Query 023021
Match_columns 288
No_of_seqs 159 out of 2001
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 8E-49 1.7E-53 342.0 21.6 225 46-284 4-229 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 8.6E-47 1.9E-51 340.6 24.0 226 48-284 49-276 (296)
3 PTZ00016 aquaglyceroporin; Pro 100.0 1.7E-45 3.6E-50 333.1 24.9 226 50-283 47-292 (294)
4 PF00230 MIP: Major intrinsic 100.0 1.8E-45 3.9E-50 323.3 19.0 224 46-276 1-227 (227)
5 COG0580 GlpF Glycerol uptake f 100.0 8.6E-45 1.9E-49 315.7 21.6 225 51-281 3-240 (241)
6 PLN00166 aquaporin TIP2; Provi 100.0 2.2E-44 4.8E-49 319.0 23.9 224 48-282 13-238 (250)
7 PRK05420 aquaporin Z; Provisio 100.0 3.3E-44 7.2E-49 315.0 24.3 222 53-283 2-230 (231)
8 PLN00167 aquaporin TIP5; Provi 100.0 4.6E-44 1E-48 317.8 25.0 227 48-286 17-245 (256)
9 PLN00026 aquaporin NIP; Provi 100.0 4.5E-44 9.7E-49 322.3 23.5 218 49-283 67-284 (298)
10 PLN00027 aquaporin TIP; Provis 100.0 9.2E-44 2E-48 316.0 22.7 223 49-282 16-240 (252)
11 PLN00182 putative aquaporin NI 100.0 1.6E-43 3.4E-48 317.5 24.4 217 49-281 38-254 (283)
12 KOG0224 Aquaporin (major intri 100.0 1E-44 2.2E-49 318.3 13.8 229 49-284 28-278 (316)
13 PLN00183 putative aquaporin NI 100.0 2E-42 4.2E-47 309.4 23.0 250 16-284 9-259 (274)
14 cd00333 MIP Major intrinsic pr 100.0 1.3E-41 2.7E-46 299.1 20.6 220 54-279 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 4.7E-40 1E-44 286.8 19.3 214 58-276 1-216 (216)
16 PLN00182 putative aquaporin NI 99.8 8.5E-20 1.9E-24 164.2 10.4 132 14-156 122-253 (283)
17 KOG0223 Aquaporin (major intri 99.8 2.8E-20 6.1E-25 162.7 5.8 139 11-159 88-228 (238)
18 PLN00026 aquaporin NIP; Provi 99.8 1.8E-19 4E-24 162.7 9.3 131 14-156 151-281 (298)
19 cd00333 MIP Major intrinsic pr 99.8 4.3E-19 9.3E-24 156.1 7.3 136 13-154 80-227 (228)
20 PLN00183 putative aquaporin NI 99.8 1.7E-18 3.6E-23 155.3 10.4 134 14-159 125-258 (274)
21 PLN00184 aquaporin NIP1; Provi 99.7 6.9E-18 1.5E-22 152.8 9.8 135 14-157 134-273 (296)
22 TIGR00861 MIP MIP family chann 99.7 5.5E-18 1.2E-22 147.8 8.7 133 13-151 80-215 (216)
23 PLN00166 aquaporin TIP2; Provi 99.7 8.4E-17 1.8E-21 142.9 11.7 135 13-156 102-236 (250)
24 PLN00027 aquaporin TIP; Provis 99.7 9.1E-17 2E-21 143.0 10.7 135 14-157 105-239 (252)
25 PRK05420 aquaporin Z; Provisio 99.7 1.1E-16 2.3E-21 140.8 9.1 135 13-156 82-227 (231)
26 PLN00167 aquaporin TIP5; Provi 99.7 3.1E-16 6.6E-21 139.7 9.1 138 13-160 106-243 (256)
27 PTZ00016 aquaglyceroporin; Pro 99.7 3.4E-16 7.4E-21 142.0 9.1 138 14-158 130-291 (294)
28 PF00230 MIP: Major intrinsic 99.6 6E-16 1.3E-20 135.9 8.4 132 14-152 94-227 (227)
29 COG0580 GlpF Glycerol uptake f 99.6 9.7E-15 2.1E-19 127.6 9.1 135 14-156 88-239 (241)
30 KOG0224 Aquaporin (major intri 99.3 7.4E-12 1.6E-16 111.2 6.0 101 177-279 31-133 (316)
31 PRK10805 formate transporter; 88.7 19 0.0004 32.9 14.8 102 93-198 72-182 (285)
32 COG2116 FocA Formate/nitrite f 86.4 24 0.00053 31.7 17.1 181 93-286 68-263 (265)
33 PRK11562 nitrite transporter N 49.8 2E+02 0.0043 26.0 15.1 179 93-285 62-254 (268)
34 PF04632 FUSC: Fusaric acid re 49.3 2.9E+02 0.0062 27.7 15.8 33 124-156 379-411 (650)
35 PF08370 PDR_assoc: Plant PDR 31.9 91 0.002 21.8 3.9 37 240-279 9-46 (65)
36 PF03033 Glyco_transf_28: Glyc 31.6 17 0.00036 28.3 0.2 20 109-128 6-25 (139)
37 PF01226 Form_Nir_trans: Forma 31.5 3.7E+02 0.008 23.8 9.7 104 93-199 61-172 (250)
38 PRK12446 undecaprenyldiphospho 27.6 20 0.00044 33.3 0.0 22 106-127 6-27 (352)
39 PRK09713 focB putative formate 26.8 4.8E+02 0.01 23.7 16.4 76 124-199 99-182 (282)
40 KOG3415 Putative Rab5-interact 25.8 17 0.00036 28.3 -0.8 24 5-28 36-59 (129)
41 COG0730 Predicted permeases [G 23.6 4.9E+02 0.011 22.6 9.1 29 127-155 69-97 (258)
42 TIGR00790 fnt formate/nitrite 22.7 5.2E+02 0.011 22.6 9.5 82 116-197 68-157 (239)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-49 Score=341.96 Aligned_cols=225 Identities=53% Similarity=0.825 Sum_probs=199.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHH
Q 023021 46 ELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFL 125 (288)
Q Consensus 46 ~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~ 125 (288)
+.++++.+|++++||++|++++|.+|++.....+ .....+.+.+++++|+.++..+++++++||||+|||+|+++++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~ 80 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV 80 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence 3456789999999999999999999987765443 2334456778999999999999999999999999999999999
Q ss_pred hcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHh-hcccccc
Q 023021 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRS 204 (288)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~-~~~~~~~ 204 (288)
.+++++.++..|+++|++|+++|+.+.+.+.+ +.+.......+.+.++.+..|+++.|++.||.|++++++ .+|+++.
T Consensus 81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~ 159 (238)
T KOG0223|consen 81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTP-GQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS 159 (238)
T ss_pred hCCCcHHHhHHHHHHHHHHHHHHHHHHheecC-cccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence 99999999999999999999999999999984 333333344566788899999999999999999999999 6676664
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccCC
Q 023021 205 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIP 284 (288)
Q Consensus 205 ~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~~ 284 (288)
.+.|+.||+++...+++++++||++|||||+|||+++++ .|+++|+||+||++|+++++++||+++.+++
T Consensus 160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~ 229 (238)
T KOG0223|consen 160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDE 229 (238)
T ss_pred -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCcc
Confidence 478999999999999999999999999999999999985 5999999999999999999999999998773
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=8.6e-47 Score=340.59 Aligned_cols=226 Identities=28% Similarity=0.424 Sum_probs=186.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhc
Q 023021 48 TSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 127 (288)
Q Consensus 48 ~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g 127 (288)
.+.+++|++++||+|||+|+|++++++...... +...+...+++++|+++++.+++++++||+|+|||||+++++.+
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~---~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g 125 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN---DNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCG 125 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhC
Confidence 355788999999999999999999866432211 11234566788999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCC--CcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccC
Q 023021 128 KLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGG--GANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (288)
Q Consensus 128 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~ 205 (288)
+++|.++++||++|++|+++|+++++.+++......... ......|..+..++|+.|+++|++|++++++..++++..
