BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023022
(288 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224124030|ref|XP_002330087.1| predicted protein [Populus trichocarpa]
gi|222871221|gb|EEF08352.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/272 (79%), Positives = 244/272 (89%)
Query: 17 LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVA 76
++GY VEGLSI GHETCIIF SL++AFDIGRCP RA+SQ+FLFISHAHMDHIGGLPMYVA
Sbjct: 1 IEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 60
Query: 77 TRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKA 136
TRGLYRMKPPT++VP+CIKE VEQLFEVHRR+D SEL H L+ LDVG+EF +RKDL V+A
Sbjct: 61 TRGLYRMKPPTVVVPTCIKETVEQLFEVHRRLDGSELKHHLIALDVGQEFYVRKDLKVRA 120
Query: 137 FKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS 196
FKTYH IQSQGYVVYSVKQKLKQEYLGL G+EIK LKSSG EIT TVT+PE+AFTGDTMS
Sbjct: 121 FKTYHAIQSQGYVVYSVKQKLKQEYLGLSGNEIKSLKSSGVEITNTVTSPEIAFTGDTMS 180
Query: 197 DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
DFI+DE NIDVLRA++LVMEST+VD + TVE ARDYGHTHL EIV YA+KF+NKAILLIH
Sbjct: 181 DFIIDETNIDVLRAKVLVMESTFVDGTVTVEHARDYGHTHLFEIVNYADKFQNKAILLIH 240
Query: 257 FSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
FSAR+ V EI+ AV +P PLAGRVFALTEGF
Sbjct: 241 FSARYTVKEIQEAVQRLPQPLAGRVFALTEGF 272
>gi|297734015|emb|CBI15262.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/279 (75%), Positives = 243/279 (87%)
Query: 10 KSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIG 69
K +G+Q++GY VEGLSI G ETCII PSL LAFDIGRCP RA+SQ+FLFISH HMDHIG
Sbjct: 52 KKEKGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIG 111
Query: 70 GLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR 129
GLPMYVATRGLYRMKPP IIVP IKE+VE LF+VHR MD SEL H L+GL+VGEEF +R
Sbjct: 112 GLPMYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLR 171
Query: 130 KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA 189
KDL V+AF+TYHVI SQGYVVYSVKQKLKQEY+GLPG+EIK LK SG EITYT+TTPE+A
Sbjct: 172 KDLKVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIA 231
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
FTGDTMSDFI+D N+D L AR+L+MEST+VD++ TVE AR+YGHTHLSEIV YA++F+N
Sbjct: 232 FTGDTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQN 291
Query: 250 KAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
KAILLIHFSAR+ DEI+ AV A+P PL GRVFALTEGF
Sbjct: 292 KAILLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 330
>gi|225456689|ref|XP_002273058.1| PREDICTED: nuclear ribonuclease Z isoform 1 [Vitis vinifera]
Length = 290
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/279 (75%), Positives = 243/279 (87%)
Query: 10 KSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIG 69
K +G+Q++GY VEGLSI G ETCII PSL LAFDIGRCP RA+SQ+FLFISH HMDHIG
Sbjct: 12 KKEKGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIG 71
Query: 70 GLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR 129
GLPMYVATRGLYRMKPP IIVP IKE+VE LF+VHR MD SEL H L+GL+VGEEF +R
Sbjct: 72 GLPMYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLR 131
Query: 130 KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA 189
KDL V+AF+TYHVI SQGYVVYSVKQKLKQEY+GLPG+EIK LK SG EITYT+TTPE+A
Sbjct: 132 KDLKVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIA 191
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
FTGDTMSDFI+D N+D L AR+L+MEST+VD++ TVE AR+YGHTHLSEIV YA++F+N
Sbjct: 192 FTGDTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQN 251
Query: 250 KAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
KAILLIHFSAR+ DEI+ AV A+P PL GRVFALTEGF
Sbjct: 252 KAILLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 290
>gi|297839343|ref|XP_002887553.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
gi|297333394|gb|EFH63812.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/276 (76%), Positives = 241/276 (87%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+ MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLP
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLP 64
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVATRGLY+MKPPTIIVP IKE VE LFEVHR++D SEL H LVGLD+GEEF +RKDL
Sbjct: 65 MYVATRGLYKMKPPTIIVPKSIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKDL 124
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
VKAFKTYHVIQSQGYVVYS K KLKQEY+GL G+EIK LK+SG EIT ++TTPEVAFTG
Sbjct: 125 KVKAFKTYHVIQSQGYVVYSTKHKLKQEYIGLSGNEIKNLKASGVEITDSITTPEVAFTG 184
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT +DF+VDE+N D L+A++LVMEST++DDS +VE ARDYGH HLSEIV +A KFENKAI
Sbjct: 185 DTTADFVVDESNADALKAKVLVMESTFLDDSVSVEHARDYGHIHLSEIVNHAAKFENKAI 244
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LLIHFSAR+ V EI AV A+P PL GRVFALT+GF
Sbjct: 245 LLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
>gi|356575345|ref|XP_003555802.1| PREDICTED: nuclear ribonuclease Z-like [Glycine max]
Length = 279
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/278 (74%), Positives = 243/278 (87%)
Query: 11 SGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGG 70
+G+ ++++GY V GLSI GHETC+IFP+L +AFDIGRCP RA+SQNFL I+HAHMDHIGG
Sbjct: 2 TGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGG 61
Query: 71 LPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK 130
LPMYVATRGLYRMKPPTIIVP +KEDVE+LFE+HR+MD SEL H L+GLDVGEEF +RK
Sbjct: 62 LPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRK 121
Query: 131 DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAF 190
DL VKAF+TYHVI SQGY++YS KQKLK EY+GL G+EIK LKSSG EITYT+T PE+AF
Sbjct: 122 DLKVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAF 181
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
TGDTMSDFIVDE N DVLRARILV+E T+V++S TVE ARDYGHTHLSEI+ YAE +N+
Sbjct: 182 TGDTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNR 241
Query: 251 AILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
AILLIHFSAR+ V+EI+ AV A+P L+GR FALTEGF
Sbjct: 242 AILLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF 279
>gi|30699037|ref|NP_177608.2| nuclear ribonuclease Z [Arabidopsis thaliana]
gi|88984765|sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20975609|emb|CAD22100.1| RNase Z [Arabidopsis thaliana]
gi|90962972|gb|ABE02410.1| At1g74700 [Arabidopsis thaliana]
gi|332197502|gb|AEE35623.1| nuclear ribonuclease Z [Arabidopsis thaliana]
Length = 280
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/276 (75%), Positives = 240/276 (86%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+ MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLP
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLP 64
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+GEEF +RKDL
Sbjct: 65 MYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKDL 124
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEVAFTG
Sbjct: 125 KVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFTG 184
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDF+VDE N D L+A++LVMEST++DDS +VE ARDYGH H+SEIV +AEKFENKAI
Sbjct: 185 DTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENKAI 244
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LLIHFSAR+ V EI AV A+P PL GRVFALT+GF
Sbjct: 245 LLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
>gi|12324792|gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana]
Length = 281
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/277 (75%), Positives = 240/277 (86%), Gaps = 1/277 (0%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+ MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLP
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLP 64
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVG-EEFCMRKD 131
MYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+G EEF +RKD
Sbjct: 65 MYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRKD 124
Query: 132 LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFT 191
L VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEVAFT
Sbjct: 125 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 184
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT SDF+VDE N D L+A++LVMEST++DDS +VE ARDYGH H+SEIV +AEKFENKA
Sbjct: 185 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENKA 244
Query: 252 ILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
ILLIHFSAR+ V EI AV A+P PL GRVFALT+GF
Sbjct: 245 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 281
>gi|388522475|gb|AFK49299.1| unknown [Medicago truncatula]
Length = 335
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/282 (71%), Positives = 240/282 (85%)
Query: 7 EEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMD 66
E +K +G+ ++GY+VEGLSI GHETC++F +AFDIGRCP RA+S +FL ISHAHMD
Sbjct: 54 ESKKKSKGLNIEGYQVEGLSIGGHETCVVFSHFRVAFDIGRCPPRAVSMDFLLISHAHMD 113
Query: 67 HIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEF 126
HIGGLPMYVATRGLYRMKPPTIIVP +KEDVE+LFE+HR+MD SEL H LVGLDVGEEF
Sbjct: 114 HIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLVGLDVGEEF 173
Query: 127 CMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTP 186
+R DL VKAF+TYHVI SQGY++YSVK KLK EY+GL DEIKKLK SG EIT T+ P
Sbjct: 174 SLRHDLKVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSSDEIKKLKFSGVEITNTLKEP 233
Query: 187 EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
E+AFTGDTMSDFI+DE N DVLRA++LV+EST+V++ TVE ARDYGHTHL EI+ YA++
Sbjct: 234 EIAFTGDTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHLFEIISYADR 293
Query: 247 FENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+NKAILLIHFSAR+ V+EI++AV A+P PLAGR FALTEGF
Sbjct: 294 LQNKAILLIHFSARYTVEEIQQAVGALPPPLAGRTFALTEGF 335
>gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and gb|AI100542 come from this gene [Arabidopsis
thaliana]
Length = 290
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/286 (72%), Positives = 240/286 (83%), Gaps = 10/286 (3%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+ MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLP
Sbjct: 5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLP 64
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV-GEEFCMRKD 131
MYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+ GEEF +RKD
Sbjct: 65 MYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRKD 124
Query: 132 LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFT 191
L VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEVAFT
Sbjct: 125 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 184
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE---------IVE 242
GDT SDF+VDE N D L+A++LVMEST++DDS +VE ARDYGH H+SE IV
Sbjct: 185 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEKISYILKLQIVN 244
Query: 243 YAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+AEKFENKAILLIHFSAR+ V EI AV A+P PL GRVFALT+GF
Sbjct: 245 HAEKFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 290
>gi|255540937|ref|XP_002511533.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223550648|gb|EEF52135.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 269
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/256 (77%), Positives = 226/256 (88%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
M ++ Y +EGLSI GHETCII PSL+LAFDIGRCP RA+SQ+FLFISHAHMDHIGGLPMY
Sbjct: 1 MTIEEYPIEGLSIGGHETCIILPSLNLAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMY 60
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRGLYRMKPPTIIVP+ IKE VEQLFEVHR++D SELNH L+GLDVGEEF +RKDL V
Sbjct: 61 VATRGLYRMKPPTIIVPTSIKETVEQLFEVHRKLDGSELNHKLIGLDVGEEFYVRKDLKV 120
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+AF+TYH IQSQGYVVYS+K KLKQE+LGL G+EIK LK+SG EIT TVT PE+AFTGDT
Sbjct: 121 RAFRTYHAIQSQGYVVYSIKHKLKQEFLGLSGNEIKNLKASGVEITNTVTAPEIAFTGDT 180
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
MSDFI+DE NID LRARILVMEST++DD+ VE ARDYGHTHLSEIV YA++FENKAILL
Sbjct: 181 MSDFIIDETNIDALRARILVMESTFIDDTVKVEHARDYGHTHLSEIVNYADRFENKAILL 240
Query: 255 IHFSARHKVDEIRRAV 270
IHFSAR+ V+ I +
Sbjct: 241 IHFSARYTVEAIEHII 256
>gi|116785148|gb|ABK23610.1| unknown [Picea sitchensis]
Length = 291
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/276 (69%), Positives = 236/276 (85%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
RG Q+ GY +EGLSI G ETC+I P+L++AFDIGRCP RA++Q+FLFISH HMDHIGGLP
Sbjct: 16 RGRQIAGYSIEGLSIGGQETCVIVPTLNMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLP 75
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVATRGLY M+PPTI VP+ IKE VE+LFEVHR MDHSELNH LVGL+VGEE+ +RKDL
Sbjct: 76 MYVATRGLYNMRPPTIFVPAEIKEHVEKLFEVHRAMDHSELNHNLVGLNVGEEYQIRKDL 135
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ FKTYHVI SQGY++YSVKQKLK+EYLG D+IK LK SG EIT TV +PE+AFTG
Sbjct: 136 LVRPFKTYHVIPSQGYIIYSVKQKLKKEYLGRSSDDIKNLKFSGVEITDTVISPEIAFTG 195
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DTM++FIVD N+D +RA++L+ME+T+VDD+ T+E AR+YGHTHLSE+ +A++F+NKAI
Sbjct: 196 DTMAEFIVDPNNVDAMRAKLLIMETTFVDDAMTIEHAREYGHTHLSEVAAFADRFQNKAI 255
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LLIHFSAR++++EI+ AV +P L GRVF LTEGF
Sbjct: 256 LLIHFSARYRIEEIKAAVAKLPQTLFGRVFTLTEGF 291
>gi|168067069|ref|XP_001785449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662955|gb|EDQ49751.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/286 (65%), Positives = 236/286 (82%), Gaps = 4/286 (1%)
Query: 7 EEEKSGR----GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISH 62
E+ K GR +++ G +EG+S+ G ETCI+ P+L LAFDIGRCP RA+SQ+FLFISH
Sbjct: 10 EQLKLGRSKTGALEVDGLSIEGVSVGGQETCILIPALKLAFDIGRCPERAISQDFLFISH 69
Query: 63 AHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV 122
AHMDHIGG+ MYVATRGL++MKPPT+IVP C+K VE+LF+VHR +D SEL H L+GLD+
Sbjct: 70 AHMDHIGGVCMYVATRGLFKMKPPTVIVPKCLKPTVEKLFDVHRELDGSELKHQLIGLDI 129
Query: 123 GEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYT 182
GEEF M K+L VKAFKTYHV+ SQGYVVYSVK KLK EYLGLPG +IK+LK SG +IT T
Sbjct: 130 GEEFNMGKNLVVKAFKTYHVVPSQGYVVYSVKNKLKPEYLGLPGQKIKELKMSGVQITDT 189
Query: 183 VTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE 242
+ PEVAFTGDT DFI+D+ANID L+A++L+ME+T++DD+ T++ AR+YGHTHLSE+++
Sbjct: 190 LRVPEVAFTGDTTPDFILDDANIDALQAKLLIMETTFLDDAVTIQHAREYGHTHLSEVIK 249
Query: 243 YAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
YA + NK+IL IHFSAR+K +EI RAV+ +P PL GRV ALTEGF
Sbjct: 250 YANRLLNKSILFIHFSARYKREEILRAVEELPPPLQGRVAALTEGF 295
>gi|226492918|ref|NP_001152148.1| LOC100285786 [Zea mays]
gi|195653199|gb|ACG46067.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/287 (64%), Positives = 236/287 (82%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
A+ + K+ ++++GY V+G+SI G ETC+IFP+L LAFDIGRCP RA+SQ FLF+S
Sbjct: 16 ASASATRPKAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVS 75
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H H+DHIGGLPMYVATRGL+R++PPTI VP+C+++ VE+LFEVHR MD SELNH LV L+
Sbjct: 76 HGHLDHIGGLPMYVATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLE 135
Query: 122 VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181
VGEE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK+LK SG EIT
Sbjct: 136 VGEEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITN 195
Query: 182 TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
TV+TPE+AFTGDT +DFI+D N DVL+A+ILV+EST++DDS +VE AR+YGHTHL EI
Sbjct: 196 TVSTPEIAFTGDTTADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEIT 255
Query: 242 EYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
A+K +NKAILLIHFSAR+ +EI A++ +P RV+AL EGF
Sbjct: 256 SQADKLQNKAILLIHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302
>gi|194699324|gb|ACF83746.1| unknown [Zea mays]
gi|413925893|gb|AFW65825.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/287 (64%), Positives = 236/287 (82%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
A+ + K+ ++++GY V+G+SI G ETC+IFP+L LAFDIGRCP RA+SQ FLF+S
Sbjct: 16 ASASATRPKAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVS 75
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H H+DHIGGLPMYVATRGL+R++PPTI VP+C+++ VE+LFEVHR MD SELNH LV L+
Sbjct: 76 HGHLDHIGGLPMYVATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLE 135
Query: 122 VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181
VGEE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK+LK SG EIT
Sbjct: 136 VGEEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITN 195
Query: 182 TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
TV+TPE+AF+GDT +DFI+D N DVL+A+ILV+EST++DDS +VE AR+YGHTHL EI
Sbjct: 196 TVSTPEIAFSGDTTADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEIT 255
Query: 242 EYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
A+K +NKAILLIHFSAR+ +EI A++ +P RV+AL EGF
Sbjct: 256 SQADKLQNKAILLIHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302
>gi|357140188|ref|XP_003571652.1| PREDICTED: nuclear ribonuclease Z-like [Brachypodium distachyon]
Length = 306
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 229/273 (83%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
++++GY VEG+SI G ETC+IFP+L LAFDIGRCP RA+SQ+FLFISHAH+DHIGGLPMY
Sbjct: 33 LEIEGYPVEGISIGGQETCVIFPTLSLAFDIGRCPQRAVSQDFLFISHAHLDHIGGLPMY 92
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRGLYR++PPTI VP ++E VE+LF+VHR MD SEL HTLV L+VGEE+ +R+DL V
Sbjct: 93 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELKHTLVPLEVGEEYELRRDLKV 152
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KAFKTYHVI SQGYV+YSVKQKLKQE+LGLPG EIK+LK S EIT TVT PE+AFTGDT
Sbjct: 153 KAFKTYHVIPSQGYVIYSVKQKLKQEFLGLPGSEIKRLKLSDVEITNTVTVPEIAFTGDT 212
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
MSDFI+D N DVL+A+ILV+EST++DDS +VE AR+YGHTHL EI ++K +N+AILL
Sbjct: 213 MSDFILDPDNADVLKAKILVVESTFLDDSVSVEHAREYGHTHLFEIASQSDKLQNRAILL 272
Query: 255 IHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287
IHFSAR+ +EI A+ +P RV+AL EG
Sbjct: 273 IHFSARYTTEEIDAAISRLPPSFRSRVYALKEG 305
>gi|115445001|ref|NP_001046280.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|49387940|dbj|BAD25038.1| putative nuclear ribonuclease Z [Oryza sativa Japonica Group]
gi|113535811|dbj|BAF08194.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|125538607|gb|EAY85002.1| hypothetical protein OsI_06362 [Oryza sativa Indica Group]
Length = 302
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/274 (67%), Positives = 226/274 (82%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+ ++GY VEG+SI G ETC+IFP+L AFDIGRCP RA+SQ FLFISHAH+DHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRGLYR +PPTI +P+C+++ VE+LFE+HR MD SEL+H LV L++G+E +R+DL V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KAFKTYH I SQGYV+Y+VKQKLK EYLGLPG EIK+LK SG EIT T+T PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQGYVIYTVKQKLKPEYLGLPGSEIKQLKLSGVEITNTLTVPEIAFTGDT 208
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
M+DFI+D N DVL+A+ILV+EST+VDDS T+E AR+YGHTHL EI+ +K ENKAILL
Sbjct: 209 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILL 268
Query: 255 IHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
IHFSAR+ +EI A++ +P RV AL EGF
Sbjct: 269 IHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 302
>gi|449466917|ref|XP_004151172.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
gi|449515384|ref|XP_004164729.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
Length = 352
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/252 (71%), Positives = 219/252 (86%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+Q++GY ++GLSI GHETCIIFP+L+LAFDIGRCP +A+SQ+FLFISH HMDHIGGLP
Sbjct: 22 KGIQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQDFLFISHGHMDHIGGLP 81
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+YVATRGLY+M PPTIIVP IK DVE L EVHRR+D SEL L+GL+VGEE +R+DL
Sbjct: 82 LYVATRGLYKMGPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEELSLRRDL 141
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F+TYHVI SQGY++YSVKQKLK++YLGL G+EIKKL+ SG EITYT+T PEVAFTG
Sbjct: 142 KVRVFRTYHVIDSQGYLLYSVKQKLKKDYLGLSGNEIKKLRLSGVEITYTITEPEVAFTG 201
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFIVDE NIDVLRA+ILVMEST++++ VE AR+YGHTHL EI+ +A+KF+NKAI
Sbjct: 202 DTTSDFIVDENNIDVLRAKILVMESTFLENRVKVEHAREYGHTHLFEIINHAKKFKNKAI 261
Query: 253 LLIHFSARHKVD 264
LLIHFSAR+ +
Sbjct: 262 LLIHFSARYTTE 273
>gi|242064700|ref|XP_002453639.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
gi|241933470|gb|EES06615.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
Length = 315
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/294 (62%), Positives = 234/294 (79%), Gaps = 7/294 (2%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
A+ + K+ M+++GY V+G+SI G ETC+IFP+L LAFDIGRCP RA+SQ FLF+S
Sbjct: 22 ASASATRPKAKHRMEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVS 81
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H H+DHIGGLPMYVATRGL+R++PPTI VP+C++E VE+LFEVHR +D SELNH LV L+
Sbjct: 82 HGHLDHIGGLPMYVATRGLFRLRPPTIFVPACLRELVERLFEVHRAIDQSELNHNLVPLE 141
Query: 122 VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181
VGEE+ R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK LK SG EIT
Sbjct: 142 VGEEYEFRRDLKVRAFRTYHTIPSQGYVIYSVKQKLKQEFIGLPGSEIKHLKLSGVEITN 201
Query: 182 TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHL---- 237
TV+TPE+AFTGDT +DFI+D N DVL+A+ILV+EST++DDS +VE AR+YGHTHL
Sbjct: 202 TVSTPEIAFTGDTTADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLYEYL 261
Query: 238 ---SEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
++I ++K NKAILLIHFSAR+ +EI A++ +P RV+AL EGF
Sbjct: 262 PLETQIASQSDKLGNKAILLIHFSARYTTEEIDAAINRLPPSFRSRVYALKEGF 315
>gi|302764956|ref|XP_002965899.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
gi|300166713|gb|EFJ33319.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
Length = 299
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/289 (62%), Positives = 225/289 (77%), Gaps = 4/289 (1%)
Query: 4 KAKEEEKSGR----GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLF 59
K K + GR + G+ VEG+SI GHETC+I PS+ +AFDIGRCP RA+SQ+FLF
Sbjct: 10 KLKSSVRGGRRDLASVNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLF 69
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVG 119
ISH+HMDHIGG+ MYVATRGLY MKPPTI VPS IK VE+LF+V+R +D +EL+ LVG
Sbjct: 70 ISHSHMDHIGGIAMYVATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVG 129
Query: 120 LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEI 179
LD+GEE+ + K VK FKTYHVI SQGY++Y+VK KLK EY+GLPGD+IK L+ SG E+
Sbjct: 130 LDIGEEYDLGKGYIVKPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEV 189
Query: 180 TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE 239
T +PEVAFTGDT DFI DE N DVLRA++L+ME+T+++DS TVE AR+YGH+HLSE
Sbjct: 190 TNVTRSPEVAFTGDTTVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSE 249
Query: 240 IVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
IV ++KF+NKAILLIHFSAR+ EI A++ +P L R +ALTEGF
Sbjct: 250 IVALSDKFQNKAILLIHFSARYSKQEIIEAIEKLPETLKSRTYALTEGF 298
>gi|302802780|ref|XP_002983144.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
gi|300149297|gb|EFJ15953.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
Length = 308
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/298 (60%), Positives = 225/298 (75%), Gaps = 13/298 (4%)
Query: 4 KAKEEEKSGR----GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLF 59
K K + GR + G+ VEG+SI GHETC+I PS+ +AFDIGRCP RA+SQ+FLF
Sbjct: 10 KLKSSVRGGRRDLASVNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLF 69
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVG 119
ISH+HMDHIGG+ MYVATRGLY MKPPTI VPS IK VE+LF+V+R +D +EL+ LVG
Sbjct: 70 ISHSHMDHIGGIAMYVATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVG 129
Query: 120 LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEI 179
LD+GEE+ + K VK FKTYHVI SQGY++Y+VK KLK EY+GLPGD+IK L+ SG E+
Sbjct: 130 LDIGEEYDLGKGYIVKPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEV 189
Query: 180 TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE 239
T +PEVAFTGDT DFI DE N DVLRA++L+ME+T+++DS TVE AR+YGH+HLSE
Sbjct: 190 TNVTRSPEVAFTGDTTVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSE 249
Query: 240 ---------IVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
IV ++KF+NKAILLIHFSAR+ EI A++ +P L R +ALTEGF
Sbjct: 250 AKLSNVLFQIVALSDKFQNKAILLIHFSARYSKQEIIEAIEKLPETLKSRTYALTEGF 307
>gi|225447197|ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera]
gi|297739240|emb|CBI28891.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 168/293 (57%), Positives = 227/293 (77%), Gaps = 6/293 (2%)
Query: 2 ATKAKEEEKSGR------GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQ 55
A + +EE + R G+ L+GY +EG+SI GHETC+I P L AFDIGRCPSRA+ Q
Sbjct: 57 AIEEEEEYRKARAEVARNGVDLEGYSIEGISIGGHETCVIIPELKSAFDIGRCPSRAIQQ 116
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
NFLFI+HAH+DHIGGLPMYVATRGLY +KPPTI VP CIKEDVE+LF++HR + EL
Sbjct: 117 NFLFITHAHLDHIGGLPMYVATRGLYNLKPPTIFVPPCIKEDVEKLFDIHRALSQVELKL 176
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175
LV LDVGE + MR +L V+ FKT+HVI SQGYV+Y+V++KLK++Y+ L G +I+KLK+S
Sbjct: 177 DLVALDVGETYEMRNNLVVRPFKTHHVIPSQGYVIYTVRKKLKKQYIHLKGKQIEKLKNS 236
Query: 176 GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
G EIT T+ +PEVAFTGDT SDF+++ N D LRA++L+ E+T++D+ +++ AR++GHT
Sbjct: 237 GIEITDTILSPEVAFTGDTRSDFMLEPRNADALRAKVLITEATFLDNGISIDHAREHGHT 296
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
HL EI+E AE NKA+LL HFS+R+ +++IR+AV + + ++ RV L EGF
Sbjct: 297 HLFEIIENAEWIRNKAVLLTHFSSRYHIEDIRKAVSKLQSKVSARVVPLMEGF 349
>gi|357493079|ref|XP_003616828.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518163|gb|AES99786.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 357
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 157/276 (56%), Positives = 216/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L+GY +EG+SI GHETCII P AFDIGRCP+RA+ QNF+FI+HAH+DHIGGLP
Sbjct: 77 KGLDLEGYSIEGVSIGGHETCIIIPEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ +RGLY +KPPT+ VP CIK+DV++L +VH+ + ELN LV LDVGE + +R DL
Sbjct: 137 MYIGSRGLYNLKPPTVFVPPCIKDDVQKLLDVHKTLGQVELNCELVALDVGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F+T HVI SQGY+VYS+++KL+++Y L G +I+KLK SG EIT T+ +PEVAFTG
Sbjct: 197 VVRPFRTQHVIPSQGYIVYSIRKKLRKQYSHLNGKQIEKLKKSGVEITDTILSPEVAFTG 256
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDF++D N D LRA++L+ E+T++DDSTTVE AR +GHTH+SE++E A+ NK +
Sbjct: 257 DTTSDFMLDPLNADALRAKVLITEATFLDDSTTVEHARQHGHTHISELIENAQWIRNKTV 316
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ +++IR+A + + + +V LTEGF
Sbjct: 317 LLTHFSSRYNIEDIRQAASELQSKTSAKVVPLTEGF 352
>gi|449444739|ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 216/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L+GY +EG+S+ G ETC+I P AFDIGRCPSRA+ QNF+FI+HAH+DHIGGLP
Sbjct: 68 KGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGLP 127
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY + PPT+ +P+ IKEDVE+L E+HR M EL+ LV LDVGE + MR +L
Sbjct: 128 MYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVALDVGETYEMRNNL 187
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+AF+T+HVI SQGYV+YSV++KLK++Y+ L G +I+KLK SG EIT T+ +PEVAFTG
Sbjct: 188 VCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEITDTILSPEVAFTG 247
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT DF++D N D LRA+IL+ E+T++D++ ++E AR +GHTH+ EI+E A+ NKAI
Sbjct: 248 DTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFEIIENAQWIRNKAI 307
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ +++IR+AV + + L +V LTEGF
Sbjct: 308 LLTHFSSRYHIEDIRKAVSKLQSNLTAKVVPLTEGF 343
>gi|449481110|ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 157/276 (56%), Positives = 216/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L+GY +EG+S+ G ETC+I P AFDIGRCPSRA+ QNF+FI+HAH+DHIGGLP
Sbjct: 68 KGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGLP 127
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY + PPT+ +P+ IKEDVE+L E+HR M EL+ LV LDVGE + MR +L
Sbjct: 128 MYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVALDVGETYEMRNNL 187
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+AF+T+HVI SQGYV+YSV++KLK++Y+ L G +I+KLK SG EIT T+ +PEVAFTG
Sbjct: 188 VCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEITDTILSPEVAFTG 247
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT DF++D N D LRA+IL+ E+T++D++ ++E AR +GHTH+ EI+E A+ NKAI
Sbjct: 248 DTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFEIIENAQWIRNKAI 307
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ +++IR+AV + + + +V LTEGF
Sbjct: 308 LLTHFSSRYHIEDIRKAVSKLQSNVTAKVVPLTEGF 343
>gi|255576109|ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 361
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 216/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L+GY +EGLSI G ETC+I P AFDIGRCPSRA+ QNF+FI+HAH+DHIGGLP
Sbjct: 81 KGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSRAIHQNFVFITHAHLDHIGGLP 140
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY +KPPT+ VP CIKEDVE+LF++HR M ELN LV LDVGE + +R ++
Sbjct: 141 MYVASRGLYNLKPPTVFVPPCIKEDVEKLFDIHRSMGQVELNLELVALDVGETYELRNNV 200
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F+T HVI SQGYV+YSV++KLK++Y L G +I+KLK SG EIT + +PEVAFTG
Sbjct: 201 VVRPFRTQHVIPSQGYVIYSVRKKLKKQYTHLKGKQIEKLKKSGVEITDIMLSPEVAFTG 260
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT +++++D N D LRA++L+ E+T++D+ ++E AR +GHTHL EI+E AE NK++
Sbjct: 261 DTTAEYMLDPHNADALRAKVLITEATFLDEGFSIEHARQHGHTHLLEIIENAEWIRNKSV 320
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ V++IR+AV + + ++ +V LTEGF
Sbjct: 321 LLTHFSSRYTVEDIRQAVLKLQSKVSAKVVPLTEGF 356
>gi|125564150|gb|EAZ09530.1| hypothetical protein OsI_31806 [Oryza sativa Indica Group]
Length = 365
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 156/276 (56%), Positives = 217/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETC+ PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 85 KGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRGPLFAVSQDYLFITHAHLDHIGGLP 144
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPP + VP CIK+DVE L ++HRRM +L LV LD+GE F +R DL
Sbjct: 145 MYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRMSQVDLKVELVALDLGETFEIRNDL 204
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+T+H I SQGYV+YSV++KLK++Y L G++I K+K SG EIT T+ PEVAFTG
Sbjct: 205 VARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQIMKMKQSGAEITDTILYPEVAFTG 264
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD V+ AR++GH HLSEI+E+++ F NKAI
Sbjct: 265 DTKSDFILDPQNADALRAKVLITEATFLDDQIDVDHAREHGHMHLSEIMEHSQWFRNKAI 324
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + + L+ +V ALTEGF
Sbjct: 325 VLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
>gi|242049624|ref|XP_002462556.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
gi|241925933|gb|EER99077.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
Length = 359
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 214/276 (77%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY VEG+S+ GHETC+ PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 79 KGVEVEGYAVEGISVGGHETCVTVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 138
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CIK+DVE L +VHRRM EL LV LD+GE + +R DL
Sbjct: 139 MYIATRGLYNLKPPTVFVPPCIKDDVEDLLQVHRRMSQIELKVELVALDLGETYEIRNDL 198
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTEIT T+ PEVAFTG
Sbjct: 199 VARPFQTYHAIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 258
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD VE AR++GH HLSEI+E+++ F N+ I
Sbjct: 259 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHSQWFRNETI 318
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++I +AV + L ++ ALTEGF
Sbjct: 319 VLTHFSNRYSLEDIHQAVSRLQPKLNSKIVALTEGF 354
>gi|297727071|ref|NP_001175899.1| Os09g0482680 [Oryza sativa Japonica Group]
gi|215697960|dbj|BAG92124.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678994|dbj|BAH94627.1| Os09g0482680 [Oryza sativa Japonica Group]
Length = 365
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 156/276 (56%), Positives = 217/276 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETC+ PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 85 KGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRGPLFAVSQDYLFITHAHLDHIGGLP 144
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPP + VP CIK+DVE L ++HRRM +L LV LD+GE F +R DL
Sbjct: 145 MYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRMSQVDLKVELVALDLGETFEIRNDL 204
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+T+H I SQGYV+YSV++KLK++Y L G++I K+K SG EIT T+ PEVAFTG
Sbjct: 205 VARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQIMKMKQSGAEITDTILYPEVAFTG 264
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD V+ AR++GH HLSEI+E+++ F NKAI
Sbjct: 265 DTKSDFILDPRNADALRAKVLITEATFLDDQIDVDHAREHGHMHLSEIMEHSQWFRNKAI 324
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + + L+ +V ALTEGF
Sbjct: 325 VLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
>gi|356501243|ref|XP_003519435.1| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max]
Length = 354
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 210/274 (76%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+ L+GY +EGLS+ G ETCII P FDIGRCPSRA+ QNFLFI+HAH+DHIGGLPMY
Sbjct: 76 LDLEGYSIEGLSVGGQETCIIIPEFKCTFDIGRCPSRAIQQNFLFITHAHLDHIGGLPMY 135
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VA+RGL+ +KPPT+ VP CIKEDVE+L ++HR M ELN +V LDVGE + +R +L V
Sbjct: 136 VASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEVVALDVGETYEIRNNLVV 195
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+ F+T HVI SQGYVVYS+++KL+++Y L G +I+KLK SG EIT + +PEVAFTGDT
Sbjct: 196 RPFRTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGIEITDMILSPEVAFTGDT 255
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
SDF++D N D LRA+IL+ E+T++DDS +++ AR +GHTHL EI+ A+ NKA+LL
Sbjct: 256 TSDFMLDPCNADALRAKILITEATFLDDSFSIDHARQHGHTHLFEIIANAQWIRNKAVLL 315
Query: 255 IHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
HFS R+ +++IR+A + + L+ +V LTEGF
Sbjct: 316 THFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGF 349
>gi|224131708|ref|XP_002321158.1| predicted protein [Populus trichocarpa]
gi|222861931|gb|EEE99473.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 159/276 (57%), Positives = 213/276 (77%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L GY +EGLSI G ETCII P AFDIGRCP+RA+ QNF+FI+HAH+DHIGGLP
Sbjct: 86 KGIDLGGYAIEGLSIGGQETCIIIPEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLP 145
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY +KPPTI VP CIK+DVE+LF++HR M ELN LV LDVGE + +R D+
Sbjct: 146 MYVASRGLYSLKPPTIFVPPCIKDDVEKLFDIHRAMGQVELNFDLVALDVGETYELRNDV 205
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F+T HVI SQGYV+YSV++KLK++Y+ L G +I+KLK SG EIT + +PEVAFTG
Sbjct: 206 VVRPFRTQHVIPSQGYVIYSVRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 265
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT +++++D N D LRA++L+ E+T++D+ T E AR GHTHL EI+E A+ +KAI
Sbjct: 266 DTTAEYMLDPRNADALRAKVLITEATFLDEDFTTEHARQRGHTHLFEIIENAKWIRSKAI 325
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ +++IR AV + + ++ +V LTEGF
Sbjct: 326 LLTHFSSRYSIEDIREAVSKLQSRVSAKVVPLTEGF 361
>gi|195656759|gb|ACG47847.1| nuclear ribonuclease Z [Zea mays]
Length = 357
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 213/276 (77%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTEIT T+ PEVAFTG
Sbjct: 197 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 256
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD VE AR++GH HLSEI+E+ + F N+ I
Sbjct: 257 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 316
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + L +V ALTEGF
Sbjct: 317 VLTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGF 352
>gi|363806948|ref|NP_001242565.1| uncharacterized protein LOC100807082 [Glycine max]
gi|255636804|gb|ACU18735.1| unknown [Glycine max]
Length = 353
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 214/285 (75%)
Query: 4 KAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHA 63
+ + S + + L+GY +EGLS+ G ETCII P +FDIGRCPSRA+ QNFLFI+HA
Sbjct: 64 RVARSQVSRKVLDLEGYSIEGLSVGGQETCIIIPEFKCSFDIGRCPSRAIQQNFLFITHA 123
Query: 64 HMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVG 123
H+DHIGGLPMYVA+RGL+ +KPPT+ VP CIKEDVE+L ++HR M ELN +V LDVG
Sbjct: 124 HLDHIGGLPMYVASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEVVALDVG 183
Query: 124 EEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTV 183
E + +R +L V+ FKT HVI SQGYVVYS+++KL+++Y L G +I+KLK SG EIT +
Sbjct: 184 ETYEIRNNLVVRPFKTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGVEITDMM 243
Query: 184 TTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+PEVAFTGDT SDF++D N D LRA+I + E+T++DDS +++ AR +GHTHL EI+
Sbjct: 244 LSPEVAFTGDTTSDFMLDPCNADALRAKIFITEATFLDDSFSIDHARQHGHTHLFEIIAN 303
Query: 244 AEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
A+ N+A+LL HFS R+ +++IR+A + + L+ +V LTEGF
Sbjct: 304 AQWIRNEAVLLTHFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGF 348
>gi|242060950|ref|XP_002451764.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
gi|241931595|gb|EES04740.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
Length = 320
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 163/275 (59%), Positives = 216/275 (78%), Gaps = 8/275 (2%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
++++GY VEG+SIAGHETC++FPSL+LAFDIGRCP A+SQ+FLF+SHAHMDHIGGLP+Y
Sbjct: 41 LEIEGYHVEGISIAGHETCVMFPSLNLAFDIGRCPPLAVSQDFLFVSHAHMDHIGGLPVY 100
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRG RM+PPT+ VP+C+ + V +LF+VHR MD S+L+H LV L+VGEE+ + KDL V
Sbjct: 101 VATRGRRRMRPPTVFVPACLADLVRRLFDVHRAMDQSDLDHKLVPLEVGEEYQLTKDLSV 160
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+ F+TYHV GYV+Y VKQKLK+EY GLPG E+ LK SG EIT +TPE+AF+GDT
Sbjct: 161 RPFRTYHV----GYVIYKVKQKLKEEYAGLPGKELSNLKKSGVEITNVESTPEIAFSGDT 216
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
MSDFI+D N DVL+A+ILV+EST++DDS ++E AR+ GH HLSEIV ++K +NKAILL
Sbjct: 217 MSDFILDPDNADVLKAKILVVESTFIDDSKSIEDARERGHIHLSEIVSLSDKLKNKAILL 276
Query: 255 IHFSARHKVDE----IRRAVDAVPAPLAGRVFALT 285
HFS R+ + +++ + + L R+F +T
Sbjct: 277 NHFSLRYTAEILFSFLKKVISSTLVCLGQRIFIVT 311
>gi|357159012|ref|XP_003578311.1| PREDICTED: ribonuclease Z, chloroplastic-like [Brachypodium
distachyon]
Length = 359
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 154/276 (55%), Positives = 215/276 (77%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+ Q++LFI+HAH+DHIGGLP
Sbjct: 79 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPLFAVRQDYLFITHAHLDHIGGLP 138
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CIK+DVE+L ++HRRM EL LV LD+GE + +R DL
Sbjct: 139 MYIATRGLYNLKPPTVFVPPCIKDDVEELLQIHRRMSRIELEVELVALDLGETYELRNDL 198
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+T+H + SQGYV+YSV++KLK++Y L G +I KLK SG+EIT T+ PEVAFTG
Sbjct: 199 VARPFQTHHTVPSQGYVIYSVRRKLKKQYAHLKGTQIVKLKQSGSEITDTILYPEVAFTG 258
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD V+ AR++GH HLSEI+E+++ F N+ +
Sbjct: 259 DTKSDFILDPRNADALRAKVLITEATFLDDQVDVDHAREHGHMHLSEIMEHSQWFRNETV 318
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + L +V ALTEGF
Sbjct: 319 ILTHFSNRYSLEDIRQAVSRIQPKLLSKVVALTEGF 354
>gi|168005121|ref|XP_001755259.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693387|gb|EDQ79739.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 215/293 (73%), Gaps = 19/293 (6%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+++ G+ +EG+S+ G ETC++ P+L +AFD GRCP R + +++FI+HAHMDHIGGL MY
Sbjct: 62 LEVGGFSIEGVSVGGQETCVMLPALKVAFDSGRCPGRIIDMDYVFITHAHMDHIGGLTMY 121
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
+A+RGL + K PT+IVP CIK VE+L V R +D S L L+G+D+GEEF + K L V
Sbjct: 122 IASRGLKKKKVPTVIVPKCIKATVEKLLAVQRELDESPLPVNLIGMDIGEEFDLGKGLIV 181
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KAFKTYHV+ SQGYV+Y+VKQKLK E++GLPG EIK L+ SG E++ TV EVAFTGDT
Sbjct: 182 KAFKTYHVVPSQGYVIYTVKQKLKAEHVGLPGKEIKALRESGVEVSETVRISEVAFTGDT 241
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE------------ 242
S F +DEAN DVL A++L+MEST++DDST+VE A YGH HL EIV
Sbjct: 242 TSGFFLDEANEDVLHAKLLIMESTFLDDSTSVEDANKYGHMHLFEIVSSTFVIWFSAFIL 301
Query: 243 -------YAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+A+KF+NK IL IHFSAR++ ++I +A++ +PAPL GRV ALTEGF
Sbjct: 302 DCKQVLAHADKFKNKDILFIHFSARYQQEDICKAIENIPAPLQGRVHALTEGF 354
>gi|219362919|ref|NP_001136933.1| nuclear ribonuclease Z [Zea mays]
gi|194697676|gb|ACF82922.1| unknown [Zea mays]
gi|414885986|tpg|DAA62000.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 492
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 208/271 (76%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTEIT T+ PEVAFTG
Sbjct: 197 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 256
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD VE AR++GH HLSEI+E+ + F N+ I
Sbjct: 257 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 316
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFA 283
+L HFS R+ +++IR+AV + L + F+
Sbjct: 317 VLTHFSNRYSLEDIRQAVSRLQPKLNSKTFS 347
>gi|297831528|ref|XP_002883646.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
gi|297329486|gb|EFH59905.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 212/276 (76%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++L+ Y +EG+S+ GHETC+I P L FDIGRCPSRA+ Q FLFI+HAH+DHIGGLP
Sbjct: 73 KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLP 132
