
T PF06325_consen  223 EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY  272 (295)
T ss_dssp             CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence            489999999764432    23444444   99999999998888887653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.17  E-value=3e-10  Score=102.66  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=82.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ..+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.|++.|+++++.. |  ..++.++.+|+...+..
T Consensus        70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-g--~~nV~~i~gD~~~~~~~  146 (322)
T PRK13943         70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-G--IENVIFVCGDGYYGVPE  146 (322)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCChhhcccc
Confidence            4555666666789999999999999999988753 247999999999999999998876 2  45789999998876655


Q ss_pred             CCccceEEeccccccCCCc-cccc---ceEEEE
Q 023019          246 SSSIDAVHAGAAIHCWSSP-STGV---GVFFQV  274 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~  274 (288)
                      .++||+|++...+.++++. .+.+   |++++.
T Consensus       147 ~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        147 FAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            6789999998888777543 2222   777664

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.16  E-value=5.2e-10  Score=102.17  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.|++.|+++++..    .....++.+|....  .+
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~~  259 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--IK  259 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--cC
Confidence            4556666554566899999999999999999987779999999999999999998876    23456777777542  25


Q ss_pred             CccceEEeccccccCCCc-----cccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSP-----STGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~-----~~~l----------G~lvi~t~~  277 (288)
                      +.||+|+++-.+|+..+.     ..++          |.+++....
T Consensus       260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            789999999888864322     2222          888777644

>TIGR03438 probable methyltransferase

Probab=99.15  E-value=5.4e-10  Score=100.63  Aligned_cols=109  Identities=16%  Similarity=0.218  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCC----ccc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID  250 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~----sfD  250 (288)
                      ++.+|||+|||+|..+..+.+... ..+|+|+|+|+.|++.|++++...  .+..++.++++|+.+ +++...    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence            467899999999999999998853 358999999999999999998764  123567788999876 344332    234


Q ss_pred             eEEeccccccCCCcc--ccc----------ceEEEEecCcccHHHHHhh
Q 023019          251 AVHAGAAIHCWSSPS--TGV----------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       251 ~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~~~~l~el~~~  287 (288)
                      ++++...++|++..+  .++          |.|++..-.......+..+
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a  189 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA  189 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence            555567788886432  223          8888887766666655544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.13  E-value=2.9e-10  Score=99.75  Aligned_cols=101  Identities=18%  Similarity=0.268  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++... +. ...+.+..+        +.+||+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~-~~~~~~~~~--------~~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GV-ELNVYLPQG--------DLKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CC-CceEEEccC--------CCCcCEEEEc
Confidence            3588999999999999998888776 36999999999999999998776 21 122333222        2279999987


Q ss_pred             cccccCC----Cccccc---ceEEEEecCcccHHHHHhh
Q 023019          256 AAIHCWS----SPSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       256 ~vl~h~~----d~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      ...+.+.    ...+.|   |.++++.+......++.+.
T Consensus       187 i~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~  225 (250)
T PRK00517        187 ILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEA  225 (250)
T ss_pred             CcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHH
Confidence            6544332    222333   9999998887777766553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.12  E-value=1.6e-11  Score=103.07  Aligned_cols=108  Identities=22%  Similarity=0.237  Sum_probs=82.5

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023019          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (288)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~  237 (288)
                      +|..|....++| ..+...+-.++||+|||||..+..+.....  +++|+|+|++|++.|.++        ...-.+.++
T Consensus       107 ~Y~vP~~l~emI-~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~~A  175 (287)
T COG4976         107 GYSVPELLAEMI-GKADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLYVA  175 (287)
T ss_pred             cCccHHHHHHHH-HhccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHHHH
Confidence            455555544444 344444567899999999999999998876  999999999999999987        233345666


Q ss_pred             cCCC-CC-CCCCccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          238 DISR-LP-FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       238 d~~~-lp-~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      ++.. ++ ..+..||+|++..|+.++.+.+.++          |.|.++.=
T Consensus       176 ea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         176 EAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             HHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence            6653 22 4567899999999999999988887          78887763

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.12  E-value=2.4e-10  Score=87.96  Aligned_cols=80  Identities=18%  Similarity=0.343  Sum_probs=67.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~  255 (288)
                      |.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.|+.++...+  ...++.++++|+.+..  +.+++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            4689999999999999999998 4699999999999999999988762  2467999999998765  778999999998


Q ss_pred             ccccc
Q 023019          256 AAIHC  260 (288)
Q Consensus       256 ~vl~h  260 (288)
                      --+..
T Consensus        78 pP~~~   82 (117)
T PF13659_consen   78 PPYGP   82 (117)
T ss_dssp             -STTS
T ss_pred             CCCcc
Confidence            76653

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.12  E-value=5.8e-10  Score=96.11  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ...++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++...    ..++.++.+|+... +++++||+|+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi  106 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV  106 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence            345678999999999999999988753 59999999999999999998776    24688889998763 4567899999


Q ss_pred             ecc
Q 023019          254 AGA  256 (288)
Q Consensus       254 ~~~  256 (288)
                      ++-
T Consensus       107 ~np  109 (223)
T PRK14967        107 SNP  109 (223)
T ss_pred             ECC
Confidence            974

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.09  E-value=2e-09  Score=98.12  Aligned_cols=114  Identities=23%  Similarity=0.290  Sum_probs=85.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.......++.+|||+|||+|.++..++..+.  .++|+|+++.|++.|+++++.. |  ..++.+..+|+.++|+.+
T Consensus       172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~-g--~~~i~~~~~D~~~l~~~~  246 (329)
T TIGR01177       172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY-G--IEDFFVKRGDATKLPLSS  246 (329)
T ss_pred             HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh-C--CCCCeEEecchhcCCccc
Confidence            4444555566788999999999999988877765  9999999999999999999877 2  334889999999999888


Q ss_pred             CccceEEecccccc---C--C---C-ccccc----------ceEEEEecCcccHHHHH
Q 023019          247 SSIDAVHAGAAIHC---W--S---S-PSTGV----------GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       247 ~sfD~V~~~~vl~h---~--~---d-~~~~l----------G~lvi~t~~~~~l~el~  285 (288)
                      ++||+|+++--...   .  .   + ...++          |.+++..+....+.++.
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~  304 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA  304 (329)
T ss_pred             CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence            89999999632110   0  0   0 11222          88888887766665553

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4.5e-10  Score=99.45  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=83.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+++.  ++.+|||+|||+|.++...++.|. ..++|+|+++..++.|++++..++ .. ..+.....+....+ .
T Consensus       153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~-v~-~~~~~~~~~~~~~~-~  226 (300)
T COG2264         153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG-VE-LLVQAKGFLLLEVP-E  226 (300)
T ss_pred             HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcC-Cc-hhhhcccccchhhc-c
Confidence            555655555  489999999999999999999987 579999999999999999998872 11 11222222222222 2


Q ss_pred             CCccceEEeccccc----cCCCccccc---ceEEEEecCcccHHHHHhhC
Q 023019          246 SSSIDAVHAGAAIH----CWSSPSTGV---GVFFQVTLIIHVVEDLAVSF  288 (288)
Q Consensus       246 ~~sfD~V~~~~vl~----h~~d~~~~l---G~lvi~t~~~~~l~el~~~~  288 (288)
                      .+.||+|+++-.-+    -.++....+   |.++++....+....+.++|
T Consensus       227 ~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~  276 (300)
T COG2264         227 NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAY  276 (300)
T ss_pred             cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHH
Confidence            36999999976322    123344444   99999999888877776653

>PHA03411 putative methyltransferase; Provisional

Probab=99.07  E-value=9.4e-10  Score=96.39  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~  236 (288)
                      +.|++|......+.  +....+.+|||+|||+|.++..++++.+..+|+|+|+++.|++.++++        ..++.+++
T Consensus        46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~  115 (279)
T PHA03411         46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWIT  115 (279)
T ss_pred             eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEE
Confidence            34667776654432  223346799999999999998888765446999999999999999986        34688999


Q ss_pred             ecCCCCCCCCCccceEEeccccccCC
Q 023019          237 ADISRLPFASSSIDAVHAGAAIHCWS  262 (288)
Q Consensus       237 ~d~~~lp~~~~sfD~V~~~~vl~h~~  262 (288)
                      +|+.++.. +.+||+|+++-.+.|.+
T Consensus       116 ~D~~e~~~-~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        116 SDVFEFES-NEKFDVVISNPPFGKIN  140 (279)
T ss_pred             Cchhhhcc-cCCCcEEEEcCCccccC
Confidence            99987753 46899999988888754

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.04  E-value=1.6e-09  Score=100.35  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~  255 (288)
                      ++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++++..    ..++.++++|+.+..+ ..++||+|+++
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCCCccEEEEC
Confidence            456999999999999999988776679999999999999999998876    3479999999865433 24689999996


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       327 P  327 (423)
T PRK14966        327 P  327 (423)
T ss_pred             C
Confidence            4

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.04  E-value=2.8e-09  Score=91.49  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc------C---CCCCCCEEEEEecCCCCC
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S---NFPKENFLLVRADISRLP  243 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~------~---g~~~~~i~~~~~d~~~lp  243 (288)
                      +...++.+||+.|||.|..+.+|+++|.  +|+|+|+|+..++.+.+.....      +   -....+++++++|+.+++
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3444578999999999999999999998  8999999999999986632100      0   001357899999999986


Q ss_pred             CC---CCccceEEeccccccCCCccccc------------ceEEEEecC
Q 023019          244 FA---SSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLI  277 (288)
Q Consensus       244 ~~---~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~  277 (288)
                      ..   .+.||+|+-...|++++...+.-            |.+++.++.
T Consensus       117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            42   26899999999999997543321            777777663

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.03  E-value=1.5e-09  Score=96.44  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=69.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++.      ..++.++++|+..+++
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~~  101 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVDL  101 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCCH
Confidence            346667777777788999999999999999999986  99999999999999998642      2579999999999876


Q ss_pred             CCCccceEEecc
Q 023019          245 ASSSIDAVHAGA  256 (288)
Q Consensus       245 ~~~sfD~V~~~~  256 (288)
                      ++-.+|.|+++-
T Consensus       102 ~~~~~~~vv~Nl  113 (272)
T PRK00274        102 SELQPLKVVANL  113 (272)
T ss_pred             HHcCcceEEEeC
Confidence            543357777764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.03  E-value=2.3e-09  Score=94.50  Aligned_cols=84  Identities=13%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..     ..++.++.+|+.+++++
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~   90 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP   90 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch
Confidence            45666777766789999999999999999999865  999999999999999988643     25799999999988765


Q ss_pred             CCccceEEecccc
Q 023019          246 SSSIDAVHAGAAI  258 (288)
Q Consensus       246 ~~sfD~V~~~~vl  258 (288)
                        .||.|+++.-.
T Consensus        91 --~~d~Vv~NlPy  101 (258)
T PRK14896         91 --EFNKVVSNLPY  101 (258)
T ss_pred             --hceEEEEcCCc
Confidence              48999887543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.02  E-value=1e-09  Score=94.78  Aligned_cols=91  Identities=18%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~  244 (288)
                      -++..+.......+|||+|||+|..+..++++...++++|||+.+.|++.|+++++..  ....++.++++|+.++.  .
T Consensus        34 iLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhcc
Confidence            3455666655688999999999999999999966689999999999999999999884  45789999999998764  3


Q ss_pred             CCCccceEEeccccc
Q 023019          245 ASSSIDAVHAGAAIH  259 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~  259 (288)
                      ...+||+|+|+=-..
T Consensus       112 ~~~~fD~Ii~NPPyf  126 (248)
T COG4123         112 VFASFDLIICNPPYF  126 (248)
T ss_pred             cccccCEEEeCCCCC
Confidence            345799999975443

>PRK04266 fibrillarin; Provisional

Probab=99.02  E-value=1.8e-09  Score=93.07  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCC
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS  247 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~  247 (288)
                      .+...++.+|||+|||+|.++..+++..+.++|+|+|+++.|++.+.++++..     .++.++.+|+...    ++ ..
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence            46777899999999999999999998754468999999999999888776543     5788899998752    22 25


Q ss_pred             ccceEEec
Q 023019          248 SIDAVHAG  255 (288)
Q Consensus       248 sfD~V~~~  255 (288)
                      +||+|++.
T Consensus       141 ~~D~i~~d  148 (226)
T PRK04266        141 KVDVIYQD  148 (226)
T ss_pred             cCCEEEEC
Confidence            69999854

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.02  E-value=2.5e-09  Score=95.47  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... + ...++.++.+|+.+ ++++++||+|+++
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~-~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-G-LEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C-CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            3457899999999999999999877779999999999999999998876 2 22578999999854 2345689999996

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.00  E-value=4.1e-09  Score=91.99  Aligned_cols=85  Identities=21%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++++... +  ..++.++.+|+.+ ++++
T Consensus        78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~-~~~~  152 (251)
T TIGR03534        78 EAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-G--LDNVTFLQSDWFE-PLPG  152 (251)
T ss_pred             HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhc-cCcC
Confidence            344444442 356899999999999999999877679999999999999999998776 2  3469999999876 4567


Q ss_pred             CccceEEecc
Q 023019          247 SSIDAVHAGA  256 (288)
Q Consensus       247 ~sfD~V~~~~  256 (288)
                      ++||+|+++-
T Consensus       153 ~~fD~Vi~np  162 (251)
T TIGR03534       153 GKFDLIVSNP  162 (251)
T ss_pred             CceeEEEECC
Confidence            8999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PHA03412 putative methyltransferase; Provisional

Probab=98.99  E-value=3e-09  Score=91.22  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL  233 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~  233 (288)
                      +.|++|......+....  ..+.+|||+|||+|.++..++++.   ...+|+++|+++.+++.|+++        ..++.
T Consensus        31 GqFfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~  100 (241)
T PHA03412         31 GAFFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEAT  100 (241)
T ss_pred             CccCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCE
Confidence            45777877655554222  236799999999999999988752   235899999999999999986        34578


Q ss_pred             EEEecCCCCCCCCCccceEEeccccc
Q 023019          234 LVRADISRLPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       234 ~~~~d~~~lp~~~~sfD~V~~~~vl~  259 (288)
                      ++.+|+...++ +++||+|+++=-+.
T Consensus       101 ~~~~D~~~~~~-~~~FDlIIsNPPY~  125 (241)
T PHA03412        101 WINADALTTEF-DTLFDMAISNPPFG  125 (241)
T ss_pred             EEEcchhcccc-cCCccEEEECCCCC
Confidence            99999987665 56899999975444

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=5.2e-09  Score=85.97  Aligned_cols=75  Identities=23%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ..-.+..|+|+|||||.++...+-.|+ .+|+|+|+++++++.++++..+.    ..++.++++|+.+..   +.+|.|+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence            344578899999999999999999887 69999999999999999998875    578999999999874   5688888


Q ss_pred             ecc
Q 023019          254 AGA  256 (288)
Q Consensus       254 ~~~  256 (288)
                      ++=
T Consensus       114 mNP  116 (198)
T COG2263         114 MNP  116 (198)
T ss_pred             ECC
Confidence            864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.98  E-value=2.7e-09  Score=101.11  Aligned_cols=85  Identities=24%  Similarity=0.389  Sum_probs=70.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----  241 (288)
                      .+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++.. +  ..++.++++|+.+    
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~~~~~d~~~~l~~  360 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN-G--LDNVTFYHANLEEDFTD  360 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEeChHHhhhh
Confidence            45566666666788999999999999999998875  9999999999999999998876 2  3579999999864    


Q ss_pred             CCCCCCccceEEec
Q 023019          242 LPFASSSIDAVHAG  255 (288)
Q Consensus       242 lp~~~~sfD~V~~~  255 (288)
                      +++.+++||+|++.
T Consensus       361 ~~~~~~~fD~Vi~d  374 (443)
T PRK13168        361 QPWALGGFDKVLLD  374 (443)
T ss_pred             hhhhcCCCCEEEEC
Confidence            23556789999984

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.97  E-value=5.7e-09  Score=93.25  Aligned_cols=74  Identities=22%  Similarity=0.287  Sum_probs=62.9

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++...+  ...++.++++|+.+ +++..+||+|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~-~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE-PLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc-cCcCCCccEEEEC
Confidence            68999999999999999998877799999999999999999988762  12359999999875 3444589999996

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1e-08  Score=90.48  Aligned_cols=108  Identities=19%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      -+.+++.+....+.+|||+|||.|.++..+++..|..+++-+|+|..+++.|++++..++   ..+..++..|..+ +..
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v~  222 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PVE  222 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-ccc
Confidence            578888888777779999999999999999999999999999999999999999998872   2333556666543 333


Q ss_pred             CCccceEEeccccccCCCccc----cc-----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPST----GV-----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~----~l-----------G~lvi~t~~~  278 (288)
                      + +||+|+++=-||--.+...    .+           |.|.+..-..
T Consensus       223 ~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~  269 (300)
T COG2813         223 G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH  269 (300)
T ss_pred             c-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence            3 9999999988875444433    11           8887776643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=8.3e-09  Score=88.65  Aligned_cols=116  Identities=20%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      ..++...+...++..+|.+|||.|.|+|.++.+|+.. ++.++|+..|+.+.+++.|++++... + ...++.+..+|+.
T Consensus        79 yPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~-l~d~v~~~~~Dv~  156 (256)
T COG2519          79 YPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-G-LGDRVTLKLGDVR  156 (256)
T ss_pred             cCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-c-cccceEEEecccc
Confidence            3445678888899999999999999999999999974 67789999999999999999999987 2 2344899999998


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHH
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~  285 (288)
                      +.-+++ .||+|+.     .+|+|..++          |.+++-.+.-..+..+.
T Consensus       157 ~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~  205 (256)
T COG2519         157 EGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV  205 (256)
T ss_pred             cccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence            876655 8999997     355665555          77777777655555443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.95  E-value=1.4e-08  Score=89.93  Aligned_cols=85  Identities=18%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+...++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...   ...++.++.+|+... +.+
T Consensus        98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~-~~~  173 (275)
T PRK09328         98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP-LPG  173 (275)
T ss_pred             HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-CCC
Confidence            3333344445678999999999999999999887779999999999999999998722   146799999998543 335


Q ss_pred             CccceEEec
Q 023019          247 SSIDAVHAG  255 (288)
Q Consensus       247 ~sfD~V~~~  255 (288)
                      ++||+|+++
T Consensus       174 ~~fD~Iv~n  182 (275)
T PRK09328        174 GRFDLIVSN  182 (275)
T ss_pred             CceeEEEEC
Confidence            789999985

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.95  E-value=5.5e-09  Score=94.20  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      ..+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++.. + ...++.++++|+.+. +++++||+|+++
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~-l~~~i~~~~~D~~~~-l~~~~fDlIvsN  208 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-G-LEDRVTLIESDLFAA-LPGRRYDLIVSN  208 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C-CCCcEEEEECchhhh-CCCCCccEEEEC
Confidence            36899999999999999999877789999999999999999998876 1 124699999998642 235689999986

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.93  E-value=3.4e-09  Score=96.03  Aligned_cols=85  Identities=14%  Similarity=0.231  Sum_probs=68.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-  244 (288)
                      ++.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.|++.|+++++.. +  ..++.++++|+.++.. 
T Consensus       162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~-~--l~~v~~~~~D~~~~~~~  236 (315)
T PRK03522        162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL-G--LTNVQFQALDSTQFATA  236 (315)
T ss_pred             HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEcCHHHHHHh
Confidence            34444555444578999999999999999999775  9999999999999999998876 2  3579999999987542 


Q ss_pred             CCCccceEEec
Q 023019          245 ASSSIDAVHAG  255 (288)
Q Consensus       245 ~~~sfD~V~~~  255 (288)
                      ..+.||+|+..
T Consensus       237 ~~~~~D~Vv~d  247 (315)
T PRK03522        237 QGEVPDLVLVN  247 (315)
T ss_pred             cCCCCeEEEEC
Confidence            24579999986

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.92  E-value=9.6e-09  Score=91.96  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ..+.+.+.+...++.+|||||||+|.++..+.+.+.  +|+++|+++.|++.+++++... + ...++.++.+|+...++
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~-~-~~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS-P-LASKLEVIEGDALKTEF   99 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc-C-CCCcEEEEECCHhhhcc
Confidence            346667777777789999999999999999998875  8999999999999999988764 1 13689999999987765


Q ss_pred             CCCccceEEecc
Q 023019          245 ASSSIDAVHAGA  256 (288)
Q Consensus       245 ~~~sfD~V~~~~  256 (288)
                        ..||.|+++-
T Consensus       100 --~~~d~VvaNl  109 (294)
T PTZ00338        100 --PYFDVCVANV  109 (294)
T ss_pred             --cccCEEEecC
Confidence              3689988754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.91  E-value=9.8e-09  Score=96.84  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC--
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~--  244 (288)
                      ..+...+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.+++.++++++.. |.. ..+.+..+|....++  
T Consensus       228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~~-~~v~~~~~d~~~~~~~~  305 (426)
T TIGR00563       228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GLT-IKAETKDGDGRGPSQWA  305 (426)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CCC-eEEEEeccccccccccc
Confidence            4455667777899999999999999999988754579999999999999999999887 322 234456777765543  


Q ss_pred             CCCccceEEe------ccccccCCC
Q 023019          245 ASSSIDAVHA------GAAIHCWSS  263 (288)
Q Consensus       245 ~~~sfD~V~~------~~vl~h~~d  263 (288)
                      .+++||.|++      .+++.+.|+
T Consensus       306 ~~~~fD~VllDaPcSg~G~~~~~p~  330 (426)
T TIGR00563       306 ENEQFDRILLDAPCSATGVIRRHPD  330 (426)
T ss_pred             cccccCEEEEcCCCCCCcccccCcc
Confidence            5678999996      346666655

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=1.8e-08  Score=95.04  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~  245 (288)
                      .+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..    ..++.++++|+..++  +.
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~~~  310 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQWWD  310 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhhcc
Confidence            344566777899999999999999999998875569999999999999999999886    234789999998764  34


Q ss_pred             CCccceEEe
Q 023019          246 SSSIDAVHA  254 (288)
Q Consensus       246 ~~sfD~V~~  254 (288)
                      .++||.|++
T Consensus       311 ~~~fD~Vl~  319 (427)
T PRK10901        311 GQPFDRILL  319 (427)
T ss_pred             cCCCCEEEE
Confidence            578999995

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.90  E-value=1.2e-08  Score=89.57  Aligned_cols=83  Identities=11%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  .++++|+++.|++.+++++..     ..++.++.+|+..++++
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~   90 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP   90 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh
Confidence            45666777767788999999999999999999987  799999999999999987643     36789999999998865


Q ss_pred             CCccc---eEEeccc
Q 023019          246 SSSID---AVHAGAA  257 (288)
Q Consensus       246 ~~sfD---~V~~~~v  257 (288)
                        .+|   +|+++-.
T Consensus        91 --~~d~~~~vvsNlP  103 (253)
T TIGR00755        91 --DFPKQLKVVSNLP  103 (253)
T ss_pred             --HcCCcceEEEcCC
Confidence              466   6666543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.90  E-value=4.9e-08  Score=84.96  Aligned_cols=128  Identities=18%  Similarity=0.253  Sum_probs=88.1

Q ss_pred             HhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 023019          150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (288)
Q Consensus       150 wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~  228 (288)
                      |...+-.....-..+++..+..++...+|.+|||.|.|+|.++..|++. ++.++|+..|..+..++.|+++++..+  .
T Consensus        13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l   90 (247)
T PF08704_consen   13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--L   90 (247)
T ss_dssp             HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--C
T ss_pred             HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--C
Confidence            4444433333445566788899999999999999999999999999976 778899999999999999999999872  3


Q ss_pred             CCCEEEEEecCCCCCCC---CCccceEEeccccccCCCccccc-----------ceEEEEecCcccHHHH
Q 023019          229 KENFLLVRADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGV-----------GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       229 ~~~i~~~~~d~~~lp~~---~~sfD~V~~~~vl~h~~d~~~~l-----------G~lvi~t~~~~~l~el  284 (288)
                      ..++.+...|+..-.|.   +..+|+|+.     -+|+|..++           |.+++-.+.-.....+
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~  155 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKT  155 (247)
T ss_dssp             CTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred             CCCceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence            56899999999754442   367999887     355555555           6666666655444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.89  E-value=8.5e-09  Score=75.92  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEecccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI  258 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~~vl  258 (288)
                      +|||+|||.|.++..+.+ ....+++++|+++.+++.+++.....   ...++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence            489999999999999988 33469999999999999998543322   25678899999987654 56789999999999


Q ss_pred             cc-CCCccccc
Q 023019          259 HC-WSSPSTGV  268 (288)
Q Consensus       259 ~h-~~d~~~~l  268 (288)
                      ++ ..+....+
T Consensus        77 ~~~~~~~~~~l   87 (107)
T cd02440          77 HHLVEDLARFL   87 (107)
T ss_pred             eehhhHHHHHH
Confidence            98 55544444

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.89  E-value=1.5e-08  Score=95.77  Aligned_cols=94  Identities=22%  Similarity=0.188  Sum_probs=75.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      ..+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.++++++.. |  ..++.++.+|+..++  
T Consensus       242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-g--~~~v~~~~~D~~~~~~~  318 (434)
T PRK14901        242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-G--LKSIKILAADSRNLLEL  318 (434)
T ss_pred             HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-C--CCeEEEEeCChhhcccc
Confidence            344556777789999999999999999988873 3469999999999999999999887 2  356899999998775  


Q ss_pred             --CCCCccceEEec------cccccCCC
Q 023019          244 --FASSSIDAVHAG------AAIHCWSS  263 (288)
Q Consensus       244 --~~~~sfD~V~~~------~vl~h~~d  263 (288)
                        +..++||.|++.      .++.+-++
T Consensus       319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~  346 (434)
T PRK14901        319 KPQWRGYFDRILLDAPCSGLGTLHRHPD  346 (434)
T ss_pred             cccccccCCEEEEeCCCCcccccccCcc
Confidence              446789999973      45555554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.88  E-value=1.9e-08  Score=86.26  Aligned_cols=101  Identities=20%  Similarity=0.284  Sum_probs=73.7

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC---------CCCCCE
Q 023019          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------FPKENF  232 (288)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g---------~~~~~i  232 (288)
                      +...+..+...+...++.+||..|||.|.-+.+|+++|.  +|+|+|+|+..++.+.+.......         ....++
T Consensus        22 ~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i   99 (218)
T PF05724_consen   22 PNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI   99 (218)
T ss_dssp             STHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence            333344444445666788999999999999999999998  999999999999998544321000         013468


Q ss_pred             EEEEecCCCCCCCC-CccceEEeccccccCCCc
Q 023019          233 LLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       233 ~~~~~d~~~lp~~~-~sfD~V~~~~vl~h~~d~  264 (288)
                      +++++|+..++... ++||+|+-...|+-++..
T Consensus       100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~  132 (218)
T PF05724_consen  100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPE  132 (218)
T ss_dssp             EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GG
T ss_pred             EEEEcccccCChhhcCCceEEEEecccccCCHH
Confidence            99999999987544 589999999999888643

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.87  E-value=1.9e-08  Score=84.35  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-------
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------  243 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-------  243 (288)
                      +....++.+|||+|||+|.++..+++.. ...+|+|+|+|+.+      .        ..++.++++|+.+.+       
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--------~~~i~~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--------IENVDFIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--------CCCceEEEeeCCChhHHHHHHH
Confidence            3344568999999999999999888875 44589999999964      1        246788889987643       


Q ss_pred             -CCCCccceEEeccccc--------cCC---Cccccc----------ceEEEEecCcccHHHHHh
Q 023019          244 -FASSSIDAVHAGAAIH--------CWS---SPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       244 -~~~~sfD~V~~~~vl~--------h~~---d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                       +++++||+|++....+        |..   +...++          |++++..+....+.++..
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~  157 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN  157 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence             4567899999865321        111   012222          999988777666555443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=9.2e-09  Score=91.52  Aligned_cols=71  Identities=25%  Similarity=0.346  Sum_probs=60.3

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      +|||+|||+|..+..++...+.++|+|+|+|+.+++.|++++... |.  .++.++++|+.+--  .++||+|+++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l--~~~~~~~~dlf~~~--~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GL--VRVLVVQSDLFEPL--RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CC--ccEEEEeeeccccc--CCceeEEEeC
Confidence            799999999999999999998889999999999999999999987 22  56677777655321  2489999996

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.85  E-value=5.9e-09  Score=85.21  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc----------ceEEEE
Q 023019          205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQV  274 (288)
Q Consensus       205 ~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~  274 (288)
                      +|+|+|++|++.|+++..........+++++++|++++|+++++||+|++.++++|++|+..++          |.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            4899999999999887653210112479999999999999999999999999999999998888          899988


Q ss_pred             ecCcc
Q 023019          275 TLIIH  279 (288)
Q Consensus       275 t~~~~  279 (288)
                      .+...
T Consensus        81 d~~~~   85 (160)
T PLN02232         81 DFNKS   85 (160)
T ss_pred             ECCCC
Confidence            87654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.84  E-value=2e-08  Score=96.50  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      +.+|||+|||+|.++..++...+..+|+++|+|+.+++.|++++... + ...++.++.+|+.+ +++.++||+|+++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~-l~~~v~~~~~D~~~-~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-E-VTDRIQIIHSNWFE-NIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-C-Cccceeeeecchhh-hCcCCCccEEEEC
Confidence            46899999999999999988776679999999999999999998765 1 23478899999754 2345689999995

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=4.4e-09  Score=88.60  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=90.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      -..++|||||-|...+.+...+- .+++-+|.|-.|++.++..     ..+...+...++|-+.++|.++++|+|++...
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~-----qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA-----QDPSIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc-----CCCceEEEEEecchhcccccccchhhhhhhhh
Confidence            45799999999999999998874 5899999999999999864     11345567788999999999999999999999


Q ss_pred             cccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023019          258 IHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       258 l~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~  287 (288)
                      +|++.|....+          |.|+.+-++.++|.||+-+
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s  186 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS  186 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence            99998877666          9999999999999999753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.82  E-value=8e-09  Score=87.77  Aligned_cols=94  Identities=21%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~  259 (288)
                      .++|+|||+|..++.+++...  +|+|+|+|+.||+.|++.....  .......+...+...|--.+++.|+|++..++|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhHH
Confidence            899999999988888888866  9999999999999998752211  001112222233333333389999999999999


Q ss_pred             cCCCccccc-----------ceEEEEecCc
Q 023019          260 CWSSPSTGV-----------GVFFQVTLII  278 (288)
Q Consensus       260 h~~d~~~~l-----------G~lvi~t~~~  278 (288)
                      ++.. +++.           |.+++-.+..
T Consensus       112 WFdl-e~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen  112 WFDL-ERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             hhch-HHHHHHHHHHcCCCCCEEEEEEccC
Confidence            8854 3333           5887777763

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.81  E-value=4.4e-08  Score=86.57  Aligned_cols=81  Identities=16%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 023019          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sf  249 (288)
                      ..+.+.++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.++++++.. |  ..++.++.+|+..++...+.|
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~~~f  141 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-G--VLNVAVTNFDGRVFGAAVPKF  141 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-C--CCcEEEecCCHHHhhhhccCC
Confidence            34566778999999999999999888764 2358999999999999999999887 2  357899999988776556679


Q ss_pred             ceEEe
Q 023019          250 DAVHA  254 (288)
Q Consensus       250 D~V~~  254 (288)
                      |+|++
T Consensus       142 D~Vl~  146 (264)
T TIGR00446       142 DAILL  146 (264)
T ss_pred             CEEEE
Confidence            99996

>PRK04457 spermidine synthase; Provisional

Probab=98.81  E-value=4.4e-08  Score=86.45  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~  254 (288)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++....  ...++.++.+|+.+. +-..++||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            34678999999999999999998887899999999999999999876431  136899999998643 222468999997


Q ss_pred             c
Q 023019          255 G  255 (288)
Q Consensus       255 ~  255 (288)
                      .
T Consensus       143 D  143 (262)
T PRK04457        143 D  143 (262)
T ss_pred             e
Confidence            5

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=6.2e-08  Score=91.89  Aligned_cols=82  Identities=16%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      ....+...++.+|||+|||+|..+..+++.. ..++|+++|+|+.|++.++++++.. |  ..++.++.+|+..++ +++
T Consensus       242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g--~~~v~~~~~Da~~~~-~~~  317 (445)
T PRK14904        242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-G--ITIIETIEGDARSFS-PEE  317 (445)
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-C--CCeEEEEeCcccccc-cCC
Confidence            3445566678999999999999988887753 2359999999999999999999887 2  347899999998775 457


Q ss_pred             ccceEEe
Q 023019          248 SIDAVHA  254 (288)
Q Consensus       248 sfD~V~~  254 (288)
                      +||+|++
T Consensus       318 ~fD~Vl~  324 (445)
T PRK14904        318 QPDAILL  324 (445)
T ss_pred             CCCEEEE
Confidence            8999996

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.80  E-value=3e-08  Score=83.77  Aligned_cols=87  Identities=14%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC
Q 023019          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF  244 (288)
Q Consensus       167 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~  244 (288)
                      +.+..++.. .++.+|||+|||+|.++..+..++. .+|+++|.++.+++.++++++.. +  ..++.++.+|+.+. +.
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~~~l~~  117 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNALSFLAQ  117 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHHHHHhh
Confidence            344444432 3577999999999999987655554 59999999999999999998887 2  34799999998653 22


Q ss_pred             CCCccceEEeccc
Q 023019          245 ASSSIDAVHAGAA  257 (288)
Q Consensus       245 ~~~sfD~V~~~~v  257 (288)
                      ...+||+|++.=-
T Consensus       118 ~~~~fDlV~~DPP  130 (199)
T PRK10909        118 PGTPHNVVFVDPP  130 (199)
T ss_pred             cCCCceEEEECCC
Confidence            3457999998644

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.80  E-value=4.5e-08  Score=85.84  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC-CCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF-ASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~-~~~sfD~V~~~  255 (288)
                      +.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++..      +..++++|+.+. +- ..++||+|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence            45899999999999999988766569999999999999999998765      246888998653 21 13579999986


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       161 P  161 (251)
T TIGR03704       161 A  161 (251)
T ss_pred             C
Confidence            4

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=4.4e-08  Score=92.41  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=69.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      .+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.++++++.. |  ..++.+..+|+..++ +.
T Consensus       228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~-g--~~~v~~~~~Da~~l~~~~  304 (431)
T PRK14903        228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL-K--LSSIEIKIADAERLTEYV  304 (431)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhhhhhhh
Confidence            34445677788999999999999998888863 3469999999999999999999887 2  346889999998776 45


Q ss_pred             CCccceEEe
Q 023019          246 SSSIDAVHA  254 (288)
Q Consensus       246 ~~sfD~V~~  254 (288)
                      +++||.|++
T Consensus       305 ~~~fD~Vl~  313 (431)
T PRK14903        305 QDTFDRILV  313 (431)
T ss_pred             hccCCEEEE
Confidence            678999996

>PTZ00146 fibrillarin; Provisional

Probab=98.78  E-value=4.6e-08  Score=86.70  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s  248 (288)
                      +...++.+|||+|||+|.++..+++.. +...|+++|+++.|++...+.++..     .++.++.+|+...   .....+
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCC
Confidence            445678999999999999999999883 4568999999998665555443332     5788899998642   223458


Q ss_pred             cceEEeccc
Q 023019          249 IDAVHAGAA  257 (288)
Q Consensus       249 fD~V~~~~v  257 (288)
                      ||+|++...
T Consensus       203 vDvV~~Dva  211 (293)
T PTZ00146        203 VDVIFADVA  211 (293)
T ss_pred             CCEEEEeCC
Confidence            999999764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.76  E-value=8.2e-08  Score=81.00  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=63.8

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C--CCCCccceEEe
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHA  254 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~sfD~V~~  254 (288)
                      ...+||||||.|.++..+++..|+..++|+|+....+..+.+++...+   ..|+.++++|+..+ +  ++++++|.|+.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEE
Confidence            338999999999999999999999999999999999999999988872   78999999999873 2  56789999988


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      .+
T Consensus        95 ~F   96 (195)
T PF02390_consen   95 NF   96 (195)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.76  E-value=3.6e-08  Score=93.17  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---  242 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---  242 (288)
                      ++.+.+++...++.+|||+|||+|.++..+++...  +|+|+|+++.|++.|++++... +  ..++.++.+|+.+.   
T Consensus       281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~-~--~~nv~~~~~d~~~~l~~  355 (431)
T TIGR00479       281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN-G--IANVEFLAGTLETVLPK  355 (431)
T ss_pred             HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh-C--CCceEEEeCCHHHHHHH
Confidence            44555666656678999999999999999998865  9999999999999999998876 2  46899999998652   


Q ss_pred             -CCCCCccceEEe
Q 023019          243 -PFASSSIDAVHA  254 (288)
Q Consensus       243 -p~~~~sfD~V~~  254 (288)
                       ++.+++||+|++
T Consensus       356 ~~~~~~~~D~vi~  368 (431)
T TIGR00479       356 QPWAGQIPDVLLL  368 (431)
T ss_pred             HHhcCCCCCEEEE
Confidence             244567999997

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=9.6e-08  Score=90.61  Aligned_cols=84  Identities=26%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~  244 (288)
                      .+...+...++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++++.. |  ..++.++++|+..++  +
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~  317 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL-G--LTNIETKALDARKVHEKF  317 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCCcccccchh
Confidence            44456666778899999999999999998874 4579999999999999999999887 2  345899999998763  3


Q ss_pred             CCCccceEEec
Q 023019          245 ASSSIDAVHAG  255 (288)
Q Consensus       245 ~~~sfD~V~~~  255 (288)
                      + ++||+|++.
T Consensus       318 ~-~~fD~Vl~D  327 (444)
T PRK14902        318 A-EKFDKILVD  327 (444)
T ss_pred             c-ccCCEEEEc
Confidence            3 789999974

>PLN02672 methionine S-methyltransferase

Probab=98.73  E-value=5.6e-08  Score=99.53  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CCCCCEEEEEecCCCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------FPKENFLLVRADISRLPF  244 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-------------~~~~~i~~~~~d~~~lp~  244 (288)
                      +.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++..+.             ....++.++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999988767999999999999999999986410             012469999999876431


Q ss_pred             C-CCccceEEecc
Q 023019          245 A-SSSIDAVHAGA  256 (288)
Q Consensus       245 ~-~~sfD~V~~~~  256 (288)
                      . ...||+|+++=
T Consensus       199 ~~~~~fDlIVSNP  211 (1082)
T PLN02672        199 DNNIELDRIVGCI  211 (1082)
T ss_pred             ccCCceEEEEECC
Confidence            1 23699999963

>PRK04148 hypothetical protein; Provisional

Probab=98.72  E-value=1.2e-07  Score=74.60  Aligned_cols=79  Identities=11%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.+.+.+...++.+|||||||+|. ++..|++.|.  .|+++|+++..++.++++          .+.++++|+.+..+.
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~   73 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLE   73 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHH
Confidence            445555655567899999999996 8889998887  999999999999988875          467899999876654


Q ss_pred             -CCccceEEeccc
Q 023019          246 -SSSIDAVHAGAA  257 (288)
Q Consensus       246 -~~sfD~V~~~~v  257 (288)
                       -+.+|+|.+..-
T Consensus        74 ~y~~a~liysirp   86 (134)
T PRK04148         74 IYKNAKLIYSIRP   86 (134)
T ss_pred             HHhcCCEEEEeCC
Confidence             467899998654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=3.6e-08  Score=77.39  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=71.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+-.+.-.|+.++|+|||.|.++....-..+ ..|+|+|+++..++.+++++...    ..++++.++|+..+-+..
T Consensus        38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~  112 (185)
T KOG3420|consen   38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG  112 (185)
T ss_pred             HHHHhhhccccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence            3344444555789999999999999966654443 68999999999999999998887    678899999999998888


Q ss_pred             CccceEEecccc
Q 023019          247 SSIDAVHAGAAI  258 (288)
Q Consensus       247 ~sfD~V~~~~vl  258 (288)
                      +.||.++.+--+
T Consensus       113 g~fDtaviNppF  124 (185)
T KOG3420|consen  113 GIFDTAVINPPF  124 (185)
T ss_pred             CeEeeEEecCCC
Confidence            999999986544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.67  E-value=8.4e-08  Score=89.34  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023019          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (288)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~  237 (288)
                      |++-...+...+...+.  ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++... |....++.++++
T Consensus       203 G~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~  278 (396)
T PRK15128        203 GYYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRD  278 (396)
T ss_pred             CcChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEc
Confidence            33333333333333333  378999999999999887665543 59999999999999999999887 322247899999


Q ss_pred             cCCCCC--C--CCCccceEEec
Q 023019          238 DISRLP--F--ASSSIDAVHAG  255 (288)
Q Consensus       238 d~~~lp--~--~~~sfD~V~~~  255 (288)
                      |+.+..  +  ..++||+|++.
T Consensus       279 D~~~~l~~~~~~~~~fDlVilD  300 (396)
T PRK15128        279 DVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_pred             cHHHHHHHHHhcCCCCCEEEEC
Confidence            987642  1  24689999986

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.66  E-value=5.9e-08  Score=82.51  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             eEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCCCCccceEE
Q 023019          180 NIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAVH  253 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~sfD~V~  253 (288)
                      +|||||||.|.....+.+..++  ..+++.|.|+.+++..+++....    ..++...+.|+..    -|...+++|.|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceEE
Confidence            8999999999999888887665  78999999999999999875543    3555555566542    356779999999


Q ss_pred             eccccccCCCc--cccc----------ceEEEEecCcccHHHHH
Q 023019          254 AGAAIHCWSSP--STGV----------GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       254 ~~~vl~h~~d~--~~~l----------G~lvi~t~~~~~l~el~  285 (288)
                      +.+||.-++--  ..++          |.+++.+++...+.+|+
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR  193 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR  193 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence            99999887521  1122          99999999998888775

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.65  E-value=8.7e-08  Score=83.20  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=68.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p  243 (288)
                      .+.+..+....++.+|||||||+|..+..++.. ...++++++|+++.+++.|++++++. |. ..++.++.+|+.+. +
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl-~~~i~~~~gda~~~L~  134 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GV-DHKINFIQSDALSALD  134 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEccHHHHHH
Confidence            344444445555789999999999988888776 34579999999999999999999887 32 36799999999763 2


Q ss_pred             -----CCCCccceEEecc
Q 023019          244 -----FASSSIDAVHAGA  256 (288)
Q Consensus       244 -----~~~~sfD~V~~~~  256 (288)
                           .+.++||+|+...
T Consensus       135 ~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        135 QLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             HHHhCCCCCCCCEEEECC
Confidence                 1246899999863

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.65  E-value=1.6e-07  Score=85.43  Aligned_cols=104  Identities=22%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-------CCCCEEEEEecCCCC------C
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------PKENFLLVRADISRL------P  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-------~~~~i~~~~~d~~~l------p  243 (288)
                      ++.+|||+|||.|.-+.-+...+. ..++|+|++...++.|+++..+....       ..-...++.+|....      +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            688999999998887666666654 59999999999999999998331000       013466788887632      2


Q ss_pred             CCCCccceEEeccccccCCCccccc--------------ceEEEEecCcccH
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV--------------GVFFQVTLIIHVV  281 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l--------------G~lvi~t~~~~~l  281 (288)
                      .....||+|-|-++||+.=..+...              |.|+.+++..+.+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence            2235999999999999864433322              7777777766655

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.64  E-value=9.9e-08  Score=88.48  Aligned_cols=84  Identities=13%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-C
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-A  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~  245 (288)
                      ..+..++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++++.. +  ..++.++.+|+.+... .
T Consensus       223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~-~--~~~~~~~~~d~~~~~~~~  297 (374)
T TIGR02085       223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML-G--LDNLSFAALDSAKFATAQ  297 (374)
T ss_pred             HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHHhc
Confidence            3344454434567999999999999999997765  9999999999999999998876 2  3489999999875421 1


Q ss_pred             CCccceEEec
Q 023019          246 SSSIDAVHAG  255 (288)
Q Consensus       246 ~~sfD~V~~~  255 (288)
                      .++||+|++.
T Consensus       298 ~~~~D~vi~D  307 (374)
T TIGR02085       298 MSAPELVLVN  307 (374)
T ss_pred             CCCCCEEEEC
Confidence            2469999884

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.5e-07  Score=80.66  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=72.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.....++..|||||+|.|.++..|.+++.  +|+++|+++.+++..++++..     ..++.++.+|+...+++
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcch
Confidence            56778888777789999999999999999999998  899999999999999998653     47899999999998876


Q ss_pred             CC-ccceEEecc
Q 023019          246 SS-SIDAVHAGA  256 (288)
Q Consensus       246 ~~-sfD~V~~~~  256 (288)
                      .- .++.|+++-
T Consensus        92 ~l~~~~~vVaNl  103 (259)
T COG0030          92 SLAQPYKVVANL  103 (259)
T ss_pred             hhcCCCEEEEcC
Confidence            53 578888764

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.64  E-value=2e-07  Score=81.12  Aligned_cols=96  Identities=18%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +..........+|||||+|.|.++..++++.|+.+++..|. |..++.+++         ..++.++.+|+. -+++.  
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--  158 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--  158 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence            33444444567899999999999999999999999999999 888888887         368999999998 55554  


Q ss_pred             cceEEeccccccCCCccccc-----------c---eEEEEecC
Q 023019          249 IDAVHAGAAIHCWSSPSTGV-----------G---VFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l-----------G---~lvi~t~~  277 (288)
                      +|+++..++||+++|.+...           |   +|++..+.
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            99999999999998765433           4   88887765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00811 spermidine synthase; Provisional

Probab=98.62  E-value=2.5e-07  Score=82.61  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCCCEEEEEecCCCC-CCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLVRADISRL-PFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~--~~~~i~~~~~d~~~l-p~~~~sfD~V~  253 (288)
                      .+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+......  ..+++.++.+|+... ....++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            467899999999999999988744468999999999999999988643111  257899999998753 33467899999


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      +...
T Consensus       156 ~D~~  159 (283)
T PRK00811        156 VDST  159 (283)
T ss_pred             ECCC
Confidence            8643

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.60  E-value=2e-07  Score=77.66  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~  236 (288)
                      ...+.......++..|||--||+|.++.+.+..+.+..         ++|.|+++.+++.|+++++.. | ....+.+.+
T Consensus        17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g-~~~~i~~~~   94 (179)
T PF01170_consen   17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-G-VEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T--CGGEEEEE
T ss_pred             HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-c-cCCceEEEe
Confidence            34555555666788999999999999998887765445         899999999999999999887 2 245689999


Q ss_pred             ecCCCCCCCCCccceEEeccc
Q 023019          237 ADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       237 ~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      .|+.++++.++++|+|+++--
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPP  115 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPP  115 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--
T ss_pred             cchhhcccccCCCCEEEECcc
Confidence            999999988899999999643

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.57  E-value=2.8e-07  Score=82.25  Aligned_cols=98  Identities=17%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-  243 (288)
                      .+.+++.+.+.++..+||.+||.|..+..+++..+ .++|+|+|.++.|++.|++++..     ..++.++++|+.++. 
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~   82 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE   82 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence            45667777777788999999999999999999864 57999999999999999988643     258999999998753 


Q ss_pred             -CCC--CccceEEecccc--ccCCCccccc
Q 023019          244 -FAS--SSIDAVHAGAAI--HCWSSPSTGV  268 (288)
Q Consensus       244 -~~~--~sfD~V~~~~vl--~h~~d~~~~l  268 (288)
                       .++  .++|.|++....  +++.++++-+
T Consensus        83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~RGF  112 (296)
T PRK00050         83 VLAEGLGKVDGILLDLGVSSPQLDDAERGF  112 (296)
T ss_pred             HHHcCCCccCEEEECCCccccccCCCcCCc
Confidence             112  279999996544  4567777765

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.57  E-value=3.6e-07  Score=82.55  Aligned_cols=81  Identities=11%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE-ecCCCCC----CCCCccce
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA  251 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~-~d~~~lp----~~~~sfD~  251 (288)
                      .+.++||||||+|.+...++.+.+.++++|+|+++.+++.|+++++... ....++.+.. .|...+.    .+.+.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            5689999999999888888777556799999999999999999998751 1235677654 3333221    24678999


Q ss_pred             EEecccc
Q 023019          252 VHAGAAI  258 (288)
Q Consensus       252 V~~~~vl  258 (288)
                      |+|+=-+
T Consensus       193 ivcNPPf  199 (321)
T PRK11727        193 TLCNPPF  199 (321)
T ss_pred             EEeCCCC
Confidence            9997443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.55  E-value=2.1e-07  Score=92.87  Aligned_cols=76  Identities=17%  Similarity=0.152  Sum_probs=62.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~  255 (288)
                      +.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.. |....++.++++|+.+. .-..++||+|++.
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            78999999999999999998765 47999999999999999999887 33225799999998653 1114689999984

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.53  E-value=3.2e-07  Score=82.26  Aligned_cols=78  Identities=17%  Similarity=0.329  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ...++.|||||||+|.++...++.|+ .+|+++|.|. +++.|++.+..+  .....++++.+.++++.+|..+.|+|++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEee
Confidence            34589999999999999999999996 7999999987 559999888776  2345689999999987666789999999


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      -+
T Consensus       134 EW  135 (346)
T KOG1499|consen  134 EW  135 (346)
T ss_pred             hh
Confidence            54

>PRK03612 spermidine synthase; Provisional

Probab=98.48  E-value=5.9e-07  Score=86.77  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HHhcC--CCCCCCEEEEEecCCCC-CCCCCccce
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA  251 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~--~~~~~--g~~~~~i~~~~~d~~~l-p~~~~sfD~  251 (288)
                      ++++|||||||+|..++.+.+.....+++++|+++++++.++++  +....  ....++++++.+|+.+. ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            46789999999999999998764336999999999999999983  32210  11246899999998763 333578999


Q ss_pred             EEecccc
Q 023019          252 VHAGAAI  258 (288)
Q Consensus       252 V~~~~vl  258 (288)
                      |++...-
T Consensus       377 Ii~D~~~  383 (521)
T PRK03612        377 IIVDLPD  383 (521)
T ss_pred             EEEeCCC
Confidence            9997543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.48  E-value=5.1e-07  Score=76.92  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE-ecCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL-  242 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~-~d~~~l-  242 (288)
                      .+.+...+.....++|||||.+.|+-+.+++...+ +++++.+|+++++++.|++++++. | ...++.++. +|+.+. 
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g-~~~~i~~~~~gdal~~l  125 (219)
T COG4122          48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-G-VDDRIELLLGGDALDVL  125 (219)
T ss_pred             HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-C-CcceEEEEecCcHHHHH
Confidence            34444455555688999999999999999999876 789999999999999999999998 3 344588888 476543 


Q ss_pred             C-CCCCccceEEeccc
Q 023019          243 P-FASSSIDAVHAGAA  257 (288)
Q Consensus       243 p-~~~~sfD~V~~~~v  257 (288)
                      . ...++||+|+.-..
T Consensus       126 ~~~~~~~fDliFIDad  141 (219)
T COG4122         126 SRLLDGSFDLVFIDAD  141 (219)
T ss_pred             HhccCCCccEEEEeCC
Confidence            2 45789999998543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.47  E-value=5.9e-07  Score=77.29  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=68.0

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS  248 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s  248 (288)
                      .........+||||||.|.++..+++..|...++|||+....+..|.+++.+.+   ..|+.+++.|+..+   -+++++
T Consensus        43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~s  119 (227)
T COG0220          43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGS  119 (227)
T ss_pred             HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCC
Confidence            333333468999999999999999999999999999999999999999998872   23999999999764   245669


Q ss_pred             cceEEecc
Q 023019          249 IDAVHAGA  256 (288)
Q Consensus       249 fD~V~~~~  256 (288)
                      .|-|+.++
T Consensus       120 l~~I~i~F  127 (227)
T COG0220         120 LDKIYINF  127 (227)
T ss_pred             eeEEEEEC
Confidence            99999854

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.46  E-value=8.4e-07  Score=76.80  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ...++||||+|.|..+..++....  +|++.|.|+.|....+++          +.+++  +..++.-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence            457899999999999999998877  999999999997766654          33333  3333333356899999999


Q ss_pred             ccccCCCccccc----------ceEEEEecCc
Q 023019          257 AIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       257 vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      +|..-.+|...|          |.++++...|
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            999999998888          9999887554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.45  E-value=6.9e-07  Score=77.00  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             HHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCE-EEEEecCCC-----
Q 023019          169 MKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISR-----  241 (288)
Q Consensus       169 l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i-~~~~~d~~~-----  241 (288)
                      +.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|++++|+....+.        ..++ .+...|+..     
T Consensus        66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~  136 (228)
T TIGR00478        66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPAD  136 (228)
T ss_pred             HHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhH
Confidence            3444332 4578999999999999999999864 5899999999888762221        1222 123333332     


Q ss_pred             CCCCCCccceEEeccccccCCCccccc
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      ++..-..+|+++++..+ -+++....+
T Consensus       137 ~~~d~~~~DvsfiS~~~-~l~~i~~~l  162 (228)
T TIGR00478       137 IFPDFATFDVSFISLIS-ILPELDLLL  162 (228)
T ss_pred             cCCCceeeeEEEeehHh-HHHHHHHHh
Confidence            22233478988887654 244444433

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.43  E-value=2.2e-06  Score=69.08  Aligned_cols=112  Identities=16%  Similarity=0.227  Sum_probs=87.7

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023019          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (288)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d  238 (288)
                      +......+.+...+....|..|||+|.|||-++..+.+++ .+..++.+|+|++.+....+.        .+.+.++.+|
T Consensus        31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~gd  102 (194)
T COG3963          31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIINGD  102 (194)
T ss_pred             CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccccc
Confidence            3444456777778888889999999999999999999986 457899999999999998887        5667789999


Q ss_pred             CCCCC-----CCCCccceEEeccccccCCCccccc------------ceEEEEecCcc
Q 023019          239 ISRLP-----FASSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLIIH  279 (288)
Q Consensus       239 ~~~lp-----~~~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~~~  279 (288)
                      +.++.     +.+..||.|++.--+-.+|-..+.-            |.++.-++++-
T Consensus       103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             hhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            98764     5667899999988776665432211            77887777643

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.43  E-value=1.4e-06  Score=75.43  Aligned_cols=77  Identities=23%  Similarity=0.253  Sum_probs=61.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE----ecCC-CCCCCCCccceE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR----ADIS-RLPFASSSIDAV  252 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~----~d~~-~lp~~~~sfD~V  252 (288)
                      +..|||+|||+|..+..+....++++++++|.|+.++..|.++++..+  ....+..+.    .|.. ..+..+++.|++
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEE
Confidence            557999999999999999998888999999999999999999988762  234555553    3332 345667899999


Q ss_pred             Eecc
Q 023019          253 HAGA  256 (288)
Q Consensus       253 ~~~~  256 (288)
                      +++-
T Consensus       227 vsNP  230 (328)
T KOG2904|consen  227 VSNP  230 (328)
T ss_pred             ecCC
Confidence            9974

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.42  E-value=1.2e-06  Score=72.45  Aligned_cols=87  Identities=18%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccc
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID  250 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD  250 (288)
                      ...+.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+-.    ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            3458899999999999999999983346999999999 9999999988752112466777777765421    2446899


Q ss_pred             eEEeccccccCC
Q 023019          251 AVHAGAAIHCWS  262 (288)
Q Consensus       251 ~V~~~~vl~h~~  262 (288)
                      +|++..++..-.
T Consensus       122 ~IlasDv~Y~~~  133 (173)
T PF10294_consen  122 VILASDVLYDEE  133 (173)
T ss_dssp             EEEEES--S-GG
T ss_pred             EEEEecccchHH
Confidence            999999998643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.42  E-value=4e-07  Score=77.28  Aligned_cols=80  Identities=10%  Similarity=0.098  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-----CCCCc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSS  248 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-----~~~~s  248 (288)
                      ....+|||||+++|+-+.++++..+ +++|+.+|+++..++.|++.++.. | ...+++++.+|+.+. +     -+.++
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g-~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-G-LDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-T-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-C-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            3467999999999999999998754 579999999999999999999886 2 246899999998652 2     11368


Q ss_pred             cceEEeccc
Q 023019          249 IDAVHAGAA  257 (288)
Q Consensus       249 fD~V~~~~v  257 (288)
                      ||+|+.-.-
T Consensus       122 fD~VFiDa~  130 (205)
T PF01596_consen  122 FDFVFIDAD  130 (205)
T ss_dssp             EEEEEEEST
T ss_pred             eeEEEEccc
Confidence            999998553

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=98.42  E-value=1.7e-06  Score=78.91  Aligned_cols=79  Identities=19%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HHhc--CCCCCCCEEEEEecCCC-CCCCCCccce
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISR-LPFASSSIDA  251 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~--~~~~--~g~~~~~i~~~~~d~~~-lp~~~~sfD~  251 (288)
                      ...+||+||||+|..++.+.+..+..+|+++|+++.|++.|++.  +...  +....+++.++.+|+.+ ++-..+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            35699999999999999998876556999999999999999972  1111  01125789999999886 3444578999


Q ss_pred             EEec
Q 023019          252 VHAG  255 (288)
Q Consensus       252 V~~~  255 (288)
                      |++.
T Consensus       230 IIvD  233 (374)
T PRK01581        230 IIID  233 (374)
T ss_pred             EEEc
Confidence            9987

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.40  E-value=2.1e-06  Score=74.39  Aligned_cols=85  Identities=13%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.|.+....++++.|||||.|||.++..+.+.+.  +|+++|+++.|+....++.+.-  .......++.+|....++ 
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gt--p~~~kLqV~~gD~lK~d~-  121 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGT--PKSGKLQVLHGDFLKTDL-  121 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCC--CccceeeEEecccccCCC-
Confidence            45666666777899999999999999999999998  9999999999999999987654  113678899999987754 


Q ss_pred             CCccceEEecc
Q 023019          246 SSSIDAVHAGA  256 (288)
Q Consensus       246 ~~sfD~V~~~~  256 (288)
                       ..||.++++.
T Consensus       122 -P~fd~cVsNl  131 (315)
T KOG0820|consen  122 -PRFDGCVSNL  131 (315)
T ss_pred             -cccceeeccC
Confidence             3689999854

>TIGR00417 speE spermidine synthase

Probab=98.39  E-value=3.1e-06  Score=75.04  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=61.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISR-LPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~  255 (288)
                      +.+||+||||+|.++..+.+..+..+++++|+++.+++.|++.+....+ ....+++++.+|+.. +....++||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            4599999999999999998876446899999999999999998755311 124678888888754 22225789999986


Q ss_pred             cc
Q 023019          256 AA  257 (288)
Q Consensus       256 ~v  257 (288)
                      ..
T Consensus       153 ~~  154 (270)
T TIGR00417       153 ST  154 (270)
T ss_pred             CC
Confidence            54

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=98.39  E-value=1.8e-06  Score=77.76  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-C-CCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-P-FASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p-~~~~sfD~V~  253 (288)
                      .+.+||+||||.|..++.+.+.....+|+.+|+++.+++.|++.+.... +...++++++.+|+... . .++++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            4679999999999999999887434689999999999999999876531 12357899999997532 1 2356899999


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      +...
T Consensus       171 ~D~~  174 (308)
T PLN02366        171 VDSS  174 (308)
T ss_pred             EcCC
Confidence            8543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.39  E-value=1.5e-06  Score=78.26  Aligned_cols=85  Identities=21%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~lp~  244 (288)
                      ...+.+.-...+|..|||-=||||.++..+.-.|.  +++|.|++..|++-|+.|++..+   .....+... |+..+|+
T Consensus       186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lpl  260 (347)
T COG1041         186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLPL  260 (347)
T ss_pred             HHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCCC
Confidence            45556666677899999999999999999998887  99999999999999999998872   355655666 9999999


Q ss_pred             CCCccceEEec
Q 023019          245 ASSSIDAVHAG  255 (288)
Q Consensus       245 ~~~sfD~V~~~  255 (288)
                      ++.++|+|.+-
T Consensus       261 ~~~~vdaIatD  271 (347)
T COG1041         261 RDNSVDAIATD  271 (347)
T ss_pred             CCCccceEEec
Confidence            98899999983

>PLN02476 O-methyltransferase

Probab=98.36  E-value=2.8e-06  Score=75.16  Aligned_cols=89  Identities=15%  Similarity=0.065  Sum_probs=69.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p  243 (288)
                      .+.+.......++++|||||+++|+.+.+++... ..++++.+|.++++++.|++++++. |. ..+++++.+|+.+. +
T Consensus       107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl-~~~I~li~GdA~e~L~  184 (278)
T PLN02476        107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GV-SHKVNVKHGLAAESLK  184 (278)
T ss_pred             HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHH
Confidence            3444444455567899999999999999998763 3568999999999999999999987 32 36899999998652 2


Q ss_pred             -C----CCCccceEEecc
Q 023019          244 -F----ASSSIDAVHAGA  256 (288)
Q Consensus       244 -~----~~~sfD~V~~~~  256 (288)
                       +    ..++||+|+...
T Consensus       185 ~l~~~~~~~~FD~VFIDa  202 (278)
T PLN02476        185 SMIQNGEGSSYDFAFVDA  202 (278)
T ss_pred             HHHhcccCCCCCEEEECC
Confidence             1    246899999854

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.34  E-value=1.2e-06  Score=80.70  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ++.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.|++.|++++... +  ..++.++.+|+.+
T Consensus       187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~-~--~~~v~~~~~d~~~  256 (353)
T TIGR02143       187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN-N--IDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEEcCHHH
Confidence            44455555432 34799999999999999988765  9999999999999999998876 2  3579999999875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.5e-06  Score=71.26  Aligned_cols=106  Identities=19%  Similarity=0.258  Sum_probs=78.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-C-CCCEEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCEEEEEe
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRA  237 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~-~~~~v~gvD~s~~~l~~A~~~~~~~~-------g~~~~~i~~~~~  237 (288)
                      +.|..+|  .+|...||+|.|+|+++..++.. + .+..++|||.-++.++.+++++.+..       .....++.++.+
T Consensus        74 e~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   74 EYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            4444444  45999999999999999888865 3 32345999999999999999997751       011356788999


Q ss_pred             cCCCCCCCCCccceEEeccccccCCCccccc------ceEEEEec
Q 023019          238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGV------GVFFQVTL  276 (288)
Q Consensus       238 d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l------G~lvi~t~  276 (288)
                      |....--+...||.|++...-.-++  +..+      |++++-..
T Consensus       152 Dgr~g~~e~a~YDaIhvGAaa~~~p--q~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  152 DGRKGYAEQAPYDAIHVGAAASELP--QELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CccccCCccCCcceEEEccCccccH--HHHHHhhccCCeEEEeec
Confidence            9998877889999999986655443  2333      77776554

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.33  E-value=2.6e-06  Score=75.82  Aligned_cols=76  Identities=20%  Similarity=0.328  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ....++.|||+|||+|.++...++.|. .+|+++|.|+ |.++|++.++.+  ....++.++.+.++++.++ ++.|+|+
T Consensus       174 sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviI  248 (517)
T KOG1500|consen  174 SDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVII  248 (517)
T ss_pred             cccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEE
Confidence            344688999999999999999999987 6999999876 999999988764  4568899999999988775 6789999


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      +
T Consensus       249 S  249 (517)
T KOG1500|consen  249 S  249 (517)
T ss_pred             e
Confidence            7

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.33  E-value=4e-06  Score=70.42  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C-CCC-ccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-~~~-sfD~V  252 (288)
                      .+.+|||++||+|.++..++.++. ..|+++|.++.+++.++++++.. + ...++.++.+|+... . + ... .||+|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~-~~~~~~~~~~D~~~~l~~~~~~~~~~dvv  125 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-K-SGEQAEVVRNSALRALKFLAKKPTFDNVI  125 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-C-CcccEEEEehhHHHHHHHhhccCCCceEE
Confidence            478999999999999999999986 58999999999999999998876 2 224688999998542 2 1 122 47888


Q ss_pred             Ee
Q 023019          253 HA  254 (288)
Q Consensus       253 ~~  254 (288)
                      +.
T Consensus       126 ~~  127 (189)
T TIGR00095       126 YL  127 (189)
T ss_pred             EE
Confidence            77

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.33  E-value=1.8e-06  Score=79.82  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ++.+.+++... +.+|||++||+|.++..+++...  +|+|+|.++.+++.|++++... +  ..++.++.+|+.+
T Consensus       196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~-~--~~~v~~~~~d~~~  265 (362)
T PRK05031        196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN-G--IDNVQIIRMSAEE  265 (362)
T ss_pred             HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEECCHHH
Confidence            44455555432 35799999999999999988765  9999999999999999998876 2  3589999999865

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.31  E-value=6.4e-06  Score=77.93  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             CCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      +..|||||||+|.++...++.+    ...+|+++|-++.+....+++++..  ....+|+++.+|++++..+ .++|+|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~lp-ekvDIIV  263 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVELP-EKVDIIV  263 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCCC-CceeEEE
Confidence            5789999999999988777664    2369999999999888877765554  2457899999999998764 4899999


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      +
T Consensus       264 S  264 (448)
T PF05185_consen  264 S  264 (448)
T ss_dssp             E
T ss_pred             E
Confidence            8

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=2.6e-06  Score=80.07  Aligned_cols=85  Identities=21%  Similarity=0.265  Sum_probs=73.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      .++.+.+++...++.+|||+=||.|.++..+++...  +|+|+|+++.+++.|+++++.++   ..|+.|..+++++...
T Consensus       281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~  355 (432)
T COG2265         281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence            366677788877788999999999999999998876  99999999999999999999873   5669999999987653


Q ss_pred             C---CCccceEEe
Q 023019          245 A---SSSIDAVHA  254 (288)
Q Consensus       245 ~---~~sfD~V~~  254 (288)
                      .   ...+|+|+.
T Consensus       356 ~~~~~~~~d~Vvv  368 (432)
T COG2265         356 AWWEGYKPDVVVV  368 (432)
T ss_pred             hccccCCCCEEEE
Confidence            3   357899998

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.28  E-value=3.6e-06  Score=77.85  Aligned_cols=94  Identities=19%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~  236 (288)
                      .|++-...+.......+-  .|++|||+-|=||.++..++..|. .+|++||+|...++.|+++++.+ |....++.|++
T Consensus       199 TGfFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~  274 (393)
T COG1092         199 TGFFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIV  274 (393)
T ss_pred             ceeeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeeh
Confidence            344444444333333332  289999999999999999998886 59999999999999999999998 56667789999


Q ss_pred             ecCCCC----CCCCCccceEEe
Q 023019          237 ADISRL----PFASSSIDAVHA  254 (288)
Q Consensus       237 ~d~~~l----p~~~~sfD~V~~  254 (288)
                      +|+.+.    .-...+||+|+.
T Consensus       275 ~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         275 GDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             hhHHHHHHHHHhcCCcccEEEE
Confidence            998753    223458999998

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.27  E-value=4.9e-06  Score=73.77  Aligned_cols=84  Identities=23%  Similarity=0.303  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCCCEEEEEecCCC------CCCCCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISR------LPFASS  247 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~---~~~~i~~~~~d~~~------lp~~~~  247 (288)
                      ++..++|+|||.|.-+.-+-+.+. ..++|+||++..+++|+++.....+-   ..-.+.|+.+|-..      +++++.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            478899999999988877777765 58999999999999999998764110   01246788888642      456677


Q ss_pred             ccceEEeccccccC
Q 023019          248 SIDAVHAGAAIHCW  261 (288)
Q Consensus       248 sfD~V~~~~vl~h~  261 (288)
                      +||+|-|-+++|+-
T Consensus       196 ~fDivScQF~~HYa  209 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYA  209 (389)
T ss_pred             CcceeeeeeeEeee
Confidence            79999999999973

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.26  E-value=5.2e-06  Score=70.12  Aligned_cols=85  Identities=19%  Similarity=0.204  Sum_probs=60.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .++.+..  .++..|||+.||-|.++..+++.+....|+++|+++..++..+++++.+  .....+..+.+|+..+.. .
T Consensus        93 ~Ri~~~v--~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~-~  167 (200)
T PF02475_consen   93 RRIANLV--KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP-E  167 (200)
T ss_dssp             HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG----T
T ss_pred             HHHHhcC--CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC-c
Confidence            3444544  3488999999999999999999555569999999999999999999886  235678999999988765 7


Q ss_pred             CccceEEecc
Q 023019          247 SSIDAVHAGA  256 (288)
Q Consensus       247 ~sfD~V~~~~  256 (288)
                      +.||.|++..
T Consensus       168 ~~~drvim~l  177 (200)
T PF02475_consen  168 GKFDRVIMNL  177 (200)
T ss_dssp             T-EEEEEE--
T ss_pred             cccCEEEECC
Confidence            8999999865

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=1.8e-05  Score=64.74  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      .....+||||||+|..+..+++. ++++.+.++|+++.+++...+.+..+    ..++..++.|+..-- ..++.|+++.
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDvLvf  116 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDVLVF  116 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccEEEE
Confidence            33668999999999999998887 67789999999999999998888776    456888999886432 2388898887


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      +-
T Consensus       117 NP  118 (209)
T KOG3191|consen  117 NP  118 (209)
T ss_pred             CC
Confidence            64

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.22  E-value=5.5e-06  Score=76.27  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=56.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .++.+.+++...++ .|||+-||.|.++..+++...  +|+|+|.++.+++.|+++++..+   ..++.|+.++++++
T Consensus       185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~  256 (352)
T PF05958_consen  185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHC
T ss_pred             HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccch
Confidence            36677778876655 899999999999999999887  99999999999999999999872   57899998877543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.21  E-value=8.8e-06  Score=71.85  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++..|||||.|.|.++..+.+.+.  +++++|+++.+++..++++..     ..++.++.+|+..+...
T Consensus        19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGG
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccH
Confidence            46777788777899999999999999999999985  999999999999999997653     47899999999988755


Q ss_pred             C---CccceEEecc
Q 023019          246 S---SSIDAVHAGA  256 (288)
Q Consensus       246 ~---~sfD~V~~~~  256 (288)
                      .   .....|+++-
T Consensus        92 ~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   92 DLLKNQPLLVVGNL  105 (262)
T ss_dssp             GHCSSSEEEEEEEE
T ss_pred             HhhcCCceEEEEEe
Confidence            4   3445566543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.20  E-value=2.4e-06  Score=80.03  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=67.1

Q ss_pred             HHHHHhhcCC----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023019          166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (288)
Q Consensus       166 ~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d  238 (288)
                      ++.|.+.+..    +.-..+||||||+|.|+.+|.+++-  .+..+   |..+.+++.|-++     |     +..+.+-
T Consensus       102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR-----G-----vpa~~~~  169 (506)
T PF03141_consen  102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER-----G-----VPAMIGV  169 (506)
T ss_pred             HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc-----C-----cchhhhh
Confidence            3445555543    2223589999999999999999864  33332   4445566666665     2     2233333


Q ss_pred             --CCCCCCCCCccceEEeccccccCCCc--------cccc---ceEEEEecCc
Q 023019          239 --ISRLPFASSSIDAVHAGAAIHCWSSP--------STGV---GVFFQVTLII  278 (288)
Q Consensus       239 --~~~lp~~~~sfD~V~~~~vl~h~~d~--------~~~l---G~lvi~t~~~  278 (288)
                        ...|||++++||+|+|..++-.+..-        +++|   |+|+++.+-.
T Consensus       170 ~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  170 LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence              46899999999999999888765444        3333   8888887643

; GO: 0008168 methyltransferase activity

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.19  E-value=9.6e-06  Score=72.26  Aligned_cols=106  Identities=11%  Similarity=0.108  Sum_probs=69.3

Q ss_pred             CCCcHHHHHHHHhhcCC-CCCCeEEEEcCccch----HHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHh------
Q 023019          159 FPGPEKEFELMKGYLKP-VLGGNIIDASCGSGL----FSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQ------  223 (288)
Q Consensus       159 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~----~~~~l~~~~----~~~~v~gvD~s~~~l~~A~~~~~~------  223 (288)
                      |+.....++.+.+.+.. ...-+|+..||+||.    ++..+.+..    ...+|+|+|+|+.+++.|++-.-.      
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~  175 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT  175 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence            33333444555444322 224689999999994    334444432    135899999999999999874200      


Q ss_pred             ------------c----CCC------CCCCEEEEEecCCCCCCC-CCccceEEeccccccCCCc
Q 023019          224 ------------E----SNF------PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       224 ------------~----~g~------~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~vl~h~~d~  264 (288)
                                  .    +|.      .-..+.|.+.|+.+.+++ .+.||+|+|.+++.|+...
T Consensus       176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~  239 (287)
T PRK10611        176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT  239 (287)
T ss_pred             CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence                        0    000      114568888998875543 5789999999999999654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.19  E-value=5e-06  Score=75.13  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 023019          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPKE  230 (288)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~  230 (288)
                      .+++|....+.+..++...++.+|||-+||+|.++..+.+.       .....++|+|+++.++..|+-++... |....
T Consensus        27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~  105 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDNS  105 (311)
T ss_dssp             GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHCB
T ss_pred             eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-ccccc
Confidence            47888888899999998877889999999999999888773       24469999999999999999877554 22234


Q ss_pred             CEEEEEecCCCCCCC--CCccceEEecc
Q 023019          231 NFLLVRADISRLPFA--SSSIDAVHAGA  256 (288)
Q Consensus       231 ~i~~~~~d~~~lp~~--~~sfD~V~~~~  256 (288)
                      ...+..+|....+..  ...||+|+++-
T Consensus       106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NP  133 (311)
T PF02384_consen  106 NINIIQGDSLENDKFIKNQKFDVIIGNP  133 (311)
T ss_dssp             GCEEEES-TTTSHSCTST--EEEEEEE-
T ss_pred             cccccccccccccccccccccccccCCC
Confidence            456788887655433  47899999964

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1e-06  Score=58.30  Aligned_cols=46  Identities=26%  Similarity=0.480  Sum_probs=40.0

