BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023021
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 356 bits (914), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 24 AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N + WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
GPFIGAA+AA YHQ V+RA K+
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 24 AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N + WDD WIFWV
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
GPFIGAA+AA YHQ V+RA K+
Sbjct: 271 GPFIGAAVAAAYHQYVLRAAAIKA 294
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 24 AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N + WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
GPFIGAA+AA YHQ V+RA K+
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 354 bits (908), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 183/264 (69%), Positives = 198/264 (75%), Gaps = 1/264 (0%)
Query: 24 AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 28 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 87
Query: 84 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+ L RAL YM+ QCL
Sbjct: 88 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 147
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 148 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 206
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N + WDD WIFWV
Sbjct: 207 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 266
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
GPFIGAA+AA YHQ V+RA K+
Sbjct: 267 GPFIGAAVAAAYHQYVLRAAAIKA 290
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 183/264 (69%), Positives = 198/264 (75%), Gaps = 1/264 (0%)
Query: 24 AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+ L RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N + WDD WIFWV
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
GPFIGAA+AA YHQ V+RA K+
Sbjct: 271 GPFIGAAVAAAYHQYVLRAAAIKA 294
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 135/233 (57%), Gaps = 13/233 (5%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIFALVYCT 107
F+RA +AEF+A LF++IS+ + +G +KSN V ++ AFG I L
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 108 AGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXX 167
ISG H+NPAVT GL L+ ++S+ RA+ Y++ QC+GAI ++ G
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI--TSSLPDNSLG 127
Query: 168 XXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHL 227
+A G G GLG EIIGT LV V + TD +R RD + PL IGF+V L HL
Sbjct: 128 LNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHL 183
Query: 228 ATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
I TG GINPARS G+++I H + DHWIFWVGPFIGAALA L + ++
Sbjct: 184 LAIDYTGCGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 135/232 (58%), Gaps = 13/232 (5%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 108
F+RA +AEF+AT LF++IS+ + +G V +N ++ ++ AFG I L
Sbjct: 10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK-VSLAFGLSIATLAQSVG 68
Query: 109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXX 168
ISG H+NPAVT GL L+ ++S+ RAL Y++ QC+GAI ++ G
Sbjct: 69 HISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGI--TSSLTGNSLGR 126
Query: 169 XXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLA 228
+A G G GLG EIIGT LV V + TD +R RD + APL IG +V L HL
Sbjct: 127 NDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLL 182
Query: 229 TIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
I TG GINPARS G+A+I H + +HWIFWVGPFIG ALA L + ++
Sbjct: 183 AIDYTGCGINPARSFGSAVIT---HNFSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXX 170
SGGHINPAVT + RK+S+ +++FY+ QCLGAI GAG++ ++
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP IGA LA ALY V + K
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 237
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 132/237 (55%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 111 SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXX 170
SGGHINPAVT + RK+S+ +++FY+ QCLGAI GAG++ ++
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 166
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 167 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 222
Query: 231 PITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP IGA LA ALY V + K
Sbjct: 223 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 276
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 132/237 (55%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXX 170
SGGHINPAVT + RK+S+ +++FY+ QCLGAI GAG++ ++
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP IGA LA ALY V + K
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 237
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 130/229 (56%), Gaps = 11/229 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ +S+ + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 111 SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXX 170
SGGHINPAVT + RK+S+ +++FY+ QCLGAI GAG++ ++
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTM 118
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ + L IGF+V + HL I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAI 174