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY ++PP I VP IKEDVE+L E+HR M ELN L+ LDVGE + +R D+
Sbjct: 133 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLDVGETYELRNDI 192
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F T+HVI SQGYV+YSV++KL+++Y L G +I+K+K SG EIT T+ +PE+AFTG
Sbjct: 193 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTG 252
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT +++++D N D LR+++L+ E+T++D+S + E A+ GHTH+S+I+E A+ +K +
Sbjct: 253 DTTAEYMLDPRNADALRSKVLITEATFLDESFSTEHAQALGHTHISQIIENAKWIRSKTV 312
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ V+EIR AV + + ++ +V LTEGF
Sbjct: 313 LLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGF 348
>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana]
gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z;
AltName: Full=Zinc phosphodiesterase CPZ; AltName:
Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags:
Precursor
gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana]
gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana]
gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana]
Length = 354
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 211/276 (76%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++L+ Y +EG+S+ GHETC+I P L FDIGRCPSRA+ Q FLFI+HAH+DHIGGLP
Sbjct: 74 KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLP 133
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY ++PP I VP IKEDVE+L E+HR M ELN L+ L VGE + +R D+
Sbjct: 134 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDI 193
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F T+HVI SQGYV+YSV++KL+++Y L G +I+K+K SG EIT T+ +PE+AFTG
Sbjct: 194 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTG 253
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT S++++D N D LRA++L+ E+T++D+S + E A+ GHTH+S+I+E A+ +K +
Sbjct: 254 DTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQIIENAKWIRSKTV 313
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ V+EIR AV + + ++ +V LTEGF
Sbjct: 314 LLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGF 349
>gi|414885985|tpg|DAA61999.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 442
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 203/258 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTEIT T+ PEVAFTG
Sbjct: 197 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 256
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD VE AR++GH HLSEI+E+ + F N+ I
Sbjct: 257 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 316
Query: 253 LLIHFSARHKVDEIRRAV 270
+L HFS R+ +++IR+AV
Sbjct: 317 VLTHFSNRYSLEDIRQAV 334
>gi|414885983|tpg|DAA61997.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 388
Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 158/307 (51%), Positives = 213/307 (69%), Gaps = 31/307 (10%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQ-------------------------------GYVVYSVKQKLKQEY 161
+ F+TYH I SQ GYV+YS+++KLK++Y
Sbjct: 197 VARPFQTYHTIPSQVLLLRASRHLFFVICHDLMPIDIIHPMNGVKGYVIYSIRRKLKKQY 256
Query: 162 LGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVD 221
L G +I KLK SGTEIT T+ PEVAFTGDT SDFI+D N D LRA++L+ E+T++D
Sbjct: 257 AHLKGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLD 316
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRV 281
D VE AR++GH HLSEI+E+ + F N+ I+L HFS R+ +++IR+AV + L +V
Sbjct: 317 DHVDVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSKV 376
Query: 282 FALTEGF 288
ALTEGF
Sbjct: 377 VALTEGF 383
>gi|125581291|gb|EAZ22222.1| hypothetical protein OsJ_05878 [Oryza sativa Japonica Group]
Length = 270
Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 159/274 (58%), Positives = 198/274 (72%), Gaps = 32/274 (11%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+ ++GY VEG+SI G ETC+IFP+L AFDIGRCP RA+SQ FLFISHAH+DHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRGLYR +PPTI +P+C+++ VE+LFE+HR MD SEL+H LV L++G+E +R+DL V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KAFKTYH I SQ IT T+T PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQ--------------------------------ITNTLTVPEIAFTGDT 176
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
M+DFI+D N DVL+A+ILV+EST+VDDS T+E AR+YGHTHL EI+ +K ENKAILL
Sbjct: 177 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILL 236
Query: 255 IHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
IHFSAR+ +EI A++ +P RV AL EGF
Sbjct: 237 IHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 270
>gi|20975607|emb|CAD22099.1| RNase Z [Arabidopsis thaliana]
Length = 354
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 210/276 (76%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++L+ Y +EG+S+ GHETC+I P L FDI RCPSRA+ Q FLFI+HAH+DHIGGLP
Sbjct: 74 KGVELESYAIEGISVGGHETCVIVPELKCVFDIVRCPSRAIQQKFLFITHAHLDHIGGLP 133
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY ++PP I VP IKEDVE+L E+HR M ELN L+ L VGE + +R D+
Sbjct: 134 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDI 193
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F T+HVI SQGYV+YSV++KL+++Y L G +I+++K SG EITY + +PE+AFTG
Sbjct: 194 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGRQIERIKKSGVEITYAILSPEIAFTG 253
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
+T S+++++ N + LRA++L+ E+T++D+S + E A+ GHTH+S+I+E A+ +K +
Sbjct: 254 NTTSEYMLNPRNANALRAKVLISEATFLDESFSTEHAQALGHTHISQIIENAKWIRSKTV 313
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
LL HFS+R+ V+EIR AV + + ++ +V LTEGF
Sbjct: 314 LLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGF 349
>gi|222641796|gb|EEE69928.1| hypothetical protein OsJ_29793 [Oryza sativa Japonica Group]
Length = 357
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 204/276 (73%), Gaps = 8/276 (2%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETC+ PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 85 KGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRGPLFAVSQDYLFITHAHLDHIGGLP 144
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPP + VP CIK+DVE L ++HRRM +L G L
Sbjct: 145 MYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRMSQVDLK--------GRHLKYVMTL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ +H I SQGYV+YSV++KLK++Y L G++I K+K SG EIT T+ PEVAFTG
Sbjct: 197 LPDHLRLHHAIPSQGYVIYSVRRKLKKQYAHLKGNQIMKMKQSGAEITDTILYPEVAFTG 256
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD V+ AR++GH HLSEI+E+++ F NKAI
Sbjct: 257 DTKSDFILDPRNADALRAKVLITEATFLDDQIDVDHAREHGHMHLSEIMEHSQWFRNKAI 316
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + + L+ +V ALTEGF
Sbjct: 317 VLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 352
>gi|4587599|gb|AAD25827.1| hypothetical protein [Arabidopsis thaliana]
Length = 356
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 128/230 (55%), Positives = 179/230 (77%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++L+ Y +EG+S+ GHETC+I P L FDIGRCPSRA+ Q FLFI+HAH+DHIGGLP
Sbjct: 74 KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLP 133
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVA+RGLY ++PP I VP IKEDVE+L E+HR M ELN L+ L VGE + +R D+
Sbjct: 134 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDI 193
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+ F T+HVI SQGYV+YSV++KL+++Y L G +I+K+K SG EIT T+ +PE+AFTG
Sbjct: 194 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTG 253
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE 242
DT S++++D N D LRA++L+ E+T++D+S + E A+ GHTH+S++ +
Sbjct: 254 DTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQVCD 303
>gi|145352107|ref|XP_001420399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580633|gb|ABO98692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 313
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/274 (49%), Positives = 187/274 (68%), Gaps = 1/274 (0%)
Query: 16 QLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYV 75
+L GYK+EG+S+ G ET ++ P+L +AFD GRCP R + + + +SH HMDH+GG MY+
Sbjct: 39 ELAGYKIEGVSVGGRETSVVLPALGVAFDSGRCPQRCVYADVMCLSHTHMDHVGGCGMYI 98
Query: 76 ATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVK 135
ATRGL + PPT+++PS +E E R +D SELNH +G+D GE + M K +
Sbjct: 99 ATRGLLSLTPPTVLLPSARREAFGTFIESLRALDDSELNHRAIGIDPGERYAMNKLFEIA 158
Query: 136 AFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTM 195
AF+T H + SQGYVVY KQKLK Y GL G EIK+L+ G ++T V PEVAFTGDT
Sbjct: 159 AFRTRHPVPSQGYVVYGTKQKLKPAYAGLSGPEIKRLRDDGEQVTDKVEVPEVAFTGDTT 218
Query: 196 SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
D+I D AN D LRA++L+ME T++DD+ + A +GHTH+ +IV A+KF+N+AILLI
Sbjct: 219 GDWIDDPANADALRAKLLIMECTFIDDAVSKHDAERFGHTHIDDIVARADKFQNEAILLI 278
Query: 256 HFSARHKVDEIRRAVDA-VPAPLAGRVFALTEGF 288
HFSAR+K +E+R A+ A +P L + + GF
Sbjct: 279 HFSARYKAEEVRAALKAKLPRALYEKCTPMLVGF 312
>gi|308809015|ref|XP_003081817.1| RNase Z (ISS) [Ostreococcus tauri]
gi|116060284|emb|CAL55620.1| RNase Z (ISS) [Ostreococcus tauri]
Length = 289
Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 191/285 (67%), Gaps = 5/285 (1%)
Query: 9 EKSGRGM----QLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAH 64
E +GRG + GY++EG+S+ G +T +I P L L FD GRCP R++ + + +SH H
Sbjct: 4 EGTGRGRFTEHVVAGYEIEGISVGGQQTSVIVPRLSLCFDSGRCPQRSVYADHMCVSHTH 63
Query: 65 MDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE 124
MDHIGG MYVATRGL ++ PP I++P + + R +D SEL H +G++ GE
Sbjct: 64 MDHIGGCGMYVATRGLLKLSPPKILLPKRRVDAFATFMDAMRALDDSELRHEAIGIEPGE 123
Query: 125 EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVT 184
F M K + FKT H + SQGY+VY KQKLK EY GL G +IKKL+ +G +T V
Sbjct: 124 RFAMSKLFEIAPFKTTHPVPSQGYIVYGTKQKLKSEYAGLDGGDIKKLRENGVIVTDKVE 183
Query: 185 TPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
PEVAFTGDT + +I D AN+D LRA++L+ME T+VDDS + E A +YGHTH+ +++ A
Sbjct: 184 VPEVAFTGDTTAAWIDDPANVDALRAKLLIMECTFVDDSVSKEDAEEYGHTHIDDLISRA 243
Query: 245 EKFENKAILLIHFSARHKVDEIRRAVDA-VPAPLAGRVFALTEGF 288
+KFEN+ ILLIHFSAR+K +E+RRA++A +P L + + G+
Sbjct: 244 DKFENEGILLIHFSARYKAEEVRRALEARLPKKLFDKTTPMLVGY 288
>gi|357494721|ref|XP_003617649.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518984|gb|AET00608.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 412
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 126/173 (72%), Positives = 148/173 (85%)
Query: 7 EEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMD 66
E +K +G+ ++GY+VEGLSI GHETC+IF + +AFDIGRCP RA+S +FL ISHAHMD
Sbjct: 12 ESKKKSKGLNIEGYQVEGLSIGGHETCVIFSNFRVAFDIGRCPPRAVSMDFLLISHAHMD 71
Query: 67 HIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEF 126
HIGGLPMYVATRGLYRMKPPTIIVP +KEDVE+LFE+HR+MD SEL H L+GLDVGEEF
Sbjct: 72 HIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEF 131
Query: 127 CMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEI 179
+R+DL VKAF+TYHVI SQGY++YSVK KLK EY+GL GDEIKKLK SG E
Sbjct: 132 SLRQDLKVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSGDEIKKLKFSGVEF 184
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 97/111 (87%)
Query: 178 EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHL 237
+IT T+ PE+AFTGDTMSDFI+DE N DVLRA++LV+EST+V++ TVE ARDYGHTHL
Sbjct: 302 QITNTLKEPEIAFTGDTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHL 361
Query: 238 SEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
SEI+ YA+K +NKAILLIHFSAR+ V+EI++AV A+P PLAGR FALTEGF
Sbjct: 362 SEIISYADKLQNKAILLIHFSARYTVEEIQQAVSALPPPLAGRTFALTEGF 412
>gi|41017597|sp|P60193.1|RNZN_WHEAT RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase ELAC; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 176
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 126/170 (74%), Positives = 151/170 (88%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
++++GY VEG+SI GHETC+IFP+L LAFDIGRCP RA++Q+FLFISHAH+DHIGGLPMY
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VATRGLYR++PPTI VP ++E VE+LF+VHR MD SELNHTLV LD+GEE+ +R+DL V
Sbjct: 67 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVT 184
+AFKTYH I SQGYV+YSVKQKLKQ+YLGLPG EIK+LK SG EIT TVT
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTVT 176
>gi|357121275|ref|XP_003562346.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like
[Brachypodium distachyon]
Length = 259
Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 127/216 (58%), Positives = 169/216 (78%)
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+YVA R R++PPTI +P+C+ E VE+LFEV+R + SEL H LV L++G+E+ R+DL
Sbjct: 44 VYVAAREFLRLRPPTIFIPACLAEPVERLFEVYRAISRSELKHILVPLELGQEYEFRRDL 103
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+AFKTYHVI SQGYV+Y++ QKLKQE++GLPG EIK+LK SG EIT TV+TPE+AFTG
Sbjct: 104 KVRAFKTYHVIPSQGYVIYTMNQKLKQEFIGLPGTEIKRLKLSGVEITNTVSTPEIAFTG 163
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT S+FI+D N DVL A+ILV+EST++D+S +VE AR+YGHTHL E+ +EK NKAI
Sbjct: 164 DTTSEFILDPNNSDVLXAKILVVESTFLDNSISVEHAREYGHTHLFEVASQSEKLGNKAI 223
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L+HFS R+ +EI A++ + L RV+AL EGF
Sbjct: 224 VLMHFSPRYTSEEIDAAINTLSPALRSRVYALKEGF 259
>gi|413925891|gb|AFW65823.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
gi|413925892|gb|AFW65824.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
Length = 197
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 115/174 (66%), Positives = 147/174 (84%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
A+ + K+ ++++GY V+G+SI G ETC+IFP+L LAFDIGRCP RA+SQ FLF+S
Sbjct: 16 ASASATRPKAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVS 75
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H H+DHIGGLPMYVATRGL+R++PPTI VP+C+++ VE+LFEVHR MD SELNH LV L+
Sbjct: 76 HGHLDHIGGLPMYVATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLE 135
Query: 122 VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175
VGEE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK+LK S
Sbjct: 136 VGEEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|224034447|gb|ACN36299.1| unknown [Zea mays]
Length = 197
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/174 (66%), Positives = 147/174 (84%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
A+ + K+ ++++GY V+G+SI G ETC+IFP+L LAFDIGRCP RA+SQ FLF+S
Sbjct: 16 ASASATRPKAKHRIEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVS 75
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H H+DHIGGLPMYVATRGL+R++PPTI VP+C+++ VE+LFEVHR MD SELNH LV L+
Sbjct: 76 HGHLDHIGGLPMYVATRGLFRLRPPTICVPACLRDLVERLFEVHRAMDQSELNHNLVPLE 135
Query: 122 VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175
VGEE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK+LK S
Sbjct: 136 VGEEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|255073987|ref|XP_002500668.1| predicted protein [Micromonas sp. RCC299]
gi|226515931|gb|ACO61926.1| predicted protein [Micromonas sp. RCC299]
Length = 297
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 183/295 (62%), Gaps = 9/295 (3%)
Query: 3 TKAKEEEKSGRGMQ------LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN 56
T ++ G+G L GYK+EG+S+ G ETCII P L +AFD GRCP R + +
Sbjct: 2 TSTSDDSPVGKGKDRYVVHTLAGYKIEGISVGGQETCIILPQLKIAFDSGRCPQRCVYAD 61
Query: 57 FLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
L +SH H+DH+GG Y+ATR L + PPT+++P+ + E R +D SEL H
Sbjct: 62 TLCLSHTHLDHVGGAGHYIATRSLLSLPPPTVLLPAQRADAFEAYVASLRALDGSELPHV 121
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSG 176
V ++ GE + K V+ F T H + SQGYVVY K+KL++EY GL G EIK L+ +G
Sbjct: 122 AVPIEPGETHVLSKLHCVRPFPTTHPVASQGYVVYGTKRKLREEYAGLSGQEIKALRDAG 181
Query: 177 TEITYTVTTPEVAFTGDTMSDFIVDEANI--DVLRARILVMESTYVDDSTTVEQARDYGH 234
T +T ++ PEVAFTGD ++ + + D LRA++L+ E T+VDD+ VE AR+YGH
Sbjct: 182 TVVTDSIEVPEVAFTGDASGEWTRSDHPVARDALRAKLLICECTFVDDAVDVEGAREYGH 241
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA-VPAPLAGRVFALTEGF 288
TH+ E+ A+ FEN+ ILLIHFSAR+K E+ A++ +PA L R + GF
Sbjct: 242 THIDELAAAADAFENERILLIHFSARYKAGEVTEAIEKRLPAGLRERCVPMLVGF 296
>gi|224035051|gb|ACN36601.1| unknown [Zea mays]
Length = 221
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 160/216 (74%)
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 1 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 60
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTEIT T+ PEVAFTG
Sbjct: 61 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 120
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT SDFI+D N D LRA++L+ E+T++DD VE AR++GH HLSEI+E+ + F N+ I
Sbjct: 121 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 180
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+L HFS R+ +++IR+AV + L +V ALTEGF
Sbjct: 181 VLTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGF 216
>gi|303290104|ref|XP_003064339.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453937|gb|EEH51244.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 180/294 (61%), Gaps = 22/294 (7%)
Query: 17 LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVA 76
L G++VEG+S+ G ETC+I P L +AFD GRCP RA+ + L +SH HMDH+GG Y+A
Sbjct: 1 LAGFRVEGVSVGGQETCVILPQLKIAFDSGRCPQRAVYADTLCLSHTHMDHVGGAGFYIA 60
Query: 77 TRGLYRMKPPTIIVPSCIKEDV---EQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+R L + PP++++P+ + + R +D SEL H LV + GE + K
Sbjct: 61 SRALVSLPPPSVLIPAEARSRAAAFDAFIRSLRELDASELPHHLVPISPGETHVVSKLHV 120
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+ F+T H + SQGYVVY K+KLK E+ G G +IK L+ +G ++T T+ PEVAFTGD
Sbjct: 121 VRPFQTIHPVASQGYVVYGTKEKLKAEHAGKTGAQIKALRDAGAKVTDTIEVPEVAFTGD 180
Query: 194 TMSDFI----------------VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHL 237
T +++I VD D LRA++L+ E T+VDD+ + E ARD+GHTH+
Sbjct: 181 TSAEWIRRATATATEGGEGEGDVDVVARDALRAKLLICECTFVDDAVSPEGARDFGHTHI 240
Query: 238 SEIVEYAE--KFENKAILLIHFSARHKVDEIRRAV-DAVPAPLAGRVFALTEGF 288
E+ A KF+N+A+LLIHFSAR++ EI A+ + P A RV L GF
Sbjct: 241 DELAAAARDGKFQNEAVLLIHFSARYRGREIEDAIAEKFPEEFAKRVTPLLVGF 294
>gi|412990070|emb|CCO20712.1| predicted protein [Bathycoccus prasinos]
Length = 300
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 169/276 (61%), Gaps = 9/276 (3%)
Query: 4 KAKEEEKSGRGM--QLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
K E+K R + L G+ +EGLSI G ET IIFP L L FD GRC R + + + ++
Sbjct: 2 NGKNEQKGNRFVVETLSGFNIEGLSIGGQETSIIFPQLKLCFDSGRCYQRCVYADTMCLT 61
Query: 62 HAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLD 121
H HMDHIGGL MY+A+R L + PPTI+VP E + + R +D S+L H ++
Sbjct: 62 HTHMDHIGGLGMYIASRNLLSLPPPTILVPESKIEAISNFIDALRVLDDSDLPHEMIPFA 121
Query: 122 VGEEFCM---RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE 178
E C K+ +KAF+T H I SQGYV+ S KQKLK EYL L G EIK LK G E
Sbjct: 122 PSAETCYSMKNKNYKIKAFETVHPIASQGYVILSTKQKLKDEYLSLKGSEIKALKDDGVE 181
Query: 179 ITYTVTTPEVAFTGDTMSDFI---VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
IT TV PE+ FTGDT DF+ E + L++R++ +E T+ +D + A+ +GHT
Sbjct: 182 ITDTVDVPEIMFTGDTTMDFLHSSPQEVIQEGLKSRLVCLECTFFNDDVSPADAKRFGHT 241
Query: 236 HLSEIVEYAEKF-ENKAILLIHFSARHKVDEIRRAV 270
H+ +I E A++F E + ILLIHFSAR+ +EIR +
Sbjct: 242 HVRDIAENADRFRECENILLIHFSARYTREEIREGL 277
>gi|414885984|tpg|DAA61998.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 248
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 135/171 (78%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTV 183
+ F+TYH I SQGYV+YS+++KLK++Y L G +I KLK SGTE++ V
Sbjct: 197 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEVSCEV 247
>gi|159489028|ref|XP_001702499.1| nuclear RNase Z [Chlamydomonas reinhardtii]
gi|158280521|gb|EDP06278.1| nuclear RNase Z [Chlamydomonas reinhardtii]
Length = 335
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 171/279 (61%), Gaps = 5/279 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+ + G+++EG+SI+G ET II P + FDIGRCP RA Q + +SH H+DH+GGLP +
Sbjct: 56 LAVSGWELEGISISGQETSIIVPRAKVTFDIGRCPQRACFQQTVLLSHTHLDHVGGLPFH 115
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMRKDLF 133
V TR + ++ P ++VP V +L + + S +++ ++ L+ G++F +
Sbjct: 116 VCTRNMLQLPPSKVVVPQGFSAGVRKLMDAVLELQSSPPIDYEVLELEAGQDFELPSGFL 175
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+ F T H I SQGYV+YS ++KLK E G EIK+L+ SG +++ T PE+AFTGD
Sbjct: 176 CRTFPTTHAIPSQGYVLYSQRKKLKAELQGKSQAEIKELRFSGVDVSETHQVPEIAFTGD 235
Query: 194 TMSDFIVDEANI---DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
T S F+ E N D L+A++L +E T++ + TVE+AR GH H+++ V +A +F+N+
Sbjct: 236 TTSAFLDAETNATLEDALKAKVLCIEMTFISEDVTVEEARGKGHMHITDFVAHAHRFQNE 295
Query: 251 AILLIHFSARHKVDEIRRAVD-AVPAPLAGRVFALTEGF 288
I+LIHFS R+K EI +D +P L + L G
Sbjct: 296 TIVLIHFSPRYKRSEILHQLDIMLPPALRAKCVPLLNGI 334
>gi|413933024|gb|AFW67575.1| hypothetical protein ZEAMMB73_773613 [Zea mays]
Length = 375
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 147/204 (72%), Gaps = 5/204 (2%)
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MYVATRGL+R+ PPTI VP+C+++ VE+LFEVHR MD SELNH LV L+VGEE+ +R+DL
Sbjct: 1 MYVATRGLFRLCPPTIFVPACLRDFVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDL 60
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG EIK+LK SG EIT TV+TPE+AF G
Sbjct: 61 KVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFIG 120
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT +DFI+D N DVL+A+ILV+E ++ + + + H E+ + + N+
Sbjct: 121 DTTADFILDPDNADVLQAKILVVEEQRGGNAASQSHSISF-HRPKKEVSDNNCVYPNE-- 177
Query: 253 LLIHFSARHKVDEIRRAVDAVPAP 276
+H +AR + + V V +P
Sbjct: 178 --VHHTARERTQCLDEKVLKVESP 199
>gi|194699558|gb|ACF83863.1| unknown [Zea mays]
gi|414885982|tpg|DAA61996.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 279
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 135/202 (66%), Gaps = 31/202 (15%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHIGGLP
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHIGGLP 136
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
MY+ATRGLY +KPPT+ VP CI++DVE L +VHRR EL LV LD+GE + +R DL
Sbjct: 137 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 196
Query: 133 FVKAFKTYHVIQSQ-------------------------------GYVVYSVKQKLKQEY 161
+ F+TYH I SQ GYV+YS+++KLK++Y
Sbjct: 197 VARPFQTYHTIPSQVLLLRASRHLFFVICHDLMPIDIIHPMNGVKGYVIYSIRRKLKKQY 256
Query: 162 LGLPGDEIKKLKSSGTEITYTV 183
L G +I KLK SGTE++ V
Sbjct: 257 AHLKGSQIMKLKQSGTEVSCEV 278
>gi|302836959|ref|XP_002950039.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
gi|300264512|gb|EFJ48707.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
Length = 268
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 160/264 (60%), Gaps = 5/264 (1%)
Query: 30 HETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTII 89
ET IIFP + FDIGRCP RA Q + +SHAH+DH+GGLP +V TR + + ++
Sbjct: 4 QETSIIFPRGKVTFDIGRCPQRACFQQTVLLSHAHLDHVGGLPFHVCTREMLSLPASRVV 63
Query: 90 VPSCIKEDVEQLFEVHRRMDHSE-LNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGY 148
VP V +L + R + S L++ ++ L +GE+ + + F T H I SQGY
Sbjct: 64 VPQGFAAGVRKLVDAARELQGSPPLDYQVLELQLGEDHVLPSGYLCRCFPTTHTITSQGY 123
Query: 149 VVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANI--- 205
V+YS ++KLK E G +EI++L+ +G ++T TV PE+AFTGDT + F+
Sbjct: 124 VLYSQRRKLKAELQGKSQEEIRQLRLAGQDVTDTVAVPEIAFTGDTTAGFLDGPGCATLE 183
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
D L+AR+L+ME T++ D TV++ARD GH H+++ V A +F+N+AI+LIHFS R+K +
Sbjct: 184 DALKARVLIMEMTFLCDDVTVDEARDKGHMHIADFVANAHRFQNEAIVLIHFSPRYKRTD 243
Query: 266 IRRAVDA-VPAPLAGRVFALTEGF 288
I ++ +P L + L G
Sbjct: 244 IITTLNTMLPPSLMAKCVPLLNGI 267
>gi|291237107|ref|XP_002738480.1| PREDICTED: TRZ1 (TRNASE Z 1); 3-tRNA processing
endoribonuclease-like [Saccoglossus kowalevskii]
Length = 289
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 169/277 (61%), Gaps = 9/277 (3%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPS--LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
M + +K+ SIAG ETC++ + + +AFDIG +++ + +FISH HMDH+ GL
Sbjct: 1 MDVGNFKIYDWSIAGTETCMVVVTDGMKIAFDIGYSTCQSVGCDHVFISHGHMDHVAGLI 60
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDV----EQLFEVH-RRMDHSELNHTLVGLDVGEEFC 127
+ + R RMKP T VP +K+ + EQL +H + +D+ + + G++
Sbjct: 61 HHASKRSNMRMKPATYYVPCILKQSLLVVAEQLSIMHGKEIDYYKHKAPIEDFKSGQQIK 120
Query: 128 MRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPE 187
+ K F F T H I SQGY+++ V+ KLK EY GLP +EI +K SG E+T PE
Sbjct: 121 LPKSYFATLFPTVHTIPSQGYILWKVRSKLKGEYQGLPSNEIASIKKSGIEVTEQQEYPE 180
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
+AFTGDT + E N VL+ ++L+ME TY+DD T++ +AR+ GH HL+E+VE+AE F
Sbjct: 181 IAFTGDTTFECFQLEGNESVLKVKLLIMECTYLDDETSISEAREKGHLHLNELVEHAELF 240
Query: 248 EN-KAILLIHFSARHKVDEIRRAVDA-VPAPLAGRVF 282
EN ++ILL+HFS ++ +I V + +P L +V+
Sbjct: 241 ENVESILLMHFSLKYSTQQIEELVASKLPETLKNKVY 277
>gi|325107950|ref|YP_004269018.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
gi|324968218|gb|ADY58996.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
Length = 294
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 162/271 (59%), Gaps = 3/271 (1%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
R + G +EG S A +T P L L FD+G P + F+SHAH+DH+ LP
Sbjct: 23 RSVSHAGLTIEGYSRAAVQTYWRIPELKLGFDLGGSPWSFMGTPRFFLSHAHLDHMAALP 82
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+VA R + +M+PP+I VP+ +K DVE+L +++D + L G++ G+E + ++
Sbjct: 83 AFVARRRMMKMEPPSIWVPAQVKSDVERLLRAWQKLDRGRMVCDLQGVEPGDEIELSREH 142
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
+T H + S GY++Y ++KLK E+ GLPG++I+ L+ +G ++T+ V P VA+ G
Sbjct: 143 IALVTETKHTVPSVGYIIYDRRRKLKAEFQGLPGEKIRDLRLAGEDVTHEVRVPIVAYLG 202
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT + +A+ DV RA+IL+ E T+ ++ +GHTHL +I+E A++FEN+ I
Sbjct: 203 DTSPPGL--DAHPDVYRAKILITEMTFFRPEHRKQKIHKFGHTHLDDILERADRFENELI 260
Query: 253 LLIHFSARHKVDEIRRAVDA-VPAPLAGRVF 282
LL HFS R+ + ++RAV +P L R+
Sbjct: 261 LLAHFSTRYHIAHLKRAVKKRLPDSLKDRII 291
>gi|183220740|ref|YP_001838736.1| putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910841|ref|YP_001962396.1| metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775517|gb|ABZ93818.1| Metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779162|gb|ABZ97460.1| Putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 279
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 160/269 (59%), Gaps = 3/269 (1%)
Query: 14 GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPM 73
+ +G K EG+S G T II PSLD FD G + + +SHAH+DH G+P
Sbjct: 5 SFEYKGTKFEGISEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
YV+ R L ++ P I VP ++ + Q+ +++ ++ + + L+GL+ GE ++ F
Sbjct: 65 YVSQRSLRKLPKPKIYVPKALEPKLSQILKLYSEIEDFDYDCDLIGLEYGERVELKPGYF 124
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
K ++H + SQGY VY K+KLK+E+ + DEI+K K +G + T V P V+F+GD
Sbjct: 125 FKPLPSFHRVPSQGYTVYETKRKLKKEFSSMSSDEIRKSKENGLDPTEEVAAPFVSFSGD 184
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
+ ++I++ N DV +++IL ME TY + V +AR++GHTH EI+E+A FEN+AI+
Sbjct: 185 SKIEYILE--NEDVRKSKILFMECTYYCEKRDVSRAREWGHTHFDEIIEHASSFENEAIV 242
Query: 254 LIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
LIH S R+ E+ + VP+ L R+
Sbjct: 243 LIHPSKRYSYRELNDLLRKKVPSVLKDRI 271
>gi|430743488|ref|YP_007202617.1| beta-lactamase superfamily metal-dependent hydrolase
[Singulisphaera acidiphila DSM 18658]
gi|430015208|gb|AGA26922.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Singulisphaera acidiphila DSM 18658]
Length = 293
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 157/270 (58%), Gaps = 3/270 (1%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
R + +G VEG S A +T P L L FD+G P +S F+SH H+DHI LP
Sbjct: 22 RSLIHKGLTVEGYSRAAVQTYWRIPELKLGFDLGAQPWSFMSTPTWFLSHTHLDHIAALP 81
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+YVA R + +M+PPTI +P+ E VE L +++D L LVG+ G+E + ++L
Sbjct: 82 VYVARRRMMKMEPPTIYLPAEAIEAVEMLLRAFQKLDRGRLPAKLVGVVPGQEIELSREL 141
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
VK F T H I + GY+VY ++KLK EY L G+EI+ ++ SG E++ + P+VA+ G
Sbjct: 142 VVKTFATKHTIPAIGYLVYERRRKLKPEYHDLSGEEIRDIRLSGVEVSTEIRMPKVAYLG 201
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT + + D+ A I+++E T+V YGHTHL +I+ A++FEN+ I
Sbjct: 202 DTAPAGL--DGLPDLYHAEIIILEMTFVAPGDRPSLIHKYGHTHLDDIIARADRFENEVI 259
Query: 253 LLIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
+ HFS R D+I+R VD +P L GR+
Sbjct: 260 IASHFSTRLHPDQIQRIVDKRLPDNLRGRL 289
>gi|168701937|ref|ZP_02734214.1| hypothetical protein GobsU_20593 [Gemmata obscuriglobus UQM 2246]
Length = 284
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 156/264 (59%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A ++ P L + FD+G P + F+SH H+DH+ LP+YVA R
Sbjct: 19 GLTIEGWSRAAVQSYWRIPELKIGFDLGAQPWDFMGTPNWFVSHTHLDHVAALPVYVARR 78
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PPT+ VP+ EDV++L V R+D L GL G+E + ++ V F
Sbjct: 79 RMMKMDPPTVYVPAEGLEDVKKLMAVMHRLDRGRQLAHLKGLTAGDEIELTREHVVTVFN 138
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
T H I S+G+VV+ + KLK EY+GLPGD+IK+LK +GT IT V P VA+TGDT
Sbjct: 139 TVHTIPSRGFVVWERRNKLKDEYIGLPGDKIKELKLAGTAITREVRIPIVAYTGDTAPAG 198
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ +A A+IL+ E ++V + ++ +GH HL + VE A++F+N+ I+ HFS
Sbjct: 199 L--DACPACFDAKILITEMSFVRAAHRRDKIHKFGHMHLDDFVERAQRFKNELIIAGHFS 256
Query: 259 ARHKVDEIRRAVD-AVPAPLAGRV 281
R+ +E+R+ +D +PA L R+
Sbjct: 257 TRYHPNEVRKLLDNKLPADLKARM 280
>gi|406830995|ref|ZP_11090589.1| hypothetical protein SpalD1_05142 [Schlesneria paludicola DSM
18645]
Length = 279
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 162/268 (60%), Gaps = 3/268 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+Q G +EG S A ++ P L L FD+G P ++ +FI+HAH+DH+ LP+Y
Sbjct: 10 LQHDGLTIEGYSRAAVQSYWRIPELKLGFDLGGSPWDFMNVPTIFITHAHLDHMAALPVY 69
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VA R + +M+PPTI +P E ++L +V +R+D + LVG+ G+E + +D V
Sbjct: 70 VARRRMMKMEPPTIYLPEENVEWADRLLKVWQRLDRGRMVCQLVGVKPGQEIELSRDHVV 129
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
F+T H + S GY+V+ ++KLK +Y + G+EI+ L+ SG ++T+ V TP V +TGDT
Sbjct: 130 TTFETRHTVPSVGYLVWQRRKKLKLQYQSMSGNEIRDLRKSGVDVTHEVRTPLVCYTGDT 189
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ + + A+IL+ E T+ E+ +GHTHL +I+E A++F+N+ I++
Sbjct: 190 APPGLDNYPAL--YEAKILITEMTFFRPDHRKEKIYKFGHTHLDDIIERADRFKNELIII 247
Query: 255 IHFSARHKVDEIRRAV-DAVPAPLAGRV 281
+HFS R+ ++I RAV +PA L RV
Sbjct: 248 MHFSTRYATNQIERAVMKRLPAQLRDRV 275
>gi|408794095|ref|ZP_11205700.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408461330|gb|EKJ85060.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 279
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 157/269 (58%), Gaps = 3/269 (1%)
Query: 14 GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPM 73
+ +G K EGLS G T II PSLD FD G + + +SHAH+DH G+P
Sbjct: 5 SFEYKGIKFEGLSEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
YV+ R L ++ P I +P ++ + Q+ +++ ++ + L+GLD G+ ++ F
Sbjct: 65 YVSQRSLRKLPIPKIYLPKSLEPKMSQILKLYSEIEDFDYECELIGLDFGDRVELKPGYF 124
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
K ++++H + SQGY VY K+KLK+E+ L +EI+ K G + T ++ P V+F+GD
Sbjct: 125 FKPWQSFHRVPSQGYTVYETKRKLKKEWTSLSSEEIRNKKDLGEDPTEEISIPLVSFSGD 184
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T +++++ N DV +++IL ME TY + V +AR++GHTH EIV A FEN+AI+
Sbjct: 185 TKIEYVLE--NEDVRKSKILFMECTYYCEKRDVNRAREWGHTHFDEIVANASSFENEAIV 242
Query: 254 LIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
LIH S R+ E+ V +P L RV
Sbjct: 243 LIHPSKRYSYRELNELVRKKIPPILKDRV 271
>gi|320102325|ref|YP_004177916.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
gi|319749607|gb|ADV61367.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
Length = 293
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 3/265 (1%)
Query: 18 QGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
G +EG S A +T P L + FD+G P ++ F+SH H+DHI LP+YV+
Sbjct: 27 NGLTIEGYSRAAVQTYWRVPELKVGFDLGVQPWSFMTTPTYFVSHTHLDHIAALPVYVSR 86
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
R L +M+PPTI +PS E V+ L RR+D L ++G++ ++ + ++L V+
Sbjct: 87 RRLMKMEPPTIYLPSEGVEPVQALLRAMRRLDRGALPAAIIGVEPHQDIELSRELVVRTL 146
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
T H I S G++VY ++KLK EY L GD+I+ L+ SG E++ + P+V + GDT +
Sbjct: 147 PTQHTIPSLGFLVYERRKKLKPEYHDLTGDQIRDLRLSGVEVSAEIRIPKVCYLGDTTPE 206
Query: 198 FIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHF 257
I + + D+L+A IL++E T+V +GHTHL +I+ A+ FEN+ I+ HF
Sbjct: 207 GI--DCHPDILKAEILILEMTFVTAQERPALIHKFGHTHLDDILARADAFENQIIIASHF 264
Query: 258 SARHKVDEIRRAVD-AVPAPLAGRV 281
S R ++I RAV+ +P L GR+
Sbjct: 265 STRQPANQIHRAVERKLPNSLRGRL 289
>gi|296123238|ref|YP_003631016.1| hypothetical protein Plim_2995 [Planctomyces limnophilus DSM 3776]
gi|296015578|gb|ADG68817.1| Nuz [Planctomyces limnophilus DSM 3776]
Length = 279
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 155/268 (57%), Gaps = 3/268 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
M + +EG S A ++ P L + FD+G P + FI+HAH+DH+ LP Y
Sbjct: 10 MPYKDITIEGWSRAAVQSYWRIPELKIGFDLGGSPWDFIGIPTFFITHAHLDHMAALPAY 69
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VA R + +++PPT+ VP + EDVE++ +++D + L+G+ EF + ++ V
Sbjct: 70 VARRRMMKLEPPTVYVPEAVVEDVERMLRAWQKLDRGRMLVNLIGVGENSEFELGREWVV 129
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+F T H + S GYVV++ + KLK EY GL GDEI+ L+ +G E+T V TP +A+TGDT
Sbjct: 130 TSFPTKHTVPSVGYVVWNRRMKLKPEYHGLSGDEIRDLRLAGNEVTAEVRTPWIAYTGDT 189
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ +A + +A++L+ E T+ E+ +GH HL + VE ++F+N+ I+
Sbjct: 190 APAGL--DACEAIYQAKVLITEMTFFRPEHRREKVHKFGHLHLDDFVERKDRFQNEVIIA 247
Query: 255 IHFSARHKVDEIRRAV-DAVPAPLAGRV 281
+HFS R+ I +AV +PA L ++
Sbjct: 248 MHFSTRYPTPTIEKAVMKRLPAELKSKI 275
>gi|359686865|ref|ZP_09256866.1| hypothetical protein LlicsVM_00735 [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750724|ref|ZP_13307010.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
gi|418757046|ref|ZP_13313234.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384116717|gb|EIE02974.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273327|gb|EJZ40647.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
Length = 276
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 156/267 (58%), Gaps = 2/267 (0%)
Query: 18 QGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
+GY EG+S G T ++ P L L FDIG ++ L ++HAH+DH GLP Y++
Sbjct: 8 RGYLFEGISEGGIRTSVVMPRLSLMFDIGHQNPNRINIERLLLTHAHLDHSAGLPYYISQ 67
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
R L ++ PP I +P ++ + ++ ++ +++ + + GLD GEE + F K +
Sbjct: 68 RSLRKLGPPKIYLPKTLEAPMREILSLYSKIEDFPYLYEMKGLDEGEEIEIDAYHFFKIW 127
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
KT+H + SQGY +Y K+KL+ E+ GL +E+ K K G +I + P V+F+GDT +
Sbjct: 128 KTFHRVDSQGYTIYERKKKLRSEFAGLDRNELLKKKEEGIDINEVHSKPLVSFSGDTKIE 187
Query: 198 FIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHF 257
+++ A+ DV + IL +E TY+D ++E AR++GH HL EI+ + F+N+ I+LIHF
Sbjct: 188 YVL--AHKDVAESEILFLECTYIDHERSIEDAREWGHIHLDEILHHISSFKNEKIVLIHF 245
Query: 258 SARHKVDEIRRAVDAVPAPLAGRVFAL 284
S R+ IR+ + +P F L
Sbjct: 246 SKRYPPSYIRKILHKRISPSERDRFHL 272
>gi|42523833|ref|NP_969213.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
gi|39576040|emb|CAE80206.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
Length = 280
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 158/273 (57%), Gaps = 3/273 (1%)
Query: 10 KSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIG 69
++G YK G+S++G T I P L L+FD+ + ++ FISH H+DH
Sbjct: 4 QAGESWSYNKYKFHGMSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAA 63
Query: 70 GLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR 129
G+P ++ R + + P +P + E ++++ ++ ++++ + + V + +E +
Sbjct: 64 GIPYIISQRAMNSLPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFVPVKADDEIPLN 123
Query: 130 KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA 189
F+K F T H I+S GY ++ V +KLK+EYLGL DEI L+ G E+ T P V+
Sbjct: 124 PQAFIKVFPTTHRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVS 183
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
FTGDT +F+ ++ V +++IL+MESTY+DD +VE AR +GHTH+ EI+ + E+
Sbjct: 184 FTGDTQIEFL--DSRPWVRQSKILIMESTYLDDKKSVEHARTWGHTHIDEIIPRLKDIES 241
Query: 250 KAILLIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
+ I++IH S+R+ E R + + +PA RV
Sbjct: 242 EKIVIIHASSRYSDKEALRLLQEKIPAEYRDRV 274
>gi|426404322|ref|YP_007023293.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860990|gb|AFY02026.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 280
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 158/273 (57%), Gaps = 3/273 (1%)
Query: 10 KSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIG 69
++G YK GLS++G T I P L L+FD+ + ++ FISH H+DH
Sbjct: 4 QAGESWSYNKYKFHGLSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAA 63
Query: 70 GLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR 129
G+P ++ + + M P +P + E ++++ ++ ++++ + + + + +E +
Sbjct: 64 GIPYIISQKAMNSMPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFIPVKADDEIPLN 123
Query: 130 KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA 189
F+K F T H I+S GY ++ V +KLK+EYLGL DEI L+ G E+ T P V+
Sbjct: 124 PQAFIKVFPTTHRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVS 183
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
FTGDT +F+ ++ V ++++L+MESTY+DD +VE AR +GHTH+ EI+ + E+
Sbjct: 184 FTGDTQIEFL--DSRPWVRQSKVLIMESTYLDDKKSVEHARTWGHTHIDEIIPRLKDIES 241
Query: 250 KAILLIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
+ I++IH S+R+ E R + + +PA RV
Sbjct: 242 EKIVIIHASSRYSDKEALRLLQEKIPAEYRDRV 274
>gi|392403499|ref|YP_006440111.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
gi|390611453|gb|AFM12605.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
Length = 277
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 139/241 (57%), Gaps = 2/241 (0%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
V + G ETC I P+ LAFD GRCP + +F++H H+DH GLP Y++ R L
Sbjct: 11 VNAIGRGGIETCYILPAFQLAFDTGRCPDGLIDMPRVFLTHGHLDHSAGLPYYISQRSLR 70
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYH 141
+ PP I P+ I + ++ + ++++ E L GL G+E +RKDL+V+A + H
Sbjct: 71 HLPPPEIYCPAEIVAPLREILHLWQKIEGFEYPVALKGLSPGDEIPVRKDLYVRALASSH 130
Query: 142 VIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVD 201
+ +GY + +KLK EYL + G EIK++K G I P AF+GDT +F+ D
Sbjct: 131 RVPCRGYALVRKTRKLKDEYLTVNGREIKRMKDRGEAIFEDRDIPIFAFSGDTTIEFLQD 190
Query: 202 EANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
N A +L +E TY+DD V +AR++GH HL EI+ +A F+N+ I+L HFS R+
Sbjct: 191 --NQAAREATVLFIECTYIDDKRPVARAREWGHIHLDEIIAHAHLFKNEKIVLTHFSKRY 248
Query: 262 K 262
Sbjct: 249 N 249
>gi|410942651|ref|ZP_11374426.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
gi|410782289|gb|EKR71305.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
Length = 275
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 156/258 (60%), Gaps = 4/258 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSCGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++KPP I VP+ +KE ++++ +++ +++ + L + G++ + + F
Sbjct: 64 YISQRSLRKLKPPKIFVPAPLKEPMQKILDLYSEIENFTYAYELYAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+T+H + SQGY +Y ++KLK+E+ L DE+ + E++ P ++F+GD
Sbjct: 124 FSPHQTFHRVPSQGYTLYQKRKKLKKEFQSLSQDELNQALKEKREVSELSEIPVISFSGD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T +++++ DV + IL +E TY+D+ V QAR++GHTHL EI+ F+N+ I+
Sbjct: 184 TKIEYVLEHE--DVANSSILFIECTYIDEERNVAQAREWGHTHLDEILGNLSAFKNEKIV 241
Query: 254 LIHFSARHKVDEIRRAVD 271
LIHFS R+ + IR +D
Sbjct: 242 LIHFSKRYSISYIREVLD 259
>gi|418697308|ref|ZP_13258301.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|421109211|ref|ZP_15569735.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
gi|409954810|gb|EKO13758.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|410005731|gb|EKO59518.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
Length = 275
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 157/258 (60%), Gaps = 4/258 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSSGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++KPP I VP+ +++ + ++ +++ +++ ++ L + G++ + + F
Sbjct: 64 YISQRSLRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYSYELSAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+T+H + SQGY +Y ++KLK+E+ + +E+ + E++ P ++F+GD
Sbjct: 124 FSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T +++++ DV + IL +E TY+DD V QAR++GHTHL EI++ F+N+ I+
Sbjct: 184 TKIEYVLEHE--DVANSSILFIECTYIDDERNVAQAREWGHTHLDEILDNLSSFKNEKIV 241
Query: 254 LIHFSARHKVDEIRRAVD 271
LIHFS R+ V IR +D
Sbjct: 242 LIHFSKRYSVSYIREVLD 259
>gi|359728213|ref|ZP_09266909.1| metallo-beta-lactamase [Leptospira weilii str. 2006001855]
Length = 275
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 150/257 (58%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I VP+ ++E + ++ +++ ++ ++ + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ LP +E+ + E++ TP V+F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSNILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ + IR +D
Sbjct: 243 IHFSKRYSISYIREVLD 259
>gi|417779881|ref|ZP_12427658.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
gi|410780183|gb|EKR64785.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
Length = 275
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 150/257 (58%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I VP+ ++E + ++ +++ ++ ++ + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ LP +E+ + E++ TP V+F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSNILFIECTYIDKERNVAQAREWGHIHLDEILGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ + IR +D
Sbjct: 243 IHFSKRYSISYIREVLD 259
>gi|398339983|ref|ZP_10524686.1| metallo-beta-lactamase [Leptospira kirschneri serovar Bim str.