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....         +.+.+.|+.|+..|++++|++.++.+.
T Consensus         4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e   49 (60)
T COG2835           4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE   49 (60)
T ss_pred             hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence            3578999999999988764         456999999999999999999998754

>PRK11827 hypothetical protein; Provisional

Probab=98.16  E-value=1e-06  Score=58.92  Aligned_cols=46  Identities=15%  Similarity=0.269  Sum_probs=39.0

Q ss_pred             cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCC
Q 023019           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (288)
Q Consensus        68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  122 (288)
                      -+++++||.|+++|....         ....+.|..|+..|++++|++.++.+..
T Consensus         5 LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~deA   50 (60)
T PRK11827          5 LLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETEA   50 (60)
T ss_pred             HHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHHh
Confidence            468899999999998643         3467999999999999999999987643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.15  E-value=3.1e-06  Score=68.95  Aligned_cols=72  Identities=24%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCc-cceEEec
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG  255 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~s-fD~V~~~  255 (288)
                      .|+|+.||.|..+..+++.+.  +|+++|+++..++.|+.+++-.|  ...++.++++|+.++.  +.... +|+|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            699999999999999999987  99999999999999999998872  3568999999987652  22222 8999973

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.14  E-value=4.2e-06  Score=70.83  Aligned_cols=86  Identities=10%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ...+.||.|+|.|+.+..+.-... .+|.-+|+.+.+++.|++.+...   ...-..+++.-+++...+.++||+|++-+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence            356899999999999987754432 49999999999999999886653   13446777777887765668999999999


Q ss_pred             ccccCCCccc
Q 023019          257 AIHCWSSPST  266 (288)
Q Consensus       257 vl~h~~d~~~  266 (288)
                      ++.|+.|.+-
T Consensus       131 ~lghLTD~dl  140 (218)
T PF05891_consen  131 CLGHLTDEDL  140 (218)
T ss_dssp             -GGGS-HHHH
T ss_pred             hhccCCHHHH
Confidence            9999987643

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.14  E-value=2e-05  Score=70.55  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=81.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-  243 (288)
                      ..+.+++.+...+++.++|.-+|.|..+..+.+..+.++|+|+|.++.+++.|++++...    ..++.+++++..++. 
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE   83 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence            346677788877889999999999999999998865589999999999999999998765    468999999988753 


Q ss_pred             ----CCCCccceEEecccc--ccCCCccccc
Q 023019          244 ----FASSSIDAVHAGAAI--HCWSSPSTGV  268 (288)
Q Consensus       244 ----~~~~sfD~V~~~~vl--~h~~d~~~~l  268 (288)
                          ....++|.|+....+  +++.++++-+
T Consensus        84 ~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGF  114 (305)
T TIGR00006        84 HLDELLVTKIDGILVDLGVSSPQLDDPERGF  114 (305)
T ss_pred             HHHhcCCCcccEEEEeccCCHhhcCCCCCCC
Confidence                233679999996654  4677777766

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.13  E-value=6.4e-06  Score=76.49  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      +.+|||++||+|.++..++.......|+++|+++.+++.++++++.. +  ..++.+..+|+..+....+.||+|+..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~--~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-G--LENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            46899999999999999987644358999999999999999999876 2  345678999987643214579999984

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.13  E-value=1.2e-05  Score=71.53  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C--CCCCccceEEe
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHA  254 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~sfD~V~~  254 (288)
                      +++|||+-|=||.++..++..|. .+|+.||.|..+++.|++++..+ |....++.++++|+.+. .  -..++||+|++
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            78999999999999999888775 58999999999999999999987 45557899999998642 1  12468999998

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=3.9e-05  Score=66.60  Aligned_cols=90  Identities=18%  Similarity=0.292  Sum_probs=77.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .++.++..+|...||.+|||-|.|+|.++.++++. +|.++++..|+.+...+.|++-++.. | ...++++..-|+...
T Consensus        92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-g-i~~~vt~~hrDVc~~  169 (314)
T KOG2915|consen   92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-G-IGDNVTVTHRDVCGS  169 (314)
T ss_pred             ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-C-CCcceEEEEeecccC
Confidence            34678889999999999999999999999999988 67789999999999999999999887 2 578999999999876


Q ss_pred             CCC--CCccceEEec
Q 023019          243 PFA--SSSIDAVHAG  255 (288)
Q Consensus       243 p~~--~~sfD~V~~~  255 (288)
                      .|.  +..+|+|+..
T Consensus       170 GF~~ks~~aDaVFLD  184 (314)
T KOG2915|consen  170 GFLIKSLKADAVFLD  184 (314)
T ss_pred             CccccccccceEEEc
Confidence            554  5678988873

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.08  E-value=1.2e-05  Score=70.27  Aligned_cols=89  Identities=11%  Similarity=0.061  Sum_probs=69.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p  243 (288)
                      .+.+...+......+|||||+++|+-+.+++... +.++++.+|.++...+.|+++++.. | ...+++++.+|+.+. +
T Consensus        68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g-~~~~I~~~~G~a~e~L~  145 (247)
T PLN02589         68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-G-VAHKIDFREGPALPVLD  145 (247)
T ss_pred             HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-C-CCCceEEEeccHHHHHH
Confidence            3444444444557799999999999999998763 4579999999999999999999987 3 247899999998653 2


Q ss_pred             -C-----CCCccceEEecc
Q 023019          244 -F-----ASSSIDAVHAGA  256 (288)
Q Consensus       244 -~-----~~~sfD~V~~~~  256 (288)
                       +     ..++||+|+.-.
T Consensus       146 ~l~~~~~~~~~fD~iFiDa  164 (247)
T PLN02589        146 QMIEDGKYHGTFDFIFVDA  164 (247)
T ss_pred             HHHhccccCCcccEEEecC
Confidence             1     136899999854

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.07  E-value=1.7e-05  Score=76.44  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~  254 (288)
                      .+..+||||||.|.++..+++..|+..++|+|+....+..+.+++... +  ..|+.++..|+..+  -++++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~-~--l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ-N--ITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc-C--CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            467899999999999999999999999999999999998888887665 2  56888888887533  267889999998


Q ss_pred             ccc
Q 023019          255 GAA  257 (288)
Q Consensus       255 ~~v  257 (288)
                      ++-
T Consensus       424 ~FP  426 (506)
T PRK01544        424 LFP  426 (506)
T ss_pred             ECC
Confidence            543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.05  E-value=2.7e-05  Score=65.54  Aligned_cols=95  Identities=20%  Similarity=0.321  Sum_probs=66.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p  243 (288)
                      .+.|.+++... +.+|||||+|||....++++..|..+-.-.|+++..+...+..+... +...... -+..|+..-  +
T Consensus        15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-~~~Nv~~-P~~lDv~~~~w~   91 (204)
T PF06080_consen   15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-GLPNVRP-PLALDVSAPPWP   91 (204)
T ss_pred             HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc-CCcccCC-CeEeecCCCCCc
Confidence            35666776542 33699999999999999999999888888999998876666655554 2111111 223455433  2


Q ss_pred             C------CCCccceEEeccccccCCC
Q 023019          244 F------ASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       244 ~------~~~sfD~V~~~~vl~h~~d  263 (288)
                      .      ..++||+|++.+++|-++.
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~lHI~p~  117 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINMLHISPW  117 (204)
T ss_pred             cccccccCCCCcceeeehhHHHhcCH
Confidence            2      3468999999999997764

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.04  E-value=1.2e-05  Score=67.77  Aligned_cols=90  Identities=12%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCccch----HHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHh------------------cCCCC-
Q 023019          177 LGGNIIDASCGSGL----FSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQ------------------ESNFP-  228 (288)
Q Consensus       177 ~~~~VLDiGcG~G~----~~~~l~~~-----~~~~~v~gvD~s~~~l~~A~~~~~~------------------~~g~~-  228 (288)
                      ..-+|+-+||++|.    ++..+.+.     ....+++|+|+|+.+++.|++-.-.                  ..|.. 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            46789999999994    34444441     2246999999999999999863200                  00100 


Q ss_pred             ------CCCEEEEEecCCCCCCCCCccceEEeccccccCCCccc
Q 023019          229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST  266 (288)
Q Consensus       229 ------~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~  266 (288)
                            -..+.|.+.|+.+.+...+.||+|+|.+||-++....+
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~  154 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQ  154 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHH
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHH
Confidence                  14688999999884445689999999999999976533

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.02  E-value=2.8e-05  Score=62.06  Aligned_cols=80  Identities=20%  Similarity=0.218  Sum_probs=57.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD  250 (288)
                      .+...|+|+|||.|+++..++.     . ++.+|+|+|.++..++.+.++.+..+.....+..+..++....+. ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            5678999999999999999998     4 557999999999999999998876511112455566655543321 44566


Q ss_pred             eEEeccc
Q 023019          251 AVHAGAA  257 (288)
Q Consensus       251 ~V~~~~v  257 (288)
                      +++..++
T Consensus       102 ~~vgLHa  108 (141)
T PF13679_consen  102 ILVGLHA  108 (141)
T ss_pred             EEEEeec
Confidence            6666543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.01  E-value=3.7e-05  Score=70.39  Aligned_cols=89  Identities=12%  Similarity=0.051  Sum_probs=71.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------C-------EEEE
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------LVVA  206 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~g  206 (288)
                      ...++..-+-.++..++|--||+|.++...+..+.+                                +       .++|
T Consensus       180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            444555445555678999999999999988877641                                1       3779


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       207 vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      +|+++.|++.|+.++...|  ..+.|.|.++|+..++-+-+.+|+|+++-
T Consensus       260 ~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NP  307 (381)
T COG0116         260 SDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNP  307 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence            9999999999999999873  46779999999998875447899999964

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.98  E-value=1.2e-05  Score=67.17  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=62.8

Q ss_pred             HHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C
Q 023019          166 FELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L  242 (288)
Q Consensus       166 ~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l  242 (288)
                      .+.+..++..  -++.++||+-||+|.++.++..+|. .+|+.+|.++..++..+++++..+  ...++.++..|+.. +
T Consensus        29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l  105 (183)
T PF03602_consen   29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFL  105 (183)
T ss_dssp             HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHH
T ss_pred             HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHH
Confidence            3445555543  3689999999999999999999986 599999999999999999998762  12358888888543 2


Q ss_pred             C---CCCCccceEEec
Q 023019          243 P---FASSSIDAVHAG  255 (288)
Q Consensus       243 p---~~~~sfD~V~~~  255 (288)
                      +   -....||+|++.
T Consensus       106 ~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen  106 LKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             HHHHHCTS-EEEEEE-
T ss_pred             HhhcccCCCceEEEEC
Confidence            1   246789999984

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.98  E-value=6.1e-05  Score=68.40  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=86.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      |..++.+....  |.+|||.=+|-|.++..+++.+.. .|+++|+++..++..+++++.++  ....+..+++|+.+...
T Consensus       178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~  252 (341)
T COG2520         178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP  252 (341)
T ss_pred             HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh
Confidence            34555555554  899999999999999999999872 49999999999999999999872  33448899999998876


Q ss_pred             CCCccceEEeccccc---cCCCccccc---ceEEEEecCcccH
Q 023019          245 ASSSIDAVHAGAAIH---CWSSPSTGV---GVFFQVTLIIHVV  281 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~---h~~d~~~~l---G~lvi~t~~~~~l  281 (288)
                      ..+.||-|+++..-.   .++.....+   |.+.+-.+.++..
T Consensus       253 ~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         253 ELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             ccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            668999999987642   222222222   8888887776655

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.95  E-value=3.8e-05  Score=61.03  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ++||||||.|.++..+++.++..+++++|+++.+.+.++++++..+   ..++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence            4899999999999999999886789999999999999999987751   2457777666553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.94  E-value=8.2e-05  Score=66.13  Aligned_cols=106  Identities=18%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC-CCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~-~lp~~  245 (288)
                      .+...+......+|||+|+|.|..+..+.+..+ ..+++.+|.|+.|++.++..+....  ......+...... ..++ 
T Consensus        24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~-  100 (274)
T PF09243_consen   24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYRDFLPF-  100 (274)
T ss_pred             HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhcccccC-
Confidence            333334444567999999999987776666532 3589999999999999998766541  1111111111111 1222 


Q ss_pred             CCccceEEeccccccCCCccccc-----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV-----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l-----------G~lvi~t~~~  278 (288)
                       ...|+|++.++|..+++ ..-.           +.|++..++.
T Consensus       101 -~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt  142 (274)
T PF09243_consen  101 -PPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGT  142 (274)
T ss_pred             -CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCC
Confidence             23399999999999988 3222           8788877754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.93  E-value=0.00011  Score=61.28  Aligned_cols=75  Identities=19%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      +++|||+|.|.-+..++-..|..+++.+|....-+...+......+   ..++.++.+.+++ +....+||+|++..+-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAVA  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESSS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehhc
Confidence            8999999999999999888888899999999988877777766652   5689999999998 5557899999997764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.91  E-value=8e-06  Score=71.40  Aligned_cols=89  Identities=24%  Similarity=0.296  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ......++.....  +..+||+|||.|..+..-    |...++|.|++...+..+++.         .......+|+..+
T Consensus        33 Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~----p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~   97 (293)
T KOG1331|consen   33 WPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVN----PLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKL   97 (293)
T ss_pred             cHHHHHHHhccCC--cceeeecccCCcccCcCC----CcceeeecchhhhhccccccC---------CCceeehhhhhcC
Confidence            3333444444443  889999999999544321    456899999999999988863         1226789999999


Q ss_pred             CCCCCccceEEeccccccCCCccc
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPST  266 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~  266 (288)
                      |+.+.+||.+++..++||+....+
T Consensus        98 p~~~~s~d~~lsiavihhlsT~~R  121 (293)
T KOG1331|consen   98 PFREESFDAALSIAVIHHLSTRER  121 (293)
T ss_pred             CCCCCccccchhhhhhhhhhhHHH
Confidence            999999999999999999976544

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=6.2e-05  Score=64.37  Aligned_cols=47  Identities=15%  Similarity=0.219  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~  223 (288)
                      .+..+|||||..|.++..+++.+....|+|+||++..++.|++.++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            46789999999999999999987667899999999999999998753

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.87  E-value=3.3e-05  Score=70.98  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++..++|+|||.|....+++.... ..++|+|.++..+..+....... + ....-.++.+|+...||+++.||.+.+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~-~-l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKA-Y-LDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHH-H-hhhhcceehhhhhcCCCCccccCcEEEE
Confidence            4577899999999999999988754 58999999999988888776554 1 1233445889999999999999999999


Q ss_pred             cccccCCCccccc
Q 023019          256 AAIHCWSSPSTGV  268 (288)
Q Consensus       256 ~vl~h~~d~~~~l  268 (288)
                      .+.+|.+++..++
T Consensus       186 d~~~~~~~~~~~y  198 (364)
T KOG1269|consen  186 EVVCHAPDLEKVY  198 (364)
T ss_pred             eecccCCcHHHHH
Confidence            9999999998888

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.87  E-value=2.9e-05  Score=65.29  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             hhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q 023019          144 FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (288)
Q Consensus       144 ~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~  222 (288)
                      ..|+.++++...  .||...  ++.+++++...+ ...|-|+|||.+.++..+... .  .|...|+-.           
T Consensus        42 ~~YH~Gfr~Qv~--~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva-----------  103 (219)
T PF05148_consen   42 DIYHEGFRQQVK--KWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA-----------  103 (219)
T ss_dssp             HHHHHHHHHHHC--TSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred             HHHHHHHHHHHh--cCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-----------
Confidence            456677776542  343332  466677766444 568999999999999776532 2  799999854           


Q ss_pred             hcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccC------CCccccc---ceEEEEecC
Q 023019          223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW------SSPSTGV---GVFFQVTLI  277 (288)
Q Consensus       223 ~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~------~d~~~~l---G~lvi~t~~  277 (288)
                             .+-.+..+|+..+|+++++.|+++....|.-.      .+..++|   |.|.|+...
T Consensus       104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             -------SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             -------CCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence                   12236789999999999999999998877643      2333444   888887754

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.85  E-value=0.00015  Score=60.26  Aligned_cols=92  Identities=20%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             HHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          164 KEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       164 ~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      +..+.+..++..  -.+.++||+-+|+|.++.+...+|. ..++.+|.+...+...+++++..+  ...+..++..|+..
T Consensus        28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~  104 (187)
T COG0742          28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALR  104 (187)
T ss_pred             HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHH
Confidence            334566667764  5789999999999999999999987 699999999999999999988761  23678888888874


Q ss_pred             C-CCCC--CccceEEecccc
Q 023019          242 L-PFAS--SSIDAVHAGAAI  258 (288)
Q Consensus       242 l-p~~~--~sfD~V~~~~vl  258 (288)
                      . +-..  +.||+|+.-=-+
T Consensus       105 ~L~~~~~~~~FDlVflDPPy  124 (187)
T COG0742         105 ALKQLGTREPFDLVFLDPPY  124 (187)
T ss_pred             HHHhcCCCCcccEEEeCCCC
Confidence            3 1122  249999985433

>PLN02823 spermine synthase

Probab=97.83  E-value=5.4e-05  Score=69.03  Aligned_cols=79  Identities=15%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      ...+||.||+|.|..++++.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|+.. +....++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            3568999999999999999886544689999999999999999876431 1125789999999875 3444578999998


Q ss_pred             c
Q 023019          255 G  255 (288)
Q Consensus       255 ~  255 (288)
                      .
T Consensus       183 D  183 (336)
T PLN02823        183 D  183 (336)
T ss_pred             c
Confidence            6

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=2.4e-05  Score=73.43  Aligned_cols=73  Identities=14%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .+..+.+++....+..+||+-||||.++..+++...  +|+|+|+++..++.|+++++.++   ..|.+|+++-++++
T Consensus       371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAEDL  443 (534)
T ss_pred             HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhhc
Confidence            356667777877889999999999999999998876  99999999999999999988873   68999999966653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.82  E-value=0.00033  Score=61.78  Aligned_cols=88  Identities=9%  Similarity=0.031  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSID  250 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD  250 (288)
                      ...-+||||.||.|+....+.+..+.  ..|.-.|+|+..++..++.++..+  ...-+.|.++|+.+..   --+-..+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCCC
Confidence            45678999999999988887777654  689999999999999999998872  2333499999987631   1234579


Q ss_pred             eEEeccccccCCCcc
Q 023019          251 AVHAGAAIHCWSSPS  265 (288)
Q Consensus       251 ~V~~~~vl~h~~d~~  265 (288)
                      +++.+..++.++|-+
T Consensus       212 l~iVsGL~ElF~Dn~  226 (311)
T PF12147_consen  212 LAIVSGLYELFPDND  226 (311)
T ss_pred             EEEEecchhhCCcHH
Confidence            999999999999854

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.81  E-value=5.1e-05  Score=64.43  Aligned_cols=92  Identities=14%  Similarity=0.073  Sum_probs=56.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCCCCCEEEEEecCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS  240 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~------~g~~~~~i~~~~~d~~  240 (288)
                      ..+.+.++..+++..+|||||.|.....++-.....+++|||+.+...+.|++.....      -|....++.+..+|+.
T Consensus        32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4455667778899999999999998777765544357999999999888877544321      0233467888889887


Q ss_pred             CCCCCC---CccceEEecccc
Q 023019          241 RLPFAS---SSIDAVHAGAAI  258 (288)
Q Consensus       241 ~lp~~~---~sfD~V~~~~vl  258 (288)
                      +.++..   ...|+|++++..
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~  132 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTC  132 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TT
T ss_pred             ccHhHhhhhcCCCEEEEeccc
Confidence            654221   347999998764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.80  E-value=0.00016  Score=72.42  Aligned_cols=89  Identities=15%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             HHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCC------------------------------------------CC
Q 023019          166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGL------------------------------------------FS  202 (288)
Q Consensus       166 ~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~------------------------------------------~~  202 (288)
                      ...++...+- .++..++|.+||+|.++.+.+....                                          ..
T Consensus       178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~  257 (702)
T PRK11783        178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPS  257 (702)
T ss_pred             HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence            3444443332 3578999999999999988765310                                          12


Q ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC--CCccceEEecc
Q 023019          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGA  256 (288)
Q Consensus       203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~sfD~V~~~~  256 (288)
                      +++|+|+++.+++.|++++... | ....+.+.++|+.+++.+  .++||+|+++-
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~-g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP  311 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRA-G-VAELITFEVKDVADLKNPLPKGPTGLVISNP  311 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHc-C-CCcceEEEeCChhhcccccccCCCCEEEECC
Confidence            6999999999999999999987 2 235689999999987654  35799999973

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.78  E-value=7.4e-05  Score=72.48  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             CCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Q 023019          158 GFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ  222 (288)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~l~~A~~~~~  222 (288)
                      .|++|....+.+.+.+...       ...+|||.|||+|.++..+.+...        ...++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            4677777777777655321       345899999999999988877542        2578999999999999999887


Q ss_pred             hcCCCCCCCEEEEEecCCCC-----CCCCCccceEEecc
Q 023019          223 QESNFPKENFLLVRADISRL-----PFASSSIDAVHAGA  256 (288)
Q Consensus       223 ~~~g~~~~~i~~~~~d~~~l-----p~~~~sfD~V~~~~  256 (288)
                      ..+   ...+.+...|....     .-..+.||+|+++=
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP  120 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP  120 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence            651   12344455553321     11125799999963

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.77  E-value=5.5e-05  Score=62.73  Aligned_cols=92  Identities=21%  Similarity=0.250  Sum_probs=71.2

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +..+-..-.+++|||+|.|+|..+...++.|. ..|+..|+.+...+..+-+.+.+    ...+.+...|...   .+..
T Consensus        71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~  142 (218)
T COG3897          71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPA  142 (218)
T ss_pred             HhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcc
Confidence            33333334689999999999999999999886 58999999998888888877776    4778888887765   4678


Q ss_pred             cceEEeccccccCCCccccc
Q 023019          249 IDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l  268 (288)
                      ||+|++..++..-+...+.+
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~  162 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLI  162 (218)
T ss_pred             eeEEEeeceecCchHHHHHH
Confidence            99999999876544444444

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00012  Score=65.04  Aligned_cols=79  Identities=9%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-CCCEEEEEecCCCC-CCCCCccceEEecc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL-PFASSSIDAVHAGA  256 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-~~~i~~~~~d~~~l-p~~~~sfD~V~~~~  256 (288)
                      .+||-||-|.|..++++.+..+..+++.+|+++..++.+++.+....+.. .+++.++.+|+.+. .-...+||+|+...
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999999877899999999999999999987663222 48899999998754 22234899999854


Q ss_pred             c
Q 023019          257 A  257 (288)
Q Consensus       257 v  257 (288)
                      .
T Consensus       158 t  158 (282)
T COG0421         158 T  158 (282)
T ss_pred             C
Confidence            4

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.75  E-value=0.00011  Score=63.53  Aligned_cols=94  Identities=12%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ++.+...+.  +..+|+|||||.-.++..+....+...++|+|++..+++.....+...    .........|+..-+ +
T Consensus        96 Y~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~  168 (251)
T PF07091_consen   96 YDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-P  168 (251)
T ss_dssp             HHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-T
T ss_pred             HHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-C
Confidence            344444333  378999999999999988887776779999999999999999988776    467778888887654 3


Q ss_pred             CCccceEEeccccccCCCccc
Q 023019          246 SSSIDAVHAGAAIHCWSSPST  266 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~  266 (288)
                      ....|+.+..-+++.+....+
T Consensus       169 ~~~~DlaLllK~lp~le~q~~  189 (251)
T PF07091_consen  169 KEPADLALLLKTLPCLERQRR  189 (251)
T ss_dssp             TSEESEEEEET-HHHHHHHST
T ss_pred             CCCcchhhHHHHHHHHHHHhc
Confidence            567999999998888765444

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.73  E-value=2.8e-05  Score=65.51  Aligned_cols=91  Identities=23%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             CcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC
Q 023019          161 GPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~  239 (288)
                      .|+.+.+.+....... ....|+|.-||-|.....++.+++  .|+++|+++.-+..|+.+++-. |++. +++|++||+
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI~~-rItFI~GD~  152 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GVPD-RITFICGDF  152 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cCCc-eeEEEechH
Confidence            4555545554433211 466899999999999999999998  9999999999999999999988 5555 999999998


Q ss_pred             CCC----CCCCCccceEEec
Q 023019          240 SRL----PFASSSIDAVHAG  255 (288)
Q Consensus       240 ~~l----p~~~~sfD~V~~~  255 (288)
                      .++    .+....+|+|+.+
T Consensus       153 ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen  153 LDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             HHHHHHHhhhhheeeeeecC
Confidence            754    3433345566654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.73  E-value=4.9e-05  Score=62.58  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .+.+.|+|.|+|.++...++...  +|++++.++...+.|.++++..+   ..++.++.+|+....|  ...|+|+|-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHH
Confidence            46899999999999999988865  99999999999999999976552   6789999999999888  467898873

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.73  E-value=0.00032  Score=66.80  Aligned_cols=78  Identities=17%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccce
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDA  251 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~  251 (288)
                      .+.++.+|||+++|.|.=+..+++.. ..+.+++.|+++..++..+++++..+   ..++.+...|...+. ...+.||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence            56789999999999999888888764 34689999999999999999999883   467888888887653 23467999


Q ss_pred             EEe
Q 023019          252 VHA  254 (288)
Q Consensus       252 V~~  254 (288)
                      |+.
T Consensus       187 ILv  189 (470)
T PRK11933        187 ILL  189 (470)
T ss_pred             EEE
Confidence            995

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00031  Score=59.15  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  246 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~  246 (288)
                      .++..|+|+|+..|.|++.+++.. ....|+|+|+.+              ..+..++.++++|+..-+        +..
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p--------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP--------------MKPIPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc--------------cccCCCceEEeeeccCccHHHHHHHHcCC
Confidence            458999999999999999999884 445699999987              223567999999998643        344


Q ss_pred             CccceEEecccc----ccCCCcccc--------------c---ceEEEEecCcccHHHHHh
Q 023019          247 SSIDAVHAGAAI----HCWSSPSTG--------------V---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       247 ~sfD~V~~~~vl----~h~~d~~~~--------------l---G~lvi~t~~~~~l~el~~  286 (288)
                      ..+|+|++-..-    ++.-|....              |   |.|++..|..+...++..
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~  170 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK  170 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH
Confidence            557999974432    111111111              1   999999998877776654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.68  E-value=0.00029  Score=60.03  Aligned_cols=77  Identities=17%  Similarity=0.103  Sum_probs=62.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      +.+++|||+|.|.=+..++-..++.+++-+|....-+...++.....   ...++.++++.++++.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            58999999999999999887778889999999998777777665555   256799999999988632222999999664

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.67  E-value=0.00092  Score=60.56  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHH-hcCCCCCCCEEEEEecCCC----CCC--C
Q 023019          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLLVRADISR----LPF--A  245 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~-~~~g~~~~~i~~~~~d~~~----lp~--~  245 (288)
                      ++..|+|+|||+|.=...|.+.    +....++++|+|..+++.+.+++. ..  .+...+.-+++|..+    ++-  .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~--~p~l~v~~l~gdy~~~l~~l~~~~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN--FSHVRCAGLLGTYDDGLAWLKRPEN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--CCCeEEEEEEecHHHHHhhcccccc
Confidence            4678999999999865554443    334589999999999999999988 33  122334448888754    221  1


Q ss_pred             CCccceEEe-ccccccCCCcc---------c-cc---ceEEEEecCcccHHHHHhh
Q 023019          246 SSSIDAVHA-GAAIHCWSSPS---------T-GV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       246 ~~sfD~V~~-~~vl~h~~d~~---------~-~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      .....+++. ..+|.+++..+         + .+   |.|+++.=.......|..+
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~A  209 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRA  209 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHH
Confidence            233455555 45888876543         1 23   6666665444444444443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.62  E-value=0.00036  Score=63.13  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.++|||||++|.++..+.++|.  +|++||..+ |.....    .     ..++....+|......+.+.+|.++|-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~----~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM----D-----TGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh----C-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            5689999999999999999999987  999999655 322222    1     578999999887654336789999996


Q ss_pred             cc
Q 023019          256 AA  257 (288)
Q Consensus       256 ~v  257 (288)
                      .+
T Consensus       278 mv  279 (357)
T PRK11760        278 MV  279 (357)
T ss_pred             cc
Confidence            65

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.61  E-value=0.00063  Score=52.85  Aligned_cols=94  Identities=26%  Similarity=0.374  Sum_probs=62.7

Q ss_pred             EEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCC-EEEEEecCCC--CCCCC-CccceEEec
Q 023019          181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG  255 (288)
Q Consensus       181 VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~-i~~~~~d~~~--lp~~~-~sfD~V~~~  255 (288)
                      ++|+|||+|... .+...... ..++|+|+++.++..++......    ... +.+..+|...  +++.. ..||++ ..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence            999999999966 33333221 37999999999999865543221    112 6788888876  78877 589999 55


Q ss_pred             cccccCCCccccc----------ceEEEEecCccc
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      ....+..++...+          |.+++.......
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            4444433333333          778887776544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.54  E-value=0.0003  Score=59.77  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEecc
Q 023019          181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGA  256 (288)
Q Consensus       181 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~~  256 (288)
                      |.||||-.|++..+|.+.+...+++++|+++.-++.|++++...  ....++.+..+|... ++. ....|.|+..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEEec
Confidence            68999999999999999987678999999999999999999987  245789999999654 432 22367777654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.53  E-value=6e-05  Score=64.16  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS  247 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~  247 (288)
                      ....+...|.+|||...|-|+.+....++|. .+|+.+|-+++.++.|.-+-=.. +.....+.++.+|+.++  .|+|.
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~  204 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE  204 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence            4455666799999999999999999999986 69999999999999987642111 12234678999998765  58899


Q ss_pred             ccceEEe
Q 023019          248 SIDAVHA  254 (288)
Q Consensus       248 sfD~V~~  254 (288)
                      +||+|+.
T Consensus       205 sfDaIiH  211 (287)
T COG2521         205 SFDAIIH  211 (287)
T ss_pred             ccceEee
Confidence            9999986

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.50  E-value=0.00012  Score=65.65  Aligned_cols=99  Identities=17%  Similarity=0.308  Sum_probs=72.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      .+.+++.+.+.+++.+||.--|.|..+..+.+..++++++|+|.++.+++.|++++...    ..++.++.+++.++.  
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence            35667777788899999999999999999999877789999999999999999987765    578999999988753  


Q ss_pred             ---C-CCCccceEEecc--ccccCCCccccc
Q 023019          244 ---F-ASSSIDAVHAGA--AIHCWSSPSTGV  268 (288)
Q Consensus       244 ---~-~~~sfD~V~~~~--vl~h~~d~~~~l  268 (288)
                         . ....+|.|+.-.  ..+++.++++-+
T Consensus        85 l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGF  115 (310)
T PF01795_consen   85 LKELNGINKVDGILFDLGVSSMQLDDPERGF  115 (310)
T ss_dssp             HHHTTTTS-EEEEEEE-S--HHHHHTGGGSS
T ss_pred             HHHccCCCccCEEEEccccCHHHhCCCCCCC
Confidence               2 346899999854  445677776655

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.50  E-value=0.00068  Score=59.81  Aligned_cols=90  Identities=10%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             CCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHh-----c--------------CCC--
Q 023019          178 GGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ-----E--------------SNF--  227 (288)
Q Consensus       178 ~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~l~~A~~~~~~-----~--------------~g~--  227 (288)
                      .-+|+-+||+||.    ++..+.+.++     ..+|+|+|+|..+++.|+.-.-.     .              ++.  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6789999999994    4445555542     47999999999999999853211     0              000  


Q ss_pred             -----CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCcccc
Q 023019          228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG  267 (288)
Q Consensus       228 -----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~  267 (288)
                           .-..|.|.+.|+..-++..+.||+|+|.+||-++..+.+.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~  221 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQE  221 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHH
Confidence                 0134677778877665456789999999999999776443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.49  E-value=0.00011  Score=61.07  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC------C--CC--
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P--FA--  245 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l------p--~~--  245 (288)
                      .+.+|||+||++|.|+..+.+++ +..+|+|+|+.+.          .    +..++..+++|+.+.      .  +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------D----PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------c----cccceeeeecccchhhHHHhhhhhcccc
Confidence            46899999999999999999997 4469999999874          0    124555556665321      1  11  


Q ss_pred             CCccceEEeccccccCCCc----cccc-----------------ceEEEEecCcccHHHHH
Q 023019          246 SSSIDAVHAGAAIHCWSSP----STGV-----------------GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~----~~~l-----------------G~lvi~t~~~~~l~el~  285 (288)
                      .+.||+|++-.+.....++    ...+                 |.+++..+......++.
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~  149 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELI  149 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHH
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHH
Confidence            2689999997744332221    1000                 77999888764444444

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00091  Score=62.83  Aligned_cols=84  Identities=19%  Similarity=0.319  Sum_probs=72.2

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~  259 (288)
                      ++|.+|||.-.+...+.+.|. ..|+-+|+|+-.++....+....    .....+...|...+.|++++||+|+.-+.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence            899999999999999998876 58999999999998888775433    5778999999999999999999999999999


Q ss_pred             cCCCccccc
Q 023019          260 CWSSPSTGV  268 (288)
Q Consensus       260 h~~d~~~~l  268 (288)
                      ++-.++..+
T Consensus       126 al~~de~a~  134 (482)
T KOG2352|consen  126 ALFEDEDAL  134 (482)
T ss_pred             cccCCchhh
Confidence            875544433

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.48  E-value=5.1e-05  Score=52.69  Aligned_cols=47  Identities=30%  Similarity=0.565  Sum_probs=31.7

Q ss_pred             ccCCceeCCCCCCCCcccCC-------------------CCCccccccCCceecCCCCcccccCCC
Q 023019           67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT  113 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~-------------------~~~~~~~i~~~~l~C~~C~~~~~~~~g  113 (288)
                      ..+++++||.|+++|.+...                   ...-...+..+.+.|++|++.|++.+|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            45789999999998811000                   000012367899999999999999876

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.39  E-value=0.00097  Score=57.74  Aligned_cols=126  Identities=17%  Similarity=0.294  Sum_probs=78.1

Q ss_pred             CcCcCCchhhhhhcCcchhh-hhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCC
Q 023019          125 DYGELMSPATEFFRMPFMSF-IYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFS  202 (288)
Q Consensus       125 ~y~~~~~~~~~~~~~~~~s~-~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~  202 (288)
                      -|......+..+|....-.+ .|+.+++....  .|+.  .-++.+++++... ....|-|+|||.+.++.   ....  
T Consensus       130 LYt~~s~~A~~lfkedp~afdlYH~gfr~QV~--kWP~--nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~--  200 (325)
T KOG3045|consen  130 LYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVK--KWPE--NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH--  200 (325)
T ss_pred             hccCCcHHHHHHHhcCcHHHHHHHHHHHHHHH--hCCC--ChHHHHHHHHHhCcCceEEEecccchhhhhh---cccc--
Confidence            34444444444554443332 46666665432  2222  2235555655433 35679999999998766   2222  


Q ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccccc------CCCccccc---ceEEE
Q 023019          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC------WSSPSTGV---GVFFQ  273 (288)
Q Consensus       203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h------~~d~~~~l---G~lvi  273 (288)
                      .|+..|+-.                  .+-+++.+|+.++|+++++.|+++....|.-      +.+..++|   |.+.|
T Consensus       201 kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  201 KVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             ceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence            799999844                  3455788999999999999999998777652      22233444   77777


Q ss_pred             EecC
Q 023019          274 VTLI  277 (288)
Q Consensus       274 ~t~~  277 (288)
                      +...
T Consensus       263 AEv~  266 (325)
T KOG3045|consen  263 AEVK  266 (325)
T ss_pred             Eehh
Confidence            7653

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.32  E-value=0.00085  Score=58.67  Aligned_cols=81  Identities=9%  Similarity=0.118  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-CCCCC-ccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~-sfD~V~  253 (288)
                      ...+||-||-|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|+... .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            4789999999999999999887655699999999999999999876531 11257899999998642 22233 899999


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      .-..
T Consensus       156 ~D~~  159 (246)
T PF01564_consen  156 VDLT  159 (246)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            8443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.27  E-value=0.0008  Score=60.75  Aligned_cols=87  Identities=13%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      ...+|+|.|.|..+..+...++  +|-|++++...+..++..+.       +++..+-+|...- .|  +-|+|++-++|
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence            6799999999999999999877  89999999998888887643       3477777886543 22  34699999999


Q ss_pred             ccCCCccccc------------ceEEEEecC
Q 023019          259 HCWSSPSTGV------------GVFFQVTLI  277 (288)
Q Consensus       259 ~h~~d~~~~l------------G~lvi~t~~  277 (288)
                      |||.|.+-+-            |.+++....
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            9998864332            888887763

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.20  E-value=0.0024  Score=54.12  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-  245 (288)
                      +.+.+++..  +.++.||||-.|++..++.+.++...+++.|++++-++.|.+++...  .....++...+|... ++. 
T Consensus         8 ~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~-~l~~   82 (226)
T COG2384           8 TTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLA-VLEL   82 (226)
T ss_pred             HHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCcc-ccCc
Confidence            445556654  55699999999999999999998889999999999999999999886  346788888888843 333 


Q ss_pred             CCccceEEecc
Q 023019          246 SSSIDAVHAGA  256 (288)
Q Consensus       246 ~~sfD~V~~~~  256 (288)
                      +..+|+|+..+
T Consensus        83 ~d~~d~ivIAG   93 (226)
T COG2384          83 EDEIDVIVIAG   93 (226)
T ss_pred             cCCcCEEEEeC
Confidence            34788888754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.19  E-value=0.00063  Score=57.62  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCccceEEec
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG  255 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~sfD~V~~~  255 (288)
                      .++|||||=+..+...-  .+. -.|+.||+++                  ..-.+.+.|+.+.|.+   +++||+|.++
T Consensus        53 lrlLEVGals~~N~~s~--~~~-fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST--SGW-FDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCcccc--cCc-eeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence            68999999865433322  222 3799999976                  1233578899887763   6789999999


Q ss_pred             cccccCCCccccc-------------ce-----EEEEecCc
Q 023019          256 AAIHCWSSPSTGV-------------GV-----FFQVTLII  278 (288)
Q Consensus       256 ~vl~h~~d~~~~l-------------G~-----lvi~t~~~  278 (288)
                      .||.++|+|..--             |.     +++.++.+
T Consensus       112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            9999999986533             77     88877654

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.13  E-value=0.0033  Score=53.63  Aligned_cols=89  Identities=10%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .+..++...++...++++||||.=||+-+..++...| .++|+++|+++...+.+.+..+..+  ....++++++++.+.
T Consensus        60 d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~es  137 (237)
T KOG1663|consen   60 DKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALES  137 (237)
T ss_pred             HHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhh
Confidence            3344444444545578999999999998888887754 5799999999999999988888762  467899999998642


Q ss_pred             ------CCCCCccceEEe
Q 023019          243 ------PFASSSIDAVHA  254 (288)
Q Consensus       243 ------p~~~~sfD~V~~  254 (288)
                            ..+.++||+++.
T Consensus       138 Ld~l~~~~~~~tfDfaFv  155 (237)
T KOG1663|consen  138 LDELLADGESGTFDFAFV  155 (237)
T ss_pred             HHHHHhcCCCCceeEEEE
Confidence                  235689999997

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.10  E-value=0.0015  Score=60.47  Aligned_cols=76  Identities=20%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~  255 (288)
                      +.+|||+.||+|..+..++.+.. -..|+++|+++..++.++++++..+   ..++.++++|+..+-. ....||+|...
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            46899999999999999988731 2589999999999999999998762   3468889999875521 23579999884


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       122 P  122 (374)
T TIGR00308       122 P  122 (374)
T ss_pred             C
Confidence            3

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.07  E-value=0.0043  Score=54.48  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=54.2

Q ss_pred             HHHhhcCCC-CCCeEEEEcCc--c-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          168 LMKGYLKPV-LGGNIIDASCG--S-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       168 ~l~~~l~~~-~~~~VLDiGcG--~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      +..+++... .=...||||||  | |..-....+..|.++|+.+|+++-.+..++..+....   .....++++|+.+..
T Consensus        58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~  134 (267)
T PF04672_consen   58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPE  134 (267)
T ss_dssp             HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HH
T ss_pred             HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHH
Confidence            344454433 23569999999  3 4444444444788899999999999999999877651   123889999997632


Q ss_pred             -----------CCCCccceEEeccccccCCCcc
Q 023019          244 -----------FASSSIDAVHAGAAIHCWSSPS  265 (288)
Q Consensus       244 -----------~~~~sfD~V~~~~vl~h~~d~~  265 (288)
                                 +.-..-=.|+...+|||++|.+
T Consensus       135 ~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~  167 (267)
T PF04672_consen  135 AILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDD  167 (267)
T ss_dssp             HHHCSHHHHCC--TTS--EEEECT-GGGS-CGC
T ss_pred             HHhcCHHHHhcCCCCCCeeeeeeeeeccCCCcc
Confidence                       1112233788899999998743

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.06  E-value=0.0056  Score=54.39  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=79.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-  243 (288)
                      ....++.|.+.+++..||.--|.|..+..+.+.++ .++++|+|.++.+++.|++++...    ..++.++++.+.++. 
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~   87 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAE   87 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHH
Confidence            45667788888899999999999999999999875 357999999999999999998886    578999999887653 


Q ss_pred             ----CCCCccceEEeccccc--cCCCccccc
Q 023019          244 ----FASSSIDAVHAGAAIH--CWSSPSTGV  268 (288)
Q Consensus       244 ----~~~~sfD~V~~~~vl~--h~~d~~~~l  268 (288)
                          ...+.+|.|+.-..+.  ++.++++-+
T Consensus        88 ~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGF  118 (314)
T COG0275          88 ALKELGIGKVDGILLDLGVSSPQLDDAERGF  118 (314)
T ss_pred             HHHhcCCCceeEEEEeccCCccccCCCcCCc
Confidence                2346889999865443  455555544

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.05  E-value=0.003  Score=56.46  Aligned_cols=82  Identities=12%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-----CCCCCCccceE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDAV  252 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~sfD~V  252 (288)
                      ..++||||+|....-..|..+..+++++|+|+++..++.|+++++.. .....+|.++...-..     +-..+..||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-PNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcCCccccchhhhcccceeeEE
Confidence            45799999998754333322212359999999999999999999875 1346778887654221     22234689999


Q ss_pred             Eecccccc
Q 023019          253 HAGAAIHC  260 (288)
Q Consensus       253 ~~~~vl~h  260 (288)
                      .|+=-++.
T Consensus       182 mCNPPFy~  189 (299)
T PF05971_consen  182 MCNPPFYS  189 (299)
T ss_dssp             EE-----S
T ss_pred             ecCCcccc
Confidence            99766554

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.012  Score=54.36  Aligned_cols=84  Identities=25%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      .....+.+.+|.+|||+.++.|.=+..+++...+  ..|+++|.++.-++..+++++..|   ..++..+..|...++  
T Consensus       147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~  223 (355)
T COG0144         147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAEL  223 (355)
T ss_pred             HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEeccccccccc
Confidence            3345678889999999999999988888877543  457999999999999999999983   556788888877554  


Q ss_pred             -CCCCccceEEe
Q 023019          244 -FASSSIDAVHA  254 (288)
Q Consensus       244 -~~~~sfD~V~~  254 (288)
                       ...+.||.|+.
T Consensus       224 ~~~~~~fD~iLl  235 (355)
T COG0144         224 LPGGEKFDRILL  235 (355)
T ss_pred             ccccCcCcEEEE
Confidence             22235999997

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.02  E-value=0.00014  Score=60.83  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      .+.++||+|+|.|..+..++....  +|++.|.|..|....+++        .-++- -.-+..+   .+-+||+|.|.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynVl-~~~ew~~---t~~k~dli~clN  177 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNVL-TEIEWLQ---TDVKLDLILCLN  177 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCcee-eehhhhh---cCceeehHHHHH
Confidence            357899999999999999988765  899999999998888765        12221 1111222   234699999999


Q ss_pred             ccccCCCccccc-----------ceEEEEecC
Q 023019          257 AIHCWSSPSTGV-----------GVFFQVTLI  277 (288)
Q Consensus       257 vl~h~~d~~~~l-----------G~lvi~t~~  277 (288)
                      +|.--.+|-+.|           |+++++...
T Consensus       178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            998777777766           887776643

>PRK00536 speE spermidine synthase; Provisional

Probab=96.98  E-value=0.0036  Score=55.11  Aligned_cols=76  Identities=11%  Similarity=-0.003  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      +..++||=||.|.|..++++.+...  +|+-+|+++.+++.+++.+.... +...++++++.. +.+  -..++||+|+.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv  145 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC  145 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence            3468999999999999999998753  99999999999999999765431 234577777752 221  12368999998


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      -.
T Consensus       146 Ds  147 (262)
T PRK00536        146 LQ  147 (262)
T ss_pred             cC
Confidence            63

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.96  E-value=0.004  Score=51.50  Aligned_cols=97  Identities=14%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCC--------CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA  245 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~l--------p~~  245 (288)
                      .++.+|||+||..|.++....++ +|++-|.|+|+-.-              .+..++.++.+ |+.+.        .++
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhCC
Confidence            45999999999999999999888 58899999998441              12455666666 55442        135


Q ss_pred             CCccceEEecccccc----CCCccccc-----------------ceEEEEecCcccHHHHHh
Q 023019          246 SSSIDAVHAGAAIHC----WSSPSTGV-----------------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h----~~d~~~~l-----------------G~lvi~t~~~~~l~el~~  286 (288)
                      +...|+|++...-.-    +.|-.+.+                 |.|+.-.+..+...+|.+
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r  195 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQR  195 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHH
Confidence            677898888543211    01111100                 999999998877776654

>PRK10742 putative methyltransferase; Provisional

Probab=96.90  E-value=0.0053  Score=53.35  Aligned_cols=92  Identities=14%  Similarity=0.041  Sum_probs=68.8

Q ss_pred             HHHHhhcCCCCCC--eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CC-CCCCEEEEEec
Q 023019          167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD  238 (288)
Q Consensus       167 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-----g~-~~~~i~~~~~d  238 (288)
                      +.+.+.++.+++.  +|||.-+|.|..+..++.+|.  +|+++|-++.+....++.++...     +. ...++.++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            4566666666666  899999999999999999987  79999999999988888877620     00 01468888888


Q ss_pred             CCCC-CCCCCccceEEecccccc
Q 023019          239 ISRL-PFASSSIDAVHAGAAIHC  260 (288)
Q Consensus       239 ~~~l-p~~~~sfD~V~~~~vl~h  260 (288)
                      ..+. .-...+||+|+.-=.+.|
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCC
Confidence            7643 212347999998665555

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.79  E-value=0.0023  Score=53.52  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCCCEEEEEecCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADIS  240 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~----g~~~~~i~~~~~d~~  240 (288)
                      ...+.|||||.|.++..++..+|.-.++|+||-...-++.++++...+    +....++.+.+.++.
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam  127 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM  127 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence            457999999999999999999999999999999999999999987542    122456666666655

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0044  Score=49.27  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .+.++....++...+.++.+|+|.|.|+.....++.+. ...+|+|+++-.+.+++-..-..  .......|.+-|+...
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHH--hcccchhhhhhhhhhc
Confidence            34467777788777778999999999999999998873 47899999999988887665444  2356788889999887


Q ss_pred             CCCCCccceEEeccccccCCCccccc
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      .+.+-.+-+|+...  .-++|.+.-|
T Consensus       135 dl~dy~~vviFgae--s~m~dLe~KL  158 (199)
T KOG4058|consen  135 DLRDYRNVVIFGAE--SVMPDLEDKL  158 (199)
T ss_pred             cccccceEEEeehH--HHHhhhHHHH
Confidence            77665555555433  3344444333

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.68  E-value=0.0086  Score=57.60  Aligned_cols=117  Identities=20%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             cchhhhhHHHHhhhh---hc--CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC----CCEEEEEeCC
Q 023019          140 PFMSFIYERGWRQNF---VW--GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS  210 (288)
Q Consensus       140 ~~~s~~~~~~wr~~~---~~--~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s  210 (288)
                      ..+.-.|+...++..   -.  +.+++|....+.+.+.+.+.+..+|.|-.||+|.++....+...    ...++|.|++
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            455556665544432   12  45899999999999999877788999999999998877766531    2579999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-----CCCccceEEecccc
Q 023019          211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----ASSSIDAVHAGAAI  258 (288)
Q Consensus       211 ~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~vl  258 (288)
                      +.....|+-++-.+ |... .+....+|...-|.     ..+.||.|+++--+
T Consensus       224 ~~t~~l~~mN~~lh-gi~~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf  274 (489)
T COG0286         224 DTTYRLAKMNLILH-GIEG-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF  274 (489)
T ss_pred             HHHHHHHHHHHHHh-CCCc-cccccccccccCCcccccCCccceeEEEeCCCC
Confidence            99999999998777 3322 45666666554442     33679999986433

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.63  E-value=0.009  Score=52.90  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             CCeEEEEcCccchHHH-HHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~-~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      ..+|+=||+|.=.++. .+++. +....++++|+++..++.+++.++.. .....++.++.+|....+..-..||+|+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence            3599999999866554 44433 45568999999999999999887732 123578999999998877666789999987


Q ss_pred             cccc
Q 023019          256 AAIH  259 (288)
Q Consensus       256 ~vl~  259 (288)
                      ....
T Consensus       200 alVg  203 (276)
T PF03059_consen  200 ALVG  203 (276)
T ss_dssp             TT-S
T ss_pred             hhcc
Confidence            6654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.35  E-value=0.021  Score=52.05  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH--Hhc--CCCCCCCEEEEEecCCCC-CCCCCccceE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV--QQE--SNFPKENFLLVRADISRL-PFASSSIDAV  252 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~--~~~--~g~~~~~i~~~~~d~~~l-p~~~~sfD~V  252 (288)
                      ..+||-+|.|.|..++.+.+.-...+++-+|++|.|++.++++.  ...  +....++++++..|+... .-....||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            56799999999999999988743579999999999999999443  221  123457899999998764 2234589999


Q ss_pred             EeccccccCCCccccc
Q 023019          253 HAGAAIHCWSSPSTGV  268 (288)
Q Consensus       253 ~~~~vl~h~~d~~~~l  268 (288)
                      +.     .++||...-
T Consensus       370 IV-----Dl~DP~tps  380 (508)
T COG4262         370 IV-----DLPDPSTPS  380 (508)
T ss_pred             EE-----eCCCCCCcc
Confidence            87     456665443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.29  E-value=0.011  Score=52.88  Aligned_cols=82  Identities=26%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-CCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS  246 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~~~  246 (288)
                      ...+.+.++..|||+.++.|.=+..+++... .+.+++.|+++.-+...++++++.|   ..++.....|.... + ...
T Consensus        78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~~~  154 (283)
T PF01189_consen   78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKKPE  154 (283)
T ss_dssp             HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHHT
T ss_pred             cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeeccccccccccc
Confidence            4456778899999999999998888887743 5799999999999999999998873   56777777887765 2 223


Q ss_pred             CccceEEe
Q 023019          247 SSIDAVHA  254 (288)
Q Consensus       247 ~sfD~V~~  254 (288)
                      ..||.|+.
T Consensus       155 ~~fd~Vlv  162 (283)
T PF01189_consen  155 SKFDRVLV  162 (283)
T ss_dssp             TTEEEEEE
T ss_pred             cccchhhc
Confidence            46999998

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.20  E-value=0.019  Score=49.56  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             HHHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC------CCEEEEEec
Q 023019          167 ELMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRAD  238 (288)
Q Consensus       167 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~------~~i~~~~~d  238 (288)
                      +.+.+..+.+++  .+|||.-+|-|.-+..++..|.  +|+++|-|+-+....+.-++.......      .+++++.+|
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d  140 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD  140 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence            345555554444  4899999999999999888776  999999999876655543322100012      478999999


Q ss_pred             CCC-CCCCCCccceEEecccccc
Q 023019          239 ISR-LPFASSSIDAVHAGAAIHC  260 (288)
Q Consensus       239 ~~~-lp~~~~sfD~V~~~~vl~h  260 (288)
                      ..+ ++.++.+||+|+.-=.+.+
T Consensus       141 ~~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  141 ALEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCCHCCCHSS--SEEEE--S---
T ss_pred             HHHHHhhcCCCCCEEEECCCCCC
Confidence            886 5556789999999666655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.16  E-value=0.097  Score=44.74  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s  248 (288)
                      +...+|.+||-+|.++|.....+++- ++.+.|+++|.|+...+..-..+++.     .|+.-+.+|+....   .--+.
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~  143 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM  143 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence            44567999999999999999999887 55789999999996554444333332     78888999997531   11247


Q ss_pred             cceEEecc
Q 023019          249 IDAVHAGA  256 (288)
Q Consensus       249 fD~V~~~~  256 (288)
                      .|+|++.-
T Consensus       144 VDvI~~DV  151 (229)
T PF01269_consen  144 VDVIFQDV  151 (229)
T ss_dssp             EEEEEEE-
T ss_pred             ccEEEecC
Confidence            89988743

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PHA01634 hypothetical protein

Probab=96.11  E-value=0.047  Score=42.41  Aligned_cols=47  Identities=21%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      .+.+|+|||.+-|.-+.++.-+|. ..|+++|+++...+..+++.+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence            478999999999999999999987 69999999999999999976654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.07  E-value=0.02  Score=48.60  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~  219 (288)
                      -|....+.++.... .+++.|||.=||+|..+.+..+.+-  +.+|+|+++..++.|++
T Consensus       176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            34555677776654 4589999999999999999999887  99999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.06  E-value=0.025  Score=50.48  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~  223 (288)
                      ....+.++.... .+|+.|||-=+|+|..+.+..+.+-  +.+|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            444666666554 4699999999999999999998886  999999999999999999754

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.05  E-value=0.016  Score=50.82  Aligned_cols=80  Identities=11%  Similarity=0.061  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHhcC---CCCCCCEEEEEecCCCCCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~l~~A~~~~~~~~---g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+|+|+|.|+|.++..+.+...        ..+++-+|+|+.+.+.-++++....   .....++.+ ..++.+.|   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            46899999999999988877521        2589999999999988888876520   001345666 34555554   


Q ss_pred             CccceEEeccccccCC
Q 023019          247 SSIDAVHAGAAIHCWS  262 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~  262 (288)
                       ..-+|+++.++.-+|
T Consensus        95 -~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 -FPGFIIANELFDALP  109 (252)
T ss_dssp             -CCEEEEEESSGGGS-
T ss_pred             -CCEEEEEeeehhcCc
Confidence             456888888887775

; PDB: 4F3N_A 1ZKD_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.94  E-value=0.009  Score=44.89  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s  210 (288)
                      +....+|||||+|.+.-.|...|.  .-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            455799999999999999999998  88999963

; GO: 0008168 methyltransferase activity

>PRK13699 putative methylase; Provisional

Probab=95.69  E-value=0.052  Score=46.86  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.++.... .+|+.|||--||+|..+.+..+.+-  +.+|+|+++...+.|.++++..
T Consensus       148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence            34444566665444 4688999999999999999998876  9999999999999999998664

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.60  E-value=0.081  Score=46.78  Aligned_cols=81  Identities=19%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh---cC------------------------C---
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES------------------------N---  226 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~---~~------------------------g---  226 (288)
                      ...+||--|||-|+++..++..|.  .+.|.|.|--|+-..+-.+..   ..                        .   
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            457899999999999999999998  999999999997665544321   00                        0   


Q ss_pred             -------CCCCCEEEEEecCCCCCCCC---CccceEEeccccc
Q 023019          227 -------FPKENFLLVRADISRLPFAS---SSIDAVHAGAAIH  259 (288)
Q Consensus       227 -------~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~vl~  259 (288)
                             ....++.+..||+.++..++   ++||+|+..+-|.
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID  176 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID  176 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence                   01235677778887765444   7999999876443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.42  E-value=0.046  Score=47.07  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE-EEEecCCCCC---CCCCccce
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP---FASSSIDA  251 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~-~~~~d~~~lp---~~~~sfD~  251 (288)
                      .++..+||||+.||.|+..+.++|. ..|+++|..-+++.+--+.        .+++. +...++..+.   +. +..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCCe
Confidence            4688999999999999999999986 5999999998877665443        34544 3444555442   22 35678


Q ss_pred             EEeccccc
Q 023019          252 VHAGAAIH  259 (288)
Q Consensus       252 V~~~~vl~  259 (288)
                      +++--++-
T Consensus       148 ~v~DvSFI  155 (245)
T COG1189         148 IVIDVSFI  155 (245)
T ss_pred             EEEEeehh
Confidence            88755543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.41  E-value=0.073  Score=45.17  Aligned_cols=77  Identities=14%  Similarity=0.305  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      .+|++||+||-|-|...-.++++.+ .+-+-+|..+..++..++..-..    ..++..+.+-.++.  .++++.||.|+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccccccCcceeE
Confidence            4589999999999999999888866 56778999999999888763322    46788888877653  36788999998


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      ----
T Consensus       175 yDTy  178 (271)
T KOG1709|consen  175 YDTY  178 (271)
T ss_pred             eech
Confidence            7443

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.04  E-value=0.22  Score=46.38  Aligned_cols=78  Identities=26%  Similarity=0.271  Sum_probs=61.0

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s  248 (288)
                      +.+.+|.+|||..+..|.=+.+++.. ...+.|++.|.+.+-++..+.++...|   ..+......|..++|   ++. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence            45778999999999988755555443 223589999999999999999999883   567777888887765   444 8


Q ss_pred             cceEEe
Q 023019          249 IDAVHA  254 (288)
Q Consensus       249 fD~V~~  254 (288)
                      ||-|+.
T Consensus       313 fDRVLL  318 (460)
T KOG1122|consen  313 FDRVLL  318 (460)
T ss_pred             cceeee
Confidence            999986

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.00  E-value=0.024  Score=51.19  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHH-------HHHHHHhcCCCCCCCEEEEEecCCCCCCC-
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-------CYEFVQQESNFPKENFLLVRADISRLPFA-  245 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~-------A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-  245 (288)
                      ...+|+.|+|-=.|||.++...+..|.  -|+|.||+-.|+..       .+.++++. |....-+.+..+|...-|+. 
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDVLTADFSNPPLRS  281 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhheeeecccCcchhh
Confidence            346799999999999999999999887  99999999998873       34566666 33345577889999987764 


Q ss_pred             CCccceEEec
Q 023019          246 SSSIDAVHAG  255 (288)
Q Consensus       246 ~~sfD~V~~~  255 (288)
                      ...||+|+|.
T Consensus       282 n~~fDaIvcD  291 (421)
T KOG2671|consen  282 NLKFDAIVCD  291 (421)
T ss_pred             cceeeEEEeC
Confidence            4689999993

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.95  E-value=0.082  Score=44.84  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHH
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQ  222 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~  222 (288)
                      +....++....+-++.|-.||.|+++-.+.-..  .-..|+|.|+++++++.|++|+.
T Consensus        41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            444455555556789999999999876664432  12589999999999999999984

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.92  E-value=0.06  Score=50.22  Aligned_cols=61  Identities=15%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ..|||||.|||.++....+.|. -.|+++|.=..|.+.|++...+.  +..++|.++.--..++
T Consensus        68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC--CCccceeeecccccee
Confidence            4599999999999999999986 47999999999999999988775  3456777665444443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.91  E-value=0.091  Score=46.69  Aligned_cols=68  Identities=24%  Similarity=0.327  Sum_probs=52.5

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC--CCccceEEeccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA  257 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~sfD~V~~~~v  257 (288)
                      +++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+..        .. .+.+|+.++...  ...+|+++...-
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999999988875 467899999999988887632        21 566787776532  357999998653

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.0099  Score=48.06  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC--CCCCCCccceE
Q 023019          176 VLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFASSSIDAV  252 (288)
Q Consensus       176 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~--lp~~~~sfD~V  252 (288)
                      -.|.+|||+|.| +|..+..++...+...|...|=++..++..++....+.-..........-+...  ......+||.|
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI  107 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII  107 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence            347889999999 577777777777778999999999999888876433200011222222222221  11234589999


Q ss_pred             EeccccccC---CCccccc-------ceEEEEecCc-ccHHH
Q 023019          253 HAGAAIHCW---SSPSTGV-------GVFFQVTLII-HVVED  283 (288)
Q Consensus       253 ~~~~vl~h~---~d~~~~l-------G~lvi~t~~~-~~l~e  283 (288)
                      ++...+..-   .+..+.+       |.-++..+.. ++|..
T Consensus       108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~k  149 (201)
T KOG3201|consen  108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQK  149 (201)
T ss_pred             EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHH
Confidence            998876421   1121221       7766666644 44444

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=94.76  E-value=0.22  Score=50.06  Aligned_cols=99  Identities=9%  Similarity=-0.039  Sum_probs=65.1

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCCCCCEEEEEec---CCCCCCCCCccceEEe
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRAD---ISRLPFASSSIDAVHA  254 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~-~~~~~g~~~~~i~~~~~d---~~~lp~~~~sfD~V~~  254 (288)
                      ..+.-.|.||=.....+.+.+|..+++-+|-+...-+.+-+. +...   ....+++..|.   +..+.|++=+-=.|+.
T Consensus       484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~  560 (730)
T COG1198         484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD  560 (730)
T ss_pred             CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence            357788999999999999999999999999887664432222 2222   12334444443   2234455555556666


Q ss_pred             ccccccCCCccccc-------------------ceEEEEecCccc
Q 023019          255 GAAIHCWSSPSTGV-------------------GVFFQVTLIIHV  280 (288)
Q Consensus       255 ~~vl~h~~d~~~~l-------------------G~lvi~t~~~~~  280 (288)
                      ....-+.+|....-                   |.+++-|+.+++
T Consensus       561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h  605 (730)
T COG1198         561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH  605 (730)
T ss_pred             chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence            77777777754332                   899999998874

>PRK00420 hypothetical protein; Validated

Probab=93.99  E-value=0.038  Score=42.02  Aligned_cols=31  Identities=26%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCC
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  112 (288)
                      -.||.|+.+|...          ..+..+|+.|+..+....
T Consensus        24 ~~CP~Cg~pLf~l----------k~g~~~Cp~Cg~~~~v~~   54 (112)
T PRK00420         24 KHCPVCGLPLFEL----------KDGEVVCPVHGKVYIVKS   54 (112)
T ss_pred             CCCCCCCCcceec----------CCCceECCCCCCeeeecc
Confidence            3499999999862          246899999998766543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.90  E-value=0.33  Score=42.33  Aligned_cols=102  Identities=16%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH--HHHhcCCCCCCCEEEEEecCCCC---CCCCCc-cc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESNFPKENFLLVRADISRL---PFASSS-ID  250 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~--~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s-fD  250 (288)
                      ...+|||+|.|+|..+..++.... ..|.-.|+..-+......  .-....+.....+....-+..+.   .+.... ||
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc-ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            366799999999977777776432 488888876644332222  11100000112333333333322   222233 99


Q ss_pred             eEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          251 AVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      +|++..++.+-..+...+          |.+.+.+...+
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            999999988776665555          76777776654

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.74  E-value=0.63  Score=39.26  Aligned_cols=77  Identities=10%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI  249 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sf  249 (288)
                      +...++.+||=+|..+|.....+++--..+.++++|.|+.+.+..-..+++.     .|+.-+.+|+....   .--+..
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V  146 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV  146 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence            3456799999999999999999998855679999999998766655554443     67778888887431   112457


Q ss_pred             ceEEe
Q 023019          250 DAVHA  254 (288)
Q Consensus       250 D~V~~  254 (288)
                      |+|+.
T Consensus       147 Dviy~  151 (231)
T COG1889         147 DVIYQ  151 (231)
T ss_pred             cEEEE
Confidence            88876

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.70  E-value=0.29  Score=42.09  Aligned_cols=83  Identities=13%  Similarity=0.066  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-----CCCCCCccce
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDA  251 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~sfD~  251 (288)
                      +..++||||.|.--.=..+--+-+..+.+|.|+++..++.|+..+..+. .....+.+.+..=.+     +--.++.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-chhhheeEEeccCccccccccccccceeee
Confidence            4567999998865433333333223499999999999999999887651 112334444432221     1123578999


Q ss_pred             EEecccccc
Q 023019          252 VHAGAAIHC  260 (288)
Q Consensus       252 V~~~~vl~h  260 (288)
                      ++|+--+|-
T Consensus       157 tlCNPPFh~  165 (292)
T COG3129         157 TLCNPPFHD  165 (292)
T ss_pred             EecCCCcch
Confidence            999877763

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=93.42  E-value=1.1  Score=38.73  Aligned_cols=74  Identities=20%  Similarity=0.197  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC-CCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA-SSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~-~~sfD~V~  253 (288)
                      -.|++||=+|=..- .+..++-.+...+|+.+|+++.+++..++.+++.    ..++..+..|+.. +|-. .++||+++
T Consensus        43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred             ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEE
Confidence            35889999984442 3444444455579999999999999999998887    3459999999974 4422 48999999


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      .
T Consensus       118 T  118 (243)
T PF01861_consen  118 T  118 (243)
T ss_dssp             E
T ss_pred             e
Confidence            8

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=0.044  Score=41.43  Aligned_cols=27  Identities=11%  Similarity=0.142  Sum_probs=24.3

Q ss_pred             ccCCceecCCCCcccccCCCeeeeecc
Q 023019           94 AAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (288)
Q Consensus        94 i~~~~l~C~~C~~~~~~~~g~~~~~~~  120 (288)
                      +.++.+.|+.||+.|++.+|+++++..
T Consensus        94 v~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   94 VIEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             hccceEecCCCCcEeecccCCcccccC
Confidence            567899999999999999999999753

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.10  E-value=0.15  Score=44.84  Aligned_cols=102  Identities=18%  Similarity=0.275  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------------CCCC----------C
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPK----------E  230 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------------g~~~----------~  230 (288)
                      .+|.++||||||.-..-..-+... ..+++..|+++.-.+..++-++..+               |...          .
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            347789999999855432222222 2389999999999887776665431               1000          0


Q ss_pred             CE-EEEEecCCCC-CCCC-----CccceEEeccccccCC-Cccccc-------------ceEEEEecCc
Q 023019          231 NF-LLVRADISRL-PFAS-----SSIDAVHAGAAIHCWS-SPSTGV-------------GVFFQVTLII  278 (288)
Q Consensus       231 ~i-~~~~~d~~~l-p~~~-----~sfD~V~~~~vl~h~~-d~~~~l-------------G~lvi~t~~~  278 (288)
                      .| .++..|.... |+..     ..||+|++.++|+... |.+...             |.|++.....
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            12 3677888754 3333     2599999999999764 443322             7777766543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.08  E-value=0.057  Score=33.65  Aligned_cols=28  Identities=21%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      +.||.|+......+        ...+.+.|+.||.+
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~V   28 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLV   28 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BB
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCE
Confidence            47999999653322        24678999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=92.95  E-value=0.072  Score=34.96  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ++.||.|+..+...+.       ..+..+.|+.||..+-.
T Consensus         2 ~~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV   34 (54)
T TIGR01206         2 QFECPDCGAEIELENP-------ELGELVICDECGAELEV   34 (54)
T ss_pred             ccCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence            3579999998766442       23568899999987755

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=92.34  E-value=0.028  Score=42.01  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             EEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEecc
Q 023019          182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA  256 (288)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~~~  256 (288)
                      ||||+..|..+..+++....   .+++++|+.+. .+.+++.+++.  ....++.++.++..+.  .+..+++|+|+.-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            79999999988887765322   37999999995 22333333221  1135799999998643  23357899999854

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=0.56  Score=42.96  Aligned_cols=48  Identities=8%  Similarity=0.054  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC----C----CCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSG----L----FSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~----~----~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      ..-.++|||.|+|.++..+.+..    |    ..++.-+|+|++..+.=+++++..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            35679999999999887776542    2    478999999999988888777654

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=92.09  E-value=0.089  Score=40.97  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=19.8

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      -||.|+.||...+           |.++|+.|++
T Consensus        30 hCp~Cg~PLF~Kd-----------G~v~CPvC~~   52 (131)
T COG1645          30 HCPKCGTPLFRKD-----------GEVFCPVCGY   52 (131)
T ss_pred             hCcccCCcceeeC-----------CeEECCCCCc
Confidence            4999999998743           7899999995

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=92.06  E-value=0.12  Score=31.18  Aligned_cols=34  Identities=24%  Similarity=0.713  Sum_probs=22.9

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ..||.|+..+...+..   . ......++|+.|++.+.
T Consensus         3 i~CP~C~~~f~v~~~~---l-~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK---L-PAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH---c-ccCCcEEECCCCCcEee
Confidence            5799999976554311   0 02456899999998763

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=91.96  E-value=0.11  Score=28.73  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=18.3

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      .||.|+.....             ..-.|+.||+.+.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            49999997654             3578999998663

Several members are annotated as putative helicases.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=91.92  E-value=0.16  Score=35.45  Aligned_cols=49  Identities=14%  Similarity=0.314  Sum_probs=33.8

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecC--CCCcccccCCCeeeeecc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAA  120 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~  120 (288)
                      ++.||.|+...........+.+ ....+..|.  .||+.|...+.+...+..
T Consensus         1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~   51 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVK   51 (72)
T ss_pred             CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence            4789999996533332222222 556788999  999999988777766654

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=91.56  E-value=0.1  Score=27.92  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=16.4

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      .||.|+.++..             +.-+|+.||+
T Consensus         1 ~Cp~CG~~~~~-------------~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIED-------------DAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCC-------------cCcchhhhCC
Confidence            39999998864             3567999985

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=91.40  E-value=0.2  Score=31.67  Aligned_cols=30  Identities=17%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      ..+.||.|+..+....         ....++|+.||...
T Consensus         2 ~~y~C~~CG~~~~~~~---------~~~~~~Cp~CG~~~   31 (46)
T PRK00398          2 AEYKCARCGREVELDE---------YGTGVRCPYCGYRI   31 (46)
T ss_pred             CEEECCCCCCEEEECC---------CCCceECCCCCCeE
Confidence            3578999999876643         12379999998644

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=91.36  E-value=2.1  Score=39.23  Aligned_cols=88  Identities=20%  Similarity=0.071  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCCC--EEEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG----------------LFSLVVALDYSENMLKQCYEFVQQES--NFPKEN--FLLV  235 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~----------------~~~~v~gvD~s~~~l~~A~~~~~~~~--g~~~~~--i~~~  235 (288)
                      ...-+|+|+||..|..+..+...-                +..+|+--|+-.+--...-+.+....  -....+  +..+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            345689999999999887665421                12477888875532221111111110  000122  2334


Q ss_pred             EecCCCCCCCCCccceEEeccccccCCC
Q 023019          236 RADISRLPFASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       236 ~~d~~~lp~~~~sfD~V~~~~vl~h~~d  263 (288)
                      -+.+..--|++++.|++++..+|||+..
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~  122 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLSQ  122 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred             CchhhhccCCCCceEEEEEechhhhccc
Confidence            4556655688999999999999999865

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=91.31  E-value=0.1  Score=30.83  Aligned_cols=31  Identities=26%  Similarity=0.438  Sum_probs=16.2

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      .||.|+.+|......     ......+.|++||..+
T Consensus         2 fC~~CG~~l~~~ip~-----gd~r~R~vC~~Cg~Ih   32 (34)
T PF14803_consen    2 FCPQCGGPLERRIPE-----GDDRERLVCPACGFIH   32 (34)
T ss_dssp             B-TTT--B-EEE--T-----T-SS-EEEETTTTEEE
T ss_pred             ccccccChhhhhcCC-----CCCccceECCCCCCEE
Confidence            499999988654211     1234688999998654

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=91.18  E-value=0.12  Score=30.00  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=16.0

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      .||.|+.+.....         .+....|+.|+..+
T Consensus         5 fC~~CG~~t~~~~---------~g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAP---------GGWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred             ccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence            5999999887654         34688999998754

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.10  E-value=0.75  Score=42.02  Aligned_cols=94  Identities=17%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec-CCCCCCCCCccc
Q 023019          173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID  250 (288)
Q Consensus       173 l~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d-~~~lp~~~~sfD  250 (288)
                      .+.++|.+|+=+|+| -|.++..+++... .+|+++|.+++-++.|++.-         .-.++... ....+--.+.||
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCc
Confidence            345679999999988 3456677777422 59999999999999998851         11223322 222211123499


Q ss_pred             eEEecccccc-CCCccccc---ceEEEEecC
Q 023019          251 AVHAGAAIHC-WSSPSTGV---GVFFQVTLI  277 (288)
Q Consensus       251 ~V~~~~vl~h-~~d~~~~l---G~lvi~t~~  277 (288)
                      +|+..-. .+ +..-.+.|   |++++....
T Consensus       232 ~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         232 AIIDTVG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            9998777 33 22222233   777776655

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=90.96  E-value=0.66  Score=43.19  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             CCeEEEEcCccchHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHHhcC-------C---CCCCCE
Q 023019          178 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQES-------N---FPKENF  232 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~l~~A~~~~~~~~-------g---~~~~~i  232 (288)
                      ..+|+|+|||+|.++..+..        +       .|..+|+.-|+-.+--...-+.+....       .   ....+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            56899999999977654422        1       123567777765433222222221100       0   000111


Q ss_pred             EEEE---ecCCCCCCCCCccceEEeccccccCCC
Q 023019          233 LLVR---ADISRLPFASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       233 ~~~~---~d~~~lp~~~~sfD~V~~~~vl~h~~d  263 (288)
                      -|+.   +.+-.--|+.++.+++++.+++||+..
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~  177 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ  177 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence            1222   333344478999999999999999865

>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases

Probab=90.85  E-value=0.075  Score=36.02  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=22.1