T Consensus 126 ~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~ 205 (296)
T PLN00184 126 RFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI 205 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC
Confidence 999999999999999999999999999984321111110 011223345778999999999999999999886654321
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccCC
Q 023021 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIP 284 (288)
Q Consensus 206 ~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~~ 284 (288)
..+.|+.||+++.+.+++.+++||++|||||||||+++.+ .|+++||||+||++|+++|+++|++++..+.
T Consensus 206 -----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l~~~~~ 276 (296)
T PLN00184 206 -----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTVRYTDK 276 (296)
T ss_pred -----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHHhcCCC
Confidence 2367999999999999999999999999999999999864 7899999999999999999999999976443
No 3
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.7e-45 Score=333.07 Aligned_cols=226 Identities=28% Similarity=0.396 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCC
Q 023021 50 WSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKL 129 (288)
Q Consensus 50 ~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~ 129 (288)
++++|++++||+|||+++|+++++.......+ ...+...+++++|+.+++.+++++++||+|+|||||+++++.+++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i 123 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKF 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccC
Confidence 56889999999999999999988765432211 123455678999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCC-------------CcccccCCCCCcchhhHHHHHHHHHHHHHH
Q 023021 130 SLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGG-------------GANAVAHGYTKGDGLGAEIIGTFVLVYTVF 196 (288)
Q Consensus 130 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl 196 (288)
+|.+.+.|+++|++|+++|+++++.+++ +.++..+. +.....|+.+..++|+.|+++|++|+++++
T Consensus 124 ~~~~~~~YiiaQ~lGa~~ga~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~il 202 (294)
T PTZ00016 124 PWKKLPGYFVAQLLGAFVGAACVYGLYY-GFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVIL 202 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999983 32221111 112234566778999999999999999999
Q ss_pred hhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhC---CCCCCC----cceeeehhhHHHH
Q 023021 197 SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN---KDHGWD----DHWIFWVGPFIGA 269 (288)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~---~~~~w~----~~wvy~vap~~Ga 269 (288)
.++|+++... +...|+.||+.+..+.++.++.||++|||||||||+++.. ++..|+ ++||||+||++|+
T Consensus 203 a~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa 278 (294)
T PTZ00016 203 AITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGA 278 (294)
T ss_pred HhccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHH
Confidence 9988766432 2357999999999999999999999999999999999852 223454 6899999999999
Q ss_pred HHHHHHHHHHhccC
Q 023021 270 ALAALYHQVVIRAI 283 (288)
Q Consensus 270 i~a~~~~~~~~~~~ 283 (288)
++|+++|+++++.+
T Consensus 279 ~~aally~~ll~~~ 292 (294)
T PTZ00016 279 VLGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998553
No 4
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.8e-45 Score=323.32 Aligned_cols=224 Identities=40% Similarity=0.610 Sum_probs=190.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCC---CCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHH
Q 023021 46 ELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK---CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 122 (288)
Q Consensus 46 ~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~ 122 (288)
|.++++++|++++||+||++++|.++++.......... +...+...+++++|+.+...++.++++||+|+|||||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 35678899999999999999999998865543332211 122356677889999999999999999999999999999
Q ss_pred HHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhcccc
Q 023021 123 LFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 202 (288)
Q Consensus 123 ~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~ 202 (288)
.++.|+++|.+.+.|+++|++|+++|+.+.+.+++ +.........+.+.++.+..++++.|+++|++|+++++...+++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~ 159 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYP-DSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDK 159 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhccc-CcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccc
Confidence 99999999999999999999999999999999983 33233333455677788899999999999999999999999888
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHH
Q 023021 203 RSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYH 276 (288)
Q Consensus 203 ~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~ 276 (288)
+..+. +.+.|+.||+.+.+..+..++.||++|||||+|+|+++.+ .|+++|+||++|++|+++|+++|
T Consensus 160 ~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 160 RKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp SSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 76542 2478999999999999999999999999999999999974 49999999999999999999987
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-45 Score=315.73 Aligned_cols=225 Identities=34% Similarity=0.528 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCc
Q 023021 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLS 130 (288)
Q Consensus 51 ~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~ 130 (288)
+..|++++||+|||+|++.++++.......+.+....++..+++++|+.+.+.+|+++++||+|+|||||++.++.++++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 45778899999999999999998877765554555666777899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHHhcCccccccC------CCcccccCC-CCCcchhhHHHHHHHHHHHHHHhhccccc
Q 023021 131 LTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLG------GGANAVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKR 203 (288)
Q Consensus 131 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~-~s~~~~~~~E~i~T~iLv~~vl~~~~~~~ 203 (288)
|++++.||++|++|+++|+.+++.++.+ .++..+ .+.....|+ .+..+.|+.|+++|++|++++++.+++++
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~-~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~ 161 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYG-KILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGN 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 9999999999999999999999999944 333332 223334443 46688899999999999999999887555
Q ss_pred cCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHh---CC---CCCCCcceeeehhhHHHHHHHHHHHH
Q 023021 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY---NK---DHGWDDHWIFWVGPFIGAALAALYHQ 277 (288)
Q Consensus 204 ~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~---~~---~~~w~~~wvy~vap~~Gai~a~~~~~ 277 (288)
. + ..+.|+.||+.+..+.++.++.||.++|||||+||++++ +. +.++.|.|+||++|++|+++++++||
T Consensus 162 ~-~----~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~ 236 (241)
T COG0580 162 A-N----AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYK 236 (241)
T ss_pred c-c----ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHH
Confidence 4 1 238899999999999999999999999999999999953 21 11226899999999999999999999
Q ss_pred HHhc
Q 023021 278 VVIR 281 (288)
Q Consensus 278 ~~~~ 281 (288)
+++.
T Consensus 237 ~~~~ 240 (241)
T COG0580 237 LLLG 240 (241)
T ss_pred HHcc
Confidence 8764
No 6
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=2.2e-44 Score=318.99 Aligned_cols=224 Identities=34% Similarity=0.571 Sum_probs=185.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhhhhc-ccCCC-CCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHH
Q 023021 48 TSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNT-KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFL 125 (288)
Q Consensus 48 ~~~~~~r~~~~EfigTf~lv~~~~~~~~~~-~~~~~-~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~ 125 (288)
.+++.+|++++||++||+++|+++++.... ...+. .....+...+++++|+.+++.+++++++||+|+|||||+++++
T Consensus 13 ~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l 92 (250)
T PLN00166 13 FSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAI 92 (250)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 456788999999999999999999876532 11111 1112245567899999999999999999999999999999999
Q ss_pred hcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccC
Q 023021 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (288)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~ 205 (288)
.++++|.+.++||++|++|+++|+.+++.+++.+... .....++.+..++++.|+++|++|+++++...+++|+.
T Consensus 93 ~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~ 167 (250)
T PLN00166 93 GGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVP-----THGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKG 167 (250)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-----ccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999887332111 12234556778999999999999999999887655532
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhcc
Q 023021 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 282 (288)
Q Consensus 206 ~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~ 282 (288)
.. +.+.|+.||+.+....+..+++||++|||||+|||+++++ .|+++|+||+||++|+++++++|+.++..