1051]
gi|418677210|ref|ZP_13238486.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686998|ref|ZP_13248161.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|421130521|ref|ZP_15590715.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|400322158|gb|EJO70016.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410358220|gb|EKP05401.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|410738394|gb|EKQ83129.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
Length = 275
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 156/258 (60%), Gaps = 4/258 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSSGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++KPP I VP+ +++ + ++ +++ +++ + L + G++ + + F
Sbjct: 64 YISQRSLRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+T+H + SQGY +Y ++KLK+E+ + +E+ + E++ P ++F+GD
Sbjct: 124 FSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T +++++ DV + IL +E TY+DD V QAR++GHTHL EI++ F+N+ I+
Sbjct: 184 TKIEYVLEHE--DVANSSILFIECTYIDDERNVAQAREWGHTHLDEILDNLSSFKNEKIV 241
Query: 254 LIHFSARHKVDEIRRAVD 271
LIHFS R+ V IR +D
Sbjct: 242 LIHFSKRYSVSYIREVLD 259
>gi|456864030|gb|EMF82459.1| beta-lactamase family protein [Leptospira weilii serovar Topaz str.
LT2116]
Length = 275
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 150/257 (58%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I VP+ ++E + ++ +++ ++ ++ + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ LP +E+ + E++ TP V+F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSSILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ + IR +D
Sbjct: 243 IHFSKRYSISYIREVLD 259
>gi|24216098|ref|NP_713579.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45656664|ref|YP_000750.1| hypothetical protein LIC10770 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386075158|ref|YP_005989478.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|417758987|ref|ZP_12407026.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|417767389|ref|ZP_12415330.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417769184|ref|ZP_12417103.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417775147|ref|ZP_12423006.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|417786493|ref|ZP_12434183.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|418666847|ref|ZP_13228266.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418674574|ref|ZP_13235874.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|418681574|ref|ZP_13242800.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418693070|ref|ZP_13254135.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|418699160|ref|ZP_13260126.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418707060|ref|ZP_13267896.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418711705|ref|ZP_13272460.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418714788|ref|ZP_13275280.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|418723543|ref|ZP_13282382.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|418730253|ref|ZP_13288754.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|421084350|ref|ZP_15545211.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|421101177|ref|ZP_15561791.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117220|ref|ZP_15577588.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421122253|ref|ZP_15582537.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|421127386|ref|ZP_15587610.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136526|ref|ZP_15596631.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|24197338|gb|AAN50597.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45599900|gb|AAS69387.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458950|gb|AER03495.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|400326724|gb|EJO78987.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400350127|gb|EJP02405.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400357026|gb|EJP13180.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|409945087|gb|EKN90665.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|409948927|gb|EKN98912.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409950115|gb|EKO04644.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|409963243|gb|EKO26972.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|410011244|gb|EKO69367.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410019414|gb|EKO86234.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410344805|gb|EKO95962.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|410368973|gb|EKP24347.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433098|gb|EKP77448.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|410435476|gb|EKP84608.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575068|gb|EKQ38091.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|410578357|gb|EKQ46218.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|410757628|gb|EKR19239.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410761742|gb|EKR27914.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410763266|gb|EKR33997.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410767948|gb|EKR43206.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774930|gb|EKR54933.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|410788962|gb|EKR82667.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|455669334|gb|EMF34465.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|456822819|gb|EMF71289.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 275
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 155/258 (60%), Gaps = 4/258 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSCGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++K P I VP+ +KE ++++ +++ +++ + L + G++ + + F
Sbjct: 64 YISQRSLRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+T+H + SQGY +Y ++KLK+E+ + +E+ + E++ P ++F+GD
Sbjct: 124 FSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T +++++ DV + IL +E TY+D+ V QAR++GHTHL EI+ F+N+ I+
Sbjct: 184 TKIEYVLEHE--DVANSSILFIECTYIDNERNVAQAREWGHTHLDEILNNLSSFKNEKIV 241
Query: 254 LIHFSARHKVDEIRRAVD 271
LIHFS R+ V IR +D
Sbjct: 242 LIHFSKRYSVSYIREVLD 259
>gi|356498042|ref|XP_003517863.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like,
partial [Glycine max]
Length = 205
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 129/206 (62%), Gaps = 44/206 (21%)
Query: 69 GGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCM 128
GGLPMYVA GLYRM+PPT IVP +KEDVE+LFE+HR+M EL H L+GLDVG EF +
Sbjct: 2 GGLPMYVAMLGLYRMEPPTNIVPILVKEDVEKLFEIHRKMYQLELKHNLIGLDVGXEFHL 61
Query: 129 RKDLFVKAFKTYHVIQSQ--------GYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEIT 180
KDL VKAF+T HVI + GY++YS KQKLKQEY+GL G+EIK LKS G E
Sbjct: 62 IKDLKVKAFRTCHVIPTXPGSQPTQCGYILYSEKQKLKQEYIGLSGNEIKNLKSFGME-- 119
Query: 181 YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG-HTHLSE 239
++I++L ++S TVE ARDYG H +LS
Sbjct: 120 --------------------RASHINLL------------NNSITVEHARDYGIHVNLSG 147
Query: 240 IVE-YAEKFENKAILLIHFSARHKVD 264
+ Y E+ +N+AILLIHFSAR+ V+
Sbjct: 148 FINLYVERLQNRAILLIHFSARYTVE 173
>gi|359684873|ref|ZP_09254874.1| metallo-beta-lactamase [Leptospira santarosai str. 2000030832]
gi|410451159|ref|ZP_11305177.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|418745247|ref|ZP_13301587.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|418753711|ref|ZP_13309953.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|421111542|ref|ZP_15572018.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|422002686|ref|ZP_16349922.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409965982|gb|EKO33837.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|410014936|gb|EKO77050.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|410793709|gb|EKR91624.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|410803152|gb|EKS09294.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|417258777|gb|EKT88163.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873492|gb|EMF88867.1| beta-lactamase family protein [Leptospira santarosai str. ST188]
Length = 275
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRVHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I VP ++E + ++ +++ ++ ++ + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFVPVALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ L +E+ G E++ P V+F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLALKQGKEVSELSEIPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+E F N+ I+L
Sbjct: 185 KIEYVLEHE--DVANSSILFIECTYIDQERNVAQAREWGHIHLDEILENLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ V IR +D
Sbjct: 243 IHFSKRYSVSYIREVLD 259
>gi|421097854|ref|ZP_15558533.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
gi|410799137|gb|EKS01218.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
Length = 275
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 147/257 (57%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I VP+ ++E + ++ +++ ++ + + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYLYDMKAANPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ LP +E+ E++ P ++F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLALKQKKEVSEPSEFPVISFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSSILFIECTYIDKERNVTQAREWGHIHLDEIIGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ + IR +D
Sbjct: 243 IHFSKRYSISYIREVLD 259
>gi|398331089|ref|ZP_10515794.1| metallo-beta-lactamase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 275
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 148/257 (57%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I +P+ ++E + ++ +++ ++ + + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFLPATLEEPMRRILDLYSEIEDFSYLYDMKAVSPGDKIDLDQQHFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
KT+H + SQGY +Y ++KLK+E+ L +E+ + E++ TP V+F+GDT
Sbjct: 125 SPHKTFHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLVLKQKKEVSELSETPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSSILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ V IR +D
Sbjct: 243 IHFSKRYSVSYIREVLD 259
>gi|149177337|ref|ZP_01855942.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
gi|148843862|gb|EDL58220.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
Length = 279
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 149/262 (56%), Gaps = 10/262 (3%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+ ++ +G+ +EG S A ++ P L L FD+G P + FI+HAH+DH+ LP
Sbjct: 8 QSVKYKGFTIEGYSRAAVQSYWRIPELKLGFDLGGSPWSFMGTAVFFITHAHLDHMAALP 67
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+VA R + +M PPTI +P + + V ++ + +++D + L+GL GEE + ++
Sbjct: 68 AFVARRRMMKMSPPTIYLPEEVVDPVWKMLKSWQKLDRGRMECELIGLKDGEEIQLSREH 127
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V AF+T H + S G+ V+ ++KLK E+ G P +I+ + SG E++ + P V +TG
Sbjct: 128 AVTAFQTKHTVPSLGFQVWDCRKKLKPEFQGKPETDIRDARISGIEVSEEIRVPLVCYTG 187
Query: 193 DTMSDFIVDEANID----VLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
DT A +D +++L+ E T+ E+ +GH HL +IVE AE+F+
Sbjct: 188 DTAP------AGLDHFETAYESKVLITEMTFYRPEHRREKIHKFGHMHLDDIVERAERFQ 241
Query: 249 NKAILLIHFSARHKVDEIRRAV 270
N+ I+L HFS R+ ++++ AV
Sbjct: 242 NELIILAHFSTRYHDNQVQNAV 263
>gi|116327500|ref|YP_797220.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331886|ref|YP_801604.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418721682|ref|ZP_13280857.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|418735728|ref|ZP_13292135.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421092503|ref|ZP_15553243.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|116120244|gb|ABJ78287.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125575|gb|ABJ76846.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410364730|gb|EKP15743.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|410741843|gb|EKQ90595.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|410748585|gb|EKR01482.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887690|gb|EMF98717.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200701203]
Length = 275
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 147/257 (57%), Gaps = 2/257 (0%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
Q + Y+ EG+S G T + PSL L FDIG + + L ++H+H+DH LP Y
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYY 64
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
++ R L ++KPP I +P+ ++E + ++ +++ ++ ++ + + G++ + + F
Sbjct: 65 ISQRSLRKLKPPKIFLPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKVDLDQQYFF 124
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+T+H + SQGY +Y ++KLK+E+ L +E+ E++ P V+F+GDT
Sbjct: 125 SPHRTFHRVPSQGYTLYQRRKKLKKEFQSLSQEELNFALKQKKEVSEPSEIPVVSFSGDT 184
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+++++ DV + IL +E TY+D V QAR++GH HL EI+ F N+ I+L
Sbjct: 185 KIEYVLEHE--DVASSNILFIECTYIDKERNVTQAREWGHIHLDEIIGNLSSFRNEKIVL 242
Query: 255 IHFSARHKVDEIRRAVD 271
IHFS R+ + IR +D
Sbjct: 243 IHFSKRYSISYIREVLD 259
>gi|398342621|ref|ZP_10527324.1| metallo-beta-lactamase [Leptospira inadai serovar Lyme str. 10]
Length = 276
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 3/257 (1%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y EG+S G T II +L+L FDIG + L ++HAH+DH G+P YV+ R
Sbjct: 10 YSYEGISEGGIRTSIIMSNLNLMFDIGHQNPNKIHIGKLLLTHAHLDHSAGIPYYVSQRS 69
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT 139
L ++ PP I VP ++ + ++ ++ +++ + L G+ GEE + K ++T
Sbjct: 70 LRKLTPPKIYVPKELEIPLHEILALYSKIEDFPYRYELFGVAEGEEVEIDPYHTFKPWRT 129
Query: 140 YHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFI 199
+H + SQGY VY K+KLK E+ GL E+ + K I ++ P V+F+GDT +++
Sbjct: 130 FHRVVSQGYTVYERKKKLKTEFQGLSAAELAERKKVSGPIDEIISKPVVSFSGDTKIEYV 189
Query: 200 VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259
+ + DV + ++ +E TY+D+ V +AR++GH HL EI+ F+N+ I+LIHFS
Sbjct: 190 L--THKDVAESEVVFLECTYIDEERDVSKAREWGHIHLDEILHNLSAFKNEKIVLIHFSK 247
Query: 260 RHKVDEIRRAV-DAVPA 275
R+ + I++ + +PA
Sbjct: 248 RYPIPYIKKVIAKKIPA 264
>gi|421614182|ref|ZP_16055247.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
gi|408495048|gb|EKJ99641.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
Length = 279
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 145/264 (54%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A +TC L L FD+G P + +FISHAH+DHI LP YV+ R
Sbjct: 14 GLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSRR 73
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PP I +P + ++ + R +D + LVGL G+E + ++ VK+
Sbjct: 74 RMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSMN 133
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
+H I + G++VY + KLK EYL LPG++I+ LK +GTEIT P A+TGDT
Sbjct: 134 VHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPKG 193
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ ++N + ++IL+ E T+ + +GH H+ + E A+ F+N+ I+ H S
Sbjct: 194 L--DSNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHAS 251
Query: 259 ARHKVDEIRRAV-DAVPAPLAGRV 281
R+ +IRR V A+P L R+
Sbjct: 252 TRYTDVQIRRFVKKALPGMLNDRL 275
>gi|348676071|gb|EGZ15889.1| hypothetical protein PHYSODRAFT_316061 [Phytophthora sojae]
Length = 283
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 141/258 (54%), Gaps = 6/258 (2%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
GY++ +AG E+C ++D+AFD+G R +S++ +FI+H H+DHIG L + A R
Sbjct: 10 GYRLHLRCVAGIESCCYVDAVDVAFDLGYLVDRVVSKSHVFITHGHVDHIGALVAHAARR 69
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSE-LNHTLVGLDVGEEFCMRKDLFVKAF 137
L + KP VP+ + +E + + M E LV L +E + V+A
Sbjct: 70 ALQKQKPAQYFVPAHLVPHLESILQSTAAMQGDEPFPAQLVPLQAYDEVHVSPKYMVRAV 129
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
T H + S GY+++ + +LK EY LPG EI LK SG IT TPE+A+TGDT +
Sbjct: 130 PTTHRVPSLGYILFEKRNRLKSEYRELPGPEIAALKRSGQTITSAELTPEIAYTGDTTIE 189
Query: 198 FIV----DEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
DE D+LR ++L+ E+TY D TV+ A GH HL ++ E+ F+ L
Sbjct: 190 AFTAASDDERMRDLLRVKVLITEATYADGKMTVQDAVARGHMHLDQLAEHEHLFQRVGTL 249
Query: 254 -LIHFSARHKVDEIRRAV 270
L+HFSAR+ D++ V
Sbjct: 250 VLVHFSARYSADDLAECV 267
>gi|417304309|ref|ZP_12091337.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
gi|327539420|gb|EGF26036.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
Length = 279
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 145/264 (54%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A +TC L L FD+G P + +FISHAH+DHI LP YV+ R
Sbjct: 14 GLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSRR 73
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PP I +P + ++ + R +D + LVGL G+E + ++ VK+
Sbjct: 74 RMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSMN 133
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
+H I + G++VY + KLK EYL LPG++I+ LK +GTEIT P A+TGDT
Sbjct: 134 VHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPKG 193
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ ++N + ++IL+ E T+ + +GH H+ + E A+ F+N+ I+ H S
Sbjct: 194 L--DSNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHAS 251
Query: 259 ARHKVDEIRRAV-DAVPAPLAGRV 281
R+ +IRR V A+P L R+
Sbjct: 252 TRYTDVQIRRFVKKALPGMLDDRL 275
>gi|440717705|ref|ZP_20898186.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
gi|436437128|gb|ELP30792.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
Length = 279
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 144/264 (54%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A +TC L L FD+G P + +FISHAH+DHI LP YV+ R
Sbjct: 14 GLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSRR 73
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PP I +P + ++ + R +D + LVGL G+E + ++ VK+
Sbjct: 74 RMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSMN 133
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
+H I + G++VY + KLK EYL LPG++I+ LK +GTEIT P A+TGDT
Sbjct: 134 VHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPKG 193
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ + N + ++IL+ E T+ + +GH H+ + E A+ F+N+ I+ H S
Sbjct: 194 L--DNNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHAS 251
Query: 259 ARHKVDEIRRAV-DAVPAPLAGRV 281
R+ +IRR V A+P L R+
Sbjct: 252 TRYTDVQIRRFVKKALPGMLDDRL 275
>gi|283777841|ref|YP_003368596.1| hypothetical protein Psta_0039 [Pirellula staleyi DSM 6068]
gi|283436294|gb|ADB14736.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 279
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 150/268 (55%), Gaps = 3/268 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+Q Q +EG S A ++ P + + FD+G P + + F++H H+DHI LP+Y
Sbjct: 10 IQHQDLTIEGYSRAAVQSYWRIPEMKIGFDLGAQPWDFMGTSTWFVTHTHLDHIAALPVY 69
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
VA R + +M PP I VP + E++ +V R+D L L G+ G+E + ++L V
Sbjct: 70 VARRRMMKMDPPLIYVPEHSRALCEEVLKVFSRLDRGRLPCDLRGVKPGDEIELSRELVV 129
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
A T H + S GYVV+ + KLK EY GL G++I+ ++ SG E+T P++A+ GD+
Sbjct: 130 TASATKHTVPSVGYVVWQRRNKLKDEYQGLSGEQIRDIRLSGMEVTEEKRFPQLAYLGDS 189
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ + + + A+IL+ E T+V E+ +GH HL + VE ++F+N+ I+
Sbjct: 190 SPEGL--DNCPAMYEAKILITEMTFVAPGHRKEKIHKHGHMHLDDYVERKDRFKNELIIA 247
Query: 255 IHFSARHKVDEIRRAVD-AVPAPLAGRV 281
H S R++ +++ V A+P L GR+
Sbjct: 248 AHASTRYQDRQVKHYVQKALPDMLGGRL 275
>gi|291333995|gb|ADD93671.1| hypothetical protein DSM3645_01615 [uncultured marine bacterium
MedDCM-OCT-S04-C7]
Length = 279
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 145/270 (53%), Gaps = 3/270 (1%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
R + +G VEG S A ++ P L L FD+G P ++ + F+SH H+DHI LP
Sbjct: 8 RSLSHKGLTVEGYSRAAVQSYWRIPELKLGFDLGGQPWGFMATSTWFLSHTHLDHIAALP 67
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+YVA R + +M PPTI VP +E+L +D L TL+ GEE + ++
Sbjct: 68 VYVARRRMMKMDPPTIYVPEKAVVKIERLLRAVSDLDKGRLPCTLLPAHPGEEIELSREH 127
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V T H + S GYVV+ ++KLK EY L G++I+ L+ SG ++T V TP V + G
Sbjct: 128 VVTVSSTCHTLPSVGYVVWERRRKLKNEYQELSGNQIRDLRLSGIDVTDEVRTPLVGYLG 187
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
D+ D + + + A IL+ E T+V S E YGH HL + + E+F+N I
Sbjct: 188 DSNPDGL--DRCPAMYEAMILIAEMTFVAKSHRRENIHKYGHMHLEDFLARRERFQNDVI 245
Query: 253 LLIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
+ H+S R+ + IR+ + +P L GR+
Sbjct: 246 IAAHYSTRYTDERIRQILSKRLPDLLDGRL 275
>gi|32476124|ref|NP_869118.1| hypothetical protein RB9875 [Rhodopirellula baltica SH 1]
gi|32446668|emb|CAD76504.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 280
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 144/264 (54%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A +TC L L FD+G P + +FISHAH+DHI LP YV+ R
Sbjct: 15 GLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSRR 74
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PP I +P + ++ + R +D + LVGL G+E + ++ VK+
Sbjct: 75 RMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSMN 134
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
+H I + G++VY + KLK EYL LPG++I+ LK +GTEIT P A+TGDT
Sbjct: 135 VHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPKG 194
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ + N + ++IL+ E T+ + +GH H+ + E A+ F+N+ I+ H S
Sbjct: 195 L--DNNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHAS 252
Query: 259 ARHKVDEIRRAV-DAVPAPLAGRV 281
R+ +IRR V A+P L R+
Sbjct: 253 TRYTDVQIRRFVKKALPGMLDDRL 276
>gi|87307110|ref|ZP_01089256.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
gi|87290483|gb|EAQ82371.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
Length = 279
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 2/259 (0%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
R +++ +EG S A ++ P + + FD+G P + F++HAH+DH+ LP
Sbjct: 8 RKLEVNDLTIEGYSRAAVQSYWRIPEMKVLFDLGLQPWDFMGTPTSFVTHAHLDHVAALP 67
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
+YV+ R + +M PPTI +P V+Q+ +R+D + L+G+ G+E + ++L
Sbjct: 68 VYVSRRRMMKMDPPTIYLPETAIGPVQQMLSAFQRLDRGGMPCELIGVKPGDEIELSREL 127
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V T H I S GY+V+ ++KLK EY LPGD+I+ ++ SG ++T P++A+ G
Sbjct: 128 LVTVVPTKHTIPSVGYIVWQRRRKLKPEYQNLPGDQIRDIRLSGVDVTDEHRFPKLAYLG 187
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
D+ + + +A A L+ME T++ E+ GH HL ++V+ ++F+NK I
Sbjct: 188 DSRPEAM--DACPAFYEAETLIMEMTFLAPDHRREKIHKMGHIHLDDVVDRRDRFQNKTI 245
Query: 253 LLIHFSARHKVDEIRRAVD 271
+ HFS R+ +I+ V+
Sbjct: 246 IAGHFSVRYNDRQIKNYVE 264
>gi|449133562|ref|ZP_21769112.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
gi|448887727|gb|EMB18085.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
Length = 279
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 144/264 (54%), Gaps = 3/264 (1%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G +EG S A +TC L L FD+G P + +FISHAH+DHI LP YV+ R
Sbjct: 14 GLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSRR 73
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
+ +M PP I +P + ++ + R +D + L+GL G+E + ++ VK+
Sbjct: 74 RMMKMDPPIIYLPDSAVDMAWKVLQTFRSLDRGAMPCELIGLLDGDETKIGREYVVKSMN 133
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
+H I + G++VY + KLK EYL LPG++I+ LK +GTEIT P A+TGDT
Sbjct: 134 VHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPKG 193
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ + N + ++IL+ E T+ + +GH H+ + E A+ F+N+ I+ H S
Sbjct: 194 L--DNNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHAS 251
Query: 259 ARHKVDEIRRAV-DAVPAPLAGRV 281
R+ +IRR V A+P L R+
Sbjct: 252 TRYTDVQIRRFVKKALPGMLDDRL 275
>gi|388493940|gb|AFK35036.1| unknown [Lotus japonicus]
Length = 210
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 87/110 (79%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLP 72
+G+ L+GY +EGLSI G ETCII AFDIGRCP+RA+ QNF+FI+HAH+DHIGGLP
Sbjct: 71 KGLNLEGYSIEGLSIGGQETCIIIHEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLP 130
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV 122
MY+A+RGLY +KP T+ VP CIKEDVE+L ++HR + ELN LV LDV
Sbjct: 131 MYIASRGLYNLKPATVFVPPCIKEDVEKLLDIHRTLGQVELNVELVALDV 180
>gi|262195938|ref|YP_003267147.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
gi|262079285|gb|ACY15254.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
Length = 290
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 153/273 (56%), Gaps = 4/273 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
+Q GY + G+S+ G T ++ L FD+G + LF+SHAHMDH+GGL +
Sbjct: 12 VQAGGYSIRGVSVGGVYTSMMVSELGAMFDVGMALRSFSGADRLFLSHAHMDHLGGLLAF 71
Query: 75 VATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+ RG Y + +P + +P+ I E V+ L + L V ++ G+ +R+DL
Sbjct: 72 LGMRGAYGVERPLEVFLPAAIAEPVQALLRAAEPLQRFPLKIATVPMEPGQVVELRRDLS 131
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+A +T+H + S GY + KL+ E+ LPG EI + + +G ++ T E+A+ D
Sbjct: 132 VRALRTFHPVPSLGYQFFRRVSKLRDEFRDLPGAEIGRRRRAGEDLFREETHLELAYVTD 191
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T+ + E ++ LR+++L++E T++D ++ +R H HL E++E A+ FEN+A++
Sbjct: 192 TLVRVLDTEPSL--LRSKVLILECTFLDQRKSLADSRAGCHIHLDELLERADSFENEALV 249
Query: 254 LIHFSARHKVDEIRRAV-DAVPAPLAGRVFALT 285
L+HFS +K E+ R + + P LA R+ +
Sbjct: 250 LMHFSQLYKPREVPRILRERCPESLARRIVSFA 282
>gi|301122551|ref|XP_002909002.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
gi|262099764|gb|EEY57816.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
Length = 283
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 149/258 (57%), Gaps = 6/258 (2%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
GY + S+AG E+C S+D+AFD+G R ++++ +FI+H H+DHIG + + A R
Sbjct: 10 GYTLHLRSVAGIESCCYVDSIDIAFDLGCLVGRVVNKSHVFITHGHIDHIGAVVAHAARR 69
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMD-HSELNHTLVGLDVGEEFCMRKDLFVKAF 137
L + KP + VP+ ++ +E + + M + +V L +E + V+A
Sbjct: 70 ALQKQKPASYFVPAHLEPHLESILKSTAVMQGDAPFPAKIVPLQPFDEVHISAKYLVRAV 129
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
T H + S GY++Y K +LK EY LPG EI LK +G EIT TPE+A+TGDT +
Sbjct: 130 PTKHRVPSLGYILYEKKNRLKPEYRQLPGVEIAALKRAGQEITSAELTPEIAYTGDTTIE 189
Query: 198 FI----VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN-KAI 252
V+E D+L+ ++L+ E+TY D T++ A GH HL ++ + F++ ++
Sbjct: 190 VFTTAAVNEGTKDLLQVKVLITEATYADSKMTIQDAVARGHMHLDQLAIHENLFQHVGSL 249
Query: 253 LLIHFSARHKVDEIRRAV 270
+L+HFSAR+ +E+ +++
Sbjct: 250 VLVHFSARYSTEELAQSI 267
>gi|149918433|ref|ZP_01906923.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
gi|149820733|gb|EDM80143.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
Length = 279
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 2/245 (0%)
Query: 17 LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVA 76
+ G ++ G++ G ET + P L + FDIG CP +AL + L ISH H DH+GG+ Y++
Sbjct: 11 VSGLRLVGVTEGGVETNLRVPELGVMFDIGMCPPKALGFDRLLISHGHADHLGGIHYYLS 70
Query: 77 TRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKA 136
RG+ + K PTI P + +EQ+ E+ ++ + + L G+ + + L A
Sbjct: 71 QRGMRKQKVPTIAAPKALAPQLEQMLELWSAVEGFDYRYDLRPAGPGDRVELGRGLTAIA 130
Query: 137 FKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS 196
T H + S +V+ KL + G P EI+ K G IT + P + +GDT
Sbjct: 131 VPTVHRVPSLAWVIERRVNKLLPAFQGKPNQEIRAAKERGETITESTDVPLLCVSGDTTI 190
Query: 197 DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
D + A+ + + ++LV E T D+ VE R YGHTH+ EI+E+AE+FE +A++L+H
Sbjct: 191 DAFL--ASPLMRQVKVLVHECTSWSDTRGVEDTRAYGHTHVDEIIEHAERFEGEALVLVH 248
Query: 257 FSARH 261
S RH
Sbjct: 249 RSLRH 253
>gi|383768034|ref|YP_005447017.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
gi|381388304|dbj|BAM05120.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
Length = 313
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 152/270 (56%), Gaps = 7/270 (2%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
++V+GLSIAG E+ + P LD+ FDIG CP L F+ ++H HMDH+ G+ Y + R
Sbjct: 31 FRVQGLSIAGEESVVAVPELDVCFDIGSCPKAVLPSPFVALTHGHMDHVAGIAYYFSQRP 90
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT 139
M T++ P +++ ++ L + ++++ + +TL L GE ++ + F++ F+T
Sbjct: 91 FQGMSAGTVVCPPSLRDGLDGLMKAWQKIERQKTPYTLTPLADGEMLEIKNNHFLRPFRT 150
Query: 140 YHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT-MSDF 198
H + S GY V + KLK + +G+P +EI + K++G I T P V++TGDT D
Sbjct: 151 VHTVPSSGYSVLEKRTKLKPKLVGMPQEEIVRRKNAGEAIVDTRFVPLVSYTGDTGWGDH 210
Query: 199 IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA-ILLIHF 257
++ +VL R+L+ E T+++ +A H HL IVE E+ ++ ++L H
Sbjct: 211 LLIP---EVLECRVLITECTFMERGHR-RRAGVGKHLHLDHIVELVEQVGDETDVILTHL 266
Query: 258 SARHKVDEIRRAV-DAVPAPLAGRVFALTE 286
S R +++ R+A+ A+PA RV L +
Sbjct: 267 SRRTHMNDARKALAGAIPADKLDRVHLLMD 296
>gi|418741772|ref|ZP_13298146.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090109|ref|ZP_15550910.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410001372|gb|EKO51986.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410751220|gb|EKR08199.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 227
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 131/212 (61%), Gaps = 2/212 (0%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVG 119
++H+H+DH GLP Y++ R L ++KPP I VP+ +++ + ++ +++ +++ + L
Sbjct: 2 LTHSHLDHSSGLPYYISQRSLRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSA 61
Query: 120 LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEI 179
+ G++ + + F +T+H + SQGY +Y ++KLK+E+ + +E+ + E+
Sbjct: 62 VSPGDKIDLDSNHFFSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEV 121
Query: 180 TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE 239
+ P ++F+GDT +++++ DV + IL +E TY+DD V QAR++GHTHL E
Sbjct: 122 SELSEIPVISFSGDTKIEYVLEHE--DVANSSILFIECTYIDDERNVAQAREWGHTHLDE 179
Query: 240 IVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
I++ F+N+ I+LIHFS R+ V IR +D
Sbjct: 180 ILDNLSSFKNEKIVLIHFSKRYSVSYIREVLD 211
>gi|325186919|emb|CCA21463.1| nuclear ribonuclease Z putative [Albugo laibachii Nc14]
Length = 295
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 138/266 (51%), Gaps = 7/266 (2%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
Y++ S AG E+ +D+ D G C A +++ +FI+H H+DHI G+ + A R
Sbjct: 6 NYRIHVRSTAGIESAYYIDEIDIMLDCGVCFDLAYTKSNVFITHGHVDHIQGIVAHAARR 65
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK 138
L + VP + +V+ + + +M + L+ + +EF + D VKA+K
Sbjct: 66 ALMSLPTANYHVPHWLVSEVQNILSSYSKMQEKTIQANLIPVKEKDEFKISHDHIVKAYK 125
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF 198
T+H + S GYVVY + LKQE++ L EI + G E+ PE+A+TGDT
Sbjct: 126 TFHRVPSLGYVVYKRNKALKQEFVNLSFLEIAGISKQGIELNVISIDPEIAYTGDTTMQL 185
Query: 199 I------VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN-KA 251
D D LRA++L+ E+TY+D + +E+A D GH HL +++ A FEN +
Sbjct: 186 FHAEGCSYDGTKNDFLRAKVLITEATYIDKAALIEKAEDRGHIHLEQVINDAYLFENVQQ 245
Query: 252 ILLIHFSARHKVDEIRRAVDAVPAPL 277
+++ H SAR+ + + +P L
Sbjct: 246 LIITHTSARYNEHDFNACRERLPHSL 271
>gi|413921296|gb|AFW61228.1| hypothetical protein ZEAMMB73_071826 [Zea mays]
Length = 306
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 45/169 (26%)
Query: 10 KSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIG 69
K+ ++++GY V+G+SI G ETC+IFP+L LAFDIGRCP
Sbjct: 30 KAKHHIEIKGYPVDGVSIGGQETCVIFPTLSLAFDIGRCP-------------------- 69
Query: 70 GLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR 129
+++PPTI VP+C+++ VE+LFEVH MD S+LNH LV L+V EE+ +R
Sbjct: 70 ------------QLRPPTIFVPACLRDLVERLFEVHHAMDQSDLNHNLVPLEVREEYELR 117
Query: 130 KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE 178
+DL +GYV+YSVKQKLKQE++GLPG EIK+LK SG E
Sbjct: 118 RDL-------------KGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVE 153
>gi|374585646|ref|ZP_09658738.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
gi|373874507|gb|EHQ06501.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
Length = 283
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 3/250 (1%)
Query: 18 QGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
+ ++ G S G TCI P L FD G +R + +SH H+DH GL ++
Sbjct: 9 KNFQFLGNSEGGTHTCIALPQYRLLFDTGVGSARLTEYPLILLSHGHLDHASGLAYLISQ 68
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
R L ++ PP I VP + E + Q+ ++ ++ L +D + ++ + F +A
Sbjct: 69 RSLRKLAPPEIYVPPEVYEPLTQIMKLWGDIEDYHSQFHLHAVDYDRHYPLKGNQFFRAI 128
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
++ H + S GY + KLK E+L LPG EI + K++G + P + F+GDT +
Sbjct: 129 RSSHRVPSNGYSIVEKVLKLKPEHLNLPGKEIARRKATGENLFNETYQPIITFSGDTTIE 188
Query: 198 FIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF-ENKAILLIH 256
F+ + N V ++RIL +E TY+ + +AR++GH HL EIV AE F E + + LIH
Sbjct: 189 FVTE--NEIVQKSRILFLECTYICEKRQTARAREWGHIHLDEIVANAEAFREVEKLFLIH 246
Query: 257 FSARHKVDEI 266
FS R+ E+
Sbjct: 247 FSPRYGRREV 256
>gi|443700634|gb|ELT99514.1| hypothetical protein CAPTEDRAFT_108450, partial [Capitella teleta]
Length = 242
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 135/233 (57%), Gaps = 7/233 (3%)
Query: 57 FLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-- 114
L SH H DHI G+ + A R LY M+P + +P+ +++ ++ + E +++ S+
Sbjct: 1 LLICSHGHTDHIAGIASHAAKRSLYNMRPASYYIPAHLEKPLDLIAETFSQLNESQEGRG 60
Query: 115 --HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKL 172
+T V E + VK F T H + SQGY+VY ++ K EY L +E+++L
Sbjct: 61 RINTCVVTPTSEPIQLPNGYKVKVFPTQHRVASQGYIVYRSEKLRKPEYANLKNEEMREL 120
Query: 173 KSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS-TTVEQARD 231
SG + +Y TP +A+TGDT+ + + D+LR R+L+ E+TY+DD+ + + +AR+
Sbjct: 121 IQSGIDFSYLKETPLLAYTGDTLPEIYDEPFTPDLLRVRLLITEATYIDDNPSAIPKARE 180
Query: 232 YGHTHLSEIVEYAEKFEN-KAILLIHFSARHKVDEIR-RAVDAVPAPLAGRVF 282
+GHTHL EI++ EKF + + ILL+HFS ++ IR R + +P L +V
Sbjct: 181 WGHTHLQEIIDRKEKFRDLERILLVHFSDKYSARYIRQRTAEMLPNNLKQKVI 233
>gi|413945463|gb|AFW78112.1| hypothetical protein ZEAMMB73_839838 [Zea mays]
Length = 285
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%), Gaps = 4/130 (3%)
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVA-TRGLYRMKPPTIIVPSCIKEDVEQLFEVHRR-M 108
R L+ L +S A H G P +V RGL+R++ PTI VP+C+ + VE+LFEVHRR M
Sbjct: 5 RRLAGVPLRLSRAPRPHRG--PSHVCGQRGLFRLRSPTIFVPACLWDLVERLFEVHRRAM 62
Query: 109 DHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDE 168
D SELNH LV L+V EE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG E
Sbjct: 63 DQSELNHNLVPLEVREEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSE 122
Query: 169 IKKLKSSGTE 178
IK+LK SG E
Sbjct: 123 IKRLKLSGVE 132
>gi|442321491|ref|YP_007361512.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
gi|441489133|gb|AGC45828.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
Length = 283
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 148/269 (55%), Gaps = 5/269 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALS-QNFLFISHAHMDHIGGLPM 73
+Q Y V G+S+ G T + P LD+ D+G P R+ + +F+SHAH DH L
Sbjct: 6 VQAGPYTVRGISVGGVYTSLQVPELDVVLDVG-VPIRSFAGTERIFLSHAHPDHASALGA 64
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+ R L P + +P+ I+ V + EV R+ H+ + V + G+ + + L
Sbjct: 65 LLGIRRLLGKGAPQLFLPAEIEPTVREALEVLSRLHHTPMEARTVPMLPGDVQPLGQGLH 124
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+AF+T+H + S GY KL+ E+LG+P EI + + +G ++ V E+A+ D
Sbjct: 125 VRAFRTHHPVPSLGYQFLRRVTKLRPEHLGMPPQEIAQRRKAGEDLFTEVDHLELAYATD 184
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T++ + E + +R+LV+E T+VD +V+ ARD H HL E++ +A++F N+A++
Sbjct: 185 TLARVLETEPML--FDSRVLVIECTFVDPKRSVQDARDRAHLHLDELIAHADRFRNEALV 242
Query: 254 LIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
L+HFS +E+ + + +PA L RV
Sbjct: 243 LMHFSQSVGPEEVHAMIRERLPASLLERV 271
>gi|338534590|ref|YP_004667924.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
gi|337260686|gb|AEI66846.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
Length = 282
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 145/269 (53%), Gaps = 5/269 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRAL-SQNFLFISHAHMDHIGGLPM 73
+Q Y V G+S+ G T + P LD+ D+G P R+ + +F+SHAH DH GL
Sbjct: 5 VQAGPYTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGS 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+ R L P + +P+ I+ +V+ V R+ H+ + V + G+ + LF
Sbjct: 64 LLGIRRLIGKGAPQVFLPAEIESNVQASLAVMSRLHHTAMEVHTVPMLPGDVRPLGHGLF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+AF+T+H + S GY + KL+ E+ LP EI K + +G ++ V E+A+ D
Sbjct: 124 VRAFRTHHPVPSLGYQFFRRISKLRPEFQSLPPQEIAKRRQAGEDLFDEVERLELAYATD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T+S + E ++ +R+L++E T++D TVE A+ H HL E++ A++F N+A++
Sbjct: 184 TVSRVLETEPSL--FESRVLILECTFIDARHTVEDAQARAHLHLDELIARADQFRNEALV 241