Q ss_pred             ccccccccCCCCCccccccccccCCceeCCCCCC-CCc
Q 023019           46 SSTAFVETKPSEPSFVENEASTSKNVLACPICYK-PLT   82 (288)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~CP~C~~-~l~   82 (288)
                      -.+|+++.+++. +..++|..++|++..|+.|+. +|.
T Consensus        16 G~~Pl~~~f~~~-~~~~~e~~~pL~l~~C~~CglvQl~   52 (62)
T PF08421_consen   16 GDQPLANSFLKP-ELDEPEPRYPLDLYVCEDCGLVQLE   52 (62)
T ss_dssp             EEEE-TT--B-T-TS-S---EEEEEEEEETTT--EEES
T ss_pred             CCCCccccccCh-hhCCCceEECCEEEECCCCCchhcC
Confidence            457899999998 888889999999999999998 443

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=90.74  E-value=0.18  Score=36.24  Aligned_cols=31  Identities=23%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ...||.|+.+-...         +..+.|.|..|+..+.-
T Consensus        35 ~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          35 KHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAG   65 (89)
T ss_pred             CCcCCCCCCcceee---------eccCeEEcCCCCCeecc
Confidence            35699999973332         46789999999987653

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=90.42  E-value=0.37  Score=40.83  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             CCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      +..|+|+|.-.|.-+..+++.    +..++|+|+|++........  .+.  .....++++++||..+.
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~--hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IES--HPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG------TTEEEEES-SSST
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhh--ccccCceEEEECCCCCH
Confidence            579999999999877766543    35679999999653322111  111  01137899999998754

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=90.33  E-value=0.15  Score=38.85  Aligned_cols=22  Identities=32%  Similarity=0.848  Sum_probs=18.8

Q ss_pred             CCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      ||+|+++|...             .+.|++|+...
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEE
Confidence            99999999874             59999998654

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=90.25  E-value=1.4  Score=34.92  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=39.4

Q ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEeccccccCCCccc
Q 023019          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPST  266 (288)
Q Consensus       203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~~vl~h~~d~~~  266 (288)
                      +|+|.|+-+.+++.+++++++.+  ...++.++..+=+++.  .+.+.+|+++.+..  ++|.-++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk   62 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDK   62 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-T
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCC
Confidence            58999999999999999999872  3357999987766554  23358999887754  4554433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.93  E-value=0.26  Score=29.47  Aligned_cols=33  Identities=21%  Similarity=0.691  Sum_probs=21.6

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      +.||.|+......+..   . ...+..++|+.|++.+
T Consensus         3 i~Cp~C~~~y~i~d~~---i-p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK---I-PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH---C-CCCCcEEECCCCCCEe
Confidence            5799999966543311   0 0234578999999865

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.88  E-value=0.17  Score=30.49  Aligned_cols=34  Identities=21%  Similarity=0.714  Sum_probs=21.2

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      +.||.|+.........   . ......++|++|+..+.
T Consensus         3 ~~CP~C~~~~~v~~~~---~-~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQ---L-GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHH---c-CCCCCEEECCCCCCEEE
Confidence            6799999965443211   0 01234689999997653

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR00595 priA primosomal protein N'

Probab=89.74  E-value=3.4  Score=40.04  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=21.9

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~  211 (288)
                      ..+--.|.|+=.....+.+.+++..|..+|-+.
T Consensus       262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~  294 (505)
T TIGR00595       262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT  294 (505)
T ss_pred             CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence            345566777777777777776666777776543

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=89.60  E-value=0.24  Score=32.37  Aligned_cols=27  Identities=26%  Similarity=0.619  Sum_probs=21.3

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      -.|+.|+.++...+           ..+.|+.|+.-|-
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyH   32 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYH   32 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCccc
Confidence            35999999987644           5899999987664

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.55  E-value=1.2  Score=41.19  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~  219 (288)
                      +-+.|+|+|.|.|.+++.+.-.. +..|.+||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            35689999999999999997653 3699999999877666654

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=89.36  E-value=0.61  Score=42.78  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEe
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHA  254 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~  254 (288)
                      ..+|||.=+|+|.=+..++...+...++.-|+|+..++.+++++..+.   ..+...+..|+..+-.. ...||+|=.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec
Confidence            678999999999988777777664589999999999999999988762   34455555776554322 356777744

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=89.22  E-value=0.68  Score=40.92  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCC-CCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~sfD~V~  253 (288)
                      ..|+.|+-+| -.-..+.+++-.+..-+|..+|+++..+..-.+.+++.+   ..++..+.-|+.+ +|- -...||+.+
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeee
Confidence            4578899999 555666676666666799999999999999988887772   5668888888874 331 126899887


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      .
T Consensus       227 T  227 (354)
T COG1568         227 T  227 (354)
T ss_pred             c
Confidence            6

>PHA00626 hypothetical protein

Probab=89.02  E-value=0.31  Score=31.85  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             eCCCCCCC-CcccCCCCCccccccCCceecCCCCccccc
Q 023019           73 ACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        73 ~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      .||.|++. +...+.-     .-..+.+.|+.|+..|..
T Consensus         2 ~CP~CGS~~Ivrcg~c-----r~~snrYkCkdCGY~ft~   35 (59)
T PHA00626          2 SCPKCGSGNIAKEKTM-----RGWSDDYVCCDCGYNDSK   35 (59)
T ss_pred             CCCCCCCceeeeecee-----cccCcceEcCCCCCeech
Confidence            59999994 4442210     012478999999987653

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=88.72  E-value=0.6  Score=30.00  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=23.5

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  113 (288)
                      .||.|+.-|......       ....+.|+.|+..+.+...
T Consensus         2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence            599999977554311       1237899999988776544

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.71  E-value=0.23  Score=27.36  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=16.6

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      ..||.|+..+..             +.-+|++||.
T Consensus         3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~   24 (26)
T PF13248_consen    3 MFCPNCGAEIDP-------------DAKFCPNCGA   24 (26)
T ss_pred             CCCcccCCcCCc-------------ccccChhhCC
Confidence            469999996543             4678999985

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=88.50  E-value=0.19  Score=40.71  Aligned_cols=39  Identities=23%  Similarity=0.467  Sum_probs=23.8

Q ss_pred             CceeCCCCCCCCcccCCCCCcccccc-------CCceecCCCCcccc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAA-------GSSLQCNTCKKTYS  109 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~-------~~~l~C~~C~~~~~  109 (288)
                      ..-+||.|+++|....... ..+.++       ...+.|++||+.|-
T Consensus        96 e~~RCp~CN~~L~~vs~ee-v~~~Vp~~~~~~~~~f~~C~~CgkiYW  141 (165)
T COG1656          96 EFSRCPECNGELEKVSREE-VKEKVPEKVYRNYEEFYRCPKCGKIYW  141 (165)
T ss_pred             ccccCcccCCEeccCcHHH-HhhccchhhhhcccceeECCCCccccc
Confidence            3567999999886653211 111122       23567999998663

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=88.49  E-value=0.26  Score=28.16  Aligned_cols=25  Identities=32%  Similarity=0.810  Sum_probs=14.0

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      .||.|++.....          +...+.|+.|++.
T Consensus         4 ~Cp~C~se~~y~----------D~~~~vCp~C~~e   28 (30)
T PF08274_consen    4 KCPLCGSEYTYE----------DGELLVCPECGHE   28 (30)
T ss_dssp             --TTT-----EE-----------SSSEEETTTTEE
T ss_pred             CCCCCCCcceec----------cCCEEeCCccccc
Confidence            499999977664          3578999999864

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=88.43  E-value=2  Score=37.90  Aligned_cols=65  Identities=23%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .+...++|+|||.|.++.++++..     ....++.||-...-.+ +..++....  ....+.-+..|+.++.
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~--~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDE--SEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccC--CCCceEEEEEEeeccc
Confidence            456789999999999999999876     4468999998664332 223333320  0135667777877764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=88.22  E-value=1.7  Score=37.68  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s  248 (288)
                      +..+++.+||=+|+++|.......+- ++..-|+++|.|+-.=+.....+++     -.|+.-+..|+....   ..-+-
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm  226 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM  226 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence            45567999999999999988888876 7778899999998443322222222     267777777876421   11235


Q ss_pred             cceEEe
Q 023019          249 IDAVHA  254 (288)
Q Consensus       249 fD~V~~  254 (288)
                      .|+|++
T Consensus       227 VDvIFa  232 (317)
T KOG1596|consen  227 VDVIFA  232 (317)
T ss_pred             EEEEec
Confidence            677766

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.20  E-value=1.8  Score=40.30  Aligned_cols=54  Identities=7%  Similarity=-0.071  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~  223 (288)
                      .-.+.|...++++||-|..|-...+.++. .+| .+|++||+|+.++...+-++..
T Consensus        26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~-~~P-~~I~aVDlNp~Q~aLleLKlAa   79 (380)
T PF11899_consen   26 VDMEALNIGPDDRVLTITSAGCNALDYLL-AGP-KRIHAVDLNPAQNALLELKLAA   79 (380)
T ss_pred             HHHHHhCCCCCCeEEEEccCCchHHHHHh-cCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence            34567778889999999766555555544 455 5999999999998888766554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=88.04  E-value=0.92  Score=42.25  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccceEEe
Q 023019          178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA  254 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~V~~  254 (288)
                      +.+|||.=+|+|.=+..++.. .....|+.-|+|+++++..+++++.+ +.....+.+...|+..+- .....||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCEEEe
Confidence            568999999999876666665 33358999999999999999999887 332236888888887543 24678999865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=87.75  E-value=0.53  Score=27.56  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      .-.|+.|++.+....         ..+.+.|..|+..++
T Consensus         3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP   32 (33)
T ss_pred             ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence            456999999876632         347899999998764

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=87.75  E-value=0.25  Score=34.15  Aligned_cols=28  Identities=36%  Similarity=1.018  Sum_probs=18.0

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      +.||.|+.+|.+.+           +.++|..|+..|..
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~   29 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK   29 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred             CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence            45999999998753           67899999876653

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.92  E-value=2.2  Score=38.69  Aligned_cols=48  Identities=27%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      -..+.|.+||-+|+|. |......++...-.+|+.+|+++.-++.|++.
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~  213 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF  213 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence            3456799999999996 87777777764447999999999999999983

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=86.60  E-value=0.42  Score=28.36  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  111 (288)
                      ..||.|+.-|....+.        .....|..|+..+++.
T Consensus         2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS   33 (35)
T ss_dssp             -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred             eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence            4699999977654321        2222899999877653

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PRK05580 primosome assembly protein PriA; Validated

Probab=86.17  E-value=7  Score=39.40  Aligned_cols=31  Identities=10%  Similarity=0.124  Sum_probs=18.7

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s  210 (288)
                      .+-..|-|+=.+...+.+.+++..|.-+|-+
T Consensus       431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d  461 (679)
T PRK05580        431 DLVPVGPGTERLEEELAELFPEARILRIDRD  461 (679)
T ss_pred             eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence            4555566666666666666555566666643

>PTZ00357 methyltransferase; Provisional

Probab=86.00  E-value=3.4  Score=41.22  Aligned_cols=74  Identities=12%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             eEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------CCCEEEEEecCCCCCCC---
Q 023019          180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFP-------KENFLLVRADISRLPFA---  245 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------~~~i~~~~~d~~~lp~~---  245 (288)
                      .|+-+|+|-|.+.....+.    +-..+|++||-++..+.....+.... ..+       ...++++..|...+..+   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~-eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND-PEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc-cccccccccCCCeEEEEeCccccccccccc
Confidence            5899999999987655443    44468999999966554444443221 011       23589999999887432   


Q ss_pred             --------CCccceEEe
Q 023019          246 --------SSSIDAVHA  254 (288)
Q Consensus       246 --------~~sfD~V~~  254 (288)
                              -+++|+|++
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                    137999987

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=85.89  E-value=0.58  Score=30.21  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      .||.|+..+...          ..+.+.|..||..+
T Consensus        22 fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~   47 (50)
T PRK00432         22 FCPRCGSGFMAE----------HLDRWHCGKCGYTE   47 (50)
T ss_pred             cCcCCCcchhec----------cCCcEECCCcCCEE
Confidence            699999852221          24789999998765

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=85.52  E-value=1.2  Score=39.91  Aligned_cols=66  Identities=20%  Similarity=0.332  Sum_probs=50.5

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccceEEecc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA  256 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD~V~~~~  256 (288)
                      +++|+-||-|.+..-+.+.|. ..+.++|+++...+.-+.+.        .  ....+|+..+.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence            689999999999999999985 47889999999888887763        2  67888988775   333 589988864


Q ss_pred             c
Q 023019          257 A  257 (288)
Q Consensus       257 v  257 (288)
                      -
T Consensus        70 P   70 (335)
T PF00145_consen   70 P   70 (335)
T ss_dssp             -
T ss_pred             C
Confidence            3

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=85.33  E-value=4  Score=36.18  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      ....+.++.. ...++..|||.=+|+|..+......+-  ..+|+|+++.-++.+.+++...
T Consensus       209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence            3334555554 456799999999999999999988876  9999999999999999998764

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=85.13  E-value=1.2  Score=39.82  Aligned_cols=78  Identities=12%  Similarity=0.167  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      ..++||-||-|.|.+.+...+.-.-.++.-+|++...++..++.+... .|...+++.+..||...+  ..+.++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            467899999999999998888743458999999999999999987653 234567899999987543  23478999998


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      .
T Consensus       201 ~  201 (337)
T KOG1562|consen  201 T  201 (337)
T ss_pred             E
Confidence            7

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.05  E-value=0.28  Score=29.89  Aligned_cols=36  Identities=17%  Similarity=0.388  Sum_probs=18.0

Q ss_pred             eCCCCCCCC-cccCCCCCccccccCCceecCCCCccc
Q 023019           73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        73 ~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      .||.|+..- .....+..+.++...-.+.|.+|++.+
T Consensus         2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            599999841 111112222333445577899998754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.00  E-value=0.36  Score=40.03  Aligned_cols=34  Identities=21%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             ccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        65 ~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      ....-..+.||.|+...+..+        +....+.|+.||.
T Consensus       111 ~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~  144 (178)
T PRK06266        111 EEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGE  144 (178)
T ss_pred             hccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCC
Confidence            334456789999999776654        4456899999985

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=85.00  E-value=0.51  Score=28.91  Aligned_cols=36  Identities=19%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             eCCCCCCCC-cccCCCCCccccccCCceecCCCCccc
Q 023019           73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        73 ~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      .||.|+..- .....+..+.++...-.+.|.+|++.+
T Consensus         2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w   38 (40)
T smart00440        2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW   38 (40)
T ss_pred             cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence            599999832 211112222233344577899998754

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PRK10458 DNA cytosine methylase; Provisional

Probab=84.97  E-value=6.3  Score=37.83  Aligned_cols=74  Identities=18%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             HHHHHHHhhcCCCC------CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023019          164 KEFELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (288)
Q Consensus       164 ~~~~~l~~~l~~~~------~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~  237 (288)
                      .+...+.+.+...+      .-+++|+-||.|.+..-+...|. -.|.++|+++.+.+.-+.+...     .+....+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~  141 (467)
T PRK10458         68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE  141 (467)
T ss_pred             HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence            34556666654322      45899999999999999988876 3678899999887776665321     122334456


Q ss_pred             cCCCCC
Q 023019          238 DISRLP  243 (288)
Q Consensus       238 d~~~lp  243 (288)
                      |+..+.
T Consensus       142 DI~~i~  147 (467)
T PRK10458        142 DIRDIT  147 (467)
T ss_pred             ChhhCc
Confidence            666553

>PRK10220 hypothetical protein; Provisional

Probab=84.95  E-value=0.8  Score=34.34  Aligned_cols=30  Identities=20%  Similarity=0.583  Sum_probs=24.0

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  111 (288)
                      -.||.|.+.....+          ...+.|+.|++.+...
T Consensus         4 P~CP~C~seytY~d----------~~~~vCpeC~hEW~~~   33 (111)
T PRK10220          4 PHCPKCNSEYTYED----------NGMYICPECAHEWNDA   33 (111)
T ss_pred             CcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence            45999999888754          5689999999877654

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=84.86  E-value=0.8  Score=40.55  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHH
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML  214 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l  214 (288)
                      .+++|||+|||.|.-...+...+. ..+...|++...+
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence            588999999999998888887774 4888888888776

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=84.78  E-value=3.1  Score=38.28  Aligned_cols=44  Identities=30%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       177 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ++.+|+-+|||. |.++..+++.....+|+.+|.++.-++.|++.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            455999999997 88888887775557999999999999999985

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=84.77  E-value=2.2  Score=33.93  Aligned_cols=38  Identities=18%  Similarity=0.126  Sum_probs=25.6

Q ss_pred             EEcCccc--hHHHHHH--HhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       183 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      |||++.|  .....+.  ..++..+|+++|+++...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555543  346667999999999999998888

; PDB: 2PY6_A.

>PF14353 CpXC: CpXC protein

Probab=84.66  E-value=0.52  Score=36.71  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             eeCCCCCCCCcccCCCCCcc-------cccc---CCceecCCCCcccccCCC
Q 023019           72 LACPICYKPLTWIGDSSLSI-------ESAA---GSSLQCNTCKKTYSGVGT  113 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~-------~~i~---~~~l~C~~C~~~~~~~~g  113 (288)
                      +.||.|+..........++.       ..+-   -..+.|++||+.+...-.
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p   53 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP   53 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence            46999998643322111211       1111   235689999988776433

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.23  E-value=3.4  Score=37.88  Aligned_cols=102  Identities=14%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC--CCCCC-CCcc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFA-SSSI  249 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~--~lp~~-~~sf  249 (288)
                      ......+|||+|.|.|.-+.++..-.|. -.++-++.|+..-+.........   ......+...|+.  .++++ ...|
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp~ad~y  186 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLPAADLY  186 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCCcccee
Confidence            3344667999999999888877776653 35677788886655554433322   1223333333433  23332 2456


Q ss_pred             ceEEeccccccCCCccccc-------------ceEEEEecCc
Q 023019          250 DAVHAGAAIHCWSSPSTGV-------------GVFFQVTLII  278 (288)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l-------------G~lvi~t~~~  278 (288)
                      ++|+..+-|-|...+....             |.|+|...+-
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            6666666555555444221             8888877654

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=84.23  E-value=0.74  Score=28.37  Aligned_cols=23  Identities=30%  Similarity=0.718  Sum_probs=17.7

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCC
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~  105 (288)
                      .||.|+.+|....          .+...|..|+
T Consensus        19 ~Cp~C~~PL~~~k----------~g~~~Cv~C~   41 (41)
T PF06677_consen   19 HCPDCGTPLMRDK----------DGKIYCVSCG   41 (41)
T ss_pred             ccCCCCCeeEEec----------CCCEECCCCC
Confidence            4999999998732          3578999885

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>PRK14873 primosome assembly protein PriA; Provisional

Probab=84.19  E-value=11  Score=37.81  Aligned_cols=75  Identities=12%  Similarity=-0.021  Sum_probs=45.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc-
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA-  256 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~-  256 (288)
                      +..+.-.|-|+-.....+.+.+|+..|.-+|-+. +++..           .....++.+.=...|.-.+.+.+|...+ 
T Consensus       430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~~-----------~~~~~IlVGTqgaepm~~g~~~lV~ilda  497 (665)
T PRK14873        430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDTV-----------DAGPALVVATPGAEPRVEGGYGAALLLDA  497 (665)
T ss_pred             CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHhh-----------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence            4457888999999999999998888888888542 22211           1245566665432333335566665433 


Q ss_pred             -ccccCCCc
Q 023019          257 -AIHCWSSP  264 (288)
Q Consensus       257 -vl~h~~d~  264 (288)
                       .+-+.+|.
T Consensus       498 D~~L~~pDf  506 (665)
T PRK14873        498 WALLGRQDL  506 (665)
T ss_pred             hhhhcCCCc
Confidence             34445553

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=84.17  E-value=2.5  Score=36.19  Aligned_cols=71  Identities=7%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      +.+....+.-...-|.+||.|.|...+.+.+.+. .+...+|.+...+.-.+-..+..    ..+..+..+|+...
T Consensus        40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence            4445554544567899999999999999998875 57888888887665554443332    45677777887643

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.17  E-value=0.48  Score=26.61  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=11.3

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCC
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT  103 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~  103 (288)
                      .||.|+++|....         .+-.++|.+
T Consensus         1 ~CP~C~s~l~~~~---------~ev~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREE---------GEVDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-C---------CTTCEEE--
T ss_pred             CcCCCCCEeEcCC---------CCEeEECCC
Confidence            4999999998654         234677864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.14  E-value=2.2  Score=38.64  Aligned_cols=66  Identities=21%  Similarity=0.230  Sum_probs=48.0

Q ss_pred             EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEecc
Q 023019          181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (288)
Q Consensus       181 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~  256 (288)
                      |+|+-||-|.+..-+.+.|. ..+.++|+++..++.-+.+.        .. .++.+|+.++... -..+|+++...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecC
Confidence            68999999999999998886 34668999999888877763        22 3456777766421 23578888754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.10  E-value=0.4  Score=38.93  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             ccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        65 ~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      ....-..+.||.|+...+..+        +....+.|+.||..
T Consensus       103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM  137 (158)
T ss_pred             hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence            344456788999998776654        44568999999853

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.09  E-value=0.57  Score=32.87  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=24.2

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  113 (288)
                      ++.||+|+-.|......+       -..=.|+.|+-+...+..
T Consensus         1 ~llCP~C~v~l~~~~rs~-------vEiD~CPrCrGVWLDrGE   36 (88)
T COG3809           1 MLLCPICGVELVMSVRSG-------VEIDYCPRCRGVWLDRGE   36 (88)
T ss_pred             CcccCcCCceeeeeeecC-------ceeeeCCccccEeecchh
Confidence            467999999886654221       123479999977776543

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=83.19  E-value=0.66  Score=27.73  Aligned_cols=26  Identities=19%  Similarity=0.627  Sum_probs=19.7

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      ..|+.|++.+..          ...+.+.|..||+.
T Consensus         9 ~~C~~C~~~~~~----------~~dG~~yC~~cG~~   34 (36)
T PF11781_consen    9 EPCPVCGSRWFY----------SDDGFYYCDRCGHQ   34 (36)
T ss_pred             CcCCCCCCeEeE----------ccCCEEEhhhCceE
Confidence            459999998433          24689999999874

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=83.16  E-value=0.94  Score=33.96  Aligned_cols=29  Identities=28%  Similarity=0.726  Sum_probs=23.5

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  111 (288)
                      .||.|++.....+          ...+.|+.|++.+...
T Consensus         4 ~CP~C~seytY~d----------g~~~iCpeC~~EW~~~   32 (109)
T TIGR00686         4 PCPKCNSEYTYHD----------GTQLICPSCLYEWNEN   32 (109)
T ss_pred             cCCcCCCcceEec----------CCeeECcccccccccc
Confidence            5999999888754          5689999999877654

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=83.08  E-value=6.3  Score=38.15  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CCCcHHHHHHHHhhcCCC--CCCeEEEEcCccchHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCE
Q 023019          159 FPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF  232 (288)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i  232 (288)
                      ++.|....+.+.+.+.+.  ++..|.|..||+|.++....+.   + ....++|-+....|...++.++... +......
T Consensus       197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~t~  275 (501)
T TIGR00497       197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYANF  275 (501)
T ss_pred             eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCcccc
Confidence            566666667666665543  4568999999999988765432   1 1146999999999999999886544 1111222


Q ss_pred             EEEEecCCCC-CC-CCCccceEEecc
Q 023019          233 LLVRADISRL-PF-ASSSIDAVHAGA  256 (288)
Q Consensus       233 ~~~~~d~~~l-p~-~~~sfD~V~~~~  256 (288)
                      ....+|...- .+ ....||.|+++-
T Consensus       276 ~~~~~dtl~~~d~~~~~~~D~v~~Np  301 (501)
T TIGR00497       276 NIINADTLTTKEWENENGFEVVVSNP  301 (501)
T ss_pred             CcccCCcCCCccccccccCCEEeecC
Confidence            2333443322 22 234688887654

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=82.84  E-value=0.75  Score=36.84  Aligned_cols=39  Identities=23%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             ceeCCCCCCCCcccCCCCCccccc-------cCCceecCCCCccccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESA-------AGSSLQCNTCKKTYSG  110 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i-------~~~~l~C~~C~~~~~~  110 (288)
                      .-+|+.|+++|.......+ .+.+       ....+.|+.||+.|-.
T Consensus        91 ~sRC~~CN~~L~~v~~~~v-~~~vp~~v~~~~~~f~~C~~C~kiyW~  136 (147)
T PF01927_consen   91 FSRCPKCNGPLRPVSKEEV-KDRVPPYVYETYDEFWRCPGCGKIYWE  136 (147)
T ss_pred             CCccCCCCcEeeechhhcc-ccccCccccccCCeEEECCCCCCEecc
Confidence            4579999998755432111 1111       2247789999988754

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=82.71  E-value=1.1  Score=28.07  Aligned_cols=27  Identities=15%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      .+.|..|+......          ..+.++|+.||+.
T Consensus         2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK----------SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC----------CCCceECCCCCce
Confidence            37899999976543          2467999999864

present in RNA polymerase I, II and III

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=82.54  E-value=1.3  Score=23.94  Aligned_cols=23  Identities=22%  Similarity=0.664  Sum_probs=13.5

Q ss_pred             CCCCCCCCcccCCCCCccccccCCceecCCCC
Q 023019           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (288)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~  105 (288)
                      |-.|+..|...+         ....+.|++||
T Consensus         1 C~sC~~~i~~r~---------~~v~f~CPnCG   23 (24)
T PF07754_consen    1 CTSCGRPIAPRE---------QAVPFPCPNCG   23 (24)
T ss_pred             CccCCCcccCcc---------cCceEeCCCCC
Confidence            556666665432         23467777776

It is likely to bind zinc via its four well-conserved cysteine residues.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=82.30  E-value=0.82  Score=27.71  Aligned_cols=31  Identities=13%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      -.+.||.|+..+......      .......|+.||.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~   34 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI------SDDPLATCPECGG   34 (41)
T ss_pred             EEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence            357899999965433210      1246788999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.96  E-value=0.92  Score=34.35  Aligned_cols=30  Identities=17%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  111 (288)
                      ..||.||..+---          ...-..|+.||..|...
T Consensus        10 R~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence            5699999975432          13568899999988765

The function of members of this family is unknown.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=81.88  E-value=3.9  Score=34.40  Aligned_cols=43  Identities=30%  Similarity=0.368  Sum_probs=35.3

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN  212 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~  212 (288)
                      +.+...+++.+|+|+=.|.|++++.++.. ++.+.|++.-+.+.
T Consensus        41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~   84 (238)
T COG4798          41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL   84 (238)
T ss_pred             eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence            44556778999999999999999999887 66678888776654

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=81.74  E-value=0.67  Score=34.02  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCe
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH  114 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~  114 (288)
                      ++.||.|+.-|......       .-..+.|..|...+++...+
T Consensus         1 m~FCP~Cgn~Live~g~-------~~~rf~C~tCpY~~~I~~ei   37 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESGE-------SCNRFSCRTCPYVFPISREI   37 (105)
T ss_pred             CcccCCCCCEEEEecCC-------eEeeEEcCCCCceeeEeeee
Confidence            46799999988765421       14678999999888876443

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.73  E-value=0.67  Score=37.14  Aligned_cols=37  Identities=16%  Similarity=0.542  Sum_probs=23.0

Q ss_pred             cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      .-..+.||.|+......+..  .... +.+.+.|+.||..
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~--~~~d-~~~~f~Cp~Cg~~  132 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEAN--QLLD-MDGTFTCPRCGEE  132 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHH--HhcC-CCCcEECCCCCCE
Confidence            34578899999866543211  1101 2455999999863

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=81.59  E-value=0.98  Score=36.50  Aligned_cols=40  Identities=20%  Similarity=0.503  Sum_probs=22.7

Q ss_pred             eeCCCCCCCCccc-CCCCCc-cccccCCceecCCCCcccccCC
Q 023019           72 LACPICYKPLTWI-GDSSLS-IESAAGSSLQCNTCKKTYSGVG  112 (288)
Q Consensus        72 l~CP~C~~~l~~~-~~~~~~-~~~i~~~~l~C~~C~~~~~~~~  112 (288)
                      +.||-|+.+-+.. +..... .+.+. ...+|++||..+..-+
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~-~~~~c~~c~~~f~~~e   42 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIR-RRRECLACGKRFTTFE   42 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCcee-eeeeccccCCcceEeE
Confidence            4699999865221 111111 11222 2378999999887543

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=81.21  E-value=4.2  Score=36.40  Aligned_cols=50  Identities=8%  Similarity=0.085  Sum_probs=39.2

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      +..+.+.+|+-||.|--..+.++.+.-  .+|..+|+++..+...+-++...
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~  108 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAF  108 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHH
Confidence            344568899999999766777777654  49999999999988888776554

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=81.12  E-value=1.1  Score=28.16  Aligned_cols=27  Identities=22%  Similarity=0.674  Sum_probs=18.0

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      ++||.|+..-.. ..       -....++|..|++
T Consensus        19 ~~CP~Cg~~~~~-~~-------~~~~~~~C~~C~~   45 (46)
T PF12760_consen   19 FVCPHCGSTKHY-RL-------KTRGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCeeeE-Ee-------CCCCeEECCCCCC
Confidence            679999985211 10       1147899999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=80.82  E-value=1.5  Score=39.23  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      +..|+|+=+|-|+|+. .+...+. ..|+++|.++..++..++.++.+  ....+...+.+|-.... ++...|-|....
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~~-~~~~AdrVnLGL  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNPK-PRLRADRVNLGL  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhc--chHHHHHhhhccccccC-ccccchheeecc
Confidence            6789999999999988 6666665 69999999999999999887765  12233344555544433 356677776543

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=80.75  E-value=1.8  Score=40.54  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      +.+....  .+|..|-|+-||-|.+...++..+-  +|++-|.++.++++.+.+++.. -+...++..+..|+.
T Consensus       241 erlsg~f--k~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lN-kv~~~~iei~Nmda~  309 (495)
T KOG2078|consen  241 ERLSGLF--KPGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLN-KVDPSAIEIFNMDAK  309 (495)
T ss_pred             HHHhhcc--CCcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccc-ccchhheeeecccHH
Confidence            4444433  3488999999999999999999884  9999999999999999988764 122234666666654

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=80.21  E-value=4.9  Score=33.76  Aligned_cols=69  Identities=14%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      .-...+.+-..+...|+|+|.-.|.-+.+++..    |...+|+++|++-..+.-+...        .+++.+++++..+
T Consensus        58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~d  129 (237)
T COG3510          58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTD  129 (237)
T ss_pred             HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCC
Confidence            333444444445678999999999876666553    5446999999998765444332        4788899988765


Q ss_pred             C
Q 023019          242 L  242 (288)
Q Consensus       242 l  242 (288)
                      .
T Consensus       130 p  130 (237)
T COG3510         130 P  130 (237)
T ss_pred             H
Confidence            4

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=80.14  E-value=0.88  Score=33.10  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=21.9

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ..+.||.|+..-...         ...+.|.|..|+..+.
T Consensus        34 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~~C~~~~A   64 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKR---------VATGIWKCKKCGKKFA   64 (90)
T ss_dssp             S-BEESSSSSSEEEE---------EETTEEEETTTTEEEE
T ss_pred             CCCcCCCCCCceeEE---------eeeEEeecCCCCCEEe
Confidence            346799999954332         3468999999987554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3bkw_A	243	Crystal Structure Of S-Adenosylmethionine Dependent		6e-04

>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE  L +        
Sbjct: 31  EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA------R 83
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
           +  P       RAD+ +L     S D  ++  A+H
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALH 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3ege_A	261	Putative methyltransferase from antibiotic biosyn	8e-15
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-14
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-14
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-13
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-13
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-12
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-12
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-12
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-12
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	3e-11
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	3e-11
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-11
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-10
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-10
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-10
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-10
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	4e-10
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-10
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	6e-10
1xxl_A	239	YCGJ protein; structural genomics, protein structu	1e-09
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-09
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	4e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	8e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-09
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	8e-09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-08
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-08
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-08
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	6e-08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	5e-07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-07
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	9e-07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-06
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	4e-06
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	6e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	8e-06
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-05
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	6e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 71.8 bits (176), Expect = 8e-15
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
                 +    +   L    G  I D   G+G +S   A  GLF  V A++ S  M +Q 
Sbjct: 15  TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 268
                                   L     S+D V +  AIH +S      
Sbjct: 73  ----VVHPQVE-----WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSF 114

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE ML +        
Sbjct: 31  EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA------R 83

Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
           +  P       RAD+ +L     S D  ++  A+H     +
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA 124

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 69.5 bits (170), Expect = 3e-14
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
            F +   +  W                   + Y+K      ++D  CG G  +   +++G
Sbjct: 25  EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                V +D SE M+++       +      +   ++ D+S LPF +   +A+ A  ++ 
Sbjct: 76  --YKAVGVDISEVMIQKG------KERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
             E+  +K  L       ++D  CG G      A+ G    V+ +D SE ML +      
Sbjct: 30  AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----- 83

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST 266
            +           +  I  +     + + V +  A+H  +S   
Sbjct: 84  -KRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDD 126

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 65.7 bits (160), Expect = 6e-13
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
            L+  Y+K    G ++D +CG G FS +    G    VV +D SE+M+++  E+ +    
Sbjct: 30  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRKAREYAKSR-- 83

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
             + N   +  D  +L F   + D V    +I  +   
Sbjct: 84  --ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL 119

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
            G     E    ++       + G I+D   G+G ++   A  G    +  L+ +  +++
Sbjct: 20  LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77

Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
              +        P   F      I+ L  +      + A  ++ 
Sbjct: 78  LARQ------THPSVTF--HHGTITDLSDSPKRWAGLLAWYSLI 113

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           +     G I+D  CG+G + +   +    + +  +D +   LK+            KE F
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEV-----------KEKF 59

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
             V           +S+D +    + H     
Sbjct: 60  DSVITLSDPKEIPDNSVDFILFANSFHDMDDK 91

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
             P  G  +++A CG G  + I AK+   + + ++D S   L++  E  ++      +N 
Sbjct: 35  YPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNV 89

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
             ++A+I  LPF  SS D +     +    SP
Sbjct: 90  KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSP 121

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 14/126 (11%)

Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
           Y + WR   +         E  L+        G  I+DA CG G      +K G    V+
Sbjct: 19  YAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQGRIGGYLSKQGHD--VL 72

Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
             D    ++         + +FP+  +  V  D+S    + +  D + +   +  + +  
Sbjct: 73  GTDLDPILIDYA------KQDFPEARW--VVGDLSVDQISETDFDLIVSAGNVMGFLAED 124

Query: 266 TGVGVF 271
                 
Sbjct: 125 GREPAL 130

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 21/125 (16%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
                +  +            G                    ++   G+G  +      G
Sbjct: 17  AHPPEVAGQIATAMASAVHPKGE---------------EPVFLELGVGTGRIALPLIARG 61

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                +ALD    ML+      +Q+         +V+AD   +P    S+  V      H
Sbjct: 62  YR--YIALDADAAMLEV----FRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115

Query: 260 CWSSP 264
                
Sbjct: 116 LVPDW 120

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 43/187 (22%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTC------KKTYSGVGTHFDMTAASGSKD 125
            +CP+C++PL+              +S  C         K+ Y     +        S+D
Sbjct: 3   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGY----VNLLPVQHKRSRD 47

Query: 126 YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
            G+  S      R  F+   + +  R   V             ++  L       ++D  
Sbjct: 48  PGD--SAEMMQARRAFLDAGHYQPLRDAIV-----------AQLRERL-DDKATAVLDIG 93

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245
           CG G ++  FA +        LD S+  +K           +P        A   RLPF+
Sbjct: 94  CGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYP--QVTFCVASSHRLPFS 145

Query: 246 SSSIDAV 252
            +S+DA+
Sbjct: 146 DTSMDAI 152

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G  ID   G G  S   AK   FS + ALD+S++M +   + +   +   +     V+ 
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQI--VQG 100

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSP 264
           D+  +P   +  D + +  ++  W   
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDV 127

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
                 P+     +K   +  L   ++D   G  L          +     ++ S+  LK
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
           +   F ++ +   K N    + DI +LPF   S+  V++   I      
Sbjct: 61  KAENFSRENN--FKLNI--SKGDIRKLPFKDESMSFVYSYGTIFHMRKN 105

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
            +   +           ++D + G G  +  FA       VVA D +E++LK    F++ 
Sbjct: 24  SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 81

Query: 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
                 +    V+ D  ++PF       V    A H + +P
Sbjct: 82  N---GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNP 119

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 206
                  + W G         L++  L+P     I+   CG+   S      G F  V +
Sbjct: 16  GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70

Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC 260
           +DYS  ++          ++ P+  +     D+ +L F S+S D V     +  
Sbjct: 71  VDYSSVVVAAMQA---CYAHVPQLRW--ETMDVRKLDFPSASFDVVLEKGTLDA 119

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 13/86 (15%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++ YLK      ++D   G+G +S    + G    VV +D S+ ML+   E       
Sbjct: 46  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVARE------- 94

Query: 227 FPKENFLLVRADISRLPFASSSIDAV 252
             K    +V A    LPF S + +AV
Sbjct: 95  --KGVKNVVEAKAEDLPFPSGAFEAV 118

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 154 FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           FV G     ++ F   +  L+ V+    GN+++   G+G  +     +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
             M          +   PK  F +   D        +SID + +  A H  +  
Sbjct: 77  REMRMIA------KEKLPK-EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDD 122

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
           F   F+   ++   RQ     G   PE  ++       L       I D  CG+G  +  
Sbjct: 11  FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63

Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254
            A       +  +D   + ++   E   + +   +     +   +  LPF +  +D + +
Sbjct: 64  LADYVKGQ-ITGIDLFPDFIEIFNENAVKANCADRVKG--ITGSMDNLPFQNEELDLIWS 120

Query: 255 GAAIHC 260
             AI+ 
Sbjct: 121 EGAIYN 126

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 145 IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           + E  W +  V G   P     + ++  YL+      I+D  CGSG  S   A  G    
Sbjct: 1   MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54

Query: 204 VVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRLPFASSSIDAV 252
           V  +D +   ++      +    +            + S L F  SS D  
Sbjct: 55  VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
            +E   +KG L P  G ++++   G+G + R           V ++ SE ML        
Sbjct: 24  AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRRRA- 76

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                       VRA    LPF   S D V     + 
Sbjct: 77  -------PEATWVRAWGEALPFPGESFDVVLLFTTLE 106

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE 219
            PEK  +     LK   G  ++D   G+G +    +K  G    V A+D  E M+   +E
Sbjct: 25  DPEKVLKEFG--LKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80

Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
            V +      +N  +++++ +++P   +++D +      H
Sbjct: 81  KVNKL---GLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D   G+G  +  F+        + +D ++ M++    F Q++     EN    + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQG 76

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSP 264
               LPF   S D +    A H +S  
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDV 103

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-- 70

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
               +   +  D + +       D     A + 
Sbjct: 71  --PYDSEFLEGDATEIELN-DKYDIAICHAFLL 100

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           +      N  D  CG G  + +       +++  +D  ++ML++           P  NF
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA------ADRLPNTNF 82

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCW 261
              +AD++    A    D ++A A    W
Sbjct: 83  --GKADLATWKPA-QKADLLYANAVFQ-W 107

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 160 PGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218
           PG  +       ++  +     I D  CG+G  + + A       V  LD+    +    
Sbjct: 28  PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFN 86

Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC 260
              +Q     +     +   +  LPF +  +D + +  AI+ 
Sbjct: 87  RNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN 126

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++      + G++++ + G+G ++R  +       V ALD S  M+ +          
Sbjct: 36  AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-----GRHG 88

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                F   + D+          DAV     + 
Sbjct: 89  LDNVEF--RQQDLFDWTP-DRQWDAVFFAHWLA 118

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 16/87 (18%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G  ++   G+G F+            + ++ SE M +             K    +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA----------RKRGVFVLKG 91

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSP 264
               LP    S D       I     P
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDP 118

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           G L    G  I++  CG+G  +     +G    V A D S  +  +    + +       
Sbjct: 39  GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEASRRLGRPV----- 89

Query: 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
                     +L     + DAV A A +      
Sbjct: 90  ----RTMLFHQLDAI-DAYDAVWAHACLLHVPRD 118

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           L P  G  I+D  CG+G  +   A+SG  + V+  D +  M+++         N+P  +F
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKA------RQNYPHLHF 104

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIH 259
            +  AD          +DAV + A +H
Sbjct: 105 DV--ADARNFRVD-KPLDAVFSNAMLH 128

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 8/111 (7%)

Query: 150 WRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 208
           W      G      +   + +   +       ++D  CG G   R  A  G     V +D
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVD 81

Query: 209 YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
               ++       +             +   +++P      D + A  A+ 
Sbjct: 82  GDRTLVDAA----RAAGAGEVHLASYAQLAEAKVPVG-KDYDLICANFALL 127

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 25/192 (13%), Positives = 55/192 (28%), Gaps = 30/192 (15%)

Query: 85  GDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSF 144
           G  S+  + A+  +L  +          +  +M  A  + D  +   P   +        
Sbjct: 1   GPGSMPSKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD---PEKGW-------- 49

Query: 145 IYERG---WRQ-----NFVWGGF---PGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFS 192
            Y +    WR      + V GG       + E        L        +D   G G  +
Sbjct: 50  -YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
           +       ++    L+  ++ML++    +          F  + A +       ++ D +
Sbjct: 109 KNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVG---KF--ILASMETATLPPNTYDLI 162

Query: 253 HAGAAIHCWSSP 264
                    +  
Sbjct: 163 VIQWTAIYLTDA 174

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 191
           ++ F    F S  Y    R        P  P   ++++  Y        ++D  CG G  
Sbjct: 1   SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50

Query: 192 SRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRAD----ISRLPFA 245
           +   A+    F  ++  D S  M+K      +   + +   +F +  +D    +      
Sbjct: 51  TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110

Query: 246 SSSIDAVHAGAAIH 259
              ID + A    H
Sbjct: 111 KQKIDMITAVECAH 124

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 14/110 (12%)

Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
           Y   W +     G          +   L P     +++A CG G  +  F          
Sbjct: 21  YRHPWARVLS--GPDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--WA 74

Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHA 254
           A D+S  +LK         +N P  +          LP    +    + +
Sbjct: 75  AYDFSPELLKLA------RANAPHADVYEWNGK-GELPAGLGAPFGLIVS 117

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 145 IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 192
            + R W +N  +G     G +   +          +    ++   G  ++D  CG G  +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
              A +     V  +  S   + Q            +  F    AD   LPF  +S DAV
Sbjct: 77  VRLATARDVR-VTGISISRPQVNQANARATAAGLANRVTF--SYADAMDLPFEDASFDAV 133

Query: 253 HA-GAAIH 259
            A  +  H
Sbjct: 134 WALESLHH 141

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G +++ + G G  +  F   G    V AL+ S ++L    + + +     ++   LV+ 
Sbjct: 83  SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 238 DISRLPFASSSIDAV 252
           D+S           V
Sbjct: 141 DMSAFAL-DKRFGTV 154

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
           +K  + +        ++  + +D +CG+G  +             A+D S+ ML +    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAENK 78

Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAV 252
            + +         L   DIS L   +   D +
Sbjct: 79  FRSQ----GLKPRLACQDISNLNI-NRKFDLI 105

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
               ++  +  +                          +I+D   G+GL S    +    
Sbjct: 24  FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68

Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
           +    +D SE ML+       +           + AD S+  F     D V +  +IH  
Sbjct: 69  ATFTLVDMSEKMLEIA-----KNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHL 122

Query: 262 SSP 264
              
Sbjct: 123 EDE 125

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           +  +V+G  P        +      +  G I+  + G G  +   A  G    V A+D S
Sbjct: 8   QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60

Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
              L +  +  Q++          V+++++     + + + +
Sbjct: 61  SVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGI 98

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M    E  +   +            E+++  +K V  G  +D  CG+G  S   A +G  
Sbjct: 3   MVIRDENYFTDKYELTRTHS-----EVLE-AVKVVKPGKTLDLGCGNGRNSLYLAANGYD 56

Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
             V A D +   +         E N    +      D++ L F     D + +   +   
Sbjct: 57  --VDAWDKNAMSIANVERIKSIE-NLDNLHT--RVVDLNNLTF-DRQYDFILSTVVLMFL 110

Query: 262 SSP 264
            + 
Sbjct: 111 EAK 113

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 163 EKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           + E + ++   K         ++D +CG+G+ +   A+ G    VV LD  E ML+    
Sbjct: 24  KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARR 81

Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
             ++           ++ D+  + F  +  DAV
Sbjct: 82  KAKER----NLKIEFLQGDVLEIAF-KNEFDAV 109

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 10/119 (8%)

Query: 130 MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
                 + R+  +S           ++   +            +    K +    ++D  
Sbjct: 69  FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244
           CG G  S   +  G    V + D++EN +    E  ++E      N      DI+    
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI 181

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 45/188 (23%)

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           +E++ G S    T K        ++D   +                         Y   W
Sbjct: 3   VENSNGQSQPAATSKTVKDNAEIYYDDDDSDR----------------------FYFHVW 40

Query: 151 -RQNFVWGGFPGPEKEFEL----------------MKGYLKPVLGGNIIDASCGSGLFSR 193
             ++   G +  P  + E+                M G L+       +D   G G  +R
Sbjct: 41  GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAAR 98

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253
              +    S +  L+ +    K+  E+  Q      +N  +       +P   +S D + 
Sbjct: 99  FLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNSYDFIW 155

Query: 254 A-GAAIHC 260
           +  A +H 
Sbjct: 156 SQDAFLHS 163

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
            +    +   ++P  G  I D  CG+G  + + A    +  V  +D SE ML+   E   
Sbjct: 21  PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC 260
           +       +      D+  L              +++ 
Sbjct: 76  ET----NRHVDFWVQDMRELELPEPVDAITILCDSLNY 109

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++           +D   G G  ++      LF  V  +D +E+ L Q   ++ +E  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLL-LPLFREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
                       +        S D +     I   +  
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQ 162

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 26/200 (13%)

Query: 90  SIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFR--MPFMSFIYE 147
           S  S    S    +       V  ++  T  S +         A          ++ I +
Sbjct: 4   SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63

Query: 148 RGWRQNFVWG-GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVV 205
                   +G G         L         G  ++D  CG+G    + +K  G    V+
Sbjct: 64  EVL--EKFYGCGST-------LPADGSLE--GATVLDLGCGTGRDVYLASKLVGEHGKVI 112

Query: 206 ALDYSENMLKQC-----YEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHA 254
            +D  +N L+       Y   +   +  + N   ++  I  L          SS+D V +
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

Query: 255 GAAIHCWSSPSTGVGVFFQV 274
               +  ++         +V
Sbjct: 173 NCVCNLSTNKLALFKEIHRV 192

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           +L++         +++D +CG+G     F K         L+ SE+ML    +       
Sbjct: 32  DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARK------R 81

Query: 227 FPKENFLLVRADISRLPFASSSIDAV 252
            P       + D+           AV
Sbjct: 82  LPDATL--HQGDMRDFRLG-RKFSAV 104

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196
           +     + +++      ++        +    + G L+      ++D +CG+G+ S +  
Sbjct: 22  YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76

Query: 197 KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250
           + G    V ++D S+ MLK       +E    ++     +  I    + +   D
Sbjct: 77  EEGFS--VTSVDASDKMLKYA----LKERWNRRKEPAFDKWVIEEANWLTLDKD 124

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225
           + +K ++K   G  ++DA+CG+G  +   A   G    V   D  +  +    + +   +
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 226 NFPKENFLLVRADI-SRLPFASSSIDAV 252
               +   L++    +   +    + AV
Sbjct: 72  L--IDRVTLIKDGHQNMDKYIDCPVKAV 97

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
            +E   +   ++       +++D +CG+G+  R  A S     V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARR- 90

Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAV 252
                  P         D+           AV
Sbjct: 91  -----RNPDAVL--HHGDMRDFSLG-RRFSAV 114

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 12/118 (10%)

Query: 145 IYERGWRQNFV-WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           +YE  + +N++  GG      +  L    L       ++D   G G       +      
Sbjct: 26  VYEFIFGENYISSGGLE--ATKKILSDIELNE--NSKVLDIGSGLGGGCMYINEKYGAH- 80

Query: 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GAAIHC 260
              +D   N++    E V       K  F     DI    F  ++ D +++  A +  
Sbjct: 81  THGIDICSNIVNMANERVSGN---NKIIF--EANDILTKEFPENNFDLIYSRDAILAL 133

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSEN------MLKQCYEFVQQES 225
           +KP  G  I++  CG G  S + A   G    V  +D +         L Q +  +    
Sbjct: 41  VKP--GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98

Query: 226 NFPKENFLLVRADISRL-PFASSSIDAVHAGAAIH 259
              +            L P A    D V    ++ 
Sbjct: 99  LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLW 133

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           + +   L       ++DA+ G+G  +   A  GL   V A D  E  L +  + +     
Sbjct: 14  DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDLG- 68

Query: 227 FPKENFLLVRADISRLP-FASSSIDAV 252
              EN  L+      L  +    I A 
Sbjct: 69  --IENTELILDGHENLDHYVREPIRAA 93

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 6/94 (6%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES 225
             ++ +L+P  G  +    CG          S    + +V +DY    L          +
Sbjct: 110 RALQRHLRP--GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167

Query: 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                   L R D  +L       D + +     
Sbjct: 168 --LAGQITLHRQDAWKLDTR-EGYDLLTSNGLNI 198

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPK 229
            LK V    +ID  CG G    +  K   F  +  +D S ++L++  + ++ +      +
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83

Query: 230 ENFLLVRADISRLPFASSSIDAVHAGAAIH 259
           +   L ++ +       S  DA      I 
Sbjct: 84  KRISLFQSSLVYRDKRFSGYDAATVIEVIE 113

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 57  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHC 260
            K  F   +    R        D + +  + H 
Sbjct: 114 FKVFF-RAQDSYGRHMDLGKEFDVISSQFSFHY 145

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 19/130 (14%)

Query: 146 YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 199
           +E+ W +  V           E+   +     + +      +ID +CG+G  ++  ++  
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA-----VHA 254
            F  V+ LD S++ L+               N      D      A+          ++ 
Sbjct: 77  FFPRVIGLDVSKSALEIA------AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 255 GAAIHCWSSP 264
               H     
Sbjct: 131 RTGFHHIPVE 140

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
            ++S    +  +       +  WR +         E+  +L++  L      N ++  C 
Sbjct: 6   TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           +G F+   A       +  +D     + +
Sbjct: 62  AGAFTEKLAPHC--KRLTVIDVMPRAIGR 88

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 12/98 (12%)

Query: 180 NIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233
            I+    G+G               G+      ++ S   + +  E V + SN     F 
Sbjct: 55  KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114

Query: 234 LVRADISRL------PFASSSIDAVHAGAAIHCWSSPS 265
             +   S               D +H    ++      
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.84
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.7
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.66
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.65
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.65
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.63
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.63
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.62
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.62
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.62
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.61
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.61
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.61
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.61
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.6
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.6
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.6
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.59
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.59
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.59
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.59
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.58
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.58
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.58
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.57
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.56
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.56
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.56
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.55
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.55
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.55
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.54
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.54
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.54
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.54
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.54
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.53
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.53
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.53
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.52
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.51
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.5
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.49
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.49
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.48
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.48
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.47
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.47
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.46
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.46
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.46
3ocj_A	305	Putative exported protein; structural genomics, PS	99.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.46
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.45
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.45
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.45
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.45
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.45
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.44
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.44
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.44
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.44
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.44
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.43
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.43
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.42
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.42
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.41
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.41
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.41
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.4
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.4
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.4
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.4
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.38
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.38
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.38
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.38
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.37
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.36
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.36
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.36
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.36
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.35
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.35
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.35
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.35
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.35
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.34
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.34
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.34
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.34
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.34
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.34
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.33
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.33
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.33
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.33
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.32
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.32
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.32
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.32
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.31
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.31
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.3
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.3
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.3
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.3
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.29
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.29
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.29
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.29
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.29
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.29
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.29
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.29
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.29
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.28
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.28
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.28
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.28
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.27
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.27
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.26
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.26
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.26
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.26
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.25
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.25
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.25
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.25
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.24
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.24
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.23
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.23
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.22
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.21
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.21
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.2
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.2
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.19
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.18
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.17
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.17
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.17
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.17
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.17
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.16
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.16
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.15
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.15
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.15
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.14
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.14
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.14
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.14
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.14
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.13
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.13
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.13
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.13
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.1
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.1
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.1
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.1
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.09
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.09
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.08
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.07
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.07
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.07
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.07
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.06
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.05
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.04
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.04
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.04
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.02
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.02
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.02
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.99
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.99
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.99
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.98
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.98
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.98
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.97
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.97
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.96
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.95
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.95
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.95
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.95
2o07_A	304	Spermidine synthase; structural genomics, structur	98.94
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.93
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.93
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.93
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.93
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.92
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.92
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.92
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.9
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.9
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.9
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.89
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.88
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.88
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.88
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.87
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.87
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.86
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.86
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.84
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.84
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.84
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.84
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.82
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.81
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.81
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.8
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.79
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.77
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.75
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.7
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.68
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.66
3lkd_A	542	Type I restriction-modification system methyltrans	98.55
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.51
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.5
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.46
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.4
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.4
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.38
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.36
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.35
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.35
3khk_A	544	Type I restriction-modification system methylation	98.34
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.34
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.33
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.33
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.25
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.15
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.13
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.12
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.07
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.06
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.0
2k5r_A	97	Uncharacterized protein XF2673; solution structure	97.99
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.99
3ufb_A	530	Type I restriction-modification system methyltran	97.91
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.87
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.86
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.77
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.71
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.7
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.59
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.48
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.46
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.43
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.34
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.31
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.25
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.2
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.02
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.71
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.58
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.31
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.85
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	95.81
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.8
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.72
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.58
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.54
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.37
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.39
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.38
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.96
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.96
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.64
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	93.45
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	93.27
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.16
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.98
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	92.97
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	91.43
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	91.43
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.42
2j6a_A	141	Protein TRM112; translation termination, methyltra	90.44
3me5_A	482	Cytosine-specific methyltransferase; structural ge	90.11
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	90.02
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.74
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	89.15
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.13
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	88.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	87.25
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	87.13
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	86.34
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	86.07
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	86.06
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	85.28
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	85.06
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	84.87
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	84.85
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	84.73
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	84.36
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	84.26
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	84.14
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	83.98
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	83.73
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	83.4
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	83.28
4eye_A	342	Probable oxidoreductase; structural genomics, niai	82.85
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	82.61
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	82.36
3c85_A	183	Putative glutathione-regulated potassium-efflux S	81.91
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	81.88
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	81.48
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	81.45
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	81.33
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.31
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	81.31
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	81.18
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	81.08
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	81.08
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	80.94
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	80.79
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	80.54
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	80.51
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.42
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	80.12

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.84  E-value=2.4e-20  Score=163.20  Aligned_cols=180  Identities=20%  Similarity=0.267  Sum_probs=131.6

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCCCCC--cCcCCchhhhhhcCcchhhhhHHH
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKD--YGELMSPATEFFRMPFMSFIYERG  149 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~s~~~~~~  149 (288)
                      +.||.|+..+...           .+.+.|.+|+.++..++||++++.......  .......    +.           
T Consensus         3 ~~Cp~C~~~~~~~-----------~~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~----~~-----------   56 (269)
T 1p91_A            3 FSCPLCHQPLSRE-----------KNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEM----MQ-----------   56 (269)
T ss_dssp             BBCTTTCCBCEEE-----------TTEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHH----HH-----------
T ss_pred             ccCCCCCccceeC-----------CCEEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHHH----HH-----------
Confidence            7899999987653           257999999999999999999876432211  1111000    00           


Q ss_pred             HhhhhhcCCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC
Q 023019          150 WRQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (288)
Q Consensus       150 wr~~~~~~g~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~  227 (288)
                      .+..+...+++.+...  .+.+...+. .++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++       
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-------  128 (269)
T 1p91_A           57 ARRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-------  128 (269)
T ss_dssp             HHHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-------
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-------
Confidence            1223333444433222  233333332 457899999999999999999985446999999999999999987       


Q ss_pred             CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---ceEEEEecCcccHHHHHh
Q 023019          228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       228 ~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~t~~~~~l~el~~  286 (288)
                       ..++.+..+|+..+++++++||+|++..+...+....+.|   |.+++.++..+.+.++.+
T Consensus       129 -~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  189 (269)
T 1p91_A          129 -YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKG  189 (269)
T ss_dssp             -CTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred             -CCCcEEEEcchhhCCCCCCceeEEEEeCChhhHHHHHHhcCCCcEEEEEEcCHHHHHHHHH
Confidence             3567899999999999899999999988866665555566   999999999988888764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.70  E-value=8.1e-17  Score=139.95  Aligned_cols=107  Identities=22%  Similarity=0.343  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+   ..++.++++|+..+|+++
T Consensus        27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCCC
Confidence            5566667767789999999999999999999886  99999999999999999987762   357999999999999999


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++|+..++          |.+++.++..
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            9999999999999999998877          8888876543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.70  E-value=4.7e-18  Score=157.95  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++     +.......+...++..+++++
T Consensus        97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~l~~~~  169 (416)
T 4e2x_A           97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK-----GIRVRTDFFEKATADDVRRTE  169 (416)
T ss_dssp             HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT-----TCCEECSCCSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc-----CCCcceeeechhhHhhcccCC
Confidence            5566667766788999999999999999999877  999999999999999875     111111123334555667778


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      ++||+|++.++++|++++..++          |.+++.++...
T Consensus       170 ~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  212 (416)
T 4e2x_A          170 GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG  212 (416)
T ss_dssp             CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            9999999999999999998888          89998876543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.66  E-value=6.8e-16  Score=132.67  Aligned_cols=107  Identities=22%  Similarity=0.311  Sum_probs=94.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++++...+   ..++.++++|++.+|+++
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCC
Confidence            3456667777899999999999999999999886  99999999999999999987762   357999999999999999


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++..++          |.+++.++..
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            9999999999999999988777          8888877654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.66  E-value=1.4e-15  Score=134.68  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             HHHHHhhc----CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          166 FELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       166 ~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      .+.+...+    ...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+  ...++.++++|+.
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  142 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTT
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcc
Confidence            45566666    6667899999999999999999987 44  99999999999999999987762  2357999999999


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++|+++++||+|++..+++|++++..++          |.+++.++..
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            9999999999999999999999987777          8999888653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.66  E-value=2.1e-16  Score=137.89  Aligned_cols=103  Identities=23%  Similarity=0.241  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ...++.|.++...  +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++         ..++.++++|++++
T Consensus        27 ~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~~   93 (257)
T 4hg2_A           27 RALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAEDT   93 (257)
T ss_dssp             HHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTCC
T ss_pred             HHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhhh
Confidence            3445566666543  67999999999999999999886  99999999999998864         36899999999999


Q ss_pred             CCCCCccceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      |+++++||+|++..++||+ ++.+++          |.|++.++...
T Consensus        94 ~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           94 GLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             cccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            9999999999999999877 466666          88988887643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=1.8e-15  Score=130.88  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ....+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++++..+  ...++.++++|+.++
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGY   98 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhC
Confidence            3445667777777788999999999999999999874 2499999999999999999987761  235799999999999


Q ss_pred             CCCCCccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      ++ +++||+|++..+++|++++..++          |.+++.++
T Consensus        99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            88 88999999999999999987777          88888764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.65  E-value=4e-16  Score=131.14  Aligned_cols=93  Identities=16%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----C----CCCCCEEEEEecCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----N----FPKENFLLVRADIS  240 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-----g----~~~~~i~~~~~d~~  240 (288)
                      ...+...++.+|||+|||+|..+..+++.+.  +|+|+|+|+.|++.|+++.....     +    ....++.++++|+.
T Consensus        15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            3444555688999999999999999999986  99999999999999998864310     0    00357999999999


Q ss_pred             CCCCCC-CccceEEeccccccCCCc
Q 023019          241 RLPFAS-SSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       241 ~lp~~~-~sfD~V~~~~vl~h~~d~  264 (288)
                      ++++.+ ++||+|++..+++|++..
T Consensus        93 ~l~~~~~~~fD~v~~~~~l~~l~~~  117 (203)
T 1pjz_A           93 ALTARDIGHCAAFYDRAAMIALPAD  117 (203)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHH
T ss_pred             cCCcccCCCEEEEEECcchhhCCHH
Confidence            999875 899999999999999754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.65  E-value=1.1e-15  Score=133.63  Aligned_cols=99  Identities=13%  Similarity=0.209  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      .++.+|||||||+|.++..+++..  ++.+|+|+|+|+.|++.|++++...+  ...++.++++|+.++|++  .||+|+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEeeccccccccc--ccccce
Confidence            458999999999999999999874  34699999999999999999988762  246899999999999874  599999


Q ss_pred             eccccccCCCccc--cc----------ceEEEEecCc
Q 023019          254 AGAAIHCWSSPST--GV----------GVFFQVTLII  278 (288)
Q Consensus       254 ~~~vl~h~~d~~~--~l----------G~lvi~t~~~  278 (288)
                      +..+++|++++++  ++          |.|+++....
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            9999999986643  33          8888887644

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.64  E-value=2.3e-15  Score=131.47  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=94.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+  ...++.++.+|+.++|+++
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCCCC
Confidence            556667777778999999999999999998874 3599999999999999999987751  2357999999999999999


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++..++          |.+++.++..
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            9999999999999999987777          8899888653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=1.2e-15  Score=128.82  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=94.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.+...+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.|++++...+   ..++.++.+|+..++++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC
Confidence            445566666778899999999999999999986 55699999999999999999988762   34799999999999999


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++..+++|++++..++          |.+++.++..
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            99999999999999999988777          8898887653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=3.5e-15  Score=130.12  Aligned_cols=112  Identities=16%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             cHHHHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          162 PEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       162 ~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      .......+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++++..+  ...++.++++|+.
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~  106 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMD  106 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTT
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChh
Confidence            3444555666665 567899999999999999999998 44699999999999999999988762  2356999999999


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++++++++||+|++..+++|+ ++..++          |.+++.++.
T Consensus       107 ~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          107 DLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             SCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             hCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999989999999999999999 776666          899888764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.63  E-value=1.1e-15  Score=132.60  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ....+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|++++...     .++.++++|+.++
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~  114 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTK  114 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccC
Confidence            3446777777777788999999999999999999973 249999999999999999874332     6899999999999


Q ss_pred             CCCCCccceEEeccccccC--CCccccc----------ceEEEEecCccc
Q 023019          243 PFASSSIDAVHAGAAIHCW--SSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~--~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      |+++++||+|++..+++|+  +++..++          |.+++.++....
T Consensus       115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999999999999999999  6777666          899998865443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.63  E-value=3.8e-15  Score=125.20  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++ +|||||||+|.++..+++. +..+++|+|+|+.+++.|++++...+  ...++.++++|+.+++++
T Consensus        33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCCCC
Confidence            4556666665555 9999999999999999998 44699999999999999999988762  235799999999999999


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +++||+|++..+++|++++..++          |.+++.+..
T Consensus       109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            99999999999999999988877          888887643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.62  E-value=3.6e-15  Score=127.26  Aligned_cols=110  Identities=20%  Similarity=0.274  Sum_probs=92.5

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      .+.+...+. ..++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|++++...     .++.++++|+.++++
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~  106 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDF  106 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCC
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhccCC
Confidence            345555554 45678999999999999999999976679999999999999999986654     389999999999988


Q ss_pred             CCCccceEEeccccccCCCccc--cc----------ceEEEEecCcccH
Q 023019          245 ASSSIDAVHAGAAIHCWSSPST--GV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~~~~~l  281 (288)
                      + ++||+|++..+++|++++..  ++          |.+++.++.....
T Consensus       107 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  154 (234)
T 3dtn_A          107 E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET  154 (234)
T ss_dssp             C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence            7 89999999999999987763  44          9999988765543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.62  E-value=5.3e-15  Score=127.91  Aligned_cols=112  Identities=15%  Similarity=0.236  Sum_probs=93.8

Q ss_pred             CcHHHHHHHHhhc-CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC
Q 023019          161 GPEKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (288)
Q Consensus       161 ~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~  239 (288)
                      ........+...+ ...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++...+  ...++.++++|+
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~  105 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSM  105 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCT
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECCh
Confidence            3344455566666 455688999999999999999999976 499999999999999999988762  234599999999


Q ss_pred             CCCCCCCCccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          240 SRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       240 ~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      ..+|+++++||+|++..+++|+ ++..++          |.+++.++
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999999999999999999999 676666          88988874

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.62  E-value=1.4e-15  Score=128.34  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=90.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...     .++.++++|+.+++ ++
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence            3444456666788999999999999999999875  9999999999999999987654     48999999999988 67


Q ss_pred             CccceEEeccccccCCCccc---cc----------ceEEEEecCcccH
Q 023019          247 SSIDAVHAGAAIHCWSSPST---GV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~---~l----------G~lvi~t~~~~~l  281 (288)
                      ++||+|++..+++|++++..   ++          |.++++++.....
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  160 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATC  160 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence            89999999999999998743   23          8999988765543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.62  E-value=2e-15  Score=130.53  Aligned_cols=105  Identities=20%  Similarity=0.233  Sum_probs=91.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|++++.      ..++.++++|+..+++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            4566777766789999999999999999999875 499999999999999998743      358999999999999989


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++..++          |.+++.++.+
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  148 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHP  148 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            9999999999999999988877          8888886554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.62  E-value=3.6e-15  Score=130.56  Aligned_cols=107  Identities=23%  Similarity=0.342  Sum_probs=93.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.......++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|++++...+   ..++.++.+|+..++++++
T Consensus        28 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~  104 (276)
T 3mgg_A           28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFEDS  104 (276)
T ss_dssp             HHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCTT
T ss_pred             HHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCCC
Confidence            3444444567899999999999999999999777799999999999999999988762   3579999999999999999


Q ss_pred             ccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +||+|++..+++|++++..++          |.+++.+..
T Consensus       105 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          105 SFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            999999999999999998777          888887643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.61  E-value=1.3e-15  Score=134.16  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=90.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS  246 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~  246 (288)
                      .+...+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+  ...++.++++|+.+++ +.+
T Consensus        60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCS
T ss_pred             HHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcC
Confidence            344444433 67999999999999999999865  99999999999999999987751  1267999999999987 778


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      ++||+|++..+++|++++..++          |.+++.++....
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            9999999999999999998877          899998876544

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.61  E-value=2.2e-15  Score=127.37  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=88.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC---CCCEEEEEecCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~---~~~i~~~~~d~~~lp  243 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|++++...+ ..   ..++.++++|+..++
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR-LPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG-SCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc-cccccCcceEEEeCcccccc
Confidence            44455554456789999999999999999998866799999999999999999976541 10   127999999998888


Q ss_pred             CCCCccceEEeccccccCCCc--cccc---------ceEEEEecCc
Q 023019          244 FASSSIDAVHAGAAIHCWSSP--STGV---------GVFFQVTLII  278 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~--~~~l---------G~lvi~t~~~  278 (288)
                      +.+++||+|++..+++|++++  ..++         |.+++.++..
T Consensus        98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A           98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            888999999999999999876  3444         5466665543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.61  E-value=3e-15  Score=126.48  Aligned_cols=101  Identities=20%  Similarity=0.236  Sum_probs=83.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC---CCCEEEEEecCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~---~~~i~~~~~d~~~lp  243 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|++++... +..   ..++.++++|+..++
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL-RLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC-CCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh-cCCcccCcceEEEeCCccccc
Confidence            4455555545678999999999999999999886679999999999999999998654 110   127999999998888


Q ss_pred             CCCCccceEEeccccccCCCc--cccc
Q 023019          244 FASSSIDAVHAGAAIHCWSSP--STGV  268 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~--~~~l  268 (288)
                      ..+++||+|++..+++|++++  ..++
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l  124 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFE  124 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHH
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHH
Confidence            878899999999999999876  4444

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.61  E-value=4.6e-15  Score=128.99  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=80.4

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh---------cCC-----CCCCCEEEEEecC
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESN-----FPKENFLLVRADI  239 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~---------~~g-----~~~~~i~~~~~d~  239 (288)
                      ...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.|++.|+++...         .++     ....++.++++|+
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            334578999999999999999999987  999999999999999887531         000     0135799999999


Q ss_pred             CCCCCCC-CccceEEeccccccCCCccc--cc----------ceEEEEec
Q 023019          240 SRLPFAS-SSIDAVHAGAAIHCWSSPST--GV----------GVFFQVTL  276 (288)
Q Consensus       240 ~~lp~~~-~sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~  276 (288)
                      .++++.+ ++||+|++..+++|++....  ++          |++++.++
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence            9998865 89999999999999976532  22          88766553

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=3.4e-15  Score=131.12  Aligned_cols=106  Identities=23%  Similarity=0.341  Sum_probs=90.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.++++        ..++.+.++|+..+++ ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQN--------YPHLHFDVADARNFRV-DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHH--------CTTSCEEECCTTTCCC-SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhh--------CCCCEEEECChhhCCc-CC
Confidence            34555666678899999999999999999854  4999999999999999987        3578899999999987 58


Q ss_pred             ccceEEeccccccCCCccccc----------ceEEEEecCcccHHHH
Q 023019          248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el  284 (288)
                      +||+|++..+++|++++..++          |.+++.++....+.++
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  163 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI  163 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHH
Confidence            999999999999999998877          8999988876654433

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.60  E-value=3.4e-15  Score=127.90  Aligned_cols=103  Identities=22%  Similarity=0.387  Sum_probs=89.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+..++.  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++.      ...++.++++|+.++++++
T Consensus        45 ~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~~~  114 (242)
T 3l8d_A           45 PFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             HHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCSSCT
T ss_pred             HHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCCCCC
Confidence            45555555  478999999999999999999876  9999999999999999863      1468999999999999989


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      ++||+|++..+++|++++..++          |.+++.++...
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            9999999999999999998777          89999886553

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.60  E-value=9.6e-15  Score=130.48  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=93.3

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       167 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      +.+.+.+. ..++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+  ...++.++.+|+.++|+
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCC
Confidence            45666776 667899999999999999999988 54  99999999999999999988762  23579999999999999


Q ss_pred             CCCccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      ++++||+|++..+++|+ ++..++          |.+++.++....
T Consensus       182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            99999999999999999 566666          999998865443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=5.9e-15  Score=127.65  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.++++        ..++.++.+|+.+++ ++
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~   93 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PA   93 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CS
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-cc
Confidence            345666666678899999999999999999985556999999999999999987        357899999999988 78


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++..++          |.+++.++..
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            8999999999999999987776          8999888643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.3e-14  Score=128.65  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ...++.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++++.. +....++.++++|+++
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSDD  100 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHHh
Confidence            334455655544 468899999999999999999764 5679999999999999999998764 1225789999999999


Q ss_pred             CCCCC------CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          242 LPFAS------SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       242 lp~~~------~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      +++.+      ++||+|++..+++|+ ++..++          |.+++.++.
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99887      899999999999999 888877          888885543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.59  E-value=3.9e-15  Score=125.75  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.|++.+++++.       .++.++.+|+.+++++ +
T Consensus        36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence            344444444688999999999999999999865  99999999999999998732       3788999999999987 9


Q ss_pred             ccceEEeccccccCCCccc--cc----------ceEEEEecCccc
Q 023019          248 SIDAVHAGAAIHCWSSPST--GV----------GVFFQVTLIIHV  280 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~~~~~  280 (288)
                      +||+|++..+++|++++..  ++          |.+++.++....
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  150 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD  150 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSS
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccC
Confidence            9999999999999999876  55          999998765444

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.59  E-value=8.8e-15  Score=126.73  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++.+|+.++++++++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAGV----DRKVQVVQADARAIPLPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTTS----CTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc----CCceEEEEcccccCCCCCCCeeEEE
Confidence            345688999999999999999998865  9999999999999999987222    4689999999999999899999999


Q ss_pred             eccccccCCCccccc----------ceEEEE
Q 023019          254 AGAAIHCWSSPSTGV----------GVFFQV  274 (288)
Q Consensus       254 ~~~vl~h~~d~~~~l----------G~lvi~  274 (288)
                      +..+++|++++..++          |.+++.
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999999999988777          777776

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=3.9e-15  Score=129.67  Aligned_cols=103  Identities=25%  Similarity=0.289  Sum_probs=89.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++         .++.++++|++++|++
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~~~   91 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL--FVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLALP   91 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC--EEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC--EEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCCCC
Confidence            35566677666789999999999999999998654  999999999999988763         3899999999999999


Q ss_pred             CCccceEEeccccccCCCccccc---------ceEEEEecCcc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV---------GVFFQVTLIIH  279 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l---------G~lvi~t~~~~  279 (288)
                      +++||+|++..+++|++++..++         |.+++.++...
T Consensus        92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkgG~~~~~~~~~~  134 (261)
T 3ege_A           92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR  134 (261)
T ss_dssp             TTCBSEEEEESCGGGCSSHHHHHHHHHHHBCSSCEEEEEECGG
T ss_pred             CCCEeEEEEcchHhhccCHHHHHHHHHHHhCCcEEEEEEcCCc
Confidence            99999999999999999988877         77888887654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.59  E-value=1.3e-14  Score=121.87  Aligned_cols=101  Identities=23%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+...+.  ++.+|||||||+|.++..+   +. .+++|+|+|+.|++.++++.        .++.++++|+.++|++++
T Consensus        29 ~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~-~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~   94 (211)
T 2gs9_A           29 ALKGLLP--PGESLLEVGAGTGYWLRRL---PY-PQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGE   94 (211)
T ss_dssp             HHHTTCC--CCSEEEEETCTTCHHHHHC---CC-SEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSS
T ss_pred             HHHHhcC--CCCeEEEECCCCCHhHHhC---CC-CeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCC
Confidence            3444443  6889999999999999888   21 28999999999999999872        578899999999999899