Query: 231 PITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA-ALYHQV 278
TG +NPARS G A+I W++HWI+WVGP IGA LA LY V
Sbjct: 175 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 15/229 (6%)
Query: 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 108
S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQALG 62
Query: 109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXX 168
+SGGHINPA+T L + ++SL RA FY+ Q +GAI GAG++ G
Sbjct: 63 PVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG--VAPLNARGNLAV 120
Query: 169 XXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFLVHL 227
+ + T+G + E+I TF L +F++TD++R++ P+ +P L IG +V L HL
Sbjct: 121 NALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHL 175
Query: 228 ATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYH 276
I TG +NPARS G A++ N+ HW+FWVGP +GA LAA+ +
Sbjct: 176 VGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILY 222
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 108
S SF+RA AEF A+ +++ + + + + +A AFG + LV
Sbjct: 6 SASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVG 60
Query: 109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXX 168
ISG H+NPAVTF + ++SL RA+ YMV Q LGA+ GA V+ +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGNLAL 118
Query: 169 XXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLA 228
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL
Sbjct: 119 NTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLF 174
Query: 229 TIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
+ TG G+NPARS AI+ + +HW++WVGP IGA L +L + ++
Sbjct: 175 GMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 108
S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVG 60
Query: 109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXX 168
ISG H+NPAVTF + ++SL RA+ Y+V Q LGA+ GA V+ +
Sbjct: 61 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLAL 118
Query: 169 XXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLA 228
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL
Sbjct: 119 NTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLF 174
Query: 229 TIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
+ TG G+NPARS AI+ + +HW++WVGP IGA L +L + ++
Sbjct: 175 GMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 108
S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 2 SASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVG 56
Query: 109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXX 168
ISG H+NPAVTF + ++SL RA+ Y+V Q LGA+ GA V+ +
Sbjct: 57 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLAL 114
Query: 169 XXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLA 228
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL
Sbjct: 115 NTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLF 170
Query: 229 TIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
+ TG G+NPARS AI+ + +HW++WVGP IGA L +L + ++
Sbjct: 171 GMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 14/230 (6%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
SF+RA AEF AT +++ + + + + +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 111 SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXX 170
SG H+NPAVTF + ++SL RA+ Y+V Q LGA+ GA V+ +
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNT 114
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 231 PITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
TG G+NPARS AI+ + +HW++WVGP IGA L +L + ++
Sbjct: 171 YYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 59 EFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG-----IAWAFGGMIFALVYCTAGISGG 113
EF+ TFLFL+ S + + + G I++ FG + V+ T +SGG
Sbjct: 51 EFVGTFLFLW-SAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGG 109
Query: 114 HINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAH 173
++NPAVT L LAR + R + Q + + AG +
Sbjct: 110 NLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAAS-----AMTPGEIAFANALGG 164
Query: 174 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPIT 233
G ++ GL E GT +L TV K A AP IG A+ + HL I T
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYT 219
Query: 234 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALA 272
G G+NPARS G A+ + HWI+W+GP +GA LA
Sbjct: 220 GAGLNPARSFGPAVAARSFPNY--HWIYWLGPILGAFLA 256
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A L+HL +IP+T T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 94 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 153
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+HL +IP+T T +NPARS AI GW +
Sbjct: 154 DKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQ 204
Query: 258 HWIFW 262
W FW
Sbjct: 205 LWFFW 209
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 54 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGG 113
R +AEF TF ++ + V + +G G+A AFG + + Y GISGG
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSA--VFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGG 88
Query: 114 HINPAVTFGLFLARKLSLTRALFYMVMQCLG-----------AICGAGV-VKGFMXXXXX 161
H NPAV+ GL +A + + + Y++ Q G A AG+ + GF
Sbjct: 89 HFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYG 148
Query: 162 XXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA 221
GY+ L EII T + + +T + A AP+ IG A