Query: 254 LIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
L+HFS + + + +P LA RV
Sbjct: 242 LMHFSQAFSPEAVHATLRTRLPPALAERV 270
>gi|115377210|ref|ZP_01464422.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|310821192|ref|YP_003953550.1| hypothetical protein STAUR_3935 [Stigmatella aurantiaca DW4/3-1]
gi|115365793|gb|EAU64816.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|309394264|gb|ADO71723.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 283
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 147/271 (54%), Gaps = 6/271 (2%)
Query: 14 GMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALS-QNFLFISHAHMDHIGGLP 72
+Q Y V G+S+ G T + P L + D G P R+ + + LF+SH H DH L
Sbjct: 4 AVQAGPYTVRGISLGGVYTSLQIPELGVVLDAG-VPIRSFAGTDRLFLSHGHPDHSSALG 62
Query: 73 MYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD 131
+ RGL + P + +P+ I+ V++ R+ S + GEE +
Sbjct: 63 SLLGIRGLVGKAAPLQVFLPAEIEAAVQEALAAAGRLHRSSTTIQAFPMLPGEERHLSHG 122
Query: 132 LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFT 191
L+V+AF+T+H S GY KLK E+ +PG+EI +L+ G ++ T E+A+
Sbjct: 123 LWVRAFRTHHAGPSLGYQFLRRVTKLKPEHQAMPGEEIARLRKQGADLFETTERLELAYA 182
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT+SD + E +VL +R+L++E TY+D E AR+ HTHL EI+ A++F+N+A
Sbjct: 183 TDTLSDVL--ETAPEVLHSRVLILECTYLDAKHPAEAARERLHTHLDEIIARADRFQNEA 240
Query: 252 ILLIHFSARHKVDEIRRAV-DAVPAPLAGRV 281
++L+HFS + +++ + + +PA L RV
Sbjct: 241 LVLMHFSQAYSPEQVHTLLQERLPALLRDRV 271
>gi|108757572|ref|YP_631594.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
gi|108461452|gb|ABF86637.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
Length = 306
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 146/269 (54%), Gaps = 5/269 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRAL-SQNFLFISHAHMDHIGGLPM 73
+Q Y V G+S+ G T + P LD+ D+G P R+ + +F+SHAH DH GL
Sbjct: 29 VQAGPYTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGS 87
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+ R L P + +P+ I+E+V+ V R+ H+ + V + G+ + + LF
Sbjct: 88 LLGIRRLIGKGAPQVFLPAEIEENVQASLAVMSRLHHTSMEVHTVPMLPGDVRPLGQGLF 147
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+AF+T+H + S GY + KL+ E+ LP EI + + +G + V E+A+ D
Sbjct: 148 VRAFRTHHPVPSLGYQFFRRVAKLRLEHQSLPPQEIARRRQAGEALFDEVERLELAYATD 207
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T+S + E + +R+L++E T+VD +V+ A+ H H+ E++ A++F N+A++
Sbjct: 208 TLSRVLDTEPGL--FDSRVLILECTFVDARHSVQDAQAKAHLHVDELLARADQFRNEALV 265
Query: 254 LIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
L+HFS + + + A +P LA RV
Sbjct: 266 LMHFSQALPPESVHATLRARLPPSLAERV 294
>gi|405351348|ref|ZP_11022831.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Chondromyces apiculatus DSM 436]
gi|397093239|gb|EJJ23962.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 266
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 143/257 (55%), Gaps = 5/257 (1%)
Query: 27 IAGHETCIIFPSLDLAFDIGRCPSRAL-SQNFLFISHAHMDHIGGLPMYVATRGLYRMKP 85
+ G T + P LD+ D+G P R+ + +F+SHAH DH GL + R L
Sbjct: 1 MGGVYTSLQVPELDVVLDVG-LPIRSFCGTDRIFLSHAHPDHASGLGSLLGVRRLIGKGA 59
Query: 86 PTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQS 145
P + +P+ I+ +V++ V R+ H+ ++ V + G+ + LFV+AF+T+H + S
Sbjct: 60 PQVFLPAEIEANVQEALAVLSRLHHTAMDVRTVPMHPGDVQPLGHGLFVRAFRTHHPVPS 119
Query: 146 QGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANI 205
GY + KL+ E+ GLP +I + + +G ++ TV E+A+ DT+S + E ++
Sbjct: 120 LGYQFFRRITKLRPEHQGLPPQDIARRRQAGEDLFDTVERLELAYATDTVSRVLETEPSL 179
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+RIL++E T++D TVE A+ H HL E++ A +F N+AI+L+HFS +
Sbjct: 180 --FDSRILILECTFIDARHTVEDAQARAHLHLDELIARASQFRNEAIVLMHFSQAFAPES 237
Query: 266 IRRAVDA-VPAPLAGRV 281
+ + A +P+ L+ RV
Sbjct: 238 VHATLRARLPSELSERV 254
>gi|406878875|gb|EKD27670.1| Metallo-beta-lactamase [uncultured bacterium]
Length = 241
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 34/263 (12%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
M L K+EG+SIAG ET I P L + FDIG+CP +A+S L I+H H+DHIGG+ Y
Sbjct: 1 MILNQIKIEGISIAGEETNIRMPKLGIMFDIGKCPEKAVSIPNLLITHGHVDHIGGIAHY 60
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
+ R + +M PP I P + ++Q+ + + S+ +++ E + K LF+
Sbjct: 61 LFARTIKKMTPPHIYAPPSLIPPIKQIVRIFADIHKSDYPANYHSMELNEFHNINKKLFI 120
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
K H I + Y++Y K+ P ++FTGDT
Sbjct: 121 KVIPASHTIPTYCYLLYKTKK----------------------------DNPFLSFTGDT 152
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ + E N + ++ IL++E T+ D +E+A Y H H+ +I+E A+ F+N+ I+L
Sbjct: 153 TIEIL--ENNPLLYKSGILMIECTFFGDKKQIEKADAYHHIHIDQILERAKHFKNEYIVL 210
Query: 255 IHFSARHK----VDEIRRAVDAV 273
H S R+ V+E+++ A+
Sbjct: 211 CHKSPRYSKKMIVEELKKKTPAI 233
>gi|383456700|ref|YP_005370689.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
gi|380734183|gb|AFE10185.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
Length = 282
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 145/269 (53%), Gaps = 5/269 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRAL-SQNFLFISHAHMDHIGGLPM 73
+Q Y V G+S+ G T ++ P L + D G P R+ + + +F+SH H DH L
Sbjct: 5 VQAGPYTVRGVSVGGVYTSLLVPELGVLLDAG-IPIRSFATTDRIFLSHGHADHASALGS 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
+ R L PP + +P+ I+ V++ R+ + + V + G+ +++DL+
Sbjct: 64 LLGIRALVGKGPPFVYLPAEIEAPVQEALAALGRLHRMKSDIRTVPMRPGDTVKVQQDLW 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
V+AF+T+H + S GY KLK E+ LP +I + + +G + V E+A+ D
Sbjct: 124 VRAFRTHHPVPSLGYQFLRRVAKLKPEFRELPPAKIGRRRQAGEPLFDEVERLELAYCTD 183
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T+S+ + E + +R+L++E T++D TV A++ H HL EI A++F+N+A++
Sbjct: 184 TLSNVL--ERQPSLFDSRVLILECTFIDAERTVRDAQERAHIHLEEIASMADRFQNEALV 241
Query: 254 LIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
L+HFS + ++ + A +PA L RV
Sbjct: 242 LMHFSQAYSPAQVHATLQARLPASLFERV 270
>gi|444918946|ref|ZP_21239000.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
gi|444709229|gb|ELW50252.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
Length = 283
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 145/277 (52%), Gaps = 16/277 (5%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALS-QNFLFISHAHMDHIGGLPMYVATR 78
Y + G+S+ G T + P L + D G P R+ + + +F+SH H DH L + R
Sbjct: 10 YTIRGISVGGVYTSLQVPELGVVLDAG-VPIRSFAGTDRIFLSHGHSDHASALGSLLGIR 68
Query: 79 GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
GL + PP + +P+ I+ + + V R+ + LN V + G+ + L+V+AF
Sbjct: 69 GLIGKDTPPRVFLPAEIEAPLRETLAVQGRLLRASLNVETVPMLPGDTHSLGHGLWVRAF 128
Query: 138 KTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD 197
+T+H + S GY + KLK E+ L +EI + + +G ++ V E+A+ DT+S
Sbjct: 129 RTHHPVPSLGYQFFRRVSKLKPEHQHLLPEEIARGRKAGADLFDEVERLELAYATDTLSR 188
Query: 198 FIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHF 257
+ E + ++ +R+L++E T++D TV A++ H H EI AE+F+N+A++L+HF
Sbjct: 189 VL--ETSPELFDSRVLILECTFLDGKRTVTDAQERSHLHFEEISARAERFQNEALVLMHF 246
Query: 258 SARHKVDEIRRAVDA-VP----------APLAGRVFA 283
S + E+ + A VP AP GR F
Sbjct: 247 SQAYSPAEVHAVLRAQVPERLRDRLRIFAPETGRWFG 283
>gi|385791550|ref|YP_005822673.1| hypothetical protein FSU_2875 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326957|gb|ADL26158.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 308
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 146/277 (52%), Gaps = 19/277 (6%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G SI+G T I P LD D+G CP A+ N +F++HAH DH L + + R +
Sbjct: 36 ISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRHHSLRKMM 95
Query: 82 RMKPPTII-VPSCIKEDV------EQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDL 132
++ ++ +P C+ E+ E LFE + + E+ G + RKDL
Sbjct: 96 GVERDSVYYMPECVSENAKAWIKAEALFEGVGEAKFRYPEIEPVTAGELQFLRY--RKDL 153
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
++AF+ H I + G +Y K+KLK E+LG EI +L+ +G EIT V P V+F G
Sbjct: 154 ALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVYDPLVSFMG 213
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV----EYAEKFE 248
D + + ++D N V ++++L+ E T++DD ++ GH+HL +IV E ++ +
Sbjct: 214 DCLGESLLD--NSRVFQSKVLITECTFLDDGEEA-MSKKKGHSHLKDIVHALNELDDEIK 270
Query: 249 NKAILLIHFSARHKVDEIRRAVD-AVPAPLAGRVFAL 284
+ I+L HFS ++ IR +D A+P R+ A
Sbjct: 271 CEKIILSHFSMKYSERHIREMLDKAIPEKFKERIVAF 307
>gi|261416710|ref|YP_003250393.1| hypothetical protein Fisuc_2325 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373166|gb|ACX75911.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 295
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 146/277 (52%), Gaps = 19/277 (6%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G SI+G T I P LD D+G CP A+ N +F++HAH DH L + + R +
Sbjct: 23 ISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRHHSLRKMM 82
Query: 82 RMKPPTII-VPSCIKEDV------EQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDL 132
++ ++ +P C+ E+ E LFE + + E+ G + RKDL
Sbjct: 83 GVERDSVYYMPECVSENAKAWIKAEALFEGVGEAKFRYPEIEPVTAGELQFLRY--RKDL 140
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
++AF+ H I + G +Y K+KLK E+LG EI +L+ +G EIT V P V+F G
Sbjct: 141 ALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVYDPLVSFMG 200
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV----EYAEKFE 248
D + + ++D N V ++++L+ E T++DD ++ GH+HL +IV E ++ +
Sbjct: 201 DCLGESLLD--NSRVFQSKVLITECTFLDDGEEA-MSKKKGHSHLKDIVHALNELDDEIK 257
Query: 249 NKAILLIHFSARHKVDEIRRAVD-AVPAPLAGRVFAL 284
+ I+L HFS ++ IR +D A+P R+ A
Sbjct: 258 CEKIILSHFSMKYSERHIREMLDKAIPEKFKERIVAF 294
>gi|29841375|gb|AAP06407.1| similar to GenBank Accession Number CAD22100 RNase Z in Arabidopsis
thaliana [Schistosoma japonicum]
Length = 268
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 134/273 (49%), Gaps = 37/273 (13%)
Query: 20 YKVEGLSIAGHETCIIFPSLD--LAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
+++ G S+AG+ETC+ FDIG P + +++FISH H DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQL---FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
R L ++ T +P + V+ + F S+ T + ++ G F + V
Sbjct: 69 RALNGLRGATYFMPKHLVPHVKAVCDSFTAMAEKHDSDFVGTFIPVEPGNRFELSDGWRV 128
Query: 135 KAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT 194
+F TYH I S GY++Y +GTE+ PE+A+ GD+
Sbjct: 129 VSFSTYHSIISVGYLLY-------------------YRDPNGTEV------PEIAYLGDS 163
Query: 195 MSDFIVDEANI---DVLRARILVMESTYVDD-STTVEQARDYGHTHLSEIVEYAEKFEN- 249
++ EAN D+L ++L+ME+T++D+ +E AR+ GHTHL EI + A ++
Sbjct: 164 RFT-VIHEANSICPDLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDEIRQNASLLKSV 222
Query: 250 KAILLIHFSARHKVDE-IRRAVDAVPAPLAGRV 281
I LIHFS R+ ++ IR +P L R+
Sbjct: 223 DYIYLIHFSDRYSYNDIIRLCYKDMPDWLVNRI 255
>gi|413950468|gb|AFW83117.1| hypothetical protein ZEAMMB73_323162 [Zea mays]
Length = 176
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
Query: 108 MDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGD 167
MD SELNH LV L+V EE+ +R+DL V+AF+TYH I SQGYV+YSVKQKLKQE++GLPG
Sbjct: 1 MDQSELNHNLVPLEVREEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGS 60
Query: 168 EIKKLKSSGTE---ITYTVTTPEVAFTG 192
EIK+LK SG E Y V EV T
Sbjct: 61 EIKRLKLSGVEEVSDNYCVYPNEVHHTA 88
>gi|414590636|tpg|DAA41207.1| TPA: putative dnaJ chaperone family protein [Zea mays]
Length = 581
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 42/185 (22%)
Query: 1 MATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFI 60
+AT++K + ++++GY V+G+SI G + + R P
Sbjct: 25 LATRSK----AKHHIEIEGYPVDGVSIGG-----------VPLRLSRAPR---------- 59
Query: 61 SHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGL 120
H HI G RGL+R+ PPTI VP+C+++ VE+LFEVHR MD SELNH LV L
Sbjct: 60 PHRGPSHICG------QRGLFRLCPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPL 113
Query: 121 DVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEIT 180
+V EE+ +R+DL V+AFKTYH I SQ + S P E++ L+ E
Sbjct: 114 EVREEYELRRDLKVRAFKTYHAIPSQANPMESC-----------PSKEVENLREKLVEEN 162
Query: 181 YTVTT 185
+ + T
Sbjct: 163 FYLIT 167
>gi|358331856|dbj|GAA50605.1| ribonuclease Z chloroplastic [Clonorchis sinensis]
Length = 261
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 37/240 (15%)
Query: 20 YKVEGLSIAGHETCIIFPS--LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
Y+V SIAG+ETC+ S + AFDIG P+ +S + +F+SH H DH+G + ++
Sbjct: 9 YEVFSWSIAGNETCVGVRSGEMRFAFDIGFAPNPMISCDHVFVSHGHADHVGAIAQHMKK 68
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDH-----SELNHTLVGLDVGEEFCMRKDL 132
R L + + +P + E V + + + M +E + LV L G + ++
Sbjct: 69 RHLNHLPKASYYLPPWLIEHVRGICKAYAAMSELASEGTEFDCPLVPLSPGNRMQLPENW 128
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTG 192
V+A +T+H ++SQGY++ S + + QEY PE+A+ G
Sbjct: 129 IVEAIETHHSVKSQGYIL-SKRDRDGQEY------------------------PEIAYLG 163
Query: 193 DTMSDFIVDEANID---VLRARILVMESTYVD-DSTTVEQARDYGHTHLSEIVEYAEKFE 248
D+ ++ EA +L R+L+ME+T++D +E+A +GHTHL+E+ + F+
Sbjct: 164 DSRFS-VLTEARTSCPALLSVRLLIMEATFLDRPERMLERAVSHGHTHLTELKQNPSLFK 222
>gi|429854058|gb|ELA29091.1| RNase z [Colletotrichum gloeosporioides Nara gc5]
Length = 327
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 116/281 (41%), Gaps = 41/281 (14%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G L + ++H H DH P +
Sbjct: 31 YTLIGKSRAAWHTSFVIPQLNLLLDAGLV-VNDLRPKHIVLTHTHSDHCLLAPAFTK--- 86
Query: 80 LYRMKPPTIIVPS-CIK--------------------EDVEQL--------FEVHRRMDH 110
R PP II+P+ C K D E L + R +
Sbjct: 87 --REDPPDIILPAECRKLFDDYVLAKTLLNRGGTYTGADAESLGLKVDGQGIDADGRTEG 144
Query: 111 SEL---NHTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
H + + G+ +RK ++ V FK H + S GY+ + KLK EY LP
Sbjct: 145 DRAFLGTHNTIPVKPGDTLPLRKVKNMTVSVFKCDHNVPSVGYLFSTTNHKLKPEYTSLP 204
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTT 225
G EIKKL+ +G EIT VTTP AF GD + + E +++ E +++ D
Sbjct: 205 GPEIKKLRQAGVEITAPVTTPVFAFLGDGTATTLAAEPEWLRQEVAVVITECSFLYDKHD 264
Query: 226 VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
QA HT ++ + K+ +LIHFS R+ +I
Sbjct: 265 A-QAEKTKHTKWKDLEKVVRKWPKTTFILIHFSMRYSNKDI 304
>gi|326427790|gb|EGD73360.1| hypothetical protein PTSG_05071 [Salpingoeca sp. ATCC 50818]
Length = 486
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 17/277 (6%)
Query: 17 LQGYKVEGLSIAGHETCII------FPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGG 70
L G ++ S AGH TCI P L + FDIG C + ++ +F+SH H DH+G
Sbjct: 5 LDGLEITSHSSAGHGTCITVTTSNPLPRLSICFDIGACLTESVQAQHVFVSHCHTDHVGS 64
Query: 71 LPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVG----LDVGEEF 126
L ++ R + P T VP + + ++ ++ +D + + G
Sbjct: 65 LMLHARAREMCS-GPATYYVPEPVIPHLRRMQQLFADLDSDGVPKVPPARFEPIWPGRVV 123
Query: 127 CMRKDLFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYLGLPGDEIKKLKSSGTEITYTVT 184
+ K VK H + + V + + L E+ GLP EIK L +
Sbjct: 124 PVGKGFAVKVLAVEHRVHNAFAFVLQRRDRLPLPPEFRGLPPMEIKALYDENVVQKFGPP 183
Query: 185 TPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
+ ++GD + ++ A VL R+L+ E TY+DD T +A Y H HL E+V
Sbjct: 184 KALLTYSGDCVLRSLLKHAF--VLSTRVLICELTYLDDRTE-SKAEKYMHVHLKELVPAL 240
Query: 245 EKFENKAIL-LIHFSARHKVDEIRRAVDAVPAPLAGR 280
+F N + L L+HFS R+ + I + A+P + R
Sbjct: 241 HRFRNLSHLHLVHFSTRYCAESICGHLMALPTRMQDR 277
>gi|299469717|emb|CBN76571.1| metallo-beta-lactamase superfamily protein [Ectocarpus siliculosus]
Length = 604
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 127/258 (49%), Gaps = 15/258 (5%)
Query: 13 RGMQLQGYKVEG-LSIAGHETCI------IFPSLDLAFDIGRCPSRALSQNFLFISHAHM 65
R M G+ V G S AG +C + + FD+G CPS L +F+SH H+
Sbjct: 272 RAMTGGGFFVAGAWSKAGVCSCFNVRHRHLLGKHGVVFDMGVCPSEVLHVAHVFVSHGHL 331
Query: 66 DHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEE 125
DH G + + R L + P + + + +E++ + ++ + + +V + +
Sbjct: 332 DHCGAIVSHARLRALSQGPPAKYYMGAELASGMEKVRKAFEEVEGASIAMDIVAVGPEDR 391
Query: 126 FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-QKLKQEYLGLPGDEIKKLKSSGTEITYTVT 184
+ + FV+ F H + + G+ + +K LK EY L G EI L+ G ++ +
Sbjct: 392 VDLGQGCFVRPFLVKHRVDALGFALMRLKTDGLKHEYRQLDGREIGALRKRGVDVQSSHE 451
Query: 185 TPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
T EV +TGDT+ D +V + V AR+L+ME TY+D + A+++ H+ ++++
Sbjct: 452 TVEVVYTGDTVMDGLVSQPL--VWEARMLIMEVTYLDGDGSA-AAKNF---HVHDVLDNM 505
Query: 245 EKFEN-KAILLIHFSARH 261
++ + +++ H S RH
Sbjct: 506 DRLRRVEQLVVAHVSERH 523
>gi|440791866|gb|ELR13104.1| hypothetical protein ACA1_098010 [Acanthamoeba castellanii str.
Neff]
Length = 331
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 30/288 (10%)
Query: 19 GYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
G+ + G S + +T P L + D G C R ++F++H H DH +
Sbjct: 46 GHTLTGYSRSADKTFFHIPELQVGLDAGMC--RGRQPKYVFLTHTHTDHSVDVAYMSKKE 103
Query: 79 GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMD--------HSELNHTLVGLDVGEEFCMRK 130
G+ T+ P + VE+ + +++ H + +L + G+ + ++
Sbjct: 104 GM------TLFCPEEVSGVVEEYIKASSQLNWGQPIPEGHGFMAGSLQPVKPGDTYLIKN 157
Query: 131 DLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA 189
L+ V + +H + GY K++L+ EY+G PG E+ +L+ G EI P
Sbjct: 158 GLYQVTVLRCFHSVACVGYAFAERKKRLRPEYVGTPGRELGRLRKEGVEIEEETYAPLFV 217
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYV-----DDSTTVEQARDYGHTHLSEIVEYA 244
+ GDT + V EA+ +V +++ E T++ DD +E+A GH H + + +
Sbjct: 218 YLGDTSTQ--VYEAHPEVFDYPVIITECTFIPDPQEDDQVIMERAERDGHIHWNSLQDIV 275
Query: 245 EKFENKAILLIHFSARHKVDEIRRAVDAV------PAPLAGRVFALTE 286
+ +LIHFS R+K I + D + P PL V + E
Sbjct: 276 LAHPDNTFVLIHFSLRYKERTIHQFFDDLATREENPLPLDNVVVFVGE 323
>gi|336268156|ref|XP_003348843.1| hypothetical protein SMAC_01866 [Sordaria macrospora k-hell]
gi|380094101|emb|CCC08318.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 359
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 40/282 (14%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G + + ++ +FI+H H DH P+Y+
Sbjct: 48 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNNSRPKH-IFITHGHNDHALLSPVYIK--- 103
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL-------------------------- 113
R PP P +K+ ++ + ++ L
Sbjct: 104 --REDPPDFHCPVGMKQVLQDYLRANTMLNLGGLIAPRPGKEIPLVEKDPETGEVVKEVI 161
Query: 114 --NHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI 169
H GL+ G+ +R K++ AF H + GY+ KLK E+ LP E+
Sbjct: 162 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFASLPPKEL 221
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVL---RARILVMESTYVDDSTTV 226
K +++SG E+T VTTP AF GDT + + +E L + +++ E +++ +
Sbjct: 222 KAIRASGQELTAPVTTPMFAFLGDTTTKTLEEEPMRGWLENDKLPVVITECSFLYEEHRA 281
Query: 227 EQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
QA HT +++ + ++ +++HFS R+ V E+RR
Sbjct: 282 -QAEKTKHTLWADLEKVVRRYPATTFVVMHFSLRYSVGEVRR 322
>gi|336469976|gb|EGO58138.1| hypothetical protein NEUTE1DRAFT_24301 [Neurospora tetrasperma FGSC
2508]
gi|350290338|gb|EGZ71552.1| hypothetical protein NEUTE2DRAFT_41347, partial [Neurospora
tetrasperma FGSC 2509]
Length = 320
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 39/281 (13%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G +++ ++ +FI+H H DH P+++
Sbjct: 25 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVINKSRPKH-IFITHGHNDHALSSPVFIK--- 80
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMD--------------------------HSEL 113
R PP P +K+ +E + ++ SE+
Sbjct: 81 --REDPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEVRDPETGEVVRSEI 138
Query: 114 --NHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI 169
H GL+ G+ +R K++ AF H + GY+ KLK E+ LP E+
Sbjct: 139 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 198
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRAR--ILVMESTYVDDSTTVE 227
K +++SG E+T VT+P AF GDT + + +E L + +++ E +++ +
Sbjct: 199 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLNEKLPVVITECSFLYEEHRA- 257
Query: 228 QARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
QA HT +++ + K+ +++HFS R+ V ++RR
Sbjct: 258 QAEKTKHTIWADLEKVIRKYPETMFVVMHFSLRYSVGQVRR 298
>gi|440798085|gb|ELR19154.1| nuclear RNase Z, putative [Acanthamoeba castellanii str. Neff]
Length = 323
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 7/255 (2%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
+ V G S AG T + D G P+ + + +FISH+H DH LP+ V R
Sbjct: 18 WHVSGYSRAGEATGFYVKQMRWFLDAG-VPTSQIKPDIVFISHSHTDHSMMLPLLVDRRK 76
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSE---LNHTLVGLDVGEEFCMRKDLFVKA 136
R+ P VP + V + +++++ D E +T + + G+ + +
Sbjct: 77 PLRVYAPAEAVP-FLAGYVAGMNKLNQQSDDYEDRSAGYTYIPVTTGQTVQIDNKFWAHV 135
Query: 137 FKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS 196
H + S GY + +++LK E+ G G E+ +L+ G E+ P +AF GDT
Sbjct: 136 IDCEHPVTSVGYCFFEKRKRLKDEFKGKSGRELGQLRKDGVELNEEAELPYMAFLGDTTG 195
Query: 197 DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
+VD + + ++ +E T+ + A H H S++ +A + + +LIH
Sbjct: 196 KVLVDHGKL-LSTYPVVFIECTFFQPDHK-DAAAGSQHLHWSDLRPFALEHRDTTFILIH 253
Query: 257 FSARHKVDEIRRAVD 271
FS R+ DEI D
Sbjct: 254 FSKRYSDDEIHAFFD 268
>gi|85081287|ref|XP_956690.1| hypothetical protein NCU00426 [Neurospora crassa OR74A]
gi|28917764|gb|EAA27454.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|40882153|emb|CAF05980.1| conserved hypothetical protein [Neurospora crassa]
Length = 359
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 40/282 (14%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G +++ ++ +FI+H H DH P+++
Sbjct: 49 YILTGKSRAAWHTSFVIPQLNLLLDAGLVINKSRPKH-IFITHGHNDHALSSPVFIK--- 104
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMD--------------------------HSEL 113
R PP P +K+ +E + ++ SE+
Sbjct: 105 --REDPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEIRDPETGEVVRSEI 162
Query: 114 --NHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI 169
H GL+ G+ +R K++ AF H + GY+ KLK E+ LP E+
Sbjct: 163 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 222
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVL---RARILVMESTYVDDSTTV 226
K +++SG E+T VT+P AF GDT + + +E L + +++ E +++ +
Sbjct: 223 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLTNDKLPVVITECSFLYEEHRA 282
Query: 227 EQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
QA HT +++ + K+ +++HFS R+ V ++RR
Sbjct: 283 -QAEKTKHTIWADLEKVIRKYPETTFVVMHFSLRYSVGQVRR 323
>gi|455790689|gb|EMF42541.1| beta-lactamase domain protein [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456986363|gb|EMG21950.1| beta-lactamase domain protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 136
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Query: 150 VYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR 209
+Y ++KLK+E+ + +E+ + E++ P ++F+GDT +++++ DV
Sbjct: 1 MYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYVLEHE--DVAN 58
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
+ IL +E TY+D+ V QAR++GHTHL EI+ F+N+ I+LIHFS R+ V IR
Sbjct: 59 SSILFIECTYIDNERNVAQAREWGHTHLDEILNNLSSFKNEKIVLIHFSKRYSVSYIREV 118
Query: 270 VD 271
+D
Sbjct: 119 LD 120
>gi|456970671|gb|EMG11422.1| hypothetical protein LEP1GSC151_5331 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 146
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSCGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++K P I VP+ +KE ++++ +++ +++ + L + G++ + + F
Sbjct: 64 YISQRSLRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTYHVIQSQGYVVYSVKQK 156
+T+H + SQGY +Y ++
Sbjct: 124 FSPHQTFHRVPSQGYTLYQKRKN 146
>gi|171686140|ref|XP_001908011.1| hypothetical protein [Podospora anserina S mat+]
gi|170943031|emb|CAP68684.1| unnamed protein product [Podospora anserina S mat+]
Length = 340
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 26/266 (9%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRM 83
G S A T + P L+L D G A +F++H H DH P ++ R
Sbjct: 50 GRSRAAWHTSFVIPELNLLLDAGLVVG-AHRPKHVFLTHGHSDHCLLTPAFL--RADPPH 106
Query: 84 KPPTIIVPSCIKEDVEQLFEVHRRMDHSEL---------------NHTLVGLDVGEEFCM 128
PP + P + +EQ + + ++ +T+ + GEE +
Sbjct: 107 TPPLLYCPEEMARPLEQFLQGSQLLNKGFTGFGEGEGECRLGRLGRYTITTMKPGEETGL 166
Query: 129 R----KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVT 184
R + A + H + S GYV + KLK EY GL G+EIK+L++ G EIT V
Sbjct: 167 RYVKGQRWKATAVRCDHTVASIGYVFSTTTSKLKPEYQGLKGEEIKRLRTEGVEITGEVE 226
Query: 185 TPEVAFTGDTMSDFIVDEANIDVL---RARILVMESTYVDDSTT-VEQARDYGHTHLSEI 240
P AF GDT + + +D R+++ E +++ +S EQA HT S++
Sbjct: 227 QPVFAFMGDTTAAVYEEGGEMDGFLKRGVRVVITECSFLRESREHREQADKTKHTMWSDL 286
Query: 241 VEYAEKFENKAILLIHFSARHKVDEI 266
++ +++HFS R++ ++
Sbjct: 287 ERVVRRWPGVVWVVMHFSLRYEEGDV 312
>gi|340516722|gb|EGR46969.1| predicted protein [Trichoderma reesei QM6a]
Length = 337
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 121/300 (40%), Gaps = 47/300 (15%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + PSL+L D G + ++ +F++H H DH P +V
Sbjct: 38 LTGRSRAAWHTSFVVPSLNLLLDAGLIVNNQRPKH-IFLTHGHSDHTLLAPAFVK----- 91
Query: 82 RMKPPTIIVPSCIKE------------------------------DVEQLFEVHRRMDHS 111
R PP + P+ +++ D E + R++ +
Sbjct: 92 RDDPPDVFCPAQMRDALDDFVLAKTLLNLGGEIRADDAEARGLAVDDEAVLARSRQLGRT 151
Query: 112 EL------NHTLVGLDVGEEFCMRK----DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEY 161
H GL G+ +R+ + AF H + GYV + Q+L+ E+
Sbjct: 152 PSATAFLSTHITHGLRAGDTVPLRRAQAQGIAATAFACDHTVPCLGYVFHKTTQRLRPEF 211
Query: 162 LGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVD 221
LPG E++ L+ +GT +T T P AF GDT + + E ++V E +++
Sbjct: 212 ASLPGPELQALRRAGTALTAPFTAPVFAFLGDTTARTLAAEPEWLRREIPVVVTECSFL- 270
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRV 281
+ QA HT E+ K+ +L HFS R+ EI R + +P P A V
Sbjct: 271 YAEHEPQAAKTKHTFWRELEPVIRKWPRTTFVLTHFSMRYDDAEIARFFNEMPDPPANMV 330
>gi|310799652|gb|EFQ34545.1| hypothetical protein GLRG_09689 [Glomerella graminicola M1.001]
Length = 324
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G + L +FI+H H DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNN-LRPKHIFITHGHADHCLLIPAFTK--- 83
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL-------------------------- 113
R PP + P +K+ +E ++ L
Sbjct: 84 --REDPPDVFCPVEMKKALEDFILAKTLLNRGGLYTSDDAESLGLPLDGKGVDDEGRTEG 141
Query: 114 ------NHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
H + G+ +R K + + H + S GYV + KL+ EY LP
Sbjct: 142 ERAFLGTHKTTAVRHGDVVPLRRLKGMDAMVIQCDHNVPSVGYVFTTTTHKLRPEYTALP 201
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTT 225
G E+K L+ SG E+T VTTP AF GDT + + E +++ E +++ D
Sbjct: 202 GAELKSLRLSGVELTAPVTTPVFAFLGDTTASTLAAEPEWLRQGIPVVITECSFLYDEHD 261
Query: 226 VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
QA HT ++ + K+ +L HFS R+ ++
Sbjct: 262 A-QAEKTKHTKWKDLEKVVRKWPKTTFILTHFSMRYSNKDV 301
>gi|357494723|ref|XP_003617650.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518985|gb|AET00609.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 102
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
+ E +K +G+ ++GY+VE LSI GHE C+IF + +AFDIGRCP R +S +FL IS
Sbjct: 12 GSSETESKKKSKGLNIEGYQVESLSIGGHEICVIFSNFRIAFDIGRCPPRFVSMDFLLIS 71
Query: 62 HAHMDHIGGLPMY 74
HAHM HI +Y
Sbjct: 72 HAHMFHIVSFSLY 84
>gi|380483616|emb|CCF40512.1| hypothetical protein CH063_00356 [Colletotrichum higginsianum]
Length = 324
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 116/283 (40%), Gaps = 45/283 (15%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G + ++ +F++H H DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNNHRPKH-IFLTHGHADHCLLIPAFTK--- 83
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL-------------------------- 113
R PP + P +K+ ++ ++ L
Sbjct: 84 --REDPPDVFCPVEMKKALDDFILAKTLLNRGGLYTSNDAESVGLELDGKGVDEEGRTEG 141
Query: 114 ------NHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
H + G+ +R K + + H + S GYV + KL+ EY LP
Sbjct: 142 ERAFLGTHKTTAVKHGDVVPLRRLKGMNATVVQCDHNVPSVGYVFTTTTHKLRPEYTSLP 201
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARI--LVMESTYVDDS 223
G E+K L+ SG E+T VTTP AF GDT + + A+ + LR I ++ E +++ D
Sbjct: 202 GPELKSLRQSGVELTAPVTTPVFAFLGDTTASTLA--ADPEWLRQGIPVVITECSFLHDE 259
Query: 224 TTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
QA HT ++ + ++ +L HFS R+ ++
Sbjct: 260 HDA-QAEKTKHTKWKDLEKVVRRWPKTTFILTHFSMRYSNKDV 301
>gi|302883789|ref|XP_003040793.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
gi|256721684|gb|EEU35080.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
Length = 322
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 36/278 (12%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G C ++A ++ +F++H H DH P +V
Sbjct: 30 YVLTGKSRAAWHTSFVIPQLNLLLDAGLCVNKARPKH-IFLTHGHSDHTLLSPAFVK--- 85
Query: 80 LYRMKPPTIIVPS---------------------CIKEDVEQLFEVHRRMDHSE-----L 113
R PP I P ED +QL + + L
Sbjct: 86 --REDPPDIYCPVEMVKVLDDFLLARTMLNLGGLITAEDADQLADTSDEGSNDPDRNGWL 143
Query: 114 N-HTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIK 170
N H G+ G+ +R K++ AF H + GYV V LK E+ G E+K
Sbjct: 144 NTHITHGVQHGDTVNLRRTKNVIATAFDCDHTVPCVGYVFSMVTHGLKPEFTSRKGPELK 203
Query: 171 KLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQAR 230
L+ SG EIT +TP AF GDT + + + +++ E +++ + + R
Sbjct: 204 ALRESGVEITAPRSTPIFAFLGDTTAATLAADPVWLQEGIPVVITECSFLYEEHKPQAVR 263
Query: 231 DYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
HT S++ K+ +L+HFS R+ + IR+
Sbjct: 264 T-KHTIWSDLEPVIRKWPRTTFVLMHFSMRYTEEAIRQ 300
>gi|414885981|tpg|DAA61995.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 166
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 49/56 (87%)
Query: 13 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHI 68
+G++++GY +EG+S+ GHETCI PSL++AFDIGR P A+SQ++LFI+HAH+DHI
Sbjct: 77 KGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRGPQFAVSQDYLFITHAHLDHI 132
>gi|290984460|ref|XP_002674945.1| predicted protein [Naegleria gruberi]
gi|284088538|gb|EFC42201.1| predicted protein [Naegleria gruberi]
Length = 325
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 115/268 (42%), Gaps = 33/268 (12%)
Query: 24 GLSIAGHE-----TCIIFPSLDLAFDIGRCPSRALSQN--FLFISHAHMDHIGGL----P 72
LS GH T P L D+G + +SQN I+H H DH L P
Sbjct: 46 ALSFVGHSKSAEATYFQIPQLSCNIDMGFIDKKYMSQNPNTFLITHTHADHTFYLAACQP 105
Query: 73 MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL----------NHTLVGLDV 122
+V R P + VP E VE + ++ + ++G++
Sbjct: 106 AFVN-----RSNPNRVYVPKGKVEFVENFLHSCQELNAGKTLPRESVQERKPIDIIGVEP 160
Query: 123 G---EEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE 178
G E+ + + K K H + GY +Y K+KLK+EY L G EI KL K G E
Sbjct: 161 GDLIEKIGGKDNYVAKVVKCDHSVPCNGYAIYERKKKLKKEYSELKGAEIAKLRKEKGDE 220
Query: 179 ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLS 238
I+ + P +A GDT + V E N +L ++V+E T++++ E A H H +
Sbjct: 221 ISDIILEPRIAIMGDTT--YRVFEMNPFLLEFPVIVVECTFLENGQE-ETALGAYHMHWN 277
Query: 239 EIVEYAEKFENKAILLIHFSARHKVDEI 266
I Y EK +L HFS R+ D I
Sbjct: 278 HIKPYIEKHPQTRFILTHFSLRYTDDFI 305
>gi|367050100|ref|XP_003655429.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
gi|347002693|gb|AEO69093.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
Length = 322
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 112/277 (40%), Gaps = 37/277 (13%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + P L+L D G L +F++H H DH P +V
Sbjct: 27 LTGRSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFLTHGHSDHTLLTPAFVK----- 80
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDH------SELN----------------HTLVG 119
R PP I P+ +K+ ++ + E N HT G
Sbjct: 81 RSDPPDIFCPAEMKDALDGFINAKTMLSEGGGIWPPESNATATKPPPPLHPLLRTHTTHG 140
Query: 120 LDVGEEFCMR-----KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLK- 173
L G +R AF H + GY+ +V KL+ +Y GLPG E+++L+
Sbjct: 141 LHPGTTVTLRHLSPPPTYTATAFACDHTVPCLGYLFSAVTPKLQPQYRGLPGAELRRLRE 200
Query: 174 SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR--ARILVMESTYVDDSTTVEQARD 231
G IT P +AF GD + + D L ++V E +++ + QA
Sbjct: 201 EEGVAITAPAAAPVLAFLGDGTAATLRDRPETVGLDRGVAVVVTECSFLWEEHRA-QAER 259
Query: 232 YGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
HT S++ ++ +L+HFS R+ +EIRR
Sbjct: 260 TRHTLWSDLEPVVRRWPRTVFVLVHFSLRYSDEEIRR 296
>gi|374339445|ref|YP_005096181.1| beta-lactamase superfamily metal-dependent hydrolase [Marinitoga
piezophila KA3]
gi|372100979|gb|AEX84883.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Marinitoga piezophila KA3]
Length = 276
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 25/250 (10%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRGL 80
S A + T + + L FD+G S AL +FISH+H+DHI GL ++ TR
Sbjct: 7 SKALYTTWVYYKPDRLLFDVGEGISAALGNKIYSIEKIFISHSHVDHIAGLWGFINTRNN 66
Query: 81 ---YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
R K TI P K E L + R + + ++ G+ ++ + ++K F
Sbjct: 67 AMGSREKGLTIYYPKGSKNIEEYLNFIQRMNKYLRFKLEFITVEHGDIIPLKNNRYLKIF 126
Query: 138 KTYHVI--QSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS-GTE-ITYTVTTPEVAFTGD 193
KT H +S G+ + +++LK EY L G+EIK+L S G E I T V +GD
Sbjct: 127 KTRHTPGEKSVGFQILENRKRLKSEYQNLSGNEIKELISKMGKENILEKYTKKLVTISGD 186
Query: 194 TM--SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
++ S I+++++ ILV E T++ + + + HT L EI + + + K
Sbjct: 187 SLPVSPDIIEDSD-------ILVHECTFIRE----KDRKLRNHTSLDEIKKLLTQIKPKK 235
Query: 252 ILLIHFSARH 261
++L H S+R+
Sbjct: 236 VILYHISSRY 245
>gi|358380828|gb|EHK18505.1| hypothetical protein TRIVIDRAFT_58477 [Trichoderma virens Gv29-8]
Length = 331
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + PSL+L D G + ++ +F++H H DH P +V
Sbjct: 35 LTGRSRAAWHTSFVIPSLNLLLDAGLVVNNQRPKH-IFLTHGHSDHTLLAPAFVK----- 88
Query: 82 RMKPPTIIVPSCIK-----------------------EDVEQLFEVHRRMDHSE------ 112
R PP I P ++ D+ L + + SE
Sbjct: 89 RDDPPDIFCPMEMRTAFDNFVLAKTILNLGGEIGPEDADIRGLPIDDQVVARSEELGRTP 148
Query: 113 -----LN-HTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
LN H GL G+ +R+ + AF+ H + GYV Q+LK E+ L
Sbjct: 149 SSTAFLNTHFTHGLHPGDSVPLRRAQGITATAFRCDHTVPCLGYVFSKTTQRLKPEFASL 208
Query: 165 PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDST 224
G E++ L+ SGTE+T TTP AF GDT + + E + +++ E +++ +
Sbjct: 209 SGPELQALRRSGTELTAPHTTPIFAFLGDTTTQTLEAEPSWLQEGIPVVITECSFLYEEH 268
Query: 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
Q HT ++ + K+ +L HFS R+ EI + + +P P
Sbjct: 269 EA-QGIKTKHTSWRDLEKVVRKWPRTTFVLTHFSMRYDDAEIAKFFNEMPDP 319
>gi|346972752|gb|EGY16204.1| hypothetical protein VDAG_07368 [Verticillium dahliae VdLs.17]
Length = 341
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 43/293 (14%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G ++ ++ +F++H H DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKERPKH-IFLTHGHSDHVLLSPAFVK--- 87
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEV--------HRRMDHSEL------------------ 113
R PP I P +K + H + D +E
Sbjct: 88 --REDPPDIYCPVEMKRFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 114 --NHTLVGLDV------GEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG 163
+G V G+E +R K + F+ H + GYV + +LK EY
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSATVFQCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 164 LPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS 223
L G+EIK L++SG +IT T+P AF GDT + + E +++ E +++ +
Sbjct: 206 LSGNEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGIPVVITECSFLYEE 265
Query: 224 TTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
QA HT+ ++ ++ +++HFS R+ +++ +P P
Sbjct: 266 HRA-QAEKTKHTYWPDLEVVVRRWPETTFVIMHFSMRYSDEQVSAFFKGLPDP 317
>gi|302405763|ref|XP_003000718.1| RNase Z [Verticillium albo-atrum VaMs.102]
gi|261360675|gb|EEY23103.1| RNase Z [Verticillium albo-atrum VaMs.102]
Length = 329
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 43/283 (15%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G ++ ++ +F++H H DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKERPKH-IFLTHGHSDHVLLSPAFVK--- 87
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEV--------HRRMDHSEL------------------ 113
R PP I P +K+ + H + D +E
Sbjct: 88 --REDPPDIYCPVEMKKFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 114 --NHTLVGLDV------GEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG 163
+G V G+E +R K + F+ H + GYV + +LK EY
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSASVFRCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 164 LPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS 223
L G EIK L++SG +IT T+P AF GDT + + E +++ E +++ +
Sbjct: 206 LAGQEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGIPVVITECSFLYEE 265
Query: 224 TTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
QA HT+ ++ ++ +++HFS R+ +++
Sbjct: 266 HKA-QAEKTKHTYWPDLEAVVRRWPKTTFIIMHFSMRYSDEQV 307
>gi|167521696|ref|XP_001745186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776144|gb|EDQ89764.1| predicted protein [Monosiga brevicollis MX1]
Length = 945
Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats.
Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 19 GYKVEGLSIAGHETCIIFPS----LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMY 74
GY++ S+AG T + L FD+G P A + +FISH H DH+G L +
Sbjct: 100 GYELRVFSVAGVATTVRVTQPERKFSLLFDLGILPLWATNIQHVFISHCHTDHVGSLISH 159
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT-----LVGLDVGEEFCMR 129
L K PT VP+ E ++ L E +D + + +V + G+ M
Sbjct: 160 CRASSL-GGKAPTYYVPAHATELLQDLKEGFDTLDGKSGDDSPPPLKIVPVQPGQAI-MV 217
Query: 130 KDLFVKAFKTYHVIQSQGYVVY-SVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEV 188
K + F T+H + S GY+VY V + EY L I +L+ G P++
Sbjct: 218 KGFKILPFATHHRVPSLGYLVYRQVPPTVPMEYRHLAPRAIAELRQQGA-FGEPQWIPDL 276
Query: 189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
+ GD + D + E D+ RAR+L+ E+TY+ E+ Y E +
Sbjct: 277 CYMGDCIIDSLAVEP--DIARARLLLCEATYLS----------------PELCSYLETAQ 318
Query: 249 NKAILLIHFSAR 260
++ ++L+HFS R
Sbjct: 319 HERVVLMHFSRR 330
>gi|340959649|gb|EGS20830.1| hypothetical protein CTHT_0026680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 359
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 62/299 (20%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + P L+L D G C + L +F++H H DH P +V
Sbjct: 30 LTGRSRAAWHTSFVIPQLNLLLDAGLCVNN-LRPKHIFLTHGHSDHTLLTPAFVK----- 83
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMD-------------------------------- 109
R PP I P+ +K+ ++ + ++
Sbjct: 84 REDPPDIFCPAEMKQVLDNFINANTVLNLGGLWTLGDLETDLSSSDLESTNSSDSSGSGN 143
Query: 110 -------HSELNHTLVG--------LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + H LV L G + AF H + GYV + +
Sbjct: 144 GPGDGLLRTHITHPLVPSQTVTLRRLVGGSGNSAKPSWTATAFACDHTVPCLGYVFHQIT 203
Query: 155 QKLKQEYLGLPGDEIKKLKSS-GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA--- 210
KLK EY L E++ L+ S G++IT V TP AF GDT + + + N +V +
Sbjct: 204 YKLKPEYRSLSPAELRTLRQSIGSDITQPVATPVFAFLGDTTA--LTLDQNPEVQKWLEE 261
Query: 211 --RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
++++ E +++ + QA HT +++ ++ N +L+HFS R+ +EIR
Sbjct: 262 GLKVVITECSFLREEHRA-QAEKTKHTLWADLEPIIRRWPNTTFILMHFSLRYTDEEIR 319
>gi|383787054|ref|YP_005471623.1| beta-lactamase superfamily metal-dependent hydrolase
[Fervidobacterium pennivorans DSM 9078]
gi|383109901|gb|AFG35504.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Fervidobacterium pennivorans DSM 9078]
Length = 278
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 30/271 (11%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATR 78
S A + T I + + FD G + L+ +F++H H+DHI GL + TR
Sbjct: 5 AFSKALYSTWIYYSPERILFDAGEGVATMLTNKIYAVRHVFLTHGHVDHIAGLWSIINTR 64
Query: 79 GLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRK--- 130
R KP T+ PS K +L+ R +SEL L V L GE+ +R
Sbjct: 65 NNAMGDREKPLTVYYPSGNKGI--ELYADFLRKANSELRFKLDFVPLKDGEKVFLRNSTT 122
Query: 131 -DLFVKAFKTYHVIQSQ--GYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTT 185
+ ++K F H GY + V+++LK+EY LP +EI +L KS G+E +T T
Sbjct: 123 TNRYIKPFSVVHTYSETAFGYHLIEVRRRLKEEYRNLPKEEITRLVKSYGSESVTETYEK 182
Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
+ +GDT+ + E DV IL E T++ E + H L E++E +
Sbjct: 183 KILTISGDTI--LLKKE---DVADTEILFHECTFLKK----EDRKFNNHASLDEVIELVK 233
Query: 246 KFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
+ ++L H S+R+ + I + + + P
Sbjct: 234 DANVQTLILYHISSRY-IRSIEKVIKKIQIP 263
>gi|322700389|gb|EFY92144.1| 3'-tRNA processing endoribonuclease [Metarhizium acridum CQMa 102]
Length = 340
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 43/283 (15%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + P L++ D G C ++ ++ +F++H H DH +A +
Sbjct: 45 LTGRSRAAWHTSFVIPQLNVLLDAGLCVNKQRPKH-IFLTHGHADHT-----LLAYAFVK 98
Query: 82 RMKPPTIIVPSCIKE------------DVEQLFEVHR------RMDHSE----------- 112
R PP I P+ +K ++ L EV ++D++
Sbjct: 99 REDPPDIYCPAEMKHIFDNHILSTTMMNLGGLVEVGDAEKQGYKVDNTNGGTDADGRTPQ 158
Query: 113 ----LN-HTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
LN H G+ G+ +R K + AF H + GYV S +L QEY L
Sbjct: 159 ERAFLNTHVTHGVKHGDTVPLRRLKGITATAFSCDHTVPCVGYVFSSTTNRLMQEYKSLA 218
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTT 225
G ++K L+ SG EIT + P AF GDT + E +++ E +++ +
Sbjct: 219 GPQLKDLRQSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGIPVVITECSFLHEDHA 278
Query: 226 VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
QA HT S++ ++ +LIHFS R+ ++ R
Sbjct: 279 A-QADKTKHTKWSDLEPVIRRWPGTTFILIHFSMRYSDRQVCR 320
>gi|456970666|gb|EMG11417.1| beta-lactamase domain protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 104
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
P ++F+GDT +++++ DV + IL +E TY+D+ V QAR++GHTHL EI+
Sbjct: 5 PVISFSGDTKIEYVLEHE--DVANSSILFIECTYIDNERNVAQAREWGHTHLDEILNNLS 62
Query: 246 KFENKAILLIHFSARHKVDEIRRAVD 271
F+N+ I+LIHFS R+ V IR +D
Sbjct: 63 SFKNEKIVLIHFSKRYSVSYIREVLD 88
>gi|322707813|gb|EFY99391.1| RNase Z (ISS) [Metarhizium anisopliae ARSEF 23]
Length = 327
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 51/280 (18%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + P L+L D G C ++ ++ +F++H H DH +A +
Sbjct: 32 LTGRSRAAWHTSFVIPQLNLLLDAGLCVNKQRPKH-IFLTHGHADHT-----LLAFAFVK 85
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVH----------------------RRMDHSE------- 112
R PP + P+ +++ +F+ H ++D +
Sbjct: 86 REDPPDVYCPA----EMKHIFDTHILGTTMMNLGGLVEVGDAEKQGYKVDDTNGETDADG 141
Query: 113 --------LN-HTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEY 161
LN H G+ G+ +R K + AF H + GYV S +LKQEY
Sbjct: 142 RTPQERAFLNTHVTHGVMHGDTVPLRRLKGITATAFNCDHTVPCVGYVFSSTTNRLKQEY 201
Query: 162 LGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVD 221
L G +++ L+ SG EIT + P AF GDT + E +++ E +++
Sbjct: 202 KSLAGPQLRDLRRSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGIPVVITECSFLY 261
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ QA HT S++ + +LIHFS R+
Sbjct: 262 EDHAA-QADKTKHTKWSDLEPVIRSWPGTTFILIHFSMRY 300
>gi|284038686|ref|YP_003388616.1| hypothetical protein Slin_3827 [Spirosoma linguale DSM 74]
gi|283817979|gb|ADB39817.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
Length = 292
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 25/265 (9%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQ-----NFLFISHAHMDHIGGLPMYVA 76
+ G S A T L L D G + L Q + +F+SHA DH+ GL
Sbjct: 5 ITGYSTALFSTWYFVEELRLLLDAGDGIAPTLLQKSRKIDHIFLSHADRDHVTGLLRLNE 64
Query: 77 TRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKA 136
R P + P+ + L ++ D L ++ +RKDLFV++
Sbjct: 65 LNA--RDGFPAVYYPTDAGS-ISALETFSKQFDERVKKTVWHPLGDQQQVQLRKDLFVQS 121
Query: 137 FKTYHVIQSQ-------GYVVYSVKQKLKQEYLGLPGDEIKKLKSS-GTE-ITYTVTTPE 187
+ HV+++Q GY +Y K KLK +++ L G+ +++L + G E +T V T
Sbjct: 122 ARNNHVVKAQLHEVKSLGYQIYQTKNKLKSDFVDLSGEALRQLAETLGRESLTDEVRTNL 181
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS--TTVEQARDYGHTHLSEIVEYAE 245
+A++GDT ++ D+ N +IL+ E+T++ + T+E R+ H+ L E++
Sbjct: 182 LAYSGDTPAENF-DQWN----NTQILIHEATFLTRAELATLETNRN-QHSTLEEVLAAVA 235
Query: 246 KFENKAILLIHFSARHKVDEIRRAV 270
+ ++L HFS+R+ +EI A+
Sbjct: 236 DLNIQTLILGHFSSRYSEEEIDEAI 260
>gi|154249577|ref|YP_001410402.1| beta-lactamase domain-containing protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153513|gb|ABS60745.1| beta-lactamase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 278
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 30/271 (11%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATR 78
S A + T I + + FD G + LS +F++H H+DHI GL + TR
Sbjct: 5 AFSKALYSTWIYYSPERILFDAGEGVATMLSNKIYAVRHIFLTHGHVDHIAGLWSIINTR 64
Query: 79 GLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV--GEEFCMRKD-- 131
R KP T+ P K +E E +R + ++L L+ + V GE +RK
Sbjct: 65 NNAMGDREKPLTVYYPEGNK-GIEFYAEFLKRAN-NDLRFELIFVPVKKGENVFLRKSGS 122
Query: 132 --LFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL--KSSGTEITYTVTT 185
+V+ F+ H + GY V V+++LK+EY LP +EI L K EIT
Sbjct: 123 FIRYVQPFQVNHTYSEVAFGYHVIDVRRRLKEEYRDLPKEEISNLAKKLGSEEITEAYEK 182
Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
+ +GDT+ + E D++ IL E T+++ E + H L +IVE +
Sbjct: 183 KVLTISGDTV--LLKKE---DIMDTEILFHECTFLNR----EDRKFNNHASLDDIVELVK 233
Query: 246 KFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
K ++L H S+R+ V + +A+ + P
Sbjct: 234 DSNVKNLVLYHISSRY-VRGLEKAIKKINIP 263
>gi|157364451|ref|YP_001471218.1| beta-lactamase domain-containing protein [Thermotoga lettingae TMO]
gi|157315055|gb|ABV34154.1| beta-lactamase domain protein [Thermotoga lettingae TMO]
Length = 278
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 124/262 (47%), Gaps = 37/262 (14%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATRGL 80
S A + T + + + FD G S +S ++F++H H+DHI GL V TR
Sbjct: 6 SKALYSTWVYYAPERILFDAGEGVSLTMSNKIYAIRYIFLTHGHIDHISGLWTIVNTRNN 65
Query: 81 Y---RMKPPTIIVP---SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK---- 130
R KP T+ P + I++ + + + + + E NH + + GE+ +R+
Sbjct: 66 SMGDREKPLTVYYPKGNTAIEDWINFIKQANNDL-RFEFNH--IPVSAGEKVFLRQAGNF 122
Query: 131 DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEI----KKLKSSGTEITYTVT 184
+V FK H Q S GY + +++LK+EY LP EI KKL SS IT
Sbjct: 123 ARYVVPFKVKHTSQDMSLGYSIIETRRRLKEEYRNLPEKEILELSKKLGSSN--ITEFYE 180
Query: 185 TPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
+ +GDT F +D N + IL+ E T++ S A H L E+++ A
Sbjct: 181 KKILTISGDT---FGIDPEN--ARDSEILLHECTFLRSSDRKMNA----HASLEEVLDIA 231
Query: 245 EKFENKAILLIHFSARH--KVD 264
+ E K ++L H S+R+ K+D
Sbjct: 232 KSAEVKKLILYHISSRYSGKID 253
>gi|455790700|gb|EMF42552.1| hypothetical protein LEP1GSC067_4934 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456986358|gb|EMG21945.1| hypothetical protein LEP1GSC150_4036 [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 146
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Query: 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIG-RCPSRALSQNFLFISHAHMDHIGGLPM 73
Q + Y+ EG+S G T + PSL L FDIG + P+R N L ++H+H+DH GLP
Sbjct: 5 FQHKQYQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLL-LTHSHLDHSCGLPY 63
Query: 74 YVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133
Y++ R L ++K P I VP+ +KE ++++ +++ +++ + L + G++ + + F
Sbjct: 64 YISQRSLRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHF 123
Query: 134 VKAFKTY 140
K +
Sbjct: 124 FLLIKLF 130
>gi|448444601|ref|ZP_21589891.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
gi|445686014|gb|ELZ38355.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
Length = 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 115/265 (43%), Gaps = 52/265 (19%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF+SH H DH+ G+P V T G R P TI P
Sbjct: 33 LLFDCGEGTQRGMMRHGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDREDPLTIHCPP 92
Query: 93 CIKEDVEQLFEVHR-------RMDHSELNHTLVGLDV-GEEFCMRKDLFVKAFKTYHVIQ 144
+D+ L VH R+ E++ V LD G E V+AF+T H
Sbjct: 93 GTGDDLHDL--VHAVGHDPAFRIRIDEVSPGGVALDADGYE--------VRAFETVHRTV 142
Query: 145 SQGYVVYSVKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPEVA 189
SQGYV+ + + K E LG+P G+ ++ S E V P
Sbjct: 143 SQGYVLEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGSTVEPDQVVGPPRPG 202
Query: 190 ----FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
+T DT EA D A +LV ++T+ DD ++ARD H+ E AE
Sbjct: 203 RKFVYTADTRPRENTVEAAAD---ADLLVHDATFADD--MADRARDTAHSTGREAGSIAE 257
Query: 246 KFENKAILLIHFSARHKVD--EIRR 268
+ + K + L+H S+R+ D IRR
Sbjct: 258 RADAKRLALVHISSRYAADASPIRR 282
>gi|448476244|ref|ZP_21603408.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
gi|445815793|gb|EMA65712.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
Length = 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 40/254 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF+SH H DH+ G+P V T G R +P TI P
Sbjct: 33 LLFDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY 151
+D+ +L + H H + E + D + V+AF+T H +SQGYV+
Sbjct: 93 GTADDLHELVHA---VGHDPAFHVRIEPVAPGEVALDADGYAVRAFETTHRTKSQGYVLD 149
Query: 152 SVKQ-----KLKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFT 191
+ + K E LG+P G + +L +G + TV PE + +T
Sbjct: 150 EADRPGRFDRPKAEELGVPVGPKFGRLH-AGEPVEAEDGTVVEPEQVVGPARPGRKLVYT 208
Query: 192 GDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT + ++V A +LV ++T+ DD ++ARD H+ E E A + + K
Sbjct: 209 ADTRP----RQRTVEVAENADLLVHDATFADD--MADRARDTAHSTGREAGEIAARADAK 262
Query: 251 AILLIHFSARHKVD 264
+ L+H S+R+ D
Sbjct: 263 RLALVHVSSRYAGD 276
>gi|374857157|dbj|BAL60010.1| ribonuclease Z [uncultured candidate division OP1 bacterium]
Length = 283
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 25/253 (9%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATR-- 78
S A + + + + LAFD G S L +F+SH H DHI GL + R
Sbjct: 7 SKALYSSWVYYSPDRLAFDAGEGISTILGNKVFAIERIFLSHGHADHITGLIGLINIRNS 66
Query: 79 GLYRM-KPPTIIVPS---CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
G+ KP TI P + E + + + +RR+ + L D E F + + +V
Sbjct: 67 GMGDTEKPLTIYYPKENWRVLELISYIRKTNRRLKYPLEWVPLTIGDRVEVFSGQCNRYV 126
Query: 135 KAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGT--EITYTVTTPEVAF 190
+AFKT H S GY + + +L + Y LP +EI KL +G +IT V +
Sbjct: 127 EAFKTVHSDNEVSLGYAIVEERTRLAEPYRDLPQEEILKLVRAGQRDQITERYLKKLVCY 186
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE-N 249
GD+++ +D A DV IL+ + T++ T E+ DY H LSE +E A + +
Sbjct: 187 GGDSIA---LDPA--DVAGTDILLHDCTFL----TEEEREDYKHATLSEALEVALRAQVQ 237
Query: 250 KAILLIHFSARHK 262
+A++ +H S+R+K
Sbjct: 238 EALIALHISSRYK 250
>gi|156338764|ref|XP_001620031.1| hypothetical protein NEMVEDRAFT_v1g223552 [Nematostella vectensis]
gi|156204276|gb|EDO27931.1| predicted protein [Nematostella vectensis]
Length = 607
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FISHA DH+ GL Y L+ PTI P + L ++ D +
Sbjct: 213 VFISHADRDHLTGLLQY---NQLFSHIGPTIYYPKG-SQSFPFLEAFTKKFDPHIQGTSW 268
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQG------YVVYSVKQKLKQEYLGLPGDEIKK 171
+D G+ +++ + V++ + HV ++G Y V+ K+KLK E+LG+P + IKK
Sbjct: 269 EPIDTGQYIAIKERISVESLENEHVYTTEGIIKSLSYKVWETKKKLKTEFLGMPSEAIKK 328
Query: 172 LKSSGTE--ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQA 229
++ E + T ++++GDT +VD + +++L+ E+T++ T +
Sbjct: 329 IRIEKGESFLMEEQKTNLLSYSGDTP---VVDYTRFE--GSKVLIHEATFLTKEETQTKN 383
Query: 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPA 275
H+ L E+ E + ++L HFS+R+ +EI + + + A
Sbjct: 384 DKNRHSSLEEVFEMVANCNIEQLILGHFSSRYYNEEIDKKIKELIA 429
>gi|448466727|ref|ZP_21599232.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
gi|445813587|gb|EMA63564.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
Length = 310
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 112/256 (43%), Gaps = 44/256 (17%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF+SH H DH+ G+P V T G R +P T+ P
Sbjct: 33 LLFDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRTEPLTVHCPP 92
Query: 93 CIKEDVEQLFEVHR-------RMDHSELNHTLVGLDV-GEEFCMRKDLFVKAFKTYHVIQ 144
+D+ L VH R+ E+ V LD G E V+AF+T H +
Sbjct: 93 GTADDLRDL--VHAVGHDPAFRIRIDEVAPGAVALDADGYE--------VRAFETTHRTK 142
Query: 145 SQGYVVYSVKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPEVA 189
SQGY + + + K E LG+P G+ ++ + E V P
Sbjct: 143 SQGYALEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGTVVEPEQVVGPPRPG 202
Query: 190 FTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
T +D E ++V R A +LV ++T+ DD ++ARD H+ E AE+
Sbjct: 203 RTLVYTADTRPRERTVEVARDADLLVHDATFADD--MADRARDTAHSTGREAGSIAERAG 260
Query: 249 NKAILLIHFSARHKVD 264
K + L+H S+R+ D
Sbjct: 261 AKRLALVHVSSRYAAD 276
>gi|404418720|ref|ZP_11000487.1| ribonuclease Z [Staphylococcus arlettae CVD059]
gi|403489313|gb|EJY94891.1| ribonuclease Z [Staphylococcus arlettae CVD059]
Length = 306
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P IK VE + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTIIGPKGIKSFVETTL----ALSESRLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
TL +++ F + + F V A H I S GY + + + Q LK +GL PG
Sbjct: 115 TLTFIELDNHFAYQHNGFTVTADILNHGITSFGYRIEAPQTSGKIDVQALKS--IGLEPG 172
Query: 167 DEIKKLKSSGT----EITYT--------VTTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K T ++ Y P VA GDT +E I L A ++V
Sbjct: 173 PKYQEVKEHETFEFEDVIYNSCDFKGAPTPGPIVAIFGDTKP--CANEYQI-ALNADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
ESTY++ T+ A +Y H+H+ ++ +K K L+ H S R+ ++E+
Sbjct: 230 HESTYIEGDKTL--ANNYHHSHIEDVFALMQKANVKHSLVTHISNRYTLEEVE 280
>gi|392967329|ref|ZP_10332747.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
gi|387844126|emb|CCH54795.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
Length = 292
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 124/267 (46%), Gaps = 29/267 (10%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQ-----NFLFISHAHMDHIGGLPMYVA 76
+ G S A T L L FD G + +L Q + +F+SHA DH+ GL
Sbjct: 5 ITGYSTALFATWYFIEELRLLFDAGDGVAASLLQKSRKIDHIFLSHADRDHVTGLLRLNE 64
Query: 77 TRGLYRMKPPTIIVPS-CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVK 135
R P + P+ + ++F +++D + E+ ++ D FV+
Sbjct: 65 LNA--REGLPQLFFPADSMSFPALEVFS--KQLDERVKQTRWTPIRADEQIEIQNDTFVE 120
Query: 136 AFKTYHVIQSQ-------GYVVYSVKQKLKQEYLGLPGDEIKKLKSS-GTE-ITYTVTTP 186
+ + H +++Q GY VY V+ KLK + L LPG+ +++L + G E +TY V T
Sbjct: 121 SVRNNHAVRAQPHEIKSLGYQVYQVRHKLKPDLLSLPGETLRQLATDIGKENMTYEVRTN 180
Query: 187 EVAFTGDTMSDFIVDEANIDVL-RARILVMESTYVDDS--TTVEQARDYGHTHLSEIVEY 243
+A++GDT + N D IL+ E+T++ + ++ R+ H+ L +++
Sbjct: 181 LLAYSGDTPIE------NFDRWDNTGILIHEATFLTNEEFAGLDTNRNR-HSTLESVLQI 233
Query: 244 AEKFENKAILLIHFSARHKVDEIRRAV 270
++L HFS+R+ EI A+
Sbjct: 234 VADLHIDTLILGHFSSRYSHAEIDEAI 260
>gi|222478515|ref|YP_002564752.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
gi|254808639|sp|B9LQT0.1|RNZ_HALLT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222451417|gb|ACM55682.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
Length = 310
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF+SH H DH+ G+P V T G R +P TI P
Sbjct: 33 LLFDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
++D+ L VH + + GE V+AF+T H +SQGYV+
Sbjct: 93 GTEDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPEVA----FTGD 193
+ + K E LG+P G+ ++ S E V P +T D
Sbjct: 151 DDRPGRFDRPKAEELGVPVGPKFGRLHEGEPVEAEDGSIVEPDQVVGPPRPGRKFVYTAD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T E + V A +LV ++T+ DD ++ARD H+ E AE+ K +
Sbjct: 211 TRP----REGTVAVAEDADLLVHDATFADDME--DRARDTAHSTGREAGSVAERAGAKRL 264
Query: 253 LLIHFSARHKVD--EIRR 268
L+H S+R+ D IRR
Sbjct: 265 ALVHISSRYAADASPIRR 282
>gi|256419268|ref|YP_003119921.1| hypothetical protein Cpin_0220 [Chitinophaga pinensis DSM 2588]
gi|256034176|gb|ACU57720.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
Length = 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 59 FISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
FISHA DH+ GL + R P I P + + E R D
Sbjct: 47 FISHADRDHLTGLLQFNQLNA--REGYPVICYPRDSRS-FPAMHEFFARFDPHTTGTVWQ 103
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHV------IQSQGYVVYSVKQKLKQEYLGLPGDEIKKL 172
+ G+E ++ D+ V + HV +S GY +Y K+KL+ E GL G+EI+K+
Sbjct: 104 PVTAGDEIRVKDDILVIPVRNEHVPVPPAITRSLGYKIYQTKRKLRPELAGLSGEEIRKI 163
Query: 173 K-SSGTE-ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVE-QA 229
G E T V T ++++GDT D D D +IL+ E+T+++ ++ A
Sbjct: 164 GIEKGKEATTMEVRTNILSYSGDTPVD---DLHKWD--DTKILIHEATFLEREEEIKVHA 218
Query: 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
H+ L E++E + ++L HFS+R+ +I A+
Sbjct: 219 HKNKHSRLDEVIEMVSASNIETLILGHFSSRYNAAQIDDAI 259
>gi|414160873|ref|ZP_11417136.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876552|gb|EKS24450.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
Length = 306
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 36/233 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P IK VE + S+LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTIIGPRGIKSYVEMTLQASL----SKLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
+ +++ E+ + F + A+ H + S GY + + K + L PG +
Sbjct: 115 PITFIEIDEQLHYHHEGFTISAYALNHGVPSFGYRIEAPTTPGKIDVAALKAIGMEPGPK 174
Query: 169 IKKLKSSGTEI----TYTVTT--------PEVAFTGDTM---SDFIVDEANIDVLRARIL 213
+++K T + TY + P++A GDTM +++++ E ++DV+
Sbjct: 175 YQEVKEQNTFVFNNQTYDSSQFKGSDKIGPKIAIFGDTMPCKNEYLLAE-DVDVI----- 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
V E+TY+D T+ A + H+H+S++++ E K LL H S R+ + +I
Sbjct: 229 VHEATYIDGDRTL--ADSHHHSHISDVLKLLEDSHAKQALLNHISNRYNLSDI 279
>gi|73662558|ref|YP_301339.1| hypothetical protein SSP1249 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576116|ref|ZP_13140262.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|123642642|sp|Q49XV1.1|RNZ_STAS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|72495073|dbj|BAE18394.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325178|gb|EHY92310.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 306
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 41/246 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P IK +E R+ S+LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTLIGPKGIKAYIETTL----RLSESKLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
+ +++ + + F V+A H I S GY + + K + L PG +
Sbjct: 115 PITYIEIENHLSYQNNGFNVEAHMLNHGIPSFGYRIEAPYTSGKIDVSALKEIGLEPGPK 174
Query: 169 IKKLKSSGT----EITYT--------VTTPEVAFTGDTM----SDFIVDEANIDVLRARI 212
+ +K++ T I Y V P +A GDTM + I D AN +
Sbjct: 175 YQDVKNNETFEYNGIIYNSKDFKGDAVKGPVIAIFGDTMPCQNEEIIADHAN-------V 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE---IRRA 269
+V ESTY++ ++ A +Y H+H+ ++ E L+ H S R+ ++E I ++
Sbjct: 228 MVHESTYIEGDKSL--ANNYHHSHIEDVFTLIENAHVDYSLITHMSNRYTIEEVETISKS 285
Query: 270 VDAVPA 275
+ ++P
Sbjct: 286 LKSLPT 291
>gi|358397598|gb|EHK46966.1| hypothetical protein TRIATDRAFT_239349 [Trichoderma atroviride IMI
206040]
Length = 330
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 44/284 (15%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY 81
+ G S A T + PSL+L D G + ++ +F++H H DH P +V
Sbjct: 34 LTGRSRAAWHTSFVIPSLNLLLDAGLVVNSQRPKH-IFLTHGHSDHTLLAPAFVK----- 87
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-EL---NHTLVGLDVGEEFCMRKD------ 131
R PP + P+ +++ ++ ++ E+ + VGL V + R +
Sbjct: 88 RDDPPDVFCPAEMRDALDDFVLAKTLLNRGGEIGVEDAAAVGLAVDDAVAARSEALGRSP 147
Query: 132 ---------------------------LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
+ AF+ +H + GYV Q+L+ E L
Sbjct: 148 SATAFLGTHRTHALQPGDVVPLRRAPGITATAFRCHHQVPCLGYVFSKTTQRLRPELASL 207
Query: 165 PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDST 224
G E++ L+ +G ++T T P AF GDT + + + +++ E +++ +
Sbjct: 208 AGPELQALRKAGEQLTAPHTAPIFAFMGDTTAATLAEAPAWLREGIPVVIHECSFLYEEH 267
Query: 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ A+ HT S++ ++ +L HFS R+ E+ R
Sbjct: 268 RAQAAKT-KHTLWSDLEPVIRRWPRTTFVLTHFSMRYDDAEVAR 310
>gi|224476616|ref|YP_002634222.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254808665|sp|B9DNT1.1|RNZ_STACT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222421223|emb|CAL28037.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 306
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 30/232 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
N +FI+H H DHI GLP + +R KP TI+ P IK VE + S L
Sbjct: 57 NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQASL----SRL 112
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PG 166
N+ + +++ ++ + F V A+ H + S GY + + K + L PG
Sbjct: 113 NYPVTFIEIDDQLHYHHEGFTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPG 172
Query: 167 DEIKKLKSSGTEI----TYTVTT--------PEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K+S + I Y + P++A GDTM +E + A +LV
Sbjct: 173 PKYQEVKNSDSFIFNDKVYQSSDFKGEEKVGPKIAIFGDTMP--CENELKL-ADNADLLV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
E+TY+D ++ A + H+H+++++ E +K LL H S R+ + +I
Sbjct: 230 HEATYIDGDRSL--ADSHHHSHINDVLHLLEATNSKQALLNHISNRYNLSDI 279
>gi|332796924|ref|YP_004458424.1| ribonuclease Z [Acidianus hospitalis W1]
gi|332694659|gb|AEE94126.1| ribonuclease Z [Acidianus hospitalis W1]
Length = 288
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 53 LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSE 112
++ N + I+H H DH+ GLP + T G+Y K I+ +K+ + ++FE + E
Sbjct: 50 MAINLIAITHLHADHVLGLPSLIQTMGMYSRKEKLYIIGD-VKDLLNKVFE----ETYFE 104
Query: 113 LNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV-KQKLKQEYLGLPGDE--- 168
+ +D E+ +L + FKT HV++SQGY++ K+ + E L G +
Sbjct: 105 PPFKIEYVDSYED----NELKITPFKTCHVVKSQGYLIEEKDKKNIDIEKLTKEGIKDWR 160
Query: 169 -IKKLKSSGTEIT----------YTVTTP--EVAFTGDTMSDFIVDEANIDVLRARILVM 215
I++LK +G E+ Y +T +A+TGDT I D V +L+
Sbjct: 161 IIRQLK-AGKEVIFNGRKLYPEDYLITKKGIRIAYTGDTA---ICDSVINSVKGVDLLIH 216
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ST++DD A++YGH+ +++ A++ K + L+H S R+K
Sbjct: 217 DSTFLDDI----NAKEYGHSTVTDAATVAKEAGVKRLALVHISGRYK 259
>gi|302347992|ref|YP_003815630.1| ribonuclease Z [Acidilobus saccharovorans 345-15]
gi|302328404|gb|ADL18599.1| Ribonuclease Z [Acidilobus saccharovorans 345-15]
Length = 293
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 15/213 (7%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+F+ ++H H DHI GLP + T L R TII P + E + +L ++ D +N
Sbjct: 59 DFIVLTHGHGDHINGLPGLLGTMQLSGRKSRLTIIAPKYLAEPIRELINANKFEDQFPVN 118
Query: 115 HTLVGLDVGE---EFCMRKDLFVKAFKTYHVIQSQGY-VVYSVKQKLKQEYLGLPGDEIK 170
V D G R L + F+ H I++ GY + + + ++ + P K
Sbjct: 119 VIDVTGDEGSLTLSSWGRDRLVLSWFRACHSIEAYGYSLTWELGPRIAEPV--EPSQARK 176
Query: 171 KLKSSGTEITYTVTTPEVAFTGDTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQA 229
L+ G+ +T + + ++++TGDT D +V A+ A +L+ EST+ DS+ ++A
Sbjct: 177 LLEEGGSGLT-SPRSFKLSYTGDTSPCDSVVKGAS----GANVLIHESTF--DSSMKDEA 229
Query: 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
YGH+ E A K ++L H S R++
Sbjct: 230 SKYGHSTSVGAAEDAVKANVGKLILSHISTRYE 262
>gi|242373804|ref|ZP_04819378.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
gi|242348541|gb|EES40143.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
Length = 306
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 34/239 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P I+ +E ++ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPKGIQNYIETSL----KLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ ++F + F VKA H I S GY + + + LK +GL PG
Sbjct: 115 PITYIEINQQFTYHHEGFTVKAELLNHGITSYGYRIEAPTTPGTIDVEALKA--IGLNPG 172
Query: 167 DEIKKLKSSGT----EITYTVTT--------PEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K T + Y + P VA GDT D I A +++
Sbjct: 173 PKYQEVKVQDTFEHNGLMYQSSDFKGAAKPGPVVAIFGDTKP---CDNEYILAQDADVMI 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
ESTY++ T+ A +Y H+H+ ++ + + + L+ H S R+ ++E+ +A+
Sbjct: 230 HESTYIEGEKTL--ANNYHHSHIDDVFDLIKNANVRKSLITHISNRYNIEEVESIYEAL 286
>gi|375147746|ref|YP_005010187.1| RNAse Z [Niastella koreensis GR20-10]
gi|361061792|gb|AEW00784.1| RNAse Z [Niastella koreensis GR20-10]
Length = 293
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 22/261 (8%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMY 74
Y + G S A T L L FD G L Q +FISHA DH+ GL +
Sbjct: 3 YNITGYSTALFSTWYFIDELRLLFDAGDGLMANLLQKSRKIEHVFISHADRDHVTGLLQF 62
Query: 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
R P I P L + + D + + +RKD+FV
Sbjct: 63 NQLNS--RPGFPVIYYPKD-SGSFPALSDFSVKFDPHVTGTVWTPISPENDVPIRKDMFV 119
Query: 135 KAFKTYHVIQSQG-----YVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTEITYT-VTTPE 187
++ H Q G + V K KL E + LP +IK++ + G T+T V T
Sbjct: 120 RSIPNTHAAQKGGIRSLSFKVIQTKMKLNPELVKLPAADIKRIIEQKGKARTHTEVQTNL 179
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYV--DDSTTVEQARDYGHTHLSEIVEYAE 245
++++GDT + + N ++IL+ E+T++ DD H++L E++E
Sbjct: 180 ISYSGDTPVEDLGRWEN-----SQILIHEATFLRDDDEEKELGGHSAKHSYLEEVMEMVS 234
Query: 246 KFENKAILLIHFSARHKVDEI 266
+ ++L HFS+R+ ++I
Sbjct: 235 GSNIEQLILGHFSSRYSAEQI 255
>gi|338730980|ref|YP_004660372.1| RNAse Z [Thermotoga thermarum DSM 5069]
gi|335365331|gb|AEH51276.1| RNAse Z [Thermotoga thermarum DSM 5069]
Length = 279
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 25/252 (9%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQ-----NFLFISHAHMDHIGGLPMYVATRGL 80
S A + T + + + FD G S +S ++F++H H+DHI GL V TR
Sbjct: 7 SKALYSTWVYYAPERILFDAGEGVSLTMSNRIYAVKYVFLTHGHIDHIAGLWSIVNTRNN 66
Query: 81 Y---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK----DLF 133
R KP + P K E L + + D + GE +R+ +
Sbjct: 67 SMGDREKPLYVFYPKGNKAIEEWLQFIRKTSDDLRFELIDQPVSAGERIFLRQAGGFSRY 126
Query: 134 VKAFKTYHVIQSQ--GYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTPEVA 189
V FK H GY V ++KLK EY LP EI KL ++ G++ IT +
Sbjct: 127 VVPFKVRHTGSDPCFGYSVIETRKKLKDEYKNLPESEIAKLARTLGSDAITEIYEKKLLT 186
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+GDT + +D D + ILV + T++ V + H + E++E A++
Sbjct: 187 ISGDT---YGIDPQ--DAKDSEILVHDCTFL----KVSDRKMNAHASIEEVIEIAKQANV 237
Query: 250 KAILLIHFSARH 261
+ ++L H S R+
Sbjct: 238 EKLILYHISTRY 249
>gi|124003210|ref|ZP_01688060.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123991308|gb|EAY30739.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 304
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 37/275 (13%)
Query: 16 QLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGG 70
L + G S A T L L FD G + L Q + ISHA DH+ G
Sbjct: 12 NLMNLTITGYSTALFATWYFVEELGLLFDAGEGITANLLQKSRKIKHVLISHADRDHLTG 71
Query: 71 LPMYV---ATRGLYRMKPPTI-IVPSCIKEDVEQLFEVHRR--MDHSELNHTLVGLDVGE 124
L + A GL+ P P+ D Q F+ H + + H + + + +
Sbjct: 72 LLQFNQLNARSGLHIHYPADCGSFPAL--ADFCQKFDPHIQGAIWHPTTSQSRIAI---- 125
Query: 125 EFCMRKDLFVKAFKTYHVIQSQG------YVVYSVKQKLKQEYLGLPGDEIKKLKS-SGT 177
+ D V+ + HV ++G Y V +K+KLK E L G EIKK+K G
Sbjct: 126 ----KDDFVVEPVQNGHVKAAEGVTKSLSYKVMQIKRKLKPELANLSGLEIKKIKDEKGI 181
Query: 178 EITYT-VTTPEVAFTGDT-MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
E T + T ++++GDT + D+ + N ++IL+ E+T++D ++ R + H+
Sbjct: 182 EATTNEIRTNVISYSGDTPVEDY--ERFN----HSKILIHEATFIDQVANNKENR-HPHS 234
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
+L E++E + + ++L HFS+R+ + I A+
Sbjct: 235 YLEEVIEMVASIDVEQLILGHFSSRYSSEHIDTAI 269
>gi|146304551|ref|YP_001191867.1| ribonuclease Z [Metallosphaera sedula DSM 5348]
gi|172046934|sp|A4YHP1.1|RNZ_METS5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145702801|gb|ABP95943.1| RNAse Z [Metallosphaera sedula DSM 5348]
Length = 291
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 64/282 (22%)
Query: 11 SGRGMQLQGYKVEGLSI-----AGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHM 65
S RG+ + EGLSI G + +I SL++ ++ N + I+H H
Sbjct: 15 SRRGLPAYLVRREGLSILMDCGEGTQITMIRNSLNI-----------MNVNVIAITHLHA 63
Query: 66 DHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE 124
DH+ GLP + T G+Y R + I+ P +K+ + + FE T +
Sbjct: 64 DHVLGLPSLIQTMGMYDRKERLYILGPEGLKDLLTETFE-----------RTYFSPNFPI 112
Query: 125 EFCM---RKDLFVKAFKTYHVIQSQGYVVYSV------KQKLKQEYLGLPGDEIKKLKSS 175
EF + + V+ F+T HV+ SQGY+V ++L++E G+ + ++
Sbjct: 113 EFVSSYESQGIRVRPFRTCHVVPSQGYLVEEKDTANLDAERLRRE--GVTDWRVMRMLKE 170
Query: 176 GTEITY--TVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS 223
G E+ + V PE +A+TGDT E I+ ++ L++
Sbjct: 171 GKEVPWGDRVLKPEDYLIVKRGIRIAYTGDTRP----CETVINSVKGVDLLLH------D 220
Query: 224 TTVEQ---ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T EQ A +YGH+ +E A + E K + LIH SAR++
Sbjct: 221 STFEQGIDASEYGHSTSTEAATVAREAEVKRLALIHISARYR 262
>gi|223995477|ref|XP_002287412.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976528|gb|EED94855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 619
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 128/293 (43%), Gaps = 45/293 (15%)
Query: 9 EKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHI 68
EK + Q Q + GL + + P L +A D G S +L + ++H H DHI
Sbjct: 318 EKRKKSKQSQTISLIGLGRSADASAYFLPELGIALDAGLHVS-SLQPKTVLLTHGHRDHI 376
Query: 69 GGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT------------ 116
G LP++ + L I+VP I++ V + ++++ ++ T
Sbjct: 377 GALPVHASHDSL-------ILVPEPIQKLVHKFLVAEAQLNYGDVTQTEEETLEALGGFN 429
Query: 117 LVGLDVGEEFCMRKD--------LFVKAFKTYHV--IQSQGYVVYSVKQKLKQEYLGLPG 166
+G+ G + + KD L ++ F H + + Y V+ KQ+LK+EY +
Sbjct: 430 TMGVKDGTKIMLPKDKYTGSPTPLGIQVFAAPHKEGVPACSYGVFRRKQRLKKEYQSMSK 489
Query: 167 DE----IKKLKSSG-----TEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
E ++ + +G T IT + + +TGDT + + + + ++ E
Sbjct: 490 SELGAVLRTKRETGKSQEDTSITESYDEGVLFYTGDTTISLLRERWREILPNYKYIIHEV 549
Query: 218 TYVDDSTT----VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
T++ ++ +A+ GHTH S++ + F + + +H+S R+ +E+
Sbjct: 550 TFLGPPSSELDVSSEAK--GHTHYSQLHPWICAFADTTFICVHWSLRYGREEV 600
>gi|170287870|ref|YP_001738108.1| ribonuclease Z [Thermotoga sp. RQ2]
gi|170175373|gb|ACB08425.1| ribonuclease Z [Thermotoga sp. RQ2]
Length = 280
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 27/255 (10%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATR 78
G S A T I + + FD G S L ++F++H H+DHI GL V R
Sbjct: 5 GFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
Query: 79 --GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMRK---- 130
G+ R KP + P + VE+ E +R + + + L GE +R
Sbjct: 65 NNGMGDREKPLDVFYPEGNRA-VEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGF 123
Query: 131 DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTP 186
+V+ F+T HV S GY ++ V++KLK+E+ GL EI +L K G + +T
Sbjct: 124 KRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKK 183
Query: 187 EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
+ +GD+++ +D I +L+ E T++D R H + E++E +
Sbjct: 184 VLTISGDSLA---LDPEEIR--GTELLIHECTFLD----ARDRRYKNHAAIDEVMESVKA 234
Query: 247 FENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 235 AGVKKVILYHISTRY 249
>gi|15643627|ref|NP_228673.1| hypothetical protein TM0864 [Thermotoga maritima MSB8]
gi|403252604|ref|ZP_10918913.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
gi|418044966|ref|ZP_12683062.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|61680268|pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|61680269|pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|158428284|pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
gi|158428285|pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
gi|4981399|gb|AAD35946.1|AE001753_2 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678048|gb|EHA61195.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|402812094|gb|EJX26574.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
Length = 280
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 27/255 (10%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATR 78
G S A T I + + FD G S L ++F++H H+DHI GL V R
Sbjct: 5 GFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
Query: 79 --GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMRK---- 130
G+ R KP + P + VE+ E +R + + + L GE +R
Sbjct: 65 NNGMGDREKPLDVFYPEGNRA-VEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGF 123
Query: 131 DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTP 186
+V+ F+T HV S GY ++ V++KLK+E+ GL EI +L K G + +T
Sbjct: 124 KRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKK 183
Query: 187 EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
+ +GD+++ +D I +L+ E T++D R H + E++E +
Sbjct: 184 VLTISGDSLA---LDPEEIR--GTELLIHECTFLD----ARDRRYKNHAAIDEVMESVKA 234
Query: 247 FENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 235 AGVKKVILYHISTRY 249
>gi|448494708|ref|ZP_21609523.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
gi|445688931|gb|ELZ41177.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
Length = 309
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 38/256 (14%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F+SH H DH+ G+P + T G R P T+ P
Sbjct: 35 FDCGEGTQREMMRSGTGFGVDRVFVSHLHGDHVLGIPGLIQTLGFNDRTDPLTVHCPPGT 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + L VH + ++ GE + V+AF+T H SQGYV+
Sbjct: 95 DDHLRDL--VHAVGHDPAFPVRIEPVEPGEVAYETDEYEVRAFETEHRTVSQGYVLAEDD 152
Query: 155 Q-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTM 195
+ + K E LG+P G+ ++ + E V P ++A+T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLAYTADTR 212
Query: 196 SDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
EA ++ A +L+ ++T+ DD ++ARD H+ E A++ + K + L
Sbjct: 213 P----REATVEAAENADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRLAL 266
Query: 255 IHFSARHKVD--EIRR 268
+H S+R+ D IRR
Sbjct: 267 VHISSRYAADARPIRR 282
>gi|219114498|ref|XP_002176419.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402665|gb|EEC42655.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 357
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 110/274 (40%), Gaps = 35/274 (12%)
Query: 18 QGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
Q + G S AG T P L +D G + + + +FI+H H DH+ LP Y+
Sbjct: 19 QALTLVGRSWAGDGTSCFVPELHCLWDCGAVVT-PRTPHAIFITHTHADHVQMLP-YLLH 76
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHR----------------------RMDHSELNH 115
R +P + +P+ + H+ +M +S +
Sbjct: 77 RATVTDQPIPLYLPAAFVSRLRDYLHAHQHLVQSGGDDDDDNDTDYTDTDTKMSYSRPLY 136
Query: 116 ---TLVGLDVGEEFCM-----RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGD 167
TLV + G+E + R L V+ +H I GY + + L+ EY G
Sbjct: 137 ERCTLVPVQPGDELTVRIPARRDPLLVRVVACHHRIDCVGYSCWEQQTTLRPEYRGQDVA 196
Query: 168 EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVE 227
++K + + + T P F GDT A + + + ++V+E T++D++ TV
Sbjct: 197 ALRK-QMAADALFRTTRRPLFCFLGDTTHRVWTQHAEL-LQQHHVIVVECTFLDNA-TVN 253
Query: 228 QARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+A H H E+ N +L+H S R+
Sbjct: 254 KAVATRHMHWKELQPIVNAHPNVWFVLLHGSLRY 287
>gi|389644470|ref|XP_003719867.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|351639636|gb|EHA47500.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|440470028|gb|ELQ39117.1| hypothetical protein OOU_Y34scaffold00514g34 [Magnaporthe oryzae
Y34]
gi|440489500|gb|ELQ69147.1| hypothetical protein OOW_P131scaffold00186g4 [Magnaporthe oryzae
P131]
Length = 381
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 114 NHTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK 171
H + GL GE +R+ AF H + GYV ++L+ EY LPG ++K+
Sbjct: 193 THVIHGLTDGETIPLRRAQTFTATAFACDHTVPCLGYVFGLNSRRLRPEYRDLPGAKLKE 252
Query: 172 LKSS-GTE-ITYTVTTPEVAFTGDTMS-------DFIVDEANIDVLRARILVMESTYVDD 222
L+ + G E IT TP AF GDT + D++ D + + L E
Sbjct: 253 LRQAQGAEAITAPHLTPLFAFLGDTTAATLSVGPDWLQDGIPVVITECSFLFEEHR---- 308
Query: 223 STTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAG-RV 281
QA HT +++ +F + +L+HFS R+ D +RR +P P A V
Sbjct: 309 ----AQAEKTKHTLWADLEPVVRRFPHTTFVLVHFSMRYSEDSVRRFFAELPDPPANIVV 364
Query: 282 FALTEG 287
+A EG
Sbjct: 365 WADGEG 370
>gi|148269208|ref|YP_001243668.1| ribonuclease Z [Thermotoga petrophila RKU-1]
gi|281411506|ref|YP_003345585.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
gi|147734752|gb|ABQ46092.1| RNAse Z [Thermotoga petrophila RKU-1]
gi|281372609|gb|ADA66171.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
Length = 280
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 27/255 (10%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATR 78
G S A T I + + FD G S L ++F++H H+DHI GL V R
Sbjct: 5 GFSKALFSTWIYYSPERILFDAGEGVSTILGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
Query: 79 --GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMRK---- 130
G+ R KP + P + VE+ E +R + + + L GE+ +R
Sbjct: 65 NNGMGDREKPLDVFYPRGNRA-VEEYTEFIKRANPDLRFSFNVHPLKEGEKVFLRDAGGF 123
Query: 131 DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTP 186
+V+ F+T HV S GY ++ V++KLK+E+ GL EI +L K G + +T
Sbjct: 124 KRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKK 183
Query: 187 EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
+ +GD+++ +D I +L+ E T++D R H + E++E +
Sbjct: 184 VLTISGDSLA---LDPEEIR--GTELLIHECTFLD----ARDRRYKNHAAIDEVMESVKA 234
Query: 247 FENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 235 AGVKKVILYHISTRY 249
>gi|448482783|ref|ZP_21605554.1| ribonuclease Z [Halorubrum arcis JCM 13916]
gi|445821069|gb|EMA70865.1| ribonuclease Z [Halorubrum arcis JCM 13916]
Length = 310
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F+SH H DH+ G+P V T G R P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + L VH + + + GE + V+AF+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHNPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 155 Q-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTM 195