Q ss_pred             ccceEEeccccccCCCccccc----------ceEEEEecCcccHH
Q 023019          248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~  282 (288)
                      +||+|++..+++|++++..++          |.+++.++...+..
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~  139 (211)
T 2gs9_A           95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPW  139 (211)
T ss_dssp             CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHH
T ss_pred             cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcH
Confidence            999999999999999988777          99999998876653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.58  E-value=2.6e-15  Score=125.42  Aligned_cols=92  Identities=13%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++        ..++.++++|+.++++++++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            77999999999999999999876  999999999999999987        45789999999999998999999999999


Q ss_pred             cccCC--Cccccc----------ceEEEEecCcc
Q 023019          258 IHCWS--SPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       258 l~h~~--d~~~~l----------G~lvi~t~~~~  279 (288)
                      ++|++  ++..++          |.+++.++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            99997  666666          89998886654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.58  E-value=2e-14  Score=127.67  Aligned_cols=110  Identities=17%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++...+  ...++.++.+|+.++   
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc---
Confidence            34566777777889999999999999999999832 499999999999999999988762  234799999999876   


Q ss_pred             CCccceEEeccccccCCCcc---------ccc----------ceEEEEecCcccH
Q 023019          246 SSSIDAVHAGAAIHCWSSPS---------TGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~---------~~l----------G~lvi~t~~~~~l  281 (288)
                      +++||+|++..+++|+++|+         .++          |.+++.++.....
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  189 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  189 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence            68999999999999998872         333          9999998865443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.58  E-value=1.6e-14  Score=119.77  Aligned_cols=103  Identities=20%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...+   ..++.++.+|+..+++ ++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CC
Confidence            344555555678999999999999999999865  99999999999999999987762   3479999999999888 88


Q ss_pred             ccceEEeccccccCC--Cccccc----------ceEEEEec
Q 023019          248 SIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTL  276 (288)
Q Consensus       248 sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~  276 (288)
                      +||+|++..+++|++  ++..++          |.+++.++
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            999999999999998  555555          88777653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.58  E-value=6.4e-15  Score=126.18  Aligned_cols=97  Identities=12%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|++++.       .++.++++|+.++ +++++||+|++.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~~  111 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLTH  111 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEhh
Confidence            467899999999999999999887  89999999999999998731       1799999999887 4678999999999


Q ss_pred             ccccCCCcc--------ccc---ceEEEEecCcccHHH
Q 023019          257 AIHCWSSPS--------TGV---GVFFQVTLIIHVVED  283 (288)
Q Consensus       257 vl~h~~d~~--------~~l---G~lvi~t~~~~~l~e  283 (288)
                      +++|++++.        +.|   |.+++.++....+..
T Consensus       112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~  149 (250)
T 2p7i_A          112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSR  149 (250)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHH
Confidence            999999985        444   999999987765543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.58  E-value=3.4e-14  Score=118.92  Aligned_cols=119  Identities=14%  Similarity=0.000  Sum_probs=95.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      +......+...+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.|++++... +  ..++.++.+|+.+
T Consensus        25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~  101 (204)
T 3e05_A           25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-V--ARNVTLVEAFAPE  101 (204)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH-T--CTTEEEEECCTTT
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEeCChhh
Confidence            333345667777777899999999999999999999987779999999999999999998876 2  3689999999976


Q ss_pred             CCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      .....++||+|++..+++   ++..++          |.+++.+....+..++.+
T Consensus       102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  153 (204)
T 3e05_A          102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVE  153 (204)
T ss_dssp             TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHH
T ss_pred             hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHH
Confidence            544457899999998876   344333          999998888777666654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=1.6e-14  Score=127.31  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=87.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.|++.|++++...    ..++.++++|+.++++ +++||+|
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~v   93 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL-NDKYDIA   93 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC-SSCEEEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCc-CCCeeEE
Confidence            455688999999999999999999865 369999999999999999998776    3489999999999988 4699999


Q ss_pred             EeccccccCCCccccc----------ceEEEEecC
Q 023019          253 HAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       253 ~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++..+++|++++..++          |.+++..+.
T Consensus        94 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           94 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9999999999998777          888888776

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.57  E-value=9.8e-15  Score=124.95  Aligned_cols=105  Identities=29%  Similarity=0.362  Sum_probs=89.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|+++...      .++.++++|+..+++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence            4456666666788999999999999999998854 4899999999999999986422      37899999999998888


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++..++          |.+++.++.+
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  147 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP  147 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence            9999999999999999988777          8888887543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.56  E-value=2.1e-14  Score=122.04  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=88.9

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC---CCCEEEEEecCCCCCCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLPFA  245 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~---~~~i~~~~~d~~~lp~~  245 (288)
                      +...+.  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++... +..   ..++.++.+|+..++++
T Consensus        24 ~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~   98 (235)
T 3sm3_A           24 IHNYLQ--EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSP-GLNQKTGGKAEFKVENASSLSFH   98 (235)
T ss_dssp             HHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCC-SCCSSSSCEEEEEECCTTSCCSC
T ss_pred             HHHhCC--CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc-CCccccCcceEEEEecccccCCC
Confidence            344444  478999999999999999999865  9999999999999999987665 111   13689999999999998


Q ss_pred             CCccceEEeccccccCCCcc---ccc----------ceEEEEecCcc
Q 023019          246 SSSIDAVHAGAAIHCWSSPS---TGV----------GVFFQVTLIIH  279 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~---~~l----------G~lvi~t~~~~  279 (288)
                      +++||+|++..+++|++++.   .++          |.+++.++...
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN  145 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            99999999999999999987   555          99999887543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.56  E-value=1.3e-14  Score=126.86  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=91.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH------HHHHHHHHHHhcCCCCCCCEEEEEec-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQESNFPKENFLLVRAD-  238 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~------~l~~A~~~~~~~~g~~~~~i~~~~~d-  238 (288)
                      ..+.+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+.      |++.|++++...+  ...++.++.+| 
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECCh
Confidence            45566666777899999999999999999988 45569999999998      9999999987651  12579999998 


Q ss_pred             --CCCCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          239 --ISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       239 --~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                        ...+|+++++||+|++..+++|++++..++          |.+++.++..
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence              556778889999999999999999987754          8899887653

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.56  E-value=3.8e-14  Score=118.79  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=88.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+..++  .++.+|||||||+|.++..+++.++. +++|+|+|+.+++.|++++..     ..++.++++|+..++++
T Consensus        33 ~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~  104 (215)
T 2pxx_A           33 RALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDFP  104 (215)
T ss_dssp             HHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSC
T ss_pred             HHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCCC
Confidence            34444554  34789999999999999999998753 899999999999999998653     25789999999999988


Q ss_pred             CCccceEEeccccccCC---------------Cccccc----------ceEEEEecCcccH
Q 023019          246 SSSIDAVHAGAAIHCWS---------------SPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~---------------d~~~~l----------G~lvi~t~~~~~l  281 (288)
                      +++||+|++..+++|+.               ++..++          |.+++.++....+
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  165 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF  165 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH
Confidence            89999999999998775               333444          9999999877543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.55  E-value=5.1e-15  Score=120.16  Aligned_cols=97  Identities=14%  Similarity=0.205  Sum_probs=83.9

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sf  249 (288)
                      .+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.+..+|   +++++++|
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~   76 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSV   76 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCE
T ss_pred             HHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCce
Confidence            3344455688999999999999999999885  999999999999999987        3578899998   77788999


Q ss_pred             ceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          250 DAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      |+|++..+++|++++..++          |.+++.++...
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            9999999999999988777          99999877543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.55  E-value=2e-14  Score=122.89  Aligned_cols=107  Identities=19%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +..+...+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+  ...++.++++|+.+++ +
T Consensus        56 l~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~  129 (235)
T 3lcc_A           56 IVHLVDTSSLP-LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWR-P  129 (235)
T ss_dssp             HHHHHHTTCSC-CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCC-C
T ss_pred             HHHHHHhcCCC-CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCC-C
Confidence            33344433333 45999999999999999987665  99999999999999999976531  1357999999999987 4


Q ss_pred             CCccceEEeccccccCC--Cccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++..+++|++  ++..++          |.+++..+..
T Consensus       130 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          130 TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            56999999999999998  555555          8888877643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.55  E-value=2.8e-14  Score=116.27  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~  244 (288)
                      ...+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+  ...++ ++.+|+.+ ++.
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGGGGG
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhhhhc
Confidence            345566667777889999999999999999998666799999999999999999988762  12378 88888854 343


Q ss_pred             CCCccceEEeccccccC---CCccccc---ceEEEEecCcccHHHHHh
Q 023019          245 ASSSIDAVHAGAAIHCW---SSPSTGV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~---~d~~~~l---G~lvi~t~~~~~l~el~~  286 (288)
                      .+++||+|++..+++|.   ....+.|   |.+++.++......++.+
T Consensus        91 ~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  138 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWA  138 (178)
T ss_dssp             CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHH
T ss_pred             cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHH
Confidence            33899999999999881   1111222   999999988777766654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.54  E-value=3e-14  Score=119.83  Aligned_cols=101  Identities=19%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             HHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+...+. ..++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++.     +  ..++.++++|+.++ +++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-----~--~~~~~~~~~d~~~~-~~~  105 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRH-----G--LDNVEFRQQDLFDW-TPD  105 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGG-----C--CTTEEEEECCTTSC-CCS
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhc-----C--CCCeEEEecccccC-CCC
Confidence            3444443 45578999999999999999999965  999999999999999882     1  36899999999988 778


Q ss_pred             CccceEEeccccccCCCc--cccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++..+++|++++  ..++          |.+++.++..
T Consensus       106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            999999999999999986  4444          8998887754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.54  E-value=1.2e-14  Score=124.78  Aligned_cols=98  Identities=17%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++           +.++.+|+.+.  ++++++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEEE
Confidence            4578999999999999999999876  899999999999999862           67888888775  78889999999


Q ss_pred             eccccccCCCc--cccc----------ceEEEEecCcccHHHHHh
Q 023019          254 AGAAIHCWSSP--STGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       254 ~~~vl~h~~d~--~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +..+++|++++  ..++          |.+++.++....+.++.+
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  151 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLIN  151 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHH
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHH
Confidence            99999999966  5555          999999998888776654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.54  E-value=9.6e-15  Score=128.88  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCCCCEEEEEecCCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRLP-  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-~~~~~i~~~~~d~~~lp-  243 (288)
                      .+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+. ....++.+..+|+..++ 
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            34555555555688999999999999999999977  999999999999999988643210 01246788999998888 


Q ss_pred             --CCCCccceEEec-cccccCCC-------ccccc----------ceEEEEecCcccHHH
Q 023019          244 --FASSSIDAVHAG-AAIHCWSS-------PSTGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       244 --~~~~sfD~V~~~-~vl~h~~d-------~~~~l----------G~lvi~t~~~~~l~e  283 (288)
                        +++++||+|++. .+++|+++       +..++          |.+++.++..+.+.+
T Consensus       124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence              788999999998 89999999       66666          899998887665554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.54  E-value=2.4e-14  Score=119.85  Aligned_cols=97  Identities=22%  Similarity=0.341  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCccchH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~-~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      .++.+|||+|||+|.+ ...+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+.++++++++||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEEE
Confidence            3478999999999997 555555554  9999999999999999998776    35788999999999998899999999


Q ss_pred             ccccccC--CCccccc----------ceEEEEecCc
Q 023019          255 GAAIHCW--SSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       255 ~~vl~h~--~d~~~~l----------G~lvi~t~~~  278 (288)
                      ..+++|+  .++..++          |.+++.++..
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            9999999  4555555          8898888754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.54  E-value=1.8e-14  Score=127.58  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCccchHHH----HHHHhCCCCEE--EEEeCCHHHHHHHHHHHHhcCCCCCCCE--EEEEecCCCCC----
Q 023019          176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLV--VALDYSENMLKQCYEFVQQESNFPKENF--LLVRADISRLP----  243 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~----~l~~~~~~~~v--~gvD~s~~~l~~A~~~~~~~~g~~~~~i--~~~~~d~~~lp----  243 (288)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|++|++.|++++....+  ..++  .+..+++++++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence            457799999999997554    44444555544  9999999999999999865311  2344  44555555443    


Q ss_pred             --CCCCccceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          244 --FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       244 --~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                        +++++||+|++.+++||++|+..++          |.+++.....+
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  176 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  176 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence              5688999999999999999999888          88888876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.54  E-value=7.1e-14  Score=123.02  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=89.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++... .+|+|+|+|+.+++.|++++...+  ...++.++.+|+.++|   
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---  127 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD---  127 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC---
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC---
Confidence            4556667777789999999999999999985432 399999999999999999987651  2358999999998776   


Q ss_pred             CccceEEeccccccC--CCccccc----------ceEEEEecCccc
Q 023019          247 SSIDAVHAGAAIHCW--SSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~--~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      ++||+|++..+++|+  +++..++          |.+++.++....
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH  173 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence            789999999999999  5566665          999998876544

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.53  E-value=2e-14  Score=123.99  Aligned_cols=104  Identities=11%  Similarity=0.027  Sum_probs=87.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...     .++.++++|+..+++++
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhc-CEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCC
Confidence            3445555656788999999999999999988863 58999999999999999986442     57999999999999888


Q ss_pred             CccceEEeccccccCCC--ccccc----------ceEEEEec
Q 023019          247 SSIDAVHAGAAIHCWSS--PSTGV----------GVFFQVTL  276 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d--~~~~l----------G~lvi~t~  276 (288)
                      ++||+|++..+++|+++  +..++          |.+++.+.
T Consensus       157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999999999999964  55555          88888875

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.53  E-value=3.3e-14  Score=139.37  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=94.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCCCEEEEEecCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVRADISR  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g---~~~~~i~~~~~d~~~  241 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.|++.|++++....+   ....++.++++|+.+
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            4555666655568899999999999999999987 445999999999999999997764311   013579999999999


Q ss_pred             CCCCCCccceEEeccccccCCCccc--cc---------ceEEEEecCccc
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPST--GV---------GVFFQVTLIIHV  280 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~--~l---------G~lvi~t~~~~~  280 (288)
                      +++.+++||+|++..+++|++++..  ++         |.++++++....
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~ey  839 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEF  839 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGG
T ss_pred             CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchh
Confidence            9999999999999999999998663  22         988888876644

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=5e-14  Score=119.26  Aligned_cols=103  Identities=25%  Similarity=0.395  Sum_probs=86.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+..  +.+|||+|||+|.++..+++.++  +++|+|+|+.+++.|++++...    ..++.++++|+.++++++
T Consensus        30 ~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~  101 (227)
T 1ve3_A           30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFED  101 (227)
T ss_dssp             HHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCT
T ss_pred             HHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCC
Confidence            444555543  78999999999999999999987  9999999999999999998776    368999999999998888


Q ss_pred             CccceEEeccc--cccCCCccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAA--IHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~v--l~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++||+|++..+  ++|.+++..++          |.+++.++.
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            99999999999  55555665555          888888765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=1.5e-14  Score=123.72  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.|++.|++++...    ..++.++++|+..++++ ++||+|++..
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~fD~v~~~~  109 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNIN-RKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCCS-CCEEEEEECT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccCCcc-CCceEEEEcC
Confidence            578999999999999999999876  9999999999999999998776    23789999999998876 8999999998


Q ss_pred             -ccccCC---Cccccc----------ceEEEEecCcccHH
Q 023019          257 -AIHCWS---SPSTGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       257 -vl~h~~---d~~~~l----------G~lvi~t~~~~~l~  282 (288)
                       +++|++   ++..++          |.+++.++.+..+.
T Consensus       110 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  149 (246)
T 1y8c_A          110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLS  149 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHH
Confidence             999994   444444          88888877665443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.53  E-value=3.5e-14  Score=121.89  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|++++...+   ..++.++.+|+..+++++++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            57899999999999999998876 3599999999999999999876641   3468999999999988888999999999


Q ss_pred             ccccCCCcc--ccc----------ceEEEEecC
Q 023019          257 AIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       257 vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      +++|++++.  .++          |.+++.++.
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            999999865  444          888887754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.53  E-value=1.5e-13  Score=115.42  Aligned_cols=115  Identities=14%  Similarity=0.073  Sum_probs=91.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .....+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.|+++++..+  ...++.++.+|+.+..
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGG
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhc
Confidence            334556677777788999999999999999999984  499999999999999999988762  1237999999998843


Q ss_pred             CCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~  287 (288)
                      .....||+|++..++    ++. ++          |.+++.+...+++.++.+.
T Consensus       118 ~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  166 (204)
T 3njr_A          118 ADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQL  166 (204)
T ss_dssp             TTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHH
T ss_pred             ccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHH
Confidence            334679999988755    233 33          9999999988888777653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.52  E-value=1.1e-13  Score=116.07  Aligned_cols=107  Identities=16%  Similarity=0.071  Sum_probs=90.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|++++...+   ..++.++.+|+.+.+..
T Consensus        66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  140 (210)
T 3lbf_A           66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQA  140 (210)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCcc
Confidence            45666777777899999999999999999999865  99999999999999999988762   35799999999887767


Q ss_pred             CCccceEEeccccccCCCccc-cc---ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPST-GV---GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~t~~  277 (288)
                      +++||+|++..+++|+++... .|   |.+++....
T Consensus       141 ~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEECS
T ss_pred             CCCccEEEEccchhhhhHHHHHhcccCcEEEEEEcC
Confidence            789999999999999987433 33   888877654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=7.9e-14  Score=114.71  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=92.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCC--EEEEEecCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISRL  242 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~--i~~~~~d~~~l  242 (288)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|++++... +  ..+  +.++.+|+.+ 
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~-~--~~~~~~~~~~~d~~~-  113 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLN-N--LDNYDIRVVHSDLYE-  113 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT-T--CTTSCEEEEECSTTT-
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHc-C--CCccceEEEECchhc-
Confidence            34667777776678899999999999999999884  49999999999999999998776 2  333  9999999987 


Q ss_pred             CCCCCccceEEeccccccC-CCccccc----------ceEEEEecCcccHHHHHh
Q 023019          243 PFASSSIDAVHAGAAIHCW-SSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~-~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ++.+++||+|++..+++|. .+...++          |.+++.++......++.+
T Consensus       114 ~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  168 (194)
T 1dus_A          114 NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAK  168 (194)
T ss_dssp             TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHH
T ss_pred             ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHH
Confidence            3457789999999888762 3333343          999999988766665544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.52  E-value=1.1e-13  Score=123.69  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+  ...++.++.+|+.++| 
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC-
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC-
Confidence            355666777777899999999999999999988 55  99999999999999999987751  2356999999998875 


Q ss_pred             CCCccceEEeccccccCC--Cccccc----------ceEEEEecCcccH
Q 023019          245 ASSSIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~~~l  281 (288)
                        ++||+|++..+++|++  ++..++          |.+++.++.....
T Consensus       154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  200 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHP  200 (318)
T ss_dssp             --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCH
T ss_pred             --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCc
Confidence              7899999999999994  555555          9999998876553

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.52  E-value=4.1e-14  Score=130.17  Aligned_cols=104  Identities=18%  Similarity=0.273  Sum_probs=88.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCCCEEEEEecCCCC------
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-----SNFPKENFLLVRADISRL------  242 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~-----~g~~~~~i~~~~~d~~~l------  242 (288)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++++..     +.....++.++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            3468899999999999999998873 5679999999999999999987643     101236899999999987      


Q ss_pred             CCCCCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++++++||+|++..+++|++++..++          |.|++.++..
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            88899999999999999999988877          8888887654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.51  E-value=6.8e-14  Score=123.16  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...    ..++.++++|+..+++ +++||+|++.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~-~~~fD~i~~~  191 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI-QENYDFIVST  191 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCGGGCCC-CSCEEEEEEC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHc----CCceEEEEeccccccc-cCCccEEEEc
Confidence            3588999999999999999999976  9999999999999999998876    2389999999998887 7899999999


Q ss_pred             cccccCCCcc--ccc----------ceEEEEec
Q 023019          256 AAIHCWSSPS--TGV----------GVFFQVTL  276 (288)
Q Consensus       256 ~vl~h~~d~~--~~l----------G~lvi~t~  276 (288)
                      .+++|++++.  .++          |.+++.+.
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999997654  344          77676654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.50  E-value=4.5e-14  Score=118.60  Aligned_cols=99  Identities=21%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +..+...+.  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++         ++.+..+|+..++ .
T Consensus        34 ~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~   99 (211)
T 3e23_A           34 LTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-A   99 (211)
T ss_dssp             HHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-C
T ss_pred             HHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-C
Confidence            344444444  478999999999999999999866  9999999999999999874         4557889999888 7


Q ss_pred             CCccceEEeccccccCC--Cccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++..+++|++  ++..++          |.+++.+...
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            89999999999999998  555555          8888886543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=1.1e-13  Score=120.32  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++        ..++.++++|+.++++ +++||+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhh--------CCCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            468999999999999999999876  999999999999999987        3478999999999988 78999999998


Q ss_pred             -ccccCCCcc---ccc----------ceEEEEec
Q 023019          257 -AIHCWSSPS---TGV----------GVFFQVTL  276 (288)
Q Consensus       257 -vl~h~~d~~---~~l----------G~lvi~t~  276 (288)
                       +++|+++++   .++          |.+++.++
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             999997543   333          88887653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.50  E-value=1.5e-13  Score=116.26  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=85.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC--CCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~--lp~~  245 (288)
                      .+.+.+. .++.+|||||||+|.++..+++.+  .+++|+|+|+.+++.++++          ...++.+|+..  ++++
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~   90 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYE   90 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCC
Confidence            4455555 568899999999999999999885  5999999999999999864          23678999986  6777


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCcccHHH
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~e  283 (288)
                      +++||+|++..+++|++++..++          |.+++.++.......
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  138 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISV  138 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHH
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence            89999999999999999987766          899998877655443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.49  E-value=9.7e-14  Score=123.08  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=88.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      ...+.+...+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.....++.++++|+.+++
T Consensus        70 ~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           70 SEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             HHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            3345566666544 44999999999999999999875  89999999999999999987651000057999999999998


Q ss_pred             CCCCccceEEec-cccccCCC--ccccc----------ceEEEEecCcccH
Q 023019          244 FASSSIDAVHAG-AAIHCWSS--PSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       244 ~~~~sfD~V~~~-~vl~h~~d--~~~~l----------G~lvi~t~~~~~l  281 (288)
                      + +++||+|++. .+++|++.  ...++          |.|++.++.....
T Consensus       147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            7 7899999865 66776653  23334          9999999887654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.49  E-value=2.8e-14  Score=137.79  Aligned_cols=86  Identities=16%  Similarity=0.278  Sum_probs=77.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~~  255 (288)
                      +.+|||||||.|.++..|++.|.  +|+|||+|+.+++.|+..+.+.+   ..++.+.+++++++  ++++++||+|++.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            67999999999999999999987  99999999999999999987762   35799999999987  5677899999999


Q ss_pred             cccccCCCccccc
Q 023019          256 AAIHCWSSPSTGV  268 (288)
Q Consensus       256 ~vl~h~~d~~~~l  268 (288)
                      .+|||++|+....
T Consensus       142 e~~ehv~~~~~~~  154 (569)
T 4azs_A          142 SVFHHIVHLHGID  154 (569)
T ss_dssp             SCHHHHHHHHCHH
T ss_pred             cchhcCCCHHHHH
Confidence            9999999987654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=1.6e-13  Score=111.97  Aligned_cols=112  Identities=15%  Similarity=0.234  Sum_probs=91.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+...+...++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++... +  ..++.++.+|+.+ +++
T Consensus        24 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~-~~~   97 (183)
T 2yxd_A           24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKF-N--IKNCQIIKGRAED-VLD   97 (183)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT--SSEEEEEECSHHHHHHHHHHHHHT-T--CCSEEEEESCHHH-HGG
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHc-C--CCcEEEEECCccc-ccc
Confidence            455666667677889999999999999999983  359999999999999999998876 2  3579999999987 666


Q ss_pred             CCccceEEeccccccCCCccccc--------ceEEEEecCcccHHHHHhh
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV--------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l--------G~lvi~t~~~~~l~el~~~  287 (288)
                      +++||+|++..+    .++..++        |.+++.++....+.++.+.
T Consensus        98 ~~~~D~i~~~~~----~~~~~~l~~~~~~~gG~l~~~~~~~~~~~~~~~~  143 (183)
T 2yxd_A           98 KLEFNKAFIGGT----KNIEKIIEILDKKKINHIVANTIVLENAAKIINE  143 (183)
T ss_dssp             GCCCSEEEECSC----SCHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCcEEEECCc----ccHHHHHHHHhhCCCCEEEEEecccccHHHHHHH
Confidence            789999999988    3333333        8999999888887776653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=8.6e-13  Score=113.98  Aligned_cols=116  Identities=20%  Similarity=0.181  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADIS  240 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~  240 (288)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++.. +   ..++.+..+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~  158 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLE  158 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGG
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchh
Confidence            344566777777778999999999999999999998 65679999999999999999998764 3   468999999999


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +.++++++||+|++     +++++..++          |.+++.++....+.++.+
T Consensus       159 ~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  209 (258)
T 2pwy_A          159 EAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVR  209 (258)
T ss_dssp             GCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Confidence            88888889999998     466776666          899998887766655543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.48  E-value=7.2e-14  Score=115.20  Aligned_cols=104  Identities=11%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +..+..++..  ..+|||+|||+|.++..++...+..+|+++|+|+.|++.+++++...+  ...++.+  +|.... .+
T Consensus        40 Y~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~-~~  112 (200)
T 3fzg_A           40 YTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESD-VY  112 (200)
T ss_dssp             HHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHH-HT
T ss_pred             HHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--eccccc-CC
Confidence            4555666644  779999999999999999999888899999999999999999998862  1124554  666544 35


Q ss_pred             CCccceEEeccccccCCCccccc---------ceEEEEec
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV---------GVFFQVTL  276 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l---------G~lvi~t~  276 (288)
                      .++||+|++..+|||+++.+..+         |.++++-+
T Consensus       113 ~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          113 KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            68899999999999997776666         77777766

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.47  E-value=2.6e-13  Score=117.91  Aligned_cols=100  Identities=25%  Similarity=0.359  Sum_probs=82.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+.  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++..        . .++++|+.++++++
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~  112 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence            33444444  578999999999999999998865  99999999999999998731        1 28899999999989


Q ss_pred             CccceEEeccccccC-CCccccc----------ceEEEEecCcc
Q 023019          247 SSIDAVHAGAAIHCW-SSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~-~d~~~~l----------G~lvi~t~~~~  279 (288)
                      ++||+|++..+++|+ +++..++          |.+++.++...
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            999999999877776 6766666          88988887654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.47  E-value=1.6e-13  Score=114.34  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      + +|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+..+++++++||+|++.. 
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~-  102 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSIF-  102 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCTTTCSEEEEEC-
T ss_pred             C-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCcCCccEEEEEh-
Confidence            5 999999999999999998865  9999999999999999998876    3489999999999998889999999954 


Q ss_pred             cccCC--Cccccc----------ceEEEEecCcccH
Q 023019          258 IHCWS--SPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       258 l~h~~--d~~~~l----------G~lvi~t~~~~~l  281 (288)
                       .|++  ++..++          |.+++.++.....
T Consensus       103 -~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  137 (202)
T 2kw5_A          103 -CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL  137 (202)
T ss_dssp             -CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG
T ss_pred             -hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence             4442  344444          9999998765443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=7.1e-13  Score=116.32  Aligned_cols=111  Identities=19%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++... +   ..++.++.+|+.+ ++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence            45566667778899999999999999999987 55569999999999999999998764 2   4679999999987 66


Q ss_pred             CCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ++++||+|++     |++++..++          |.+++.+.......++.+
T Consensus       176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~  222 (275)
T 1yb2_A          176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL  222 (275)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHH
T ss_pred             cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence            6789999998     677777766          999999987766666544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.46  E-value=4.3e-13  Score=118.43  Aligned_cols=98  Identities=8%  Similarity=0.006  Sum_probs=78.4

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc
Q 023019          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD  250 (288)
                      ..+...++.+|||||||+|.++..+..+.++++|+|+|+|+.|++.|+++++.. |  ..++.++++|+.+++  +++||
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-g--l~~v~~v~gDa~~l~--d~~FD  190 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-G--VDGVNVITGDETVID--GLEFD  190 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-T--CCSEEEEESCGGGGG--GCCCS
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-C--CCCeEEEECchhhCC--CCCcC
Confidence            355677899999999999987755444434569999999999999999999887 3  278999999999876  78999


Q ss_pred             eEEeccccccCCCccccc----------ceEEEEec
Q 023019          251 AVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      +|++...   ++++.+++          |++++...
T Consensus       191 vV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          191 VLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9998665   45655555          88887664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.46  E-value=1.7e-13  Score=117.18  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+..  +.+|||||||+|.++..+++. .  +++|+|+|+.|++.|++++...    ..++.++++|+.+++++ 
T Consensus        25 ~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-   94 (243)
T 3d2l_A           25 AWVLEQVEP--GKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELELP-   94 (243)
T ss_dssp             HHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCCS-
T ss_pred             HHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCCC-
Confidence            445555554  689999999999999999887 4  9999999999999999998776    35789999999988876 


Q ss_pred             CccceEEecc-ccccCCCc---cccc----------ceEEEEecCcccHH
Q 023019          247 SSIDAVHAGA-AIHCWSSP---STGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       247 ~sfD~V~~~~-vl~h~~d~---~~~l----------G~lvi~t~~~~~l~  282 (288)
                      ++||+|++.. +++|+.++   ..++          |.+++.++.+..+.
T Consensus        95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  144 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKME  144 (243)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHH
T ss_pred             CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHH
Confidence            8899999986 99999544   3333          88888777665443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.46  E-value=8.2e-14  Score=123.45  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----------------------------
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----------------------------  227 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-----------------------------  227 (288)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999865579999999999999999986543100                             


Q ss_pred             --------------------------CCCCEEEEEecCCCCC-----CCCCccceEEeccccccCC------Cccccc--
Q 023019          228 --------------------------PKENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWS------SPSTGV--  268 (288)
Q Consensus       228 --------------------------~~~~i~~~~~d~~~lp-----~~~~sfD~V~~~~vl~h~~------d~~~~l--  268 (288)
                                                ...++.++++|+...+     +.+++||+|++..+++|+.      ++.+++  
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0147999999998654     5678999999999998875      455555  


Q ss_pred             --------ceEEEEecC
Q 023019          269 --------GVFFQVTLI  277 (288)
Q Consensus       269 --------G~lvi~t~~  277 (288)
                              |.|++....
T Consensus       206 ~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHEEEEEEEEEECCC
T ss_pred             HHHHhCCCcEEEEecCC
Confidence                    777776543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.46  E-value=1.2e-13  Score=123.01  Aligned_cols=100  Identities=14%  Similarity=0.085  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      .++.+|||||||+|.++..++ ...+..+|+|+|+|+.|++.|++++...+  ...++.++++|+.+++++ ++||+|++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc-CCeEEEEE
Confidence            458899999999999999985 44556799999999999999999987651  234599999999999987 99999999


Q ss_pred             ccccccCCCcccc---c----------ceEEEEecCc
Q 023019          255 GAAIHCWSSPSTG---V----------GVFFQVTLII  278 (288)
Q Consensus       255 ~~vl~h~~d~~~~---l----------G~lvi~t~~~  278 (288)
                      ..+++|++++...   +          |.+++.++..
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            9999999998863   3          8999888654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.46  E-value=1.1e-12  Score=113.30  Aligned_cols=117  Identities=23%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++..+  ...++.++.+|+.
T Consensus        78 ~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~  155 (255)
T 3mb5_A           78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIY  155 (255)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGG
T ss_pred             cHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchh
Confidence            3445567777888788999999999999999999998 666799999999999999999988762  1234999999998


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +. +++++||+|++     +.+++..++          |.+++..+......++.+
T Consensus       156 ~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  205 (255)
T 3mb5_A          156 EG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHE  205 (255)
T ss_dssp             GC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             hc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence            54 66788999998     466776666          899888887766666544

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.45  E-value=2e-13  Score=121.74  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC----CCCEEEEEecC------CCC--CC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KENFLLVRADI------SRL--PF  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~----~~~i~~~~~d~------~~l--p~  244 (288)
                      ++.+|||||||+|..+..++..+. .+|+|+|+|+.|++.|+++.... +..    ..++.+.++|+      ..+  ++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~-~~v~GiD~S~~~l~~A~~~~~~~-~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKL-NSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH-CC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHhc-cccccccccccchhhhhcccchhhhhhhccc
Confidence            478999999999986666555542 49999999999999999988765 100    01367888887      322  35


Q ss_pred             CCCccceEEeccccccCCCc---cccc----------ceEEEEecCcccHH
Q 023019          245 ASSSIDAVHAGAAIHCWSSP---STGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~---~~~l----------G~lvi~t~~~~~l~  282 (288)
                      ++++||+|++.+++||+-++   ..++          |.|+++++....+.
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~  176 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLS  176 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHT
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            67899999999999986332   3333          99999998765544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.45  E-value=3.1e-13  Score=119.08  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=85.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~  254 (288)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+  ...++.++++|+.++++ .+++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEE
Confidence            3578999999999999999888753 599999999999999999987651  12578999999999888 5889999999


Q ss_pred             cccccc----CCCccccc----------ceEEEEecCcccHH
Q 023019          255 GAAIHC----WSSPSTGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       255 ~~vl~h----~~d~~~~l----------G~lvi~t~~~~~l~  282 (288)
                      ..+++|    ..++..++          |.+++.++....+.
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  181 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL  181 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence            999987    34445454          99999988765544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.45  E-value=5.7e-13  Score=111.41  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+   ..++.++.+|+.+.+  +++||+|++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGA-KSVLATDISDESMTAAEENAALNG---IYDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcC---CCceEEEeccccccC--CCCceEEEEC
Confidence            3578999999999999999988643 699999999999999999988762   234999999997653  5899999999


Q ss_pred             cccccCC----Cccccc---ceEEEEecCcccHHHHHhh
Q 023019          256 AAIHCWS----SPSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       256 ~vl~h~~----d~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      .+++++.    ...+.|   |.+++.++......++.+.
T Consensus       133 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  171 (205)
T 3grz_A          133 ILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQA  171 (205)
T ss_dssp             SCHHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHH
Confidence            9988753    333334   9999988888777776653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=6.6e-13  Score=109.22  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++.+|+..+++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHh--------CCCCcEEEcccccCCCCCCceeEEEEC
Confidence            3588999999999999999999865  999999999999999987        356889999999988888999999998


Q ss_pred             -cccccCCCc--cccc----------ceEEEEecCc
Q 023019          256 -AAIHCWSSP--STGV----------GVFFQVTLII  278 (288)
Q Consensus       256 -~vl~h~~d~--~~~l----------G~lvi~t~~~  278 (288)
                       .+++|++.+  ..++          |.+++.....
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence             789988543  3344          8888877654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.45  E-value=6.6e-13  Score=112.98  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|++++...    . ++.++.+|+......
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~----~-~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY----N-NIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC----S-SEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc----C-CeEEEECCccccccc
Confidence            45666677777789999999999999999999874  9999999999999999997765    2 899999999873334


Q ss_pred             CCccceEEeccccccCCCccc-cc---ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPST-GV---GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~t~~~  278 (288)
                      +++||+|++..+++|+++... .|   |.+++.+...
T Consensus       132 ~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSS
T ss_pred             CCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            678999999999999975422 23   8888776543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.44  E-value=5.6e-13  Score=117.16  Aligned_cols=107  Identities=16%  Similarity=0.105  Sum_probs=84.8

Q ss_pred             HHHhhcC-CCCCCeEEEEcCcc---chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          168 LMKGYLK-PVLGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       168 ~l~~~l~-~~~~~~VLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .+.+++. .....+|||||||+   |.++..+.+..+..+|+|+|+|+.|++.|++++..     ..++.++++|+.+.+
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHH
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCch
Confidence            3334443 23347999999999   99988888777777999999999999999998744     357999999997631


Q ss_pred             -----------CCCCccceEEeccccccCCC--ccccc----------ceEEEEecCcc
Q 023019          244 -----------FASSSIDAVHAGAAIHCWSS--PSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       244 -----------~~~~sfD~V~~~~vl~h~~d--~~~~l----------G~lvi~t~~~~  279 (288)
                                 ++..+||+|++..+|||+++  +..++          |.|++..+..+
T Consensus       142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence                       33358999999999999998  55555          99999988764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.44  E-value=7.6e-13  Score=111.59  Aligned_cols=80  Identities=20%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~  254 (288)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++... +  ..++.++++|+..++  +++++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV-G--VPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-C--CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc-C--CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            478999999999999999999987779999999999999999998876 2  368999999999887  77889999999


Q ss_pred             ccccc
Q 023019          255 GAAIH  259 (288)
Q Consensus       255 ~~vl~  259 (288)
                      +....
T Consensus       118 ~~~~~  122 (214)
T 1yzh_A          118 NFSDP  122 (214)
T ss_dssp             ESCCC
T ss_pred             ECCCC
Confidence            86543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.44  E-value=2.5e-13  Score=110.75  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             HHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          164 KEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       164 ~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      .+.+.+.+.+..  .++.+|||+|||+|.++..+++.+   +|+|+|+|+.|++.       .     .++.++++|+.+
T Consensus         8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~-----~~~~~~~~d~~~   72 (170)
T 3q87_B            8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H-----RGGNLVRADLLC   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C-----SSSCEEECSTTT
T ss_pred             ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c-----cCCeEEECChhh
Confidence            333444444433  457799999999999999999887   99999999999987       1     367899999987


Q ss_pred             CCCCCCccceEEeccccccCCCc---------cccc---------ceEEEEecCcccHHHHHh
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSP---------STGV---------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~---------~~~l---------G~lvi~t~~~~~l~el~~  286 (288)
                       ++++++||+|+++..+++.++.         ...+         |.+++.........++.+
T Consensus        73 -~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpgG~l~~~~~~~~~~~~l~~  134 (170)
T 3q87_B           73 -SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEANRPKEVLA  134 (170)
T ss_dssp             -TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHCCSSEEEEEEEGGGCHHHHHH
T ss_pred             -hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhCCCCEEEEEEecCCCHHHHHH
Confidence             6667899999999998887665         1111         899998877777766654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.44  E-value=1.2e-13  Score=118.42  Aligned_cols=78  Identities=5%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|+++....    ..++.++++|+.++  ++++++||+|+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEEE
Confidence            4578999999999999999977654 48999999999999999988765    36799999999988  88899999999


Q ss_pred             e-cccc
Q 023019          254 A-GAAI  258 (288)
Q Consensus       254 ~-~~vl  258 (288)
                      + .+.+
T Consensus       134 ~d~~~~  139 (236)
T 1zx0_A          134 YDTYPL  139 (236)
T ss_dssp             ECCCCC
T ss_pred             ECCccc
Confidence            9 6654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.44  E-value=4.4e-13  Score=116.82  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=77.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-  244 (288)
                      .+.+...+...++.+|||||||+|.++..+++++.  +|+|+|+|+.|++.|++++...         ++..++.+++. 
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~  102 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAE  102 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeecccc
Confidence            35566777777899999999999999999999886  9999999999999999985432         23344444332 


Q ss_pred             ----CCCccceEEeccccccCCCcc--ccc---------ceEEEEecC
Q 023019          245 ----ASSSIDAVHAGAAIHCWSSPS--TGV---------GVFFQVTLI  277 (288)
Q Consensus       245 ----~~~sfD~V~~~~vl~h~~d~~--~~l---------G~lvi~t~~  277 (288)
                          .+++||+|++..+++|+...+  .++         |.++++...
T Consensus       103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lLPGG~l~lS~~~  150 (261)
T 3iv6_A          103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLVGSGTVRASVKL  150 (261)
T ss_dssp             CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTSEEEEEEEB
T ss_pred             cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhCcCcEEEEEecc
Confidence                257899999999999986432  233         888887653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.44  E-value=6.8e-13  Score=113.12  Aligned_cols=91  Identities=20%  Similarity=0.270  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe-
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~-  254 (288)
                      .++.+|||||||+|.++..+++.++  +++|+|+|+.|++.|+++        ..++.++.+|+..+++ +++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH--------CTTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh--------CCCCEEEECCHHHccc-CCCCcEEEEc
Confidence            4578999999999999999999987  999999999999999987        3568899999999887 789999995 


Q ss_pred             ccccccCCCcc---ccc----------ceEEEEecC
Q 023019          255 GAAIHCWSSPS---TGV----------GVFFQVTLI  277 (288)
Q Consensus       255 ~~vl~h~~d~~---~~l----------G~lvi~t~~  277 (288)
                      ..+++|++++.   .++          |.+++.++.
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            55999997643   333          888887654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=2.3e-13  Score=116.88  Aligned_cols=97  Identities=16%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC-----Cccc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-----SSID  250 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~-----~sfD  250 (288)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|++++.      ..++.++++|+.++++..     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4578999999999999999999988  99999999999999999852      348999999999875432     2499


Q ss_pred             eEEeccccccCC--Cccccc----------ceEEEEecCccc
Q 023019          251 AVHAGAAIHCWS--SPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       251 ~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~~~  280 (288)
                      +|++..+++|++  ++..++          |.+++..+....
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  168 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC  168 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence            999999999998  555665          888888876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.43  E-value=1.1e-13  Score=114.59  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~  253 (288)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|+++++.. +  ..++.++++|+.+++  +++++||+|+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~fD~i~  118 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGA-ASVLFVESDQRSAAVIARNIEAL-G--LSGATLRRGAVAAVVAAGTTSPVDLVL  118 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEECCHHHHHHHHHHHHHH-T--CSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHc-C--CCceEEEEccHHHHHhhccCCCccEEE
Confidence            4588999999999999998887654 58999999999999999999887 2  368999999998764  4468999999


Q ss_pred             eccccccC-CCccc---------cc---ceEEEEecCccc
Q 023019          254 AGAAIHCW-SSPST---------GV---GVFFQVTLIIHV  280 (288)
Q Consensus       254 ~~~vl~h~-~d~~~---------~l---G~lvi~t~~~~~  280 (288)
                      +...+++. ++...         .|   |.+++.+.....
T Consensus       119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~  158 (189)
T 3p9n_A          119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA  158 (189)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred             ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence            98887764 33322         33   888888765443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.42  E-value=8.4e-13  Score=117.83  Aligned_cols=106  Identities=20%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCCCEEEEEecCCCCC----CC--C
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----FPKENFLLVRADISRLP----FA--S  246 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g----~~~~~i~~~~~d~~~lp----~~--~  246 (288)
                      ++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.    ....++.++++|+..++    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            57899999999999999998753 36999999999999999998765300    01347999999999876    54  4


Q ss_pred             CccceEEeccccccC-CCc---cccc----------ceEEEEecCcccHHH
Q 023019          247 SSIDAVHAGAAIHCW-SSP---STGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~-~d~---~~~l----------G~lvi~t~~~~~l~e  283 (288)
                      ++||+|++..++||+ .++   ..++          |.++++++..+.+.+
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~  163 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIR  163 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHH
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHH
Confidence            599999999999998 443   3444          999999988765543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.42  E-value=9.9e-13  Score=117.83  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=88.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+. ..+|+|+|+|+.+++.|+++++..+   ..++.+..+|+.+.+.
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChhhccc
Confidence            35566777777899999999999999999999876 3579999999999999999988762   3569999999988655


Q ss_pred             CCCccceEEeccccccCCCcc-ccc---ceEEEEecC
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVTLI  277 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t~~  277 (288)
                      .+++||+|++..+++|+++.. +.|   |.+++....
T Consensus       141 ~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             GGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCB
T ss_pred             cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence            678999999999999997422 222   888777543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=1.5e-12  Score=109.54  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=86.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ..+.+.+...++.+|||||||+|.++..+++.+ +..+|+++|+++.+++.|++++...+   ..++.+..+|+......
T Consensus        67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  143 (215)
T 2yxe_A           67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGYEP  143 (215)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCCGG
T ss_pred             HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCC
Confidence            455666666778999999999999999999886 44699999999999999999987762   35699999998543323


Q ss_pred             CCccceEEeccccccCCCcc-ccc---ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t~~~  278 (288)
                      +++||+|++..+++|+++.. +.|   |.+++.....
T Consensus       144 ~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          144 LAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSS
T ss_pred             CCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCC
Confidence            67899999999999997532 233   7887776543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.41  E-value=3.3e-12  Score=111.90  Aligned_cols=118  Identities=16%  Similarity=0.234  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADIS  240 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~  240 (288)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++... ++ ...++.++.+|+.
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~~  163 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLA  163 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECchH
Confidence            444566777777778899999999999999999985 55569999999999999999987653 10 1357999999999


Q ss_pred             CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +.++++++||+|++     +++++..++          |.+++.++....+.++.+
T Consensus       164 ~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  214 (280)
T 1i9g_A          164 DSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE  214 (280)
T ss_dssp             GCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             hcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Confidence            88887889999998     456666665          999999988776666543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.41  E-value=7e-13  Score=112.08  Aligned_cols=79  Identities=16%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~  254 (288)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|++++...+   ..++.++++|+..++  +++++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            4779999999999999999999777899999999999999999988762   467999999998876  77889999987


Q ss_pred             cccc
Q 023019          255 GAAI  258 (288)
Q Consensus       255 ~~vl  258 (288)
                      .+..
T Consensus       115 ~~~~  118 (213)
T 2fca_A          115 NFSD  118 (213)
T ss_dssp             ESCC
T ss_pred             ECCC
Confidence            6543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=8.2e-13  Score=111.72  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      +.+|||||||+|.++..+++.      +|+|+|+.|++.++++          ++.++.+|+..+++++++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            789999999999999988653      9999999999999874          578999999999988899999999999


Q ss_pred             cccCCCccccc----------ceEEEEecCcccH
Q 023019          258 IHCWSSPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       258 l~h~~d~~~~l----------G~lvi~t~~~~~l  281 (288)
                      ++|++++..++          |.+++.++...+.
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  145 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESF  145 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccH
Confidence            99999988777          8899988766543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.40  E-value=2.7e-13  Score=114.36  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=80.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PF  244 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~  244 (288)
                      .+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++         .++.+..+|+..+   ++
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCS
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhccccc
Confidence            344444444578999999999999999999866  999999999999999985         3566788887765   54


Q ss_pred             CC-CccceEEeccccccCCCccccc----------ceEEEEecCcc
Q 023019          245 AS-SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       245 ~~-~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      .. ++||+|++..+++ .+++..++          |.+++.++.+.
T Consensus       112 ~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          112 PVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             CCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            44 4599999999999 77887777          99999887543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.40  E-value=6.2e-13  Score=109.08  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=90.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...+  ...++.+..+|+.+ +++
T Consensus        22 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~~~   96 (192)
T 1l3i_A           22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPE-ALC   96 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHH-HHT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHH-hcc
Confidence            4556666677778999999999999999999887  499999999999999999987761  12589999999876 333


Q ss_pred             C-CccceEEeccccccCCCccc----cc---ceEEEEecCcccHHHHHh
Q 023019          246 S-SSIDAVHAGAAIHCWSSPST----GV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~-~sfD~V~~~~vl~h~~d~~~----~l---G~lvi~t~~~~~l~el~~  286 (288)
                      + ++||+|++..+++|+...-.    .+   |.+++.++......++.+
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~  145 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAME  145 (192)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHH
T ss_pred             cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHH
Confidence            3 58999999988766532221    12   899998888777766554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.40  E-value=1.4e-12  Score=107.24  Aligned_cols=75  Identities=21%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccceEEe
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA  254 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~V~~  254 (288)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.|+++++.. +  ..++.+++++...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~-~--~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDL-G--IENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHH-T--CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            358899999999999999999885  49999999999999999999876 2  368999998887753 45788999988


Q ss_pred             c
Q 023019          255 G  255 (288)
Q Consensus       255 ~  255 (288)
                      +
T Consensus        96 ~   96 (185)
T 3mti_A           96 N   96 (185)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.40  E-value=6e-13  Score=113.07  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C--CCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~sfD~V~  253 (288)
                      ++.+|||||||+|.++..+++..+...|+|+|+|+.|++.|++++...+   ..++.++++|+.++ +  +++++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            4779999999999999999999887899999999999999999988762   46799999999874 3  6789999999


Q ss_pred             eccccccCCCcc--------ccc----------ceEEEEecCcccHHH
Q 023019          254 AGAAIHCWSSPS--------TGV----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       254 ~~~vl~h~~d~~--------~~l----------G~lvi~t~~~~~l~e  283 (288)
                      +.+...+.....        .++          |.|++.+-......+
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~  158 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEH  158 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Confidence            875443322211        122          999998865544433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=112.34  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCCCEEEEEecCCC-CC--CCCCcc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISR-LP--FASSSI  249 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---g~~~~~i~~~~~d~~~-lp--~~~~sf  249 (288)
                      .++.+|||||||+|.++..+++..+...|+|+|+|+.|++.|++++....   .....++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34678999999999999999998877899999999999999998865310   0114689999999987 66  788999


Q ss_pred             ceEEeccc
Q 023019          250 DAVHAGAA  257 (288)
Q Consensus       250 D~V~~~~v  257 (288)
                      |.|++.+.
T Consensus       125 D~v~~~~~  132 (235)
T 3ckk_A          125 TKMFFLFP  132 (235)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCC
Confidence            99987543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.38  E-value=5.3e-12  Score=110.72  Aligned_cols=116  Identities=23%  Similarity=0.257  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++...+  ...++.++.+|+.+
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  175 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISE  175 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHH
Confidence            344566777777778999999999999999999998 666799999999999999999987751  12579999999987


Q ss_pred             CCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      . +++++||+|++     +.+++..++          |.+++.+.....+.++.+
T Consensus       176 ~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (277)
T 1o54_A          176 G-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLK  224 (277)
T ss_dssp             C-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             c-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence            6 66678999998     456666665          889998887655555543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.38  E-value=2.2e-13  Score=118.76  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------------------------
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------------------  228 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------------------------  228 (288)
                      ...++.+|||||||+|.+...++..+. .+|+|+|+|+.|++.|+++++...+..                         
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            345678999999999988887776664 379999999999999998875531000                         


Q ss_pred             -CCCEE-EEEecCCCC-CCC---CCccceEEeccccccC-CC---ccccc----------ceEEEEecC
Q 023019          229 -KENFL-LVRADISRL-PFA---SSSIDAVHAGAAIHCW-SS---PSTGV----------GVFFQVTLI  277 (288)
Q Consensus       229 -~~~i~-~~~~d~~~l-p~~---~~sfD~V~~~~vl~h~-~d---~~~~l----------G~lvi~t~~  277 (288)
                       ..++. ++++|+... |++   .++||+|++.++|||+ ++   ...++          |.|++++..
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             01233 889999873 443   5799999999999996 33   23333          999998753

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.38  E-value=4.9e-12  Score=107.48  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceE
Q 023019          175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAV  252 (288)
Q Consensus       175 ~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V  252 (288)
                      ..++.+|||+||| +|.++..+++.. ..+|+|+|+|+.|++.|++++...    ..++.++++|+..+ ++++++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN----NSNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT----TCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh----CCCcEEEeCCchhhhhcccCceeEE
Confidence            3468899999999 999999999983 249999999999999999999887    23899999997543 4557899999


Q ss_pred             EeccccccCC
Q 023019          253 HAGAAIHCWS  262 (288)
Q Consensus       253 ~~~~vl~h~~  262 (288)
                      +++-.+.+.+
T Consensus       128 ~~npp~~~~~  137 (230)
T 3evz_A          128 FSAPPYYDKP  137 (230)
T ss_dssp             EECCCCC---
T ss_pred             EECCCCcCCc
Confidence            9987665544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.38  E-value=3.3e-12  Score=109.94  Aligned_cols=101  Identities=22%  Similarity=0.287  Sum_probs=78.8

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+.+++++ ++
T Consensus        33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~  105 (252)
T 1wzn_A           33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NE  105 (252)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SC
T ss_pred             HHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhcccC-CC
Confidence            33344445678999999999999999999876  9999999999999999998776    34799999999988865 68


Q ss_pred             cceEEecc-ccccCC--Cccccc----------ceEEEEec
Q 023019          249 IDAVHAGA-AIHCWS--SPSTGV----------GVFFQVTL  276 (288)
Q Consensus       249 fD~V~~~~-vl~h~~--d~~~~l----------G~lvi~t~  276 (288)
                      ||+|++.. .++|++  ++..++          |.+++..+
T Consensus       106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            99999874 455553  233333          77776554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.38  E-value=3.2e-13  Score=116.03  Aligned_cols=95  Identities=6%  Similarity=0.155  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      .+|.+|||||||+|..+..+++..+ .+++|||+|+.|++.|+++....    ..++.++.+|+..+  ++++++||.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceEE
Confidence            4588999999999999999988765 58999999999999999998776    56788999998754  57788999997


Q ss_pred             e-----ccccccCCCccccc----------ceEEEEe
Q 023019          254 A-----GAAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       254 ~-----~~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                      .     ..+++|++++..++          |+|++..
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4     56777887776665          7777643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.37  E-value=5.4e-12  Score=115.71  Aligned_cols=112  Identities=16%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-CCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-~~~i~~~~~d~~~lp~  244 (288)
                      .+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++... +.. ..++.++.+|+.+ ++
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n-gl~~~~~v~~~~~D~~~-~~  288 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-GV  288 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGGGEEEEECSTTT-TC
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc-CCCcCceEEEEechhhc-cC
Confidence            45677788777778999999999999999999987779999999999999999998876 211 1358899999987 56


Q ss_pred             CCCccceEEeccccccCCCccc-----cc----------ceEEEEecCcc
Q 023019          245 ASSSIDAVHAGAAIHCWSSPST-----GV----------GVFFQVTLIIH  279 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~-----~l----------G~lvi~t~~~~  279 (288)
                      ++++||+|+++..+++......     ++          |.+++......
T Consensus       289 ~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          289 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            6789999999998886433221     12          88888765443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.36  E-value=3.3e-12  Score=109.29  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+   ..++.+..+|+ ..+++
T Consensus        80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~~~  154 (235)
T 1jg1_A           80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKGFP  154 (235)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGCCG
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccCCC
Confidence            34556666667788999999999999999999874 599999999999999999988762   35699999997 34444


Q ss_pred             CC-ccceEEeccccccCCCcc-ccc---ceEEEEecCc
Q 023019          246 SS-SIDAVHAGAAIHCWSSPS-TGV---GVFFQVTLII  278 (288)
Q Consensus       246 ~~-sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t~~~  278 (288)
                      +. .||+|++..+++++++.. +.|   |.+++.+...
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSS
T ss_pred             CCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            43 599999999999987532 233   8888887654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.36  E-value=6.2e-12  Score=106.92  Aligned_cols=70  Identities=17%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC-CCCCCC-CCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFA-SSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~-~~lp~~-~~sfD~V~  253 (288)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++        ..++.++++|+ ..+|++ +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            3578999999999999999999865  999999999999999987        35789999999 578888 89999999


Q ss_pred             ec
Q 023019          254 AG  255 (288)
Q Consensus       254 ~~  255 (288)
                      +.
T Consensus       117 ~~  118 (226)
T 3m33_A          117 SR  118 (226)
T ss_dssp             EE
T ss_pred             eC
Confidence            97

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.36  E-value=1e-12  Score=110.94  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCCCCCCCccce
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDA  251 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~sfD~  251 (288)
                      +...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.+.++++.. ......++.++++|+.++|+.+++ |.
T Consensus        23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~  101 (218)
T 3mq2_A           23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GE  101 (218)
T ss_dssp             HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EE
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CE
Confidence            3445688999999999999999999977779999999999988644333221 001145899999999999988777 77


Q ss_pred             EEec---ccc--ccCCCccccc----------ceEEEEe
Q 023019          252 VHAG---AAI--HCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       252 V~~~---~vl--~h~~d~~~~l----------G~lvi~t  275 (288)
                      |+..   ..+  +|++++..++          |.+++..
T Consensus       102 v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          102 LHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            7633   233  3888888777          7777754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.36  E-value=1e-11  Score=111.93  Aligned_cols=123  Identities=19%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcC------CC--CCCCEE
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------NF--PKENFL  233 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~------g~--~~~~i~  233 (288)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++...+      +.  ...++.
T Consensus        91 ~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            334566667777778999999999999999999987 666799999999999999999987530      00  125799


Q ss_pred             EEEecCCCC--CCCCCccceEEecccccc--CCCccccc---ceEEEEecCcccHHHHH
Q 023019          234 LVRADISRL--PFASSSIDAVHAGAAIHC--WSSPSTGV---GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       234 ~~~~d~~~l--p~~~~sfD~V~~~~vl~h--~~d~~~~l---G~lvi~t~~~~~l~el~  285 (288)
                      ++.+|+.+.  ++++++||+|++...-.+  +....+.|   |.+++.......+.++.
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~  229 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELL  229 (336)
T ss_dssp             EEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             EEECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence            999999886  566778999998432111  11112222   88888887766555543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.35  E-value=5.3e-12  Score=115.94  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ...+.++++|+.+.+.++++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~----~~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEAN----ALKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc----CCCeEEEEcchhhccccCCCeEEEEEC
Confidence            3578999999999999999999875  9999999999999999999876    345899999999988777899999999


Q ss_pred             cccccC-----CCccccc----------ceEEEEecCcccH
Q 023019          256 AAIHCW-----SSPSTGV----------GVFFQVTLIIHVV  281 (288)
Q Consensus       256 ~vl~h~-----~d~~~~l----------G~lvi~t~~~~~l  281 (288)
                      ..+++.     .+...++          |.+++.+......
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~  346 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY  346 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh
Confidence            999882     2233333          8888877554333

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.35  E-value=2.7e-12  Score=111.17  Aligned_cols=79  Identities=10%  Similarity=-0.035  Sum_probs=68.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCccceE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  252 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~sfD~V  252 (288)
                      .++.+|||||||+|..+..++...+..+|+++|+|+.+++.|++++...+   ..++.++++|+++++..   +++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEE
Confidence            46789999999999999999998777899999999999999999988772   34699999999887653   4799999


Q ss_pred             Eeccc
Q 023019          253 HAGAA  257 (288)
Q Consensus       253 ~~~~v  257 (288)
                      ++..+
T Consensus       156 ~s~a~  160 (249)
T 3g89_A          156 VARAV  160 (249)
T ss_dssp             EEESS
T ss_pred             EECCc
Confidence            99754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.35  E-value=6.2e-12  Score=107.26  Aligned_cols=94  Identities=13%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFA  245 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~  245 (288)
                      .+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++++..     .++.++.+|+..    +++.
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~  141 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV  141 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC
Confidence            3444555788999999999999999999854569999999999999999986543     689999999998    7776


Q ss_pred             CCccceEEeccccccCCCc---cccc----------ceEEEE
Q 023019          246 SSSIDAVHAGAAIHCWSSP---STGV----------GVFFQV  274 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~---~~~l----------G~lvi~  274 (288)
                       ++||+|+     ++++++   ..++          |.+++.
T Consensus       142 -~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 -EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             -CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence             7899998     556666   4333          777775

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.35  E-value=5.8e-12  Score=114.02  Aligned_cols=98  Identities=18%  Similarity=0.320  Sum_probs=78.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|+++++..+  ...++.++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC-CEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCCC
Confidence            3444555556688999999999999999999863 5999999997 9999999987761  2368999999999999888


Q ss_pred             CccceEEecc---ccccCCCccccc
Q 023019          247 SSIDAVHAGA---AIHCWSSPSTGV  268 (288)
Q Consensus       247 ~sfD~V~~~~---vl~h~~d~~~~l  268 (288)
                      ++||+|++..   .+.|..++..++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l  154 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVL  154 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHH
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHH
Confidence            9999999876   455555555444

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.35  E-value=5.3e-12  Score=113.37  Aligned_cols=108  Identities=14%  Similarity=0.237  Sum_probs=87.4

Q ss_pred             HHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          167 ELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       167 ~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ..+.+.+..  .++.+|||||||+|.++..+++..+..+++++|++ .+++.|++++...+  ...++.++.+|+.+.++
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCC
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCC
Confidence            344455554  56789999999999999999999777799999999 99999999987651  12469999999998777


Q ss_pred             CCCccceEEeccccccCCCcc--ccc----------ceEEEEecCc
Q 023019          245 ASSSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLII  278 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~~  278 (288)
                      +++ ||+|++.+++||++++.  .++          |.+++..+..
T Consensus       230 ~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          230 GND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             CSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            654 99999999999997663  444          8888887654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.35  E-value=7.4e-12  Score=114.26  Aligned_cols=105  Identities=12%  Similarity=0.126  Sum_probs=85.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...+  ...++.++.+|+.+ +++.
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLPV  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSC
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-cCCC
Confidence            3455555556688999999999999999999987789999999 999999999987751  23479999999975 3333


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEec
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTL  276 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~  276 (288)
                       .||+|++.+++||++++.  .++          |.+++..+
T Consensus       248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             399999999999999875  444          88888877

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.34  E-value=7.4e-12  Score=113.88  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...++.++.+|+.+.++++
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  256 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE  256 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCCCC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCCCC
Confidence            4555666666688999999999999999999987789999999 999999999988751  2346999999999887765


Q ss_pred             CccceEEeccccccCCC--ccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSS--PSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d--~~~~l----------G~lvi~t~~  277 (288)
                      .  |+|++.+++||+++  ...++          |.+++.++.
T Consensus       257 ~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          257 A--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             C--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            4  99999999999988  44444          888887754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.34  E-value=4.1e-13  Score=112.29  Aligned_cols=87  Identities=21%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+|+.|++.|++++...    ..++.++++|+.+ +++
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~-~~~   93 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF----GAVVDWAAADGIE-WLI   93 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh----CCceEEEEcchHh-hhh
Confidence            444555543 5688999999999999999999977679999999999999999988765    1278889999877 555


Q ss_pred             C-----CccceEEecccc
Q 023019          246 S-----SSIDAVHAGAAI  258 (288)
Q Consensus       246 ~-----~sfD~V~~~~vl  258 (288)
                      +     ++||+|+++..+
T Consensus        94 ~~~~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           94 ERAERGRPWHAIVSNPPY  111 (215)
T ss_dssp             HHHHTTCCBSEEEECCCC
T ss_pred             hhhhccCcccEEEECCCC
Confidence            5     899999996443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.34  E-value=1.1e-12  Score=113.53  Aligned_cols=103  Identities=15%  Similarity=0.304  Sum_probs=78.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------------------------
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------------------  228 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------------------------  228 (288)
                      ...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++....+..                         
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            335678999999999999999988775 589999999999999999876530000                         


Q ss_pred             -CCCE-EEEEecCCCCC-CCC---CccceEEeccccc----cCCCccccc----------ceEEEEecC
Q 023019          229 -KENF-LLVRADISRLP-FAS---SSIDAVHAGAAIH----CWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       229 -~~~i-~~~~~d~~~lp-~~~---~sfD~V~~~~vl~----h~~d~~~~l----------G~lvi~t~~  277 (288)
                       ..++ .++++|+.+.+ +++   ++||+|++..+++    |++++..++          |.+++.+..
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence             0027 89999998764 355   8999999999999    544555544          888887643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.34  E-value=1.1e-11  Score=113.19  Aligned_cols=107  Identities=9%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...++.+..+|+. .+++.
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~-~~~p~  267 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFF-ETIPD  267 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-TCCCS
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCC-CCCCC
Confidence            3445555556678999999999999999999988889999999 999999999987751  2468999999998 45555


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~~  278 (288)
                       .||+|++.+++||++++.  +.+          |++++..+..
T Consensus       268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             899999999999999876  344          9998877643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.34  E-value=7.5e-13  Score=110.93  Aligned_cols=99  Identities=9%  Similarity=0.075  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~  255 (288)
                      ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|+++++.. +  ..++.++++|+.+ ++..+++||+|++.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~-~--~~~v~~~~~D~~~~~~~~~~~fD~V~~~  129 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL-K--AGNARVVNSNAMSFLAQKGTPHNIVFVD  129 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-T--CCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence            478999999999999998877764 49999999999999999998876 2  2689999999876 56667899999997


Q ss_pred             cccccCCCcccc---------c---ceEEEEecCccc
Q 023019          256 AAIHCWSSPSTG---------V---GVFFQVTLIIHV  280 (288)
Q Consensus       256 ~vl~h~~d~~~~---------l---G~lvi~t~~~~~  280 (288)
                      ..++ ..+...+         |   |.+++.+.....
T Consensus       130 ~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~  165 (202)
T 2fpo_A          130 PPFR-RGLLEETINLLEDNGWLADEALIYVESEVENG  165 (202)
T ss_dssp             CSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred             CCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence            6643 3332222         3   788877765443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.34  E-value=1.1e-11  Score=105.04  Aligned_cols=102  Identities=21%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCCCEEEEEecCCCCCCCCCccc
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISRLPFASSSID  250 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~---~~~~i~~~~~d~~~lp~~~~sfD  250 (288)
                      ..++.+|||||||+|.++..+++. ++..+|+|+|+++.+++.+++++... +.   ...++.++.+|+...+..+++||
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-cccccCCCcEEEEECCcccCcccCCCcC
Confidence            456889999999999999999987 45469999999999999999998764 10   02479999999987666678899


Q ss_pred             eEEeccccccCCCc-cccc---ceEEEEecC
Q 023019          251 AVHAGAAIHCWSSP-STGV---GVFFQVTLI  277 (288)
Q Consensus       251 ~V~~~~vl~h~~d~-~~~l---G~lvi~t~~  277 (288)
                      +|++..+++++.+. .+.|   |.+++.+..
T Consensus       154 ~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          154 AIHVGAAAPVVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEECSBBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCchHHHHHHHHHhcCCCcEEEEEEec
Confidence            99999999887543 2233   888887654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.34  E-value=2.7e-11  Score=103.85  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=91.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .....+...+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|++++... + ...++.+..+|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           78 KDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKF-N-LGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHT-T-CCTTEEEECSCTTTSC
T ss_pred             hhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHc-C-CCCcEEEEEcChhhcc
Confidence            344567777777778999999999999999999884  59999999999999999998775 1 1267999999998754


Q ss_pred             CCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~  287 (288)
                      +++++||+|++     +.+++..++          |.+++.++....+.++.+.
T Consensus       154 ~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  202 (248)
T 2yvl_A          154 VPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLES  202 (248)
T ss_dssp             CCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHH
T ss_pred             cCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Confidence            45678999997     455665555          9999999877676666543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.33  E-value=7.5e-12  Score=107.91  Aligned_cols=79  Identities=15%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCCCEEEEEecCCC-CC--CCCCc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----PKENFLLVRADISR-LP--FASSS  248 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-----~~~~i~~~~~d~~~-lp--~~~~s  248 (288)
                      ++.+|||||||+|.++..+++.++...|+|+|+|+.|++.|++++......     ...++.++++|+.+ ++  +++++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            477999999999999999999987679999999999999999987653000     13589999999987 66  77889


Q ss_pred             cceEEec
Q 023019          249 IDAVHAG  255 (288)
Q Consensus       249 fD~V~~~  255 (288)
                      +|.|+..
T Consensus       129 ~d~v~~~  135 (246)
T 2vdv_E          129 LSKMFFC  135 (246)
T ss_dssp             EEEEEEE
T ss_pred             cCEEEEE
Confidence            9999853

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.33  E-value=7.2e-12  Score=107.57  Aligned_cols=93  Identities=18%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCccceE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  252 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~sfD~V  252 (288)
                      .++.+|||||||+|.++..++...+..+|+|+|+|+.|++.|++++... +  ..++.++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-Q--LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-T--CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCEEEEeccHHHhcccccccCCccEE
Confidence            3578999999999999999997666679999999999999999998876 2  34699999999887754   6799999


Q ss_pred             EeccccccCCCccccc----------ceEEEEe
Q 023019          253 HAGAAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       253 ~~~~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                      ++..+    .++..++          |.+++..
T Consensus       146 ~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          146 TARAV----ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEECC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEecc----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            99763    3444433          7777653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.33  E-value=3.3e-12  Score=105.93  Aligned_cols=81  Identities=16%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~V~  253 (288)
                      .++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++...+  ...++.++++|+.+++ +.+++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceEEE
Confidence            45889999999999999999987 345699999999999999999988761  1257999999998875 5668999999


Q ss_pred             ecccc
Q 023019          254 AGAAI  258 (288)
Q Consensus       254 ~~~vl  258 (288)
                      +...+
T Consensus        99 ~~~~~  103 (197)
T 3eey_A           99 FNLGY  103 (197)
T ss_dssp             EEESB
T ss_pred             EcCCc
Confidence            98765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.33  E-value=7.2e-12  Score=112.69  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=83.9

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      +...+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...++.+..+|+. .+++. +||+|
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~-~~~p~-~~D~v  239 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFF-DPLPA-GAGGY  239 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-SCCCC-SCSEE
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCC-CCCCC-CCcEE
Confidence            3334568999999999999999999988889999999 999999999987751  2368999999997 45544 89999


Q ss_pred             EeccccccCCCc--cccc----------ceEEEEecCc
Q 023019          253 HAGAAIHCWSSP--STGV----------GVFFQVTLII  278 (288)
Q Consensus       253 ~~~~vl~h~~d~--~~~l----------G~lvi~t~~~  278 (288)
                      ++.+++||++++  .+++          |++++..+..
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            999999999986  4444          9998887653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.32  E-value=1.1e-12  Score=115.74  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------------C--------------
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------K--------------  229 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------------~--------------  229 (288)
                      ++.+|||||||+|.+...++... ..+|+|+|+|+.|++.|++++....+..             .              
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            57899999999999554444432 2499999999999999998764320000             0              


Q ss_pred             CCEEEEEecCCC-CCC-----CCCccceEEecccccc----CCCccccc----------ceEEEEe
Q 023019          230 ENFLLVRADISR-LPF-----ASSSIDAVHAGAAIHC----WSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       230 ~~i~~~~~d~~~-lp~-----~~~sfD~V~~~~vl~h----~~d~~~~l----------G~lvi~t  275 (288)
                      ..+.++.+|+.. +|+     ++++||+|+++.+++|    ++++..++          |.|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            015677789987 664     3467999999999999    55566555          8888764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.32  E-value=1e-11  Score=103.75  Aligned_cols=101  Identities=20%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...+   ..++.++.+|+.+++ +.++||+|++..
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            3789999999999999999998666799999999999999999988762   345999999999876 457899999854


Q ss_pred             ccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          257 AIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       257 vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +    .++..++          |.+++. .......++.+
T Consensus       141 ~----~~~~~~l~~~~~~L~~gG~l~~~-~~~~~~~~~~~  175 (207)
T 1jsx_A          141 F----ASLNDMVSWCHHLPGEQGRFYAL-KGQMPEDEIAL  175 (207)
T ss_dssp             S----SSHHHHHHHHTTSEEEEEEEEEE-ESSCCHHHHHT
T ss_pred             c----CCHHHHHHHHHHhcCCCcEEEEE-eCCCchHHHHH
Confidence            2    2333333          666555 44445555544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.32  E-value=1.8e-12  Score=111.05  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+  ...++.++++|+.+++ ++++||+|++..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~D~v~~~~  152 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA-SFLKADVVFLSP  152 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG-GGCCCSEEEECC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc-ccCCCCEEEECC
Confidence            588999999999999999999875  99999999999999999988761  1248999999998876 568999999999


Q ss_pred             ccccCCCccccc
Q 023019          257 AIHCWSSPSTGV  268 (288)
Q Consensus       257 vl~h~~d~~~~l  268 (288)
                      +++|..++...+
T Consensus       153 ~~~~~~~~~~~~  164 (241)
T 3gdh_A          153 PWGGPDYATAET  164 (241)
T ss_dssp             CCSSGGGGGSSS
T ss_pred             CcCCcchhhhHH
Confidence            999887765433

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.32  E-value=1.9e-12  Score=108.40  Aligned_cols=100  Identities=13%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC--CCCc-cceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--ASSS-IDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~--~~~s-fD~V~  253 (288)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++... +....++.++++|+.++..  .+++ ||+|+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  130 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  130 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHh-CCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence            478999999999999998777764 58999999999999999998876 2111589999999876432  3678 99999


Q ss_pred             eccccccCCCccc---------cc---ceEEEEecCcc
Q 023019          254 AGAAIHCWSSPST---------GV---GVFFQVTLIIH  279 (288)
Q Consensus       254 ~~~vl~h~~d~~~---------~l---G~lvi~t~~~~  279 (288)
                      +...++ ..+...         .|   |.+++.+....
T Consensus       131 ~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          131 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             ECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            987743 333222         23   77777765543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.32  E-value=2.7e-12  Score=117.65  Aligned_cols=108  Identities=10%  Similarity=0.036  Sum_probs=83.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-------hcCCCCCCCEEEEEec
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLVRAD  238 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~-------~~~g~~~~~i~~~~~d  238 (288)
                      +..+++.+...++.+|||||||+|.++..++...+..+|+|||+++.|++.|+++++       .. |....++.++++|
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~-Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY-GKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-TBCCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-CCCCCCeEEEECc
Confidence            566777778888999999999999999999877544479999999999999987642       22 2223689999999


Q ss_pred             CCCCCCCC--CccceEEeccccccCCCccccc----------ceEEEEe
Q 023019          239 ISRLPFAS--SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       239 ~~~lp~~~--~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                      +.++|+.+  ..||+|+++..+ +.++....|          |+|++..
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             ccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEee
Confidence            99998754  479999998776 445555555          6666653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.31  E-value=7.2e-12  Score=113.78  Aligned_cols=89  Identities=15%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|+++++..+  ...++.++++|++++++++++||+|++.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~-~~v~gvD~s~-~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~Iis~  140 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSS-ISDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIIISE  140 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTC-SEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCC-CEEEEECcHH-HHHHHHHHHHHcC--CCCcEEEEECcHHHccCCCCceEEEEEc
Confidence            4578999999999999999999853 5999999995 9999999988762  2345999999999999988999999997