T Consensus 168 ~~---~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l~~~ 238 (250)
T PLN00166 168 SL---GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDVFIG 238 (250)
T ss_pred cc---ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 11 3478999999999999999999999999999999999864 69999999999999999999999988643
No 7
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=3.3e-44 Score=314.99 Aligned_cols=222 Identities=30% Similarity=0.557 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccc
Q 023021 53 YRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLT 132 (288)
Q Consensus 53 ~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~ 132 (288)
+|++++||+|||+++|+++++....... +....+...+++++|+.+...+++++++||+|+|||||+++++.++++|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~--~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAF--PELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhccc--CCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHH
Confidence 6889999999999999998865432211 11123456679999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhcCcc-ccccC-----CCcc-cccCCCCCcchhhHHHHHHHHHHHHHHhhccccccC
Q 023021 133 RALFYMVMQCLGAICGAGVVKGFMGAGQ-YGRLG-----GGAN-AVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (288)
Q Consensus 133 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-~~~~~-----~~~~-~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~ 205 (288)
+.+.|+++|++|+++|+.+++.++.++. ++..+ .+.. ......+..++++.|+++|++|+++++...|+++.
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~- 158 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAP- 158 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 9999999999999999999998883321 11110 0001 11123466889999999999999999998876532
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccC
Q 023021 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAI 283 (288)
Q Consensus 206 ~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~ 283 (288)
....|+.+|+.+....++.+++||++|||||||+|+++.+ +-.|+++|+||++|++|+++++++|+++++.+
T Consensus 159 -----~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 159 -----AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred -----CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 2367999999999999999999999999999999999973 23456899999999999999999999998654
No 8
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=4.6e-44 Score=317.75 Aligned_cols=227 Identities=31% Similarity=0.474 Sum_probs=188.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhhhhccc--CCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHH
Q 023021 48 TSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFL 125 (288)
Q Consensus 48 ~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~ 125 (288)
..++.+|++++||+|||+++|+++++...... .+.+....+...+++++|+.+.+.+++++++||+|+|||||+++++
T Consensus 17 ~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 17 VTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAV 96 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 45678999999999999999999987653221 1111112346678999999999999999999999999999999999
Q ss_pred hcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccC
Q 023021 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (288)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~ 205 (288)
.++++|.++++|+++|++|+++|+.+++.++...... .....++.+..++++.|+++|++|+++++...|+++..
T Consensus 97 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~ 171 (256)
T PLN00167 97 GGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVP-----TYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGL 171 (256)
T ss_pred hCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcccccc-----ccccCcccchHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999999887322111 11223345667889999999999999999988765532
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccCCC
Q 023021 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPF 285 (288)
Q Consensus 206 ~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~~~ 285 (288)
.+...|+.+|+.+....++.+++||++|||||+|+|+++++ .|+++|+||+||++|+++++++|++++.+.++
T Consensus 172 ----~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~ 244 (256)
T PLN00167 172 ----LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQD 244 (256)
T ss_pred ----CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHHHhCCCcC
Confidence 13467999999999999999999999999999999999863 69999999999999999999999999976665
Q ss_pred C
Q 023021 286 K 286 (288)
Q Consensus 286 ~ 286 (288)
+
T Consensus 245 ~ 245 (256)
T PLN00167 245 D 245 (256)
T ss_pred C
Confidence 4
No 9
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=4.5e-44 Score=322.28 Aligned_cols=218 Identities=27% Similarity=0.398 Sum_probs=181.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcC
Q 023021 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARK 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~ 128 (288)
..+++|++++||+|||+|+|++++........ ....+...+++++|+++++.+++++++||+|+|||||+++++.++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~---~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKY---DGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 45688999999999999999998653322111 112345667899999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccCCCC
Q 023021 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDS 208 (288)
Q Consensus 129 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~ 208 (288)
++|.++|+||++|++|+++|+++++.++.+. . ..+. ..|+.+..++++.|+++|++|+++++...+++++.
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~-~---~~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~--- 214 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPF-M---SGGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAV--- 214 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---cCce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCCCc---
Confidence 9999999999999999999999999998432 1 1122 22466788999999999999999998765444321
Q ss_pred CCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccC
Q 023021 209 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAI 283 (288)
Q Consensus 209 ~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~ 283 (288)
....++.+|+++...+++.+++||++|||||+|+|+++.+ +|+++|+||+||++|+++++++|+.+...+
T Consensus 215 --~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~ 284 (298)
T PLN00026 215 --GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLRE 284 (298)
T ss_pred --CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2256899999999999999999999999999999999853 799999999999999999999999985433
No 10
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=9.2e-44 Score=315.99 Aligned_cols=223 Identities=33% Similarity=0.560 Sum_probs=184.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhcc-c-CCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHh
Q 023021 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVV-K-SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLA 126 (288)
Q Consensus 49 ~~~~~r~~~~EfigTf~lv~~~~~~~~~~~-~-~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~ 126 (288)
.+..+|++++||++||+++|.++++.+... . .+.+....+.+.+++++|+.+.+.+++.+++||+|+|||+|+++++.
T Consensus 16 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~ 95 (252)
T PLN00027 16 HPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG 95 (252)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh
Confidence 456789999999999999999998754321 1 11111123455679999999999999999999999999999999999
Q ss_pred cCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccCC
Q 023021 127 RKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206 (288)
Q Consensus 127 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~ 206 (288)
++++|.+.++|+++|++|+++|+.+++.+.+... .+.....++.+..++++.|+++|++|+++++....++++..
T Consensus 96 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~ 170 (252)
T PLN00027 96 GNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE-----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGD 170 (252)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999988763211 12233455677889999999999999999998754333221
Q ss_pred CCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhcc
Q 023021 207 DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRA 282 (288)
Q Consensus 207 ~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~ 282 (288)
.+.+.|+.+|+.+....++++++||++|||||+|||+++.+ .|+++|+||+||++|+++++++|++++..
T Consensus 171 ---~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 171 ---LGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred ---ccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 13478999999999999999999999999999999999864 69999999999999999999999999854
No 11
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=1.6e-43 Score=317.53 Aligned_cols=217 Identities=26% Similarity=0.462 Sum_probs=182.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcC
Q 023021 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARK 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~ 128 (288)
.++++|++++||+|||+|+|+++++.......+ ...+...+++++|+.+++.++.++++||+|+|||||+++++.++
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 456889999999999999999988655322211 12345667889999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccCCCC
Q 023021 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDS 208 (288)
Q Consensus 129 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~ 208 (288)
++|.++++||++|++|+++|+++++.+++... .+.....|+.+..++++.|+++|++|+++++...++++..
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~-----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~--- 186 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP-----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAV--- 186 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccC---
Confidence 99999999999999999999999999983211 1122233456778999999999999999999876544321
Q ss_pred CCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhc
Q 023021 209 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIR 281 (288)
Q Consensus 209 ~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~ 281 (288)
+...++.+|+.+.+..++.+++||+++||||+|+|+++.+ .|.++|+||++|++|+++|+++|+++..