+ + K E LG+P G+ ++ + E V P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADTR 212
Query: 196 SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
EA D A +L+ ++T+ DD ++ARD H+ E A++ + K + L+
Sbjct: 213 PREATVEAAED---ADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRLALV 267
Query: 256 HFSARHKVD--EIRR 268
H S+R+ D IRR
Sbjct: 268 HISSRYAADARPIRR 282
>gi|354609683|ref|ZP_09027639.1| Ribonuclease Z [Halobacterium sp. DL1]
gi|353194503|gb|EHB60005.1| Ribonuclease Z [Halobacterium sp. DL1]
Length = 309
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 123/277 (44%), Gaps = 43/277 (15%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F++H H DH+ GLP V T R +P TI VP +
Sbjct: 35 FDAGEATQRQMMRYGTGFDVSDVFVTHVHGDHVLGLPGLVQTWDFNDRQEPLTIHVPRGV 94
Query: 95 KEDVEQL-FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV 153
VEQL F + + + ++ VG GE R++ V+ F+T H S GY +
Sbjct: 95 GRSVEQLVFAIGGDVGYP-VSVEEVGP--GEVAVDREEFQVRTFQTDHRTASVGYALVED 151
Query: 154 KQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAFTGDT 194
+K + E LG+P G + L E+ TV PE + +TGDT
Sbjct: 152 DRKGRFDRERAEELGVPVGPKFSHLHDGEAVELDDGTVVRPEQVVGDPRPGRTLVYTGDT 211
Query: 195 MS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
D +V A A +L+ ++T+ DD+ E+A GH+ E + A + A+
Sbjct: 212 RPHDAVVAAAE----GADLLIHDATFADDA--AERAAQTGHSTAGEAADIATRAGVAALA 265
Query: 254 LIHFSARHKVD--EIRRAVDAVPAPLAGRVFALTEGF 288
L H S+R+ D EIR + V G VF +G
Sbjct: 266 LTHISSRYAGDAREIREDAEKV---FDGEVFVAHDGL 299
>gi|358051251|ref|ZP_09145467.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
gi|357259264|gb|EHJ09105.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
Length = 306
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 36/255 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T+I P IKE VE + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDGKPLTLIGPKGIKEFVE----MSLSLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ E+ D F V+A H I S GY + + + Q L+ +GL PG
Sbjct: 115 PITYIEIDEDLSYSHDGFTVEARILNHGIPSYGYRIEAPETTGTINVQALRD--IGLEPG 172
Query: 167 DEIKKLKSSGTEITY-------------TVTTPEVAFTGDTMSDFIVDEANIDVLRARIL 213
+ +++K T Y + P +A GDT +E I A ++
Sbjct: 173 PKYQEVKLQDT-FEYNGQLYQSQDFRGQSKKGPIIAIFGDTKP--CANEQYI-AQYADLM 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
V E+TY++ T+ A +Y H+H+ ++ + + + K L+ H S R+ V++I + A+
Sbjct: 229 VHEATYIEGEKTL--ANNYHHSHIDDVFDLIKHAQVKHSLITHLSNRYNVEDIEQINQAL 286
Query: 274 PAPLAGRVFALTEGF 288
F+ + F
Sbjct: 287 QNKADTPQFSFVKDF 301
>gi|330834309|ref|YP_004409037.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
gi|329566448|gb|AEB94553.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
Length = 291
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 46/231 (19%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N + I+H H DH+ GLP + T G+Y R + ++ P +KE ++ FE
Sbjct: 54 NLIAITHLHADHVLGLPSLIQTMGMYDRKEKLYLMGPESLKEFLKVSFE----------- 102
Query: 115 HTLVGLDVGEEFCMR---KDLFVKAFKTYHVIQSQGYVVYSVK------QKLKQEYLGLP 165
HT EF K + V+ FKT HV+ SQG++V + ++LK+E G+
Sbjct: 103 HTYFRPGFPIEFVSTYEDKKVRVRPFKTCHVVPSQGFLVEEIDSINLDVERLKRE--GIT 160
Query: 166 GDEIKKLKSSGTEIT----------YTVTTPEV--AFTGDTM-SDFIVDEAN-IDVLRAR 211
+ + G E+ Y V V A+TGDT D +++ A +D
Sbjct: 161 DWRVMRELKGGREVKVGERTLKSEDYLVVKRGVRLAYTGDTRPCDSVINSAKGVD----- 215
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+L+ +ST+ D A +YGH+ SE A + E + + LIH S+R+K
Sbjct: 216 LLLHDSTFEDGI----DASEYGHSTSSEAALVAREAEARRLALIHISSRYK 262
>gi|319892488|ref|YP_004149363.1| ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|386319238|ref|YP_006015401.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
gi|317162184|gb|ADV05727.1| Ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|323464409|gb|ADX76562.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
Length = 305
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 118/255 (46%), Gaps = 37/255 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DH+ GLP + +R KP T+I P IK+ VE + + +S LN+
Sbjct: 59 IFITHMHGDHVFGLPGVLTSRSFQGGESKPLTVIGPKGIKDYVE----YNLSLTYSHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKL---KQEYLGLP-GDE 168
L +++ ++ + + F V A H I GY + + KL K + LG+P G +
Sbjct: 115 PLHIIEIEDQMNLSINGFEVNARPLNHGIPCFGYRIQAPDTPGKLDVQKLQALGMPPGPQ 174
Query: 169 IKKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+K+KS T E + V GDT E D A +LV E
Sbjct: 175 YQKVKSQDTFEFEGQIYNANDFKGPDKKGQVVTIFGDTRPSQYALELAKD---ADVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH---KVDEIRRAVDAV 273
STY+D T+ A Y H+H+ +++ EK K LL H S+R+ ++EI + V
Sbjct: 232 STYIDGDKTLANA--YHHSHIEDVLALIEKASVKHGLLTHISSRYMKEDINEIETKL-KV 288
Query: 274 PAPLAGRVFALTEGF 288
+PL+ F E F
Sbjct: 289 HSPLS---FQFVEDF 300
>gi|402083277|gb|EJT78295.1| hypothetical protein GGTG_03396 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 379
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 122/323 (37%), Gaps = 71/323 (21%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
Y + G S A T + P L+L D G C ++ ++ +F++H H DH +P +V
Sbjct: 53 YVLTGRSRAAWHTSFVIPQLNLLLDAGLCVNKVRPKH-IFLTHGHSDHTLLVPAFVD--- 108
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFE----VHRRMDHSEL---------------------- 113
R P I P I V+ ++ R D ++
Sbjct: 109 --RDDRPDIYCPVEIAGKVDAFINAKTILNSRGDTADHGLGGGAGGPKEEEEEEGVDGEW 166
Query: 114 --------------NHTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKL 157
H GL + + + + AF H G+V ++L
Sbjct: 167 DGKGKRPRGATRLDTHVTSGLRASDTVTLARARTITATAFDCDHTTPCLGFVFSQTSRRL 226
Query: 158 KQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD---------TMSDFIVDEANID-- 206
K E+ GL E+K L+ +G ++T +TP AF GD D+ +
Sbjct: 227 KAEHQGLGAAELKALRRAGVDVTAPHSTPVFAFLGDTTAKVLAAAAAVTTTADDGDGSSS 286
Query: 207 ---------VLRARI--LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
LR I ++ E +++++ QA HT +++ ++ +LI
Sbjct: 287 TESAAQWGRWLRGGIPVVITECSFLEERHRA-QADKTKHTIWTDLEPVVRRWPATTFVLI 345
Query: 256 HFSARHKVDEIRRAVDAVPAPLA 278
HFS R++ DE+RR +P P A
Sbjct: 346 HFSLRYEDDEVRRFFADMPDPPA 368
>gi|448451148|ref|ZP_21592714.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
gi|445811037|gb|EMA61050.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
Length = 310
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 36/255 (14%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F+SH H DH+ G+P V T G R P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + L VH + + GE + V+AF+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 155 Q-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTM 195
+ + K E LG+P G+ ++ + E V P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADTR 212
Query: 196 SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
EA D A +L+ ++T+ DD ++ARD H+ E A++ + K + L+
Sbjct: 213 PREATVEAAKD---ADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRLALV 267
Query: 256 HFSARHKVD--EIRR 268
H S+R+ D IRR
Sbjct: 268 HISSRYAADARPIRR 282
>gi|367027672|ref|XP_003663120.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
gi|347010389|gb|AEO57875.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
Length = 382
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 136 AFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS-GTEITYTVTTPEVAFTGDT 194
AF H + GYV +V KLK EY GL G E++ L+ G EIT V TP AF GDT
Sbjct: 221 AFACDHTVPCLGYVFSAVTPKLKPEYRGLAGAELRALRQERGVEITAPVATPVFAFLGDT 280
Query: 195 MSDFIVD---------EANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
+ + + R+++ E +++ + +QA HT S++
Sbjct: 281 TASVLASGPEWLGGGGGSGSGAGGVRVVITECSFLWEEHR-DQADRTRHTIWSDLDPVVR 339
Query: 246 KFENKAILLIHFSARHKVDEIR 267
+ + +LIHFS R+ +E+R
Sbjct: 340 RSPDTVFVLIHFSLRYSDEEVR 361
>gi|15921184|ref|NP_376853.1| hypothetical protein ST0948 [Sulfolobus tokodaii str. 7]
gi|41017574|sp|Q973F1.1|RNZ_SULTO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|342306331|dbj|BAK54420.1| ribonuclease Z [Sulfolobus tokodaii str. 7]
Length = 293
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 42/250 (16%)
Query: 38 SLDLAFDIGR-CPSRALSQNFLF-------ISHAHMDHIGGLPMYVATRGLYRMKPPTII 89
D FD G R + N F I+H H DH+ GLP + T G+Y K ++
Sbjct: 28 GFDALFDCGEGTQWRMMEHNLSFMKIKLIGITHMHGDHVLGLPGMIETMGMYSRKESLLL 87
Query: 90 V-PSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGY 148
+ P +KE +E +F + + N + +D E+ +++ + F+T H I+SQGY
Sbjct: 88 MGPKELKEFLEDIF----KKTYFYPNFEIQIIDKYED----ENIKISTFETCHTIESQGY 139
Query: 149 VVYSVKQKLKQEYLGLPGDEIKKLK-------SSGTEITYTVTTPE----------VAFT 191
++ K +LK + L + IK + EI V PE +A+T
Sbjct: 140 -LFEEKDRLKIDIDKLRKEGIKDWRIIRMLKEGKRVEINGKVLLPEDYLIVKKGIRIAYT 198
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT V A DV +L+ +ST++D+ ++A YGH++ + A K K
Sbjct: 199 GDTGPCEKVINAVKDV---DLLIHDSTFIDE----KEAYKYGHSNSYDAAYVALKANVKR 251
Query: 252 ILLIHFSARH 261
+ L H S R+
Sbjct: 252 LALFHISPRY 261
>gi|448427531|ref|ZP_21583846.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
gi|445678218|gb|ELZ30712.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
Length = 310
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 36/255 (14%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F+SH H DH+ G+P V T G R P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + L VH + + GE + V+AF+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 155 Q-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTM 195
+ + K E LG+P G+ ++ + E V P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADTR 212
Query: 196 SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
EA D A +L+ ++T+ DD ++ARD H+ E A++ + K + L+
Sbjct: 213 PREATVEAAED---ADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRLALV 267
Query: 256 HFSARHKVD--EIRR 268
H S+R+ D IRR
Sbjct: 268 HISSRYAADARPIRR 282
>gi|70607049|ref|YP_255919.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449067284|ref|YP_007434366.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449069555|ref|YP_007436636.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
gi|76363385|sp|Q4J9A4.1|RNZ_SULAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|68567697|gb|AAY80626.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035792|gb|AGE71218.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449038063|gb|AGE73488.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
Length = 292
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 38/230 (16%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N + ISH H DH+ GLP + T +Y R + ++ P+ +++ ++ S
Sbjct: 54 NLIGISHLHGDHVLGLPGIIQTMAMYSRQQKLLLMGPTTLQDYLK-----------SSSK 102
Query: 115 HTLVGLDVGEEFCMR---KDLFVKAFKTYHVIQSQGYVVYSV-KQKLKQEYLGLPGDE-- 168
HT EF ++L + F+T H I+S G+++ K K+ E L G
Sbjct: 103 HTYFKPGFETEFIQSYEDQNLTITTFRTCHTIESYGFLIKEKDKTKVDAERLKKEGITDW 162
Query: 169 --IKKLKSSG-TEITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVM 215
I+KLK EI V PE +A+TGDT D + +L+
Sbjct: 163 RIIRKLKEGKRVEIDTKVFLPEDYLYVKKGLSIAYTGDTAP---CDSVLNAIKGVDLLIH 219
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ST++++ +A DYGH++ ++ E A K + K + L H S R++ E
Sbjct: 220 DSTFLNE----REAHDYGHSNCTDAAEIASKADVKRLALYHISGRYQTTE 265
>gi|389843823|ref|YP_006345903.1| beta-lactamase superfamily metal-dependent hydrolase [Mesotoga
prima MesG1.Ag.4.2]
gi|387858569|gb|AFK06660.1| metal-dependent hydrolase, beta-lactamase superfamily III [Mesotoga
prima MesG1.Ag.4.2]
Length = 283
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 33/275 (12%)
Query: 25 LSIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRG 79
S A + T I++ + FD+G S L + +F++H H+DHI GL + TR
Sbjct: 6 FSKALYSTWILYRPERVLFDVGEGISTVLGNSVYAIKDIFLTHGHVDHISGLWGLINTRN 65
Query: 80 LY---RMKPPTIIVPS---CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK--- 130
R K I PS I+ ++ + ++ R+ + N L L+VG+E +R
Sbjct: 66 TAMGDRNKQLRINFPSGNRAIEAYLDFIIGMNPRLRY---NMILNPLNVGDEVYLRTAGS 122
Query: 131 -DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKK-LKSSGTE-ITYTVTT 185
V FK H I S GY VY ++KLK Y GLP EI +K G E IT T
Sbjct: 123 FRRHVTPFKVKHTIGEISYGYHVYEERRKLKDIYGGLPSKEIASVVKEKGREAITDTYLQ 182
Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
V +GDT + + E + + L+ E T++ + R+ H+ + E++
Sbjct: 183 KIVTISGDTFA--LPPEV---ISNSETLLHECTFL----VGKDRRNQNHSSIDEVICTVR 233
Query: 246 KFEN-KAILLIHFSARHKVDEIRRAVDAVPAPLAG 279
+ K ++L H S R+ +I++ + + L G
Sbjct: 234 QSSGIKRLILYHISGRY-TSKIKKWHNIIKKELEG 267
>gi|448434420|ref|ZP_21586230.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
gi|445685336|gb|ELZ37691.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
Length = 309
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 27/227 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F+SH H DH+ GLP V T G R P T+ P + + L VH
Sbjct: 57 IFVSHLHGDHVLGLPGLVQTLGFNDRTDPLTVHCPPGTDDHLRNL--VHAVGHDPAFPVR 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLP------ 165
+ + GE + V+AF+T H SQGYV+ + + K E LG+P
Sbjct: 115 IEPVAPGEVAYETDEYAVRAFETEHRTVSQGYVLAEDDRPGRFDRPKAEELGVPVGPKFG 174
Query: 166 ----GDEIKKLKSSGTEITYTVTTP----EVAFTGDTMSDFIVDEANIDVLRARILVMES 217
G+ ++ + + V P ++ +T DT EA D A +L+ ++
Sbjct: 175 RLHEGESVEAEDGTVVDPEQVVGPPRPGRKLVYTADTRPRESTVEAAAD---ADLLIHDA 231
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
T+ DD ++ARD H+ E A + K + L+H S+R+ D
Sbjct: 232 TFADD--MADRARDTAHSTGREAGSIAARANAKRLALVHISSRYAAD 276
>gi|300710119|ref|YP_003735933.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|448297109|ref|ZP_21487157.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|299123802|gb|ADJ14141.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|445580291|gb|ELY34677.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
Length = 306
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 117/263 (44%), Gaps = 40/263 (15%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + +F++H H DH+ GLP + T R P + P
Sbjct: 32 ELLFDCGEGTQRQMMRFSTGFSISAIFLTHVHGDHVLGLPGLLQTLDFNDRADPLVVHTP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYV 149
+ VE L +D + L + +V +R +D ++AF+T H S GYV
Sbjct: 92 RGTRRTVEDLVGA---LD-ARLGFPVEVREVAPGEVVRDGEDYEIQAFRTDHRTHSVGYV 147
Query: 150 VYSVKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VA 189
+ +K + E LG+P G +L + G + TV PE V
Sbjct: 148 LVEADRKGRFDRERAEELGVPVGPAFGRLHA-GEPVELADGTVIKPEQVVGSPRPGRRVV 206
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+TGDT +A+ D A +L+ ++T+ DD E+AR+ GH+ E E A +
Sbjct: 207 YTGDTRPTEETVDASED---ADLLIHDATFGDD--WAERARETGHSSAREAGELAARTGV 261
Query: 250 KAILLIHFSARHKVDEIRRAVDA 272
K + L H S+R+ D R A +A
Sbjct: 262 KRLALTHISSRYAGDASRLANEA 284
>gi|448512382|ref|ZP_21616371.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|448526826|ref|ZP_21619962.1| ribonuclease Z [Halorubrum distributum JCM 10118]
gi|445694350|gb|ELZ46480.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|445698506|gb|ELZ50549.1| ribonuclease Z [Halorubrum distributum JCM 10118]
Length = 310
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 36/255 (14%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +F+SH H DH+ G+P V T G R P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPLGT 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + L VH + + GE + V+AF+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 155 Q-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTM 195
+ + K E LG+P G+ ++ + E V P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADTR 212
Query: 196 SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
EA D A +L+ ++T+ DD ++ARD H+ E A++ + K + L+
Sbjct: 213 PREATVEAAKD---ADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRLALV 267
Query: 256 HFSARHKVD--EIRR 268
H S+R+ D IRR
Sbjct: 268 HISSRYAADARPIRR 282
>gi|284162424|ref|YP_003401047.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
gi|284012421|gb|ADB58374.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
Length = 305
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 39/261 (14%)
Query: 33 CIIFPSLDLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMK 84
I F + L FD G R + + +FI+H H DH G+ + T L R +
Sbjct: 25 LIQFEGIRLLFDCGEGTQRQMMIAKTGFKIHSVFITHLHTDHFIGIFGLIETMSLNERTE 84
Query: 85 PPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTYHV 142
+ VP KE+V+ + + R + LN+ + GL G+E K + AFKT H+
Sbjct: 85 RLRVFVP---KENVDFMKTLFRMFGYHNLNYPIEVYGLKDGDEVDFGK-FKILAFKTDHI 140
Query: 143 IQSQGYVVYSVKQ-----KLKQEYLGLPGDEI--KKLKSSGTEITYTVTTPE-------- 187
+ S GY + + + K E LG+P + K ++ EI + TP+
Sbjct: 141 VPSLGYALIERDRPGKFDRAKAEALGIPPGPLYSKLVRGEAIEINGRIITPDMVVGPKRR 200
Query: 188 ---VAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
V +TGDT E I+V R A +L+ ++++ D + A H+ E E
Sbjct: 201 GRKVVYTGDTRPT----ERTIEVARDADLLIHDASFTSDLQ--DWAIQTKHSTAREAAEI 254
Query: 244 AEKFENKAILLIHFSARHKVD 264
A++ + ++L H SAR+ D
Sbjct: 255 AKRANVRQLILTHISARYSKD 275
>gi|448735241|ref|ZP_21717458.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
gi|445798854|gb|EMA49245.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
Length = 307
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 107/253 (42%), Gaps = 38/253 (15%)
Query: 41 LAFDIGRCPSRAL---SQNF----LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S F +F++H H DH+ GLP T R +P I P
Sbjct: 31 LLFDCGEGTQRQMMRFSTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDV--GEEFCMRKDLFVKAFKTYHVIQSQGYVV 150
+ VE L V + L + + D G + + V+AF T H QS GY +
Sbjct: 91 GTRSTVENLVGV----TGARLGYPIRVSDAQPGGVVLRKNEYEVRAFATDHRTQSVGYAL 146
Query: 151 YSVKQKLK-----QEYLGLP-GDEIKKLKSSGT-EI-TYTVTTPE-----------VAFT 191
+K + E LG+P G + +L T E+ TV PE + +T
Sbjct: 147 IEDDRKGRFDREHAEELGVPEGPKFSRLHRGETVELDDDTVIEPEQVVGPPRPGRRIVYT 206
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT EA D A +LV E+T+ DD E+A GH+ + E A + K
Sbjct: 207 GDTRPTGATVEAATD---ADLLVHEATFADDR--AERAAQTGHSTAIQAAELANRAGAKR 261
Query: 252 ILLIHFSARHKVD 264
+ L H S+R+ D
Sbjct: 262 LALTHISSRYAGD 274
>gi|425737321|ref|ZP_18855594.1| ribonuclease Z [Staphylococcus massiliensis S46]
gi|425482669|gb|EKU49825.1| ribonuclease Z [Staphylococcus massiliensis S46]
Length = 305
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 46/238 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P IK VE ++ ++ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGVLTSRSFQGGEDKPLTIIGPKGIKSFVE----MNLKLSQSHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK------------QKLKQEYLG 163
+ +++ E DL + F+ I + G Y + +KL++ +G
Sbjct: 115 PIDVIELDHEM----DLVINEFQVTAKILNHGIPSYGFRIEAPSTVGKLDVEKLRE--IG 168
Query: 164 L-PGDEIKKLKSSGT-----EITYT-------VTTPEVAFTGDTMSDFIVDEANIDVL-- 208
+ PG +++KS T EI ++ P ++ GDT +N DVL
Sbjct: 169 MEPGPLYQQVKSEDTFSYNGEIYHSRDFRGPSKKGPVISVLGDTKP-----CSNEDVLVE 223
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
A ++V E+T++D T+ A++Y H+H+ ++ E ++ + K L H S R+ ++++
Sbjct: 224 NADVMVHEATFLDGDKTL--AQNYHHSHIDDVFELMQRNDVKYSCLTHISNRYTIEDV 279
>gi|124005252|ref|ZP_01690093.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
gi|123989074|gb|EAY28652.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
Length = 314
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 107/272 (39%), Gaps = 36/272 (13%)
Query: 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG 79
+ +EG S +G +T P L L D R +++ ++H H DHI + + G
Sbjct: 20 FTIEGYSRSGDKTFFYIPQLKLCLDAALAEGR--QGDYVLVTHTHNDHIADIEYLASRNG 77
Query: 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL-------NHTLVGLDVGEEFCMRKD- 131
+ I +P + +E+ R ++HS ++++ G+ G+ F + K+
Sbjct: 78 V------QIYLPKASQNYLEEYIIARRCLNHSAPYNPRLRGSYSITGVAGGDTFYIGKND 131
Query: 132 -LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI----------------KKLKS 174
VK H I GY KQ+LK EY L ++ ++ K
Sbjct: 132 RYQVKVVNCEHSIVCVGYAFAEKKQRLKPEYEALKQQKMAEGKMQEFGQLMAQKKQEAKQ 191
Query: 175 SGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
G + T P F GDT + V + N + ++ E T++ A + H
Sbjct: 192 KGETVEETYYQPLFVFMGDTHAS--VFDNNAWLFDYPTIITECTFLKPVNEA-YANERCH 248
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
TH + + + +L HFS R+ EI
Sbjct: 249 THWKHLKPHINQHPKCQFVLTHFSFRYTSQEI 280
>gi|448730275|ref|ZP_21712583.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
gi|445793443|gb|EMA44015.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
Length = 305
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 108/254 (42%), Gaps = 40/254 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + +F++H H DH+ GLP T R +P I P
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPP 90
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
+ VE L V R +N G +R+D + ++AF T H QS GY
Sbjct: 91 GTRSTVENLVGVTGARPGYPVRVNEASPG-----GVVLREDEYEIRAFATDHRTQSVGYA 145
Query: 150 VYSVKQKLK-----QEYLGLP-GDEIKKLKSSGT-EI-TYTVTTPE-----------VAF 190
+ +K + E LG+P G + +L T E+ TV PE V +
Sbjct: 146 LVEDDRKGRFDREHAEELGVPEGPKFSRLHEGETVELEDGTVVEPEQVVGPPRPGRKVVY 205
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
TGDT EA D A +L+ E+T+ DD E+A GH+ + E A + K
Sbjct: 206 TGDTRPTGTTVEAATD---ADLLIHEATFTDDR--AERAAQTGHSTSIQAAELANRAGAK 260
Query: 251 AILLIHFSARHKVD 264
+ L H S+R+ D
Sbjct: 261 RLALTHISSRYAGD 274
>gi|397578361|gb|EJK50870.1| hypothetical protein THAOC_30020 [Thalassiosira oceanica]
Length = 389
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 58/287 (20%)
Query: 41 LAFDIGRCP--SRALSQNFLFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKED 97
+AFDIG S A+ ++F+SH H+DH+GGL + + + + PT VP+ +
Sbjct: 46 VAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSFGGQAPTYFVPAQLLPQ 105
Query: 98 VEQLFEVHRRMD----------------HSELNHTLVGLDVGEE-------FCMRKDLFV 134
+E+ + +D S + LV ++ G+E + + +
Sbjct: 106 IEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFYA 165
Query: 135 KAFKTYHVIQ-SQGYVVYS-VKQKLKQEYLGLPGDEIKKLKSSGTEITY-TVTTPEVAFT 191
+A + H + GYV+ S LK EY L G I++L SG I V E +T
Sbjct: 166 RAVQVDHAGHPTLGYVLGSRTAGGLKPEYRQLNGARIRELVKSGVSIKGDPVERVEFGYT 225
Query: 192 GDTMSDFIVDEAN--------------ID-VLRARILVMESTYVD---DSTTVEQARDYG 233
GDT + +V ID + A++L E T++D D ++A + G
Sbjct: 226 GDTCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADERG 285
Query: 234 HTHLSEIVE-------YAEKFE--NKAILLIHFSARHKVDEIRRAVD 271
H H++ + A + E + +I+ H SA+++ RRA+D
Sbjct: 286 HLHVNHLESIFGSHDLLASRAESVSGSIVFYHLSAKYR--PARRALD 330
>gi|15791057|ref|NP_280881.1| hypothetical protein VNG2239C [Halobacterium sp. NRC-1]
gi|169236807|ref|YP_001690007.1| ribonuclease Z [Halobacterium salinarum R1]
gi|41017581|sp|Q9HN60.1|RNZ_HALSA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808640|sp|B0R7E2.1|RNZ_HALS3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|10581652|gb|AAG20361.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727873|emb|CAP14661.1| ribonuclease Z [Halobacterium salinarum R1]
Length = 308
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 112/262 (42%), Gaps = 60/262 (22%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + +FI+H H DH+ GLP V T R P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 95 KEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK-----------DLFVKAFKTYHVI 143
+ D+E L G DVG + + D V+AF+T H
Sbjct: 95 RGDIEDLV-------------FSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHST 141
Query: 144 QSQGYVVYSVKQ-----KLKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE------- 187
S GY + + + + E LG+P G + L G + TV +PE
Sbjct: 142 ASVGYALVEDDRTGRFDRARAEELGVPVGPKFSTLH-DGQPVELDDGTVVSPEQVVGDPR 200
Query: 188 ----VAFTGDTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE 242
+ +TGDT D +V A A +L+ ++T+ +D++ E+A + GH+ E +
Sbjct: 201 PGRTLVYTGDTRPHDPVVSAAE----DADLLIHDATFANDAS--ERAAETGHSTAGEAAD 254
Query: 243 YAEKFENKAILLIHFSARHKVD 264
A + KA+ L H S+R+ D
Sbjct: 255 VATEAGAKALALTHVSSRYAGD 276
>gi|417654474|ref|ZP_12304193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|417797458|ref|ZP_12444654.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
gi|329730860|gb|EGG67238.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|334266950|gb|EGL85420.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
Length = 306
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT ++ A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNEHVISRNADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINE 281
>gi|257387128|ref|YP_003176901.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
gi|257169435|gb|ACV47194.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
Length = 306
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 113/274 (41%), Gaps = 35/274 (12%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + +F++H H DH+ G+P + T R +P I P+
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFAVDHVFVTHTHGDHVLGIPGLLQTFDFNDREEPLAIHAPA 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ +E L V D + + G+ V+A +T H QS GY V
Sbjct: 91 GTRGTIEDLVSV--TGDTPSFPVRITQVSAGDTVLDGDGYEVRAIRTQHRCQSVGYAVVE 148
Query: 153 VKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPE-----------VAFTGD 193
+K + +E LG+ PG + KL + E PE + +TGD
Sbjct: 149 DDRKGRFDREKAEEELGIEPGPKYSKLHRGEPVEHEGRTIQPEAVVGPDRPGRTLVYTGD 208
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T V EA+ D A +LV ++T+ DD E+AR H E E A++ K +
Sbjct: 209 TRPTDSVVEASED---ADLLVHDATFADD--WAERARKTAHATGREAAEVAQEAGAKRLA 263
Query: 254 LIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287
L H S R+ + DA A G VF +G
Sbjct: 264 LTHISTRYGGNPTPILSDAREA-FDGEVFVPDDG 296
>gi|385781789|ref|YP_005757960.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|418574528|ref|ZP_13138697.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
gi|364522778|gb|AEW65528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|371979255|gb|EHO96490.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
Length = 306
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT ++ A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNEHVISRNADLMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINE 281
>gi|222100685|ref|YP_002535253.1| RNAse Z [Thermotoga neapolitana DSM 4359]
gi|221573075|gb|ACM23887.1| RNAse Z [Thermotoga neapolitana DSM 4359]
Length = 280
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 24 GLSIAGHETCIIFPSLDLAFDIGRCPSRALSQN-----FLFISHAHMDHIGGLPMYVATR 78
G S A T I + + FD G S L ++F++H H+DHI GL V R
Sbjct: 5 GFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
Query: 79 --GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK----D 131
G+ R KP + P + E + + + + L+ G+ +R
Sbjct: 65 NNGMGDREKPLDVFYPKGNRAVEEYTSFIKKANPELRFSFNVHPLEEGDRVFLRDAGGFK 124
Query: 132 LFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTPE 187
+V+ F+T HV S GY ++ V++KLK+E+ GL I +L K G + +T
Sbjct: 125 RYVQPFRTKHVATEVSFGYHIFEVRRKLKEEFQGLDSKVIARLVKEKGRDFVTREYHKKI 184
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
+ +GD+++ +D ++ +L+ E T++D R H + E++E +K
Sbjct: 185 LTISGDSLA---LDPEEVE--GTELLIHECTFLDP----RDRRYKNHASIDEVMETVKKA 235
Query: 248 ENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 236 GVKRVILYHISTRY 249
>gi|255513710|gb|EET89975.1| ribonuclease Z [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 300
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ G+ V T LY R +P +I VP + E L + D + + +
Sbjct: 57 IFITHMHGDHVIGIAGLVRTLSLYKRSEPLSIFVPRGYESAAESLL----KFDSAIMTYE 112
Query: 117 LVGLDVGEEFCMRKD-LFVKAFKTYHVIQSQGYVVYSVKQ----KLKQEYLGLPGDEIKK 171
+ + + R + + V+AFK H I + GY + K K E LG+ G + +
Sbjct: 113 IKVIGIKSGVVYRDEGIEVRAFKLVHSIPTYGYSFVEEGKLHFVKSKAESLGIKGKKFSE 172
Query: 172 LKSSG-----------TEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYV 220
++ G +EITY + + DT I A +LV E+TY
Sbjct: 173 IQKKGKIKIDGKLIKLSEITYPEKEKKFTYASDTRP---AASTVIAARNAELLVHEATYC 229
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
D + AR+ H+ +E + A+ + K ++L H SAR++
Sbjct: 230 ADLERL--ARERKHSTAAEAAQVAKNAKVKKLVLTHISARYR 269
>gi|21226408|ref|NP_632330.1| ribonuclease Z [Methanosarcina mazei Go1]
gi|452208920|ref|YP_007489034.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
gi|41017564|sp|Q8Q032.1|RNZ_METMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20904666|gb|AAM30002.1| metal dependent hydrolases [Methanosarcina mazei Go1]
gi|452098822|gb|AGF95762.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
Length = 305
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 41 LAFDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVP 91
L FD G R + +S + +F+SH H DH G+P + T L R +P TI P
Sbjct: 32 LLFDCGEGTQQQMMRAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFLGRKEPLTIYGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVV 150
KE EV + + + L + + G+++ + K+ V+A KT H S GY +
Sbjct: 92 EGTKE----FTEVFKVLGYCNLKYEVRGVELSPGDIVEGKNYVVRALKTEHSTPSLGYSL 147
Query: 151 YSVKQ-----KLKQEYLG-LPGDEIKKL-KSSGTEITYTVTTPE-----------VAFTG 192
+ + K LG LPG KL K + E+ + PE V ++G
Sbjct: 148 IENPRPGRFNREKAVELGVLPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSG 207
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT V EA+ D A +L+ + ++ D+ A + H+ E+ A++ + +
Sbjct: 208 DTRPCEAVLEASRD---ADVLIHDGSFADEMAG--WAEESMHSTAGEVASLAKEAGVRQL 262
Query: 253 LLIHFSARHKVD 264
+L H S+R+ D
Sbjct: 263 VLTHISSRYTDD 274
>gi|379795864|ref|YP_005325862.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872854|emb|CCE59193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 306
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK VE + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSL----NLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + + F V+A H I S GY V + + + LKQ +GL PG
Sbjct: 115 PITYIEIDDHLTYHHEGFTVEAHLLNHGIPSYGYRVIAPETTGTINVEALKQ--IGLEPG 172
Query: 167 DEIKKLKSSGT---------EITYTVTT---PEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T + T+ P VA GDT +E I A ++V
Sbjct: 173 PKYQEVKSQDTFEHNGQVYQSQDFRGTSKQGPIVAIFGDTKP--CANERLIS-QDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ +++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFTLIKEANVKRTLITHLSNRYNLEDINE 281
>gi|389820613|ref|ZP_10209827.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
gi|388462812|gb|EIM05203.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
Length = 314
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP + +R P I PS IKE VE R + L +
Sbjct: 59 IFISHMHGDHIFGLPGLLGSRSFQGGDEPLEIYGPSGIKEFVEMTLTFSR----THLTYR 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKL---KQEYLGLP-GDEI 169
+V ++ E +L V+ HVI S G+ + + KL K LG+P G +
Sbjct: 115 IVYHELTEGVLFEDELMTVETRLLNHVIPSYGFRIIQKPLPPKLMVNKALALGVPKGPLL 174
Query: 170 KKLKSSG-TEIT-------YTVTTP-EVAFTGDTMSDFIVDEANIDVLR-ARILVMESTY 219
KLK+ G EIT VT P E F + D EA +++ R A +LV E+T+
Sbjct: 175 AKLKNGGDVEITDGRWVRSGDVTEPEEPGFIVTILGDTRYCEAAVELGRGADVLVHEATF 234
Query: 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
D T+ + A +YGH+ + + E A ++L H SAR
Sbjct: 235 --DGTSKKMAGEYGHSTVYDAAETARLAGAATLILNHISAR 273
>gi|150021301|ref|YP_001306655.1| beta-lactamase domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149793822|gb|ABR31270.1| beta-lactamase domain protein [Thermosipho melanesiensis BI429]
Length = 279
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 118/254 (46%), Gaps = 30/254 (11%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRGL 80
S A + T I + + FD G S L+ +F++H H+DHI GL V TR
Sbjct: 7 SKALYTTWIYYSPERILFDAGEAVSTLLNNKVYAIKHVFLTHGHVDHISGLWSLVNTRNN 66
Query: 81 Y---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDV--GEEFCMRKD---L 132
R K I P +E+ + ++M+ S+L L V GE+ +R
Sbjct: 67 AMGDREKALNIYYPKG-NRSIEEYLKFIKKMN-SDLKFQLNTFSVEEGEKIILRDKNPRK 124
Query: 133 FVKAFKTYHVI--QSQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTTPEV 188
FV F+ H +S GY ++ ++KLK+E+L L D++ L K G++ +T + +
Sbjct: 125 FVIPFRVAHTYNEKSFGYHLFEERKKLKKEFLSLEQDKLALLAKEYGSDYLTENIEKKIL 184
Query: 189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKF 247
+GDT +++ + DVL IL E T+ ++ R Y H L +I++ +
Sbjct: 185 TISGDT---YLLKKE--DVLDTEILFHECTFFR-----KEDRKYKNHAVLEDILKLVKGT 234
Query: 248 ENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 235 SIKKLILYHISGRY 248
>gi|253733248|ref|ZP_04867413.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|386831116|ref|YP_006237770.1| hypothetical protein SAEMRSA15_14260 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798930|ref|ZP_12446084.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|417897979|ref|ZP_12541905.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|417901911|ref|ZP_12545787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|418313243|ref|ZP_12924737.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|418600026|ref|ZP_13163500.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|418645177|ref|ZP_13207305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|418656714|ref|ZP_13218513.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|421150523|ref|ZP_15610179.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639944|ref|ZP_21123944.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|448743020|ref|ZP_21724934.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
gi|253728788|gb|EES97517.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|334275092|gb|EGL93393.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|341845750|gb|EGS86952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|341849481|gb|EGS90624.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|365236514|gb|EHM77403.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|374395615|gb|EHQ66878.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|375024010|gb|EHS17455.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|375032877|gb|EHS26096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|385196508|emb|CCG16137.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|394329913|gb|EJE56015.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443406219|gb|ELS64803.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|445563707|gb|ELY19864.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
Length = 306
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|126652162|ref|ZP_01724344.1| ribonuclease Z [Bacillus sp. B14905]
gi|126591070|gb|EAZ85181.1| ribonuclease Z [Bacillus sp. B14905]
Length = 313
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P+ +++ +EQ F + + + L +
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPAGLQQWIEQTFSLSK----THLTYP 117
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK--------LKQEYLGLP-G 166
L ++V E D F V A + HV+ GY ++QK K + LG+P G
Sbjct: 118 LHFVEVQEGIVYEDDCFTVYAKELRHVVPCYGY---RIEQKDLPGELLIEKAKDLGVPKG 174
Query: 167 DEIKKLK-------SSGTEITY--TVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
+ +LK +G I V + FT + D E + + + A I+V E
Sbjct: 175 PLLGQLKRGHDVVLDNGDVIQAKDVVAPAKKGFTLTILGDTKYCEEAVQLSMGADIIVHE 234
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D TT + A +YGH E + A++ + +LL H SAR
Sbjct: 235 ATF--DGTTTDLAANYGHATNVEAAKVAQQARAQYLLLNHLSAR 276
>gi|57650460|ref|YP_186389.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87159998|ref|YP_494149.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195309|ref|YP_500113.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151221623|ref|YP_001332445.1| hypothetical protein NWMN_1411 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509732|ref|YP_001575391.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140075|ref|ZP_03564568.1| ribonuclease Z [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253732147|ref|ZP_04866312.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|258451162|ref|ZP_05699197.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|262049091|ref|ZP_06021968.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|262051174|ref|ZP_06023398.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|282924753|ref|ZP_06332420.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|284024564|ref|ZP_06378962.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 132]
gi|294848534|ref|ZP_06789280.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|304380909|ref|ZP_07363569.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014713|ref|YP_005290949.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|384550327|ref|YP_005739579.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|384862106|ref|YP_005744826.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384870047|ref|YP_005752761.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|387143113|ref|YP_005731506.1| hypothetical protein SATW20_15020 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686312|ref|ZP_11450449.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|417649964|ref|ZP_12299747.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|418277317|ref|ZP_12891904.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|418285027|ref|ZP_12897727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|418316388|ref|ZP_12927826.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|418319468|ref|ZP_12930848.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|418569487|ref|ZP_13133813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|418579431|ref|ZP_13143526.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|418641709|ref|ZP_13203914.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|418648724|ref|ZP_13210762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|418650598|ref|ZP_13212616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|418658987|ref|ZP_13220682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|418871275|ref|ZP_13425656.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|418903812|ref|ZP_13457853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906450|ref|ZP_13460476.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418912116|ref|ZP_13466097.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|418925766|ref|ZP_13479668.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928856|ref|ZP_13482742.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|418948563|ref|ZP_13500859.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|418955673|ref|ZP_13507610.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|419773376|ref|ZP_14299384.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|422742712|ref|ZP_16796715.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746204|ref|ZP_16800137.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|424785340|ref|ZP_18212143.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|440707357|ref|ZP_20888056.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