Q ss_pred             ccccc---CCCccccc
Q 023019          256 AAIHC---WSSPSTGV  268 (288)
Q Consensus       256 ~vl~h---~~d~~~~l  268 (288)
                      .+.++   ..++..++
T Consensus       141 ~~~~~l~~~~~~~~~l  156 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVL  156 (349)
T ss_dssp             CCBBTBTBTCCHHHHH
T ss_pred             cccccccCchhHHHHH
Confidence            65443   35555444

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=8.5e-12  Score=105.86  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCCCEEEEEecCCCCC---
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISRLP---  243 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~l~~A~~~~~~~~g~---~~~~i~~~~~d~~~lp---  243 (288)
                      ..++.+|||||||+|.++..+++..     +..+|+|+|+++.+++.|++++... +.   ...++.++.+|+....   
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-CccccccCCEEEEECChHhccccc
Confidence            4568899999999999999999875     3569999999999999999998776 10   0257999999998765   


Q ss_pred             -CCCCccceEEeccccccCCCcc-ccc---ceEEEEec
Q 023019          244 -FASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVTL  276 (288)
Q Consensus       244 -~~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t~  276 (288)
                       ...++||+|++..+++++.+.. +.|   |.+++...
T Consensus       157 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence             5568899999999999875332 223   77777765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.31  E-value=9e-12  Score=113.63  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~  254 (288)
                      ...+|||||||+|.++..+++..+..+++++|+ +.|++.|++++...+  ...++.++.+|+.+.  |++ ++||+|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCC-CCcCEEEE
Confidence            467999999999999999999988889999999 999999999987651  135799999999875  565 78999999


Q ss_pred             ccccccCCCcc--ccc----------ceEEEEecC
Q 023019          255 GAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       255 ~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      ..++||+++++  .++          |++++..+.
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            99999998874  333          889887754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.30  E-value=7.4e-12  Score=108.78  Aligned_cols=89  Identities=15%  Similarity=0.281  Sum_probs=73.9

Q ss_pred             HHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          167 ELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       167 ~~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      ..+..++... ++.+|||+|||+|.++..+++.++ .+|+|+|+++.+++.|++++...+  ...++.++++|+.+++  
T Consensus        38 ~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           38 VLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhh
Confidence            3455566666 789999999999999999999876 499999999999999999988761  2357999999998875  


Q ss_pred             CCCCccceEEecccc
Q 023019          244 FASSSIDAVHAGAAI  258 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl  258 (288)
                      +++++||+|+++-.+
T Consensus       115 ~~~~~fD~Ii~npPy  129 (259)
T 3lpm_A          115 IPKERADIVTCNPPY  129 (259)
T ss_dssp             SCTTCEEEEEECCCC
T ss_pred             hccCCccEEEECCCC
Confidence            557899999997544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.30  E-value=8.7e-13  Score=107.62  Aligned_cols=113  Identities=13%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCC
Q 023019          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF  244 (288)
Q Consensus       167 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~  244 (288)
                      +.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++++..+  ...++.++.+|+.+ ++.
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhHHh
Confidence            44555554 4567899999999999999999884 3599999999999999999987761  12469999999876 444


Q ss_pred             CCCccceEEecccccc--C----CCcc--ccc---ceEEEEecCcccHH
Q 023019          245 ASSSIDAVHAGAAIHC--W----SSPS--TGV---GVFFQVTLIIHVVE  282 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h--~----~d~~--~~l---G~lvi~t~~~~~l~  282 (288)
                      .+++||+|++...+++  .    ....  +.|   |.+++.+.....+.
T Consensus        97 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~  145 (177)
T 2esr_A           97 LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLP  145 (177)
T ss_dssp             BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCC
T ss_pred             hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccccc
Confidence            4567999999765421  1    1111  445   88888887665543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.30  E-value=2.5e-11  Score=106.39  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=70.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+. .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... +  ..++.++++|+.+. ++
T Consensus        99 ~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~-~--~~~v~~~~~d~~~~-~~  173 (276)
T 2b3t_A           99 VEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-A--IKNIHILQSDWFSA-LA  173 (276)
T ss_dssp             HHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-T--CCSEEEECCSTTGG-GT
T ss_pred             HHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCceEEEEcchhhh-cc
Confidence            345555554 4578999999999999999998866679999999999999999998876 2  34799999999763 44


Q ss_pred             CCccceEEec
Q 023019          246 SSSIDAVHAG  255 (288)
Q Consensus       246 ~~sfD~V~~~  255 (288)
                      +++||+|+++
T Consensus       174 ~~~fD~Iv~n  183 (276)
T 2b3t_A          174 GQQFAMIVSN  183 (276)
T ss_dssp             TCCEEEEEEC
T ss_pred             cCCccEEEEC
Confidence            6789999998

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.30  E-value=1.5e-11  Score=103.74  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~s  248 (288)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.+.++.+..     .++.++.+|+...    ++. ++
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~  126 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EK  126 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CC
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cc
Confidence            3455788999999999999999998864569999999999887777665543     4788899998873    454 78


Q ss_pred             cceEEec
Q 023019          249 IDAVHAG  255 (288)
Q Consensus       249 fD~V~~~  255 (288)
                      ||+|++.
T Consensus       127 fD~V~~~  133 (210)
T 1nt2_A          127 VDLIYQD  133 (210)
T ss_dssp             EEEEEEC
T ss_pred             eeEEEEe
Confidence            9999997

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.29  E-value=1.2e-11  Score=105.77  Aligned_cols=97  Identities=13%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC---CCCCCC
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  247 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~  247 (288)
                      .+..++|.+|||+|||+|.++..+++. |+.++|+|+|+++.|++.++++++..     .++..+.+|...   .++..+
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~  146 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVE  146 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCC
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccc
Confidence            456788999999999999999999987 78889999999999999999987654     588999998865   356678


Q ss_pred             ccceEEeccccccCCCccccc----------ceEEEEe
Q 023019          248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                      ++|+|++.  +.|..++..++          |.++++.
T Consensus       147 ~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          147 GVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             CEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            99999864  34444444444          8888764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.29  E-value=2e-11  Score=110.92  Aligned_cols=106  Identities=13%  Similarity=0.196  Sum_probs=86.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++... + ...++.++.+|+.+ +++.
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~-~~~~  248 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-G-LSDRVDVVEGDFFE-PLPR  248 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-T-CTTTEEEEECCTTS-CCSS
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc-C-CCCceEEEeCCCCC-CCCC
Confidence            3445555556688999999999999999999988789999999 99999999998775 1 23479999999875 3333


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                       .||+|++.+++||++++.  .++          |.+++..+.
T Consensus       249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence             499999999999998874  344          888888766

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.29  E-value=1e-11  Score=105.86  Aligned_cols=115  Identities=10%  Similarity=0.098  Sum_probs=85.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++.+..+|+.+...++
T Consensus        13 ~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~~   88 (230)
T 3lec_A           13 QKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEEA   88 (230)
T ss_dssp             HHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGG
T ss_pred             HHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccccc
Confidence            445556654  789999999999999999999876789999999999999999998872  3457999999998766554


Q ss_pred             CccceEEeccc----ccc-CCCccccc---ceEEEEecCcccHHHHHhh
Q 023019          247 SSIDAVHAGAA----IHC-WSSPSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       247 ~sfD~V~~~~v----l~h-~~d~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      ..||+|+..+.    +.. +++....+   |.|+++...  ...+++++
T Consensus        89 ~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~  135 (230)
T 3lec_A           89 DNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKW  135 (230)
T ss_dssp             GCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHH
T ss_pred             cccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHH
Confidence            57999886543    222 22333334   788877753  35555543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=2.6e-11  Score=106.29  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++..+   ..++.++.+|+.+++. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence            345889999999999999999998655799999999999999999998762   3578899999988744 678999999


Q ss_pred             ccccccCCCccccc----------ceEEEEecCc
Q 023019          255 GAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       255 ~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ....    +....+          |.++++++..
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            7654    333333          8888888765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.29  E-value=5.3e-12  Score=103.47  Aligned_cols=112  Identities=17%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--
Q 023019          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--  242 (288)
Q Consensus       166 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--  242 (288)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+  ...++.++++|+.+.  
T Consensus        32 ~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~  108 (187)
T 2fhp_A           32 KESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRALE  108 (187)
T ss_dssp             HHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECcHHHHHH
Confidence            344555553 24678999999999999998888653 599999999999999999988761  124799999998763  


Q ss_pred             --CCCCCccceEEeccccccCCCc---------cccc---ceEEEEecCcccH
Q 023019          243 --PFASSSIDAVHAGAAIHCWSSP---------STGV---GVFFQVTLIIHVV  281 (288)
Q Consensus       243 --p~~~~sfD~V~~~~vl~h~~d~---------~~~l---G~lvi~t~~~~~l  281 (288)
                        ++.+++||+|++...++. .+.         .+.|   |.+++.+.....+
T Consensus       109 ~~~~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~  160 (187)
T 2fhp_A          109 QFYEEKLQFDLVLLDPPYAK-QEIVSQLEKMLERQLLTNEAVIVCETDKTVKL  160 (187)
T ss_dssp             HHHHTTCCEEEEEECCCGGG-CCHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred             HHHhcCCCCCEEEECCCCCc-hhHHHHHHHHHHhcccCCCCEEEEEeCCcccc
Confidence              223678999999877442 222         2223   8888887766554

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.29  E-value=1.1e-11  Score=112.25  Aligned_cols=107  Identities=11%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             HHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          168 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       168 ~l~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      .+...+...+ +.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...++.++.+|+.+.+ +.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccC
Confidence            3444444444 78999999999999999999988889999999 889999999887651  2357999999998875 23


Q ss_pred             CCccceEEeccccccCCCc--cccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~  277 (288)
                      .+.||+|++.+++||++++  ...+          |++++..+.
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            4669999999999999876  4444          888887753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.29  E-value=2.1e-11  Score=107.16  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=80.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+...+.  ++.+|||+|||+|.++..+++.+.. +|+|+|+|+.|++.|+++++.. + ...++.++++|+.+++. +
T Consensus       117 ~~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n-~-~~~~v~~~~~D~~~~~~-~  190 (278)
T 2frn_A          117 VRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN-K-VEDRMSAYNMDNRDFPG-E  190 (278)
T ss_dssp             HHHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT-T-CTTTEEEECSCTTTCCC-C
T ss_pred             HHHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc-C-CCceEEEEECCHHHhcc-c
Confidence            44555544  4889999999999999999999873 7999999999999999998876 2 23459999999998876 7


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      ++||+|++....    +...++          |.+++.+..+
T Consensus       191 ~~fD~Vi~~~p~----~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          191 NIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             SCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCccEEEECCch----hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            899999985432    222233          8888888764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.29  E-value=6.4e-12  Score=113.78  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...    ...+.++.+|+...+  
T Consensus       185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~d~~~~~--  258 (343)
T 2pjd_A          185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----GVEGEVFASNVFSEV--  258 (343)
T ss_dssp             HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTC--
T ss_pred             HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCEEEEccccccc--
Confidence            45667777555678999999999999999999987679999999999999999998876    344677889987654  


Q ss_pred             CCccceEEeccccccC-----CCccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCW-----SSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~-----~d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|+++.++|+.     .+...++          |.+++.+...
T Consensus       259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            6799999999988752     2233333          8888877554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.29  E-value=2.2e-11  Score=106.03  Aligned_cols=88  Identities=14%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh---cCCCCCCCEEEEEecCCCC-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL-  242 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~---~~g~~~~~i~~~~~d~~~l-  242 (288)
                      ..+..++...++.+|||+|||+|.++..++++.+..+|+|+|+++.+++.|++++..   . + ...++.++++|+.++ 
T Consensus        26 ~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~-l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           26 MLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA-A-FSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT-T-TGGGEEEEECCTTCCH
T ss_pred             HHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC-C-CcceEEEEeCCHHHHh
Confidence            345566666678899999999999999999998767999999999999999999876   4 1 123699999999987 


Q ss_pred             ------CCCCCccceEEecc
Q 023019          243 ------PFASSSIDAVHAGA  256 (288)
Q Consensus       243 ------p~~~~sfD~V~~~~  256 (288)
                            ++++++||+|+++-
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nP  123 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNP  123 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECC
T ss_pred             hhhhhhccCCCCcCEEEECC
Confidence                  35678999999973

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.28  E-value=1.6e-11  Score=108.40  Aligned_cols=94  Identities=11%  Similarity=0.082  Sum_probs=77.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++++...+  ...++.++++|+.+++++
T Consensus        17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecccch
Confidence            46677777777789999999999999999999976  99999999999999999876541  125799999999988765


Q ss_pred             CCccceEEec-----------cccccCCCcc
Q 023019          246 SSSIDAVHAG-----------AAIHCWSSPS  265 (288)
Q Consensus       246 ~~sfD~V~~~-----------~vl~h~~d~~  265 (288)
                        +||+|+++           .+++|.+++.
T Consensus        93 --~fD~vv~nlpy~~~~~~~~~~l~~~~~~~  121 (285)
T 1zq9_A           93 --FFDTCVANLPYQISSPFVFKLLLHRPFFR  121 (285)
T ss_dssp             --CCSEEEEECCGGGHHHHHHHHHHCSSCCS
T ss_pred             --hhcEEEEecCcccchHHHHHHHhcCcchh
Confidence              79999996           4667766654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.28  E-value=1.6e-11  Score=108.85  Aligned_cols=88  Identities=10%  Similarity=0.145  Sum_probs=76.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..     ..++.++++|+..++
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~~  109 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKVD  109 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTSC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhCC
Confidence            3356777778777889999999999999999999865  999999999999999999874     368999999999999


Q ss_pred             CCCCccceEEecccc
Q 023019          244 FASSSIDAVHAGAAI  258 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl  258 (288)
                      +++.+||+|+++...
T Consensus       110 ~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          110 LNKLDFNKVVANLPY  124 (295)
T ss_dssp             GGGSCCSEEEEECCG
T ss_pred             cccCCccEEEEeCcc
Confidence            888889999987543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.28  E-value=3.3e-12  Score=110.91  Aligned_cols=105  Identities=12%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+++.+++.|++++... +   ..+.+..+|+... +++++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~-~---~~v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN-G---VRPRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT-T---CCCEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-C---CcEEEEECChhhc-CcCCCCCEEEEC
Confidence            4578999999999999999999887  9999999999999999998876 2   2288899888762 446789999998


Q ss_pred             cccccCCCc----cccc---ceEEEEecCcccHHHHHhh
Q 023019          256 AAIHCWSSP----STGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       256 ~vl~h~~d~----~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      ...+++...    .+.+   |.++++.+......++.+.
T Consensus       192 ~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~  230 (254)
T 2nxc_A          192 LYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREA  230 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHH
Confidence            766654222    2222   9999988887777776653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.28  E-value=2.6e-11  Score=100.86  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++        .++.++++|+.+++   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEEE
Confidence            44678999999999999999998843 47999999999999999873        27889999999875   68999999


Q ss_pred             ccccccCCC
Q 023019          255 GAAIHCWSS  263 (288)
Q Consensus       255 ~~vl~h~~d  263 (288)
                      +..++|+.+
T Consensus       117 ~~p~~~~~~  125 (200)
T 1ne2_A          117 NPPFGSVVK  125 (200)
T ss_dssp             CCCC-----
T ss_pred             CCCchhccC
Confidence            999999865

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.27  E-value=2.3e-12  Score=103.97  Aligned_cols=99  Identities=14%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C--CCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F--ASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~--~~~sfD~V  252 (288)
                      ++.+|||+|||+|.++..+++.++  .|+|+|+|+.|++.|++++... +   .++.++++|+.+. + +  ..++||+|
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-~---~~~~~~~~d~~~~~~~~~~~~~~~D~i  114 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT-G---LGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH-T---CCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHc-C---CceEEEeccHHHHHHhhhccCCceEEE
Confidence            478999999999999999999987  6999999999999999998877 2   2889999998763 2 1  13489999


Q ss_pred             Eeccccc-cCCC----cc--ccc---ceEEEEecCcccH
Q 023019          253 HAGAAIH-CWSS----PS--TGV---GVFFQVTLIIHVV  281 (288)
Q Consensus       253 ~~~~vl~-h~~d----~~--~~l---G~lvi~t~~~~~l  281 (288)
                      ++...++ +.++    ..  +.|   |.+++.+.....+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             EECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence            9987664 1111    11  334   8888888766544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.27  E-value=4.2e-12  Score=107.64  Aligned_cols=114  Identities=8%  Similarity=0.103  Sum_probs=83.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~  245 (288)
                      .+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.|++.|+++++..+  ...++.++++|+.+ ++..
T Consensus        49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           49 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGT
T ss_pred             HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHHHHH
Confidence            33333333457899999999999999999863 35699999999999999999988762  13469999999854 3322


Q ss_pred             -----CCccceEEeccccccCCCcc------ccc---ceEEEEecCcccHHH
Q 023019          246 -----SSSIDAVHAGAAIHCWSSPS------TGV---GVFFQVTLIIHVVED  283 (288)
Q Consensus       246 -----~~sfD~V~~~~vl~h~~d~~------~~l---G~lvi~t~~~~~l~e  283 (288)
                           .++||+|++....++..+..      +.|   |.+++.........+
T Consensus       127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~  178 (221)
T 3u81_A          127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPD  178 (221)
T ss_dssp             TTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEEEESCCCCCCCHH
T ss_pred             HHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEEEEeCCCCcchHH
Confidence                 27899999988777765432      344   888777665444333

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.26  E-value=1.8e-11  Score=112.18  Aligned_cols=90  Identities=13%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+...+...++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|+++++..+  ...++.++++|+++++++ 
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-  127 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP-  127 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS-
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC-
Confidence            3444445556789999999999999999999864 599999999 99999999988762  235699999999998876 


Q ss_pred             CccceEEeccccccC
Q 023019          247 SSIDAVHAGAAIHCW  261 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~  261 (288)
                      ++||+|++..+.+++
T Consensus       128 ~~~D~Iv~~~~~~~l  142 (376)
T 3r0q_C          128 EKVDVIISEWMGYFL  142 (376)
T ss_dssp             SCEEEEEECCCBTTB
T ss_pred             CcceEEEEcChhhcc
Confidence            899999996655544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.26  E-value=1.3e-11  Score=110.91  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+...+ .+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...++.++.+|+.+ +++ 
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CCC-
Confidence            44455554444 8999999999999999999987779999999 999999999876541  13579999999987 554 


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      ++||+|++.+++||++++.  .++          |++++..+.
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            6799999999999998776  444          889888764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.26  E-value=1.7e-11  Score=105.34  Aligned_cols=114  Identities=12%  Similarity=0.113  Sum_probs=83.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++.+..+|+.+...++
T Consensus        13 ~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~~   88 (244)
T 3gnl_A           13 EKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEKK   88 (244)
T ss_dssp             HHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGG
T ss_pred             HHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCcc
Confidence            455666654  789999999999999999999876789999999999999999998872  2456999999998765444


Q ss_pred             CccceEEeccc----ccc-CCCccccc---ceEEEEecCcccHHHHHh
Q 023019          247 SSIDAVHAGAA----IHC-WSSPSTGV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       247 ~sfD~V~~~~v----l~h-~~d~~~~l---G~lvi~t~~~~~l~el~~  286 (288)
                      ..||+|+..+.    +.. +++....+   |.|+++...  ....+++
T Consensus        89 ~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~  134 (244)
T 3gnl_A           89 DAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNI--AAWQLRE  134 (244)
T ss_dssp             GCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHH
T ss_pred             ccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHH
Confidence            46999886543    322 23333333   777777643  3444444

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.26  E-value=3.5e-11  Score=109.21  Aligned_cols=93  Identities=14%  Similarity=0.257  Sum_probs=76.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|+++++..+  ...++.++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC-CEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCCC-
Confidence            4455555556788999999999999999998753 5999999997 9999999887751  236899999999998765 


Q ss_pred             CccceEEeccccccCCCc
Q 023019          247 SSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~  264 (288)
                      ++||+|++..+++|+...
T Consensus       115 ~~~D~Ivs~~~~~~~~~~  132 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNE  132 (348)
T ss_dssp             SCEEEEEECCCBTTBTTT
T ss_pred             CceeEEEEeCchhcCChH
Confidence            689999999998888644

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.26  E-value=2.1e-11  Score=103.66  Aligned_cols=109  Identities=17%  Similarity=0.285  Sum_probs=81.3

Q ss_pred             HHHhhc--CCCCCCeEEEEcCccchHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHhcCC--CCCCCEEEEEe
Q 023019          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRA  237 (288)
Q Consensus       168 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~~------~~~v~gvD~s~~~l~~A~~~~~~~~g--~~~~~i~~~~~  237 (288)
                      .+.+.+  ...++.+|||||||+|.++..+++...      ..+|+++|+++.+++.|++++...+.  ....++.++.+
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            344444  345688999999999999999988532      24899999999999999998876400  00247999999


Q ss_pred             cCCCCCCCC-CccceEEeccccccCCCcc-ccc---ceEEEEecC
Q 023019          238 DISRLPFAS-SSIDAVHAGAAIHCWSSPS-TGV---GVFFQVTLI  277 (288)
Q Consensus       238 d~~~lp~~~-~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t~~  277 (288)
                      |+.. ++++ ++||+|++..+++|+++.. +.|   |.+++....
T Consensus       153 d~~~-~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          153 DGRK-GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGGG-CCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred             Cccc-CCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEec
Confidence            9986 4444 7899999999999886332 223   888887764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.25  E-value=1.6e-11  Score=99.04  Aligned_cols=98  Identities=15%  Similarity=0.149  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CC
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA  245 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~  245 (288)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ |++             ..++.++.+|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456889999999999999999988 5557999999999 753             246889999999877        77


Q ss_pred             CCccceEEeccccccCCCc-----------cccc----------ceEEEEecCcccHHHHHh
Q 023019          246 SSSIDAVHAGAAIHCWSSP-----------STGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~-----------~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      +++||+|++..++++..++           ..++          |.+++.++......++.+
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  147 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR  147 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHH
Confidence            7899999999998887665           3444          999998888777666543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.25  E-value=9.5e-12  Score=106.35  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-  243 (288)
                      .+.+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+. + 
T Consensus        60 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  137 (232)
T 3ntv_A           60 LDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFEN  137 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHHH
T ss_pred             HHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHh
Confidence            344444444445789999999999999999997666799999999999999999998762  235899999999764 4 


Q ss_pred             CCCCccceEEecccccc
Q 023019          244 FASSSIDAVHAGAAIHC  260 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h  260 (288)
                      ..+++||+|++.....+
T Consensus       138 ~~~~~fD~V~~~~~~~~  154 (232)
T 3ntv_A          138 VNDKVYDMIFIDAAKAQ  154 (232)
T ss_dssp             HTTSCEEEEEEETTSSS
T ss_pred             hccCCccEEEEcCcHHH
Confidence            33689999998765443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.25  E-value=9.7e-12  Score=109.13  Aligned_cols=88  Identities=11%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCccch----HHHHHHHh-CC---CCEEEEEeCCHHHHHHHHHHHHhc---CCC----------------C-
Q 023019          177 LGGNIIDASCGSGL----FSRIFAKS-GL---FSLVVALDYSENMLKQCYEFVQQE---SNF----------------P-  228 (288)
Q Consensus       177 ~~~~VLDiGcG~G~----~~~~l~~~-~~---~~~v~gvD~s~~~l~~A~~~~~~~---~g~----------------~-  228 (288)
                      ++.+|||+|||+|.    ++..+++. +.   ..+|+|+|+|+.|++.|++.+...   .+.                . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35789999999998    55666665 21   249999999999999999864100   000                0 


Q ss_pred             --------CCCEEEEEecCCCCCCC-CCccceEEeccccccCCCc
Q 023019          229 --------KENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       229 --------~~~i~~~~~d~~~lp~~-~~sfD~V~~~~vl~h~~d~  264 (288)
                              ..++.|.++|+.+.|++ .+.||+|+|.++++|++++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~  229 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  229 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence                    03689999999987665 5789999999999999766

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.25  E-value=2.7e-11  Score=109.05  Aligned_cols=89  Identities=20%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|+++++.. + ...++.++.+|+.++++++++||+|++.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~-~~v~~vD~s-~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELN-G-FSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESS-THHHHHHHHHHHT-T-CTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCC-CEEEEEChH-HHHHHHHHHHHHc-C-CCCCEEEEECchhhccCCCCcccEEEEe
Confidence            4578999999999999999998853 599999999 5999999998775 1 2457999999999998888899999997


Q ss_pred             cc---cccCCCccccc
Q 023019          256 AA---IHCWSSPSTGV  268 (288)
Q Consensus       256 ~v---l~h~~d~~~~l  268 (288)
                      .+   +.+..++..++
T Consensus       113 ~~~~~l~~~~~~~~~l  128 (328)
T 1g6q_1          113 WMGYFLLYESMMDTVL  128 (328)
T ss_dssp             CCBTTBSTTCCHHHHH
T ss_pred             CchhhcccHHHHHHHH
Confidence            54   33444444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.24  E-value=8.5e-11  Score=98.12  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ...++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...    ..++.++++|+.+++   ++||+|+
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~---~~~D~v~  117 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVFIGDVSEFN---SRVDIVI  117 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHc----CCCEEEEECchHHcC---CCCCEEE
Confidence            345688999999999999999998864 48999999999999999998776    228999999999875   4899999


Q ss_pred             eccccccCC
Q 023019          254 AGAAIHCWS  262 (288)
Q Consensus       254 ~~~vl~h~~  262 (288)
                      ++..+++..
T Consensus       118 ~~~p~~~~~  126 (207)
T 1wy7_A          118 MNPPFGSQR  126 (207)
T ss_dssp             ECCCCSSSS
T ss_pred             EcCCCcccc
Confidence            988877664

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.24  E-value=4.6e-11  Score=109.44  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ....+.... ..++.+|||+|||+|.++..++..+...+|+|+|+|+.|++.|++++...+  ...++.+.++|+.++++
T Consensus       206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~~~  282 (373)
T 3tm4_A          206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQLSQ  282 (373)
T ss_dssp             HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGGGG
T ss_pred             HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhCCc
Confidence            344455555 566889999999999999999998865689999999999999999998762  12579999999999998


Q ss_pred             CCCccceEEeccccccCCC-------c-cccc--------ceEEEEecCcccHHHH
Q 023019          245 ASSSIDAVHAGAAIHCWSS-------P-STGV--------GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d-------~-~~~l--------G~lvi~t~~~~~l~el  284 (288)
                      ++++||+|+++-.+..-..       . ..++        |.+++.+.....+.++
T Consensus       283 ~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~~~~~~~~  338 (373)
T 3tm4_A          283 YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEA  338 (373)
T ss_dssp             TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEESCHHHHHHH
T ss_pred             ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            8899999999755332111       1 1111        7777777766666544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.23  E-value=2.1e-11  Score=106.43  Aligned_cols=109  Identities=17%  Similarity=0.054  Sum_probs=79.7

Q ss_pred             HHHhhcCC-CCCCeEEEEcCcc---chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          168 LMKGYLKP-VLGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       168 ~l~~~l~~-~~~~~VLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .+..++.. ....+|||||||+   |.....+.+..+..+|+++|.|+.|++.|++++...   ...++.++++|+.+++
T Consensus        68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPA  144 (277)
T ss_dssp             HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHH
T ss_pred             HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChh
Confidence            34445542 2346899999996   444455555567789999999999999999987653   1357999999998852


Q ss_pred             ------CCCCccc-----eEEeccccccCCCcc---ccc----------ceEEEEecCcc
Q 023019          244 ------FASSSID-----AVHAGAAIHCWSSPS---TGV----------GVFFQVTLIIH  279 (288)
Q Consensus       244 ------~~~~sfD-----~V~~~~vl~h~~d~~---~~l----------G~lvi~t~~~~  279 (288)
                            ...+.||     +|+++.+|||+++.+   .++          |.|+++.+..+
T Consensus       145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                  1134566     688999999999964   344          88999887654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.23  E-value=4.6e-11  Score=108.54  Aligned_cols=119  Identities=19%  Similarity=0.087  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      +.....+.......++.+|||+|||+|.++..++..+ +..+++|+|+++.|++.|+++++.. |  ..++.+.++|+.+
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~-g--~~~i~~~~~D~~~  265 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS-G--LSWIRFLRADARH  265 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-T--CTTCEEEECCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-C--CCceEEEeCChhh
Confidence            3445566666676778899999999999999999976 5569999999999999999999887 2  2389999999999


Q ss_pred             CCCCCCccceEEeccccccCCC---------------ccccc---ceEEEEecCcccHHHH
Q 023019          242 LPFASSSIDAVHAGAAIHCWSS---------------PSTGV---GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d---------------~~~~l---G~lvi~t~~~~~l~el  284 (288)
                      ++.+.+.||+|+++-.......               ..+.+   |.+++.+.....+.++
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~  326 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRA  326 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHH
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence            9877788999999644332111               11111   9999998876555443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.22  E-value=3.4e-11  Score=111.90  Aligned_cols=109  Identities=8%  Similarity=-0.058  Sum_probs=80.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHH-------HHHHHhcCCCCCCCEEEEE
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLVR  236 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A-------~~~~~~~~g~~~~~i~~~~  236 (288)
                      .....+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|       ++++... |....++.+++
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~-Gl~~~nV~~i~  307 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY-GMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT-TBCCCCEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc-CCCCCceEEEE
Confidence            345666677777789999999999999999999875445899999999999988       8877765 22136899999


Q ss_pred             ecCCCC--CC--CCCccceEEeccccccCCCccccc----------ceEEEE
Q 023019          237 ADISRL--PF--ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQV  274 (288)
Q Consensus       237 ~d~~~l--p~--~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~  274 (288)
                      +|....  ++  ..++||+|+++.++ +.+++...+          |.+++.
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence            865532  22  24789999998776 345554433          777766

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.21  E-value=1.7e-11  Score=104.28  Aligned_cols=92  Identities=9%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F  244 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~  244 (288)
                      .+.......++.+|||||||+|..+..+++.. +.++|+++|+++.+++.|+++++.. |....++.++.+|+.+. + +
T Consensus        47 ~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~~i~~~~gda~~~l~~~  125 (221)
T 3dr5_A           47 TLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA-GYSPSRVRFLLSRPLDVMSRL  125 (221)
T ss_dssp             HHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT-TCCGGGEEEECSCHHHHGGGS
T ss_pred             HHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCcCcEEEEEcCHHHHHHHh
Confidence            33333344345599999999999999999874 3579999999999999999999886 22115799999998764 2 3


Q ss_pred             CCCccceEEecccccc
Q 023019          245 ASSSIDAVHAGAAIHC  260 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h  260 (288)
                      .+++||+|++.....+
T Consensus       126 ~~~~fD~V~~d~~~~~  141 (221)
T 3dr5_A          126 ANDSYQLVFGQVSPMD  141 (221)
T ss_dssp             CTTCEEEEEECCCTTT
T ss_pred             cCCCcCeEEEcCcHHH
Confidence            3689999998765443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.21  E-value=2.6e-11  Score=110.81  Aligned_cols=97  Identities=18%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             HHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+.+.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.|++.|++         ..++.++.+|+.+ +++.
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC
Confidence            3444443 44578999999999999999999988789999999 999987764         2569999999987 6654


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                        ||+|++.+++||++++.  .++          |++++..+.
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence              99999999999999887  555          888888653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.21  E-value=5.1e-11  Score=101.61  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC---CCCCCC
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  247 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~  247 (288)
                      .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.+.++++..     .++.++.+|+.+   +++.++
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence            344567889999999999999999987 35569999999999888888776653     579999999987   455678


Q ss_pred             ccceEEeccc
Q 023019          248 SIDAVHAGAA  257 (288)
Q Consensus       248 sfD~V~~~~v  257 (288)
                      +||+|++...
T Consensus       147 ~~D~V~~~~~  156 (233)
T 2ipx_A          147 MVDVIFADVA  156 (233)
T ss_dssp             CEEEEEECCC
T ss_pred             cEEEEEEcCC
Confidence            9999999544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.20  E-value=5.3e-11  Score=101.28  Aligned_cols=113  Identities=12%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC-CCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~-~lp~~  245 (288)
                      +.+..++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++.+..+|+. .++. 
T Consensus         7 ~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-   81 (225)
T 3kr9_A            7 ELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-   81 (225)
T ss_dssp             HHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-
Confidence            445555554  789999999999999999999877789999999999999999998872  2357999999985 4442 


Q ss_pred             CCccceEEeccc----ccc-CCCccccc---ceEEEEecCcccHHHHHh
Q 023019          246 SSSIDAVHAGAA----IHC-WSSPSTGV---GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       246 ~~sfD~V~~~~v----l~h-~~d~~~~l---G~lvi~t~~~~~l~el~~  286 (288)
                      ...||+|+..+.    +.. +++....+   |.|++...  .....+++
T Consensus        82 ~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~  128 (225)
T 3kr9_A           82 TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRI  128 (225)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHH
T ss_pred             CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHH
Confidence            226998886543    222 23333333   77777655  34455544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.20  E-value=7.1e-11  Score=100.78  Aligned_cols=93  Identities=13%  Similarity=0.071  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+.   +..+|+|+|+++.|++.+++++...    ..+..+.++|....+++ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence            457799999999999999887   4469999999999999999998776    47888999999987765 489999999


Q ss_pred             cccccCCCccccc----------ceEEEEec
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      -++||+++..+..          +.++++-+
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            9999986654433          77777766

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.19  E-value=2.8e-11  Score=103.21  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~  244 (288)
                      ...+...+...++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+  ...++.++.+|+.+. +.
T Consensus        43 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           43 MESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHHH
T ss_pred             HHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHh
Confidence            344444444456789999999999999999998766799999999999999999988762  234699999998864 43


Q ss_pred             C--CCccceEEeccccccCC----Cccccc---ceEEEEec
Q 023019          245 A--SSSIDAVHAGAAIHCWS----SPSTGV---GVFFQVTL  276 (288)
Q Consensus       245 ~--~~sfD~V~~~~vl~h~~----d~~~~l---G~lvi~t~  276 (288)
                      .  +++||+|++....+...    ...+.|   |.+++.+.
T Consensus       121 ~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             HTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             cccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            3  57899999987764221    122223   88887654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.18  E-value=2.8e-10  Score=97.39  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI  249 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sf  249 (288)
                      ...++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++...+..+..     .++.++++|+....   ...++|
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccccchhhhccccce
Confidence            4678999999999999999999886 55679999999999986665544432     58999999998643   124689


Q ss_pred             ceEEeccccccCCCccc--------cc---ceEEEEe
Q 023019          250 DAVHAGAAIHCWSSPST--------GV---GVFFQVT  275 (288)
Q Consensus       250 D~V~~~~vl~h~~d~~~--------~l---G~lvi~t  275 (288)
                      |+|++....   ++...        +|   |.|+++.
T Consensus       148 D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          148 DVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            999998654   33322        23   8888874

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.17  E-value=9e-11  Score=97.44  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=74.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---------
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  243 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---------  243 (288)
                      ..++.+|||+|||+|.++..+++..+  ..+|+|+|+|+.+          .    ..++.++++|+.+.+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~----~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P----IPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C----CTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C----CCCceEEEccccchhhhhhccccc
Confidence            34578999999999999999998865  5799999999921          1    357889999998876         


Q ss_pred             ----------------CCCCccceEEeccccccCC----Cccc-------cc----------ceEEEEecCcccHHHHHh
Q 023019          244 ----------------FASSSIDAVHAGAAIHCWS----SPST-------GV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       244 ----------------~~~~sfD~V~~~~vl~h~~----d~~~-------~l----------G~lvi~t~~~~~l~el~~  286 (288)
                                      +++++||+|++..++++..    +...       ++          |.|++.++......++.+
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~  165 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKT  165 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHH
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHH
Confidence                            5678999999988776642    2211       12          999988887776666543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.17  E-value=1.5e-10  Score=99.91  Aligned_cols=82  Identities=12%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCC---CCccc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFA---SSSID  250 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~---~~sfD  250 (288)
                      ++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++... + ...++.++++|+.+.   +++   +++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-N-LSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-T-CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc-C-CCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            467999999999999998888754469999999999999999998876 2 234599999998762   444   26899


Q ss_pred             eEEecccccc
Q 023019          251 AVHAGAAIHC  260 (288)
Q Consensus       251 ~V~~~~vl~h  260 (288)
                      +|+++-.+++
T Consensus       143 ~i~~npp~~~  152 (254)
T 2h00_A          143 FCMCNPPFFA  152 (254)
T ss_dssp             EEEECCCCC-
T ss_pred             EEEECCCCcc
Confidence            9999855443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.17  E-value=1.3e-10  Score=109.64  Aligned_cols=93  Identities=15%  Similarity=0.263  Sum_probs=75.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.|+++++.. | ...++.++.+|+.+++++ 
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~-g-l~~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN-N-LTDRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHT-T-CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHc-C-CCCcEEEEECchhhCccC-
Confidence            344555554568899999999999999998864 36999999999 999999998876 1 236899999999988765 


Q ss_pred             CccceEEeccccccCCCc
Q 023019          247 SSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~  264 (288)
                      ++||+|++..+++|+.+.
T Consensus       223 ~~fD~Ivs~~~~~~~~~e  240 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNE  240 (480)
T ss_dssp             SCEEEEECCCCHHHHTCH
T ss_pred             CCeEEEEEeCchHhcCcH
Confidence            589999998888877543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.17  E-value=8.2e-11  Score=101.49  Aligned_cols=83  Identities=17%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++++..     ..++.++++|+.+++
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~   89 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFK   89 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCC
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCC
Confidence            3346677777777789999999999999999999985  999999999999999998653     258999999999988


Q ss_pred             CCC-CccceEEe
Q 023019          244 FAS-SSIDAVHA  254 (288)
Q Consensus       244 ~~~-~sfD~V~~  254 (288)
                      +++ ..|+ |++
T Consensus        90 ~~~~~~~~-vv~  100 (244)
T 1qam_A           90 FPKNQSYK-IFG  100 (244)
T ss_dssp             CCSSCCCE-EEE
T ss_pred             cccCCCeE-EEE
Confidence            764 4554 444

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.17  E-value=8e-11  Score=107.58  Aligned_cols=74  Identities=20%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      ++++|||||||+|.++..+++.|. .+|+|+|.|+ |++.|++.++.+  ....++.++.+|++++.++ ++||+|++-
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n--~~~~~i~~i~~~~~~~~lp-e~~DvivsE  156 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFN--GLEDRVHVLPGPVETVELP-EQVDAIVSE  156 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHc--CCCceEEEEeeeeeeecCC-ccccEEEee
Confidence            588999999999999999998886 5899999996 899999988876  2457899999999998876 689999983

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.16  E-value=3.3e-11  Score=102.76  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC-HHHHHHH---HHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQESNFPKENFLLVRADISRLPFA-SSSID  250 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s-~~~l~~A---~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD  250 (288)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.|++.|   ++++... +  ..++.++++|++.+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-~--~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG-G--LSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT-C--CSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc-C--CCCeEEEEcCHHHhhhhccCeEE
Confidence            35789999999999999999987777799999999 7787777   6666554 1  45799999999998632 13444


Q ss_pred             eEEec
Q 023019          251 AVHAG  255 (288)
Q Consensus       251 ~V~~~  255 (288)
                      .|+++
T Consensus       100 ~i~~~  104 (225)
T 3p2e_A          100 SISIL  104 (225)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=1e-10  Score=101.60  Aligned_cols=84  Identities=11%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..     ..++.++++|+.+++
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~   88 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFD   88 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCC
Confidence            3356777788877899999999999999999999875  999999999999999998754     258999999999988


Q ss_pred             CCC----CccceEEec
Q 023019          244 FAS----SSIDAVHAG  255 (288)
Q Consensus       244 ~~~----~sfD~V~~~  255 (288)
                      +++    +.|| |+++
T Consensus        89 ~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           89 FSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             GGGSCCSSCEE-EEEE
T ss_pred             HHHhccCCCeE-EEec
Confidence            653    4688 5554

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.15  E-value=3.1e-10  Score=96.22  Aligned_cols=80  Identities=14%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s  248 (288)
                      +...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.++++++..     .++.++.+|+.+..   ...++
T Consensus        69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCC
Confidence            33567889999999999999999987 45569999999999999999887653     68999999998732   12368


Q ss_pred             cceEEeccc
Q 023019          249 IDAVHAGAA  257 (288)
Q Consensus       249 fD~V~~~~v  257 (288)
                      ||+|++...
T Consensus       144 ~D~v~~~~~  152 (227)
T 1g8a_A          144 VDVIFEDVA  152 (227)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999998654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.15  E-value=8.9e-11  Score=107.27  Aligned_cols=97  Identities=13%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             HHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+.+.+. ..+..+|||||||+|.++..+++..+..+++++|+ +.|++.|++         ..++.++.+|+.+ ++++
T Consensus       193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~  261 (368)
T 3reo_A          193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPK  261 (368)
T ss_dssp             HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCC
Confidence            3444444 44578999999999999999999988889999999 888887764         3689999999987 6665


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      +  |+|++.+++||+++++  ++|          |++++..+.
T Consensus       262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            4  9999999999998865  333          889998765

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.15  E-value=1.2e-10  Score=104.29  Aligned_cols=85  Identities=16%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+...+...++.+|||+|||+|..+..+++.. ...+|+|+|+|+.+++.++++++..+   ..++.++++|+..++..+
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~~~~~  185 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGELN  185 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGGC
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhccccc
Confidence            34455677788999999999999999999874 34699999999999999999998872   347999999998876556


Q ss_pred             CccceEEec
Q 023019          247 SSIDAVHAG  255 (288)
Q Consensus       247 ~sfD~V~~~  255 (288)
                      ++||+|++.
T Consensus       186 ~~fD~Il~d  194 (315)
T 1ixk_A          186 VEFDKILLD  194 (315)
T ss_dssp             CCEEEEEEE
T ss_pred             ccCCEEEEe
Confidence            789999984

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.14  E-value=1.4e-10  Score=103.05  Aligned_cols=85  Identities=15%  Similarity=0.221  Sum_probs=68.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++... +  ..++.++.+|+..++++
T Consensus        31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~-~--~~~v~~~~~D~~~~~~~  105 (299)
T 2h1r_A           31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYE-G--YNNLEVYEGDAIKTVFP  105 (299)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHT-T--CCCEEC----CCSSCCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-C--CCceEEEECchhhCCcc
Confidence            45666777777789999999999999999998865  9999999999999999998765 1  36899999999988763


Q ss_pred             CCccceEEeccc
Q 023019          246 SSSIDAVHAGAA  257 (288)
Q Consensus       246 ~~sfD~V~~~~v  257 (288)
                        +||+|+++..
T Consensus       106 --~~D~Vv~n~p  115 (299)
T 2h1r_A          106 --KFDVCTANIP  115 (299)
T ss_dssp             --CCSEEEEECC
T ss_pred             --cCCEEEEcCC
Confidence              8999999543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.14  E-value=2.2e-10  Score=106.95  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----  241 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----  241 (288)
                      ++.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++.. +  ..++.++++|+.+    
T Consensus       275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~f~~~d~~~~l~~  349 (433)
T 1uwv_A          275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLN-G--LQNVTFYHENLEEDVTK  349 (433)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEECCTTSCCSS
T ss_pred             HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEECCHHHHhhh
Confidence            45556666666788999999999999999998854  9999999999999999998876 2  3489999999987    


Q ss_pred             CCCCCCccceEEec
Q 023019          242 LPFASSSIDAVHAG  255 (288)
Q Consensus       242 lp~~~~sfD~V~~~  255 (288)
                      +++.+++||+|++.
T Consensus       350 ~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          350 QPWAKNGFDKVLLD  363 (433)
T ss_dssp             SGGGTTCCSEEEEC
T ss_pred             hhhhcCCCCEEEEC
Confidence            44667789999984

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.14  E-value=6.8e-11  Score=107.10  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+...++.+|||||||+|.++..+++..+..+++++|++ .++.  +++++..  ....++.++.+|+. .+++ 
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~--~~~~~v~~~~~d~~-~~~p-  246 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAP--DVAGRWKVVEGDFL-REVP-  246 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCG--GGTTSEEEEECCTT-TCCC-
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccccc--CCCCCeEEEecCCC-CCCC-
Confidence            34555555566889999999999999999999888899999994 4444  3222221  12467999999996 3444 


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                       +||+|++.+++||+++++  +++          |++++.++.
T Consensus       247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             899999999999999883  555          999988764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=7e-11  Score=102.04  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC--CCcc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA--SSSI  249 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~--~~sf  249 (288)
                      ...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...++.++.+|+.+ ++..  .++|
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            334578999999999999999999854 5799999999999999999998762  23579999999875 3322  3589


Q ss_pred             ceEEeccccccCCC----ccccc---ceEEEEecC
Q 023019          250 DAVHAGAAIHCWSS----PSTGV---GVFFQVTLI  277 (288)
Q Consensus       250 D~V~~~~vl~h~~d----~~~~l---G~lvi~t~~  277 (288)
                      |+|++.......+.    ..+.|   |.+++....
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          138 DLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            99998664333211    12222   777776654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.14  E-value=8.3e-11  Score=101.34  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=85.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +..+...+.  +..+|||||||+|.++..++...+..+|+++|+++.|++.+++++...    ..+..+.+.|...-+ +
T Consensus       123 Y~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~-p  195 (281)
T 3lcv_B          123 YRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDR-L  195 (281)
T ss_dssp             HHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSC-C
T ss_pred             HHHHHhccC--CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccC-C
Confidence            344444553  367999999999999999998878889999999999999999999887    356888999987655 4


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      .+.||+|+++-+++|+++..+..          |.++++-+.
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence            57899999999999997765532          777777655

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.13  E-value=1.1e-10  Score=98.14  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+.     .+++|+|+|+.                  ++.++++|+.++++++++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence            457899999999999988873     38999999985                  3457899999999989999999999


Q ss_pred             cccccCCCccccc----------ceEEEEecCc
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      .++|+ +++..++          |.+++.++..
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            99964 7777666          8888887654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.13  E-value=1.6e-10  Score=101.94  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+  ...++.++++|+.+. ++
T Consensus       112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~~~~-~~  187 (284)
T 1nv8_A          112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP-FK  187 (284)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG-GG
T ss_pred             HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcchhh-cc
Confidence            344444443334679999999999999999998 66799999999999999999988762  123599999999863 22


Q ss_pred             CCcc---ceEEec
Q 023019          246 SSSI---DAVHAG  255 (288)
Q Consensus       246 ~~sf---D~V~~~  255 (288)
                       ++|   |+|+++
T Consensus       188 -~~f~~~D~Ivsn  199 (284)
T 1nv8_A          188 -EKFASIEMILSN  199 (284)
T ss_dssp             -GGTTTCCEEEEC
T ss_pred             -cccCCCCEEEEc
Confidence             579   999997

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.13  E-value=1.5e-10  Score=105.67  Aligned_cols=98  Identities=18%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             HHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .+...+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++         ..++.++.+|+.+ |++.
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~  259 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPS  259 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCC
Confidence            3444444 45578999999999999999999988889999999 888877764         3689999999987 7765


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~~  278 (288)
                      +  |+|++.+++||+++.+  ++|          |++++..+..
T Consensus       260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  301 (364)
T 3p9c_A          260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCIL  301 (364)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            4  9999999999998764  333          9999987653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.13  E-value=1e-10  Score=100.88  Aligned_cols=96  Identities=18%  Similarity=0.078  Sum_probs=69.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCCC------------
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES--NFPKEN------------  231 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~l~~A~~~~~~~~--g~~~~~------------  231 (288)
                      .+...+...++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.|++.|++++....  + ...+            
T Consensus        42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~  120 (250)
T 1o9g_A           42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG-LTARELERREQSERFG  120 (250)
T ss_dssp             HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHC
T ss_pred             HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc-ccccchhhhhhhhhcc
Confidence            3344444345779999999999999999987  444599999999999999998765430  0 0001            


Q ss_pred             -------------EE-------------EEEecCCCCCC-----CCCccceEEeccccccCCCc
Q 023019          232 -------------FL-------------LVRADISRLPF-----ASSSIDAVHAGAAIHCWSSP  264 (288)
Q Consensus       232 -------------i~-------------~~~~d~~~lp~-----~~~sfD~V~~~~vl~h~~d~  264 (288)
                                   +.             +.++|+.+...     ...+||+|+++..+.+..+.
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~  184 (250)
T 1o9g_A          121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHW  184 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSS
T ss_pred             cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccc
Confidence                         55             89999887431     34589999998877766543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.10  E-value=1.1e-10  Score=98.62  Aligned_cols=109  Identities=11%  Similarity=0.031  Sum_probs=77.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-  243 (288)
                      ..+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...++.++.+|+.+. + 
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           48 KFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHH
Confidence            3333333334578999999999999999999855 5699999999999999999988762  234699999998653 1 


Q ss_pred             CC---CCccceEEeccccccCCC----ccccc---ceEEEEecC
Q 023019          244 FA---SSSIDAVHAGAAIHCWSS----PSTGV---GVFFQVTLI  277 (288)
Q Consensus       244 ~~---~~sfD~V~~~~vl~h~~d----~~~~l---G~lvi~t~~  277 (288)
                      +.   .++||+|++.....+.+.    ..+.|   |.+++....
T Consensus       126 ~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          126 IENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             HHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             HHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            11   267999998766443322    12222   777766544

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.10  E-value=1.1e-10  Score=105.83  Aligned_cols=89  Identities=17%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.|++.|++         ..++.++.+|+.+ +++  .||+|++.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEee
Confidence            3468999999999999999999987789999999 999988764         2459999999976 554  39999999


Q ss_pred             cccccCCCcc--ccc-------------ceEEEEecC
Q 023019          256 AAIHCWSSPS--TGV-------------GVFFQVTLI  277 (288)
Q Consensus       256 ~vl~h~~d~~--~~l-------------G~lvi~t~~  277 (288)
                      +++||++++.  .++             |++++..+.
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            9999999876  444             778888764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.10  E-value=1.9e-10  Score=101.17  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHH-----hcCCCC---CCCEEEEEe
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQ-----QESNFP---KENFLLVRA  237 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~-s~~~l~~A~~~~~-----~~~g~~---~~~i~~~~~  237 (288)
                      +.+.......++.+|||||||+|.++..+++.+. .+|+|+|+ |+.|++.|++++.     .. +..   ..++.+...
T Consensus        69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~-~~~~~~~~~v~~~~~  146 (281)
T 3bzb_A           69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNIREHTANSC-SSETVKRASPKVVPY  146 (281)
T ss_dssp             HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEEC
T ss_pred             HHHHhcchhcCCCeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhc-ccccCCCCCeEEEEe
Confidence            4444444434678999999999999999988763 58999999 8999999999983     32 100   036777766


Q ss_pred             cCCCCC--C----CCCccceEEeccccccCCCcccc
Q 023019          238 DISRLP--F----ASSSIDAVHAGAAIHCWSSPSTG  267 (288)
Q Consensus       238 d~~~lp--~----~~~sfD~V~~~~vl~h~~d~~~~  267 (288)
                      |..+..  +    .+++||+|++..+++|.++...+
T Consensus       147 ~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~l  182 (281)
T 3bzb_A          147 RWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDAL  182 (281)
T ss_dssp             CTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHH
T ss_pred             cCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHH
Confidence            655421  1    35789999999999987664433

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.10  E-value=1e-10  Score=98.06  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~  254 (288)
                      ++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+. +..++ ||+|++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~-fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQRD-IDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccCCC-CCEEEE
Confidence            467999999999999999998854 5799999999999999999987651  134699999998753 54456 999998


Q ss_pred             ccc
Q 023019          255 GAA  257 (288)
Q Consensus       255 ~~v  257 (288)
                      ...
T Consensus       133 ~~~  135 (210)
T 3c3p_A          133 DCD  135 (210)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            643

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.09  E-value=1.7e-10  Score=100.97  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      ...+.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..      .++.++++|+..++
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~~~  104 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALLYP  104 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGGSC
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhhCC
Confidence            345677777777778 999999999999999999975  999999999999999998542      47999999999988


Q ss_pred             CCCC-ccceEEecc
Q 023019          244 FASS-SIDAVHAGA  256 (288)
Q Consensus       244 ~~~~-sfD~V~~~~  256 (288)
                      +++. .+|.|+++.
T Consensus       105 ~~~~~~~~~iv~Nl  118 (271)
T 3fut_A          105 WEEVPQGSLLVANL  118 (271)
T ss_dssp             GGGSCTTEEEEEEE
T ss_pred             hhhccCccEEEecC
Confidence            7653 688888865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.09  E-value=9.7e-11  Score=104.08  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=76.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~  244 (288)
                      +.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++++..    ..++.++++|+.+++  +
T Consensus        16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----g~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHH
Confidence            4556677777789999999999999999999865569999999999999999998876    268999999998875  2


Q ss_pred             C---CCccceEEeccc--cccCCCcccc
Q 023019          245 A---SSSIDAVHAGAA--IHCWSSPSTG  267 (288)
Q Consensus       245 ~---~~sfD~V~~~~v--l~h~~d~~~~  267 (288)
                      .   .++||.|++...  -.++.++.+.
T Consensus        92 ~~~g~~~~D~Vl~D~gvSs~qld~~~rg  119 (301)
T 1m6y_A           92 KTLGIEKVDGILMDLGVSTYQLKGENRG  119 (301)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSCSC
T ss_pred             HhcCCCCCCEEEEcCccchhhhcccccc
Confidence            2   157999998543  2344444443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.08  E-value=2.2e-10  Score=100.45  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----  244 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~----  244 (288)
                      ...+...++.+|||+|||+|..+..+++...+ .+|+|+|+++.+++.++++++.. |  ..++.++.+|+..++.    
T Consensus        76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~-g--~~~v~~~~~D~~~~~~~~~~  152 (274)
T 3ajd_A           76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM-G--VLNTIIINADMRKYKDYLLK  152 (274)
T ss_dssp             HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEESCHHHHHHHHHH
T ss_pred             HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh-C--CCcEEEEeCChHhcchhhhh
Confidence            44556677899999999999999999986433 69999999999999999999887 2  3489999999987654    


Q ss_pred             CCCccceEEec
Q 023019          245 ASSSIDAVHAG  255 (288)
Q Consensus       245 ~~~sfD~V~~~  255 (288)
                      .+++||+|++.
T Consensus       153 ~~~~fD~Vl~d  163 (274)
T 3ajd_A          153 NEIFFDKILLD  163 (274)
T ss_dssp             TTCCEEEEEEE
T ss_pred             ccccCCEEEEc
Confidence            26789999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.07  E-value=1.6e-10  Score=98.97  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p  243 (288)
                      .+.+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...++.++.+|+.+. +
T Consensus        49 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~  126 (239)
T 2hnk_A           49 GQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALETLQ  126 (239)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHHHH
Confidence            34444444444578999999999999999999854 4699999999999999999987762  123599999997642 2


Q ss_pred             --------------CCC--CccceEEeccccccCCCcc----ccc---ceEEEEec
Q 023019          244 --------------FAS--SSIDAVHAGAAIHCWSSPS----TGV---GVFFQVTL  276 (288)
Q Consensus       244 --------------~~~--~sfD~V~~~~vl~h~~d~~----~~l---G~lvi~t~  276 (288)
                                    |++  ++||+|++.....+.+..-    +.|   |.+++.+.
T Consensus       127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             HHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                          222  7899999987655443221    122   77777653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=8.8e-11  Score=99.30  Aligned_cols=100  Identities=10%  Similarity=0.025  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-CCC----Cc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS----SS  248 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~~~----~s  248 (288)
                      .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...++.++++|+.+. + +..    ++
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            4577999999999999999998754 5799999999999999999988762  234699999998643 2 111    78


Q ss_pred             cceEEeccccccCCC----ccccc---ceEEEEecC
Q 023019          249 IDAVHAGAAIHCWSS----PSTGV---GVFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~~vl~h~~d----~~~~l---G~lvi~t~~  277 (288)
                      ||+|++.....+...    ..+.|   |.+++....
T Consensus       141 fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          141 YDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            999997654332211    11222   777776554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.07  E-value=8.2e-11  Score=106.08  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-
Q 023019          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (288)
Q Consensus       167 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-  244 (288)
                      +.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.|++.|+++++.. +....++.++++|+.++.. 
T Consensus       142 ~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~~  218 (332)
T 2igt_A          142 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQR  218 (332)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHHH
Confidence            33444443 34578999999999999999999876  9999999999999999998876 2222259999999876432 


Q ss_pred             ---CCCccceEEec
Q 023019          245 ---ASSSIDAVHAG  255 (288)
Q Consensus       245 ---~~~sfD~V~~~  255 (288)
                         ..++||+|++.
T Consensus       219 ~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          219 EERRGSTYDIILTD  232 (332)
T ss_dssp             HHHHTCCBSEEEEC
T ss_pred             HHhcCCCceEEEEC
Confidence               15689999994

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.07  E-value=9e-10  Score=100.78  Aligned_cols=80  Identities=20%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCC-CCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~sfD~V~  253 (288)
                      .++.+|||+| |+|.++..+++.++..+|+|+|+|+.|++.|+++++.. |  ..++.++.+|+.+ +|. .+++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-g--~~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-G--YEDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH-T--CCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCCEEEEEChhhhhchhhccCCccEEE
Confidence            3578999999 99999999998877679999999999999999999887 2  2389999999998 764 357899999


Q ss_pred             eccccc
Q 023019          254 AGAAIH  259 (288)
Q Consensus       254 ~~~vl~  259 (288)
                      ++..++
T Consensus       247 ~~~p~~  252 (373)
T 2qm3_A          247 TDPPET  252 (373)
T ss_dssp             ECCCSS
T ss_pred             ECCCCc
Confidence            986554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.06  E-value=1.2e-09  Score=102.45  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~  244 (288)
                      .+...+...++.+|||+|||+|..+..+++..++ ++|+++|+++.+++.++++++..+   ..++.++.+|+..++  +
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~  326 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKAPEII  326 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCCSSSS
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhcchhh
Confidence            3445567778899999999999999999987544 699999999999999999998772   357999999999876  5


Q ss_pred             CCCccceEEe------ccccccCCC
Q 023019          245 ASSSIDAVHA------GAAIHCWSS  263 (288)
Q Consensus       245 ~~~sfD~V~~------~~vl~h~~d  263 (288)
                      ++++||+|++      ..++++.++
T Consensus       327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd  351 (450)
T 2yxl_A          327 GEEVADKVLLDAPCTSSGTIGKNPE  351 (450)
T ss_dssp             CSSCEEEEEEECCCCCGGGTTTSTT
T ss_pred             ccCCCCEEEEcCCCCCCeeeccChh
Confidence            5578999996      445555544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.05  E-value=9.9e-10  Score=99.74  Aligned_cols=104  Identities=11%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+...+......+|||||||+|.++..++++.|..+++..|. +.+++.|++++...   ...++.++.+|+...|++  
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~~--  243 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPLP--  243 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCCC--
Confidence            344444445577999999999999999999999889999998 88999999887654   257899999999876654  


Q ss_pred             ccceEEeccccccCCCccc--cc----------ceEEEEecC
Q 023019          248 SIDAVHAGAAIHCWSSPST--GV----------GVFFQVTLI  277 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~~  277 (288)
                      .+|+|++.++||+++|++.  .|          |++++....
T Consensus       244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            4799999999999998753  23          889988764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.04  E-value=6.3e-11  Score=101.68  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCC-Cc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS-SS  248 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~-~s  248 (288)
                      ++.+|||||||+|..+..+++.    ++..+|+|+|+|+.|++.|+.    .    ..++.++++|+.+.   +..+ .+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~----~~~v~~~~gD~~~~~~l~~~~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D----MENITLHQGDCSDLTTFEHLREMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G----CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c----CCceEEEECcchhHHHHHhhccCC
Confidence            4679999999999999999987    556799999999999998872    1    36899999999884   5433 47


Q ss_pred             cceEEeccc
Q 023019          249 IDAVHAGAA  257 (288)
Q Consensus       249 fD~V~~~~v  257 (288)
                      ||+|++...
T Consensus       153 fD~I~~d~~  161 (236)
T 2bm8_A          153 HPLIFIDNA  161 (236)
T ss_dssp             SSEEEEESS
T ss_pred             CCEEEECCc
Confidence            999998665

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.04  E-value=7.4e-10  Score=103.20  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=76.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~  244 (288)
                      ..+...+...++.+|||+|||+|..+..+++..++++|+++|+++.+++.++++++..    ..++.++.+|+..++  +
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~----g~~~~~~~~D~~~~~~~~  311 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQGDGRYPSQWC  311 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEECCTTCTHHHH
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc----CCCeEEEeCchhhchhhc
Confidence            3445566777889999999999999999999876679999999999999999999887    235789999999876  5


Q ss_pred             CCCccceEEe------ccccccCCC
Q 023019          245 ASSSIDAVHA------GAAIHCWSS  263 (288)
Q Consensus       245 ~~~sfD~V~~------~~vl~h~~d  263 (288)
                      ++++||+|++      ..++.+.++
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~  336 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPD  336 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTT
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcc
Confidence            6688999996      345555544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.04  E-value=2.7e-10  Score=101.46  Aligned_cols=87  Identities=11%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCCCC--CCCccceE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPF--ASSSIDAV  252 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~lp~--~~~sfD~V  252 (288)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+....++.++.+|+...+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3468999999999999999998755569999999999999999987421 01124689999999987653  46899999


Q ss_pred             EeccccccCC
Q 023019          253 HAGAAIHCWS  262 (288)
Q Consensus       253 ~~~~vl~h~~  262 (288)
                      ++.....+.+
T Consensus       174 i~d~~~~~~~  183 (304)
T 3bwc_A          174 IIDTTDPAGP  183 (304)
T ss_dssp             EEECC-----
T ss_pred             EECCCCcccc
Confidence            9976665543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.02  E-value=4.2e-11  Score=103.19  Aligned_cols=90  Identities=10%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~  245 (288)
                      .+...+...++.+|||||||+|..+..+++..+ .++|+++|+++.+++.|+++++..+  ...++.++.+|+.+. +..
T Consensus        51 ~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~~  128 (242)
T 3r3h_A           51 FMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTLHSL  128 (242)
T ss_dssp             HHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHH
Confidence            333333334477999999999999999998753 5799999999999999999998762  235899999998764 211


Q ss_pred             -----CCccceEEeccccc
Q 023019          246 -----SSSIDAVHAGAAIH  259 (288)
Q Consensus       246 -----~~sfD~V~~~~vl~  259 (288)
                           +++||+|++.....
T Consensus       129 ~~~~~~~~fD~V~~d~~~~  147 (242)
T 3r3h_A          129 LNEGGEHQFDFIFIDADKT  147 (242)
T ss_dssp             HHHHCSSCEEEEEEESCGG
T ss_pred             hhccCCCCEeEEEEcCChH
Confidence                 47899999876533

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.02  E-value=1e-09  Score=90.49  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE-EecCCCCC-
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP-  243 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~---------~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~-~~d~~~lp-  243 (288)
                      ..++.+|||+|||+|.++..+++..+.         .+|+|+|+|+.+              ...++.++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence            345889999999999999999998432         699999999831              02467888 88887653 


Q ss_pred             -------CCCCccceEEecccccc----CCCc-------cccc----------ceEEEEecCcccHHHHHh
Q 023019          244 -------FASSSIDAVHAGAAIHC----WSSP-------STGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       244 -------~~~~sfD~V~~~~vl~h----~~d~-------~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                             +++++||+|++...++.    ..+.       ..++          |.|++.++......++.+
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~  156 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQR  156 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHH
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHH
Confidence                   34568999999665443    2222       1222          999999888777666654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.02  E-value=1.2e-09  Score=97.34  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEecc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA  256 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~~~  256 (288)
                      .+|||||||+|.++..+++..+..+++++|+++.|++.|++++...   ...++.++.+|+.+.  .+++++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            4899999999999999999766679999999999999999987543   146899999998754  34568999999864


Q ss_pred             c
Q 023019          257 A  257 (288)
Q Consensus       257 v  257 (288)
                      .
T Consensus       168 ~  168 (317)
T 3gjy_A          168 F  168 (317)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.00  E-value=2.1e-10  Score=99.02  Aligned_cols=80  Identities=10%  Similarity=0.059  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C-----CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----ASS  247 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-----~~~  247 (288)
                      .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++.. | ...++.++.+|+.+. + +     .++
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g-~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-G-VDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-T-CGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C-CCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            3467999999999999999999854 579999999999999999998876 2 235799999998753 3 2     257


Q ss_pred             ccceEEeccc
Q 023019          248 SIDAVHAGAA  257 (288)
Q Consensus       248 sfD~V~~~~v  257 (288)
                      +||+|++...
T Consensus       156 ~fD~V~~d~~  165 (247)
T 1sui_A          156 SYDFIFVDAD  165 (247)
T ss_dssp             CBSEEEECSC
T ss_pred             CEEEEEEcCc
Confidence            8999998654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.00  E-value=1.5e-09  Score=98.19  Aligned_cols=100  Identities=10%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             CCCCcHHHHHHHHhh---c-CCCCCCeEEEEcCccchHHHHHHHhCCC-----CEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 023019          158 GFPGPEKEFELMKGY---L-KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQESNFP  228 (288)
Q Consensus       158 g~~~~~~~~~~l~~~---l-~~~~~~~VLDiGcG~G~~~~~l~~~~~~-----~~v~gvD~s~~~l~~A~~~~~~~~g~~  228 (288)
                      .+++|......+...   + ...++.+|||+|||+|.++..+++..+.     .+++|+|+++.+++.|+.++... |  
T Consensus       107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-g--  183 (344)
T 2f8l_A          107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-R--  183 (344)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-T--
T ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-C--
Confidence            366777654443333   2 4446789999999999999998877532     58999999999999999998876 2  


Q ss_pred             CCCEEEEEecCCCCCCCCCccceEEeccccccCC
Q 023019          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWS  262 (288)
Q Consensus       229 ~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~  262 (288)
                       .++.++++|+.... ..+.||+|+++-.+.+++
T Consensus       184 -~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~  215 (344)
T 2f8l_A          184 -QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYP  215 (344)
T ss_dssp             -CCCEEEESCTTSCC-CCCCEEEEEEECCCSEES
T ss_pred             -CCceEEECCCCCcc-ccCCccEEEECCCCCCcC
Confidence             36889999987633 457899999998776654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.99  E-value=6.8e-10  Score=97.92  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             HHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE-EecCCCCC---
Q 023019          169 MKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP---  243 (288)
Q Consensus       169 l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~-~~d~~~lp---  243 (288)
                      +++.+.. .++.+|||||||||.++..+++.+. .+|+|+|+|++|++.+.++        ..++... ..++..++   
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga-~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~  146 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQNGA-KLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVD  146 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGG
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhCCC-CEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhh
Confidence            3344433 3577999999999999999988864 5999999999999986543        2343322 23444333   


Q ss_pred             CCCCccceEEeccccccCCCccccc-------ceEEEE
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV-------GVFFQV  274 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l-------G~lvi~  274 (288)
                      ++..+||+|++..+++++......+       |.+++.
T Consensus       147 l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          147 FTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            3345699999988887653222211       888776

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.99  E-value=5.9e-10  Score=101.25  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      +..+|||||||+|.++..+++.++..+++++|+ +.+++.|++         ..++.++.+|+.+ +++  .||+|++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEcc
Confidence            467999999999999999999988789999999 788877654         2469999999987 665  499999999


Q ss_pred             ccccCCCcc--ccc-------------ceEEEEecC
Q 023019          257 AIHCWSSPS--TGV-------------GVFFQVTLI  277 (288)
Q Consensus       257 vl~h~~d~~--~~l-------------G~lvi~t~~  277 (288)
                      ++||++++.  +++             |++++..+.
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            999999876  444             678887764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.98  E-value=4.6e-10  Score=95.86  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCCC--Cc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFAS--SS  248 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~--~s  248 (288)
                      .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... | ...++.++.+|+.+    ++..+  ++
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g-~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-G-VAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-T-CGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C-CCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3467999999999999999998754 569999999999999999998776 2 13469999999753    33333  78


Q ss_pred             cceEEecccc
Q 023019          249 IDAVHAGAAI  258 (288)
Q Consensus       249 fD~V~~~~vl  258 (288)
                      ||+|++....
T Consensus       149 fD~V~~d~~~  158 (232)
T 3cbg_A          149 FDLIFIDADK  158 (232)
T ss_dssp             EEEEEECSCG
T ss_pred             cCEEEECCCH
Confidence            9999987653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.98  E-value=1.6e-10  Score=101.48  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE--EecCCCCCCCCCccceE
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPFASSSIDAV  252 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~--~~d~~~lp~~~~sfD~V  252 (288)
                      ..++.+|||+|||+|.++..+++. .  +|+|+|+++ |+..++++.... .....++.++  ++|+..+|  +++||+|
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~V  152 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME--PFQADTV  152 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence            456889999999999999999988 3  899999999 654433210000 0001268888  89998876  6899999


Q ss_pred             EeccccccCCCcc-------ccc----------c--eEEEEecCcccH
Q 023019          253 HAGAAIHCWSSPS-------TGV----------G--VFFQVTLIIHVV  281 (288)
Q Consensus       253 ~~~~vl~h~~d~~-------~~l----------G--~lvi~t~~~~~l  281 (288)
                      ++..+ ++..++.       .++          |  .|++.++.+...
T Consensus       153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~  199 (276)
T 2wa2_A          153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSC  199 (276)
T ss_dssp             EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSH
T ss_pred             EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCch
Confidence            99877 4433321       123          8  899988876543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.98  E-value=4.7e-10  Score=102.59  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCc------cchHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCG------SGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG------~G~~~~~l~~-~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~  235 (288)
                      ...++.+...+.. ++.+|||||||      +|..+..+.+ ..+.++|+|+|+|+.|.        ..    ..++.++
T Consensus       203 ~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~----~~rI~fv  269 (419)
T 3sso_A          203 TPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD----ELRIRTI  269 (419)
T ss_dssp             HHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC----BTTEEEE
T ss_pred             HHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc----CCCcEEE
Confidence            3445666655543 46899999999      6655555554 45678999999999983        11    4689999


Q ss_pred             EecCCCCCCC------CCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          236 RADISRLPFA------SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       236 ~~d~~~lp~~------~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ++|+.++++.      +++||+|++.. .+++.++..++          |.|++.+..
T Consensus       270 ~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          270 QGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             ECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             EecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999999887      78999999865 46666665555          888887765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.97  E-value=2.1e-10  Score=100.21  Aligned_cols=104  Identities=20%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE--EecCCCCCCCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPFAS  246 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~--~~d~~~lp~~~  246 (288)
                      +.+.....++.+|||+|||+|.++..+++.   .+|+|+|+++ |+..++++.... .....++.++  ++|+..++  +
T Consensus        66 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~  138 (265)
T 2oxt_A           66 MEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP--V  138 (265)
T ss_dssp             HHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC--C
T ss_pred             HHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC--C
Confidence            333333456889999999999999999987   3899999999 643332210000 0001168888  89999876  6


Q ss_pred             CccceEEeccccccCCCcc-------ccc----------c--eEEEEecCccc
Q 023019          247 SSIDAVHAGAAIHCWSSPS-------TGV----------G--VFFQVTLIIHV  280 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~-------~~l----------G--~lvi~t~~~~~  280 (288)
                      ++||+|++..+ ++..++.       .++          |  .|++.++.+..
T Consensus       139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~  190 (265)
T 2oxt_A          139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYS  190 (265)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS
T ss_pred             CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC
Confidence            89999999877 5443321       123          8  89998887544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.97  E-value=3e-09  Score=93.32  Aligned_cols=84  Identities=19%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+.  +|.+|||+|||+|.++..+++.+. .+|+++|+++.+++.++++++.+  ....++.++.+|+.+++. .
T Consensus       117 ~ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N--~v~~~v~~~~~D~~~~~~-~  190 (278)
T 3k6r_A          117 VRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG-E  190 (278)
T ss_dssp             HHHHHHCC--TTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC-C
T ss_pred             HHHHHhcC--CCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCcHHHhcc-c
Confidence            44555554  489999999999999999998874 58999999999999999999886  235679999999998763 5


Q ss_pred             CccceEEecc
Q 023019          247 SSIDAVHAGA  256 (288)
Q Consensus       247 ~sfD~V~~~~  256 (288)
                      +.||.|+++.
T Consensus       191 ~~~D~Vi~~~  200 (278)
T 3k6r_A          191 NIADRILMGY  200 (278)
T ss_dssp             SCEEEEEECC
T ss_pred             cCCCEEEECC
Confidence            7899999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.96  E-value=1.6e-09  Score=95.26  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp  243 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.|++.++++.  .     .++.++++|+.+++
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-----~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-----ELLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-----GGEEEEESCGGGCC
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-----CCcEEEECChhcCC
Confidence            466777777778899999999999999999998761  23999999999999999983  2     47999999999988


Q ss_pred             CCC
Q 023019          244 FAS  246 (288)
Q Consensus       244 ~~~  246 (288)
                      +++
T Consensus       104 ~~~  106 (279)
T 3uzu_A          104 FGS  106 (279)
T ss_dssp             GGG
T ss_pred             hhH
Confidence            754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.95  E-value=3.9e-09  Score=95.10  Aligned_cols=82  Identities=16%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCC--CCCCCccceE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAV  252 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~l--p~~~~sfD~V  252 (288)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.|++.|++++... .+....++.++.+|+.+.  .+++++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            3467999999999999999998765579999999999999999987641 011146899999998753  2346789999


Q ss_pred             Eeccc
Q 023019          253 HAGAA  257 (288)
Q Consensus       253 ~~~~v  257 (288)
                      ++...
T Consensus       199 i~d~~  203 (334)
T 1xj5_A          199 IVDSS  203 (334)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.95  E-value=5.2e-10  Score=94.78  Aligned_cols=89  Identities=11%  Similarity=0.044  Sum_probs=68.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-  243 (288)
                      +.+.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++.. | ...++.++.+|+.+. + 
T Consensus        59 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g-~~~~i~~~~~d~~~~~~~  136 (229)
T 2avd_A           59 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-E-AEHKIDLRLKPALETLDE  136 (229)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-T-CTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-C-CCCeEEEEEcCHHHHHHH
Confidence            3333333334578999999999999999998754 569999999999999999998876 2 236899999998643 1 