T Consensus 187 --~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 187 --GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred --CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 2357899999999999999999999999999999999853 6999999999999999999999999974
No 12
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-44 Score=318.32 Aligned_cols=229 Identities=29% Similarity=0.426 Sum_probs=193.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcC
Q 023021 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARK 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~ 128 (288)
..++.|++++||+||++|++.++++++....++.+. ..+..+.+++|+.+++.+++.+.+||||+|||||+++++.||
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~--g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~ 105 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTG--GSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR 105 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCC--CceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC
Confidence 456899999999999999999999887766664332 334566888999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCc--------------ccccCCCCCcchhhHHHHHHHHHHHH
Q 023021 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGA--------------NAVAHGYTKGDGLGAEIIGTFVLVYT 194 (288)
Q Consensus 129 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~~~~~E~i~T~iLv~~ 194 (288)
++|.|+++|+++|++||++|++.+|.+| .+.+....++. +-|.|..+.+++|+.|+++|.+|+.+
T Consensus 106 ~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y-~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~ 184 (316)
T KOG0224|consen 106 LPWKKFPVYVLAQFIGAFLGAATVYGLY-YDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC 184 (316)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998 43333332221 12455678999999999999999999
Q ss_pred HHhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHh-----CCCCCC---CcceeeehhhH
Q 023021 195 VFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY-----NKDHGW---DDHWIFWVGPF 266 (288)
Q Consensus 195 vl~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~-----~~~~~w---~~~wvy~vap~ 266 (288)
+++++|++|... +.+.|+.+|+.+.++..+.+.++|..+||||||+||+++ +....+ ...|+.|++|+
T Consensus 185 l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl 260 (316)
T KOG0224|consen 185 LFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPL 260 (316)
T ss_pred eeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhh
Confidence 999999988432 368999999999999999999999999999999999983 211111 45789999999
Q ss_pred HHHHHHHHHHHHHhccCC
Q 023021 267 IGAALAALYHQVVIRAIP 284 (288)
Q Consensus 267 ~Gai~a~~~~~~~~~~~~ 284 (288)
+|+++++++|++++..+.
T Consensus 261 ~Gai~G~~iY~~~Ig~h~ 278 (316)
T KOG0224|consen 261 IGAILGGWIYDFFIGFHI 278 (316)
T ss_pred hhhhhhhhhheeeeeccC
Confidence 999999999999986544
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=2e-42 Score=309.43 Aligned_cols=250 Identities=26% Similarity=0.377 Sum_probs=196.6
Q ss_pred hhhhhhhhhhcccccccccCCCCCCCccc-ccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHH
Q 023021 16 TERQPIGTAAQSQDGKDYVEPPPAPLFEE-EELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAW 94 (288)
Q Consensus 16 ~~~q~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (288)
.+-|+.|.....+...+..+++. ..+- .-..+.+.+|++++||++||+++|+++++....... ....+...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~---~~~~~~~~~al 83 (274)
T PLN00183 9 DVDQEAGSTASTLNGDDHPKRQR--LFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLS---GGEVGLLEYAA 83 (274)
T ss_pred hhhhhhcCCCCcccCCCCchhhh--hccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCccchHHHHH
Confidence 45688887775543333322222 2221 112345778999999999999999998765432211 12234556788
Q ss_pred HHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCC
Q 023021 95 AFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHG 174 (288)
Q Consensus 95 a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (288)
++|+.+.+.+++++++||+|+|||||+++++.++++|.++|+||++|++|+++|+.+++.+++.+. ......|.
T Consensus 84 ~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~------~~~~~~p~ 157 (274)
T PLN00183 84 TAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA------DLMTTKPA 157 (274)
T ss_pred HHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999884321 11222344
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCC
Q 023021 175 YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHG 254 (288)
Q Consensus 175 ~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~ 254 (288)
.+..++++.|+++|++|++.++...+++++. ..+.++.+|+.+.+.+++.+++||++|||||+|+|+++. ..
T Consensus 158 ~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~ 229 (274)
T PLN00183 158 QGCSSAFWVEFIATFIVMFLAASLTSQPQSL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WD 229 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHhhheeeccccCC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CC
Confidence 4567899999999999999999887765322 235689999999999999999999999999999999975 37
Q ss_pred CCcceeeehhhHHHHHHHHHHHHHHhccCC
Q 023021 255 WDDHWIFWVGPFIGAALAALYHQVVIRAIP 284 (288)
Q Consensus 255 w~~~wvy~vap~~Gai~a~~~~~~~~~~~~ 284 (288)
|+++|+||++|++|+++++++||+++.+..
T Consensus 230 ~~~~wvy~vapilGailaa~l~~~l~~~~~ 259 (274)
T PLN00183 230 FKDIWIYITAPTIGAVAGALMFHLLRLRTQ 259 (274)
T ss_pred hhheehHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999985543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=1.3e-41 Score=299.07 Aligned_cols=220 Identities=41% Similarity=0.681 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccch
Q 023021 54 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTR 133 (288)
Q Consensus 54 r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~ 133 (288)
|++++||++||++++.++++......+++ ...+...+++++|+.+...++.++++||+|+|||+|+++++.++++|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHH
Confidence 56899999999999999987654332221 1223456789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCc--------ccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccC
Q 023021 134 ALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGA--------NAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (288)
Q Consensus 134 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~ 205 (288)
.++|+++|++|+++|+.+.+.++++ .++...... +.+.++.+..++++.|+++|++|+++++...++++..
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~ 157 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYG-LYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGP 157 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 9999999999999999999999843 322221111 2345566788999999999999999999988765432
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHH
Q 023021 206 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVV 279 (288)
Q Consensus 206 ~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~ 279 (288)
. .....++.+|+.+.+..+++++.||+++||||+++++++.+....|+++|+||++|++|+++|+++||++
T Consensus 158 ~---~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 158 P---PGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred C---CCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 1 1346799999999999999999999999999999999986322269999999999999999999999874
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=4.7e-40 Score=286.84 Aligned_cols=214 Identities=43% Similarity=0.743 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHhHhhhhcccCCC-CC-CCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhH
Q 023021 58 AEFIATFLFLYISVLTVMGVVKSNT-KC-STVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 135 (288)
Q Consensus 58 ~EfigTf~lv~~~~~~~~~~~~~~~-~~-~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~ 135 (288)
+||++||+++|+++++.......+. +. ...+...+++++|+.+...+++++++||+|+|||+|+++++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 5999999999999987665332211 11 111456679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHhhccccccCCCCCCCccch
Q 023021 136 FYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP 215 (288)
Q Consensus 136 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~~~~~l~~ 215 (288)
+|+++|++|+++|+.+.+.++.+ .++..........++.+..++++.|+++|++|+++++...+++++... ....+
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~~~~ 156 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSG-LFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GGFAP 156 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-cccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---CccHH
Confidence 99999999999999999998843 321111111222445678899999999999999999998776443222 23689
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHH
Q 023021 216 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYH 276 (288)
Q Consensus 216 ~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~ 276 (288)
+.+|+.+...++..+++||+++||||+|+++++. +...|+++|+||++|++|+++++.+|
T Consensus 157 ~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~-~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 157 LAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFA-GLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHHHHHhCCCCcccccCchhhhhHHHHh-ccccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999986 33579999999999999999999875
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.81 E-value=8.5e-20 Score=164.20 Aligned_cols=132 Identities=22% Similarity=0.234 Sum_probs=101.7
Q ss_pred cchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHH
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
.|+++|++|+++++...+...+.......... ...+.++.+++|+++||+|+++++.+... . +.. .. ..+
T Consensus 122 ~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~--p~~s~~~a~~~E~l~TfiLv~~i~~~~~~-~--~~~---~~--~~~ 191 (283)
T PLN00182 122 LYIGAQLTGSLLASLTLRLMFNVTPEAFFGTT--PTDSSGQALVAEIIISFLLMFVISGVATD-S--RAV---GE--LAG 191 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccceeeCC--CCcchHHHHHHHHHHHHHHHHHHHhheec-c--ccC---Cc--chh
Confidence 69999999999998865443322111111111 12356899999999999999988764321 1 111 11 147
Q ss_pred HHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 94 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 94 ~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
+++|+.+++.++..+++||+|+|||||+++++.++ .|.++|+||++|++|+++|+++++.+.