gi|440734956|ref|ZP_20914567.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|76363381|sp|Q5HFR8.1|RNZ_STAAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|122539452|sp|Q2FY67.1|RNZ_STAA8 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123485735|sp|Q2FGM9.1|RNZ_STAA3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|172048896|sp|A6QH51.1|RNZ_STAAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043793|sp|A8Z2D7.1|RNZ_STAAT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57284646|gb|AAW36740.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87125972|gb|ABD20486.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202867|gb|ABD30677.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150374423|dbj|BAF67683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368541|gb|ABX29512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724102|gb|EES92831.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|257861217|gb|EEV84030.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|259160811|gb|EEW45831.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|259162760|gb|EEW47325.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|269940996|emb|CBI49380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592760|gb|EFB97766.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|294824560|gb|EFG40983.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|302333176|gb|ADL23369.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751335|gb|ADL65512.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340636|gb|EFM06570.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315198805|gb|EFU29133.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|320140612|gb|EFW32466.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144148|gb|EFW35917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|329314182|gb|AEB88595.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|329725275|gb|EGG61762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|365172038|gb|EHM62783.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|365173607|gb|EHM64096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|365240587|gb|EHM81359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|365241072|gb|EHM81827.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|371985616|gb|EHP02677.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|374363410|gb|AEZ37515.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|375018164|gb|EHS11744.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|375025283|gb|EHS18688.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|375027884|gb|EHS21242.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|375036972|gb|EHS30030.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|375368744|gb|EHS72652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|375370759|gb|EHS74557.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|375371662|gb|EHS75429.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|377697458|gb|EHT21813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|377722373|gb|EHT46499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|377738768|gb|EHT62777.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742827|gb|EHT66812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744835|gb|EHT68812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|377763355|gb|EHT87211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|383972799|gb|EID88823.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|421956750|gb|EKU09079.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|436431051|gb|ELP28405.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506113|gb|ELP41952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
Length = 306
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|418875441|ref|ZP_13429698.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
gi|377769997|gb|EHT93763.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
Length = 306
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|15924494|ref|NP_372028.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927085|ref|NP_374618.1| hypothetical protein SA1335 [Staphylococcus aureus subsp. aureus
N315]
gi|148267988|ref|YP_001246931.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH9]
gi|150394053|ref|YP_001316728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156979823|ref|YP_001442082.1| hypothetical protein SAHV_1492 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253314872|ref|ZP_04838085.1| hypothetical protein SauraC_01605 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006290|ref|ZP_05144891.2| hypothetical protein SauraM_07475 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793581|ref|ZP_05642560.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|258411119|ref|ZP_05681399.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|258419917|ref|ZP_05682878.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|258437335|ref|ZP_05689319.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|258443540|ref|ZP_05691879.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|258446747|ref|ZP_05694901.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|258448662|ref|ZP_05696774.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|258454278|ref|ZP_05702248.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|269203131|ref|YP_003282400.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282893003|ref|ZP_06301237.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|282928974|ref|ZP_06336561.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|295406624|ref|ZP_06816429.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|296276346|ref|ZP_06858853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MR1]
gi|297245792|ref|ZP_06929657.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|384864726|ref|YP_005750085.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387150646|ref|YP_005742210.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|415692617|ref|ZP_11454537.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651188|ref|ZP_12300951.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|417801339|ref|ZP_12448434.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|417894562|ref|ZP_12538577.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|418424653|ref|ZP_12997767.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|418427647|ref|ZP_13000652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|418430489|ref|ZP_13003400.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433632|ref|ZP_13006224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|418437127|ref|ZP_13008923.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|418440027|ref|ZP_13011728.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|418443045|ref|ZP_13014644.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|418446107|ref|ZP_13017581.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|418449121|ref|ZP_13020507.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451934|ref|ZP_13023268.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454927|ref|ZP_13026186.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457805|ref|ZP_13029004.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418567174|ref|ZP_13131539.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|418640284|ref|ZP_13202516.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|418652910|ref|ZP_13214873.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|418662133|ref|ZP_13223687.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|418878420|ref|ZP_13432655.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881185|ref|ZP_13435402.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|418884036|ref|ZP_13438229.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886769|ref|ZP_13440917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|418895265|ref|ZP_13449360.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|418914603|ref|ZP_13468575.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920586|ref|ZP_13474518.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931808|ref|ZP_13485643.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991432|ref|ZP_13539093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784652|ref|ZP_14310415.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|424769036|ref|ZP_18196273.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|443635588|ref|ZP_21119716.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
gi|41017526|sp|P60196.1|RNZ_STAAM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|41017527|sp|P60197.1|RNZ_STAAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991504|sp|A7X2M2.1|RNZ_STAA1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043791|sp|A6U1X3.1|RNZ_STAA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043792|sp|A5IT32.1|RNZ_STAA9 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13701303|dbj|BAB42597.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247275|dbj|BAB57666.1| similar to metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus
aureus subsp. aureus Mu50]
gi|147741057|gb|ABQ49355.1| RNAse Z [Staphylococcus aureus subsp. aureus JH9]
gi|149946505|gb|ABR52441.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156721958|dbj|BAF78375.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787553|gb|EEV25893.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|257840269|gb|EEV64733.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|257844102|gb|EEV68490.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|257848540|gb|EEV72528.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|257850946|gb|EEV74889.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|257854322|gb|EEV77271.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|257857940|gb|EEV80829.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|257863557|gb|EEV86315.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|262075421|gb|ACY11394.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282589381|gb|EFB94472.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|282764321|gb|EFC04447.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|285817185|gb|ADC37672.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|294968371|gb|EFG44395.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|297177443|gb|EFH36695.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|312829893|emb|CBX34735.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129777|gb|EFT85767.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727372|gb|EGG63828.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|334276961|gb|EGL95201.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|341851856|gb|EGS92760.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|371982878|gb|EHP00027.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|375014848|gb|EHS08519.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|375021078|gb|EHS14585.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|375037078|gb|EHS30132.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|377694542|gb|EHT18907.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|377695071|gb|EHT19435.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|377712986|gb|EHT37199.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714371|gb|EHT38572.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|377723554|gb|EHT47679.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725722|gb|EHT49835.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|377730928|gb|EHT54986.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|377758105|gb|EHT81993.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377764312|gb|EHT88165.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|383363862|gb|EID41188.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|387717935|gb|EIK05930.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|387718229|gb|EIK06213.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|387719432|gb|EIK07377.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|387724856|gb|EIK12487.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|387727115|gb|EIK14647.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730177|gb|EIK17584.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735245|gb|EIK22374.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|387736721|gb|EIK23809.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|387736884|gb|EIK23970.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744815|gb|EIK31579.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|387744980|gb|EIK31742.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387746573|gb|EIK33302.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348427|gb|EJU83419.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|408423641|emb|CCJ11052.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408425631|emb|CCJ13018.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408427618|emb|CCJ14981.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408429607|emb|CCJ26772.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408431594|emb|CCJ18909.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408433588|emb|CCJ20873.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408435580|emb|CCJ22840.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408437564|emb|CCJ24807.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|443409229|gb|ELS67727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
Length = 306
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|49483754|ref|YP_040978.1| hypothetical protein SAR1581 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82751097|ref|YP_416838.1| metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257425627|ref|ZP_05602051.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428288|ref|ZP_05604686.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430925|ref|ZP_05607305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257433614|ref|ZP_05609972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257436527|ref|ZP_05612571.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|258423158|ref|ZP_05686051.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282904084|ref|ZP_06311972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|282905911|ref|ZP_06313766.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908821|ref|ZP_06316639.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911140|ref|ZP_06318942.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914309|ref|ZP_06322095.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282916770|ref|ZP_06324528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282919278|ref|ZP_06327013.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282924603|ref|ZP_06332271.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|283770575|ref|ZP_06343467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283958266|ref|ZP_06375717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|293503386|ref|ZP_06667233.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|293510401|ref|ZP_06669107.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|293530940|ref|ZP_06671622.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|295428080|ref|ZP_06820712.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590952|ref|ZP_06949590.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|384547739|ref|YP_005736992.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus ED133]
gi|384867523|ref|YP_005747719.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|387780598|ref|YP_005755396.1| hypothetical protein SARLGA251_14120 [Staphylococcus aureus subsp.
aureus LGA251]
gi|415682301|ref|ZP_11447617.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|416841158|ref|ZP_11904220.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|416848683|ref|ZP_11907877.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|417887931|ref|ZP_12532050.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|417890145|ref|ZP_12534224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|417896985|ref|ZP_12540928.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|418284064|ref|ZP_12896796.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|418308002|ref|ZP_12919669.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|418559026|ref|ZP_13123573.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|418564567|ref|ZP_13128988.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|418582431|ref|ZP_13146509.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597143|ref|ZP_13160676.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|418603369|ref|ZP_13166756.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|418889319|ref|ZP_13443452.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|418892234|ref|ZP_13446347.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898137|ref|ZP_13452207.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418901009|ref|ZP_13455065.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|418909355|ref|ZP_13463351.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|418917400|ref|ZP_13471359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923185|ref|ZP_13477101.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982509|ref|ZP_13530217.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986176|ref|ZP_13533861.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|418994230|ref|ZP_13541865.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|56749415|sp|Q6GGJ4.1|RNZ_STAAR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123549237|sp|Q2YYA2.1|RNZ_STAAB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49241883|emb|CAG40576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82656628|emb|CAI81054.1| probable metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257271321|gb|EEV03467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275129|gb|EEV06616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278355|gb|EEV08991.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257281707|gb|EEV11844.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257283878|gb|EEV14001.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|257846608|gb|EEV70629.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282313438|gb|EFB43833.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|282317088|gb|EFB47462.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282319257|gb|EFB49609.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282321490|gb|EFB51815.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282324835|gb|EFB55145.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327085|gb|EFB57380.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331203|gb|EFB60717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595702|gb|EFC00666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|283460722|gb|EFC07812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283790415|gb|EFC29232.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|290920208|gb|EFD97274.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|291095052|gb|EFE25317.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|291466765|gb|EFF09285.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|295128438|gb|EFG58072.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575838|gb|EFH94554.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|298694788|gb|ADI98010.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus ED133]
gi|312438028|gb|ADQ77099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|315195401|gb|EFU25788.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|323439494|gb|EGA97215.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|323441538|gb|EGA99189.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|341840251|gb|EGS81771.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|341855838|gb|EGS96682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|341856960|gb|EGS97787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|344177700|emb|CCC88179.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|365164928|gb|EHM56758.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|365242384|gb|EHM83093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|371975704|gb|EHO92996.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|371976376|gb|EHO93666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|374393184|gb|EHQ64499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|374395379|gb|EHQ66646.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|377702406|gb|EHT26728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704220|gb|EHT28530.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|377704790|gb|EHT29099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|377710841|gb|EHT35079.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|377730528|gb|EHT54595.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|377735144|gb|EHT59180.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|377744027|gb|EHT68005.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|377750574|gb|EHT74512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|377752002|gb|EHT75926.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|377752827|gb|EHT76745.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|377761172|gb|EHT85048.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 306
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|392972174|ref|ZP_10337566.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|403046500|ref|ZP_10901969.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
gi|392509887|emb|CCI60868.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|402763196|gb|EJX17289.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
Length = 306
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 40/236 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T++ P I +Q E ++ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTVVGPKGI----QQFIETALQLSESRLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ E+ + F V A H I S GY + + Q LK +GL PG
Sbjct: 115 PITYIEIEEQLNYHHNGFNVNAHLLNHGITSYGYRIEAPYTPGKIDVQALKD--IGLEPG 172
Query: 167 DEIKKLKSSGT----EITY--------TVTTPEVAFTGDTM---SDFIVDEANIDVLRAR 211
+ + +K + T + Y V P +A GDTM ++ ++ + A
Sbjct: 173 PKYQDIKINETFEHNGLIYDSNQFKGDAVKGPVIAIFGDTMPCKNELLIAQ------DAT 226
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
++V ESTY++ + A +Y H+H+ ++ + ++ + + L+ H S R+ +E+
Sbjct: 227 VMVHESTYIEGDKML--ANNYHHSHIDDVFDLIDEAQVEYSLITHISNRYTKEEVE 280
>gi|379021285|ref|YP_005297947.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|386729204|ref|YP_006195587.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|387602845|ref|YP_005734366.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|404478852|ref|YP_006710282.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
gi|417905435|ref|ZP_12549246.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|418310092|ref|ZP_12921642.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|418978226|ref|ZP_13526027.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|283470783|emb|CAQ49994.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|341843711|gb|EGS84933.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|359830594|gb|AEV78572.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|365237549|gb|EHM78395.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|379993842|gb|EIA15287.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|384230497|gb|AFH69744.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|404440341|gb|AFR73534.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
Length = 306
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|21283187|ref|NP_646275.1| hypothetical protein MW1458 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486342|ref|YP_043563.1| hypothetical protein SAS1444 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297207776|ref|ZP_06924211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300911857|ref|ZP_07129300.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|418934476|ref|ZP_13488298.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988572|ref|ZP_13536244.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|448740667|ref|ZP_21722643.1| ribonuclease Z [Staphylococcus aureus KT/314250]
gi|41017562|sp|Q8NWE6.1|RNZ_STAAW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56749386|sp|Q6G960.1|RNZ_STAAS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|21204627|dbj|BAB95323.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244785|emb|CAG43221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887793|gb|EFH26691.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300886103|gb|EFK81305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|377717665|gb|EHT41840.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|377770570|gb|EHT94331.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|445548634|gb|ELY16884.1| ribonuclease Z [Staphylococcus aureus KT/314250]
Length = 306
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H + S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGVPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|73669295|ref|YP_305310.1| ribonuclease Z [Methanosarcina barkeri str. Fusaro]
gi|72396457|gb|AAZ70730.1| RNAse Z [Methanosarcina barkeri str. Fusaro]
Length = 305
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHR 106
R + ++ + +F+SH H DH G+P + T K P +I E + E+ +
Sbjct: 46 RAKTGMMNLSSIFVSHFHADHFLGIPGLIQTMSFMGRKEPLLIYGP---EGTREFTELFK 102
Query: 107 RMDHSELNHTLVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQE 160
+ + LN+ + G+ + + RK+ ++A KT H I S GY + + + K
Sbjct: 103 ALGYFNLNYEVQGIQLKPGDVVERKEYVIRALKTEHSISSLGYALIENPRPGRFNREKAI 162
Query: 161 YLGL-PGDEIKKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDV 207
LG+ PG KL+ T E+ + PE V ++GDT + +A+ D
Sbjct: 163 ELGIPPGPLFSKLQKGKTVEVNGKLVKPEDVMGALRPGRTVVYSGDTRPCEPILKASRD- 221
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
A +L+ + ++ D+ + A + H+ E+ A++ + ++L H S+R+ D
Sbjct: 222 --ADVLIHDGSFADE--MADWAEESKHSTAGEVAALAKEAGVRRLILTHISSRYTDD 274
>gi|418562635|ref|ZP_13127092.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
gi|371973739|gb|EHO91087.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
Length = 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDYLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++KS T E V P VA GDT + A ++V
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGDTKP---CSNERVISRDADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 230 HEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|406667570|ref|ZP_11075326.1| Ribonuclease Z [Bacillus isronensis B3W22]
gi|405384623|gb|EKB44066.1| Ribonuclease Z [Bacillus isronensis B3W22]
Length = 313
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R + TI P+ +++ +EQ ++ + + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDVLTIYGPAGLQQWIEQTLQLSK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQE--------YLGLP-G 166
+ ++V + + F V+A HV+ GY ++QK Q LG+P G
Sbjct: 115 IEFVEVKDGIVFEDEKFTVRALSLQHVVPCFGY---RIEQKPMQGELLIDKALALGVPKG 171
Query: 167 DEIKKLKSS-------GT--EITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
+ +LK+ GT E + + P+ FT + D E +I + + A ++V E
Sbjct: 172 PLLGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDTKYCENSIRLAQNADVVVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D +T+E A YGH +E + A++ + + +LL H SAR
Sbjct: 232 ATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISAR 273
>gi|393201123|ref|YP_006462965.1| metal-dependent hydrolase [Solibacillus silvestris StLB046]
gi|327440454|dbj|BAK16819.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Solibacillus silvestris StLB046]
Length = 313
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R + TI P+ +++ +EQ ++ + + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDMLTIYGPAGLQQWIEQTLQLSK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQE--------YLGLP-G 166
+ ++V + + F V+A HV+ GY ++QK Q LG+P G
Sbjct: 115 IEFVEVKDGIVFEDEKFTVRALSLQHVVPCFGY---RIEQKPMQGELLIDKALALGVPKG 171
Query: 167 DEIKKLKSS-------GT--EITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
+ +LK+ GT E + + P+ FT + D E +I + + A ++V E
Sbjct: 172 PLLGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDTKYCENSIRLAQNADVVVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D +T+E A YGH +E + A++ + + +LL H SAR
Sbjct: 232 ATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISAR 273
>gi|417643199|ref|ZP_12293259.1| ribonuclease Z [Staphylococcus warneri VCU121]
gi|445059596|ref|YP_007385000.1| ribonuclease Z [Staphylococcus warneri SG1]
gi|330685978|gb|EGG97601.1| ribonuclease Z [Staphylococcus epidermidis VCU121]
gi|443425653|gb|AGC90556.1| ribonuclease Z [Staphylococcus warneri SG1]
Length = 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T++ P I++ +E + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLVGPKGIQKYIETTL----TLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ E + F V+A H I+S GY + + LK +GL PG
Sbjct: 115 PITYIEIDESLNYHHNGFIVQAEMLNHGIKSFGYRIETPTTPGTIDVDALKA--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K++ T E V + P VA GDT +I A I+V
Sbjct: 173 PKYQEVKTNNTFEFNGKVYQSDEFKGEAKSGPVVAIFGDTKP---CPNEHIIANEADIMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+TY++ T+ A Y H+H+ ++ + K L+ H S R+ +EI
Sbjct: 230 HEATYIEGEKTL--ANSYHHSHIDDVFNLIRQANVKQSLITHMSNRYTKEEIEN 281
>gi|418951515|ref|ZP_13503601.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
gi|375372488|gb|EHS76226.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
Length = 306
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 28/230 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ + D F V+A H I S GY V + + + LK +GL PG
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKN--IGLEPG 172
Query: 167 DEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV---------DEANIDVLRARILVMES 217
+ +++KS T F G++ IV + A ++V E+
Sbjct: 173 PKYQEVKSHDTFEHNGQVYQSKDFRGESKQGQIVAIFGDTKPCSNERVISRDADVMVHEA 232
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
TY+D + A +Y H+H+ ++ ++ K L+ H S R+ ++I
Sbjct: 233 TYIDGEKHL--ANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDIN 280
>gi|223043089|ref|ZP_03613136.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|417908051|ref|ZP_12551818.1| ribonuclease Z [Staphylococcus capitis VCU116]
gi|222443300|gb|EEE49398.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|341595138|gb|EGS37816.1| ribonuclease Z [Staphylococcus capitis VCU116]
Length = 306
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FISH H DHI GLP + +R KP T+I P I+ +E ++ S LN+
Sbjct: 59 IFISHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPKGIQNYIETSL----KLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ ++F + F V+A H I S GY + + + LK +GL PG
Sbjct: 115 PITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIEAPTTPGTINVEALKA--IGLEPG 172
Query: 167 DEIKKLKSSGT----EITYTV--------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K T + Y P +A GDT D + A ++V
Sbjct: 173 PKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGDTKP---CDNEYVLAKNADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY++ T+ A +Y H+H+ ++ + + L+ H S R+ ++++
Sbjct: 230 HEATYIEGEKTL--ANNYHHSHIDDVFQLIKNANVGKSLITHISNRYNLEDVE 280
>gi|448727066|ref|ZP_21709443.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
gi|445792266|gb|EMA42877.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
Length = 305
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 38/261 (14%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S + +F+SH H DH+ GLP T R + I P
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPP 90
Query: 93 CIKEDVEQLFEV-HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
K VE L V R + H + V +R+D + V+AF+T H +S GY +
Sbjct: 91 GTKSAVENLVGVTGARPGYPIRVHEVQPGGV----ALREDEYEVRAFETDHRTRSVGYAL 146
Query: 151 YSVKQK-----LKQEYLGLPGDEIKKLKSSGTEITY---TVTTPE-----------VAFT 191
+K + E LG+P + G + TV PE + +T
Sbjct: 147 VEDDRKGRFDRERAEELGVPAGPLFSKLHEGNPVELDDGTVVDPEQVVGEPRPGRRIVYT 206
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT EA D A +L+ E+++ +D + E+A GH+ + E A + + K
Sbjct: 207 GDTRPTAATTEAASD---ADLLIHEASFGEDRS--ERAGKTGHSTARQAAELATRADAKR 261
Query: 252 ILLIHFSARHKVDEIRRAVDA 272
+ L H S+R+ + R A +A
Sbjct: 262 LALTHVSSRYAGESDRLAAEA 282
>gi|456391862|gb|EMF57220.1| hypothetical protein SBD_1381 [Streptomyces bottropensis ATCC
25435]
Length = 344
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 107/286 (37%), Gaps = 55/286 (19%)
Query: 12 GRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGL 71
G G+ L GY S A +T P L + D G R + + ++H H+DH L
Sbjct: 46 GTGLTLTGY-----SRANDKTFFHLPELRCSLDAGLAEGRQVET--VLLTHTHLDHSKDL 98
Query: 72 PMYVATRG----LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH------------ 115
Y+A R +Y + ++ SELNH
Sbjct: 99 D-YLAARDAGVDIYLPAAAEPYAAAYLRAS-------------SELNHGAGFDPSRAPAC 144
Query: 116 TLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI---- 169
L G+ G EF + R + V+ + H + GY K LK EY L +
Sbjct: 145 RLHGVRAGAEFSVGRRGEYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGR 204
Query: 170 ---------KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYV 220
++ K + + P AF GDT +D N + +++ E TY+
Sbjct: 205 AAEFGRIIAERRKEGPGTVDEEIRRPAFAFLGDTHADVFA--RNPWLFDYPVIITECTYL 262
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
DD + +AR GHT SE+ E +L HFS RH E+
Sbjct: 263 DDGQ-LTRARQVGHTVWSELRPVVEAHPETLFVLTHFSLRHCDQEV 307
>gi|239636830|ref|ZP_04677829.1| ribonuclease Z [Staphylococcus warneri L37603]
gi|239597504|gb|EEQ80002.1| ribonuclease Z [Staphylococcus warneri L37603]
Length = 306
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P I++ +E + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPKGIQKYIETTL----TLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ E D F V+A H I S GY + + LK +GL PG
Sbjct: 115 PITYIEIDESLNYHHDGFTVQAEMLNHGIISYGYRIETPTTPGTIDVDALKA--IGLEPG 172
Query: 167 DEIKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K++ T E + + P VA GDT +I A I+V
Sbjct: 173 PKYQEVKTNDTFEFNGKIYQSDEFKGEAKSGPVVAIFGDTKP---CPNEHIIANDADIMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVP 274
E+TY++ T+ A Y H+H+ ++ + + K L+ H S R+ +EI +
Sbjct: 230 HEATYIEGEKTL--ANSYHHSHIDDVFDLIRQSNVKHSLITHMSNRYTKEEIENIYQELK 287
Query: 275 A 275
A
Sbjct: 288 A 288
>gi|340354558|ref|ZP_08677261.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
gi|339623227|gb|EGQ27731.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
Length = 315
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 116/228 (50%), Gaps = 38/228 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+FI+H H DHI GLP ++++R + P I P+ +KE ++ +++ ELN H
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFLGGEAPVDIYGPAGLKEWLQHTYQITGTHLPYELNIH 118
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--------VKQKLKQEYLGLP- 165
+V + D F V A + HV++S GY + + + ++Q G+P
Sbjct: 119 -----EVADGLIFESDQFKVYAMEVQHVVKSYGYRIEQKDLPGTLLIDRAIEQ---GVPK 170
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD----FIVD--------EANIDVLR-ARI 212
G +++LK G +I + E F+ D S+ FI+ +++I++ R A I
Sbjct: 171 GPLLQRLK-EGQDI--ELDNGETVFSRDVTSERKKGFIITVIGDTSYCQSSIELARNADI 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
L+ E+T+ D+ + AR++GH+ + + + A++ K +++ H SAR
Sbjct: 228 LIHEATFTDE--YAKGAREFGHSTIVDAAQIAKEAHVKNLIVNHISAR 273
>gi|315658219|ref|ZP_07911091.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|418635257|ref|ZP_13197637.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
gi|315496548|gb|EFU84871.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|374842042|gb|EHS05493.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
Length = 307
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T++ P IK VE + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPHGIKAFVETTL----SLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGL-PGDE 168
+ +++ + F + F V A H I S GY V + K+ E LGL PG +
Sbjct: 115 PITFIEIDDGFSYHHNGFKVTAKVLNHGIVSYGYRVEAPTTPGKINVEALKALGLEPGPK 174
Query: 169 IKKLKSSGT----EITYTVTT--------PEVAFTGDTMSDFIVDEANIDVLRARILVME 216
+++K + T I Y P +A GDT I A++++ E
Sbjct: 175 YQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDTKP---CANEKIIAQDAQLMIHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+TY++ + A +Y H+H+ ++ + + K L+ H S R+ ++I
Sbjct: 232 ATYIEGDKVL--ANNYHHSHIDDVFQLIHQAHVKQTLITHMSNRYNKEDIHH 281
>gi|289550723|ref|YP_003471627.1| ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|385784351|ref|YP_005760524.1| hypothetical protein SLUG_14070 [Staphylococcus lugdunensis
N920143]
gi|418414025|ref|ZP_12987241.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180255|gb|ADC87500.1| Ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|339894607|emb|CCB53889.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877663|gb|EKS25555.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 307
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T++ P IK VE + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPHGIKAFVETTL----SLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGL-PGDE 168
+ +++ + F + F V A H I S GY V + K+ E LGL PG +
Sbjct: 115 PITFIEIDDGFSYHHNGFKVTAKVLNHGIVSYGYRVEAPTTPGKINVEALKALGLEPGPK 174
Query: 169 IKKLKSSGT----EITYTVTT--------PEVAFTGDTMSDFIVDEANIDVLRARILVME 216
+++K + T I Y P +A GDT I A++++ E
Sbjct: 175 YQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDTKP---CANEKIIAQGAQLMIHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+TY++ + A +Y H+H+ ++ + + K L+ H S R+ ++I
Sbjct: 232 ATYIEGDKAL--ANNYHHSHIDDVFQLIHQAHVKQTLITHMSNRYNKEDIHH 281
>gi|418324923|ref|ZP_12936142.1| ribonuclease Z [Staphylococcus pettenkoferi VCU012]
gi|365223586|gb|EHM64870.1| ribonuclease Z [Staphylococcus pettenkoferi VCU012]
Length = 306
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 40/235 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R + KP TII P IK VE + S+LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGKGKPLTIIGPKGIKAFVETAL----ALSASKLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
L +++ E + F V A H I S GY + + + LK+ +GL PG
Sbjct: 115 PLTFIEIDNELSYQHHGFEVTAQILNHGIISFGYRIEAPSTPGTIDVEALKR--IGLEPG 172
Query: 167 DEIKKLKSSGTEITY---------------TVTTPEVAFTGDTMSDFIVDEANIDVLRAR 211
+ +++KS E T+ P VA GDT +E + +A
Sbjct: 173 PKYQQVKS---EETFEHAGQLYDSKDFKGPAKRGPIVAIFGDTKP--CANETTL-AHQAD 226
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
++V E TY++ T+ A +Y H+H++++ + + K L+ H S R+ +D++
Sbjct: 227 VMVHEGTYLEGDRTL--ANNYHHSHVADVFQLMANAQVKHGLITHISNRYNLDDV 279
>gi|91774034|ref|YP_566726.1| ribonuclease Z [Methanococcoides burtonii DSM 6242]
gi|91713049|gb|ABE52976.1| Ribonuclease Z [Methanococcoides burtonii DSM 6242]
Length = 305
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 29/246 (11%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVH 105
R + ++ + +FI+H H DHI G+P V T R +P TI P E VE+ ++
Sbjct: 46 RAKTGMMNLSSIFITHFHADHILGIPGLVQTMSFQGRTEPLTIYGP----EWVEEFVKIL 101
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQ 159
+ + +L + + + +++D + V A KT H I S G+ + ++ + K
Sbjct: 102 SAIGYYKLKFEIKAVKLKSGTSVKRDGYSVIALKTDHNIPSIGFALVEDERPGRFDRDKA 161
Query: 160 EYLGLP-GDEIKKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANID 206
LG+P G KL G+ E+ + + E V ++GDT V EA++
Sbjct: 162 IALGVPVGPLFSKLHHGGSVEVDGNIISAEDVVGEPRPGRTVVYSGDTRPCLDVLEASVG 221
Query: 207 VLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
A +L+ +ST DD ++ A++ H+ E A+K K ++L H S+R+ D
Sbjct: 222 ---ADLLIHDSTLADD--MLDWAKEAMHSTAGEAAALAKKAGVKKLVLTHISSRYSDDAT 276
Query: 267 RRAVDA 272
DA
Sbjct: 277 LLLNDA 282
>gi|448457241|ref|ZP_21595736.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
gi|445810822|gb|EMA60837.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
Length = 310
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 115/273 (42%), Gaps = 56/273 (20%)
Query: 41 LAFDIGRCPSRALSQN-------FLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + ++ +F+SH H DH+ G+P V T G R +P TI P
Sbjct: 33 LLFDCGEGTQRGMMRHGTGFGITHVFVSHLHGDHVLGIPGLVQTLGFNDREEPLTIHCPP 92
Query: 93 CIKEDVEQLFEVHR-------RMDHSELNHTLVGLDV-GEEFCMRKDLFVKAFKTYHVIQ 144
+D+ L VH R+ E++ V LD G E V+AF+T H +
Sbjct: 93 GTADDLRDL--VHAVGHDPAFRIRIDEVSPGEVALDADGYE--------VRAFETTHRTK 142
Query: 145 SQGYVVYSVKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPEVA 189
SQGYV+ + + K E LG+P G+ ++ S + V P
Sbjct: 143 SQGYVLDEDDRPGRFDRPKAEALGVPVGPKFGRLHAGESVEADDGSVVDPGQVVGPPRPG 202
Query: 190 ----FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
+T DT + A +LV ++T+ DD ++ARD H+ E AE
Sbjct: 203 RKFVYTADTRP---REGTVAAAADADLLVHDATFADDME--DRARDTAHSTGREAGSVAE 257
Query: 246 KFENKAILLIHFSARHKVD------EIRRAVDA 272
+ K + L+H S+R+ D E R A D
Sbjct: 258 RANAKRLALVHISSRYAADASPILREAREAFDG 290
>gi|448302492|ref|ZP_21492471.1| ribonuclease Z [Natronorubrum tibetense GA33]
gi|445581158|gb|ELY35520.1| ribonuclease Z [Natronorubrum tibetense GA33]
Length = 311
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 38/251 (15%)
Query: 43 FDIGRCPSRAL---SQNF----LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD+G R + S F +F++H H DHI GLP + T R KP I P+
Sbjct: 33 FDVGEGTQRQMMRFSTGFDISTIFLTHLHGDHILGLPGLLQTLDFNERTKPLEICTPAGT 92
Query: 95 KEDVEQLFEVH-RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV 153
DV+Q D+ L DVG E + ++AF+T H +S GY +