Q ss_pred             CCC----CccceEEeccc
Q 023019          244 FAS----SSIDAVHAGAA  257 (288)
Q Consensus       244 ~~~----~sfD~V~~~~v  257 (288)
                      +.+    ++||+|++...
T Consensus       137 ~~~~~~~~~~D~v~~d~~  154 (229)
T 2avd_A          137 LLAAGEAGTFDVAVVDAD  154 (229)
T ss_dssp             HHHTTCTTCEEEEEECSC
T ss_pred             HHhcCCCCCccEEEECCC
Confidence            211    68999999654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.95  E-value=1.3e-09  Score=97.40  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CC-CCCCCEEEEEecCCC-CCCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SN-FPKENFLLVRADISR-LPFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g-~~~~~i~~~~~d~~~-lp~~~~sfD~V~  253 (288)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+ ....++.++.+|+.+ ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            467999999999999999998755569999999999999999987641 01 114689999999876 344568899999


Q ss_pred             ecccccc
Q 023019          254 AGAAIHC  260 (288)
Q Consensus       254 ~~~vl~h  260 (288)
                      +....++
T Consensus       157 ~d~~~~~  163 (314)
T 1uir_A          157 IDLTDPV  163 (314)
T ss_dssp             EECCCCB
T ss_pred             ECCCCcc
Confidence            9765543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.95  E-value=5.9e-11  Score=102.30  Aligned_cols=82  Identities=13%  Similarity=0.238  Sum_probs=68.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++..     ..++.++++|+.+++++
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCC
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCcc
Confidence            35667777777788999999999999999999874  999999999999999876542     35799999999999877


Q ss_pred             C-CccceEEec
Q 023019          246 S-SSIDAVHAG  255 (288)
Q Consensus       246 ~-~sfD~V~~~  255 (288)
                      + ++| .|+++
T Consensus        91 ~~~~f-~vv~n  100 (245)
T 1yub_A           91 NKQRY-KIVGN  100 (245)
T ss_dssp             CSSEE-EEEEE
T ss_pred             cCCCc-EEEEe
Confidence            4 688 56654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.94  E-value=1.5e-09  Score=96.56  Aligned_cols=82  Identities=13%  Similarity=0.155  Sum_probs=65.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCC-CCCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~  253 (288)
                      ..+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+....++.++.+|+.+ ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            3468999999999999999998865579999999999999999987641 01114689999999865 344568899999


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      +...
T Consensus       174 ~d~~  177 (304)
T 2o07_A          174 TDSS  177 (304)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            8654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.94  E-value=2.9e-09  Score=93.38  Aligned_cols=82  Identities=10%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++.... +....++.++.+|+.+ ++..+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999999999999987444699999999999999999875420 1224689999999875 3444678999999


Q ss_pred             cccc
Q 023019          255 GAAI  258 (288)
Q Consensus       255 ~~vl  258 (288)
                      ....
T Consensus       155 d~~~  158 (275)
T 1iy9_A          155 DSTE  158 (275)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            6543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.93  E-value=1.7e-09  Score=99.73  Aligned_cols=77  Identities=19%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----CCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~sfD~V  252 (288)
                      ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++++.. |....++.++++|+.+...    ...+||+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~-~~V~~vD~s~~al~~a~~n~~~n-gl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            578999999999999999999863 59999999999999999999876 2101279999999876521    14689999


Q ss_pred             Eec
Q 023019          253 HAG  255 (288)
Q Consensus       253 ~~~  255 (288)
                      ++.
T Consensus       298 i~d  300 (396)
T 3c0k_A          298 VMD  300 (396)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            996

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.93  E-value=1.1e-10  Score=99.93  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             HHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +++.+.. ..+.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|+++
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHT
T ss_pred             HHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHh
Confidence            3344433 3467999999999999999999864 4999999999999998775

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.93  E-value=1.6e-09  Score=106.85  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~  255 (288)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++++.. |....++.++++|+.+ ++...++||+|++.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~n-gl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLN-GLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            478999999999999999998765 57999999999999999999887 3323579999999876 44456789999984


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       617 P  617 (703)
T 3v97_A          617 P  617 (703)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.93  E-value=4.2e-10  Score=91.55  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=68.3

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---CCCcc
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSI  249 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~sf  249 (288)
                      ++.++|.+|||||||.                +++|+|+.|++.|+++..       .++.+.++|+.++++   ++++|
T Consensus         8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence            3556799999999996                238999999999998742       248899999999887   78999


Q ss_pred             ceEEeccccccC-CCccccc----------ceEEEEec
Q 023019          250 DAVHAGAAIHCW-SSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       250 D~V~~~~vl~h~-~d~~~~l----------G~lvi~t~  276 (288)
                      |+|++..+++|+ +++..++          |.|++..+
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999999999999 8887777          88888654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.92  E-value=3.3e-09  Score=87.99  Aligned_cols=95  Identities=14%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---------
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---------  245 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---------  245 (288)
                      ..++.+|||+|||+|.++..+++.+  .+|+|+|+++..              ...++.++++|+.+.+..         
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            3568999999999999999999884  599999999831              145799999999886521         


Q ss_pred             --CCccceEEeccccccCC----Cc-------cc-------cc---ceEEEEecCcccHHHHH
Q 023019          246 --SSSIDAVHAGAAIHCWS----SP-------ST-------GV---GVFFQVTLIIHVVEDLA  285 (288)
Q Consensus       246 --~~sfD~V~~~~vl~h~~----d~-------~~-------~l---G~lvi~t~~~~~l~el~  285 (288)
                        .++||+|++........    |.       ..       .|   |.|++..+......++.
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~  149 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFI  149 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHH
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHH
Confidence              14899999965322111    11       11       22   99999998776665554

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.92  E-value=9.6e-10  Score=94.23  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C-----CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----ASS  247 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-----~~~  247 (288)
                      .++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++.. | ...++.++.+|+.+. + +     +++
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g-~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-G-VEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-T-CGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C-CCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            4467999999999999999998854 579999999999999999998876 2 234799999998753 2 2     257


Q ss_pred             ccceEEeccc
Q 023019          248 SIDAVHAGAA  257 (288)
Q Consensus       248 sfD~V~~~~v  257 (288)
                      +||+|++...
T Consensus       147 ~fD~I~~d~~  156 (237)
T 3c3y_A          147 SYDFGFVDAD  156 (237)
T ss_dssp             CEEEEEECSC
T ss_pred             CcCEEEECCc
Confidence            8999998654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.92  E-value=5.7e-09  Score=98.45  Aligned_cols=82  Identities=13%  Similarity=0.059  Sum_probs=68.8

Q ss_pred             HhhcCCC--CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-C
Q 023019          170 KGYLKPV--LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-A  245 (288)
Q Consensus       170 ~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~  245 (288)
                      ...+...  ++.+|||+|||+|..+..+++.. ..+.|+++|+|+.+++.++++++..+   ..++.++++|+..++. .
T Consensus       108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~~~~  184 (479)
T 2frx_A          108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFGAAV  184 (479)
T ss_dssp             HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHHHHS
T ss_pred             HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhhhhc
Confidence            3445555  78999999999999999999874 34699999999999999999998872   3579999999998764 4


Q ss_pred             CCccceEEe
Q 023019          246 SSSIDAVHA  254 (288)
Q Consensus       246 ~~sfD~V~~  254 (288)
                      +++||+|++
T Consensus       185 ~~~fD~Il~  193 (479)
T 2frx_A          185 PEMFDAILL  193 (479)
T ss_dssp             TTCEEEEEE
T ss_pred             cccCCEEEE
Confidence            678999998

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.92  E-value=1.8e-09  Score=95.69  Aligned_cols=80  Identities=11%  Similarity=0.111  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+....++.++.+|+.. ++..+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            357999999999999999998755579999999999999999987541 01114689999999865 3444678999998


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus       170 d~  171 (296)
T 1inl_A          170 DS  171 (296)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.90  E-value=3.6e-09  Score=95.43  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|||+|||+|.++.. ++.  ..+|+|+|+|+.+++.|+++++.. + ...++.++++|+.+..   ++||+|++.-
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n-~-l~~~v~~~~~D~~~~~---~~fD~Vi~dp  266 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLN-K-LEHKIIPILSDVREVD---VKGNRVIMNL  266 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHT-T-CTTTEEEEESCGGGCC---CCEEEEEECC
T ss_pred             CCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHc-C-CCCcEEEEECChHHhc---CCCcEEEECC
Confidence            488999999999999999 773  359999999999999999999886 2 2257999999998775   7899999852


Q ss_pred             ccc---cCCCccccc---ceEEEEecCcc
Q 023019          257 AIH---CWSSPSTGV---GVFFQVTLIIH  279 (288)
Q Consensus       257 vl~---h~~d~~~~l---G~lvi~t~~~~  279 (288)
                      .-.   .+....+.+   |.+++.++...
T Consensus       267 P~~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          267 PKFAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             TTTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             cHhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            211   111111122   78888777654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.90  E-value=1.8e-09  Score=101.23  Aligned_cols=83  Identities=16%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      .+...+...++.+|||+|||+|..+..+++... .+.|+++|+|+.+++.++++++.. |  .. +.++++|+..++ +.
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~-G--~~-v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW-G--AP-LAVTQAPPRALAEAF  167 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-C--CC-CEEECSCHHHHHHHH
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C--Ce-EEEEECCHHHhhhhc
Confidence            344556677899999999999999999998743 369999999999999999999887 2  23 889999988765 34


Q ss_pred             CCccceEEe
Q 023019          246 SSSIDAVHA  254 (288)
Q Consensus       246 ~~sfD~V~~  254 (288)
                      +++||+|++
T Consensus       168 ~~~FD~Il~  176 (464)
T 3m6w_A          168 GTYFHRVLL  176 (464)
T ss_dssp             CSCEEEEEE
T ss_pred             cccCCEEEE
Confidence            678999996

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.90  E-value=1.3e-08  Score=94.51  Aligned_cols=73  Identities=25%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++.. +  .. +.++.+|+.++...  +||+|++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~n-g--l~-v~~~~~d~~~~~~~--~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEIN-N--VD-AEFEVASDREVSVK--GFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T--CC-EEEEECCTTTCCCT--TCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-C--Cc-EEEEECChHHcCcc--CCCEEEEc
Confidence            4578999999999999999998865  9999999999999999998876 2  23 99999999987532  89999985


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       361 P  361 (425)
T 2jjq_A          361 P  361 (425)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.89  E-value=2.6e-09  Score=92.41  Aligned_cols=73  Identities=15%  Similarity=0.382  Sum_probs=62.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++.|++.++++   .    ..++.++++|+..++++
T Consensus        20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~---~----~~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI---G----DERLEVINEDASKFPFC   91 (249)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS---C----CTTEEEECSCTTTCCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc---c----CCCeEEEEcchhhCChh
Confidence            4667777777778999999999999999999885 24999999999999999876   1    35899999999999876


Q ss_pred             C
Q 023019          246 S  246 (288)
Q Consensus       246 ~  246 (288)
                      +
T Consensus        92 ~   92 (249)
T 3ftd_A           92 S   92 (249)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.88  E-value=4.2e-09  Score=96.72  Aligned_cols=78  Identities=14%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC---CCCccce
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF---ASSSIDA  251 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~---~~~sfD~  251 (288)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|+++++.. |....++.++++|+.+. +.   ...+||+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n-~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~  288 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHLTYDI  288 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence            3578999999999999999998753 48999999999999999999886 22112899999998753 21   2458999


Q ss_pred             EEec
Q 023019          252 VHAG  255 (288)
Q Consensus       252 V~~~  255 (288)
                      |++.
T Consensus       289 Ii~D  292 (385)
T 2b78_A          289 IIID  292 (385)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.88  E-value=2.4e-09  Score=98.70  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----CCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~sfD~V  252 (288)
                      ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... + ...++.++++|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~-~~v~~vD~s~~~l~~a~~n~~~n-~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN-G-VEDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-T-CGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-C-CCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            578999999999999999998853 59999999999999999999876 2 12279999999876532    25789999


Q ss_pred             Eec
Q 023019          253 HAG  255 (288)
Q Consensus       253 ~~~  255 (288)
                      ++.
T Consensus       294 i~d  296 (396)
T 2as0_A          294 VLD  296 (396)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.88  E-value=3e-09  Score=95.35  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      .+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.... +....+++++.+|+.+ ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4679999999999999999987555799999999999999999876510 1114689999999865 3334578999998


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus       196 d~  197 (321)
T 2pt6_A          196 DS  197 (321)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.87  E-value=1.2e-09  Score=94.75  Aligned_cols=84  Identities=7%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++.+|||||||+|.++. +. .+...+|+|+|+++.|++.+++++...     .++.++++|+..++++
T Consensus        10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCCHH
T ss_pred             HHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchhhCCHH
Confidence            4566667777778899999999999999 65 455123999999999999999875432     4799999999988764


Q ss_pred             CC-----ccceEEecc
Q 023019          246 SS-----SIDAVHAGA  256 (288)
Q Consensus       246 ~~-----sfD~V~~~~  256 (288)
                      +.     ..|.|+++.
T Consensus        83 ~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHHHTSCEEEEEEC
T ss_pred             HhhcccCCceEEEECC
Confidence            32     245676654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.87  E-value=1.4e-09  Score=99.71  Aligned_cols=74  Identities=23%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----CCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~sfD~V  252 (288)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+++++.. |  ..++.++++|+.+...    ..++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n-~--~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLN-G--LGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHT-T--CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc-C--CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            57899999999999999999884  49999999999999999999887 2  3459999999876532    25789999


Q ss_pred             Eec
Q 023019          253 HAG  255 (288)
Q Consensus       253 ~~~  255 (288)
                      ++.
T Consensus       284 i~d  286 (382)
T 1wxx_A          284 VLD  286 (382)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.86  E-value=5.4e-09  Score=96.23  Aligned_cols=74  Identities=14%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~  255 (288)
                      ++.+|||+|||+|.++..+++.+.  .|+++|+|+.|++.|+++++.. |   ....+.++|+.+. +...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~n-g---~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRL-G---LRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T---CCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHh-C---CCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            488999999999999999999876  6999999999999999999887 2   2235668888754 2213449999985


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      -
T Consensus       288 p  288 (393)
T 4dmg_A          288 P  288 (393)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.86  E-value=1.6e-08  Score=94.67  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=89.1

Q ss_pred             cchhhhhHHHHhhhhh-----cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-------------CC
Q 023019          140 PFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LF  201 (288)
Q Consensus       140 ~~~s~~~~~~wr~~~~-----~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-------------~~  201 (288)
                      ..+...|+....+...     .+.++.|....+.+.+.+.+.++.+|||.|||+|.++..+.+..             ..
T Consensus       129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~  208 (445)
T 2okc_A          129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC
Confidence            3445556654443221     12378888888889988888788899999999999998887642             12


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccC
Q 023019          202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       202 ~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~  261 (288)
                      ..++|+|+++.+++.|+.++... |....++.+.++|....+.. .+||+|+++-.+.+.
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~-g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLH-GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTR  266 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHT-TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHh-CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCc
Confidence            47999999999999999988776 22212677899999877654 489999998766654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.84  E-value=1e-08  Score=94.23  Aligned_cols=90  Identities=14%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------------CEEEE
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLVVA  206 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~g  206 (288)
                      ....++......++..|||++||+|.++..++..+.+                                      .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            3455666666667889999999999999988876422                                      47999


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       207 vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      +|+++.|++.|++++...+  ....+.+.++|+.+++.+ .+||+|+++--
T Consensus       263 vDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP  310 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKSE-DEFGFIITNPP  310 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCCS-CBSCEEEECCC
T ss_pred             EECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCcC-CCCcEEEECCC
Confidence            9999999999999998872  124799999999988764 58999999644

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.84  E-value=8.7e-09  Score=90.68  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-CCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~sfD~V~  253 (288)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++.... +....++.++.+|+.+. +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            34689999999999999999987656799999999999999999875421 01146899999998753 33367899999


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      +...
T Consensus       157 ~d~~  160 (283)
T 2i7c_A          157 VDSS  160 (283)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            9554

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.84  E-value=2.8e-09  Score=95.31  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++.... +....++.++.+|+.+ ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4679999999999999999987656799999999999999999875420 0114689999999875 3335678999998


Q ss_pred             ccc
Q 023019          255 GAA  257 (288)
Q Consensus       255 ~~v  257 (288)
                      ...
T Consensus       188 d~~  190 (314)
T 2b2c_A          188 DSS  190 (314)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            553

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.84  E-value=1.2e-08  Score=93.92  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------------CEE
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLV  204 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v  204 (288)
                      +.....++......++..|||.+||+|.++..++..+.+                                      .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            333556666666667889999999999999888876432                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       205 ~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      +|+|+++.|++.|++++...+  ....+.+.++|+.+++.+ .+||+|+++
T Consensus       267 ~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~~-~~fD~Iv~N  314 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQTE-DEYGVVVAN  314 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCCC-CCSCEEEEC
T ss_pred             EEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCCC-CCCCEEEEC
Confidence            999999999999999998872  234699999999998764 589999998

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.82  E-value=1.7e-08  Score=92.16  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      .+.+.+++... +.+|||+|||+|.++..+++...  +|+|+|+|+.+++.|+++++.. |  ..++.++.+|+.++.  
T Consensus       203 ~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~n-g--~~~v~~~~~d~~~~~~~  276 (369)
T 3bt7_A          203 LEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAAN-H--IDNVQIIRMAAEEFTQA  276 (369)
T ss_dssp             HHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHT-T--CCSEEEECCCSHHHHHH
T ss_pred             HHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-C--CCceEEEECCHHHHHHH
Confidence            44555555543 57899999999999999988665  9999999999999999999876 2  358999999987642  


Q ss_pred             CCC--------------CccceEEeccccccCC-Cccccc---ceEEEEecCcccHHH
Q 023019          244 FAS--------------SSIDAVHAGAAIHCWS-SPSTGV---GVFFQVTLIIHVVED  283 (288)
Q Consensus       244 ~~~--------------~sfD~V~~~~vl~h~~-d~~~~l---G~lvi~t~~~~~l~e  283 (288)
                      +..              .+||+|+..---.-+. ...+.+   |.+++.+-.+.++..
T Consensus       277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ar  334 (369)
T 3bt7_A          277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCK  334 (369)
T ss_dssp             HSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHH
T ss_pred             HhhccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            121              3799998732111000 001111   888888877766553

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.81  E-value=9.8e-10  Score=95.55  Aligned_cols=88  Identities=16%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH-------HHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-------~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      ...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++       .+++.|+++++..+  ...++.++++|+.++
T Consensus        76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           76 AKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAEQ  151 (258)
T ss_dssp             HHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHHH
T ss_pred             HHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHHH
Confidence            3334444578999999999999999999865  999999999       99999988766541  123599999999874


Q ss_pred             -C-CCC--CccceEEeccccccC
Q 023019          243 -P-FAS--SSIDAVHAGAAIHCW  261 (288)
Q Consensus       243 -p-~~~--~sfD~V~~~~vl~h~  261 (288)
                       + +++  ++||+|++.-.+.|.
T Consensus       152 l~~~~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          152 MPALVKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHHHHHCCCSEEEECCCC---
T ss_pred             HHhhhccCCCccEEEECCCCCCc
Confidence             3 444  789999998766653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.81  E-value=2e-08  Score=92.04  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=71.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------------CEEEE
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLVVA  206 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~g  206 (288)
                      ....++......++..|||.+||+|.++..++..+.+                                      .+++|
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            3455666666667889999999999999988876432                                      36999


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       207 vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      +|+++.|++.|++++...+  ....+.+.++|+.+++.+ .+||+|+++
T Consensus       262 vDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-~~fD~Iv~N  307 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-KINGVLISN  307 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-CCSCEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-CCcCEEEEC
Confidence            9999999999999998872  234699999999998765 489999997

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.80  E-value=6.8e-09  Score=90.40  Aligned_cols=89  Identities=12%  Similarity=0.044  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .+.+|||||||+|.++..+.+. + .+|+++|+++.|++.|++++... .+...+++.++.+|+.+..   ++||+|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4679999999999999999888 5 79999999999999999876431 0012468999999998765   789999986


Q ss_pred             cccccCCCccccc----------ceEEEEe
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                           ..+|..++          |.+++..
T Consensus       147 -----~~dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 -----QEPDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence                 34454433          7777754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.79  E-value=8.3e-09  Score=90.70  Aligned_cols=78  Identities=13%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CC-------CCCCEEEEEecCCCC-CCCCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-------PKENFLLVRADISRL-PFASS  247 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~-------~~~~i~~~~~d~~~l-p~~~~  247 (288)
                      .+.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++ ... +.       ...++.++.+|+.+. +. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            4679999999999999999988 5579999999999999999987 220 11       246899999998652 33 57


Q ss_pred             ccceEEeccc
Q 023019          248 SIDAVHAGAA  257 (288)
Q Consensus       248 sfD~V~~~~v  257 (288)
                      +||+|++...
T Consensus       152 ~fD~Ii~d~~  161 (281)
T 1mjf_A          152 GFDVIIADST  161 (281)
T ss_dssp             CEEEEEEECC
T ss_pred             CeeEEEECCC
Confidence            8999998654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.77  E-value=3.7e-08  Score=87.72  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC-
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-  246 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~-  246 (288)
                      +...+...++.+|||+|||+|..+..+++. +..++|+++|+++.+++.++++++..+   ..++.++.+|+..++... 
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~~  170 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDP  170 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCG
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCcccc
Confidence            344566778999999999999999999886 344699999999999999999998872   357999999998775432 


Q ss_pred             --CccceEEe
Q 023019          247 --SSIDAVHA  254 (288)
Q Consensus       247 --~sfD~V~~  254 (288)
                        .+||.|++
T Consensus       171 ~~~~fD~Vl~  180 (309)
T 2b9e_A          171 RYHEVHYILL  180 (309)
T ss_dssp             GGTTEEEEEE
T ss_pred             ccCCCCEEEE
Confidence              57999997

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.75  E-value=6.8e-09  Score=97.12  Aligned_cols=85  Identities=15%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~  245 (288)
                      .+...+...++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.++++++..+   ..++.++.+|+..++ ..
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~~  172 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPHF  172 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhhc
Confidence            34455667789999999999999999998863 33699999999999999999998872   357999999988764 23


Q ss_pred             CCccceEEec
Q 023019          246 SSSIDAVHAG  255 (288)
Q Consensus       246 ~~sfD~V~~~  255 (288)
                      +++||+|++.
T Consensus       173 ~~~FD~Il~D  182 (456)
T 3m4x_A          173 SGFFDRIVVD  182 (456)
T ss_dssp             TTCEEEEEEE
T ss_pred             cccCCEEEEC
Confidence            5789999984

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.70  E-value=1.2e-08  Score=93.98  Aligned_cols=76  Identities=11%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC-CCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF-ASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~-~~~sfD~V~~  254 (288)
                      ++.+|||+|||+|..+..+++.+.  +|+|+|+|+.|++.|+++++...+. ..++.++++|+.+. +. ++++||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g-l~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE-GKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT-TCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC-CCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            378999999999999999998875  9999999999999999998765100 36899999999874 32 2468999998


Q ss_pred             c
Q 023019          255 G  255 (288)
Q Consensus       255 ~  255 (288)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.68  E-value=1.9e-08  Score=92.92  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~  235 (288)
                      +.++.|....+.+.+.+...++.+|||+|||+|.++..++++. +..+++|+|+++.+++.|            .++.++
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~   86 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI   86 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence            3467788778888888876567799999999999999999863 346999999999988766            257899


Q ss_pred             EecCCCCCCCCCccceEEec
Q 023019          236 RADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       236 ~~d~~~lp~~~~sfD~V~~~  255 (288)
                      ++|+...+. .++||+|+++
T Consensus        87 ~~D~~~~~~-~~~fD~Ii~N  105 (421)
T 2ih2_A           87 LADFLLWEP-GEAFDLILGN  105 (421)
T ss_dssp             ESCGGGCCC-SSCEEEEEEC
T ss_pred             eCChhhcCc-cCCCCEEEEC
Confidence            999987653 4689999995

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.66  E-value=4.1e-09  Score=93.80  Aligned_cols=94  Identities=14%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeC----CHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCCCCCCCcc
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI  249 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~----s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~sf  249 (288)
                      ..++.+|||+|||+|.++..+++. .  +|+|+|+    ++.+++.+.  .+..   ...++.++++ |+..++  .++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~~~~~--~~~~---~~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHEEPIP--MSTY---GWNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSCCCCC--CCST---TGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHHHHHH--hhhc---CCCCeEEEeccccccCC--cCCC
Confidence            345789999999999999999988 3  7999999    564432111  0000   1256899999 888775  5689


Q ss_pred             ceEEeccccc---cCCCcc---ccc----------ceEEEEecCc
Q 023019          250 DAVHAGAAIH---CWSSPS---TGV----------GVFFQVTLII  278 (288)
Q Consensus       250 D~V~~~~vl~---h~~d~~---~~l----------G~lvi~t~~~  278 (288)
                      |+|++..+++   +..+..   .+|          |.|++.++.+
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999976643   222221   122          8899888766

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.55  E-value=3.9e-07  Score=87.05  Aligned_cols=115  Identities=20%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             cchhhhhHHHHhhhhh-----cCCCCCcHHHHHHHHhhcC----CCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEE
Q 023019          140 PFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVAL  207 (288)
Q Consensus       140 ~~~s~~~~~~wr~~~~-----~~g~~~~~~~~~~l~~~l~----~~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gv  207 (288)
                      ..+...|+...++...     .+.|++|....+.+.+.+.    +.++.+|||.+||+|.++..+.+..   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            4566667766554331     2348899988888888776    4568899999999999998888763   24589999


Q ss_pred             eCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--C-CCCCccceEEec
Q 023019          208 DYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P-FASSSIDAVHAG  255 (288)
Q Consensus       208 D~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p-~~~~sfD~V~~~  255 (288)
                      |+++.+++.|+.++... |....++.+.++|....  | .....||+|+++
T Consensus       255 Eid~~~~~lA~~Nl~l~-gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaN  304 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILH-GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMN  304 (542)
T ss_dssp             ESCHHHHHHHHHHHHHT-TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEEC
T ss_pred             ECcHHHHHHHHHHHHHc-CCCcCccceEecceecccccccccccccEEEec
Confidence            99999999999998776 33235688999998866  3 456789999986

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.51  E-value=1.1e-07  Score=82.50  Aligned_cols=92  Identities=15%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             HHHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-C--C---CCCCEEEEEec
Q 023019          167 ELMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N--F---PKENFLLVRAD  238 (288)
Q Consensus       167 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g--~---~~~~i~~~~~d  238 (288)
                      +.+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|+++.+++.+++.++... +  .   ...++.++++|
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            345555655556  8999999999999999999876  89999999998777776654220 0  0   01468999999


Q ss_pred             CCC-CCCCCCccceEEecccccc
Q 023019          239 ISR-LPFASSSIDAVHAGAAIHC  260 (288)
Q Consensus       239 ~~~-lp~~~~sfD~V~~~~vl~h  260 (288)
                      +.+ ++.....||+|++.-.+.+
T Consensus       154 ~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHHHhCcccCCEEEEcCCCCC
Confidence            875 3322247999999766654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.50  E-value=1.6e-07  Score=82.70  Aligned_cols=95  Identities=15%  Similarity=0.023  Sum_probs=63.8

Q ss_pred             cCCCCCCeEEEEcCc------cchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEE-EEecCCCCCC
Q 023019          173 LKPVLGGNIIDASCG------SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPF  244 (288)
Q Consensus       173 l~~~~~~~VLDiGcG------~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~-~~~d~~~lp~  244 (288)
                      +...++.+|||+|||      +|.  ..+++. ++..+|+|+|+|+. +               .++.+ +++|+.++++
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~  120 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHT  120 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCC
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCc
Confidence            345678899999994      466  444444 33569999999996 1               25677 9999998876


Q ss_pred             CCCccceEEecccccc-----CCCcc------ccc----------ceEEEEecCcccHHHHHh
Q 023019          245 ASSSIDAVHAGAAIHC-----WSSPS------TGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h-----~~d~~------~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      + ++||+|+++...+.     .....      .++          |.|++..+......++.+
T Consensus       121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~  182 (290)
T 2xyq_A          121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYK  182 (290)
T ss_dssp             S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHH
T ss_pred             c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHH
Confidence            4 78999999643221     11110      122          999998877665555543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.47  E-value=4.7e-07  Score=86.63  Aligned_cols=103  Identities=10%  Similarity=0.029  Sum_probs=78.5

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC------------------CCEEEEEeCCHHHHHHHH
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL------------------FSLVVALDYSENMLKQCY  218 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~------------------~~~v~gvD~s~~~l~~A~  218 (288)
                      +.+++|....+.+.+.+.+.++.+|||.+||+|.++..+.+...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            34888888888888888887888999999999999988776420                  137999999999999999


Q ss_pred             HHHHhcCCCCC---CCEEEEEecCCCCC-CCCCccceEEecccccc
Q 023019          219 EFVQQESNFPK---ENFLLVRADISRLP-FASSSIDAVHAGAAIHC  260 (288)
Q Consensus       219 ~~~~~~~g~~~---~~i~~~~~d~~~lp-~~~~sfD~V~~~~vl~h  260 (288)
                      .++... |...   ....+.++|....+ ...+.||+|+++--+..
T Consensus       229 ~nl~l~-gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~  273 (541)
T 2ar0_A          229 MNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS  273 (541)
T ss_dssp             HHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTT
T ss_pred             HHHHHh-CCCccccccCCeEeCCCcccccccccCCeEEEECCCccc
Confidence            988766 2211   02678899987653 34578999999755443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.46  E-value=5.5e-07  Score=88.75  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC------------------------------------------CC
Q 023019          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG------------------------------------------LF  201 (288)
Q Consensus       164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~------------------------------------------~~  201 (288)
                      .....++......++..|||.+||+|.++..++..+                                          +.
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            334556666666678899999999999998877652                                          11


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEec
Q 023019          202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG  255 (288)
Q Consensus       202 ~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~~  255 (288)
                      ..++|+|+++.|++.|++++...+  ....+.+.++|+.++  |...++||+|+++
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeC
Confidence            479999999999999999998872  234589999999887  4434589999997

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.40  E-value=1.1e-07  Score=64.48  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  122 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++++|++.++.+..
T Consensus         6 ~LLeiL~CP~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL~~Ea   52 (67)
T 2jny_A            6 QLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDEA   52 (67)
T ss_dssp             GGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHHhCCCCCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeChhHh
Confidence            4578999999999998753         4578999999999999999999997643

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.40  E-value=2.3e-07  Score=84.84  Aligned_cols=79  Identities=16%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------------CCCCEEEEEecCCCCCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF------------PKENFLLVRADISRLPF  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~------------~~~~i~~~~~d~~~lp~  244 (288)
                      ++.+|||+|||+|.++..+++..+..+|+++|+++.+++.++++++.....            ...++.++++|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            478999999999999999999854468999999999999999999875100            02348999999876421


Q ss_pred             -CCCccceEEec
Q 023019          245 -ASSSIDAVHAG  255 (288)
Q Consensus       245 -~~~sfD~V~~~  255 (288)
                       ..+.||+|+..
T Consensus       127 ~~~~~fD~I~lD  138 (378)
T 2dul_A          127 ERHRYFHFIDLD  138 (378)
T ss_dssp             HSTTCEEEEEEC
T ss_pred             hccCCCCEEEeC
Confidence             13579999963

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.38  E-value=1.4e-07  Score=64.28  Aligned_cols=46  Identities=17%  Similarity=0.183  Sum_probs=39.8

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++++|++.++.+.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2jr6_A            4 KFLDILVCPVTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGIPYMLENE   49 (68)
T ss_dssp             SSSCCCBCSSSCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCTTT
T ss_pred             HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            4578999999999998753         458899999999999999999998763

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.36  E-value=7.2e-07  Score=77.69  Aligned_cols=93  Identities=19%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---  243 (288)
                      +.+++.+...+++.+||.+||.|..+..+++++  ++|+|+|.++.+++.|++ +..      .++.++++++.+++   
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L   82 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHL   82 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHH
Confidence            556677777789999999999999999999983  599999999999999998 532      48999999998764   


Q ss_pred             --CCCCccceEEecc--ccccCCCccccc
Q 023019          244 --FASSSIDAVHAGA--AIHCWSSPSTGV  268 (288)
Q Consensus       244 --~~~~sfD~V~~~~--vl~h~~d~~~~l  268 (288)
                        ...+++|.|++..  .-.++.++++-+
T Consensus        83 ~~~g~~~vDgIL~DLGvSS~Qld~~~RGF  111 (285)
T 1wg8_A           83 AALGVERVDGILADLGVSSFHLDDPSRGF  111 (285)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHCGGGCC
T ss_pred             HHcCCCCcCEEEeCCccccccccccccCc
Confidence              1235799999743  334455555544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.35  E-value=1.3e-06  Score=84.44  Aligned_cols=74  Identities=12%  Similarity=0.000  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      .+..|||||||+|.+.....+.+    ...+|++||-|+ |+..|++..+.+  .....|+++.+|++++..+ +++|+|
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N--~~~dkVtVI~gd~eev~LP-EKVDII  432 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE--EWGSQVTVVSSDMREWVAP-EKADII  432 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH--TTGGGEEEEESCTTTCCCS-SCEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc--cCCCeEEEEeCcceeccCC-cccCEE
Confidence            34679999999999855444432    223789999997 777888877665  3467899999999998765 689999


Q ss_pred             Ee
Q 023019          253 HA  254 (288)
Q Consensus       253 ~~  254 (288)
                      ++
T Consensus       433 VS  434 (637)
T 4gqb_A          433 VS  434 (637)
T ss_dssp             EC
T ss_pred             EE
Confidence            98

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.35  E-value=1.6e-07  Score=64.14  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++++|++.++.+.
T Consensus         4 ~LLeiL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~e   49 (69)
T 2pk7_A            4 KLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   49 (69)
T ss_dssp             CGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHHhheeCCCCCCcCeEeC---------CCCEEEcCCCCcEecCcCCeeeeChhh
Confidence            3478899999999998753         357899999999999999999998763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.34  E-value=1.1e-06  Score=84.17  Aligned_cols=116  Identities=20%  Similarity=0.099  Sum_probs=84.7

Q ss_pred             CcchhhhhHHHHhhhhh-----cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-------------
Q 023019          139 MPFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------  200 (288)
Q Consensus       139 ~~~~s~~~~~~wr~~~~-----~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-------------  200 (288)
                      ...+...|+...++...     .+.|++|....+.+.+.+.+.++ +|||.+||+|.++..+.+...             
T Consensus       202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~  280 (544)
T 3khk_A          202 KDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQ  280 (544)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHH
Confidence            35666677765554321     23588999999999999887655 999999999999887754310             


Q ss_pred             --CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccceEEeccc
Q 023019          201 --FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGAA  257 (288)
Q Consensus       201 --~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~V~~~~v  257 (288)
                        ...++|+|+++.+++.|+.++... |. ..++.+.++|....+ +.+..||+|+++=-
T Consensus       281 ~~~~~i~G~Eid~~~~~lA~~Nl~l~-gi-~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPP  338 (544)
T 3khk_A          281 KKQISVYGQESNPTTWKLAAMNMVIR-GI-DFNFGKKNADSFLDDQHPDLRADFVMTNPP  338 (544)
T ss_dssp             GGGEEEEECCCCHHHHHHHHHHHHHT-TC-CCBCCSSSCCTTTSCSCTTCCEEEEEECCC
T ss_pred             hhhceEEEEeCCHHHHHHHHHHHHHh-CC-CcccceeccchhcCcccccccccEEEECCC
Confidence              248999999999999999998776 22 223444778876544 45678999999643

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.34  E-value=1.5e-07  Score=64.48  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=40.3

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  122 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++++|++.++.+..
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (70)
T 2js4_A            4 RLLDILVCPVCKGRLEFQR---------AQAELVCNADRLAFPVRDGVPIMLEAEA   50 (70)
T ss_dssp             CCCCCCBCTTTCCBEEEET---------TTTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred             HHhhheECCCCCCcCEEeC---------CCCEEEcCCCCceecCCCCeeeeChhhc
Confidence            3578999999999998753         3578999999999999999999998643

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.33  E-value=1.3e-07  Score=64.38  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=39.6

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++++|++.++.+.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2hf1_A            4 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   49 (68)
T ss_dssp             CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            3468899999999998753         358899999999999999999999763

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.25  E-value=1e-06  Score=80.88  Aligned_cols=79  Identities=15%  Similarity=0.038  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCC-EEEEEecCCCCC--CCCCccce
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP--FASSSIDA  251 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~-i~~~~~d~~~lp--~~~~sfD~  251 (288)
                      .++.+|||++||+|.++..++.+..+ .+|+++|+++.+++.++++++.. | ...+ +.++.+|+.++.  ...+.||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-g-l~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-N-IPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-T-CCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-C-CCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            35789999999999999999986322 58999999999999999999987 2 1233 899999986531  12457999


Q ss_pred             EEecc
Q 023019          252 VHAGA  256 (288)
Q Consensus       252 V~~~~  256 (288)
                      |++.-
T Consensus       129 V~lDP  133 (392)
T 3axs_A          129 VDLDP  133 (392)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99854

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.15  E-value=6.6e-06  Score=72.62  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.++.... .++..|||++||+|..+..+++.+.  +++|+|+++.+++.|++++...
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            34555677776665 5688999999999999999999886  9999999999999999998775

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.13  E-value=9.5e-07  Score=57.75  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=38.3

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecC--CCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....           +.+.|+  .|+..|++++|++.++.++
T Consensus         6 ~lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            6 GLLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             SCTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            4578999999999987642           789999  9999999999999998754

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.12  E-value=1.1e-05  Score=67.19  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCCCEEEEEecCCCC-------------
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-PKENFLLVRADISRL-------------  242 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-~~~~i~~~~~d~~~l-------------  242 (288)
                      +..+||||||  |+-+..+++. ++++|+.+|.++...+.|+++++.. |. ...++.++.+|+.+.             
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~-g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN-PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS-CCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCCceEEEEeCchhhhcccccccchhhh
Confidence            3679999998  4666777764 2469999999999999999999886 21 046899999997642             


Q ss_pred             --C--------C-CCCccceEEeccc
Q 023019          243 --P--------F-ASSSIDAVHAGAA  257 (288)
Q Consensus       243 --p--------~-~~~sfD~V~~~~v  257 (288)
                        +        . ..++||+|+.-.-
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCC
Confidence              2        1 2378999998664

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.07  E-value=6.4e-06  Score=74.46  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .+|.++||+||++|.++..+.+++.  .|++||+.+ |......         ..++.++++|+.....+.+.||+|+|-
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~~---------~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLMD---------TGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHHT---------TTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhcc---------CCCeEEEeCccccccCCCCCcCEEEEc
Confidence            4599999999999999999999986  999999875 3222221         478999999999887777899999996


Q ss_pred             ccc
Q 023019          256 AAI  258 (288)
Q Consensus       256 ~vl  258 (288)
                      .+.
T Consensus       278 m~~  280 (375)
T 4auk_A          278 MVE  280 (375)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.06  E-value=5.1e-06  Score=65.08  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             CCeEEEEcCccc-hHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC-CccceEEe
Q 023019          178 GGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-SSIDAVHA  254 (288)
Q Consensus       178 ~~~VLDiGcG~G-~~~~~l~~-~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~-~sfD~V~~  254 (288)
                      +.+|||||||.| ..+..|++ .+.  .|+++|+++..+                  .+++.|+.+..+.. ..||+|.+
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~~~~Y~~~DLIYs   95 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPRMEIYRGAALIYS   95 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCCHHHHTTEEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCcccccCCcCEEEE
Confidence            679999999999 59999997 676  999999988421                  17888888743321 47999988


Q ss_pred             ccc
Q 023019          255 GAA  257 (288)
Q Consensus       255 ~~v  257 (288)
                      ..-
T Consensus        96 irP   98 (153)
T 2k4m_A           96 IRP   98 (153)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.00  E-value=2.9e-05  Score=70.84  Aligned_cols=83  Identities=16%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             CCeEEEEcCccchHHHHHHHh-----------------CCCCEEEEEeCC-----------HHHHHHHHHHHHhcCCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS-----------ENMLKQCYEFVQQESNFPK  229 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s-----------~~~l~~A~~~~~~~~g~~~  229 (288)
                      ..+|+|+||++|.++..+...                 .+..+|+.-|+-           +.+.+.+++.   . | ..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~-g-~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---N-G-RK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---T-C-CC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---c-c-CC
Confidence            468999999999998877665                 244688999988           5555443332   1 1 01


Q ss_pred             CCEEEEEecCCC---CCCCCCccceEEeccccccCCCcc
Q 023019          230 ENFLLVRADISR---LPFASSSIDAVHAGAAIHCWSSPS  265 (288)
Q Consensus       230 ~~i~~~~~d~~~---lp~~~~sfD~V~~~~vl~h~~d~~  265 (288)
                      .+..|+.+....   -.|+++++|+|+++.+|||+.+..
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p  166 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVP  166 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSC
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCc
Confidence            234566665543   568899999999999999987653

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=97.99  E-value=2.9e-06  Score=61.55  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=41.7

Q ss_pred             ccCCceeCCCCCCCCcccCC------------------CCCccccccCCceecCCCCcccccCCCeeeeecc
Q 023019           67 TSKNVLACPICYKPLTWIGD------------------SSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~------------------~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~  120 (288)
                      .-+++|+||.|+++|.....                  .+...+.+..+.|.|+.|+..|++++|++.++.+
T Consensus         4 ~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~   75 (97)
T 2k5r_A            4 KLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE   75 (97)
T ss_dssp             TTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred             HHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence            35789999999998876431                  1112334456789999999999999999999876

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.99  E-value=1.4e-05  Score=77.67  Aligned_cols=75  Identities=16%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccchHHHHHHHh----C---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKS----G---------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~----~---------~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      +..|||||||+|.++....+.    +         ...+|++||.|+.+....+.+...   .....|+++.+|++++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N---g~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR---TWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH---TTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc---CCCCeEEEEeCchhhccc
Confidence            568999999999996433222    2         224999999999777666655442   235679999999998866


Q ss_pred             C-----CCccceEEec
Q 023019          245 A-----SSSIDAVHAG  255 (288)
Q Consensus       245 ~-----~~sfD~V~~~  255 (288)
                      +     .+++|+|++-
T Consensus       487 p~~~~~~ekVDIIVSE  502 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSE  502 (745)
T ss_dssp             HHHHTTCCCCSEEEEC
T ss_pred             ccccCCCCcccEEEEe
Confidence            3     5789999983

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.91  E-value=5e-05  Score=72.39  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=85.2

Q ss_pred             cchhhhhHHHHhhhh----hcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC----C---------CC
Q 023019          140 PFMSFIYERGWRQNF----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----L---------FS  202 (288)
Q Consensus       140 ~~~s~~~~~~wr~~~----~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~----~---------~~  202 (288)
                      +.++..|+...++..    -.+.|++|....+.+.+.+.+.++.+|+|-+||+|.++..+.+..    .         ..
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            355666776665432    123489999999999999998889999999999999987765531    1         13


Q ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC----CCccceEEecccc
Q 023019          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA----SSSIDAVHAGAAI  258 (288)
Q Consensus       203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~----~~sfD~V~~~~vl  258 (288)
                      .++|.|+++.+...|+-++-.. |  .....+..+|....|..    ...||+|+++=-+
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lh-g--~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLH-G--LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHH-T--CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred             hhhhhhccHHHHHHHHHHHHhc-C--CccccccccccccCchhhhcccccceEEEecCCC
Confidence            6999999999999999887766 2  23345677887665532    3479999996433

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.87  E-value=1.2e-05  Score=69.66  Aligned_cols=108  Identities=15%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      ....++.+|||+|||+|.++..+++..+-..+.|+|++..+....... ...    ..++..+..++....+.++.||+|
T Consensus        70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~~~~DlV  144 (277)
T 3evf_A           70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSL----GWNIITFKDKTDIHRLEPVKCDTL  144 (277)
T ss_dssp             TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBT----TGGGEEEECSCCTTTSCCCCCSEE
T ss_pred             CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcC----CCCeEEEeccceehhcCCCCccEE
Confidence            344567899999999999999988764434788888875431100000 000    115556677776667778899999


Q ss_pred             Eeccccc----cCCCcc---------ccc----ceEEEEecC--cccHHHHH
Q 023019          253 HAGAAIH----CWSSPS---------TGV----GVFFQVTLI--IHVVEDLA  285 (288)
Q Consensus       253 ~~~~vl~----h~~d~~---------~~l----G~lvi~t~~--~~~l~el~  285 (288)
                      ++..+.+    .+....         ..|    |.|++..|.  .....++.
T Consensus       145 lsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~  196 (277)
T 3evf_A          145 LCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKL  196 (277)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred             EecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHH
Confidence            9977554    111111         111    799999988  44444443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.86  E-value=2.3e-05  Score=77.22  Aligned_cols=102  Identities=15%  Similarity=0.031  Sum_probs=68.2

Q ss_pred             CCCCCcHHHHHHHHhh----cCC--CCCCeEEEEcCccchHHHHHHHhCC---CCEEEEEeCCHHHHHHH--HHHHHhcC
Q 023019          157 GGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQC--YEFVQQES  225 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~----l~~--~~~~~VLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~l~~A--~~~~~~~~  225 (288)
                      +.++.|....+.+...    +..  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|  +.++....
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4477888777776665    332  3578999999999999999988753   35799999999999999  44433210


Q ss_pred             -CCCCCCEEEEEecCCCC-CCCCCccceEEecccc
Q 023019          226 -NFPKENFLLVRADISRL-PFASSSIDAVHAGAAI  258 (288)
Q Consensus       226 -g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~~vl  258 (288)
                       ........+...|+... +...+.||+|+++=-.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPY  409 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPY  409 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBC
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCc
Confidence             00012234455555543 2345789999996443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.77  E-value=0.00015  Score=63.59  Aligned_cols=80  Identities=13%  Similarity=0.266  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-C-CCCCCEEEEEecCCCC-CCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N-FPKENFLLVRADISRL-PFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g-~~~~~i~~~~~d~~~l-p~~~~sfD~V~  253 (288)
                      ...+||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+.... + ...+++.++.+|+... .-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            4679999999999999999987655799999999999999999875320 1 1357899999999864 44567899999


Q ss_pred             ecc
Q 023019          254 AGA  256 (288)
Q Consensus       254 ~~~  256 (288)
                      .-.
T Consensus       163 ~D~  165 (294)
T 3o4f_A          163 SDC  165 (294)
T ss_dssp             ESC
T ss_pred             EeC
Confidence            753

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.71  E-value=0.00013  Score=66.25  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=56.8

Q ss_pred             CCeEEEEcCccchHHHHHHH--------hC-------CCCEEEEEeCCHHHHHHHHHHHHhcCC---------CCCCCEE
Q 023019          178 GGNIIDASCGSGLFSRIFAK--------SG-------LFSLVVALDYSENMLKQCYEFVQQESN---------FPKENFL  233 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~l~~A~~~~~~~~g---------~~~~~i~  233 (288)
                      ..+|+|+|||+|.++..+..        ..       +..+|+.-|+-.+.-...-+.+.....         ....+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999998887722        21       457888999888765444444332100         0000112


Q ss_pred             EEE---ecCCCCCCCCCccceEEeccccccCCCcc
Q 023019          234 LVR---ADISRLPFASSSIDAVHAGAAIHCWSSPS  265 (288)
Q Consensus       234 ~~~---~d~~~lp~~~~sfD~V~~~~vl~h~~d~~  265 (288)
                      ++.   +.+..-.|++++||+|+++.+|||+.+..
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p  167 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP  167 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCC
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCc
Confidence            333   33334568899999999999999987543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.70  E-value=3.5e-05  Score=68.63  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=74.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      +.+++.|...+++.++|..+|.|..+..+++. ++.++|+|+|.++.+++.|+ ++  .    ..++.++++++.++.  
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~----~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D----DPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C----CTTEEEEESCGGGHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c----CCcEEEEeCCHHHHHHH
Confidence            56677788888999999999999999999987 56789999999999999984 43  2    468999999988763  


Q ss_pred             ---CC-CCccceEEeccccc--cCCCccccc
Q 023019          244 ---FA-SSSIDAVHAGAAIH--CWSSPSTGV  268 (288)
Q Consensus       244 ---~~-~~sfD~V~~~~vl~--h~~d~~~~l  268 (288)
                         .. .+++|.|+....+.  ++.++++-+
T Consensus       120 L~~~g~~~~vDgILfDLGVSS~QlD~~eRGF  150 (347)
T 3tka_A          120 VAERDLIGKIDGILLDLGVSSPQLDDAERGF  150 (347)
T ss_dssp             HHHTTCTTCEEEEEEECSCCHHHHHCGGGCC
T ss_pred             HHhcCCCCcccEEEECCccCHHHhcCCCCCC
Confidence               11 13699999876554  556666654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.59  E-value=2.3e-05  Score=67.93  Aligned_cols=81  Identities=14%  Similarity=0.063  Sum_probs=52.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ...++.+|||+|||+|.|+..+++..+-..|+|+|++..+...+... ...    ..++.....+.....+....+|+|+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~~~~DvVL  161 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL----GWNLIRFKDKTDVFNMEVIPGDTLL  161 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC----CCceEEeeCCcchhhcCCCCcCEEE
Confidence            45678899999999999999988764445799999987542222110 000    1233344444333345678899999


Q ss_pred             eccccc
Q 023019          254 AGAAIH  259 (288)
Q Consensus       254 ~~~vl~  259 (288)
                      +..+..
T Consensus       162 SDmApn  167 (282)
T 3gcz_A          162 CDIGES  167 (282)
T ss_dssp             ECCCCC
T ss_pred             ecCccC
Confidence            977655

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.48  E-value=0.00032  Score=60.52  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.+++... .++..|||..||+|..+..+.+.+.  +++|+|+++.+++.|++++...
T Consensus       197 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence            34556667766654 5688999999999999999999886  9999999999999999998764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.46  E-value=7.6e-05  Score=67.47  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccchHHHHHHHh----------------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC--
Q 023019          178 GGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--  239 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~----------------~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~--  239 (288)
                      .-+|+|+||++|.++..+...                .|..+|+..|+..++....-+.+....  ...+..|+.+..  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchh
Confidence            467999999999876654433                344689999999998888877654320  001334555443  


Q ss_pred             -CCCCCCCCccceEEeccccccCCC
Q 023019          240 -SRLPFASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       240 -~~lp~~~~sfD~V~~~~vl~h~~d  263 (288)
                       -...|+++++|+|+++.+|||+.+
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~  154 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred             hhhccCCCCceEEEEehhhhhhccc
Confidence             346789999999999999999876

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.43  E-value=0.00033  Score=63.18  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             HHHHHHHhhcCCC------CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023019          164 KEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (288)
Q Consensus       164 ~~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~  237 (288)
                      ...+.+.+.+...      ++..|||||.|.|.++..|.+.....+|+++|+++.++...++.+ .     ..++.++.+
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~  112 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKR  112 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECS
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEEC
Confidence            3346666666543      358899999999999999998732248999999999999998875 2     368999999


Q ss_pred             cCCCC
Q 023019          238 DISRL  242 (288)
Q Consensus       238 d~~~l  242 (288)
                      |+..+
T Consensus       113 D~l~~  117 (353)
T 1i4w_A          113 DPYDW  117 (353)
T ss_dssp             CTTCH
T ss_pred             Cccch
Confidence            99654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.34  E-value=0.00034  Score=63.24  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCCCEEEEEecCCCCC-
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF----PKENFLLVRADISRLP-  243 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~----~~~~i~~~~~d~~~lp-  243 (288)
                      ....+.+.+|.+|||+.+|.|.=+..+++.+....|+++|+++.-++..+++++.. +.    ...++.+...|+..++ 
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~-~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSY-VPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHH-SCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHh-hhhhhccCCceEEEeCchhhcch
Confidence            34566788899999999999999988888877678999999999999999998765 21    1247888888887664 


Q ss_pred             CCCCccceEEe
Q 023019          244 FASSSIDAVHA  254 (288)
Q Consensus       244 ~~~~sfD~V~~  254 (288)
                      ...+.||.|+.
T Consensus       219 ~~~~~fD~VLl  229 (359)
T 4fzv_A          219 LEGDTYDRVLV  229 (359)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccccCCEEEE
Confidence            34578999997

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.31  E-value=0.00021  Score=61.61  Aligned_cols=80  Identities=13%  Similarity=0.008  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-------CCC-----CEEEEEeCCH---HHHH-----------HHHHHHHhcC----
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLK-----------QCYEFVQQES----  225 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~-------~~~-----~~v~gvD~s~---~~l~-----------~A~~~~~~~~----  225 (288)
                      .++.+|||||+|+|..+..+.+.       .+.     .+++++|..+   ++++           .|++.++.+.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34679999999999988776553       442     4899999876   5444           5566655410    


Q ss_pred             -------CCCCCCEEEEEecCCC-CCCCC----CccceEEec
Q 023019          226 -------NFPKENFLLVRADISR-LPFAS----SSIDAVHAG  255 (288)
Q Consensus       226 -------g~~~~~i~~~~~d~~~-lp~~~----~sfD~V~~~  255 (288)
                             .....+++++.+|+.+ ++.-+    ..||+|+..
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD  180 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD  180 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC
Confidence                   0012467899999876 44322    279999984

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.25  E-value=0.00067  Score=57.22  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCCCCCCCccceE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSIDAV  252 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~sfD~V  252 (288)
                      ...++.+|||+||++|.++.+++.......|+|+|+-..--+.-+ ..+.   ..+..++|..+ |+..++-  ..+|.|
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s---~gwn~v~fk~gvDv~~~~~--~~~Dtl  148 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMST---YGWNIVKLMSGKDVFYLPP--EKCDTL  148 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCC---TTTTSEEEECSCCGGGCCC--CCCSEE
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhh---cCcCceEEEeccceeecCC--ccccEE
Confidence            456788999999999999998877744358999999653110000 0000   11467899999 8766653  669999


Q ss_pred             EeccccccCCCcc----c---c-------c--ceEEEEecCccc
Q 023019          253 HAGAAIHCWSSPS----T---G-------V--GVFFQVTLIIHV  280 (288)
Q Consensus       253 ~~~~vl~h~~d~~----~---~-------l--G~lvi~t~~~~~  280 (288)
                      +|.-.= --+++.    +   +       |  |-|++-.+.+..
T Consensus       149 lcDIge-Ss~~~~vE~~RtlrvLela~~wL~~~~fc~KVl~py~  191 (267)
T 3p8z_A          149 LCDIGE-SSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLNPYM  191 (267)
T ss_dssp             EECCCC-CCSCHHHHHHHHHHHHHHHGGGCSSCEEEEEESCCCS
T ss_pred             EEecCC-CCCChhhhhhHHHHHHHHHHHhcccCCEEEEEccCCC
Confidence            995433 111110    1   1       1  888888887766

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.20  E-value=0.001  Score=57.91  Aligned_cols=104  Identities=16%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~  246 (288)
                      .+.+.....++.+|||+||++|.++.+++....-..|+|+|+-..--+.-+ ..++.   .+..+.+..+ |+..++.  
T Consensus        85 ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql---~w~lV~~~~~~Dv~~l~~--  158 (321)
T 3lkz_A           85 WLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSY---GWNIVTMKSGVDVFYRPS--  158 (321)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBT---TGGGEEEECSCCTTSSCC--
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhc---CCcceEEEeccCHhhCCC--
Confidence            333334456788999999999999998777643358999999663100000 00000   1234778887 8877764  


Q ss_pred             CccceEEeccccccCCCcc----c---cc-----------ceEEEEecCc
Q 023019          247 SSIDAVHAGAAIHCWSSPS----T---GV-----------GVFFQVTLII  278 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~----~---~l-----------G~lvi~t~~~  278 (288)
                      ..+|+|+|.-. +--+++.    +   +|           |-|++-.+.+
T Consensus       159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            56999999766 5444432    1   11           6888888877

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.02  E-value=0.00098  Score=58.20  Aligned_cols=81  Identities=9%  Similarity=0.051  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSEN--------------------------MLKQCYEFVQQE  224 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~--------------------------~l~~A~~~~~~~  224 (288)
                      ...+.|||+|+..|..+..+++..     ++.+++++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346799999999999888776542     3568999996421                          467788888887


Q ss_pred             CCCCCCCEEEEEecCCC-CC-CCCCccceEEeccc
Q 023019          225 SNFPKENFLLVRADISR-LP-FASSSIDAVHAGAA  257 (288)
Q Consensus       225 ~g~~~~~i~~~~~d~~~-lp-~~~~sfD~V~~~~v  257 (288)
                       |....++.++.+|+.+ +| +++++||+|+.-.-
T Consensus       185 -gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          185 -DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             -TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             -CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence             3324789999999864 33 34578999998653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.71  E-value=0.0014  Score=59.39  Aligned_cols=78  Identities=12%  Similarity=0.198  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCCCEEEEEecCCCC----CCCCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----PKENFLLVRADISRL----PFASS  247 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-----~~~~i~~~~~d~~~l----p~~~~  247 (288)
                      +.++||-||.|.|..++++.+... .+|+.+|+++.+++.|++.+....+.     ..+++.++.+|+...    .-..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            467999999999999999998754 79999999999999999986432100     024588999997542    12346


Q ss_pred             ccceEEec
Q 023019          248 SIDAVHAG  255 (288)
Q Consensus       248 sfD~V~~~  255 (288)
                      +||+|+.-
T Consensus       284 ~yDvIIvD  291 (381)
T 3c6k_A          284 EFDYVIND  291 (381)
T ss_dssp             CEEEEEEE
T ss_pred             ceeEEEEC
Confidence            79999985

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.58  E-value=0.0012  Score=57.53  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++.+|||+||++|.|+..+.+...-..|+|+|+...+....... ...    ..++.....+.....+..+.+|+|++.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~-~~~----~~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHM-QTL----GWNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccc-ccc----CCceEEeecCceeeecCCCCcCEEeec
Confidence            468899999999999999999864335789999976431110000 000    112223333333334456789999996


Q ss_pred             cccccCCCc--c------------ccc----ceEEEEecC--cccHHHHH
Q 023019          256 AAIHCWSSP--S------------TGV----GVFFQVTLI--IHVVEDLA  285 (288)
Q Consensus       256 ~vl~h~~d~--~------------~~l----G~lvi~t~~--~~~l~el~  285 (288)
                      .+.. ....  +            ..|    |.|++-.|.  .....+|.
T Consensus       155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll  203 (300)
T 3eld_A          155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKL  203 (300)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHH
T ss_pred             CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHH
Confidence            6544 2221  0            111    688888888  55544443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.31  E-value=0.0019  Score=55.23  Aligned_cols=94  Identities=16%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC-CCE---EEEEe-cCCCCCCCCCc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-ENF---LLVRA-DISRLPFASSS  248 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~-~~i---~~~~~-d~~~lp~~~~s  248 (288)
                      -..++.+|||+||+.|.|+.++++.-.-..|.|.++.... .     +...  .+. .++   .+.++ |+.+++  ...
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~--~~~~~Gv~~i~~~~G~Df~~~~--~~~  139 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPM--LMQSYGWNIVTMKSGVDVFYKP--SEI  139 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCC--CCCSTTGGGEEEECSCCGGGSC--CCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCC--cccCCCceEEEeeccCCccCCC--CCC
Confidence            3456999999999999999999987211133444433210 0     0000  000 233   44446 887753  457


Q ss_pred             cceEEeccccccCCCc----cc---cc----------c-eEEEEecCc
Q 023019          249 IDAVHAGAAIHCWSSP----ST---GV----------G-VFFQVTLII  278 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~----~~---~l----------G-~lvi~t~~~  278 (288)
                      +|+|+|-.+-. -..+    .+   +|          | .|++-.|.+
T Consensus       140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            99999965432 1110    10   22          7 899999985

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.85  E-value=0.02  Score=52.46  Aligned_cols=49  Identities=10%  Similarity=0.021  Sum_probs=42.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHH-HhCC-CCEEEEEeCCHHHHHHHHHHHHh
Q 023019          175 PVLGGNIIDASCGSGLFSRIFA-KSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~-~~~~-~~~v~gvD~s~~~l~~A~~~~~~  223 (288)
                      ..++..|+|||++.|.++..++ +.++ ..+|+++|+++...+..+++++.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            4678999999999999999888 4554 36999999999999999999876

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=95.81  E-value=0.0048  Score=38.98  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=24.5

Q ss_pred             CceeCCCCCC-CCcccCCCCCccccccCCceecCCCCccccc
Q 023019           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        70 ~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ..+.||.|++ +|....         ..+.+.|..||..+..
T Consensus         4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~e   36 (50)
T 1pft_A            4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCCC
T ss_pred             ccEeCcCCCCcceEEcC---------CCCeEECcccCCcccc
Confidence            4578999999 776532         3578999999987764

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.80  E-value=0.021  Score=51.79  Aligned_cols=70  Identities=24%  Similarity=0.272  Sum_probs=55.7

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC--------CCCccc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------ASSSID  250 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~--------~~~sfD  250 (288)
                      .++||+-||.|.++..+.+.|. ..+.++|+++..++..+.+        ..+..++.+|+.++..        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N--------~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAIN--------FPRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHH--------CTTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHh--------CCCCceEecChhhcCHHHHHhhcccCCCee
Confidence            4799999999999999999986 3567999999998888876        3456678889887642        246799


Q ss_pred             eEEeccc
Q 023019          251 AVHAGAA  257 (288)
Q Consensus       251 ~V~~~~v  257 (288)
                      +|+..--
T Consensus        74 ~i~ggpP   80 (376)
T 3g7u_A           74 GIIGGPP   80 (376)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.72  E-value=0.016  Score=51.36  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=51.0

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.+++... .++..|||.-||+|..+....+.+.  +.+|+|+++..++.+++++...
T Consensus       237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence            34555666666553 4689999999999999999999886  9999999999999999987665

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.58  E-value=0.0095  Score=53.36  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---CCCccceEE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVH  253 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~sfD~V~  253 (288)
                      ..+|||+-||.|.+...+.+.|.. ..|+++|+++.+++..+.+.        ....++.+|+.++..   +...+|+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEE
Confidence            357999999999999999998831 36899999999999998873        333467788887642   112589998


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      ...-
T Consensus        74 ~gpP   77 (343)
T 1g55_A           74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8644

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.54  E-value=0.028  Score=49.81  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH---HHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~---~~l~~A~~~~~~~  224 (288)
                      -|....+.++.... .++..|||.-||+|..+....+.+.  +.+|+|+++   ..++.+++++...
T Consensus       227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence            45556677776654 4689999999999999999999886  999999999   9999999997655

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.37  E-value=0.093  Score=45.73  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             HHHHhhcC-----CCCCCeEEEEcC------ccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEE
Q 023019          167 ELMKGYLK-----PVLGGNIIDASC------GSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLL  234 (288)
Q Consensus       167 ~~l~~~l~-----~~~~~~VLDiGc------G~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~  234 (288)
                      ..+.+++.     ...+.+|||+|+      ..|.  ..+.+.++. +.|+++|+.+-.              .... .+
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~--------------sda~-~~  156 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV--------------SDAD-ST  156 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB--------------CSSS-EE
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc--------------cCCC-eE
Confidence            44455543     346899999997      5566  344555664 499999998721              1123 45


Q ss_pred             EEecCCCCCCCCCccceEEecccc---ccCCCccc--c--c---------------ceEEEEecCcccHHHH
Q 023019          235 VRADISRLPFASSSIDAVHAGAAI---HCWSSPST--G--V---------------GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       235 ~~~d~~~lp~~~~sfD~V~~~~vl---~h~~d~~~--~--l---------------G~lvi~t~~~~~l~el  284 (288)
                      +++|...+.. .+.||+|++-..-   -+. |.++  .  |               |.|++-.|......+|
T Consensus       157 IqGD~~~~~~-~~k~DLVISDMAPNtTG~~-D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L  226 (344)
T 3r24_A          157 LIGDCATVHT-ANKWDLIISDMYDPRTKHV-TKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADL  226 (344)
T ss_dssp             EESCGGGEEE-SSCEEEEEECCCCTTSCSS-CSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHH
T ss_pred             EEcccccccc-CCCCCEEEecCCCCcCCcc-ccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHH
Confidence            9999765433 4789999995432   122 2222  1  1               9999999876554433

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.39  E-value=0.081  Score=46.96  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=53.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEecc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~  256 (288)
                      +.++||+.||.|.+...+.+.|. ..+.++|+++..++..+.+....     .     .+|+.++... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~-----~-----~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK-----P-----EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC-----C-----BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC-----C-----cCCHHHcCHhhCCCCCEEEECC
Confidence            57899999999999999999886 46889999999999888875332     1     5777765321 13589999864


Q ss_pred             cc
Q 023019          257 AI  258 (288)
Q Consensus       257 vl  258 (288)
                      --
T Consensus        80 PC   81 (327)
T 2c7p_A           80 PC   81 (327)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.38  E-value=0.01  Score=66.13  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCcc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSI  249 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-----~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sf  249 (288)
                      .+..+|||||.|+|..+..+.+...     ..+++..|+|+...+.|+++++..      .+....-|.... ++...+|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence            3467999999999986655544321     247999999999888888876543      222211233332 4456789


Q ss_pred             ceEEeccccccCCCccccc----------ceEEEEe
Q 023019          250 DAVHAGAAIHCWSSPSTGV----------GVFFQVT  275 (288)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l----------G~lvi~t  275 (288)
                      |+|++.+++|-.++....+          |.+++..
T Consensus      1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             CEEEEECC--------------------CCEEEEEE
T ss_pred             eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999998766666555          7776654

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.96  E-value=0.15  Score=45.31  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC------CC------------CCCCE
Q 023019          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF------------PKENF  232 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~------g~------------~~~~i  232 (288)
                      +++...+...|+.+|||.......+...++...++-||. +.+++.-++.+...+      |.            ...+.
T Consensus        91 ~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (334)
T 1rjd_A           91 EFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY  169 (334)
T ss_dssp             HHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE
T ss_pred             HHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCce
Confidence            344323467899999999998888887655568888888 778777777765530      00            12678


Q ss_pred             EEEEecCCCCCC---------CCCccceEEeccccccCCC
Q 023019          233 LLVRADISRLPF---------ASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       233 ~~~~~d~~~lp~---------~~~sfD~V~~~~vl~h~~d  263 (288)
                      .++-+|+.+...         ......++++-.++.+++.
T Consensus       170 ~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~  209 (334)
T 1rjd_A          170 KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN  209 (334)
T ss_dssp             EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH
T ss_pred             EEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH
Confidence            899999987421         2345788899999998864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.96  E-value=0.089  Score=46.00  Aligned_cols=73  Identities=11%  Similarity=0.054  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC----CCccc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA----SSSID  250 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~----~~sfD  250 (288)
                      ....+++|+-||.|.+...+.+.|.... |.++|+++..++.-+.+        .....++.+|+.++...    .+.+|
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N--------~~~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR--------HQGKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH--------TTTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh--------CCCCceeCCChHHccHHHhcccCCcC
Confidence            3466899999999999999999886433 69999999988777665        23445788998876421    14689


Q ss_pred             eEEecc
Q 023019          251 AVHAGA  256 (288)
Q Consensus       251 ~V~~~~  256 (288)
                      +++...
T Consensus        86 ll~ggp   91 (295)
T 2qrv_A           86 LVIGGS   91 (295)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999864

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.64  E-value=0.31  Score=44.22  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD  250 (288)
                      .-.|+|+|.|+|.++..+.+..       ...+++-||+|+...+.=++++...     .++.|. .++.++|-  + .-
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp~--~-~~  151 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE--G-PA  151 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC--S-SE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcCC--C-Ce
Confidence            4569999999999977665431       2248999999998877666554432     256665 34555652  2 45


Q ss_pred             eEEeccccccCCC
Q 023019          251 AVHAGAAIHCWSS  263 (288)
Q Consensus       251 ~V~~~~vl~h~~d  263 (288)
                      +|+++.+|.-+|-
T Consensus       152 ~viANE~fDAlPv  164 (387)
T 1zkd_A          152 VILANEYFDVLPI  164 (387)
T ss_dssp             EEEEESSGGGSCC
T ss_pred             EEEeccccccCce
Confidence            8889998877653

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=93.45  E-value=0.055  Score=35.18  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=24.2

Q ss_pred             cCCceeCCCCCC-CCcccCCCCCccccccCCceecCCCCcccc
Q 023019           68 SKNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        68 ~l~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      .+..+.||.|+. ++...         ...+.+.|..||..+.
T Consensus         8 ll~~~~Cp~C~~~~lv~D---------~~~ge~vC~~CGlVl~   41 (58)
T 1dl6_A            8 ALPRVTCPNHPDAILVED---------YRAGDMICPECGLVVG   41 (58)
T ss_dssp             CCSCCSBTTBSSSCCEEC---------SSSCCEECTTTCCEEC
T ss_pred             ccccccCcCCCCCceeEe---------CCCCeEEeCCCCCEEe
Confidence            355678999998 55442         2457899999998764

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=93.27  E-value=0.021  Score=43.16  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=24.0

Q ss_pred             ccCCceecCCCCcccccCCCeeeeecc
Q 023019           94 AAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (288)
Q Consensus        94 i~~~~l~C~~C~~~~~~~~g~~~~~~~  120 (288)
                      +.+|.+.|++||+.|++.+|+++++..
T Consensus        95 V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           95 VVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             EEEEEEECCCCCCEeeccCCcccHHHh
Confidence            567899999999999999999999753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.16  E-value=0.07  Score=46.25  Aligned_cols=94  Identities=7%  Similarity=-0.016  Sum_probs=68.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CC---CCCCccceEE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP---FASSSIDAVH  253 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp---~~~~sfD~V~  253 (288)
                      +..+||+=+|+|.++..+.+.+  .+++.+|.++..++..+++++.     ..++.++..|... +.   -+...||+|+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLVf  164 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLIF  164 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence            5568999999999999998855  4999999999999999887654     3678999999643 21   2335799999


Q ss_pred             eccccccCCCccccc------------ceEEEEecCc
Q 023019          254 AGAAIHCWSSPSTGV------------GVFFQVTLII  278 (288)
Q Consensus       254 ~~~vl~h~~d~~~~l------------G~lvi~t~~~  278 (288)
                      .-=-.+.-.+..+++            |.+++--+..
T Consensus       165 iDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~  201 (283)
T 2oo3_A          165 IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV  201 (283)
T ss_dssp             ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence            954444222222222            8888877653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.98  E-value=0.11  Score=46.11  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             CeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---CCCccceEEe
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA  254 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~sfD~V~~  254 (288)
                      .+++|+-||.|.+...+.+.|.. ..+.++|+++..++.-+.+.        ....++.+|+.++..   +...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEEe
Confidence            47999999999999999988742 35789999999888887763        333466788877642   2235899887


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus        76 gp   77 (333)
T 4h0n_A           76 SP   77 (333)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=92.97  E-value=0.11  Score=46.06  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCC-CEE-EEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---CCCccceE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLF-SLV-VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAV  252 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v-~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~sfD~V  252 (288)
                      ..+++|+-||.|.+...+.+.|.. ..+ .++|+++..++.-+.+...        . ++.+|+.++..   +...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            458999999999999999998742 356 7999999998888877422        1 56788887742   22358999


Q ss_pred             Eeccc
Q 023019          253 HAGAA  257 (288)
Q Consensus       253 ~~~~v  257 (288)
                      +...-
T Consensus        81 ~ggpP   85 (327)
T 3qv2_A           81 FMSPP   85 (327)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            87544

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=91.43  E-value=0.09  Score=33.05  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      .-.||.|+..+....         ..+.+.|..||..+-
T Consensus        19 ~k~CP~CG~~~fm~~---------~~~R~~C~kCG~t~~   48 (50)
T 3j20_Y           19 NKFCPRCGPGVFMAD---------HGDRWACGKCGYTEW   48 (50)
T ss_dssp             SEECSSSCSSCEEEE---------CSSEEECSSSCCEEE
T ss_pred             cccCCCCCCceEEec---------CCCeEECCCCCCEEE
Confidence            345999998654332         246899999987653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=91.43  E-value=0.37  Score=42.25  Aligned_cols=67  Identities=24%  Similarity=0.391  Sum_probs=51.9

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEecc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~  256 (288)
                      +|||+=||-|.+..-+.+.|. ..+.++|+++.+++.-+.+.         .-.++.+|+.++... -..+|+++...
T Consensus         2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecC
Confidence            699999999999999998886 35679999998888777652         235678999877532 24689888754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.42  E-value=0.83  Score=39.65  Aligned_cols=88  Identities=7%  Similarity=0.026  Sum_probs=54.5

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +.....++.+||-+|+|. |.++..+++. |.  +|++++ +++-++.+++.          ..+.+.-|..++   .+.
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g  199 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY--VVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQK  199 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC--EEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSC
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCC
Confidence            555667899999999974 7777777765 44  999999 99888888764          122222232233   467


Q ss_pred             cceEEeccccccCCCccccc---ceEEEE
Q 023019          249 IDAVHAGAAIHCWSSPSTGV---GVFFQV  274 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l---G~lvi~  274 (288)
                      +|+|+-.-.-..+....+.+   |+++..
T Consensus       200 ~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          200 YFAIFDAVNSQNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEEECC-------TTGGGEEEEEEEEEE
T ss_pred             ccEEEECCCchhHHHHHHHhcCCCEEEEE
Confidence            99998755444443333344   777665

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=90.44  E-value=0.062  Score=41.45  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             ccCCceecCCCCcccccCCCeeeeeccC
Q 023019           94 AAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        94 i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      +.++.|.|+.|++.|++++|+++++.+.
T Consensus       105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e  132 (141)
T 2j6a_A          105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP  132 (141)
T ss_dssp             EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred             ccCCEEECCCCCCcccccCCccCcCCcH
Confidence            4568899999999999999999998754