T Consensus 192 l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~~~wvY~vap~lGA~lgally~~l~ 253 (283)
T PLN00182 192 IAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYKGIWVYIVGPFVGIIAGGFVYNLIR 253 (283)
T ss_pred HHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-cccceeHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999865 689999999999999999999999887
No 17
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.80 E-value=2.8e-20 Score=162.69 Aligned_cols=139 Identities=21% Similarity=0.146 Sum_probs=110.8
Q ss_pred ccccchhhhhhhhhhcccccccccCCC--CCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcc
Q 023021 11 GANKFTERQPIGTAAQSQDGKDYVEPP--PAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG 88 (288)
Q Consensus 11 ~~~~y~~~q~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~ 88 (288)
+.--|+++|++|+++++..+|...+++ .............+..|.++.|++.||.++|.+++... +.++ .
T Consensus 88 ~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~-d~~~----~--- 159 (238)
T KOG0223|consen 88 RAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATAT-DPRR----S--- 159 (238)
T ss_pred HhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEee-cCCC----c---
Confidence 344699999999999999888888764 11111222223456789999999999999998775332 1111 1
Q ss_pred hhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCc
Q 023021 89 IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG 159 (288)
Q Consensus 89 ~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 159 (288)
...++++|+++.+.++..+++||++||||||+++++..+ .|+++|+||++|++|+++++.+++.++.++
T Consensus 160 -~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~-~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 160 -ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG-SWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred -ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc-CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 224899999999999999999999999999999999987 499999999999999999999999988444
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.79 E-value=1.8e-19 Score=162.74 Aligned_cols=131 Identities=23% Similarity=0.260 Sum_probs=102.7
Q ss_pred cchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHH
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
.|+++|++|+++++...+....+...... .....+..+.++.||++||+|+++++.+.. +.+ ... . ..+
T Consensus 151 ~YiiaQilGAi~aa~~~~~~~~~~~~~g~---t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~-~~~--~~~---~--~~~ 219 (298)
T PLN00026 151 AYIAAQVSASICASFALKGVFHPFMSGGV---TVPSVSTGQAFALEFIITFNLLFVVTAVAT-DTR--AVG---E--LAG 219 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCce---eeecccHHHHHHHHHHHHHHHHHhheeeec-CCC--CcC---C--ccc
Confidence 69999999999999876655543211111 112346789999999999999998775321 111 111 1 136
Q ss_pred HHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 94 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 94 ~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
+++|+.+++.++..+++||+|+|||||+++++..+ +|.++|+||++|++|+++|+.+++.+.
T Consensus 220 l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~~~~~wVy~vaPilGAilga~ly~~~~ 281 (298)
T PLN00026 220 IAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-NYRAIWIYLVAPTLGALAGAGTYTAVK 281 (298)
T ss_pred hHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-CchheeHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999986 899999999999999999999988875
No 19
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.77 E-value=4.3e-19 Score=156.07 Aligned_cols=136 Identities=23% Similarity=0.158 Sum_probs=101.9
Q ss_pred ccchhhhhhhhhhcccccccccCCCC-----CC-----CcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCC
Q 023021 13 NKFTERQPIGTAAQSQDGKDYVEPPP-----AP-----LFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNT 82 (288)
Q Consensus 13 ~~y~~~q~~G~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~ 82 (288)
--|+.+|++|+++++...+...+++. .. ........+.+.+|.++.|+++|+++++.++..... .++
T Consensus 80 ~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~--~~~- 156 (228)
T cd00333 80 IPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDD--PNG- 156 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccc--ccc-
Confidence 36999999999999875433322111 00 001112234577899999999999999988765421 111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCC--ccchhHHHHHHHhHHHHHHHHHHHH
Q 023021 83 KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKL--SLTRALFYMVMQCLGAICGAGVVKG 154 (288)
Q Consensus 83 ~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~--~~~~~~~yi~aQ~~Ga~~g~~~~~~ 154 (288)
.. .....++++|+.+....+..+++||+|+||||++++++.++. +|++.|+||++|++|+++|+.+++.
T Consensus 157 -~~--~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 157 -PP--PGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred -CC--CCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 00 112248899999999999999999999999999999999987 7999999999999999999988764
No 20
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.77 E-value=1.7e-18 Score=155.31 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=102.1
Q ss_pred cchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHH
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
-|+++|++|+++++...+........ ...+. ...+.++.++.|+++|+++++.++++.... . . .. .. .+
T Consensus 125 ~Yi~aQ~lGa~~ga~l~~~~~~~~~~-~~~~~--p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~--~-~-~~---~~-~~ 193 (274)
T PLN00183 125 LYITAQTVGSVLATYVGVSVYGVKAD-LMTTK--PAQGCSSAFWVEFIATFIVMFLAASLTSQP--Q-S-LG---HL-SG 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc-cccCC--CcccHHHHHHHHHHHHHHHHHhhheeeccc--c-C-CC---Cc-ee
Confidence 69999999999998864444332211 11111 112457899999999999999887643221 1 1 11 11 26
Q ss_pred HHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCc
Q 023021 94 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG 159 (288)
Q Consensus 94 ~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 159 (288)
+.+|+.+.+.+++.+++||+|+|||||+++++.+ .+|.++|+||++|++|+++++.+++.++.++
T Consensus 194 l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~~~~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 194 FVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDFKDIWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred hHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CChhheehHHHHHHHHHHHHHHHHHHHhccC
Confidence 7899999999999999999999999999999987 4899999999999999999999999998443
No 21
>PLN00184 aquaporin NIP1; Provisional
Probab=99.74 E-value=6.9e-18 Score=152.81 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=100.8
Q ss_pred cchhhhhhhhhhcccccccccCCCCC---CCcc--cccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcc
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPPPA---PLFE--EEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG 88 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~ 88 (288)
.|+++|++|+++++..++.....+.. .... .......+.++.++.|+++||+|+++++.+... ++ ... .
T Consensus 134 ~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~---~~-~~~--~ 207 (296)
T PLN00184 134 AYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATD---NR-AIG--E 207 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheecc---Cc-CCC--c
Confidence 69999999999998765433221110 0000 001112367899999999999999988764221 11 111 1
Q ss_pred hhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhc
Q 023021 89 IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (288)
Q Consensus 89 ~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 157 (288)
..++++|+++...++..+++||+++||||++++++... .|+.+|+||++|++|+++|+.+++.+..
T Consensus 208 --~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~~~~~WVy~vgPilGa~laal~y~~l~~ 273 (296)
T PLN00184 208 --LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-CYKGIWIYIVAPTLGAIAGAWVYNTVRY 273 (296)
T ss_pred --chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-cccccchHHhHHHHHHHHHHHHHHHHhc
Confidence 13789999999999999999999999999999999765 6889999999999999999999998874
No 22
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.74 E-value=5.5e-18 Score=147.84 Aligned_cols=133 Identities=22% Similarity=0.185 Sum_probs=99.0
Q ss_pred ccchhhhhhhhhhcccccccccCCCC-CCC-cccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchh
Q 023021 13 NKFTERQPIGTAAQSQDGKDYVEPPP-APL-FEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQ 90 (288)
Q Consensus 13 ~~y~~~q~~G~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~ 90 (288)
-.|+++|++|+++++...+....+.. .+. .........+.+|.++.|+++|+++++.++.+... ++ +... +.