Sbjct: 149 EHS-------PGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLA 195
Query: 222 VFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DDHWIFWVGPFIGAALAAL 274
+ L+HL +IP+T T +NPARS G A+ GW W+FW+ P +G A A+
Sbjct: 196 LTLIHLISIPVTNTSVNPARSTGQALFVG---GWALQQLWLFWLAPIVGGAAGAV 247
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+HL +IP+T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+HL +IP+T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+HL +IP+T T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 22/244 (9%)
Query: 51 SFYRAGIAEFIATFLFLYI---SVLTVMGVVKSNTKCSTVGIQ-----------GIAWAF 96
S + IAEFI TF+ ++ S + + T + I I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 97 GGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156
G I A +Y ISG HINPAVT GL+ +K + Y++ Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 157 XXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPL 216
G + + AE++GTF+L+ T+ +R+ + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 217 PIGFAVFLVHLATIPITGTGINPARSLGAAI---IYNKDHGWDDHWIFWVGPFIGAALAA 273
IG V + I+G+ +NPAR+ G + I+ W+ + I+ +GP +GA LAA
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237
Query: 274 LYHQ 277
L +Q
Sbjct: 238 LTYQ 241
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+ L +IP+T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVV-------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199
A ++ GF GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 200 DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DD 257
D A AP+ IG A+ L+ L +IP+T +NPARS AI GW +
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQ 207
Query: 258 HWIFW 262
W FW
Sbjct: 208 LWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 47/262 (17%)
Query: 57 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHIN 116
IAEF+ T L ++ V V + ++ G I+ FG + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAAL---KVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 117 PAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYT 176
PAVT L+L + + ++V Q GA C A +V G H
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------THHIV 122
Query: 177 KGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSHVPILA 214
+G ++ GTF +L+ + + TD LA
Sbjct: 123 RGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LA 179
Query: 215 PLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--------DDHWIFWV--- 263
PL IG + ++ + P+TGT +NPAR G ++ GW D F V
Sbjct: 180 PLLIGLLIAVIGASMGPLTGTAMNPARDFGPK-VFAWLAGWGNVAFTGGRDIPYFLVPLF 238
Query: 264 GPFIGAALAAL-YHQVVIRAIP 284
GP +GA + A Y +++ R +P
Sbjct: 239 GPIVGAIVGAFAYRKLIGRHLP 260
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 57/267 (21%)
Query: 57 IAEFIATFLFLY-----ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGIS 111
IAEF+ T L ++ ++ L V G + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXV 171
G H+NPAVT L+L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------ 117
Query: 172 AHGYTKGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSH 209
H +G ++ GTF +L+ + + TD
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP 177
Query: 210 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--------DDHWIF 261
LAPL IG + ++ + P+TG +NPAR G ++ GW D F
Sbjct: 178 ---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPK-VFAWLAGWGNVAFTGGRDIPYF 233
Query: 262 WV---GPFIGAALAAL-YHQVVIRAIP 284
V GP +GA + A Y +++ R +P
Sbjct: 234 LVPLFGPIVGAIVGAFAYRKLIGRHLP 260
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 92 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGV 151
I AF I A++Y ISG HINPAVT L+ + + Y+V Q +GA G+ +
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 152 VKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVP 211
+ G G + E IGTF+L+ + +R+ P
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----P 173
Query: 212 ILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD-----HGWDDHWIFWVGPF 266
A L IG V + ITG+ +NPAR+ G Y D + W I+ +GP
Sbjct: 174 GFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPI 230
Query: 267 IGAALAA-LYH 276
+GA AA LY+
Sbjct: 231 VGAVAAAWLYN 241
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG----IAWAFGGMIFALVYCT 107
FY++ + EFI FL ++ + G + T G+ G + +G +F + +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEG---ATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61
Query: 108 AGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXX 167
A +SG H+N AV+ GL K L + Y Q LGA G V G
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQ 121
Query: 168 XXXVAHGYTKGDGLGA---EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFL 224
GA E+I T +L+ + D + H+ L+ + +G +
Sbjct: 122 FAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK-FHILKLSSV-VGLIILC 179
Query: 225 VHLATIPITGTGINPARSLGAA----IIYNKDHGWDDHWIFW---VGPFIGAALAALYHQ 277
+ + TG +NP+R LG+ I Y KD D++ FW V P +G+ + ++
Sbjct: 180 IGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYD 239
Query: 278 VVI 280
VI
Sbjct: 240 KVI 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,658,587
Number of Sequences: 62578
Number of extensions: 283067
Number of successful extensions: 709
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 34
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)