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=90.11  E-value=0.44  Score=44.48  Aligned_cols=73  Identities=19%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             HHHHHHHhhcCCC------CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023019          164 KEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (288)
Q Consensus       164 ~~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~  237 (288)
                      .++..+..++...      ..-+++|+-||.|.+..-+.+.|. ..|.++|+++..++.-+.+...     .+...++.+
T Consensus        68 ~~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~  141 (482)
T 3me5_A           68 KEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNE  141 (482)
T ss_dssp             HHHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEES
T ss_pred             HHHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceecc
Confidence            3456666665532      245799999999999999998876 3588999999888877776321     133456778


Q ss_pred             cCCCC
Q 023019          238 DISRL  242 (288)
Q Consensus       238 d~~~l  242 (288)
                      |+.++
T Consensus       142 DI~~i  146 (482)
T 3me5_A          142 DIRDI  146 (482)
T ss_dssp             CTHHH
T ss_pred             chhhh
Confidence            87654

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=90.02  E-value=0.1  Score=36.52  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=23.2

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ..+.||.|+..+...         ...+.|.|+.|+..+.
T Consensus        26 ~~y~Cp~CG~~~v~r---------~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDR---------QGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEE---------EETTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceec---------cCCCeEECCCCCCEec
Confidence            357899999966543         2457999999998654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.74  E-value=0.52  Score=43.31  Aligned_cols=79  Identities=11%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             CCeEEEEcCccchHHHHHHHh----CC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc-e
Q 023019          178 GGNIIDASCGSGLFSRIFAKS----GL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID-A  251 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~----~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD-~  251 (288)
                      ...|+|+|.|+|.+..-+.+.    .+ ..+++-||+|+.+.+.=++++.........++.|..    .+|  ++ +. +
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~lP--~~-~~g~  210 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----ALP--ER-FEGV  210 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----SCC--SC-EEEE
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----cCC--cc-CceE
Confidence            468999999999987666543    21 248999999999888777777653100123677643    244  22 44 8


Q ss_pred             EEeccccccCCC
Q 023019          252 VHAGAAIHCWSS  263 (288)
Q Consensus       252 V~~~~vl~h~~d  263 (288)
                      |+++.+|.-+|-
T Consensus       211 iiANE~fDAlPv  222 (432)
T 4f3n_A          211 VVGNEVLDAMPV  222 (432)
T ss_dssp             EEEESCGGGSCC
T ss_pred             EEeehhhccCce
Confidence            888888877753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=89.15  E-value=0.82  Score=40.34  Aligned_cols=90  Identities=16%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023019          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~  251 (288)
                      ....++.+||-+|+|. |.++..+++... .+|+++|.+++-++.+++.     |   ... .+ .+...+  . ..+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-----G---a~~-v~-~~~~~~--~-~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM-----G---VKH-FY-TDPKQC--K-EELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT-----T---CSE-EE-SSGGGC--C-SCEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc-----C---CCe-ec-CCHHHH--h-cCCCE
Confidence            3566799999999975 777777777632 4999999999988888763     1   111 12 332222  1 27999


Q ss_pred             EEeccccc-cCCCccccc---ceEEEEec
Q 023019          252 VHAGAAIH-CWSSPSTGV---GVFFQVTL  276 (288)
Q Consensus       252 V~~~~vl~-h~~d~~~~l---G~lvi~t~  276 (288)
                      |+-.-.-. .+....+.+   |++++...
T Consensus       238 vid~~g~~~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          238 IISTIPTHYDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             EEECCCSCCCHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence            98644322 222222333   77776544

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.13  E-value=0.04  Score=37.88  Aligned_cols=41  Identities=24%  Similarity=0.631  Sum_probs=23.2

Q ss_pred             CceeCCCCCCCCcccCCC----------------CCccccccCCceecCCCCccccc
Q 023019           70 NVLACPICYKPLTWIGDS----------------SLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~----------------~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ++..||+||.+|.+.+..                .......++-.+.|+.||..+..
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG   63 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence            567899999976553200                00011122346789999976643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=88.01  E-value=1.8  Score=38.39  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.....++.+||-+|+|. |.++..+++... .+|+++|.+++-++.+++.
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHc
Confidence            455667799999999875 777777776532 4999999999988888764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=87.25  E-value=2.2  Score=31.96  Aligned_cols=66  Identities=21%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccce
Q 023019          178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (288)
Q Consensus       178 ~~~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~  251 (288)
                      ..+|+=+|+|. |. +...|.+.+.  +|+++|.+++.++.+++.          .+.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE----------GFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT----------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC----------CCcEEECCCCCHHHHHhCCcccCCE
Confidence            45799999974 43 3445555566  899999999887777652          4567888887532    12346788


Q ss_pred             EEec
Q 023019          252 VHAG  255 (288)
Q Consensus       252 V~~~  255 (288)
                      |+..
T Consensus        74 vi~~   77 (141)
T 3llv_A           74 VLIT   77 (141)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=87.13  E-value=2.1  Score=37.93  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=36.1

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHH
Q 023019          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .+..++.+||-+|+|. |.++..+++. +.  +|+++|.++.-++.+++.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~~~~~~~l  222 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM  222 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHc
Confidence            4556789999999864 7777776664 54  899999999888888764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=86.34  E-value=2.5  Score=31.87  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=45.8

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccce
Q 023019          178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (288)
Q Consensus       178 ~~~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~  251 (288)
                      ..+|+=+|+|. |. +...|.+.+.  .|+++|.+++.++.+++          ..+.++.+|..+..    ..-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            45799999985 54 3445555566  89999999998887765          25667888886532    12246788


Q ss_pred             EEec
Q 023019          252 VHAG  255 (288)
Q Consensus       252 V~~~  255 (288)
                      |+..
T Consensus        75 vi~~   78 (140)
T 3fwz_A           75 LILT   78 (140)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7763

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=86.07  E-value=1.8  Score=38.47  Aligned_cols=50  Identities=24%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            445566799999999986 77777777753213799999999999988764

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=86.06  E-value=0.49  Score=30.26  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ...||.|+..+....         ..+.+.|..|+..+.
T Consensus        18 ~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~~   47 (55)
T 2k4x_A           18 HRFCPRCGPGVFLAE---------HADRYSCGRCGYTEF   47 (55)
T ss_dssp             SCCCTTTTTTCCCEE---------CSSEEECTTTCCCEE
T ss_pred             cccCcCCCCceeEec---------cCCEEECCCCCCEEE
Confidence            567999999654321         236899999987653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=85.28  E-value=2.7  Score=36.95  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             cCCCCCCeEEEEcCc--cchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----
Q 023019          173 LKPVLGGNIIDASCG--SGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (288)
Q Consensus       173 l~~~~~~~VLDiGcG--~G~~~~~l~~~--~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----  243 (288)
                      ....++.+||-+|+|  .|.....+++.  +.  +|+++|.+++.++.+++.     |   ... .+  |..+..     
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~~-----g---~~~-~~--~~~~~~~~~~~  232 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRA-----G---ADY-VI--NASMQDPLAEI  232 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHH-----T---CSE-EE--ETTTSCHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHh-----C---CCE-Ee--cCCCccHHHHH
Confidence            455678999999998  45555555544  54  999999999988888653     1   111 11  222111     


Q ss_pred             --CCC-CccceEEeccccc-cCCCccccc---ceEEEEe
Q 023019          244 --FAS-SSIDAVHAGAAIH-CWSSPSTGV---GVFFQVT  275 (288)
Q Consensus       244 --~~~-~sfD~V~~~~vl~-h~~d~~~~l---G~lvi~t  275 (288)
                        ... +.+|+|+....-. .+....+.+   |+++...
T Consensus       233 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          233 RRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence              112 4799999765543 444444444   7776644

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=85.06  E-value=0.25  Score=31.81  Aligned_cols=39  Identities=18%  Similarity=0.492  Sum_probs=21.8

Q ss_pred             ceeCCCCCCC-CcccCCCCCccccccCCceecCCCCcccc
Q 023019           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        71 ~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ...||.|+.. +.....+..+.+..+.-.+.|.+|++.+.
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~   54 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence            4679999983 22221111112223334678999998654

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=84.87  E-value=0.32  Score=34.67  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ..||.|+.+|.+.+           +...|..|+..|..
T Consensus        33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~   60 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   60 (101)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             ccCccCCCcceecC-----------CEEECccccchhhc
Confidence            56999999998753           56779999876543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=84.85  E-value=1.6  Score=39.23  Aligned_cols=49  Identities=18%  Similarity=0.024  Sum_probs=38.3

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~  219 (288)
                      ......++.+||.+|+|. |.++..+++.....+|+++|.++..++.+++
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            345567799999999986 8888777775322389999999998888865

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=84.73  E-value=4.5  Score=35.30  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=58.2

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---------CCCCcc
Q 023019          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------FASSSI  249 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---------~~~~sf  249 (288)
                      ..||++|||-=.....+.. ....+++-+| .+..++..++.+...+.....+..++.+|+.+ .         +.....
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence            4699999996555444431 1236899999 59999999999875422235678899999876 2         222345


Q ss_pred             ceEEeccccccCCCc
Q 023019          250 DAVHAGAAIHCWSSP  264 (288)
Q Consensus       250 D~V~~~~vl~h~~d~  264 (288)
                      -++++-.+++++++.
T Consensus       181 t~~i~Egvl~Yl~~~  195 (310)
T 2uyo_A          181 TAWLAEGLLMYLPAT  195 (310)
T ss_dssp             EEEEECSCGGGSCHH
T ss_pred             EEEEEechHhhCCHH
Confidence            578888899999763

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=84.36  E-value=3.7  Score=35.67  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             HHhhcCCCCCCeEEEEc-Cc-cchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          169 MKGYLKPVLGGNIIDAS-CG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiG-cG-~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      +.+.....++.+||-+| +| .|.....+++. |.  +|+++|.+++-++.+++.     |   ... .+  |..+..  
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~~-----G---a~~-~~--~~~~~~~~  198 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKAL-----G---AWE-TI--DYSHEDVA  198 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH-----T---CSE-EE--ETTTSCHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc-----C---CCE-EE--eCCCccHH
Confidence            33444567799999998 33 57777766665 54  999999999998888764     1   111 12  222111  


Q ss_pred             ------CCCCccceEEeccccccCCCccccc---ceEEEEec
Q 023019          244 ------FASSSIDAVHAGAAIHCWSSPSTGV---GVFFQVTL  276 (288)
Q Consensus       244 ------~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~t~  276 (288)
                            .....+|+|+....-..+......+   |+++....
T Consensus       199 ~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          199 KRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             HHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEec
Confidence                  1224699999765544333333333   77666543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=84.26  E-value=5.7  Score=32.65  Aligned_cols=77  Identities=16%  Similarity=0.130  Sum_probs=55.7

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------C
Q 023019          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  244 (288)
Q Consensus       178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------~  244 (288)
                      ++++|=.|++.|.   +...|++.|.  +|+.++.++..++...+.+...    ..++.++..|+.+..          -
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEK----GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            5678888876552   4556666676  9999999998888877776665    467889999987642          1


Q ss_pred             CCCccceEEecccccc
Q 023019          245 ASSSIDAVHAGAAIHC  260 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h  260 (288)
                      ..+..|+++.+..+..
T Consensus        79 ~~~~id~li~~Ag~~~   94 (247)
T 3lyl_A           79 ENLAIDILVNNAGITR   94 (247)
T ss_dssp             TTCCCSEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence            1246899998876543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=84.14  E-value=5.2  Score=33.81  Aligned_cols=77  Identities=29%  Similarity=0.348  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---------  244 (288)
                      +++.+|--|.+.|.   ....|++.|.  +|+.+|.+++.++.+.+.++..    ..++.++.+|+.+..-         
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            37788888887774   4566667776  9999999999998888888776    4678899999976420         


Q ss_pred             -CCCccceEEeccccc
Q 023019          245 -ASSSIDAVHAGAAIH  259 (288)
Q Consensus       245 -~~~sfD~V~~~~vl~  259 (288)
                       .-+..|+++.+..+.
T Consensus        80 ~~~G~iDiLVNNAGi~   95 (254)
T 4fn4_A           80 ETYSRIDVLCNNAGIM   95 (254)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCccc
Confidence             115789999887654

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=83.98  E-value=0.55  Score=32.48  Aligned_cols=27  Identities=37%  Similarity=0.992  Sum_probs=18.6

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ..||.|+.+|.+.+           +...|..|+..|.
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~   29 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDFS   29 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccCC
Confidence            45999998887753           3556777776554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=83.73  E-value=1.7  Score=38.06  Aligned_cols=50  Identities=12%  Similarity=0.066  Sum_probs=36.8

Q ss_pred             HHHhhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q 023019          168 LMKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCY  218 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~  218 (288)
                      .+.+.....++.+||-+|+  |.|.....+++... .+|+++|.+++-++.+.
T Consensus       140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~  191 (336)
T 4b7c_A          140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKCRFLV  191 (336)
T ss_dssp             HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH
Confidence            3335556677999999998  45777766666532 39999999998888773

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=83.40  E-value=0.55  Score=31.61  Aligned_cols=27  Identities=19%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~  106 (288)
                      -.+.|+.|+.......          .+..+|+.||.
T Consensus        27 v~Y~C~~CG~~~e~~~----------~d~irCp~CG~   53 (70)
T 1twf_L           27 LKYICAECSSKLSLSR----------TDAVRCKDCGH   53 (70)
T ss_dssp             CCEECSSSCCEECCCT----------TSTTCCSSSCC
T ss_pred             EEEECCCCCCcceeCC----------CCCccCCCCCc
Confidence            4478999999754422          34679999998

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=83.28  E-value=0.53  Score=29.56  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      ......||.|+..+.             .+.+.|..||..
T Consensus        11 ~~~k~iCpkC~a~~~-------------~gaw~CrKCG~~   37 (51)
T 3j21_g           11 IFKKYVCLRCGATNP-------------WGAKKCRKCGYK   37 (51)
T ss_dssp             SSSEEECTTTCCEEC-------------TTCSSCSSSSSC
T ss_pred             HhCCccCCCCCCcCC-------------CCceecCCCCCc
Confidence            457788999999743             368999999865

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=82.85  E-value=2.4  Score=37.20  Aligned_cols=49  Identities=14%  Similarity=0.010  Sum_probs=37.6

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.....++.+||-+|+  |.|..+..+++... .+|++++.+++-++.+++.
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc
Confidence            4556677999999997  35777777776532 4999999999888888764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=82.61  E-value=3.5  Score=34.92  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      .|+++|--|.+.|.   ....|++.|.  +|+.+|.+++.++.+.+.+...    ..++..+.+|+.+..          
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47778887877764   4566677776  9999999999988888777776    457888888987632          


Q ss_pred             CCCCccceEEeccccccC
Q 023019          244 FASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~  261 (288)
                      -.-+..|+++.+..+.+.
T Consensus        82 ~~~G~iDiLVNNAG~~~~   99 (255)
T 4g81_D           82 AEGIHVDILINNAGIQYR   99 (255)
T ss_dssp             HTTCCCCEEEECCCCCCC
T ss_pred             HHCCCCcEEEECCCCCCC
Confidence            123678999998876554

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=82.36  E-value=6.6  Score=32.88  Aligned_cols=66  Identities=8%  Similarity=0.122  Sum_probs=47.9

Q ss_pred             CeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023019          179 GNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~  254 (288)
                      .+||=.|+  |.++..+.+    .+.  +|++++-++.-......          .++.++.+|+.++.  ...+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence            57999995  766665554    455  99999998865443332          46889999998866  567899998


Q ss_pred             cccccc
Q 023019          255 GAAIHC  260 (288)
Q Consensus       255 ~~vl~h  260 (288)
                      ......
T Consensus        70 ~a~~~~   75 (286)
T 3ius_A           70 STAPDS   75 (286)
T ss_dssp             CCCCBT
T ss_pred             CCCccc
Confidence            776543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.91  E-value=3.2  Score=32.65  Aligned_cols=66  Identities=11%  Similarity=0.132  Sum_probs=43.8

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----C-CCCcc
Q 023019          178 GGNIIDASCGS-GL-FSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----F-ASSSI  249 (288)
Q Consensus       178 ~~~VLDiGcG~-G~-~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~-~~~sf  249 (288)
                      +.+|+=+|+|. |. +...|.+. +.  +|+++|.+++.++.+++.          .+..+.+|..+..    . .-..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~~----------g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRSE----------GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHHT----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHHC----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence            56899999874 54 34555566 66  899999999887776542          3445677765421    1 23468


Q ss_pred             ceEEec
Q 023019          250 DAVHAG  255 (288)
Q Consensus       250 D~V~~~  255 (288)
                      |+|+..
T Consensus       107 d~vi~~  112 (183)
T 3c85_A          107 KLVLLA  112 (183)
T ss_dssp             CEEEEC
T ss_pred             CEEEEe
Confidence            888873

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=81.88  E-value=5.9  Score=33.32  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CC---
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~---  245 (288)
                      .++++|-.|++.|.   +...|++.|.  +|+.++.++..++...+.+...    ..++.++.+|+.+..     +.   
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHH
Confidence            36788888876542   4455566676  9999999998777666655544    356888999987642     10   


Q ss_pred             ---CCccceEEeccccc
Q 023019          246 ---SSSIDAVHAGAAIH  259 (288)
Q Consensus       246 ---~~sfD~V~~~~vl~  259 (288)
                         ++..|+++.+..+.
T Consensus        94 ~~~~g~id~lv~nAg~~  110 (273)
T 1ae1_A           94 HVFDGKLNILVNNAGVV  110 (273)
T ss_dssp             HHTTSCCCEEEECCCCC
T ss_pred             HHcCCCCcEEEECCCCC
Confidence               15789999887654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=81.48  E-value=7.8  Score=33.16  Aligned_cols=82  Identities=22%  Similarity=0.216  Sum_probs=59.3

Q ss_pred             cCCCCCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-----
Q 023019          173 LKPVLGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----  244 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-----  244 (288)
                      +....+++||=.|++.|.   +...|++.|.  +|+.++.++..++.+.+.+...    ..++.++.+|+.+..-     
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~   99 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLA   99 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHH
Confidence            333457789999987653   4566666776  9999999999888887777665    4678899999986420     


Q ss_pred             C-----CCccceEEecccccc
Q 023019          245 A-----SSSIDAVHAGAAIHC  260 (288)
Q Consensus       245 ~-----~~sfD~V~~~~vl~h  260 (288)
                      .     .+..|+++.+..+..
T Consensus       100 ~~~~~~~g~id~lvnnAg~~~  120 (301)
T 3tjr_A          100 DEAFRLLGGVDVVFSNAGIVV  120 (301)
T ss_dssp             HHHHHHHSSCSEEEECCCCCC
T ss_pred             HHHHHhCCCCCEEEECCCcCC
Confidence            0     136899998876543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=81.45  E-value=3.5  Score=32.34  Aligned_cols=33  Identities=9%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s  210 (288)
                      .+-|||+|-|+|+.--.+.+..|+.+++.+|-.
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~   73 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERA   73 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESS
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEee
Confidence            557999999999999999999998999999853

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=81.33  E-value=5.9  Score=32.95  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CC---
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~---  245 (288)
                      .++++|-.|++.|.   +...|++.|.  +|+.++.++..++...+.+...    ..++.++.+|+.+..     +.   
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   81 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVA   81 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            36788888876542   4455566676  9999999988777666655544    346888899987642     10   


Q ss_pred             ---CCccceEEeccccc
Q 023019          246 ---SSSIDAVHAGAAIH  259 (288)
Q Consensus       246 ---~~sfD~V~~~~vl~  259 (288)
                         .+..|+++.+..+.
T Consensus        82 ~~~~g~id~lv~~Ag~~   98 (260)
T 2ae2_A           82 NHFHGKLNILVNNAGIV   98 (260)
T ss_dssp             HHTTTCCCEEEECCCCC
T ss_pred             HHcCCCCCEEEECCCCC
Confidence               15789999877654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.31  E-value=6.9  Score=32.25  Aligned_cols=76  Identities=21%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----  244 (288)
                      .++++|=.|++.|.   +...|++.|.  +|+.+|.++..++...+.+...    ..++.++.+|+.+..     +    
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            36788888877652   4566666676  9999999999888887777665    467888999988642     0    


Q ss_pred             -CCCccceEEecccc
Q 023019          245 -ASSSIDAVHAGAAI  258 (288)
Q Consensus       245 -~~~sfD~V~~~~vl  258 (288)
                       ..+..|+++.+..+
T Consensus        82 ~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence             01368999987765

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.31  E-value=8.9  Score=32.00  Aligned_cols=76  Identities=21%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----  244 (288)
                      .++++|=.|++.|.   +...|++.|.  +|+.+|.++..++...+.+...    ..++.++.+|+.+..     +    
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDT----GRRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            46789988887763   4566677776  9999999998888877777665    467889999998642     1    


Q ss_pred             -CCCccceEEecccc
Q 023019          245 -ASSSIDAVHAGAAI  258 (288)
Q Consensus       245 -~~~sfD~V~~~~vl  258 (288)
                       .-+..|+++.+...
T Consensus        84 ~~~g~id~lv~nAg~   98 (264)
T 3ucx_A           84 KAYGRVDVVINNAFR   98 (264)
T ss_dssp             HHTSCCSEEEECCCS
T ss_pred             HHcCCCcEEEECCCC
Confidence             11468999987754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=81.18  E-value=4.2  Score=35.52  Aligned_cols=49  Identities=16%  Similarity=0.160  Sum_probs=38.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ......++.+||-+|+|. |.++..+++... .+|+++|.+++.++.+++.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHc
Confidence            334566799999999985 888877777632 4999999999999888763

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=81.08  E-value=0.66  Score=31.32  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCC
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  112 (288)
                      ++.|| |+..+...+         ......|+ ||.......
T Consensus         4 vv~C~-C~~~~~~~~---------~~kT~~C~-CG~~~~~~k   34 (71)
T 1gh9_A            4 IFRCD-CGRALYSRE---------GAKTRKCV-CGRTVNVKD   34 (71)
T ss_dssp             EEEET-TSCCEEEET---------TCSEEEET-TTEEEECCS
T ss_pred             EEECC-CCCEEEEcC---------CCcEEECC-CCCeeeece
Confidence            57899 999765543         34678999 998765543

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=81.08  E-value=1.9  Score=43.90  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC---------------
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---------------  241 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~---------------  241 (288)
                      ...++||+-||.|.++.-|.+.|....+.++|+++..++.-+.+        .+...++.+|+..               
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N--------~p~~~~~~~DI~~l~~~~~~~di~~~~~  610 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN--------NPGSTVFTEDCNILLKLVMAGETTNSRG  610 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH--------CTTSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh--------CCCCccccccHHHHhhhccchhhhhhhh
Confidence            34579999999999999999888523578999999988877766        2344455555321               


Q ss_pred             --CCCCCCccceEEeccc
Q 023019          242 --LPFASSSIDAVHAGAA  257 (288)
Q Consensus       242 --lp~~~~sfD~V~~~~v  257 (288)
                        +| ..+.+|+|+...-
T Consensus       611 ~~lp-~~~~vDll~GGpP  627 (1002)
T 3swr_A          611 QRLP-QKGDVEMLCGGPP  627 (1002)
T ss_dssp             CBCC-CTTTCSEEEECCC
T ss_pred             hhcc-cCCCeeEEEEcCC
Confidence              22 1356899988653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=80.94  E-value=3.9  Score=36.02  Aligned_cols=50  Identities=24%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++.-++.+++.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            334566799999999885 77877787764323899999999988888753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=80.79  E-value=4.2  Score=36.42  Aligned_cols=49  Identities=18%  Similarity=0.081  Sum_probs=38.4

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++.
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc
Confidence            34566799999999875 88888887764323799999999999888763

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=80.54  E-value=4.8  Score=35.00  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.....++.+||-+|+  |.|.....+++... .+|+++|.+++.++.+++.
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~  192 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEY  192 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc
Confidence            3445667999999994  35777766666532 4999999999988887763

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=80.51  E-value=7.1  Score=32.85  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeC-------------CHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-------------SENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-------------s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~  240 (288)
                      .++++|=.|++.|.   +...|++.|.  +|+.+|.             ++..++...+.+...    ..++.++.+|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA----NRRIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence            46788988887663   4566677776  9999998             666666666655554    467889999988


Q ss_pred             CCC-----CC-----CCccceEEeccccccC
Q 023019          241 RLP-----FA-----SSSIDAVHAGAAIHCW  261 (288)
Q Consensus       241 ~lp-----~~-----~~sfD~V~~~~vl~h~  261 (288)
                      +..     +.     -+..|+++.+..+...
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~  114 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAP  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            642     11     1468999988776543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.42  E-value=10  Score=31.84  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CCCCc
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS  248 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~s  248 (288)
                      .|+++|--|.+.|.   ....|++.|.  +|+..|.+..  +.+.+.+...    ..++..+.+|+.+..     +..+.
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~--~~~~~~~~~~----g~~~~~~~~Dv~d~~~v~~~~~~g~   79 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAP--DETLDIIAKD----GGNASALLIDFADPLAAKDSFTDAG   79 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCC--HHHHHHHHHT----TCCEEEEECCTTSTTTTTTSSTTTC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcH--HHHHHHHHHh----CCcEEEEEccCCCHHHHHHHHHhCC
Confidence            47778877877764   4567777777  8999998753  2333334444    457888899987532     44578


Q ss_pred             cceEEeccccccC
Q 023019          249 IDAVHAGAAIHCW  261 (288)
Q Consensus       249 fD~V~~~~vl~h~  261 (288)
                      .|+++.+..+...
T Consensus        80 iDiLVNNAGi~~~   92 (247)
T 4hp8_A           80 FDILVNNAGIIRR   92 (247)
T ss_dssp             CCEEEECCCCCCC
T ss_pred             CCEEEECCCCCCC
Confidence            9999988776543

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=80.12  E-value=1.3  Score=29.89  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023019           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      ..+.||.|+..-...         ...+.|.|..|+..+.
T Consensus        25 ~ky~C~fCgk~~vkR---------~a~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKR---------GAAGIWTCSCCKKTVA   55 (72)
T ss_dssp             SCBCCSSCCSSCBSB---------CSSSCBCCSSSCCCCC
T ss_pred             cCccCCCCCCceeEe---------cCCCeEECCCCCCEEe
Confidence            346799999853222         2357999999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-09
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-08
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	6e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	9e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.001
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.001
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.001
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	0.001
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.002

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (128), Expect = 4e-09
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 34/207 (16%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMS 131
            +CP+C++PL+              +S  C    +       + ++      +      S
Sbjct: 2   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 50

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
              E  +            R+ F+  G   P ++     ++  L       ++D  CG G
Sbjct: 51  A--EMMQ-----------ARRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEG 96

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSS 248
            ++  FA +        LD S+  +K   +   Q +     +  L  +D S     A   
Sbjct: 97  YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTS---MDAIIR 153

Query: 249 IDAVHAGAAIHCWSSPSTGVGVFFQVT 275
           I A      +     P    G     T
Sbjct: 154 IYAPCKAEELARVVKPG---GWVITAT 177

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 154 FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
                 PGP       L+    +P      +D  CG+G  +   A       V A+D + 
Sbjct: 8   IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65

Query: 212 NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
             +      +Q+  +   +N  L+  D          ID    G +    
Sbjct: 66  EAISTTEMNLQR--HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL 113

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 17  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 73

Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
            K  F    +    +             +  + +S+ 
Sbjct: 74  FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTS 110

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D  CG+G+ S   AK+G    V+ +D SE + +        +         L++ 
Sbjct: 36  DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLED---TITLIKG 91

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPS 265
            I  +      +D + +    +     S
Sbjct: 92  KIEEVHLPVEKVDVIISEWMGYFLLFES 119

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
           LK      ++D + G G  +  FA       VVA D +E++LK    F++ 
Sbjct: 13  LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 59

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 8/90 (8%), Positives = 20/90 (22%), Gaps = 6/90 (6%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLL 234
            +D   G G      A +        ++ ++   K      ++              + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 235 VRADISRLPFASSSIDAVHAGAAIHCWSSP 264
            R D     +     +          +   
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPE 244

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 8/147 (5%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192
           A E     +      R W Q ++        +    + G L+      ++D +CG+G+ S
Sbjct: 13  AAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDS 71

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-----SRLPFASS 247
            +  + G    V ++D S+ MLK   +        P  +  ++           +P    
Sbjct: 72  IMLVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129

Query: 248 SIDAVHAGAAIHCWSSPSTGVGVFFQV 274
               +  G +                 
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLA 156

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
           +++ +      GN+++     G F+    +   F+ +  ++ SE  +      ++ 
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKD 64

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 165 EFELMKGYLKPVLGG------------NIIDASCGSGLFSRIFAK------SGLFSLVVA 206
           E + M+ ++   L G             I+    G+G               G+      
Sbjct: 16  EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEV 75

Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHAGAAIHC 260
           ++ S   + +  E V + SN     F   +   S               D +H    ++ 
Sbjct: 76  VEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY 135

Query: 261 WSSP 264
               
Sbjct: 136 VKDI 139

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D   G+G+     AK+G    V+ ++ S             ++N       +++ 
Sbjct: 34  DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVK---IVKANKLDHVVTIIKG 89

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPS 265
            +  +      +D + +    +C    S
Sbjct: 90  KVEEVELPVEKVDIIISEWMGYCLFYES 117

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
            +K      I+     +G      A      +V A++Y+  +++   E +   +      
Sbjct: 71  PIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR---ELLDACAERENII 125

Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSP 264
            +L         +A+           +   +  
Sbjct: 126 PILGD-ANKPQEYANIVEKVDVIYEDVAQPNQA 157

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 135 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 193
             +  P        G          P   +   +        V G  +ID   G  ++  
Sbjct: 21  NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225
           + +    F  +   D+ E   ++   ++Q+E 
Sbjct: 70  LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.84
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.74
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.71
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.68
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.66
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.64
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.62
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.59
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.57
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.56
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.55
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.53
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.52
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.51
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.45
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.44
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.42
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.4
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.4
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.4
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.4
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.39
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.35
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.33
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.32
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.29
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.27
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.22
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.22
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.22
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.2
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.19
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.17
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.17
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.16
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.16
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.12
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.0
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.96
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.94
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.85
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.85
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.83
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.81
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.8
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.75
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.74
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.67
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.65
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.63
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.58
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.54
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.52
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.48
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.46
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.43
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.42
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.37
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.34
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.25
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.24
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.23
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.21
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.21
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.18
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.16
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.1
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.06
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.87
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.79
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.77
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.69
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.65
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.63
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.62
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.61
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.52
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.38
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.25
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.17
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.16
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.04
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.75
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.68
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.42
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.18
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.75
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.64
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.18
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.09
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.83
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	93.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.6
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	92.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.09
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.05
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.84
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	91.81
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.52
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.52
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.47
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.38
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.71
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.27
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.25
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.97
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	89.8
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.55
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	89.25
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.71
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.16
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	87.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.83
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.33
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.32
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.19
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	87.08
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	87.04
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	86.77
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	86.77
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.47
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.2
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.17
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.83
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	85.75
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.07
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.38
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	84.37
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.3
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.15
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	84.03
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	83.66
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.53
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	83.49
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	83.24
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.77
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.44
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	81.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.01
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	80.58

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.8e-28  Score=213.71  Aligned_cols=184  Identities=20%  Similarity=0.250  Sum_probs=145.7

Q ss_pred             ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHH
Q 023019           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (288)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  150 (288)
                      .|+||+|+++|...           .+.+.|.+||.++..++||+++++......|.....  .+.+.           .
T Consensus         1 sf~CP~C~~~L~~~-----------~~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~--~~~~~-----------a   56 (268)
T d1p91a_           1 SFSCPLCHQPLSRE-----------KNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS--AEMMQ-----------A   56 (268)
T ss_dssp             CBBCTTTCCBCEEE-----------TTEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS--HHHHH-----------H
T ss_pred             CccCCCCChhhhcC-----------CCeEECCCCCccccccCceEecccccccccCCCCCC--HHHHH-----------H
Confidence            37899999998754           367999999999999999999987654443322210  11111           2


Q ss_pred             hhhhhcCCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 023019          151 RQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (288)
Q Consensus       151 r~~~~~~g~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~  228 (288)
                      |+.++..|++.+..+  .+.+...+. .++.+|||||||+|.++..+++.+++.+++|+|+|+.|++.|+++        
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------  127 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  127 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------
Confidence            445555555544332  333444443 457899999999999999999998888999999999999999886        


Q ss_pred             CCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---ceEEEEecCcccHHHHHhh
Q 023019          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       229 ~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      ..++.+.++|+.++|+++++||+|++.++++|+.+..++|   |.+++.++.++.+.++++.
T Consensus       128 ~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~  189 (268)
T d1p91a_         128 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGL  189 (268)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred             cccccceeeehhhccCCCCCEEEEeecCCHHHHHHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence            5688999999999999999999999999999998888888   9999999999999998764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=9.4e-21  Score=160.83  Aligned_cols=109  Identities=22%  Similarity=0.296  Sum_probs=98.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+   ..++.++++|++++|+++
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~~~   80 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD   80 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---cccccccccccccccccc
Confidence            5677888888999999999999999999999886  99999999999999999988762   468999999999999999


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      ++||+|++.++++|++|+..++          |++++.++....
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~  124 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE  124 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence            9999999999999999998888          889888765543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=5.3e-20  Score=155.26  Aligned_cols=108  Identities=22%  Similarity=0.346  Sum_probs=96.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +..+++.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+   ..++.++++|++++|++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---ccccccccccccccccc
Confidence            35667778888899999999999999999999987  99999999999999999988762   57899999999999999


Q ss_pred             CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~  278 (288)
                      +++||+|++.++++|++|+..++          |++++.++..
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999999999999999999988          8899877643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.78  E-value=1.5e-18  Score=151.16  Aligned_cols=106  Identities=14%  Similarity=0.069  Sum_probs=92.0

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +.......++.+|||||||+|.++..++++.. .+|+|+|+|+.|++.|+++.... | ...++.++++|+.++|+++++
T Consensus        59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~-g-l~~~v~~~~~d~~~l~~~~~s  135 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA-G-LADNITVKYGSFLEIPCEDNS  135 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH-T-CTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhcccccc-c-ccccccccccccccccccccc
Confidence            33444567799999999999999999988732 49999999999999999998876 2 346899999999999999999


Q ss_pred             cceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          249 IDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ||+|++..+++|++++..++          |+|++.++.
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            99999999999999998887          888888764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.1e-18  Score=143.82  Aligned_cols=112  Identities=16%  Similarity=0.152  Sum_probs=96.7

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      ....+..+.+.+...++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++....+  ...++.++++|+.+
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~~~   94 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAG   94 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTT
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHHhh
Confidence            344567788888888999999999999999999988743 599999999999999999988762  34679999999999


Q ss_pred             CCCCCCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      + +.+++||+|++..+++|++|+..++          |++++..+.
T Consensus        95 ~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          95 Y-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             C-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             c-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            8 4678999999999999999998877          899888754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=4.7e-18  Score=142.19  Aligned_cols=101  Identities=26%  Similarity=0.442  Sum_probs=87.0

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +.++++  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ...+.++.+|+.++++++++
T Consensus        31 ~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~~~~  102 (226)
T d1ve3a1          31 LMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKT  102 (226)
T ss_dssp             HHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTC
T ss_pred             HHHhcC--CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc----cccccccccccccccccCcC
Confidence            344554  478999999999999999999876  9999999999999999998776    46778899999999999999


Q ss_pred             cceEEeccccccCC--Cccccc----------ceEEEEecC
Q 023019          249 IDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~  277 (288)
                      ||+|++.++++|++  ++.+++          |.+++..+.
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            99999999999997  455555          888887764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.2e-17  Score=139.74  Aligned_cols=92  Identities=24%  Similarity=0.279  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec-
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~-  255 (288)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++..         ..++.+|++++|+++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeeec
Confidence            477999999999999999999876  99999999999999998721         226789999999999999999985 


Q ss_pred             cccccCCCccccc----------ceEEEEecCcc
Q 023019          256 AAIHCWSSPSTGV----------GVFFQVTLIIH  279 (288)
Q Consensus       256 ~vl~h~~d~~~~l----------G~lvi~t~~~~  279 (288)
                      .++||++|+.+++          |.++++++...
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~~  144 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  144 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECCHH
Confidence            6899999999887          88888876543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.68  E-value=5.2e-17  Score=136.69  Aligned_cols=97  Identities=13%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      .+++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.       ..++.++.+|++++++ +++||+|++.+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~~~~   89 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIVLTH   89 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEEEES
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccccccc
Confidence            366899999999999999999887  8999999999999999873       3478999999998876 57899999999


Q ss_pred             ccccCCCccccc-----------ceEEEEecCcccHHH
Q 023019          257 AIHCWSSPSTGV-----------GVFFQVTLIIHVVED  283 (288)
Q Consensus       257 vl~h~~d~~~~l-----------G~lvi~t~~~~~l~e  283 (288)
                      +|||++||..++           |.+++.++...++..
T Consensus        90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~  127 (225)
T d2p7ia1          90 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSR  127 (225)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred             eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHH
Confidence            999999988776           889998887665543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.2e-17  Score=136.94  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=84.2

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      ...++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|++++...+   ..++.++++|++++++++++||+|+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---ccccccccccccccccccccccccc
Confidence            345578999999999999998876654 489999999999999999987652   4578999999999999999999999


Q ss_pred             eccccccCCCcc--ccc----------ceEEEEecC
Q 023019          254 AGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       254 ~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      +.++++|+++++  .++          |.+++.+..
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            999999999874  344          888887653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=4.9e-16  Score=128.03  Aligned_cols=95  Identities=20%  Similarity=0.267  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      .+++|||||||+|..+..+++++.  +|+|+|+|+.|++.++++.+..+   ..++.+...|+..+++ +++||+|++..
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~I~~~~  103 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF-DGEYDFILSTV  103 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC-CCCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc-cccccEEEEee
Confidence            356999999999999999999987  99999999999999999887762   4678999999998886 68899999999


Q ss_pred             ccccCCCcc--ccc----------ceEEEEecC
Q 023019          257 AIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       257 vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      +++|++++.  +++          |.+++.++.
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999997654  233          888887764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=1.1e-16  Score=132.58  Aligned_cols=89  Identities=16%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      +.+|||||||+|.++..+.      +++|+|+|+.|++.|+++          ++.++++|++++|+++++||+|++.++
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccccc
Confidence            5689999999999988773      579999999999999874          678999999999999999999999999


Q ss_pred             cccCCCccccc----------ceEEEEecCcccHH
Q 023019          258 IHCWSSPSTGV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       258 l~h~~d~~~~l----------G~lvi~t~~~~~l~  282 (288)
                      |+|++|+..++          |.+++.++...++.
T Consensus       101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~  135 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL  135 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHH
T ss_pred             cccccccccchhhhhhcCCCCceEEEEecCCcchh
Confidence            99999998888          89999998776543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=1.5e-16  Score=130.15  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .+....+...+.+.++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.|+++++..+  ...+++++++|+.+.
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda~~~   94 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEA   94 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECchhhc
Confidence            44467788889999999999999999999999998775  99999999999999999998872  346899999999988


Q ss_pred             CCCCCccceEEeccccccCCCccccc-------ceEEEEecCcccHHHHHh
Q 023019          243 PFASSSIDAVHAGAAIHCWSSPSTGV-------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       243 p~~~~sfD~V~~~~vl~h~~d~~~~l-------G~lvi~t~~~~~l~el~~  286 (288)
                      +++...||.|++....+++.+....+       |++++.....++..++.+
T Consensus        95 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~  145 (186)
T d1l3ia_          95 LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAME  145 (186)
T ss_dssp             HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHH
T ss_pred             ccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHH
Confidence            88888999999998877765443222       888888877666665543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.64  E-value=6.1e-16  Score=134.51  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             HHHHhhc-CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          167 ELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       167 ~~l~~~l-~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      +.+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.|++.|++++...    ..++.+.++|+.++++
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----cccccccccccccccc
Confidence            3344333 445678999999999999999988754 368999999999999999998876    4579999999999988


Q ss_pred             CCCccceEEeccccccCCCccccc----------ceEEEEec
Q 023019          245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      + ++||+|++.++++|+++|..++          |.+++.++
T Consensus        92 ~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          92 N-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             S-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             c-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            5 5799999999999999999888          88888775

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=4.1e-16  Score=132.62  Aligned_cols=102  Identities=22%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      +.......++.+|||||||+|.++..+++.+.  +|+|+|+|++|++.|++++...    ..++.++++|+++++++ ++
T Consensus        33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~----~~~i~~~~~d~~~l~~~-~~  105 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NE  105 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SC
T ss_pred             HHHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccc----cccchheehhhhhcccc-cc
Confidence            34444555678999999999999999999887  9999999999999999998876    45899999999999986 58


Q ss_pred             cceEEec-cccccCC--Cccccc----------ceEEEEecC
Q 023019          249 IDAVHAG-AAIHCWS--SPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       249 fD~V~~~-~vl~h~~--d~~~~l----------G~lvi~t~~  277 (288)
                      ||+|++. .+++|+.  +..++|          |.+++....
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            9999986 6788874  333455          778776543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=1.7e-15  Score=129.91  Aligned_cols=132  Identities=15%  Similarity=0.180  Sum_probs=110.1

Q ss_pred             HhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 023019          150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (288)
Q Consensus       150 wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~  228 (288)
                      |...+-+....-..++...+...+...||.+|||+|||+|.++..|++. ++.++|+++|+++++++.|+++++...+..
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~  148 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP  148 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence            4444444455566777889999999999999999999999999999988 788899999999999999999987653334


Q ss_pred             CCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       229 ~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ..++.+.++|+.+.++++++||+|+.     |+++|..++          |.+++-.+....+..+.+
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~  211 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE  211 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             CceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHH
Confidence            67999999999999999999999975     789998888          888888887766655543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.63  E-value=3.6e-16  Score=134.05  Aligned_cols=104  Identities=11%  Similarity=0.045  Sum_probs=86.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+++.+...+..+|||+|||+|.++..++..+. ..|+++|+|+.|++.|++++...     .++.++++|++++++++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccccCC
Confidence            4455566666788999999999999998876644 38999999999999999986543     56899999999999999


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEec
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTL  276 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~  276 (288)
                      ++||+|++..+++|+++++  .++          |.+++...
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            9999999999999998875  344          88888764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.62  E-value=1.4e-15  Score=129.96  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~  255 (288)
                      ++.+|||||||+|..+..+++.+. .+|+|+|+|+.|++.|++++...+  ...++.+.++|+...++ .+++||+|++.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhcccccccceEEEEc
Confidence            488999999999999999988865 489999999999999999887651  24579999999987765 46789999999


Q ss_pred             cccccCCCccc----cc----------ceEEEEecCcccHH
Q 023019          256 AAIHCWSSPST----GV----------GVFFQVTLIIHVVE  282 (288)
Q Consensus       256 ~vl~h~~d~~~----~l----------G~lvi~t~~~~~l~  282 (288)
                      +++||+.++..    ++          |.|++.++..+.+.
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~  141 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL  141 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHH
Confidence            99999866543    22          88888877655443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=5e-16  Score=132.07  Aligned_cols=95  Identities=19%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec-
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~-  255 (288)
                      ++++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+..+++ +++||+|++. 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI-NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcccccccc----Cccceeeccchhhhcc-cccccccceee
Confidence            467999999999999999999987  9999999999999999998776    4579999999998886 4689999985 


Q ss_pred             cccccCCCccc---cc----------ceEEEEecCc
Q 023019          256 AAIHCWSSPST---GV----------GVFFQVTLII  278 (288)
Q Consensus       256 ~vl~h~~d~~~---~l----------G~lvi~t~~~  278 (288)
                      .+++|+.+++.   ++          |.|++.....
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            78898876544   33          8888765543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.9e-15  Score=124.78  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=87.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKEN  231 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~--------------g~~~~~  231 (288)
                      .+.+.+.+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++.....              .....+
T Consensus        34 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            45566777777889999999999999999999998  99999999999999998864320              001357


Q ss_pred             EEEEEecCCCCC-CCCCccceEEeccccccCCCccc--cc----------ceEEEEecC
Q 023019          232 FLLVRADISRLP-FASSSIDAVHAGAAIHCWSSPST--GV----------GVFFQVTLI  277 (288)
Q Consensus       232 i~~~~~d~~~lp-~~~~sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~~  277 (288)
                      ++++++|+..++ ...+.||+|+...+++|++....  .+          |.+++.++.
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            899999998874 55789999999999999965432  22          888888764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=1.7e-14  Score=120.94  Aligned_cols=99  Identities=13%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~  253 (288)
                      .++.+|||||||+|..+..+++..  ++.+|+|+|+|+.|++.|+++++..  ....++.+..+|+.+++  ...+|+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~~--~~~~d~i~  113 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVE--IKNASMVI  113 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--cccchhhhccchhhccc--cccceeeE
Confidence            348899999999999999998763  5679999999999999999998765  23466778888887665  46789999


Q ss_pred             eccccccCC--Cccccc----------ceEEEEecCc
Q 023019          254 AGAAIHCWS--SPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       254 ~~~vl~h~~--d~~~~l----------G~lvi~t~~~  278 (288)
                      +..+++|++  ++.+++          |.+++.++..
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            999999996  445555          9899987653

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=1.2e-14  Score=121.21  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ...+++.+..+++.+|||||||+|+++..+++. ++.+.|+++|+++.+++.|+++++..+   ..++.++.+|+.+.++
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchHHccc
Confidence            456778888899999999999999999999886 566799999999999999999998762   5789999999988877


Q ss_pred             CCCccceEEeccccccCCCc-cccc---ceEEEEe
Q 023019          245 ASSSIDAVHAGAAIHCWSSP-STGV---GVFFQVT  275 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~t  275 (288)
                      .+++||+|++..+++|+++. .+.|   |++++..
T Consensus       141 ~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         141 EFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             cccchhhhhhhccHHHhHHHHHHhcCCCcEEEEEE
Confidence            78899999999999999763 2333   7777754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.56  E-value=2.2e-15  Score=122.79  Aligned_cols=106  Identities=17%  Similarity=0.141  Sum_probs=83.2

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---------CCCCEEEEEecCC
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---------PKENFLLVRADIS  240 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~---------~~~~i~~~~~d~~  240 (288)
                      ...+...++.+|||+|||+|..+..|+++|.  +|+|+|+|+.|++.|+++++..+..         ......++.+|+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3446677899999999999999999999997  9999999999999999987553100         1245678999998


Q ss_pred             CCCC-CCCccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          241 RLPF-ASSSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       241 ~lp~-~~~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      +++. ....||+|++..+++|+++..  ..+          |.+++..+.
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            8864 347899999999999997632  222          777776654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=1.5e-14  Score=118.80  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=88.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+++.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.|+++++.. +....++.+..+|+.+ ++++
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~-~l~~~~i~~~~~d~~~-~~~~  117 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE-NVKD  117 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT-TCTTSCEEEEECSTTT-TCTT
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHh-CCccceEEEEEcchhh-hhcc
Confidence            5677788888899999999999999999998887  9999999999999999998876 4445679999999977 5678


Q ss_pred             CccceEEeccccccCCCc-cccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSP-STGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~-~~~l----------G~lvi~t~~  277 (288)
                      ++||+|+++.++++..+. +.++          |.+++....
T Consensus       118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            899999999888876553 2333          777765543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2e-14  Score=124.68  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=87.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ++.+.+.+...+|.+|||||||+|.++..+++... .+|+|+|+|+++++.|+++++.. | ....+.+...|..++   
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~-~-l~~~~~~~~~d~~~~---  114 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASI-D-TNRSRQVLLQGWEDF---  114 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTS-C-CSSCEEEEESCGGGC---
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhh-c-cccchhhhhhhhhhh---
Confidence            46778888889999999999999999999987743 49999999999999999999887 2 245677787777665   


Q ss_pred             CCccceEEeccccccCCCc--cccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~  277 (288)
                      +++||.|++..+++|+.+.  ..++          |++++.+..
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            4689999999999999866  3444          999887644

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2.7e-14  Score=124.32  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=87.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...+|.+|||||||+|.++..+++..+ ++|+|+++|+++++.|++++... | ....+.+...|.   ++.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~-~-l~~~v~~~~~d~---~~~  123 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV-D-SPRRKEVRIQGW---EEF  123 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHS-C-CSSCEEEEECCG---GGC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhh-c-cchhhhhhhhcc---ccc
Confidence            46778888999999999999999999999887643 59999999999999999998876 2 345677777775   345


Q ss_pred             CCccceEEeccccccCCCcc----------------ccc---ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPS----------------TGV---GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~----------------~~l---G~lvi~t~~  277 (288)
                      +++||.|++..+++|++++.                ++|   |++++.++.
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            78999999999999998853                222   999988875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=6.4e-14  Score=119.18  Aligned_cols=116  Identities=19%  Similarity=0.130  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023019          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (288)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~  241 (288)
                      .++...+..++...+|.+|||+|||+|.++..+++. ++.++|+++|.++.+++.|+++++..+  ...++.+..+|+.+
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIAD  148 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTT
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeec
Confidence            345677888889999999999999999999999987 677799999999999999999998762  25789999999987


Q ss_pred             CCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      . ++++.||+|+.     ++++|..++          |++++..+....+.++.+
T Consensus       149 ~-~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~  197 (250)
T d1yb2a1         149 F-ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL  197 (250)
T ss_dssp             C-CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHH
T ss_pred             c-cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHH
Confidence            6 45789999986     577887777          888887776555555443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=5.6e-14  Score=121.97  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=90.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+..++|.+|||||||+|.++.++++... ++|+|+++|+.+++.|++++++.+  ...++.+..+|..+++  
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhccc--
Confidence            46778888999999999999999999998887753 699999999999999999988762  3578999999988775  


Q ss_pred             CCccceEEeccccccCCCc--cccc----------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~  277 (288)
                       ++||.|++..+++|+...  ..++          |++++.++.
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence             689999999999999654  3444          999987775

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=4.3e-15  Score=127.01  Aligned_cols=113  Identities=12%  Similarity=0.161  Sum_probs=87.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+...  ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..    ..++.+.++|+.. .++
T Consensus       111 l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n----~~~~~~~~~d~~~-~~~  181 (254)
T d2nxca1         111 LKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN----GVRPRFLEGSLEA-ALP  181 (254)
T ss_dssp             HHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT----TCCCEEEESCHHH-HGG
T ss_pred             HHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHc----CCceeEEeccccc-ccc
Confidence            344554443  589999999999999999998886  9999999999999999999887    3466788888765 345


Q ss_pred             CCccceEEeccccccCCCcc----ccc---ceEEEEecCcccHHHHHhh
Q 023019          246 SSSIDAVHAGAAIHCWSSPS----TGV---GVFFQVTLIIHVVEDLAVS  287 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~----~~l---G~lvi~t~~~~~l~el~~~  287 (288)
                      +++||+|+++...+.+.+..    +.|   |+++++.+......++.+.
T Consensus       182 ~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~  230 (254)
T d2nxca1         182 FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREA  230 (254)
T ss_dssp             GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred             ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHH
Confidence            68999999987666554332    222   9999988877777766553

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=124.97  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh----CC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC------CC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS----GL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------LP  243 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~----~~--~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~------lp  243 (288)
                      ++..+|||||||+|.++..+++.    ++  ...++|+|+|+.|++.|+++++...+.....+.+...+++.      .+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            34457999999999987776553    22  24789999999999999999876422122233444444432      35


Q ss_pred             CCCCccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV  280 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~  280 (288)
                      .++++||+|++.++|+|++|+..++          |.+++.++...+
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence            6789999999999999999998888          888888876655

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=113.74  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=87.3

Q ss_pred             HHHHhhc--CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCCCEEEEEecCCC
Q 023019          167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRADISR  241 (288)
Q Consensus       167 ~~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g--~~~~~i~~~~~d~~~  241 (288)
                      ..+.+.|  ...+|.+|||||||+|+.+..+++. ++.++|+++|+++++++.|++++++.+-  ....++.+..+|+..
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            4555666  4567999999999999999998886 5667999999999999999999876410  113678999999998


Q ss_pred             CCCCCCccceEEeccccccCCCc-cccc---ceEEEEe
Q 023019          242 LPFASSSIDAVHAGAAIHCWSSP-STGV---GVFFQVT  275 (288)
Q Consensus       242 lp~~~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~t  275 (288)
                      .+.++++||+|++..+++++++. .+.|   |++++..
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence            88888999999999999998753 2233   7777654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.45  E-value=2.4e-13  Score=113.81  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=85.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+.+.+...++.+|||||||+|+++..+++.+.  +|+++|+++.+++.|++++...     .++.++.+|+.....+
T Consensus        59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEE  131 (224)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGG
T ss_pred             HHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcc-----cccccccCchhhcchh
Confidence            34567788888999999999999999999999876  9999999999999999987653     6899999998765556


Q ss_pred             CCccceEEeccccccCCCc-cccc---ceEEEE
Q 023019          246 SSSIDAVHAGAAIHCWSSP-STGV---GVFFQV  274 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~  274 (288)
                      .++||+|++..+++++++. ...|   |++++.
T Consensus       132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            7889999999999998764 2333   777764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=7.7e-14  Score=121.46  Aligned_cols=111  Identities=19%  Similarity=0.242  Sum_probs=79.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC--CCCEEEEEecCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADISRLP  243 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~--~~~i~~~~~d~~~lp  243 (288)
                      .+.+.+.+...++.+|||+|||+|.++..|++.+.  +|+|+|+|+.|++.|+++....+ ..  .....+..+++..++
T Consensus        45 ~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          45 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccccccc
Confidence            34555666555678999999999999999999986  99999999999999999876541 10  112344455543221


Q ss_pred             ---CCCCccceEEec-cccccCCCccc-------cc----------ceEEEEecCcc
Q 023019          244 ---FASSSIDAVHAG-AAIHCWSSPST-------GV----------GVFFQVTLIIH  279 (288)
Q Consensus       244 ---~~~~sfD~V~~~-~vl~h~~d~~~-------~l----------G~lvi~t~~~~  279 (288)
                         ....+||+|++. .+++|++++..       +|          |.|++.....+
T Consensus       122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  178 (292)
T d1xvaa_         122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD  178 (292)
T ss_dssp             HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHH
Confidence               124689999975 69999987643       33          88888766543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.42  E-value=7.4e-13  Score=112.87  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=86.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+.+.+......+|||||||+|.++..++++.+..+++++|+ +.+++.+++++...+  ...++.++.+|+.+..  .
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~~--~  144 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPL--P  144 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCC--S
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhhc--c
Confidence            4555666666678999999999999999999998889999998 669999999988762  3578999999986532  3


Q ss_pred             CccceEEeccccccCCCcc--ccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~  277 (288)
                      .+||+|++.++|||+++++  ++|          |++++....
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            5799999999999998765  233          888887653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=4.4e-13  Score=112.74  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=84.7

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccc
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSID  250 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD  250 (288)
                      .+...+|.+|||+|||+|..+..+++.++.+.|+|+|+|+.|++.+++++...     .++..+.+|.... ++.+..+|
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccce
Confidence            45678899999999999999999999988889999999999999999986654     6788888888765 35677889


Q ss_pred             eEEeccccccCCCccccc----------ceEEEEec
Q 023019          251 AVHAGAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      ++++...++|.+++..++          |.++++..
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            989888999988887766          87887753

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=1.6e-12  Score=111.48  Aligned_cols=122  Identities=22%  Similarity=0.213  Sum_probs=97.5

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~  235 (288)
                      ....-..++...+..++...+|.+|||+|||+|.++..+++. ++.++|+++|+++.+++.|+++++..+  ...++.+.
T Consensus        83 ~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~  160 (266)
T d1o54a_          83 RTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIK  160 (266)
T ss_dssp             -CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEE
T ss_pred             CccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEE
Confidence            334455677889999999999999999999999999999987 567899999999999999999998862  24678888


Q ss_pred             EecCCCCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023019          236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       236 ~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~  286 (288)
                      ..|+.. .+....||.|+     .++++|..++          |++++..+....+.++.+
T Consensus       161 ~~d~~~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~  215 (266)
T d1o54a_         161 VRDISE-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLK  215 (266)
T ss_dssp             CCCGGG-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             eccccc-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHH
Confidence            888643 34567788875     5889999888          888888887666555543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.9e-12  Score=112.77  Aligned_cols=130  Identities=19%  Similarity=0.200  Sum_probs=96.6

Q ss_pred             HhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcC---
Q 023019          150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---  225 (288)
Q Consensus       150 wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~---  225 (288)
                      |...+-.....-..++...++.++...+|.+|||+|||+|.++..|++. ++.++|+++|+++.+++.|+++++..+   
T Consensus        71 ~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~  150 (324)
T d2b25a1          71 YVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW  150 (324)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhh
Confidence            3433433444556677888999999999999999999999999999987 677899999999999999999987531   


Q ss_pred             -----CCCCCCEEEEEecCCCCC--CCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHH
Q 023019          226 -----NFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDL  284 (288)
Q Consensus       226 -----g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el  284 (288)
                           .....++.+..+|+....  +++..||.|+.     .+++|..++          |.|++-.+.-..+..+
T Consensus       151 ~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  221 (324)
T d2b25a1         151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIEL  221 (324)
T ss_dssp             TTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             hhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence                 112468999999998764  45678999985     567776666          8888777655444433

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.40  E-value=5.7e-13  Score=110.47  Aligned_cols=100  Identities=17%  Similarity=0.087  Sum_probs=80.4

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~  251 (288)
                      .+..+||.+|||+|||+|..+..+++..+.++|+|+|+|+.|++.|+++++..     .++.++.+|+...+.....+|.
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCC
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccce
Confidence            35677899999999999999999999877779999999999999999998775     5899999999987665555555


Q ss_pred             EEe-ccccccCCCccccc----------ceEEEEec
Q 023019          252 VHA-GAAIHCWSSPSTGV----------GVFFQVTL  276 (288)
Q Consensus       252 V~~-~~vl~h~~d~~~~l----------G~lvi~t~  276 (288)
                      +.. ...+.|..++..++          |.+++.+.
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            533 34566766666665          88888764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=115.12  Aligned_cols=101  Identities=6%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC--CCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFA  245 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~--lp~~  245 (288)
                      .+...+. .+|.+|||||||+|..+..+++..+ .+|+|+|+|+.|++.|+++.+..    ..++.++..++..  .+++
T Consensus        45 ~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          45 ALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSC
T ss_pred             HHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----ccccccccccccccccccc
Confidence            3444444 3588999999999999999998764 58999999999999999998776    4677888877654  3567


Q ss_pred             CCccceEE-----eccccccCCCccccc----------ceEEEE
Q 023019          246 SSSIDAVH-----AGAAIHCWSSPSTGV----------GVFFQV  274 (288)
Q Consensus       246 ~~sfD~V~-----~~~vl~h~~d~~~~l----------G~lvi~  274 (288)
                      +++||.|+     +.+.++|++++..++          |+|++.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            78888887     578888988887766          777664

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=2.1e-12  Score=106.54  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~  255 (288)
                      +..|||||||+|.++..+++..|+..++|+|+++.++..|.+++...+   ..|+.++++|+..+.  ++++++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhccccc
Confidence            558999999999999999999999999999999999999999988872   578999999998775  788999999998


Q ss_pred             cccccCCC
Q 023019          256 AAIHCWSS  263 (288)
Q Consensus       256 ~vl~h~~d  263 (288)
                      +...|...
T Consensus       107 fp~P~~k~  114 (204)
T d2fcaa1         107 FSDPWPKK  114 (204)
T ss_dssp             SCCCCCSG
T ss_pred             cccccchh
Confidence            87766544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.33  E-value=6.7e-12  Score=107.07  Aligned_cols=106  Identities=11%  Similarity=0.116  Sum_probs=85.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      ..+.+.+......+|||||||+|.++..++++.|..+++++|+ +.+++.++++++..+  ...++.++.+|... +.+ 
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~-~~p-  145 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLP-  145 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCS-
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeeccc-ccc-
Confidence            3444555545567999999999999999999999889999998 789999999988762  35679999999875 333 


Q ss_pred             CccceEEeccccccCCCccc--cc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPST--GV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~--~l----------G~lvi~t~~  277 (288)
                      ..||+|++.++|||+++.+.  +|          |++++..+.
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            45999999999999987643  23          889988764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.32  E-value=4.3e-12  Score=105.37  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      ...+.+.+...++.+|||||||+|+.+..+++... .+|+++|.++.+++.|++++...+   ..++.++.+|+......
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGG
T ss_pred             HHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECccccCCcc
Confidence            46677888889999999999999999999998732 379999999999999999999873   68999999999887667


Q ss_pred             CCccceEEeccccccCCCccc-cc---ceEEEE
Q 023019          246 SSSIDAVHAGAAIHCWSSPST-GV---GVFFQV  274 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~  274 (288)
                      .+.||.|++..++.++|+.-. .|   |++++.
T Consensus       143 ~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            899999999999998875421 22   666654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-12  Score=114.20  Aligned_cols=103  Identities=10%  Similarity=0.017  Sum_probs=81.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCCCCCEEEEEec
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRAD  238 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~------~g~~~~~i~~~~~d  238 (288)
                      ....+.+.+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|+++.+..      -|....++.++++|
T Consensus       139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            356677788888899999999999999999988866668999999999999998876542      02335689999999


Q ss_pred             CCCCCCCCCccc--eEEeccccccCCCccccc
Q 023019          239 ISRLPFASSSID--AVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       239 ~~~lp~~~~sfD--~V~~~~vl~h~~d~~~~l  268 (288)
                      +.++++.+..+|  +|++ +.+.|.+++...+
T Consensus       219 ~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l  249 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFV-NNFAFGPEVDHQL  249 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHH
T ss_pred             ccccccccccCcceEEEE-cceecchHHHHHH
Confidence            999988776664  5554 5566777776666

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=111.37  Aligned_cols=101  Identities=13%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCC-------------------------
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-------------------------  230 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~-------------------------  230 (288)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++.... ....                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEP-GAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCT-TCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhcc-ccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            4578999999999998877776654 479999999999999999987541 0000                         


Q ss_pred             --CE-EEEEe----cCCCCCCCCCccceEEeccccccCCCc----cccc----------ceEEEEecCc
Q 023019          231 --NF-LLVRA----DISRLPFASSSIDAVHAGAAIHCWSSP----STGV----------GVFFQVTLII  278 (288)
Q Consensus       231 --~i-~~~~~----d~~~lp~~~~sfD~V~~~~vl~h~~d~----~~~l----------G~lvi~t~~~  278 (288)
                        .+ .....    +....++.+++||+|++.+++||+...    ..++          |.+++.++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence              00 11111    222346778999999999999999642    2333          8999888654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.26  E-value=3.2e-11  Score=99.31  Aligned_cols=78  Identities=21%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEec
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~  255 (288)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..|.+++...+   ..++.++.+|+..+.  ++++++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhccc
Confidence            558999999999999999999999999999999999999999988772   578999999998875  778999999875


Q ss_pred             ccc
Q 023019          256 AAI  258 (288)
Q Consensus       256 ~vl  258 (288)
                      +.-
T Consensus       109 fPd  111 (204)
T d1yzha1         109 FSD  111 (204)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=3e-11  Score=106.62  Aligned_cols=84  Identities=19%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|+++.+..  ....++.++.+|+.++++++++||+|++.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~--~~~~~i~~i~~~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELN--GFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHh--CccccceEEEeehhhccCcccceeEEEEE
Confidence            3588999999999999999999875 4899999997 778888887775  24578999999999999999999999997


Q ss_pred             cccccCCC
Q 023019          256 AAIHCWSS  263 (288)
Q Consensus       256 ~vl~h~~d  263 (288)
                      .+.+++..
T Consensus       113 ~~~~~~~~  120 (328)
T d1g6q1_         113 WMGYFLLY  120 (328)
T ss_dssp             CCBTTBST
T ss_pred             ecceeecc
Confidence            76665543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=2.7e-11  Score=98.95  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V  252 (288)
                      +..-.|++|||+|||+|.++..++..++ .+|+|+|+++.+++.|+++        ..++.++++|+.+++   ++||+|
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l~---~~fD~V  111 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEIS---GKYDTW  111 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGCC---CCEEEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc--------cccccEEEEehhhcC---CcceEE
Confidence            3444689999999999999988888876 4899999999999999987        457889999998874   689999


Q ss_pred             Eecc
Q 023019          253 HAGA  256 (288)
Q Consensus       253 ~~~~  256 (288)
                      +++=
T Consensus       112 i~NP  115 (197)
T d1ne2a_         112 IMNP  115 (197)
T ss_dssp             EECC
T ss_pred             EeCc
Confidence            9973

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=2.9e-11  Score=100.88  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             HHHHhhc--CCCCCCeEEEEcCccchHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCCCEEEEE
Q 023019          167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG------LFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVR  236 (288)
Q Consensus       167 ~~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~~------~~~~v~gvD~s~~~l~~A~~~~~~~~--g~~~~~i~~~~  236 (288)
                      ..+.+.|  ...++.+|||||||+|+++..+++..      ...+|+++|+++++++.|++++....  .....++.+..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            4555655  45679999999999999998888752      22489999999999999998865320  00135899999


Q ss_pred             ecCCCCCCCCCccceEEeccccccCCCccc-cc---ceEEEEe
Q 023019          237 ADISRLPFASSSIDAVHAGAAIHCWSSPST-GV---GVFFQVT  275 (288)
Q Consensus       237 ~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~t  275 (288)
                      +|+.+...+.+.||+|++..+++++|+.-. .|   |++++..
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence            999887767889999999999998875422 22   7776644

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=2.9e-11  Score=101.16  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCC
Q 023019          171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS  246 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~  246 (288)
                      +.+...+|.+|||+|||+|.++..+++. |+.++|+|+|+++.|++.++++++..     .++..+..|+...   +...
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~  141 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALV  141 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTC
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCcccccccc
Confidence            3456788999999999999999999987 67789999999999999999987664     5778888888643   3445


Q ss_pred             CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023019          247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI  277 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~  277 (288)
                      ..+|+|+.  .+.|..++..++          |.+++++..
T Consensus       142 ~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         142 PKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             CCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence            67888776  345555555444          888887654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7e-11  Score=103.34  Aligned_cols=92  Identities=16%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+.+.....++++|||||||+|.++..+++.|+ .+|+|+|.|+.|.. ++++....  ....++.++.+|+.++++++.
T Consensus        26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~--~~~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLN--KLEDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHT--TCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHh--CCCccceEEEeeHHHhcCccc
Confidence            344444445688999999999999999999886 58999999998865 44444443  235789999999999999899


Q ss_pred             ccceEEeccccccCCC
Q 023019          248 SIDAVHAGAAIHCWSS  263 (288)
Q Consensus       248 sfD~V~~~~vl~h~~d  263 (288)
                      +||+|++....+++..
T Consensus       102 ~~D~Ivse~~~~~~~~  117 (311)
T d2fyta1         102 KVDVIISEWMGYFLLF  117 (311)
T ss_dssp             CEEEEEECCCBTTBTT
T ss_pred             cceEEEEeeeeeeccc
Confidence            9999999766666543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=1.2e-10  Score=95.60  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             CCCcHHHHHHH---HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEE
Q 023019          159 FPGPEKEFELM---KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (288)
Q Consensus       159 ~~~~~~~~~~l---~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~  235 (288)
                      |++|......+   ........|.+|||+|||+|.++..++.++. ..|+|+|+++.+++.|+++++..    ..+..++
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~~   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVF   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc----CCCceEE
Confidence            44554443332   2334445688999999999999999888875 58999999999999999998877    4678899


Q ss_pred             EecCCCCCCCCCccceEEecccc
Q 023019          236 RADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       236 ~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      .+|+..+   ++.||+|+++--.
T Consensus       100 ~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         100 IGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             ESCGGGC---CCCCSEEEECCCC
T ss_pred             ECchhhh---CCcCcEEEEcCcc
Confidence            9998776   4679999986543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=4.9e-11  Score=104.65  Aligned_cols=84  Identities=13%  Similarity=0.240  Sum_probs=68.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  255 (288)
                      .++++|||||||+|.++..+++.|+ .+|+|+|.|+.+ ..+++++...  ....++.++.+|+.+++++.++||+|++.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n--~~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKAN--KLDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHT--TCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHh--CCccccceEeccHHHcccccceeEEEeee
Confidence            3588999999999999999999876 489999999854 6666666554  23567999999999999999999999997


Q ss_pred             cccccCCC
Q 023019          256 AAIHCWSS  263 (288)
Q Consensus       256 ~vl~h~~d  263 (288)
                      .+.+++..
T Consensus       108 ~~~~~l~~  115 (316)
T d1oria_         108 WMGYCLFY  115 (316)
T ss_dssp             CCBBTBTB
T ss_pred             eeeeeecc
Confidence            76666543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1e-10  Score=100.22  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      +.+..... ..+.+|||+|||+|..+..++...+..+|+++|+|+.+++.|+++++..+   ..++.++++|+.+ ++.+
T Consensus        99 ~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~~~-~~~~  173 (274)
T d2b3ta1          99 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFS-ALAG  173 (274)
T ss_dssp             HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTG-GGTT
T ss_pred             hhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccccc-ccCC
Confidence            33334333 34678999999999999999999988999999999999999999998872   3579999999875 4556


Q ss_pred             CccceEEec
Q 023019          247 SSIDAVHAG  255 (288)
Q Consensus       247 ~sfD~V~~~  255 (288)
                      .+||+|+++
T Consensus       174 ~~fDlIvsN  182 (274)
T d2b3ta1         174 QQFAMIVSN  182 (274)
T ss_dssp             CCEEEEEEC
T ss_pred             CceeEEEec
Confidence            799999997

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=5.5e-11  Score=96.83  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---  243 (288)
                      +.+++++.+.++..+||++||+|..+..+.+..++++|+|+|.++.|++.|+++++..    ..++.++.+++.++.   
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHHH
Confidence            5667888888999999999999999999999988889999999999999999998876    578999999987653   


Q ss_pred             --CCCCccceEEecccc--ccCCCccccc-----------------ceEEEEecCcccH
Q 023019          244 --FASSSIDAVHAGAAI--HCWSSPSTGV-----------------GVFFQVTLIIHVV  281 (288)
Q Consensus       244 --~~~~sfD~V~~~~vl--~h~~d~~~~l-----------------G~lvi~t~~~~~l  281 (288)
                        +..++||.|+....+  .++.++.+-+                 |.+++.+|.....
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed  147 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED  147 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence              446789999986554  2233333333                 9999888765433

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-11  Score=105.23  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC-------------------------
Q 023019          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-------------------------  229 (288)
Q Consensus       175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~-------------------------  229 (288)
                      ...+.+|||||||+|.+....+.... .+|+|+|+|+.|++.++++++...+...                         
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            34588999999999987655444433 3899999999999999988765411000                         


Q ss_pred             --CCEEEEEecCCC------CCCCCCccceEEeccccccCC----Cccccc----------ceEEEEecCc
Q 023019          230 --ENFLLVRADISR------LPFASSSIDAVHAGAAIHCWS----SPSTGV----------GVFFQVTLII  278 (288)
Q Consensus       230 --~~i~~~~~d~~~------lp~~~~sfD~V~~~~vl~h~~----d~~~~l----------G~lvi~t~~~  278 (288)
                        ........|+..      .++..++||+|++.++|||++    ++.+++          |.|++.++..
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence              001234445532      235567899999999999996    233443          8888876543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=8e-10  Score=94.07  Aligned_cols=82  Identities=20%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~  247 (288)
                      .+...+.  +|.+|||+|||+|.++..+++.+. ++|+++|+++.+++.++++++..  ....++.++++|+.+++. .+
T Consensus       100 ri~~~~~--~g~~VlD~~aG~G~~~l~~a~~~~-~~V~avd~n~~a~~~~~~N~~~n--~l~~~v~~~~~D~~~~~~-~~  173 (260)
T d2frna1         100 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG-EN  173 (260)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC-CS
T ss_pred             HHHhhcC--CccEEEECcceEcHHHHHHHHhCC-cEEEEecCCHHHHHHHHHHHHHh--CCCceEEEEEcchHHhcc-CC
Confidence            4455544  489999999999999999998874 59999999999999999999886  234679999999998764 57


Q ss_pred             ccceEEec
Q 023019          248 SIDAVHAG  255 (288)
Q Consensus       248 sfD~V~~~  255 (288)
                      .||.|++.
T Consensus       174 ~~D~Ii~~  181 (260)
T d2frna1         174 IADRILMG  181 (260)
T ss_dssp             CEEEEEEC
T ss_pred             CCCEEEEC
Confidence            89999875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.96  E-value=5.2e-10  Score=87.56  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~  255 (288)
                      .|.+|||+|||+|.++..++.+|. .+|+++|.++.+++.++++++..+  ...++.++++|+.. ++...++||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccccccccccceeEec
Confidence            588999999999999999988887 599999999999999999998762  34669999999876 34557889999984

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.94  E-value=2.3e-09  Score=89.80  Aligned_cols=84  Identities=15%  Similarity=0.279  Sum_probs=70.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      ..+.+.+.+...++++|||||||+|.++..+++.+.  +|+++|+++.+++.++++...     ..++.++.+|+..+++
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~~~   81 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhccc
Confidence            356778888888899999999999999999999876  999999999999999988654     4789999999998877


Q ss_pred             CCCccceEEec
Q 023019          245 ASSSIDAVHAG  255 (288)
Q Consensus       245 ~~~sfD~V~~~  255 (288)
                      +......|+++
T Consensus        82 ~~~~~~~vv~N   92 (235)
T d1qama_          82 PKNQSYKIFGN   92 (235)
T ss_dssp             CSSCCCEEEEE
T ss_pred             cccccceeeee
Confidence            65544455553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=4.3e-09  Score=92.31  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----C
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----L  242 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----l  242 (288)
                      ..+..++.  ++.+|||++||+|.++..++..+. .+|+++|+|+.+++.|++++..+ | ...++.++++|+.+    +
T Consensus       137 ~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n-g-l~~~~~~~~~d~~~~~~~~  211 (324)
T d2as0a2         137 LALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN-G-VEDRMKFIVGSAFEEMEKL  211 (324)
T ss_dssp             HHHGGGCC--TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-T-CGGGEEEEESCHHHHHHHH
T ss_pred             HHHHhhcC--CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc-C-CCccceeeechhhhhhHHH
Confidence            33444443  488999999999999999998875 58999999999999999999887 2 23578999999764    3