T Consensus 80 ~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~--~~--~~~~-~~- 153 (216)
T TIGR00861 80 PVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDP--RN--RVPR-GG- 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecC--CC--CCCC-Cc-
Confidence 46999999999999886554433221 010 01111123467899999999999999988764321 11 1111 11
Q ss_pred HHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhc-CCccchhHHHHHHHhHHHHHHHHH
Q 023021 91 GIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR-KLSLTRALFYMVMQCLGAICGAGV 151 (288)
Q Consensus 91 ~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g-~~~~~~~~~yi~aQ~~Ga~~g~~~ 151 (288)
..++++|+.+...++..+++||+|+||||++++++.+ ..+|+++|+||++|++|+++++.+
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHh
Confidence 2489999999999999999999999999999999986 478999999999999999999875
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.70 E-value=8.4e-17 Score=142.88 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=102.8
Q ss_pred ccchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHH
Q 023021 13 NKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGI 92 (288)
Q Consensus 13 ~~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (288)
=-|+++|++|+++++...+....++..+..+. ....+..|.++.|+++||++++.++..... . ++. ... ...
T Consensus 102 ~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~-~-~~~---~~~-~~~ 173 (250)
T PLN00166 102 FFYWIAQCLGSIVACLLLVFVTNGESVPTHGV--AAGLGAIEGVVMEIVVTFALVYTVYATAAD-P-KKG---SLG-TIA 173 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccccc--CCCCcHHHHHHHHHHHHHHHHHHHHHhccc-c-ccc---ccc-cch
Confidence 36999999999999887655443222111111 123467899999999999999988764321 1 110 001 123
Q ss_pred HHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 93 AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
++++|+.+...++..++.||+++||||++++++..+ +|.++|+||++|++|+++++.+++.++
T Consensus 174 p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~~~~~wvywvgPi~Ga~~aa~~y~~l~ 236 (250)
T PLN00166 174 PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFSQIWIYWVGPLVGGALAGLIYGDVF 236 (250)
T ss_pred hHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-CCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999876 699999999999999999999998776
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.70 E-value=9.1e-17 Score=143.04 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=102.1
Q ss_pred cchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHH
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIA 93 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
.|+++|++|+++++...+.............. ...+.++.++.|+++||+|++.++.... +.++. ..+ ...+
T Consensus 105 ~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~-~~~~~----~~~-~~~p 176 (252)
T PLN00027 105 LYWIAQLLGSVVACLLLKFSTGGLETSAFSLS--SGVGVWNAFVFEIVMTFGLVYTVYATAV-DPKKG----DLG-IIAP 176 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCC--CCccHHHHHHHHHHHHHHHHHHHHHhcc-ccccC----Ccc-chHH
Confidence 69999999999998765433322111111111 2346789999999999999998865422 11111 111 1238
Q ss_pred HHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhc
Q 023021 94 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (288)
Q Consensus 94 ~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 157 (288)
+.+|+.+...++..++.||+.+||||++++++... +|.++|+||++|++|+++++.+++.++.
T Consensus 177 ~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~-~~~~~wvy~vgP~~Ga~laa~~y~~l~~ 239 (252)
T PLN00027 177 IAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWTNHWVYWAGPLIGGGIAGLVYELIFI 239 (252)
T ss_pred HHHHHHHHHHHHhcccccccccCcchhHHHHHHhh-cchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999876 6999999999999999999999998873
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.68 E-value=1.1e-16 Score=140.81 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=100.5
Q ss_pred ccchhhhhhhhhhcccccccccCCCCC-C-----C--c--ccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCC
Q 023021 13 NKFTERQPIGTAAQSQDGKDYVEPPPA-P-----L--F--EEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNT 82 (288)
Q Consensus 13 ~~y~~~q~~G~~~~~~~~~~~~~~~~~-~-----~--~--~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~ 82 (288)
-.|+++|++|+++++..++...+++.. + . . ........+..+.++.|+++||+|+++++.... .+.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~--~~~-- 157 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATD--KRA-- 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhC--CCC--
Confidence 369999999999998765543322110 0 0 0 001112346789999999999999998876432 111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcC-CccchhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 83 KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARK-LSLTRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 83 ~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~-~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
. .+ ..++.+|+.+....+..++.||+.+||||++++++..+ ..+.++|+||++|++|+++++.+++.++
T Consensus 158 ~---~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~ 227 (231)
T PRK05420 158 P---AG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLL 227 (231)
T ss_pred C---Cc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHh
Confidence 1 11 23889999999999999999999999999999999753 3456899999999999999999988887
No 26
>PLN00167 aquaporin TIP5; Provisional
Probab=99.66 E-value=3.1e-16 Score=139.69 Aligned_cols=138 Identities=20% Similarity=0.141 Sum_probs=103.4
Q ss_pred ccchhhhhhhhhhcccccccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHH
Q 023021 13 NKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGI 92 (288)
Q Consensus 13 ~~y~~~q~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (288)
=.|+++|++|+++++...+........+.... ....+.++.++.|+++|+++++..+... +.+.... . ...
T Consensus 106 ~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~E~i~T~~L~~~i~~~~--~~~~~~~----~-~~~ 176 (256)
T PLN00167 106 MFYWISQMLASVMACLFLKVTTVGQHVPTYKI--AEEMTGFGASVLEGVLTFGLVYTVYAAG--DPRRGLL----G-AIG 176 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccccc--CcccchHHHHHHHHHHHHHHHHHHHHhc--cccccCC----C-Ccc
Confidence 37999999999999886655433221111111 1123567889999999999999876532 2211111 1 123
Q ss_pred HHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCcc
Q 023021 93 AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQ 160 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~ 160 (288)
++.+|+.+....+..++.||+.+||||++++.+..+ +|.++|+||++|++|+++++.+++.++.++.
T Consensus 177 pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~ 243 (256)
T PLN00167 177 PLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQ 243 (256)
T ss_pred hHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-CccCcEEEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 788999999999999999999999999999999865 6889999999999999999999999885544
No 27
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.65 E-value=3.4e-16 Score=142.05 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=99.3
Q ss_pred cchhhhhhhhhhcccccccccCCC--------------CCCCccc-ccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPP--------------PAPLFEE-EELTSWSFYRAGIAEFIATFLFLYISVLTVMGVV 78 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~ 78 (288)
.|+++|++|++++++..+...++. .....+. ......+..+.++.|+++||+|+++++.+. +.
T Consensus 130 ~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~--d~ 207 (294)
T PTZ00016 130 GYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAIT--DP 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHhc--cC
Confidence 699999999999988643322110 0000000 001134678999999999999999887642 22
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhc-----CCccc----hhHHHHHHHhHHHHHHH
Q 023021 79 KSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR-----KLSLT----RALFYMVMQCLGAICGA 149 (288)
Q Consensus 79 ~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g-----~~~~~----~~~~yi~aQ~~Ga~~g~ 149 (288)
+++... + ..++++|+.+..+.+..++.||+.+||||++++++.. +..|. ++|+||++|++|+++|+
T Consensus 208 ~~~~~~---~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aa 282 (294)
T PTZ00016 208 NNCPAF---N--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGM 282 (294)
T ss_pred ccCCCc---C--cccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHH
Confidence 221111 1 1378899999889999999999999999999999973 33454 58999999999999999
Q ss_pred HHHHHHhcC
Q 023021 150 GVVKGFMGA 158 (288)
Q Consensus 150 ~~~~~~~~~ 158 (288)
++++.+.++
T Consensus 283 lly~~ll~~ 291 (294)
T PTZ00016 283 FLYDKFIPP 291 (294)
T ss_pred HHHHHHhCC
Confidence 999988744
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.63 E-value=6e-16 Score=135.89 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=98.1
Q ss_pred cchhhhhhhhhhcccccccccCCC--CCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhH
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEPP--PAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (288)
.|+++|++|+..|+...+...++. .............+..+.++.|+++|+++++....... .+++... +. .
T Consensus 94 ~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~--~~~~~~~---~~-~ 167 (227)
T PF00230_consen 94 VYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVAD--DKRKFPL---GP-L 167 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTS--TTSSSTS---SG-G
T ss_pred eEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcc--ccccccc---cc-c
Confidence 599999999999988655444431 11222222223446789999999999999998765432 2221111 11 2
Q ss_pred HHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHH
Q 023021 92 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 152 (288)
Q Consensus 92 ~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~ 152 (288)
.++.+|+.+.+..+..++.||+.+||||++++.+.... |.++|+||++|++|+++|+.++
T Consensus 168 ~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~-~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 168 APLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI-WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-HTTTTHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEeecccccccccccccCchhhcCceeeccc-CCeEEEEEehHHHHHHHHHhhC
Confidence 37889999998898889999999999999999998775 9999999999999999999864
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.56 E-value=9.7e-15 Score=127.65 Aligned_cols=135 Identities=21% Similarity=0.177 Sum_probs=98.3
Q ss_pred cchhhhhhhhhhcccccccccCC-------CCCCCcccccc--cchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCC
Q 023021 14 KFTERQPIGTAAQSQDGKDYVEP-------PPAPLFEEEEL--TSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKC 84 (288)
Q Consensus 14 ~y~~~q~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~ 84 (288)
.||++|++|+++++........+ ++....+..+. ...+..+.++.|+++||+|++.+.+... .++.
T Consensus 88 ~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~---~~~~-- 162 (241)
T COG0580 88 PYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTD---DGNA-- 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc---cCcc--
Confidence 59999999999998743222211 11222222222 2236788999999999999998776332 1111
Q ss_pred CCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHh----cCCcc----chhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 85 STVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLA----RKLSL----TRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 85 ~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~----g~~~~----~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
..+ ..++.+|+.++.+.+..++.||..+||||++++.+. +.... .+.|+||++|++|+++|+.+++.+.
T Consensus 163 -~~~--~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~ 239 (241)
T COG0580 163 -NAG--FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLL 239 (241)
T ss_pred -ccc--chHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHc
Confidence 111 238999999999999999999999999999999994 31111 5899999999999999999999775
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.25 E-value=7.4e-12 Score=111.15 Aligned_cols=101 Identities=29% Similarity=0.316 Sum_probs=81.2
Q ss_pred CcchhhHHHHHHHHHHHHHHhhccccccCCCCCC-CccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCC
Q 023021 177 KGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHV-PILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW 255 (288)
Q Consensus 177 ~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~~~-~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w 255 (288)
..|.++.||++|++|++.-++++.+..-.+..+. -.-..+.+|+++...+++++.+||+++|||.+|+.+++ ++.+|
T Consensus 31 l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~--g~~p~ 108 (316)
T KOG0224|consen 31 LLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCIL--GRLPW 108 (316)
T ss_pred HHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHh--cCCCh
Confidence 4577999999999999877766555443322211 23457788999999999999999999999999999998 67899
Q ss_pred CcceeeehhhHHHHHHHHH-HHHHH
Q 023021 256 DDHWIFWVGPFIGAALAAL-YHQVV 279 (288)
Q Consensus 256 ~~~wvy~vap~~Gai~a~~-~~~~~ 279 (288)
.++.+|.++|++||++|+. .|-+.
T Consensus 109 ~k~p~Y~~aQ~iGAF~gaa~~y~~y 133 (316)
T KOG0224|consen 109 KKFPVYVLAQFIGAFLGAATVYGLY 133 (316)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 44333
No 31
>PRK10805 formate transporter; Provisional
Probab=88.73 E-value=19 Score=32.85 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhccC-ccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhc-CccccccCCCc--
Q 023021 93 AWAFGGMIFALVYCTAG-ISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLGGGA-- 168 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~-~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~-~~~~~~~~~~~-- 168 (288)
++.+.+.+.++++.-.. .|| |--.++ ..+.+|.+|.+..-.|.-=.+|=++|++++-.+.. ........+..
T Consensus 72 ~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~ 147 (285)
T PRK10805 72 GICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGL 147 (285)
T ss_pred HHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHH
Confidence 44444444445554444 344 555443 35678888888774444444444444444333220 11111100000
Q ss_pred c--cc---cCCCCCcchhhHHHHHHHHHHHHHHhh
Q 023021 169 N--AV---AHGYTKGDGLGAEIIGTFVLVYTVFSA 198 (288)
Q Consensus 169 ~--~~---~~~~s~~~~~~~E~i~T~iLv~~vl~~ 198 (288)
. .. -.+.+..+.|+-=.+|-++....++..
T Consensus 148 ~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 148 NVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 012344566666667777777666644
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=86.41 E-value=24 Score=31.71 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhccCc-cccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcc--
Q 023021 93 AWAFGGMIFALVYCTAGI-SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGAN-- 169 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~~-sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~-- 169 (288)
++.+++.+.+++++-+.. || |--........++++|++.+--|+--.+|=++|++++..++.-.......++..
T Consensus 68 ~~~F~~GLilVv~~g~ELfT~---n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~ 144 (265)
T COG2116 68 GLVFSLGLILVVIAGSELFTS---NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGL 144 (265)
T ss_pred HHHHHHHHHHhhhhCcccccc---chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHH
Confidence 555555555556554432 21 333333445568899998888777777777777777666651111111111111
Q ss_pred -c--cc---CCCCCcchhhHHHHHHHHHHHHHHhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhH
Q 023021 170 -A--VA---HGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSL 243 (288)
Q Consensus 170 -~--~~---~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~ 243 (288)
. .. -+.+..+.|+.-.+|-++..+.++....-|... -+-+.+-+-++ .+......=...|-..--
T Consensus 145 ~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~-------~K~~~m~~pv~--~Fv~~GfeH~VANm~~i~ 215 (265)
T COG2116 145 FVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGA-------AKIFAIILPVM--LFVASGFEHSVANMFMIP 215 (265)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchh-------hHHHHHHHHHH--HHHHcCCceeeehHHHHH
Confidence 0 00 112234555555556666665555543322111 11223333333 333333333455532221
Q ss_pred HHHHHhCCCCCCCc-cee---e-ehhhHHH-HHHHHHHHHHHhccCCCC
Q 023021 244 GAAIIYNKDHGWDD-HWI---F-WVGPFIG-AALAALYHQVVIRAIPFK 286 (288)
Q Consensus 244 ~~~l~~~~~~~w~~-~wv---y-~vap~~G-ai~a~~~~~~~~~~~~~~ 286 (288)
+.....+...|.+ .+- + .+|.++| +++-++.|.++++.+..+
T Consensus 216 -~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 216 -WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred -HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 3333334556666 332 2 2566666 456778899888776543
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=49.78 E-value=2e+02 Score=25.96 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhccCc-cccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCc--cccccCCCc-
Q 023021 93 AWAFGGMIFALVYCTAGI-SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG--QYGRLGGGA- 168 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~~-sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~--~~~~~~~~~- 168 (288)
+..+++.+.++++.-... || |-....-..+.++.+|++..-.|.-=.+|=++|+.++..++... .........
T Consensus 62 g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~ 138 (268)
T PRK11562 62 GATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIV 138 (268)
T ss_pred HHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 444444445455443332 22 43333345667888888877666666666666666655543111 011000000
Q ss_pred ccc---cCCCCCcchhhHHHHHHHHHHHHHHhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHH
Q 023021 169 NAV---AHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGA 245 (288)
Q Consensus 169 ~~~---~~~~s~~~~~~~E~i~T~iLv~~vl~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~ 245 (288)
... -.+.+..+.|+-=.+|-++..+.++.....+ . . .++ +.+-+-+++-+.++ ..=...|= --+..