Q ss_pred             CCCCCccceEEec
Q 023019          243 PFASSSIDAVHAG  255 (288)
Q Consensus       243 p~~~~sfD~V~~~  255 (288)
                      +....+||+|++.
T Consensus       212 ~~~~~~fD~Vi~D  224 (324)
T d2as0a2         212 QKKGEKFDIVVLD  224 (324)
T ss_dssp             HHTTCCEEEEEEC
T ss_pred             HhccCCCCchhcC
Confidence            3456789999984

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=3.1e-09  Score=93.03  Aligned_cols=74  Identities=23%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCCCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~sfD~V  252 (288)
                      ++.+|||++||+|.++..++..+.  +|+++|+|+.+++.|+++++.. |  ..++.++++|+.+    ++...++||+|
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~n-g--l~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLN-G--LGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHT-T--CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHc-C--CCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            488999999999999999887654  9999999999999999999987 2  4579999999865    34456789999


Q ss_pred             Eec
Q 023019          253 HAG  255 (288)
Q Consensus       253 ~~~  255 (288)
                      ++.
T Consensus       220 i~D  222 (318)
T d1wxxa2         220 VLD  222 (318)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            985

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.7e-09  Score=87.35  Aligned_cols=81  Identities=11%  Similarity=0.003  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC------CCCCccc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASSSID  250 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~~sfD  250 (288)
                      +..++||||||+|..+..++.+.++++++|+|+|+.+++.|+++++..  ....++.++..+....-      ..+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n--~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh--CCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            356899999999999999999877789999999999999999999886  24567888876654321      2356899


Q ss_pred             eEEeccccc
Q 023019          251 AVHAGAAIH  259 (288)
Q Consensus       251 ~V~~~~vl~  259 (288)
                      +|+|+=-..
T Consensus       139 ~ivsNPPY~  147 (250)
T d2h00a1         139 FCMCNPPFF  147 (250)
T ss_dssp             EEEECCCCC
T ss_pred             EEEecCccc
Confidence            999976554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=2.8e-09  Score=84.97  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC--CCCCCCCccceEE
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFASSSIDAVH  253 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~--~lp~~~~sfD~V~  253 (288)
                      ..+.+|||+|||+|.++..++.++.  +++++|.++.+++.++++++.. +. ..++....+|..  .......+||+|+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~-~~-~~~v~~~~~d~~~~~~~~~~~~fD~If  115 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT-GL-GARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH-TC-CCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhh-cc-ccceeeeehhcccccccccCCccceeE
Confidence            3478999999999999999999887  8999999999999999999887 21 233433333321  1234457899999


Q ss_pred             ec
Q 023019          254 AG  255 (288)
Q Consensus       254 ~~  255 (288)
                      +.
T Consensus       116 ~D  117 (171)
T d1ws6a1         116 MA  117 (171)
T ss_dssp             EC
T ss_pred             Ec
Confidence            84

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.7e-09  Score=96.01  Aligned_cols=103  Identities=9%  Similarity=-0.017  Sum_probs=72.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCCCCEEE-EEe
Q 023019          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKENFLL-VRA  237 (288)
Q Consensus       165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~------g~~~~~i~~-~~~  237 (288)
                      .+..+++.+..+++.+|||||||+|.++..++...+..+++|+|+|+.|++.|+++.+..+      +.....+.+ ..+
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            4667778888889999999999999999999988654689999999999999999876420      111223333 344


Q ss_pred             cCCCCCCCC---CccceEEeccccccCCCccccc
Q 023019          238 DISRLPFAS---SSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       238 d~~~lp~~~---~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      +....++.+   ..+|+|+++. +.|.++....|
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L  316 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKV  316 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHH
T ss_pred             chhhccccccccccceEEEEec-ccCchHHHHHH
Confidence            444433211   3467787654 55677766666

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.75  E-value=4.2e-10  Score=94.95  Aligned_cols=85  Identities=13%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.+...++..|||||||+|.++..+++.+.  +|+++|+++.+++.+++++..     ..++.++.+|+.+++++
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~~~   90 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCC
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccccc
Confidence            46788888888899999999999999999999987  999999999999988876543     36899999999999888


Q ss_pred             CCccceEEeccc
Q 023019          246 SSSIDAVHAGAA  257 (288)
Q Consensus       246 ~~sfD~V~~~~v  257 (288)
                      ...++.|+++.-
T Consensus        91 ~~~~~~vv~NLP  102 (245)
T d1yuba_          91 NKQRYKIVGNIP  102 (245)
T ss_dssp             CSSEEEEEEECC
T ss_pred             cceeeeEeeeee
Confidence            777777777653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.74  E-value=1.8e-08  Score=87.89  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCCccceE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDAV  252 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~sfD~V  252 (288)
                      +|.+|||+.||+|.++..++..+. ..|+++|+|+.+++.|+++++.+ +....++.++++|+.+.    .-...+||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n-~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHh-cccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            488999999999999998887765 58999999999999999999887 44456899999998542    2245689999


Q ss_pred             Eec
Q 023019          253 HAG  255 (288)
Q Consensus       253 ~~~  255 (288)
                      ++.
T Consensus       222 i~D  224 (317)
T d2b78a2         222 IID  224 (317)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            984

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.2e-08  Score=84.22  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCC
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA  245 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~  245 (288)
                      +.+.......+..+|||+|||+|..+..+++. ++++|+++|+|+.+++.|+++++..+  ...++.+..+|+.+. +..
T Consensus       100 ~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~~~~~~~~  176 (271)
T d1nv8a_         100 ELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEPFKEK  176 (271)
T ss_dssp             HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGGGGGG
T ss_pred             hhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcC--CCceeEEeecccccccccc
Confidence            33344433344568999999999999888865 56899999999999999999998862  345678888888753 334


Q ss_pred             CCccceEEec
Q 023019          246 SSSIDAVHAG  255 (288)
Q Consensus       246 ~~sfD~V~~~  255 (288)
                      .++||+|+++
T Consensus       177 ~~~fDlIVsN  186 (271)
T d1nv8a_         177 FASIEMILSN  186 (271)
T ss_dssp             TTTCCEEEEC
T ss_pred             cCcccEEEEc
Confidence            4789999997

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.67  E-value=3e-08  Score=83.32  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=74.0

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       167 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.+.+... .....+|||||||+|.++..++++.|..+++..|+ +..++.+         ....++.++.+|+.+ +.+
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---------~~~~ri~~~~gd~~~-~~p  138 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA---------PPLSGIEHVGGDMFA-SVP  138 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---------CCCTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc---------CCCCCeEEecCCccc-ccc
Confidence            34444444 34467899999999999999999999999999998 3343322         125789999999864 333


Q ss_pred             CCccceEEeccccccCCCccccc------------ceEEEEecC
Q 023019          246 SSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLI  277 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~  277 (288)
                        ..|+++..++||+++|.+...            |++++..+.
T Consensus       139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence              359999999999998865332            889998864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.65  E-value=2.5e-08  Score=86.38  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCCccce
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA  251 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~sfD~  251 (288)
                      .++.+|||+.||+|.++..++..|.  +|++||.|+.+++.|+++++.+ |....++.++++|+...    ......||+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            3478999999999999999998876  8999999999999999999887 44456799999998643    223578999


Q ss_pred             EEe
Q 023019          252 VHA  254 (288)
Q Consensus       252 V~~  254 (288)
                      |++
T Consensus       208 Iil  210 (309)
T d2igta1         208 ILT  210 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.2e-08  Score=80.48  Aligned_cols=76  Identities=12%  Similarity=0.097  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~  255 (288)
                      .+.+|||++||+|.++..++.+|. ..|+.+|.++.+++.++++++..+   ..+..++.+|+.. +......||+|++.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhcc---ccceeeeeecccccccccccccCEEEEc
Confidence            478999999999999999999987 589999999999999999988762   4678889998764 33456789999995


Q ss_pred             c
Q 023019          256 A  256 (288)
Q Consensus       256 ~  256 (288)
                      =
T Consensus       119 P  119 (183)
T d2fpoa1         119 P  119 (183)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.58  E-value=6.1e-08  Score=77.73  Aligned_cols=88  Identities=19%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             HHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-
Q 023019          165 EFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  242 (288)
Q Consensus       165 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-  242 (288)
                      ..+.+..++. ...+.+|||++||+|.++..++.+|. ..|+++|.++.+++.++++++..+  ...++.++++|+... 
T Consensus        28 vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          28 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRAL  104 (182)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhh
Confidence            3455556554 24689999999999999999999987 589999999999999999988761  245799999998642 


Q ss_pred             ---CCCCCccceEEec
Q 023019          243 ---PFASSSIDAVHAG  255 (288)
Q Consensus       243 ---p~~~~sfD~V~~~  255 (288)
                         .-....||+|++.
T Consensus       105 ~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             HHHHHTTCCEEEEEEC
T ss_pred             hhhcccCCCcceEEec
Confidence               1235679999984

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.3e-07  Score=81.93  Aligned_cols=84  Identities=17%  Similarity=0.259  Sum_probs=71.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---  242 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---  242 (288)
                      ++.+.+++...++.+|||+-||.|.++..|++.+.  +|+|+|.++.+++.|+++++..+   ..++.++.+|.++.   
T Consensus       201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~~~~~  275 (358)
T d1uwva2         201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTK  275 (358)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSS
T ss_pred             HHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhhhhhh
Confidence            55666777777789999999999999999998876  99999999999999999998873   67899999998753   


Q ss_pred             -CCCCCccceEEe
Q 023019          243 -PFASSSIDAVHA  254 (288)
Q Consensus       243 -p~~~~sfD~V~~  254 (288)
                       +.....+|+|+.
T Consensus       276 ~~~~~~~~d~vil  288 (358)
T d1uwva2         276 QPWAKNGFDKVLL  288 (358)
T ss_dssp             SGGGTTCCSEEEE
T ss_pred             hhhhhccCceEEe
Confidence             233467999987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=4.6e-08  Score=80.52  Aligned_cols=86  Identities=8%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C---
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P---  243 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p---  243 (288)
                      +...+...+..+|||||||+|..+..+++.. .+++++++|+++.+++.|+++++..+  ...+++++.+|+.+. +   
T Consensus        48 L~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e~l~~l~  125 (214)
T d2cl5a1          48 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQDLIPQLK  125 (214)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGHH
T ss_pred             HHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccccccchh
Confidence            3333333345799999999999999999874 35799999999999999999998862  346799999998653 2   


Q ss_pred             --CCCCccceEEecc
Q 023019          244 --FASSSIDAVHAGA  256 (288)
Q Consensus       244 --~~~~sfD~V~~~~  256 (288)
                        +..+.||+|+...
T Consensus       126 ~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         126 KKYDVDTLDMVFLDH  140 (214)
T ss_dssp             HHSCCCCEEEEEECS
T ss_pred             hcccccccceeeecc
Confidence              3457899999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.48  E-value=1.1e-07  Score=79.83  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      ..+|||||||+|.++..++++.|..++++.|. +..++.+.         ...++.++.+|+.+. .  ..+|+++..++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~rv~~~~gD~f~~-~--p~aD~~~l~~v  147 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---------GSNNLTYVGGDMFTS-I--PNADAVLLKYI  147 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CBTTEEEEECCTTTC-C--CCCSEEEEESC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---------ccCceEEEecCcccC-C--CCCcEEEEEee
Confidence            46899999999999999999999999999998 44443322         257899999998753 2  25799999999


Q ss_pred             cccCCCccc
Q 023019          258 IHCWSSPST  266 (288)
Q Consensus       258 l~h~~d~~~  266 (288)
                      ||+++|.+.
T Consensus       148 LHdw~d~~~  156 (244)
T d1fp2a2         148 LHNWTDKDC  156 (244)
T ss_dssp             GGGSCHHHH
T ss_pred             cccCChHHH
Confidence            999998753

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.2e-07  Score=76.80  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      .+.+.+.....++..|||||+|.|.++..+++.+.  +|+++|+++.+++..++++...  ....++.++.+|+...+++
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~--~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhh--ccccchhhhHHHHhhhhhh
Confidence            46677777777899999999999999999999987  9999999999999999987653  1236899999999887654


Q ss_pred             CCccceEEecc
Q 023019          246 SSSIDAVHAGA  256 (288)
Q Consensus       246 ~~sfD~V~~~~  256 (288)
                        .++.|+++.
T Consensus        86 --~~~~vV~NL   94 (278)
T d1zq9a1          86 --FFDTCVANL   94 (278)
T ss_dssp             --CCSEEEEEC
T ss_pred             --hhhhhhcch
Confidence              345666653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=3.9e-07  Score=72.86  Aligned_cols=111  Identities=16%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---  243 (288)
                      +.+++.+.+.+++.++|..+|.|..+..+.+...  +|+|+|.++.+++.|++.   .    ..++.+++++..++.   
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~---~----~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL---H----LPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHT---C----CTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhc---c----ccceeEeehHHHHHHHHH
Confidence            5566778888899999999999999999998765  999999999999999864   1    468999999887653   


Q ss_pred             --CCCCccceEEecccc--ccCCCccccc-----------------ceEEEEecCcccHHHHHh
Q 023019          244 --FASSSIDAVHAGAAI--HCWSSPSTGV-----------------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       244 --~~~~sfD~V~~~~vl--~h~~d~~~~l-----------------G~lvi~t~~~~~l~el~~  286 (288)
                        +..+.+|.|+....+  .++.++.+-+                 |.+++.++.......+++
T Consensus        79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~  142 (182)
T d1wg8a2          79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR  142 (182)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHH
Confidence              345689999985544  3444544444                 999998886554444443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-07  Score=77.11  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=69.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-
Q 023019          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-  243 (288)
                      ..+.........++|||||||+|+.+.++++..+ +++++.+|.++...+.|+++++.. | ...++.++.+|+.+. + 
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a-g-~~~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-E-AEHKIDLRLKPALETLDE  126 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-T-CTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc-C-ccceEEEEEeehhhcchh
Confidence            3344333444478999999999999999998743 579999999999999999999887 2 357899999997542 1 


Q ss_pred             ----CCCCccceEEecc
Q 023019          244 ----FASSSIDAVHAGA  256 (288)
Q Consensus       244 ----~~~~sfD~V~~~~  256 (288)
                          ...++||+|+...
T Consensus       127 ~~~~~~~~~fD~ifiD~  143 (219)
T d2avda1         127 LLAAGEAGTFDVAVVDA  143 (219)
T ss_dssp             HHHTTCTTCEEEEEECS
T ss_pred             hhhhcccCCccEEEEeC
Confidence                2457899999964

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=6.2e-07  Score=72.32  Aligned_cols=90  Identities=10%  Similarity=0.045  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCccch----HHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHH------------------HhcCCCC-
Q 023019          176 VLGGNIIDASCGSGL----FSRIFAKS----GLFSLVVALDYSENMLKQCYEFV------------------QQESNFP-  228 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~----~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~------------------~~~~g~~-  228 (288)
                      .+..+||++|||+|.    ++..+.+.    ....+++|+|+|+.+++.|++-.                  ...++.. 
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            345689999999997    33444443    22357999999999999998432                  1110000 


Q ss_pred             ---------CCCEEEEEecCCCC-CCCCCccceEEeccccccCCCcc
Q 023019          229 ---------KENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSPS  265 (288)
Q Consensus       229 ---------~~~i~~~~~d~~~l-p~~~~sfD~V~~~~vl~h~~d~~  265 (288)
                               ...+.+...+.... +...+.||+|+|.+||.+++++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~  149 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT  149 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH
Confidence                     01234455555443 23457899999999999998763

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.8e-07  Score=78.74  Aligned_cols=72  Identities=7%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023019          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (288)
Q Consensus       166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~  244 (288)
                      .+.+.+.+...++..|||||||.|.++..+++.+.  +|+++|+++.+++..+++...     ..++.++.+|+..+++
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhhcc
Confidence            46777888877899999999999999999999876  999999999999999875433     3689999999987754

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.25  E-value=1.9e-07  Score=60.01  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=39.5

Q ss_pred             ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      .-+++++||.|+++|....         ..+.+.|+.|+..|++.+|++.++.+.
T Consensus         6 ~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~~~YPI~dgIPvLL~de   51 (59)
T d2jnya1           6 QLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE   51 (59)
T ss_dssp             GGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHHHhcCCCCCCEeEEeC---------CCCEEEcCccCccccccCCccccCHHH
Confidence            3578899999999998753         356899999999999999999998764

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.24  E-value=1.9e-07  Score=59.85  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      -+++++||.|+++|....         ..+.+.|..|+..|++.+|++.++.+.
T Consensus         3 LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~laYPI~dGIPvlL~~e   47 (59)
T d2pk7a1           3 LLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   47 (59)
T ss_dssp             GGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hHhheECCCCCCcceEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            468899999999998754         356899999999999999999998764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.23  E-value=2.5e-06  Score=74.15  Aligned_cols=95  Identities=11%  Similarity=0.125  Sum_probs=70.5

Q ss_pred             CCCcHHHHHHHH----hhcCCCCCCeEEEEcCccchHHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 023019          159 FPGPEKEFELMK----GYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQESNFPK  229 (288)
Q Consensus       159 ~~~~~~~~~~l~----~~l~~~~~~~VLDiGcG~G~~~~~l~~~-----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~  229 (288)
                      +++|....+.+.    .++...++.+|||.+||+|.++..+.++     .....++|+|+++.+++.|+.++...    .
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----~  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----R  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----T
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----h
Confidence            456766544443    3445666789999999999999888653     23357999999999999999888776    4


Q ss_pred             CCEEEEEecCCCCCCCCCccceEEecccc
Q 023019          230 ENFLLVRADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       230 ~~i~~~~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      .......+|..... ...+||+|+++--+
T Consensus       171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy  198 (328)
T d2f8la1         171 QKMTLLHQDGLANL-LVDPVDVVISDLPV  198 (328)
T ss_dssp             CCCEEEESCTTSCC-CCCCEEEEEEECCC
T ss_pred             hhhhhhcccccccc-ccccccccccCCCC
Confidence            56677788766443 35789999998544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=1.5e-06  Score=69.46  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC---CCCCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RLPFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~---~lp~~~~sfD~V~  253 (288)
                      .+.+|||+.||+|.++.++..+|. ..|+.||.+...++..+++++.. +.......+...|..   ........||+|+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l-~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhh-cccccccccccccccccccccccCCcccEEE
Confidence            477999999999999999999997 69999999999999999998876 333445666666643   2233456799999


Q ss_pred             ec
Q 023019          254 AG  255 (288)
Q Consensus       254 ~~  255 (288)
                      +.
T Consensus       121 lD  122 (183)
T d2ifta1         121 LD  122 (183)
T ss_dssp             EC
T ss_pred             ec
Confidence            84

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.21  E-value=7.5e-07  Score=74.43  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v  257 (288)
                      ..+|||||||+|.++..++++.|+.++++.|+.+ .++.++         ...++.+..+|+.+ +.+  ..|+++..++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~---------~~~r~~~~~~d~~~-~~P--~ad~~~l~~v  148 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP---------SYPGVEHVGGDMFV-SIP--KADAVFMKWI  148 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC---------CCTTEEEEECCTTT-CCC--CCSCEECSSS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc---------cCCceEEecccccc-cCC--CcceEEEEEE
Confidence            5689999999999999999999999999999965 332222         25789999999864 333  2578889999


Q ss_pred             cccCCCccccc------------ceEEEEecC
Q 023019          258 IHCWSSPSTGV------------GVFFQVTLI  277 (288)
Q Consensus       258 l~h~~d~~~~l------------G~lvi~t~~  277 (288)
                      +|++++.+...            |++++....
T Consensus       149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             eecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            99998754432            888887653

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.18  E-value=2.2e-07  Score=59.66  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=39.0

Q ss_pred             cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023019           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (288)
Q Consensus        68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (288)
                      -+++++||.|+++|....         ..+.+.|..|+..|++.+|++.++.+.
T Consensus         4 LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~l~YPI~dGIPvlL~~e   48 (59)
T d2hf1a1           4 FLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   48 (59)
T ss_dssp             CEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhhhhcCCCCCCeeeEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            467899999999998753         356899999999999999999998764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=6.1e-06  Score=66.98  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  256 (288)
                      ++.+|+|+|+|.|.-+..++-..|..+++.+|.+..-+...++.....+   ..++.++...++++. .+.+||+|++..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~-~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhc-cccccceehhhh
Confidence            3579999999999999999988888899999999998888888776652   468999999999875 356899999866


Q ss_pred             c
Q 023019          257 A  257 (288)
Q Consensus       257 v  257 (288)
                      +
T Consensus       141 ~  141 (207)
T d1jsxa_         141 F  141 (207)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.10  E-value=2.3e-06  Score=70.62  Aligned_cols=79  Identities=10%  Similarity=0.040  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C------CCCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P------FASS  247 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p------~~~~  247 (288)
                      ....+|||||+++|+-+.++++..+ +++++.+|.++...+.|++++++. | ...++.++.+++.+. +      ...+
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~-g-~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-G-VDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-T-CGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh-c-cccceeeeehHHHHHHHHHHhccccCC
Confidence            3467999999999999999998754 579999999999999999999887 2 356799999998642 2      1356


Q ss_pred             ccceEEecc
Q 023019          248 SIDAVHAGA  256 (288)
Q Consensus       248 sfD~V~~~~  256 (288)
                      +||+|+...
T Consensus       136 ~fD~iFiDa  144 (227)
T d1susa1         136 SYDFIFVDA  144 (227)
T ss_dssp             CBSEEEECS
T ss_pred             ceeEEEecc
Confidence            899999954

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.06  E-value=3.9e-06  Score=68.25  Aligned_cols=87  Identities=17%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023019          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (288)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d  238 (288)
                      ++|....+.+.+.+...++.+|||.|||+|.++..+.+. .....++|+|+++..+..+            ....++.+|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------ccceeeeee
Confidence            456677788889888888999999999999999888765 3335799999998654332            345677777


Q ss_pred             CCCCCCCCCccceEEeccccc
Q 023019          239 ISRLPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       239 ~~~lp~~~~sfD~V~~~~vl~  259 (288)
                      ..... ....||+|+++-...
T Consensus        70 ~~~~~-~~~~fd~ii~npP~~   89 (223)
T d2ih2a1          70 FLLWE-PGEAFDLILGNPPYG   89 (223)
T ss_dssp             GGGCC-CSSCEEEEEECCCCC
T ss_pred             hhccc-cccccceecccCccc
Confidence            76554 347899999976543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=1.7e-05  Score=71.36  Aligned_cols=117  Identities=17%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             cchhhhhHHHHhhhhhc-----CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-------------C
Q 023019          140 PFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------F  201 (288)
Q Consensus       140 ~~~s~~~~~~wr~~~~~-----~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-------------~  201 (288)
                      +.++..|+...++....     +.|++|....+.+.+.+.+.++.+|+|-+||+|.++..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            34556677655543211     23899999999999999888899999999999999988766421             1


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023019          202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (288)
Q Consensus       202 ~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl  258 (288)
                      ..++|+|+++.+...|+-++... |.......+..+|....+ ....||+|+++=-+
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~-g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPf  254 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLH-GIGTDRSPIVCEDSLEKE-PSTLVDVILANPPF  254 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHT-TCCSSCCSEEECCTTTSC-CSSCEEEEEECCCS
T ss_pred             hhhhhhhccHHHHHHHHhhhhhc-CCccccceeecCchhhhh-cccccceEEecCCC
Confidence            25999999999999999887766 333345567777776543 45789999997655

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=2.8e-05  Score=64.24  Aligned_cols=83  Identities=18%  Similarity=0.085  Sum_probs=64.4

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCc
Q 023019          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSS  248 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~s  248 (288)
                      ++....+.+|+|||+|.|.-+..++-..|+.+++-+|.+..-+...+......+   ..++.++...++.+...   .++
T Consensus        65 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~---L~n~~i~~~R~E~~~~~~~~~~~  141 (239)
T d1xdza_          65 YVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRES  141 (239)
T ss_dssp             TSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTC
T ss_pred             hhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC---CCCcEEEeehhhhcccccccccc
Confidence            333334679999999999999999888888899999999988877777666552   46888888888765422   368


Q ss_pred             cceEEeccc
Q 023019          249 IDAVHAGAA  257 (288)
Q Consensus       249 fD~V~~~~v  257 (288)
                      ||+|++..+
T Consensus       142 ~D~v~sRAv  150 (239)
T d1xdza_         142 YDIVTARAV  150 (239)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEhhh
Confidence            999999754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.00011  Score=57.98  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CCC
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  246 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~  246 (288)
                      .++.+|||+||+.|.|+..+.+. +....++++|+.+-              .+..++.++.+|+....        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeecccccchhhhhhhhhccC
Confidence            46889999999999999998876 45579999998761              12578899999987632        245


Q ss_pred             CccceEEeccccccCCCc--cc--cc-----------------ceEEEEecCcccHHHHHh
Q 023019          247 SSIDAVHAGAAIHCWSSP--ST--GV-----------------GVFFQVTLIIHVVEDLAV  286 (288)
Q Consensus       247 ~sfD~V~~~~vl~h~~d~--~~--~l-----------------G~lvi~t~~~~~l~el~~  286 (288)
                      +.+|+|++-.+..-..+.  +.  .+                 |.|++-.|......+|..
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~  147 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR  147 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHH
Confidence            689999997764432211  00  00                 999999998777666654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=3.9e-05  Score=65.46  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~  254 (288)
                      ...+||-||.|.|..++.+.+..+..+|+.+|+++.+++.|++.+.... +...+++.++.+|+... .-.+++||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            3679999999999999999987665799999999999999999875421 12357899999998643 334578999997


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus       169 D~  170 (295)
T d1inla_         169 DS  170 (295)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=1.3e-05  Score=69.15  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCCCEEEEEecCCCC-CCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~--g~~~~~i~~~~~d~~~l-p~~~~sfD~V~  253 (288)
                      ..++||.||.|.|..+..+.+..+..+|+.+|+++.+++.|++.+....  ....++++++.+|+.+. .-.+++||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            4679999999999999999887666799999999999999999874320  11357899999998753 33457899999


Q ss_pred             ecc
Q 023019          254 AGA  256 (288)
Q Consensus       254 ~~~  256 (288)
                      ...
T Consensus       157 ~D~  159 (312)
T d1uira_         157 IDL  159 (312)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.69  E-value=1.8e-05  Score=67.07  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCEEEEEecCCCCCCCCCc
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRADISRLPFASSS  248 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-------g~~~~~i~~~~~d~~~lp~~~~s  248 (288)
                      ....+||.||.|.|..+..+.+... .+|+.+|+++.+++.|++.+....       ....+++.++.+|+...--.+++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            3467999999999999999887654 689999999999999998764321       01257899999998643224578


Q ss_pred             cceEEecc
Q 023019          249 IDAVHAGA  256 (288)
Q Consensus       249 fD~V~~~~  256 (288)
                      ||+|+...
T Consensus       150 yDvIi~D~  157 (276)
T d1mjfa_         150 FDVIIADS  157 (276)
T ss_dssp             EEEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999743

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=0.0001  Score=62.08  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISR-LPFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-~~~~~i~~~~~d~~~-lp~~~~sfD~V~~  254 (288)
                      ...+||-||.|.|..++.+.+..+..+|+.+|+++.+++.|++.+....+ ...+++.++.+|+.. +.-.+++||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            46799999999999999999876556999999999999999998754211 236789999999864 2334578999998


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus       155 D~  156 (274)
T d1iy9a_         155 DS  156 (274)
T ss_dssp             SC
T ss_pred             cC
Confidence            64

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.63  E-value=0.00015  Score=62.24  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023019          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~  246 (288)
                      .....+.+.+|.+|||+.+|.|.=+..+++. ...+.+++.|.++.-++..+++++..+   ..++.....|...++..+
T Consensus       107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~~~~~~  183 (313)
T d1ixka_         107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGELN  183 (313)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGGC
T ss_pred             chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhcccccccccccccccc
Confidence            3445567788999999999999977777665 334689999999999999999998873   567878888887777677


Q ss_pred             CccceEEe
Q 023019          247 SSIDAVHA  254 (288)
Q Consensus       247 ~sfD~V~~  254 (288)
                      ..||.|+.
T Consensus       184 ~~fD~ILv  191 (313)
T d1ixka_         184 VEFDKILL  191 (313)
T ss_dssp             CCEEEEEE
T ss_pred             ccccEEEE
Confidence            89999998

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00018  Score=61.18  Aligned_cols=83  Identities=16%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC--
Q 023019          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS--  246 (288)
Q Consensus       170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~--  246 (288)
                      ...+.+.++.+|||+.+|.|.-+..+++. +....++++|+++.-++..+++++..+   ..++.+...|+..++..+  
T Consensus        87 ~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~~~  163 (293)
T d2b9ea1          87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDPR  163 (293)
T ss_dssp             HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCGG
T ss_pred             ccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhcccccc
Confidence            44566778999999999999988777765 445699999999999999999999883   577888999987664332  


Q ss_pred             -CccceEEec
Q 023019          247 -SSIDAVHAG  255 (288)
Q Consensus       247 -~sfD~V~~~  255 (288)
                       +.||.|+..
T Consensus       164 ~~~fD~VL~D  173 (293)
T d2b9ea1         164 YHEVHYILLD  173 (293)
T ss_dssp             GTTEEEEEEC
T ss_pred             cceeeEEeec
Confidence             579999984

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.2e-05  Score=65.69  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~  254 (288)
                      ..++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+... +....++++++.+|+... .-..++||+|+.
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            467899999999999999998755579999999999999999987531 012358999999997642 224568999998


Q ss_pred             c
Q 023019          255 G  255 (288)
Q Consensus       255 ~  255 (288)
                      .
T Consensus       158 D  158 (285)
T d2o07a1         158 D  158 (285)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.52  E-value=0.0002  Score=60.81  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAVH  253 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l--p~~~~sfD~V~  253 (288)
                      ...+||-||-|.|..++.+.+..+..+++.+|+++.+++.+++.+.... ....+++.++.+|+...  ...+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4579999999999999999987665689999999999999999864310 12358899999997642  23456899999


Q ss_pred             ecc
Q 023019          254 AGA  256 (288)
Q Consensus       254 ~~~  256 (288)
                      ...
T Consensus       160 ~D~  162 (290)
T d1xj5a_         160 VDS  162 (290)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            743

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00051  Score=57.99  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCC
Q 023019          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASS  247 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~  247 (288)
                      ....+.+.++.+|||+.+|.|.=+..+++.+.++.++++|+++.-++..+++++..+   ..++.....|..... ...+
T Consensus        94 ~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~~~~~  170 (284)
T d1sqga2          94 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQWCGEQ  170 (284)
T ss_dssp             HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHHHTTC
T ss_pred             cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchhcccc
Confidence            345667788999999999999998888888766799999999999999999998872   334444444433222 2356


Q ss_pred             ccceEEe
Q 023019          248 SIDAVHA  254 (288)
Q Consensus       248 sfD~V~~  254 (288)
                      .||.|+.
T Consensus       171 ~fd~IL~  177 (284)
T d1sqga2         171 QFDRILL  177 (284)
T ss_dssp             CEEEEEE
T ss_pred             cccEEEE
Confidence            8999998

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.36  E-value=3.9e-05  Score=63.20  Aligned_cols=72  Identities=17%  Similarity=0.122  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCc
Q 023019          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSS  248 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~s  248 (288)
                      ++.+|||||++.|.-+..+++    .+..++++|+|+++........        ...++.++++|.....    +....
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~~~~~~~l~~~~  151 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDLTTFEHLREMA  151 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeecccccHHHHHHHHhcC
Confidence            357999999999987665553    3456799999998754333221        1578999999986543    33456


Q ss_pred             cceEEecc
Q 023019          249 IDAVHAGA  256 (288)
Q Consensus       249 fD~V~~~~  256 (288)
                      +|.|+.-.
T Consensus       152 ~dlIfID~  159 (232)
T d2bm8a1         152 HPLIFIDN  159 (232)
T ss_dssp             SSEEEEES
T ss_pred             CCEEEEcC
Confidence            88887643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.25  E-value=0.00012  Score=62.74  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~  254 (288)
                      ...+||-||.|.|..++.+.+..+..+|+.+|+++.+++.|++.+.... +...+++.++.+|+... .-..++||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            4678999999999999999987655699999999999999999875421 12357899999998642 234578999998


Q ss_pred             cc
Q 023019          255 GA  256 (288)
Q Consensus       255 ~~  256 (288)
                      ..
T Consensus       186 D~  187 (312)
T d2b2ca1         186 DS  187 (312)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00061  Score=59.78  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=56.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------------CCCEEEEEecCCCCCC
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------KENFLLVRADISRLPF  244 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------------~~~i~~~~~d~~~lp~  244 (288)
                      +.+|||..||+|..+..++...+...|+..|+|+..++.++++++.+ +..             ...+.+...|+..+..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN-~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN-FDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH-CCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhc-CccccccccccccccccceeEeehhhhhhhhH
Confidence            67999999999999987666544468999999999999999999876 211             1235556666543322


Q ss_pred             -CCCccceEEec
Q 023019          245 -ASSSIDAVHAG  255 (288)
Q Consensus       245 -~~~sfD~V~~~  255 (288)
                       ....||+|..-
T Consensus       125 ~~~~~fDvIDiD  136 (375)
T d2dula1         125 ERHRYFHFIDLD  136 (375)
T ss_dssp             HSTTCEEEEEEC
T ss_pred             hhcCcCCcccCC
Confidence             23569988873

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00063  Score=58.48  Aligned_cols=60  Identities=15%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l  242 (288)
                      .+..|||||.|.|.++..+.+.+...+|+++|+++.+++..++.+.      ..++.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEeCchhhc
Confidence            4678999999999999999887432589999999999999988743      35788899998643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00062  Score=62.46  Aligned_cols=101  Identities=10%  Similarity=0.026  Sum_probs=71.3

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC----C--------------CCEEEEEeCCHHHHHHHH
Q 023019          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----L--------------FSLVVALDYSENMLKQCY  218 (288)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~----~--------------~~~v~gvD~s~~~l~~A~  218 (288)
                      +.|++|....+.+.+.+.+.++.+|+|-.||+|.++..+.+..    .              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4488999999999999998889999999999999998766531    1              125899999999999999


Q ss_pred             HHHHhcCCCCC---CCEEEEEecCCCCC-CCCCccceEEecccc
Q 023019          219 EFVQQESNFPK---ENFLLVRADISRLP-FASSSIDAVHAGAAI  258 (288)
Q Consensus       219 ~~~~~~~g~~~---~~i~~~~~d~~~lp-~~~~sfD~V~~~~vl  258 (288)
                      -++-..+ ...   ..-.+..++....+ .....||+|+++=-+
T Consensus       224 ~nl~l~~-~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPf  266 (524)
T d2ar0a1         224 MNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF  266 (524)
T ss_dssp             HHHHTTT-CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCC
T ss_pred             HHHHhhc-ccccccccchhhhhhhhhhcccccccceeEEecCCc
Confidence            8876551 110   11123344433221 234679999997544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.75  E-value=0.0011  Score=54.69  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=62.8

Q ss_pred             HHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CC-----CCCCEEEEEecC
Q 023019          168 LMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-----PKENFLLVRADI  239 (288)
Q Consensus       168 ~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~-----~~~~i~~~~~d~  239 (288)
                      .+.+.++..  ...+|||.-+|.|..+..++..|.  +|+++|-++.+....++.+.... +.     ...+++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            344444433  234899999999999999999986  99999999987766665543320 00     023789999997


Q ss_pred             CC-CCCCCCccceEEeccccc
Q 023019          240 SR-LPFASSSIDAVHAGAAIH  259 (288)
Q Consensus       240 ~~-lp~~~~sfD~V~~~~vl~  259 (288)
                      .+ +.-....||+|+.-=.+.
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFP  175 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCc
Confidence            54 332356799999865553

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.68  E-value=0.0026  Score=51.85  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~  222 (288)
                      -|....+.+++... .+|..|||.=+|+|..+.+..+.+-  +.+|+|+++.-++.|++++.
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            45666777777765 4689999999999999999999887  99999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.42  E-value=0.0023  Score=53.86  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=51.9

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.++.... .+|+.|||.-||+|..+.+..+.+-  +.+|+|++++.++.|++++.+.
T Consensus       235 kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         235 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHhc
Confidence            45666777777665 4689999999999999999999887  9999999999999999887543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.18  E-value=0.0065  Score=49.96  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=52.4

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      -|....+.+++... .+|..|||-=+|+|..+.+..+.+-  +.+|+|+++...+.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            45556777777664 4699999999999999999999987  9999999999999999998764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.75  E-value=0.0095  Score=48.63  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s  210 (288)
                      ...++.+|+|+|||.|.++..++.+.....+.|+++-
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            4456889999999999999999988644477888873

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.013  Score=44.80  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.5

Q ss_pred             cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       173 l~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .+..++.+||-+|+| .|.+...+++.. +.+|+++|.+++.++.|++.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence            456679999999998 477777776652 24999999999999999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.18  E-value=0.067  Score=41.73  Aligned_cols=49  Identities=18%  Similarity=0.081  Sum_probs=39.4

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ....++|.+||-+|||. |.+...+++.....+|+++|.++..++.|++.
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            34567799999999997 66777777664446999999999999999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.09  E-value=0.1  Score=44.87  Aligned_cols=82  Identities=9%  Similarity=-0.004  Sum_probs=55.8

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023019          173 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (288)
Q Consensus       173 l~~~~~~~VLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~  245 (288)
                      +.....-.|+|+|+|+|.++.-+.+..       ...+++-+|.|+.+.+.-++++...     .++.++ .+++.+|. 
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~-~~~~~~~~-  147 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE-  147 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC-
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceec-cChhhccc-
Confidence            343345679999999999987665532       2247899999998777777665442     456554 45555542 


Q ss_pred             CCccceEEeccccccCCC
Q 023019          246 SSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       246 ~~sfD~V~~~~vl~h~~d  263 (288)
                        ..-+|+++.++.-+|-
T Consensus       148 --~~g~iiaNE~fDAlPv  163 (365)
T d1zkda1         148 --GPAVILANEYFDVLPI  163 (365)
T ss_dssp             --SSEEEEEESSGGGSCC
T ss_pred             --CCeEEEecccCccccc
Confidence              2368889988887763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.05  E-value=0.1  Score=39.67  Aligned_cols=53  Identities=23%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .+.+..+..++.+||-+|+|. |.+...+++......++.+|.++.-++.+++.
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            345556677899999999985 55666666553335888999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.83  E-value=0.078  Score=40.56  Aligned_cols=53  Identities=26%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .+.+....++|.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            344445566799999999984 77777777764324899999999999999874

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.62  E-value=0.021  Score=31.98  Aligned_cols=28  Identities=32%  Similarity=0.787  Sum_probs=23.0

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      .||.|++.....+          +..+.|+.|++....
T Consensus         5 ~CP~C~seytYed----------g~l~vCPeC~hEW~~   32 (38)
T d2akla2           5 PCPQCNSEYTYED----------GALLVCPECAHEWSP   32 (38)
T ss_dssp             CCTTTCCCCCEEC----------SSSEEETTTTEEECT
T ss_pred             cCCCCCCcceEcC----------CCEEECCcccCcCCc
Confidence            4999999988754          578999999987654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.29  E-value=0.1  Score=39.87  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.+..+.+++..||=+|+|. |.+...+++.....+|+++|.+++-++.|++.
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            34445567899999999996 55566666654336999999999999999987

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.60  E-value=0.16  Score=38.14  Aligned_cols=48  Identities=25%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ....+++.+||-+|+|. |.+...+++... .+|+++|.++.-++.|++.
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHc
Confidence            34566799999999994 777777776643 5999999999999999875

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=92.21  E-value=0.3  Score=40.12  Aligned_cols=70  Identities=23%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEecccc
Q 023019          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAAI  258 (288)
Q Consensus       180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~vl  258 (288)
                      +|||+=||-|.+..-+.+.|. -.+.++|+++.+.+.-+.+.        + -.++.+|+.++... -...|+++...--
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~--------~-~~~~~~Di~~~~~~~~~~~dll~~g~PC   71 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH--------S-AKLIKGDISKISSDEFPKCDGIIGGPPC   71 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHC--------C-SEEEESCTTTSCGGGSCCCSEEEECCCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC--------C-CCCccCChhhCCHhHcccccEEeecccc
Confidence            699999999999999988886 35669999998888777652        2 34678999887533 2468999886544


Q ss_pred             c
Q 023019          259 H  259 (288)
Q Consensus       259 ~  259 (288)
                      +
T Consensus        72 q   72 (324)
T d1dcta_          72 Q   72 (324)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.09  E-value=0.13  Score=39.09  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.+..+.+++.+||=+|||. |.+...+++.....+|+++|.++.-++.|++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            34445667899999999996 55555555553236899999999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.05  E-value=0.18  Score=38.39  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=41.9

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.+..+.+++.+||=+|||. |.++..+++......|+.+|.++.-++.|++.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            34445667899999999997 88888888875445899999999998888874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.08  Score=44.32  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCccceEE
Q 023019          178 GGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVH  253 (288)
Q Consensus       178 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~sfD~V~  253 (288)
                      ..+|+|+-||.|.+...|.+.|...+ +.++|+++.+++.-+.+        .+...++.+|+.++...   ...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n--------~~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN--------FPHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH--------CCCCCcccCchhhCCHhHcCCCCccEEE
Confidence            45799999999999999888875433 67999999988887776        33445667787766422   23578888


Q ss_pred             eccc
Q 023019          254 AGAA  257 (288)
Q Consensus       254 ~~~v  257 (288)
                      ...-
T Consensus        74 ggpP   77 (343)
T d1g55a_          74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            7553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.84  E-value=0.34  Score=34.67  Aligned_cols=65  Identities=20%  Similarity=0.267  Sum_probs=43.6

Q ss_pred             eEEEEcCcc-chH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccceEE
Q 023019          180 NIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  253 (288)
Q Consensus       180 ~VLDiGcG~-G~~-~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~V~  253 (288)
                      +|+=+|+|. |.. ...|.+.+.  .|+.+|.+++.++.+++.         .+..++.+|+.+..    ..-..+|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence            577777753 432 334445565  999999999998887664         24668899987642    2234578877


Q ss_pred             ec
Q 023019          254 AG  255 (288)
Q Consensus       254 ~~  255 (288)
                      +.
T Consensus        71 ~~   72 (132)
T d1lssa_          71 AV   72 (132)
T ss_dssp             EC
T ss_pred             cc
Confidence            73

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.051  Score=33.75  Aligned_cols=31  Identities=13%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        69 l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      +..+.||.|++.-...+        ...+.+.|..||.+
T Consensus         9 ~~~~~Cp~Cgs~~ii~D--------~~~Ge~vC~~CG~V   39 (58)
T d1dl6a_           9 LPRVTCPNHPDAILVED--------YRAGDMICPECGLV   39 (58)
T ss_dssp             CSCCSBTTBSSSCCEEC--------SSSCCEECTTTCCE
T ss_pred             ccccCCCCCCCCCEEEE--------CCCCcEecccCCCE
Confidence            45677999999643322        23578999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.12  Score=38.84  Aligned_cols=48  Identities=19%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ..+.+++.+||=+|+|. |.+...+++.. ..+++++|.+++-++.+++.
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc
Confidence            34567799999999985 77777777763 24888999999888888765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.33  Score=36.36  Aligned_cols=49  Identities=24%  Similarity=0.273  Sum_probs=37.9

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .....++.+||=+|+|. |.+...+++.....+|+++|.++.-++.|++.
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            34566789999999986 56666666664335899999999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.25  Score=37.21  Aligned_cols=95  Identities=14%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             HHHhhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          168 LMKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      .+.+..+..++.+||-.|+  |.|.....+++... .+|++++-+++-++.+++.     |  ..  .++  |..+..  
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~-----G--a~--~vi--~~~~~~~~   86 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN-----G--AH--EVF--NHREVNYI   86 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-----T--CS--EEE--ETTSTTHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccC-ccccccccccccccccccc-----C--cc--ccc--ccccccHH
Confidence            3445556678999999996  35777777776632 4999999999888888763     1  11  122  332221  


Q ss_pred             ------CCCCccceEEeccccccCCCccccc---ceEEEE
Q 023019          244 ------FASSSIDAVHAGAAIHCWSSPSTGV---GVFFQV  274 (288)
Q Consensus       244 ------~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~  274 (288)
                            .....+|+|+....=.++..-...+   |+++..
T Consensus        87 ~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          87 DKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEE
Confidence                  1345699999865433333323333   666654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.45  E-value=0.22  Score=37.77  Aligned_cols=50  Identities=12%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +....+++.+||=+|||. |.+...+++.....+|+++|.++.-++.|++.
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            334567799999999996 88888888764324799999999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.38  E-value=0.59  Score=37.61  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +++++|=.|++.|.   .+..|++.|.  +|+.++.++.-++.+.+.+...    ...+.++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~   78 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA   78 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHH
Confidence            47889999988763   4566777787  9999999999988888888776    467888899987642          


Q ss_pred             -CCCCccceEEeccccccCC
Q 023019          244 -FASSSIDAVHAGAAIHCWS  262 (288)
Q Consensus       244 -~~~~sfD~V~~~~vl~h~~  262 (288)
                       .-++..|+++.+..+.+..
T Consensus        79 ~~~~g~idilinnag~~~~~   98 (258)
T d1ae1a_          79 HVFDGKLNILVNNAGVVIHK   98 (258)
T ss_dssp             HHTTSCCCEEEECCCCCCCC
T ss_pred             HHhCCCcEEEeccccccccC
Confidence             1135688888877665543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.62  Score=37.20  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      .|+.+|=-|++.|.   ++..|++.|.  +|+.+|.+++-++...+.+...    ..++..+.+|+.+..          
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47788888988874   5677777787  9999999999998888887766    467889999998642          


Q ss_pred             CCCCccceEEeccccccCCC
Q 023019          244 FASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d  263 (288)
                      -..+..|+++.+..+.+...
T Consensus        80 ~~~g~idilinnag~~~~~~   99 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVYTSD   99 (244)
T ss_dssp             HHTCCCSEEEECCCCCCCCC
T ss_pred             HHcCCCceeEeecccccccc
Confidence            13467899998887765543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.27  E-value=0.33  Score=36.22  Aligned_cols=41  Identities=17%  Similarity=0.395  Sum_probs=34.1

Q ss_pred             eEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       180 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +|+=||||.  |.++..|.+.++..+|+|+|.+++.++.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            588899995  44677888888777999999999999999874

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.25  E-value=0.37  Score=41.64  Aligned_cols=51  Identities=10%  Similarity=0.023  Sum_probs=41.5

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhc
Q 023019          174 KPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQE  224 (288)
Q Consensus       174 ~~~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~  224 (288)
                      ...++..++|||+-.|.++..+++..  ...+|+++|+++...+..+++++..
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            34567899999999999888776542  2358999999999999999887654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.97  E-value=0.42  Score=35.44  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       172 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      ..+.+++.+||=+|+|. |.+...+++... .+|+++|.++.-++.+++.
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc
Confidence            34567799999999986 777777777643 5999999999999988874

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=89.80  E-value=0.31  Score=40.36  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEec
Q 023019          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  255 (288)
Q Consensus       177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~  255 (288)
                      .+.+|||+=||-|.+...|.+.|. ..+.++|+++.+++.-+.+....          ..+|+.++... -..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~----------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCC----------CcCchhcCchhhcceeeeeecc
Confidence            478999999999999999998886 35677999999999888775322          24677665422 2468988885


Q ss_pred             cc
Q 023019          256 AA  257 (288)
Q Consensus       256 ~v  257 (288)
                      .-
T Consensus        79 pP   80 (327)
T d2c7pa1          79 FP   80 (327)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.55  E-value=0.41  Score=35.82  Aligned_cols=52  Identities=13%  Similarity=0.034  Sum_probs=38.7

Q ss_pred             HHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.+..+.+++.+||=+|+|.+. ....+++......|+++|.+++-++.+++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            4455567789999999999844 444444444346899999999999998874

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.058  Score=32.35  Aligned_cols=41  Identities=20%  Similarity=0.480  Sum_probs=25.1

Q ss_pred             cCCceeCCCCCCC-CcccCCCCCccccccCCceecCCCCccc
Q 023019           68 SKNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (288)
Q Consensus        68 ~l~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~  108 (288)
                      ..+++.||.|+.. ......+..+.++...-.+.|.+|++.+
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            3467899999984 2222222233333444578899999754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=1.2  Score=35.36  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC------CCCC
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS  247 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~~  247 (288)
                      .|+++|-.|++.|.   ....|++.|.  +|+.+|.+++-++...+.        ..++..+..|+.+..      -.-+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            48899999988773   5567777777  999999999887766554        345777888886531      1226


Q ss_pred             ccceEEeccccccC
Q 023019          248 SIDAVHAGAAIHCW  261 (288)
Q Consensus       248 sfD~V~~~~vl~h~  261 (288)
                      ..|+++.+..+.+.
T Consensus        76 ~iDilVnnAg~~~~   89 (244)
T d1pr9a_          76 PVDLLVNNAAVALL   89 (244)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CceEEEeccccccc
Confidence            78999987766544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.16  E-value=0.96  Score=36.09  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +++.+|=.|.+.|.   ....|++.|.  +|+.+|.+++.++.+.+.+...    ..++..+.+|+.+..          
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47778888877663   3444455565  9999999999999888888776    457888999997632          


Q ss_pred             CCCCccceEEeccccccC
Q 023019          244 FASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~  261 (288)
                      -.-+..|+++.+..+.+.
T Consensus        83 ~~~g~iDilvnnag~~~~  100 (251)
T d2c07a1          83 TEHKNVDILVNNAGITRD  100 (251)
T ss_dssp             HHCSCCCEEEECCCCCCC
T ss_pred             HhcCCceeeeeccccccc
Confidence            122679999987766544

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=0.088  Score=33.63  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      +.||.|+.+|.+.+           +..+|..|+..|..
T Consensus         3 ~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~~   30 (71)
T d2jnea1           3 LHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   30 (71)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             CcCCCccCcccccC-----------CCEehhhhhhhhee
Confidence            46999999998743           57888888876654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=1.1  Score=33.24  Aligned_cols=95  Identities=8%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCc--cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-
Q 023019          168 LMKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-  244 (288)
                      .+.+.....++.+||=.|+|  .|.++..+++... .+|++++.|++-.+.+++.     |   .. ..+  |..+-.+ 
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~l-----G---a~-~vi--~~~~~d~~   86 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-----G---AW-QVI--NYREEDLV   86 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-----T---CS-EEE--ETTTSCHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhc-----C---Ce-EEE--ECCCCCHH
Confidence            44455556778999999666  4667777776632 4999999999999988875     1   11 122  2222211 


Q ss_pred             -------CCCccceEEeccccccCCCccccc---ceEEEE
Q 023019          245 -------ASSSIDAVHAGAAIHCWSSPSTGV---GVFFQV  274 (288)
Q Consensus       245 -------~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~  274 (288)
                             ....+|+|+....-+.+..-...+   |++++.
T Consensus        87 ~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          87 ERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             HHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeec
Confidence                   245689888765555443333333   655543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.33  E-value=1.5  Score=35.00  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +|+++|=-|.+.|.   ....|++.|.  +|+.+|.+++.++.+.+.+...    ..++..+.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47888988887764   5667777787  9999999999999888888776    457888999987632          


Q ss_pred             CCCCccceEEeccccc
Q 023019          244 FASSSIDAVHAGAAIH  259 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~  259 (288)
                      -.-+..|+++.+....
T Consensus        78 ~~~g~iDilVnnaG~~   93 (260)
T d1zema1          78 RDFGKIDFLFNNAGYQ   93 (260)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCCCeehhhhccc
Confidence            0125789999876544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.32  E-value=0.54  Score=35.07  Aligned_cols=53  Identities=19%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      .+.+..+.+++.+||=+|+|. |.++..+++......|+++|.++.-++.+++.
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            344555667899999999884 45555565553335899999999999998875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.19  E-value=0.73  Score=34.45  Aligned_cols=52  Identities=15%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       169 l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +.+..+.++|.+||=+|+|. |.....+++.....+|+++|.+++-++.+++.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            44555677899999999975 44555555554446999999999999998875

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=87.08  E-value=0.36  Score=38.94  Aligned_cols=79  Identities=18%  Similarity=0.078  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC----------------------------------------CCEEEEEeCCHHHHH
Q 023019          176 VLGGNIIDASCGSGLFSRIFAKSGL----------------------------------------FSLVVALDYSENMLK  215 (288)
Q Consensus       176 ~~~~~VLDiGcG~G~~~~~l~~~~~----------------------------------------~~~v~gvD~s~~~l~  215 (288)
                      ..+..++|--||+|.++.+.+-...                                        ...++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            3455799999999999887655210                                        024679999999999


Q ss_pred             HHH---HHHHhcCCCCCCCEEEEEecCCCCC-C----CCCccceEEecc
Q 023019          216 QCY---EFVQQESNFPKENFLLVRADISRLP-F----ASSSIDAVHAGA  256 (288)
Q Consensus       216 ~A~---~~~~~~~g~~~~~i~~~~~d~~~lp-~----~~~sfD~V~~~~  256 (288)
                      .|+   +++...+  ....+.+.+.|+.+.. .    .....++|+++=
T Consensus       129 ~A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNP  175 (249)
T d1o9ga_         129 AARRLRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL  175 (249)
T ss_dssp             HHHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCC
Confidence            884   5666652  3577899999986542 1    234568888864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=87.04  E-value=0.86  Score=38.67  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             CeEEEEcCccchHHHHHHH--------h--------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCC--EEEEEecCC
Q 023019          179 GNIIDASCGSGLFSRIFAK--------S--------GLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADIS  240 (288)
Q Consensus       179 ~~VLDiGcG~G~~~~~l~~--------~--------~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~--i~~~~~d~~  240 (288)
                      -+|.|+||.+|..+..+..        .        -+..+|+.-|+-.+--...-+.+... +....+  +..+-+.+-
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~-~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-NDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS-CSCTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccc-ccCCCCeEEEecCCchh
Confidence            5699999999987642211        1        13356777777665443333333222 000111  223445555


Q ss_pred             CCCCCCCccceEEeccccccCCC
Q 023019          241 RLPFASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       241 ~lp~~~~sfD~V~~~~vl~h~~d  263 (288)
                      .--||+++.|++++..+|||+..
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~  154 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSS
T ss_pred             hhcCCCCceEEeeehhhhhhhhc
Confidence            55588999999999999999864

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=86.77  E-value=0.091  Score=32.41  Aligned_cols=39  Identities=18%  Similarity=0.492  Sum_probs=23.2

Q ss_pred             ceeCCCCCCC-CcccCCCCCccccccCCceecCCCCcccc
Q 023019           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (288)
Q Consensus        71 ~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~  109 (288)
                      .+.||.|+.. ......+..+.+..+.-.+.|.+|++.+.
T Consensus        15 ~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr   54 (57)
T d1qypa_          15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             cCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence            3579999983 22222222223334455778999998664

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.77  E-value=0.16  Score=30.38  Aligned_cols=28  Identities=18%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      ..||.|++.-...+        ...+.+.|..||.+
T Consensus         6 ~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~V   33 (50)
T d1pfta_           6 KVCPACESAELIYD--------PERGEIVCAKCGYV   33 (50)
T ss_dssp             CSCTTTSCCCEEEE--------TTTTEEEESSSCCB
T ss_pred             ccCcCCCCCcEEEE--------CCCCeEecccCCcE
Confidence            45999998543332        24678999999964

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.47  E-value=1.8  Score=34.41  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------C
Q 023019          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  244 (288)
Q Consensus       178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------~  244 (288)
                      ++.+|=-|++.|.   .+..|++.|.  +|+.+|.+++.++.+.+.+...    ..++.++.+|+.+..          -
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREA----GVEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4556777876664   4566677776  9999999999999888888776    457889999987642          1


Q ss_pred             CCCccceEEeccccccC
Q 023019          245 ASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       245 ~~~sfD~V~~~~vl~h~  261 (288)
                      .-+..|+++.+..+.+.
T Consensus        76 ~~g~iDilVnnAG~~~~   92 (257)
T d2rhca1          76 RYGPVDVLVNNAGRPGG   92 (257)
T ss_dssp             HTCSCSEEEECCCCCCC
T ss_pred             HhCCCCEEEecccccCC
Confidence            12578999987766543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=1.7  Score=34.72  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +++.+|=.|++.|.   ....|++.|.  +|+.+|.+++.++.+.+.++..+  ...++.++.+|+.+..          
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHHHHH
Confidence            47789999988874   4566677776  99999999999988888877651  1346788899998632          


Q ss_pred             CCCCccceEEeccccccC
Q 023019          244 FASSSIDAVHAGAAIHCW  261 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~  261 (288)
                      -.-+..|+++.+....+.
T Consensus        85 ~~~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          85 SQHSGVDICINNAGLARP  102 (257)
T ss_dssp             HHHCCCSEEEECCCCCCC
T ss_pred             HhcCCCCEEEecccccCC
Confidence            112578999987766543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.17  E-value=1.3  Score=35.68  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +++++|=.|++.|.   ....|++.|.  +|+.+|.+++-++.+.+.+.+. +....++..+.+|+.+..          
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            47788888887763   4566777776  9999999999999988888765 333457889999987632          


Q ss_pred             CCCCccceEEeccccc
Q 023019          244 FASSSIDAVHAGAAIH  259 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~  259 (288)
                      -.-+..|+++.+....
T Consensus        81 ~~~g~iDilvnnAG~~   96 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGAA   96 (272)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCceEEEeCCccc
Confidence            1125789999876554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.73  Score=36.84  Aligned_cols=88  Identities=15%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      .|+++|=-|++.|.   .+..|++.|.  +|+.+|.+++-++.+.+.+...  ....++.++.+|+.+..          
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQ--FEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT--SCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--cCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            37788888887764   4566666776  9999999999888887776543  12357888999998642          


Q ss_pred             CCCCccceEEeccccccCCCccccc
Q 023019          244 FASSSIDAVHAGAAIHCWSSPSTGV  268 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h~~d~~~~l  268 (288)
                      -.-+..|+++.+..+....+.++.+
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~~~  102 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEKTL  102 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHH
T ss_pred             HHcCCcCeecccccccccccchhee
Confidence            0125789999988887766655554

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.75  E-value=0.32  Score=31.35  Aligned_cols=40  Identities=13%  Similarity=0.359  Sum_probs=25.2

Q ss_pred             ceeCCCCCCC-CcccCCCCCccccccCCceecCCCCccccc
Q 023019           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        71 ~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      ...||.|+.. ......+..+.+..+.-.+.|.+|++.+..
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            4679999983 222222333334455567899999987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.49  E-value=1.6  Score=35.27  Aligned_cols=83  Identities=16%  Similarity=0.158  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCccc---hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---------
Q 023019          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  243 (288)
Q Consensus       176 ~~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---------  243 (288)
                      -+|+++|=-|++.|   .....|++.|.  +|+.+|.+..-++.+.+.+....   ...+.++.+|+.+..         
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhh
Confidence            35788999998776   35566677776  99999999988877776665431   356788889987532         


Q ss_pred             -CCCCccceEEeccccccCCC
Q 023019          244 -FASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       244 -~~~~sfD~V~~~~vl~h~~d  263 (288)
                       -..+..|+++.+....+...
T Consensus        98 ~~~~g~iDilvnnAg~~~~~~  118 (294)
T d1w6ua_          98 IKVAGHPNIVINNAAGNFISP  118 (294)
T ss_dssp             HHHTCSCSEEEECCCCCCCSC
T ss_pred             hhhccccchhhhhhhhccccc
Confidence             12367899998877655443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.07  E-value=1.4  Score=35.59  Aligned_cols=80  Identities=24%  Similarity=0.330  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----  244 (288)
                      +|+++|=-|++.|.   ....|++.|.  +|+.+|.+++-++.+.+.+.+. +....++..+.+|+.+..     +    
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVTEASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence            47788888888764   4566777776  9999999999999888887776 333457889999987642     0    


Q ss_pred             -CCCccceEEeccccc
Q 023019          245 -ASSSIDAVHAGAAIH  259 (288)
Q Consensus       245 -~~~sfD~V~~~~vl~  259 (288)
                       .-+..|+++.+....
T Consensus        80 ~~~G~iDilVnnAG~~   95 (274)
T d1xhla_          80 AKFGKIDILVNNAGAN   95 (274)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCceEEEeecccc
Confidence             125789999876543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.38  E-value=1.3  Score=32.94  Aligned_cols=92  Identities=16%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CCCC
Q 023019          175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASS  247 (288)
Q Consensus       175 ~~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~  247 (288)
                      ..++.+||-+|+|. |.+...+++. +. ..|+++|.+++-++.+++.-         ...++..+-....     ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g---------a~~~i~~~~~~~~~~~~~~~~~   99 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG---------ADHVVDARRDPVKQVMELTRGR   99 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT---------CSEEEETTSCHHHHHHHHTTTC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc---------cceeecCcccHHHHHHHhhCCC
Confidence            35689999999986 5555666554 43 58999999999888888741         1122322211110     1234


Q ss_pred             ccceEEeccccc-cCCCccccc---ceEEEEec
Q 023019          248 SIDAVHAGAAIH-CWSSPSTGV---GVFFQVTL  276 (288)
Q Consensus       248 sfD~V~~~~vl~-h~~d~~~~l---G~lvi~t~  276 (288)
                      .+|+|+-.-.-. .+..-...+   |++++..+
T Consensus       100 g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         100 GVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             CEEEEEESSCCHHHHHHGGGGEEEEEEEEECCC
T ss_pred             CceEEEEecCcchHHHHHHHHHhCCCEEEEEeC
Confidence            588888755433 233333344   77776554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.37  E-value=2.4  Score=31.63  Aligned_cols=98  Identities=9%  Similarity=-0.062  Sum_probs=61.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--
Q 023019          167 ELMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--  242 (288)
Q Consensus       167 ~~l~~~l~~~~~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--  242 (288)
                      ..+.+..+.++|++||-.|++.  |..+..+++... .+|++++-+++-++.+++.        . .-..+..+-+..  
T Consensus        19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~--------G-a~~vi~~~~~~~~~   88 (182)
T d1v3va2          19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI--------G-FDAAFNYKTVNSLE   88 (182)
T ss_dssp             HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT--------T-CSEEEETTSCSCHH
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhh--------h-hhhhcccccccHHH
Confidence            3455666677899999887754  567777777643 5999999999888887764        1 111222221111  


Q ss_pred             ----CCCCCccceEEeccccccCCCccccc---ceEEEE
Q 023019          243 ----PFASSSIDAVHAGAAIHCWSSPSTGV---GVFFQV  274 (288)
Q Consensus       243 ----p~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~  274 (288)
                          ......+|+|+-.-.-+++......+   |+++..
T Consensus        89 ~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          89 EALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEee
Confidence                01335699998866555555555555   666654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.30  E-value=1.6  Score=34.96  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +++.+|=-|++.|.   ....|++.|.  +|+.+|.+++.++.+.+.+... +....++.++.+|+.+..          
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~~Dvt~~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAA-GVSEQNVNSVVADVTTDAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence            46778888887664   4566667776  9999999999998888887765 333456899999987532          


Q ss_pred             CCCCccceEEeccccc
Q 023019          244 FASSSIDAVHAGAAIH  259 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~  259 (288)
                      -.-+..|+++.+....
T Consensus        81 ~~~g~iDilvnnAG~~   96 (264)
T d1spxa_          81 GKFGKLDILVNNAGAA   96 (264)
T ss_dssp             HHHSCCCEEEECCC--
T ss_pred             HHhCCCCEeecccccc
Confidence            0125789998876553

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.22  E-value=2.2  Score=33.99  Aligned_cols=80  Identities=14%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +|+++|=-|.+.|.   ....|++.|.  +|+.+|.+++-++.+.+.+...    ..++.++.+|+.+..          
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            47889988887764   4566777776  9999999999998888887776    467888899987532          


Q ss_pred             CC-CCccceEEeccccccCC
Q 023019          244 FA-SSSIDAVHAGAAIHCWS  262 (288)
Q Consensus       244 ~~-~~sfD~V~~~~vl~h~~  262 (288)
                      -. .+..|+++.+..+.+..
T Consensus        81 ~~~~~~idilvnnAG~~~~~  100 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVIYK  100 (259)
T ss_dssp             HHTTTCCCEEEECCCCCCCC
T ss_pred             HHhCCCceEEEECCceeccC
Confidence            01 23689999887765543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.15  E-value=2.9  Score=32.89  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC------CCCC
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS  247 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~~  247 (288)
                      .|+++|=.|++.|.   ....|++.|.  +|+.+|.+++-++...+.        ..++..+..|+.+..      -.-+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~g   73 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGIG   73 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            47889988887763   4566677776  999999998877665543        346778888887532      1126


Q ss_pred             ccceEEecccccc
Q 023019          248 SIDAVHAGAAIHC  260 (288)
Q Consensus       248 sfD~V~~~~vl~h  260 (288)
                      ..|+++.+..+.+
T Consensus        74 ~iDilVnnAg~~~   86 (242)
T d1cyda_          74 PVDLLVNNAALVI   86 (242)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCeEEEECCcccc
Confidence            7899998776544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=84.03  E-value=1.3  Score=32.64  Aligned_cols=39  Identities=10%  Similarity=0.133  Sum_probs=31.0

Q ss_pred             eEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023019          180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (288)
Q Consensus       180 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~  220 (288)
                      +|.=||+|.  +.++..|.+.+.  +|++.|.+++.++.+++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh
Confidence            577789884  446778888887  999999999988887763

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=0.29  Score=26.71  Aligned_cols=25  Identities=36%  Similarity=0.800  Sum_probs=18.4

Q ss_pred             eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      -.||.|+..-...+              .|..|++.|..
T Consensus         3 G~CP~C~~~~a~GD--------------qCe~CG~~~~p   27 (35)
T d1pfva3           3 GTCPKCKSPDQYGD--------------NCEVCGATYSP   27 (35)
T ss_dssp             EECTTTCCSSEETT--------------BCTTTCCBCCG
T ss_pred             eECCCCCCcccccc--------------cHHHcCCcCCH
Confidence            35999998665533              69999988743

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.53  E-value=2  Score=34.31  Aligned_cols=77  Identities=13%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----  244 (288)
                      +++++|-.|++.|.   ....|++.|.  +|+.+|.+++.++.+.+.+...     ..+.++.+|+.+..     +    
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCC-----CceEEEEccCCCHHHHHHHHHHHH
Confidence            47889999988764   4556667776  9999999999888877776543     45778889987632     1    


Q ss_pred             -CCCccceEEecccccc
Q 023019          245 -ASSSIDAVHAGAAIHC  260 (288)
Q Consensus       245 -~~~sfD~V~~~~vl~h  260 (288)
                       .-+..|+++.+..+.+
T Consensus        78 ~~~g~iD~lVnnAG~~~   94 (268)
T d2bgka1          78 AKHGKLDIMFGNVGVLS   94 (268)
T ss_dssp             HHHSCCCEEEECCCCCC
T ss_pred             HHcCCcceecccccccc
Confidence             1257899998776544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=83.49  E-value=0.98  Score=31.94  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             eEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----CCCccceEE
Q 023019          180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAVH  253 (288)
Q Consensus       180 ~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~sfD~V~  253 (288)
                      +++=+|+|. |. +...|.+.+.  .|+.+|.+++.++.+++.          ....+.+|+.+...    .-...|.|+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~~----------~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYASY----------ATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTTT----------CSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHHh----------CCcceeeecccchhhhccCCccccEEE
Confidence            355567663 43 3344555566  899999999988887642          34567788876531    123567665


Q ss_pred             e
Q 023019          254 A  254 (288)
Q Consensus       254 ~  254 (288)
                      +
T Consensus        70 ~   70 (134)
T d2hmva1          70 V   70 (134)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.24  E-value=2.1  Score=34.14  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----  244 (288)
                      +++++|=-|++.|.   .+..|++.|.  +|+.+|.+++-++.+.+.+...    ..++..+.+|+.+..     +    
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKK----GFQVTGSVCDASLRPEREKLMQTVS   80 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEeccCCCHHHHHHHHHHHH
Confidence            47888888988774   5667777777  9999999999998888887766    457889999987532     0    


Q ss_pred             C--CCccceEEeccccccC
Q 023019          245 A--SSSIDAVHAGAAIHCW  261 (288)
Q Consensus       245 ~--~~sfD~V~~~~vl~h~  261 (288)
                      .  .+..|+++.+..+.+.
T Consensus        81 ~~~~g~idilvnnAG~~~~   99 (259)
T d1xq1a_          81 SMFGGKLDILINNLGAIRS   99 (259)
T ss_dssp             HHHTTCCSEEEEECCC---
T ss_pred             HHhCCCcccccccccccCC
Confidence            1  2578999988766543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.82  E-value=1.8  Score=34.48  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCccc---hHHHHHHHhCCCCEEEE-EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------
Q 023019          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVA-LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------  243 (288)
Q Consensus       176 ~~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~g-vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------  243 (288)
                      ..|+++|=.|.+.|   ..+..|++.|.  +|+. .+-++..++.+.+.+...    ..++..+.+|+.+..        
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHc----CCCceEecCCCCCHHHHHHHHHH
Confidence            35788897787666   45666777777  7776 467777788888887776    457889999987532        


Q ss_pred             --CCCCccceEEeccccccCCC
Q 023019          244 --FASSSIDAVHAGAAIHCWSS  263 (288)
Q Consensus       244 --~~~~sfD~V~~~~vl~h~~d  263 (288)
                        ..-+..|+++.+..+.+..+
T Consensus        78 ~~~~~g~idilinnag~~~~~~   99 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCD   99 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCC
T ss_pred             HHHHcCCCcEEEeccccccccc
Confidence              12257899999888766544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.77  E-value=2  Score=34.12  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023019          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (288)
Q Consensus       177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----------  243 (288)
                      +|+++|=-|.+.|.   ....|++.|.  +|+.+|.+++.++.+.+.++..    ..++.++.+|+.+..          
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47788877776653   3455566666  9999999999999888888776    457888999998632          


Q ss_pred             CCCCccceEEecccccc
Q 023019          244 FASSSIDAVHAGAAIHC  260 (288)
Q Consensus       244 ~~~~sfD~V~~~~vl~h  260 (288)
                      -.-+..|+++.+..+.+
T Consensus        84 ~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          84 SKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHSSCCEEEECCCCCC
T ss_pred             HHcCCCCEeeeCCcCCC
Confidence            01157899998876654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.44  E-value=1.6  Score=32.43  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=57.2

Q ss_pred             HHHhhcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023019          168 LMKGYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (288)
Q Consensus       168 ~l~~~l~~~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--  243 (288)
                      .+.+....+++.+||=.|. | .|.++..+++... .++++++-+++-.+.+++.     |   .. ..+...-.++.  
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~-----G---a~-~vi~~~~~~~~~~   85 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-----G---VE-YVGDSRSVDFADE   85 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-----C---CS-EEEETTCSTHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccc-----c---cc-ccccCCccCHHHH
Confidence            3445556677899999773 3 5777777776632 4999998888777777653     1   11 12221111110  


Q ss_pred             ----CCCCccceEEeccccccCCCccccc---ceEEEE
Q 023019          244 ----FASSSIDAVHAGAAIHCWSSPSTGV---GVFFQV  274 (288)
Q Consensus       244 ----~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~  274 (288)
                          .....||+|+..-.-+++......+   |+++..
T Consensus        86 v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEE
Confidence                1235799999866544444444444   776654

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=81.73  E-value=0.45  Score=25.93  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=17.6

Q ss_pred             eCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023019           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (288)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~  110 (288)
                      .||.|+..-...              =.|..|++.|-.
T Consensus         4 ~CP~C~~~~a~G--------------DqCe~CG~~~~p   27 (35)
T d1rqga3           4 TCPYCGAEDQKG--------------DQCEVCGRPLTP   27 (35)
T ss_dssp             BCSSSCCSCCCT--------------TTCSSSCCCCCT
T ss_pred             ECCCCCCCcccC--------------cchhhcCCccCH
Confidence            599999865543              369999987754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.01  E-value=1.7  Score=31.96  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             hhcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----
Q 023019          171 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (288)
Q Consensus       171 ~~l~~~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----  243 (288)
                      +..+..++.+||=+|+ | .|.+...+++......|+++|.++.-++.+++.     |   .. ..+..+-.+..     
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-----G---a~-~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-----G---AD-YVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-----T---CS-EEEETTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-----C---Cc-eeeccCCcCHHHHHHH
Confidence            3346677999999997 3 466666555543335999999999999988875     1   11 12222222110     


Q ss_pred             -CCCCccceEEeccccc-cCCCccccc---ceEEEEec
Q 023019          244 -FASSSIDAVHAGAAIH-CWSSPSTGV---GVFFQVTL  276 (288)
Q Consensus       244 -~~~~sfD~V~~~~vl~-h~~d~~~~l---G~lvi~t~  276 (288)
                       ...+.||+|+....-. -++.--..+   |++++...
T Consensus        92 ~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          92 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             HTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCS
T ss_pred             HhhcccchhhhcccccchHHHhhhhhcccCCEEEEecc
Confidence             1235689888755432 233333444   77766543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.58  E-value=0.21  Score=31.25  Aligned_cols=40  Identities=20%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             cccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023019           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (288)
Q Consensus        66 ~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~  107 (288)
                      ......+.||.|+.....-+.  ...-....+.+.|..|+..
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda--~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHH--HHHEETTTTEEBCSSSCCB
T ss_pred             cccCCceECCCCCCCcchhhH--HHhcCcCCCeEEecCCCCE
Confidence            345678999999985321110  0000124578999999854