T Consensus 139 ~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~-~-~----gKi--~~i~~pI~~Fv~~G--FEH~IANm-~~~~l 207 (268)
T PRK11562 139 HSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTE-G-A----AKF--IAIWWCLLAFIASG--YEHSVANM-TLFAL 207 (268)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc-c-c----chh--HHHHHHHHHHHHcC--CcchhHhH-HHHHH
Confidence 000 0123445566666666677666666543221 1 1 122 22222223322222 22234452 23333
Q ss_pred HHHhCC--CCCCCc---ceee-ehhhHHHH-HHHHHHHHHHhccCCC
Q 023021 246 AIIYNK--DHGWDD---HWIF-WVGPFIGA-ALAALYHQVVIRAIPF 285 (288)
Q Consensus 246 ~l~~~~--~~~w~~---~wvy-~vap~~Ga-i~a~~~~~~~~~~~~~ 285 (288)
.++.+. ...|.+ .+++ .+|.++|+ ++-++.|.++++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~ 254 (268)
T PRK11562 208 SWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANR 254 (268)
T ss_pred HHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 333211 112221 1222 37888887 5667788888876664
No 34
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=49.34 E-value=2.9e+02 Score=27.73 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHhcCCccchhHHHHHHHhHHHHHHHHHHHHHh
Q 023021 124 FLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (288)
Q Consensus 124 ~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 156 (288)
.-....+-.....++.+.++|+.+|......++
T Consensus 379 fa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 379 FATLDNPAPALRLFLIGALLGAVLAFLYLFFVL 411 (650)
T ss_pred HcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455788888999999999999999998888
No 35
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=31.86 E-value=91 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.690 Sum_probs=21.2
Q ss_pred HhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHH-HHHHH
Q 023021 240 ARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAAL-YHQVV 279 (288)
Q Consensus 240 Ar~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~-~~~~~ 279 (288)
..++|-++....+..-+..| ||++ +|++++-. +++++
T Consensus 9 ~~tlG~~vL~~rG~~~~~~W-yWIg--vgaL~G~~vlFNil 46 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYW-YWIG--VGALLGFIVLFNIL 46 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcE-Eeeh--HHHHHHHHHHHHHH
Confidence 36788888743223334445 8876 56666643 45444
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.62 E-value=17 Score=28.33 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.1
Q ss_pred CccccccchHHHHHHHHhcC
Q 023021 109 GISGGHINPAVTFGLFLARK 128 (288)
Q Consensus 109 ~~sGah~NPavTl~~~~~g~ 128 (288)
.=|+||+||.+.++-.+.++
T Consensus 6 ~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHhcc
Confidence 34789999999999999854
No 37
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=31.55 E-value=3.7e+02 Score=23.81 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhccCc-cccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCc---
Q 023021 93 AWAFGGMIFALVYCTAGI-SGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGA--- 168 (288)
Q Consensus 93 ~~a~g~~v~~~~~~~~~~-sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~--- 168 (288)
++.+++.+..+++.-+.. || |-.......+.++.+|++..--|.--.+|=++|+.+.-.+.........++..
T Consensus 61 g~~F~~Gl~lIv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~~~ 137 (250)
T PF01226_consen 61 GLVFPIGLVLIVFLGGELFTG---NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMGEY 137 (250)
T ss_dssp HHHHTHHHHHHHHHT---TTT---TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHHHH
T ss_pred HHHHHHHHHHHHHhcchhccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 444555555555543332 22 55555566777888988877666666666666666665554111110000000
Q ss_pred -ccc---cCCCCCcchhhHHHHHHHHHHHHHHhhc
Q 023021 169 -NAV---AHGYTKGDGLGAEIIGTFVLVYTVFSAT 199 (288)
Q Consensus 169 -~~~---~~~~s~~~~~~~E~i~T~iLv~~vl~~~ 199 (288)
... -.+.+..+.|+.=.+|-++..+.++...
T Consensus 138 ~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~ 172 (250)
T PF01226_consen 138 LISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAF 172 (250)
T ss_dssp HHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1123445667777777777777776654
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=27.60 E-value=20 Score=33.34 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.5
Q ss_pred hccCccccccchHHHHHHHHhc
Q 023021 106 CTAGISGGHINPAVTFGLFLAR 127 (288)
Q Consensus 106 ~~~~~sGah~NPavTl~~~~~g 127 (288)
+.+.-||||+.||+.++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 3456789999999999999874
No 39
>PRK09713 focB putative formate transporter; Provisional
Probab=26.85 E-value=4.8e+02 Score=23.65 Aligned_cols=76 Identities=8% Similarity=0.035 Sum_probs=36.6
Q ss_pred HHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCc---c--cc---cCCCCCcchhhHHHHHHHHHHHHH
Q 023021 124 FLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGA---N--AV---AHGYTKGDGLGAEIIGTFVLVYTV 195 (288)
Q Consensus 124 ~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~---~--~~---~~~~s~~~~~~~E~i~T~iLv~~v 195 (288)
...++.+|++..-.|.-=.+|=++|++++-.++........+... . .. -.+.+..+.|+--.+|-++....+
T Consensus 99 ~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV 178 (282)
T PRK09713 99 KSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLAL 178 (282)
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 457888888877544444444444444443332111111100000 0 00 012345666777777777777766
Q ss_pred Hhhc
Q 023021 196 FSAT 199 (288)
Q Consensus 196 l~~~ 199 (288)
+...
T Consensus 179 ~~~~ 182 (282)
T PRK09713 179 WMSY 182 (282)
T ss_pred HHHh
Confidence 6543
No 40
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.81 E-value=17 Score=28.32 Aligned_cols=24 Identities=21% Similarity=0.046 Sum_probs=20.1
Q ss_pred ccccccccccchhhhhhhhhhccc
Q 023021 5 EEDVRLGANKFTERQPIGTAAQSQ 28 (288)
Q Consensus 5 ~~~~~~~~~~y~~~q~~G~~~~~~ 28 (288)
+|++...|--||.+|++|-+.|..
T Consensus 36 ~DKdellDViyW~rQVi~l~lGvi 59 (129)
T KOG3415|consen 36 PDKDELLDVIYWIRQVIGLILGVI 59 (129)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888999999999888654
No 41
>COG0730 Predicted permeases [General function prediction only]
Probab=23.57 E-value=4.9e+02 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=23.8
Q ss_pred cCCccchhHHHHHHHhHHHHHHHHHHHHH
Q 023021 127 RKLSLTRALFYMVMQCLGAICGAGVVKGF 155 (288)
Q Consensus 127 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~ 155 (288)
++.+|+....+..+=++|+.+|+.+...+
T Consensus 69 ~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 69 GNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56689999999999999999996666543
No 42
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=22.73 E-value=5.2e+02 Score=22.61 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=41.5
Q ss_pred chHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCc-cc-cccCC---Ccccc---cCCCCCcchhhHHHHH
Q 023021 116 NPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG-QY-GRLGG---GANAV---AHGYTKGDGLGAEIIG 187 (288)
Q Consensus 116 NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-~~-~~~~~---~~~~~---~~~~s~~~~~~~E~i~ 187 (288)
|-.......+.+|.+|.+..-.|.--.+|=++|+.+.-.+.... .. +..+. ..... -.+.+..+.|+.=.+|
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33333344667888888887666666666666666655443110 00 00000 00000 1123445666666666
Q ss_pred HHHHHHHHHh
Q 023021 188 TFVLVYTVFS 197 (288)
Q Consensus 188 T~iLv~~vl~ 197 (288)
-++..+.++.
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 6776666654
Done!