Sbjct: 93 GTDVDQFLTASGTDPDYPVRIRELTSGDVGLE---HDEYTIQAFETEHRTRSLGYALVEA 149
Query: 154 KQKLKQEY-----LGLP-GDEIKKL-KSSGTEIT-YTVTTPE-----------VAFTGDT 194
++K + + LG+P G +L + + E+T TV P+ V +TGDT
Sbjct: 150 ERKGRFDRERALELGVPEGPMFGRLHEGNSVELTDGTVIHPDQVVGDPRPGRRVVYTGDT 209
Query: 195 M-SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
+D + A+ A +L+ ++ + D V++AR GH+ E A + + K +
Sbjct: 210 RPTDRTISIAS----DADLLIHDAMFAQDR--VDRARQTGHSTAEEAATVAHRADVKQLA 263
Query: 254 LIHFSARHKVD 264
L H S+R+ D
Sbjct: 264 LTHVSSRYAGD 274
>gi|256081658|ref|XP_002577085.1| ribonuclease z chloroplast [Schistosoma mansoni]
gi|353232679|emb|CCD80034.1| putative ribonuclease z, chloroplast [Schistosoma mansoni]
Length = 190
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 13/113 (11%)
Query: 175 SGTEITYTVTTPEVAFTGDTMSDFIVDEANI---DVLRARILVMESTYVDD-STTVEQAR 230
SG E+ PE+A+ GD+ I+ EAN D+L +R+L+ME+T++D+ +E AR
Sbjct: 72 SGKEV------PEIAYLGDSRFT-IIREANSLCPDLLSSRLLIMEATFLDNPDRKIESAR 124
Query: 231 DYGHTHLSEIVEYAEKFEN-KAILLIHFSARHKVDEIRRAVDA-VPAPLAGRV 281
+GHTHL EI + A ++ I LIHFS R+ ++I R +P L R+
Sbjct: 125 SHGHTHLDEIRQNASLLKSVDYIYLIHFSDRYTHNDIIRLCHKDMPDWLVSRI 177
>gi|314933681|ref|ZP_07841046.1| ribonuclease Z [Staphylococcus caprae C87]
gi|313653831|gb|EFS17588.1| ribonuclease Z [Staphylococcus caprae C87]
Length = 307
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P I+ +E ++ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPKGIQNYIETSL----KLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ ++F + F V+A H I S GY + + + LK +GL PG
Sbjct: 115 PITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIEAPTTPGTINVEALKS--IGLEPG 172
Query: 167 DEIKKLKSSGT----EITYTV--------TTPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+ +++K T + Y P +A GDT D + A ++V
Sbjct: 173 PKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGDTKP---CDNEYVLAKNADVMV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+TY++ T+ A +Y H+H+ ++ + + L+ H S R+ ++++
Sbjct: 230 HEATYIEGDKTL--ANNYHHSHIDDVFQLIKNANVGKSLITHISNRYNLEDVE 280
>gi|338997225|ref|ZP_08635926.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
gi|338765822|gb|EGP20753.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
Length = 320
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 47/234 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ I+H H DH GLP +A+ + R P TI+ P+ IK +E EV T
Sbjct: 58 ILITHVHGDHCYGLPGILASAAMGGRKAPLTIVAPASIKTWLEATCEV-----------T 106
Query: 117 LVGLDVGEEFCMRKDL--------FVKAFKTYHVIQSQGYVVYSVK-------QKLKQEY 161
+ L EF DL V+ F H + S Y K KL Q+
Sbjct: 107 QLCLPFALEFIASDDLPSVEFENIAVETFSLSHRVASYAYAFTERKVDAVLDVAKLAQK- 165
Query: 162 LGLPGDEIKKLKSSGTEITYT------------VTTP-EVAFTGDTMSDFIVDEANIDVL 208
G+P + G +I + TP +V GD +++EA +
Sbjct: 166 -GIPRGPLWGQLKQGFDIEFAGERLKSHDYLIFKNTPRKVVIAGDNDQPDLLNEACAE-- 222
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A++LV E+TY ++ ++A D GH++ + +AE + +++L HFS R++
Sbjct: 223 -AQVLVHEATYTEE--MAQKAGDVGHSYAKLVAAFAESIKLPSLVLTHFSPRYQ 273
>gi|433637536|ref|YP_007283296.1| ribonuclease Z [Halovivax ruber XH-70]
gi|433289340|gb|AGB15163.1| ribonuclease Z [Halovivax ruber XH-70]
Length = 311
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 116/267 (43%), Gaps = 47/267 (17%)
Query: 33 CIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY- 81
C IF + + L FD G R L + + LF++H H DH+ G+P + T
Sbjct: 22 CSIFVAREGDSLLFDAGEGTQRQLMRYGTGFDISELFVTHVHGDHVLGIPGLLQTMDFND 81
Query: 82 RMKPPTIIVPSCIKEDVEQL-FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R + I VP + V +L F + H + +D G+ + V+AF+T
Sbjct: 82 RERKLRIHVPRGTRRQVRELAFSLDA---HISFPVEIADVDDGDVVSRGDEYEVRAFRTD 138
Query: 141 HVIQSQGYVVYSVKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE----- 187
H +S GY + ++K + E LG+P G + +L + E+ TV PE
Sbjct: 139 HDTRSVGYALVEDERKGRFDRERAEELGVPVGPKFSQLHEGEPVELDDGTVVRPEQVVGE 198
Query: 188 ------VAFTGDTMSDF----IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHL 237
+ +TGDT I DE + +L+ ++T+ DD E+A D H+
Sbjct: 199 PRPGRSLVYTGDTRPTARTVEIADEPD-------LLIHDATFADDR--AERAADTAHSTA 249
Query: 238 SEIVEYAEKFENKAILLIHFSARHKVD 264
+ E A + K + L+H S+R+ D
Sbjct: 250 RQAAEIANRASAKRLALVHLSSRYAGD 276
>gi|448497735|ref|ZP_21610549.1| ribonuclease Z [Halorubrum coriense DSM 10284]
gi|445699476|gb|ELZ51501.1| ribonuclease Z [Halorubrum coriense DSM 10284]
Length = 310
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 31/234 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F+SH H DH+ G+P V T G R P TI P + L VH
Sbjct: 57 VFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTIHCPPGTGGQLHDL--VHAVGHDPAFPVR 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLP------ 165
+ ++ G + V+AF+T H SQGYV+ + + + E LG+P
Sbjct: 115 VEPVEPGAVAFETDEYEVRAFETEHRTVSQGYVLEEADRPGRFDRPRAEELGVPVGPKFG 174
Query: 166 ----GDEIKKLKSSGTEITYTVTTP----EVAFTGDTMSDFIVDEANI-DVLRARILVME 216
G+ ++ + E V P ++A+T DT EA + A +L+ +
Sbjct: 175 RLHEGETVEAEDGTVVEPEQVVGPPRPGRKLAYTADTRP----REATVDAAADADLLIHD 230
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD--EIRR 268
+T+ DD ++ARD H+ E A++ K + L+H S+R+ D IRR
Sbjct: 231 ATFADD--MADRARDTAHSTGREAGSIADRANAKRLALVHISSRYAADPRPIRR 282
>gi|409723418|ref|ZP_11270668.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|448722112|ref|ZP_21704651.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|445790103|gb|EMA40773.1| ribonuclease Z [Halococcus hamelinensis 100A6]
Length = 309
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 36/247 (14%)
Query: 43 FDIGRCPSRAL---SQNF----LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + S F +F++H H DH+ GLP T R +P T+ P
Sbjct: 35 FDCGEGTQRQMMRFSTGFGVSHVFLTHLHGDHVLGLPGLTQTFDFNDREEPLTVHTPPGT 94
Query: 95 KEDVEQLFEV-HRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV 153
K VE L V R + H G D V+AF+T H QS GY +
Sbjct: 95 KRAVENLVGVTGARPGYPVRVHEA---HPGATVLRNDDYEVRAFETDHRTQSVGYALVED 151
Query: 154 KQKLKQEY-----LGLP-GDEIKKL-------KSSGTEI-TYTVTTPE-----VAFTGDT 194
++ + + LG+P G + +L GT + V PE + +TGDT
Sbjct: 152 DRRGRFDRERAVELGVPEGPKFSRLHRGESVEAEDGTTVDPEQVVGPERPGRTLVYTGDT 211
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
EA D A +L+ E+T+ +D T ++A GH+ + E A++ + K + L
Sbjct: 212 RPTGATVEAATD---ADLLIHEATFAEDRT--DRAGSTGHSTARQAAEIAKRADAKRLAL 266
Query: 255 IHFSARH 261
H S+R+
Sbjct: 267 THLSSRY 273
>gi|403668163|ref|ZP_10933440.1| ribonuclease Z [Kurthia sp. JC8E]
Length = 318
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 105/238 (44%), Gaps = 42/238 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R P TI P+ IKE V E+ R+ + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFLGGDTPLTIYGPTGIKEWV----EMTNRLTGTHLTYP 114
Query: 117 LVGLDV-------GEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL--------KQEY 161
+ ++V E+FC+ L HVI G Y V+QK K
Sbjct: 115 IHFVEVTDGVVFEDEQFCVTAKLL------EHVIPCYG---YRVEQKPLSGALDLEKAIS 165
Query: 162 LGLP---------GDEIKKLKSSGTEITYTVT-TPEVAFTGDTMSDFIVDEANIDVLR-A 210
LG+P E +L+ T + VT P FT + D E+ ++ + A
Sbjct: 166 LGVPKGPLLGQLKAGEAVRLEDGRTVYSEDVTGAPVQGFTVTILGDTRFCESAAELAQNA 225
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
IL+ E+T+ D++T A YGH+ + AE+ +LL H SAR +I R
Sbjct: 226 TILIHEATF--DASTANLASQYGHSTNVDAATIAEQANVDTLLLNHISARFLKHDIER 281
>gi|124027542|ref|YP_001012862.1| metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
gi|123978236|gb|ABM80517.1| Metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
Length = 302
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP + + G+ K P ++ P + + + F R + L
Sbjct: 58 IFITHLHGDHFFGLPGLLQSMGMLGRKTPLLVAGPRGLYGFLREAFRASRWLPGFPLY-- 115
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGL-PGDEIK 170
+ L+ GE+ + L V++F H I + GY + ++K K LG+ PG +
Sbjct: 116 VAELEPGEKLVLPSGLEVESFPVSHTIPAMGYRLVEPRRKPRINIEKARRLGIEPGPLLA 175
Query: 171 KLKSSGTEITYT--VTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVMEST 218
KL+ G +T + PE + +TGDT V EA + A +L+ ++T
Sbjct: 176 KLQ-RGEPVTVAGRIVRPEEVVEEQPRAVIVYTGDTRPCPTVVEAARN---ATVLIHDAT 231
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ S+ +A + GH+ + A + + ++L H SAR++ +
Sbjct: 232 FT--SSMAREAYEQGHSTARDAARAASTADARLLVLFHISARYETPD 276
>gi|403384070|ref|ZP_10926127.1| ribonuclease Z [Kurthia sp. JC30]
Length = 313
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 107/235 (45%), Gaps = 36/235 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R P TI P +KE V + + + L +
Sbjct: 59 VFITHLHGDHIFGLPGFIGSRSFLGGNTPLTIYGPKGLKEWVT----MTNTVTGTHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL--------KQEYLGLP-G 166
L ++V E + F V+A HV+ GY ++QK K LG+P G
Sbjct: 115 LHFVEVEEGVIYEDEQFIVRAMPLQHVVPCWGY---RIEQKALNGALDIDKATALGVPKG 171
Query: 167 DEIKKLKSSGTEITYTVTTPEVAFTGDTMSD----FIV---------DEANIDVLRARIL 213
+ KLKS G +IT T V + D +S+ FIV + A I A +L
Sbjct: 172 PLLGKLKS-GEDITLADGT--VVCSDDVLSEPKPGFIVTILGDTRKCENAIILAQDADVL 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V EST+ D+ T A YGH+ E E AE K +LL H SAR +I R
Sbjct: 229 VHESTF--DAATENLASQYGHSTNKEAAEVAEAAGVKTLLLNHLSARFLATDIAR 281
>gi|386002471|ref|YP_005920770.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
gi|357210527|gb|AET65147.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
Length = 305
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 35/251 (13%)
Query: 41 LAFDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPS 92
L FD G R + +S + +FI+H H DHI G+P + T + P I
Sbjct: 32 LLFDCGEGTQRQMMRAKTGMMSLDTIFITHHHADHILGIPGLLETMAFQGRRDPVTIAGP 91
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY 151
+V +LF R+ + + L++ +R+D + ++A +T H I S GY +
Sbjct: 92 PRTSEVVELFG---RLCYYSRKFPVRALELEPGDVLRRDGYEIEAVRTSHSIPSLGYCLR 148
Query: 152 SVKQ-----KLKQEYLGL-PGDEIKKLKSSGT-EITYTVTTPE-----------VAFTGD 193
+ + + LG+ PG +L+ G E+ PE + +TGD
Sbjct: 149 EDTRPGRFNRERASALGIPPGPLFGRLQRGGAVEVGGRTVRPEEVMGPPRPGRKIVYTGD 208
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T V+EA+ R L++ +DD + A + HT E AE+ + ++
Sbjct: 209 TRPTPEVEEAS----RGADLLIHDGSLDDG-MADWAAETMHTTAGEAARLAERAGARRLV 263
Query: 254 LIHFSARHKVD 264
L H S+R+ D
Sbjct: 264 LTHISSRYSDD 274
>gi|55379160|ref|YP_137010.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|448638251|ref|ZP_21676224.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|448655150|ref|ZP_21682002.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
gi|74552598|sp|Q5UZJ9.1|RNZ_HALMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|55231885|gb|AAV47304.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|445763500|gb|EMA14687.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|445765599|gb|EMA16737.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
Length = 311
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 21 TSSIFVNRDGDYLLFDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFN 80
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R + I P+ + +++QL + + + + + G+ R + ++A +T
Sbjct: 81 ERERAIAIHTPAGTRGNIKQLIQANGTTPSFPVR--INEVSAGDVVLDRSEYEIRAIETA 138
Query: 141 HVIQSQGYVVYSVKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ +K K +E G+ PG + KL + E PE
Sbjct: 139 HRCASVGYVLDEDDRKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGP 198
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V EA+ D A +LV ++T+ +D E+A+ H+ E
Sbjct: 199 ARPGRRFVYTGDTLPTESVIEASED---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 253
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 254 DVARQAGASTLALTHISTRYAASADELVDEARDAFDG 290
>gi|344213174|ref|YP_004797494.1| metallo-beta-lactamase-like/ribonuclease Z [Haloarcula hispanica
ATCC 33960]
gi|343784529|gb|AEM58506.1| metallo-beta-lactamase-like / ribonuclease Z [Haloarcula hispanica
ATCC 33960]
Length = 309
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 19 TSSIFVNRDGDYLLFDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFN 78
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R + I P+ + +++QL + + + + + G+ R + ++A +T
Sbjct: 79 ERERAIAIHTPAGTRGNIKQLIQANGTTPSFPVR--INEVSAGDVVLDRSEYEIRAIETE 136
Query: 141 HVIQSQGYVVYSVKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ +K K +E G+ PG + KL + E PE
Sbjct: 137 HRCASVGYVLDEDDRKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHDGETIQPEAVVGP 196
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V EA+ D A +LV ++T+ +D E+A+ H+ E
Sbjct: 197 ARPGRRFVYTGDTLPTESVIEASED---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 251
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 252 DVARQAGASTLALTHISTRYAASADELVDEARDAFDG 288
>gi|448664433|ref|ZP_21684236.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
gi|445775078|gb|EMA26092.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
Length = 311
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 21 TSSIFVNRDGDYLLFDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFN 80
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R +P + P+ + +++QL + + + + + G+ R + ++A +T
Sbjct: 81 ERERPIAVHTPAGTRGNIKQLIQANGTTPSFPVR--INEVSAGDVVLDRPEYEIRAIETA 138
Query: 141 HVIQSQGYVVYSVKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ +K K +E G+ PG + KL + E PE
Sbjct: 139 HRCASVGYVLDEDDRKGKFDREKAEEKFGIPPGPKYSKLHRGEPVEHEGETIQPEAVVGP 198
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V EA+ A +LV ++T+ +D E+A+ H+ E
Sbjct: 199 PRPGRRFVYTGDTLPKESVIEASEG---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 253
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 254 DVARQAGASTLALTHISTRYAASADQLVDEARDAFDG 290
>gi|407718055|ref|YP_006795460.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
gi|407241811|gb|AFT81461.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
Length = 321
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 36/249 (14%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G + + L FISH H DHI GLP ++++R G + +P TI P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGANKNEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ VE+ E R+ + L++ +V +++ E F V A K H I S G+ V
Sbjct: 96 ----KGVEEFVETSLRVSETRLSYPVVYVEIQEGVIFEDSTFKVIAAKMRHRITSWGFRV 151
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT--VTTPEVAFTGDTMSD---- 197
+ +KL+ L +P + +G +T + T F G+
Sbjct: 152 EEKDHPGELLVEKLRD--LNVPSGPVFGQLKAGKRVTLSDGRTLDGADFIGEAQKGRVVT 209
Query: 198 FIVD---EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
FI+D NI L +A +LV ESTY + A+ + H+ A + +
Sbjct: 210 FILDTRPNDNIATLAYQADVLVHESTYGASEEEAKMAKAHAHSTSVNAANVARRAHVDKL 269
Query: 253 LLIHFSARH 261
+L H SAR+
Sbjct: 270 ILTHLSARY 278
>gi|448375342|ref|ZP_21558908.1| ribonuclease Z [Halovivax asiaticus JCM 14624]
gi|445658896|gb|ELZ11709.1| ribonuclease Z [Halovivax asiaticus JCM 14624]
Length = 311
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 46/257 (17%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R L + + LF++HAH DH+ G+P + T R + I P
Sbjct: 33 LLFDAGEGTQRQLMRYGTGFDISELFVTHAHGDHVLGIPGLLQTMDFNDRERKLRIHAPR 92
Query: 93 CIKEDVEQL-FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ V +L F + H + +D G+ + V+AF+T H +S GY +
Sbjct: 93 GTRRQVRELAFSLDA---HISFPVEITDVDDGDVVYHGDEYEVRAFRTDHDTRSVGYALV 149
Query: 152 SVKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFT 191
++K + E LG+P G + +L G I TV PE + +T
Sbjct: 150 EDERKGRFDRERAEELGVPVGPKFSQLH-EGNSIELDDGTVVRPEQVVGEPRPGRSLVYT 208
Query: 192 GDTMSDF----IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
GDT I DE + +L+ ++T+ DD E+A D H+ + E A +
Sbjct: 209 GDTRPTARTVEIADEPD-------LLIHDATFADDR--AERAADTAHSTARQAAEIANRT 259
Query: 248 ENKAILLIHFSARHKVD 264
K + L+H S+R+ D
Sbjct: 260 GAKQLALVHLSSRYAGD 276
>gi|52080917|ref|YP_079708.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645126|ref|ZP_07999359.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
gi|404489801|ref|YP_006713907.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|76363374|sp|Q65HN6.1|RNZ_BACLD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|52004128|gb|AAU24070.1| RNase Z responsible for the maturation of the 3' end of tRNA
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348794|gb|AAU41428.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392935|gb|EFV73729.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
Length = 307
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 36/242 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP V++R + P T+ P IK +E +V + + +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYL---GL-PGDEI 169
LV ++GE D F V A H I + GY V V L E L G+ PG
Sbjct: 115 LVIKEIGEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RARIL 213
+KLK+ G +T + P+ VAF+GDT N+ L +A +L
Sbjct: 175 QKLKN-GETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRPC-----ENVKRLAEKADVL 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
+ E+T+ E A DY H+ + E A + K ++L H SAR++ + + VD
Sbjct: 229 IHEATFAKGDR--ELAGDYYHSTSEQAAETAREACAKKLILTHISARYQGENVLELVDEA 286
Query: 274 PA 275
A
Sbjct: 287 KA 288
>gi|448680389|ref|ZP_21690706.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
gi|445768833|gb|EMA19910.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
Length = 311
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 116/277 (41%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 21 TSSIFVNRDGDYLLFDCGEGTQRQMMRFGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFN 80
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R +P + P+ + +++QL + + + + + G+ R + V+A +T
Sbjct: 81 ERERPIAVHTPAGTRGNIKQLIQANGTTPSFPVR--INEVSAGDVVLDRSEYEVRAIETT 138
Query: 141 HVIQSQGYVVYS-------VKQKLKQEYLGLPGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ ++K + E+ PG + KL + E PE
Sbjct: 139 HRCASVGYVLDEDDRKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGP 198
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V EA+ A +LV ++T+ +D E+A+ H+ E
Sbjct: 199 ARPGRRFVYTGDTLPTESVIEASEG---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 253
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 254 DVARQAGASTLALTHISTRYAASADQLVDEARDAFDG 290
>gi|374990010|ref|YP_004965505.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
gi|297160662|gb|ADI10374.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
Length = 327
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 115/296 (38%), Gaps = 41/296 (13%)
Query: 1 MATKAKEEEKSGRGMQLQGYK----------VEGLSIAGHETCIIFPSLDLAFDIGRCPS 50
+ +A E+ RG + +K + G S A +T P L + D G C
Sbjct: 5 LKPQAGNPERLERGHPFRQWKTWKIPGTKFTLTGYSRANDKTFFHIPELRCSLDAGLCEG 64
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDH 110
R + + + ++H H DH L ++A+R + P VP VE ++H
Sbjct: 65 RQV--DTVLLTHTHHDHAKDLD-FLASRAGTDIYLPAEAVPY-----VESFLRASAELNH 116
Query: 111 SEL-------NHTLVGLDVGEEFCM-RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL 162
+ L G+ G+EF R+ V+ + H + GY V V + L +Y
Sbjct: 117 GAGYDPDLAGGYRLHGVRQGDEFTFGRRAHHVRVLECEHKVPCVGYAVSEVGKALLPQYE 176
Query: 163 GLP------------GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA 210
L G + + + G + V P A+ GDT V E N +
Sbjct: 177 ELRRSLVEEGRGGEFGRIMARRRKEGIKTEQDVRRPLFAYLGDTHVS--VFERNPWLFTY 234
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+++ E T++ DS + +A GHT S + E +L HFS RH ++
Sbjct: 235 PVVITECTFLHDSE-LGRADRVGHTVWSRLRPVVEAHPETLFVLTHFSLRHSDQDV 289
>gi|448630002|ref|ZP_21672813.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
gi|445756751|gb|EMA08110.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
Length = 311
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 21 TSSIFVNRDGDYLLFDCGEGTQRQMMHFGTGFAVDHLFVTHLHGDHVLGIPGLLQTWDFN 80
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R + I P+ + +++QL + + + + + G+ R + ++A +T
Sbjct: 81 ERERAIAIHTPAGTRGNIKQLIQANGTTPSFPVR--INEVSAGDVVLDRPEYEIRAIETE 138
Query: 141 HVIQSQGYVVYSVKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ +K K +E G+ PG + KL + E PE
Sbjct: 139 HRCASVGYVLDEDDRKGKFDREKAEEEFGIPPGPKYSKLHRGEAIEHEGETIQPEAVVGP 198
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V EA+ D A +LV ++T+ +D E+A+ H+ E
Sbjct: 199 PRPGRRFVYTGDTLPTESVIEASED---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 253
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 254 DVARQAGASTLALTHISTRYAASTDQLVDEARDAFDG 290
>gi|76801770|ref|YP_326778.1| hypothetical protein NP2254A [Natronomonas pharaonis DSM 2160]
gi|121708247|sp|Q3IRM5.1|RNZ_NATPD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|76557635|emb|CAI49218.1| ribonuclease Z [Natronomonas pharaonis DSM 2160]
Length = 308
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 27/226 (11%)
Query: 59 FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
FI+H H DHI GLP + T R +P ++ VPS + ++ L + ++ +
Sbjct: 58 FITHLHGDHILGLPGLLQTMDFNDREEPLSVYVPSGKQAELRDLIDTAAGAPSFPVH--V 115
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGLP-GDEIKK 171
G+ G+ D ++AF+T H +S GY + +K + E LG+P G + ++
Sbjct: 116 NGVSDGQVVVDADDYEIRAFETDHDARSLGYALIEASRKGRFDRERAEELGVPVGPKFQQ 175
Query: 172 LKSS-GTEI-TYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMEST 218
L + E+ TV PE V +TGDT D A +L+ ++T
Sbjct: 176 LHAGEAVELEDGTVVEPEQVVGDPRPGRRVVYTGDTRP---TDRTVTVAENADLLIHDAT 232
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ D+ ++A H+ +E + A + + + + L+H S+R+ D
Sbjct: 233 FATDN--ADRAARTAHSTAAEAADIASRADARRLALVHISSRYAGD 276
>gi|169828892|ref|YP_001699050.1| ribonuclease Z [Lysinibacillus sphaericus C3-41]
gi|168993380|gb|ACA40920.1| Ribonuclease Z [Lysinibacillus sphaericus C3-41]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R +P TI P +++ +EQ F + + + L +
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPVGLQQWIEQTFALSK----THLTYP 117
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK--------LKQEYLGLP-G 166
L ++V E F V A + HV+ G Y ++QK K + LG+P G
Sbjct: 118 LHFVEVQEGIVYEDACFTVYAKELRHVVPCYG---YRIEQKDLPGELLIEKAKDLGVPKG 174
Query: 167 DEIKKLK-------SSGTEITY--TVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
+ +LK +G I V + + FT + D E + + + A I+V E
Sbjct: 175 PLLGQLKRGHDVVLENGDVIQAKDVVASAKKGFTLTILGDTKYCEEAVQLSMGADIIVHE 234
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D TT + A +YGH E + A++ + +LL H SAR
Sbjct: 235 ATF--DGTTTDLAANYGHATNVEAAKVAQQAGAQYLLLNHLSAR 276
>gi|345559789|gb|EGX42921.1| hypothetical protein AOL_s00215g870 [Arthrobotrys oligospora ATCC
24927]
Length = 438
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 141 HVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD------- 193
H + S G++ +LK EY LPG E+K L+ G +ITY TP AF GD
Sbjct: 271 HTVPSVGFLFTQTSNRLKSEYRSLPGTELKNLRQQGVDITYQHRTPIFAFLGDGDHTSLL 330
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
+++V + + +++ E +++ +S QA HT ++ + + +
Sbjct: 331 GDPEWLVGNEDKGISGCPVVITECSFLYESHRA-QAVKTKHTIWKDLEPIVRRHRDTTWV 389
Query: 254 LIHFSARHKVDEI 266
L+HFS R+ EI
Sbjct: 390 LMHFSKRYGDGEI 402
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 17 LQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVA 76
Q +K+ G S A T + PSL+ D G + QN +FI+H H DH + Y
Sbjct: 71 FQQHKLIGRSRAAWHTSFLVPSLNAVLDAGVLIDDSRPQN-VFITHGHSDHSLAILAYCR 129
Query: 77 TRGLYRMKPPTIIVPS 92
R+ PP + VPS
Sbjct: 130 -----RITPPDVYVPS 140
>gi|421492448|ref|ZP_15939808.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455738357|ref|YP_007504623.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
gi|400193055|gb|EJO26191.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455419920|gb|AGG30250.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
Length = 305
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 35/251 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P + + Q E + S L
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGCEEPLTLFGP----QGLAQFVETALTLSGSYLTFP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
L +++ EE + D L V A+ H + S GY + Q+LK E G+PG
Sbjct: 115 LEIIEIDEEGVIYDDGQLKVSAYSLKHPVISYGYRIEEHDKPGALDAQRLKAE--GVPGG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G E+T + P+ + GDT + A A ++
Sbjct: 173 PWMQTLKQGGEVTLDDGRVICGADYLGEPQRGRHLVIFGDTAP---CENALKLAQNADVI 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
V+E+T D T E+A GH+ + A ++ HFS R+ ++ R +
Sbjct: 230 VLEATL--DGTMTEKANSRGHSSTVQTATLARDAGVGTLIATHFSGRYSEEDCERLLRGC 287
Query: 274 PAPLAGRVFAL 284
A VFA
Sbjct: 288 QAIFPATVFAF 298
>gi|410084875|ref|ZP_11281596.1| Ribonuclease Z [Morganella morganii SC01]
gi|409768520|gb|EKN52580.1| Ribonuclease Z [Morganella morganii SC01]
Length = 305
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 35/251 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P + + Q E + S L
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGCEDPLTLFGP----QGLAQFVETALTLSGSYLTFP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
L +++ EE + D L V A+ H + S GY + Q+LK E G+PG
Sbjct: 115 LEIIEIDEEGVIYDDGQLKVSAYSLEHPVISYGYRIEEHDKPGALDAQRLKAE--GVPGG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G E+T + P+ + GDT + A A ++
Sbjct: 173 PWMQTLKQGGEVTLDDGRVICGADYLGEPQRGRHLVIFGDTAP---CENALKLAQNADVI 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
V+E+T D T E+A GH+ + A ++ HFS R+ ++ R +
Sbjct: 230 VLEATL--DGTMTEKANSRGHSSTVQTATLARDAGVGTLIATHFSGRYSEEDCERLLRGC 287
Query: 274 PAPLAGRVFAL 284
A VFA
Sbjct: 288 QAIFPATVFAF 298
>gi|134045752|ref|YP_001097238.1| ribonuclease Z [Methanococcus maripaludis C5]
gi|166991484|sp|A4FXT9.1|RNZ_METM5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|132663377|gb|ABO35023.1| RNAse Z [Methanococcus maripaludis C5]
Length = 314
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 43/252 (17%)
Query: 43 FDIGRCPSR--------ALSQNFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G R + N +FISH H DH+ G+P +A +G R KP I P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHVLGIPGLLQSIAFQG--RTKPLNIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ ++ + V +N + E+ + V +F H + + YV
Sbjct: 91 EETAKMIKNILNVGYHSIDYPINVYEISSKTSEKIISTDNYDVFSFPVVHSVPAVAYVFR 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKSS-GTEITYTVTTPE-----------VAFTGDT 194
VK+ K LG+ G ++K+LK E+ + TPE V ++GDT
Sbjct: 151 QVKKPRMDLEKVNKLGIEIGPDLKRLKDGYNVELNGKIITPEDVTLPPKKGICVGYSGDT 210
Query: 195 M-----SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+ +DF+ + L+ IL+ E+T+ D T + A++ H+ + + + A++
Sbjct: 211 IPLNEFADFLKE------LKCTILIHEATF--DKTMDKNAKETLHSTVHDALNIAKRSGA 262
Query: 250 KAILLIHFSARH 261
++L H SAR+
Sbjct: 263 NTVILTHISARY 274
>gi|315646598|ref|ZP_07899716.1| ribonuclease Z [Paenibacillus vortex V453]
gi|315278241|gb|EFU41561.1| ribonuclease Z [Paenibacillus vortex V453]
Length = 309
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++RG + P I P IK +E + S + +T
Sbjct: 59 VFITHMHGDHIFGLPGLLSSRGAQGVTLPLAIYGPPGIKSFIETTLNI----SQSRVPYT 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
+ ++ D F V+A K H +S GY + S+ K + Y PG
Sbjct: 115 MEIMEHTGGVLFEDDSFRVEAAKLDHRAESYGYRIEEKDLPGSLDLKRLEAYGLKPGPLY 174
Query: 170 KKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
KLK G I + + TP+ V GDT V+ + A +LV E
Sbjct: 175 GKLKRGESVDLGGGRWIHASDVLLTPKKGRVVTILGDTRPCPGVESLSKG---ADLLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T++DD T E A +Y H+ + E AE+ K + L HFS+R+K
Sbjct: 232 ATFMDDLT--ELAHEYYHSTAKQAAEAAERAGVKTLFLTHFSSRYK 275
>gi|299537849|ref|ZP_07051138.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
gi|298726828|gb|EFI67414.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
Length = 310
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R +P TI PS +++ +EQ + + + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK--------LKQEYLGLPGD 167
L ++V E F + A + HV+ G Y ++QK K + LG+P
Sbjct: 115 LRFVEVQEGIIFEDAHFTIYAKELRHVVPCYG---YRIEQKDLPGELLIDKAQALGVPKG 171
Query: 168 EIKKLKSSGTEITY----------TVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
+ G +I V + FT + D E I + + A I+V E
Sbjct: 172 PLLGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D TT + A YGH E + A++ +LL H SAR
Sbjct: 232 ATF--DGTTTDLAASYGHATNVEAAKVAQQAGAHYLLLNHLSAR 273
>gi|222151400|ref|YP_002560556.1| hypothetical protein MCCL_1153 [Macrococcus caseolyticus JCSC5402]
gi|254808647|sp|B9E6P2.1|RNZ_MACCJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222120525|dbj|BAH17860.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 306
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 36/249 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FISH H DHI GLP + +R + K T+ P+ +K+ V+ + + S LN+
Sbjct: 59 IFISHLHGDHIFGLPGVLTSRSFQGGQDKKLTLYGPTGLKQFVDTVLTI----SCSHLNY 114
Query: 116 TL--VGLDVGEEFCMRK-DLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLP 165
L + +D G+EF + ++ V A K H I S GY + +K+KL E + P
Sbjct: 115 PLEIIEIDHGDEFVINDIEITVGALK--HGIPSFGYRIVMPDTAGNLIKEKLIAEGIA-P 171
Query: 166 GDEIKKLK------------SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARIL 213
G K+ K ++ T ++ F GDTM +E ++ A ++
Sbjct: 172 GPVYKEFKLHEQVTLNGKIYNTKDFKTAGKKGKKLVFFGDTMP--CENEVSL-AENADVV 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
V E TY+D VE + Y H+H+ +++ K +++ H S R+ +I R + +
Sbjct: 229 VHECTYLDGD--VELSHKYCHSHIDDVLSLVSSGSVKKLIINHVSNRYTTKDINRLLAEI 286
Query: 274 PAPLAGRVF 282
VF
Sbjct: 287 NTKTECEVF 295
>gi|424735601|ref|ZP_18164064.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
gi|422950258|gb|EKU44627.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
Length = 311
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R +P TI PS +++ +EQ + + + L +
Sbjct: 60 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSK----THLTYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK--------LKQEYLGLPGD 167
L ++V E F + A + HV+ G Y ++QK K + LG+P
Sbjct: 116 LRFVEVQEGIIFEDAHFTIYAKELRHVVPCYG---YRIEQKDLPGELLIDKAQALGVPKG 172
Query: 168 EIKKLKSSGTEITY----------TVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
+ G +I V + FT + D E I + + A I+V E
Sbjct: 173 PLLGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+T+ D TT + A YGH E + A++ +LL H SAR
Sbjct: 233 ATF--DGTTTDLAASYGHATNVEAAKVAQQAGAHYLLLNHLSAR 274
>gi|260778076|ref|ZP_05886969.1| ribonuclease Z [Vibrio coralliilyticus ATCC BAA-450]
gi|260606089|gb|EEX32374.1| ribonuclease Z [Vibrio coralliilyticus ATCC BAA-450]
Length = 326
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVE---QLFEVH 105
LS N+L FI+H H DH GLP +A+ G+ R P II+ P I+E +E Q ++H
Sbjct: 50 LSLNYLKAIFITHLHGDHCYGLPGLLASAGMNRRSDPLIIIAPKGIREWLEATMQFTKLH 109
Query: 106 RRMDHSELN-HTLVGLDVGE------EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLK 158
D ++ +L + +G+ E R F F + + Y+ + KL
Sbjct: 110 LPYDLQFVSAESLPSMTIGQFTISLCELEHRVPSFAYCFTESTI---KAYLDFD---KLA 163
Query: 159 QEYLGLPGDEIKKLKSSGTEITY---TVTTPEVAFTGDTMSDFIV--DEANIDVLR---- 209
Q+ G+P + G + + T+ + E + ++ D A+ ++L+
Sbjct: 164 QQ--GVPRGPLWGQLVKGQNVEHEGKTLISEEFTYLEHGPRKLVIAGDNADPELLKHLCE 221
Query: 210 -ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+LV ESTY + +QA+++GH++ + E+AE ++L HFS R+++
Sbjct: 222 ECHLLVHESTYAE--AFAKQAKEFGHSYGKLVAEFAEVAGIPNLILTHFSPRYQL 274
>gi|70726413|ref|YP_253327.1| hypothetical protein SH1412 [Staphylococcus haemolyticus JCSC1435]
gi|123660271|sp|Q4L6K4.1|RNZ_STAHJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|68447137|dbj|BAE04721.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 306
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P + +Q E R+ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTVIGPRGL----QQFIETTLRLSESHLNY 114
Query: 116 TLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PG 166
+ +++ F K + A H I S GY + S + LK +GL PG
Sbjct: 115 PITYIEIDNHFTYHHKGFSISAHLLNHGIPSYGYRIESPTTPGTIDVEALKS--IGLYPG 172
Query: 167 DEIKKLKS------------SGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARIL 213
+ +++KS S P ++ GDT ++ + + + + ++
Sbjct: 173 PKYQEVKSYDNFEHEGQVYNSDDFKGPAKPGPIISIFGDTKPC----QSELSIAKDSDVM 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
+ E+TY++ T+ A +Y H+H+ ++ E ++ K L+ H S R+ + I+
Sbjct: 229 IHEATYIEGEKTL--ANNYHHSHIEDVFELIKQANVKRCLITHLSNRYNHENIQ 280
>gi|217077798|ref|YP_002335516.1| metallo-beta-lactamase superfamily [Thermosipho africanus TCF52B]
gi|419760398|ref|ZP_14286677.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
gi|217037653|gb|ACJ76175.1| metallo-beta-lactamase superfamily, putative [Thermosipho africanus
TCF52B]
gi|407514501|gb|EKF49316.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
Length = 279
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 28/253 (11%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRGL 80
S A + T I + + FD G + L+ +F++H H+DHI GL + TR
Sbjct: 7 SKALYTTWIYYSPERILFDAGEGVATLLNNKIYAIKHIFLTHGHVDHISGLWALINTRNN 66
Query: 81 Y---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS-ELNHTLVGLDVGEEFCMR---KDLF 133
R K I P K +E+ ++M+ N + L G+ +R + +
Sbjct: 67 AMGDREKELNIYYPIGNK-GIEEYLRFIKKMNSDLRFNLNVFPLKDGQIVYLREGNQPKY 125
Query: 134 VKAFKTYHVI--QSQGYVVYSVKQKLKQEYLGLPGDEIKKL--KSSGTEITYTVTTPEVA 189
+KAF H +S GY +Y V+++LK+E+ L EI +L K ++ +
Sbjct: 126 IKAFSVVHTYSEKSFGYHLYEVRKRLKKEFQSLSQKEIAELSRKYGSDYVSEKFEKKILT 185
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFE 248
+GDT +++ + DV IL E T+ ++ R Y H L +I++ + +
Sbjct: 186 VSGDT---YLLKKE--DVFDTDILFHECTFFK-----KEDRKYKNHAVLEDIIDLIKDTK 235
Query: 249 NKAILLIHFSARH 261
K ++L H S R+
Sbjct: 236 IKTLILYHISGRY 248
>gi|15897910|ref|NP_342515.1| hypothetical protein SSO1043 [Sulfolobus solfataricus P2]
gi|284173568|ref|ZP_06387537.1| hypothetical protein Ssol98_02780 [Sulfolobus solfataricus 98/2]
gi|384434465|ref|YP_005643823.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
gi|41017578|sp|Q97Z88.1|RNZ_SULSO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13814227|gb|AAK41305.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602619|gb|ACX92222.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
Length = 291
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 36/222 (16%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
ISH H DH+ GL +A+ GL R + I+ P +K+ + FE +S+ N +
Sbjct: 59 ISHMHGDHVFGLLGVIASMGLLDRKETLYILGPRKLKDFLYTSFE------YSKFNPSF- 111
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDE------IKKL 172
++ + + +++ + FKT H I+SQGY++ K ++K + L ++ I+KL
Sbjct: 112 KIEFIDNYN-DENITISTFKTCHTIESQGYLIME-KDRVKIDEEKLEKEKIRDWRVIRKL 169
Query: 173 KSSGT-EITYTVTTPE----------VAFTGDTM-SDFIVDEANIDVLRARILVMESTYV 220
K T E + PE VA+TGDTM +VD V IL+ +ST++
Sbjct: 170 KEGKTVEYNGKLLKPEDYLVIKRGSKVAYTGDTMPCQSVVDS----VKGVDILIHDSTFL 225
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
D+ + A YGH+++++ + A + K + L H S R++
Sbjct: 226 DEPS----AYTYGHSNVTDAAKIALEASVKLLALTHISPRYE 263
>gi|227431959|ref|ZP_03913979.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352244|gb|EEJ42450.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 318
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 44/253 (17%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G + + L FI+H H DHI GLP ++++R G + +P TI P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+KE V+ R+ + L++ + +D+ E F V A H I++ G+ V
Sbjct: 96 KGVKEFVQTAL----RISETRLSYPIEYVDLTEGVIFEDHTFQVVAAPMRHRIETWGFRV 151
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA------FTGDTMSD 197
+ KLKQE +P + +G TVT PE F G
Sbjct: 152 IEKDHPGELLVDKLKQE--NIPSGPVYGQLKAGK----TVTLPEGRIVNGHDFIGKAQKG 205
Query: 198 FIVD-------EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
IV N++ L A +LV ESTY + A+ + H+ + A +
Sbjct: 206 RIVTLILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAH 265
Query: 249 NKAILLIHFSARH 261
++L H SAR+
Sbjct: 266 VNKLVLTHLSARY 278
>gi|146283279|ref|YP_001173432.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
gi|145571484|gb|ABP80590.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
Length = 337
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 28/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+ I+H H DH GLP +A+ G+ R P TII P I+ V + + EL+ H
Sbjct: 60 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 119
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIK 170
+ LD MR ++A + H + GY + + E+ G+P +
Sbjct: 120 AVETLDEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPRLDIERLEHDGVPRGPLW 175
Query: 171 KLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
+ G +I +++ + + GD ++ EA D A++LV E+
Sbjct: 176 GQLARGFDIEHEGRVLRSHDYLSFSRSPRRIVVGGDNDRPDLLAEACRD---AQLLVHEA 232
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
TY ++ + D+GH+ + + +A+ ++L HFSAR++
Sbjct: 233 TYT-EAVANDARNDFGHSTAATVARFAQAVGLPNLVLTHFSARYQ 276
>gi|218132320|ref|ZP_03461124.1| hypothetical protein BACPEC_00178 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992835|gb|EEC58836.1| ribonuclease Z [[Bacteroides] pectinophilus ATCC 43243]
Length = 304
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 34/248 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ L I+H H DHI GLP + T G R +P TII P + + V L R+ EL
Sbjct: 56 DILCITHFHADHISGLPGLLLTMGNADRTEPLTIIGPKGLTKVVNAL-----RVIAPELP 110
Query: 115 HTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGLP 165
+ + L+ +E + AFK H + GY V ++V+Q + + G+P
Sbjct: 111 FEIRCIELENPQEHFELSGYIIDAFKVNHAVTCYGYSVSIARTGRFNVEQAVAR---GIP 167
Query: 166 GDEIKKLKSSGT-EITYTVTTPEVAFTGDTMSD----FIVDEANIDVLR-----ARILVM 215
+L+ T E V TP++ G++ + D + + A + +
Sbjct: 168 KSCWNRLQHGQTVESDGNVYTPDMVM-GESRKGIKVTYCTDSRPVKAIAENASGADLFIC 226
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS---ARHKVDEIRRAVDA 272
E Y D+ AR Y H SE + A++ K + L H+S R K + IR A D
Sbjct: 227 EGMYGDNDKD-GNARKYKHMTFSEAAKLAKEAGVKQMWLTHYSPSLVRPK-EYIRSATDI 284
Query: 273 VPAPLAGR 280
PA AG+
Sbjct: 285 FPATRAGK 292
>gi|385806031|ref|YP_005842429.1| ribonuclease Z [Fervidicoccus fontis Kam940]
gi|383795894|gb|AFH42977.1| ribonuclease Z [Fervidicoccus fontis Kam940]
Length = 261
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 44/233 (18%)
Query: 41 LAFDIGRCPSRALSQN--------FLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ DIG R+L +N + ISH H DHI GLP + T + R + +II P
Sbjct: 34 ILLDIGEGSQRSLIKNGIGVNRIDHILISHLHGDHIFGLPGIIQTMSMEGRERKLSIISP 93
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQGYVV 150
E +E++ ++ +L + + E + + + V FKT H I+S GY++
Sbjct: 94 ----EGIEKILNAASQITSYQLEFPIEIIKPEGEISLEQYISVYPFKTCHTNIESFGYII 149
Query: 151 YSVKQ-KLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR 209
+ K K+E L A+TGDT +E +
Sbjct: 150 KAFGTGKEKKERFSL------------------------AYTGDTAP---CEELIEKIKG 182
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +L+ +ST+ DS+ VE+A +GH+ S + A+ K+++L H S R+
Sbjct: 183 ADVLIHDSTF--DSSMVEKAIAFGHSTSSIAAKVAKMAGVKSLILFHISNRYN 233
>gi|261406217|ref|YP_003242458.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
gi|261282680|gb|ACX64651.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
Length = 309
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP +++RG + P TI P IK +E + S + +T
Sbjct: 59 VFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKVFIETTLSI----SQSRVPYT 114
Query: 117 LVGLD-VGEEFCMRKDLFVKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
+ ++ G + V++ K H +S GY V S+ K +Y PG
Sbjct: 115 MEVIEHTGGVLFEDDNFLVESAKLDHRAESYGYRVVEKDLPGSLDLKRLADYGLKPGPLY 174
Query: 170 KKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
KLK G I + + TP+ V GDT V+ D A +LV E
Sbjct: 175 GKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDTRPCAGVEALAKD---ADLLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+++D + E A +Y H+ + E A++ KA+ L HFS+R+K
Sbjct: 232 ATFMEDLS--ELAHEYYHSTAKQAAEAAKRAGVKALFLTHFSSRYK 275
>gi|254167734|ref|ZP_04874584.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289597097|ref|YP_003483793.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623262|gb|EDY35827.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289534884|gb|ADD09231.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 45/253 (17%)
Query: 41 LAFDIGRCPSRAL---SQNFL-----FISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPS 92
L FD G R + + +F+ FI+H H DH GL + T L K P I
Sbjct: 35 LLFDCGEGTQRQMMHTNMSFMKIKRIFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGP 94
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDV-GEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
D+ F + + + +V ++ G E D VK KT H + S + Y
Sbjct: 95 ERTIDILTKF---LNIGYYSPSFKIVLYELKGNESLDFGDYVVKVMKTKHPVPS---LAY 148
Query: 152 SVKQK-------LKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEVA----------FT 191
++K+K + + LGL ++KL+ +G +I Y +T EV+ ++
Sbjct: 149 AIKEKDMPRIDRNRAKALGLNSKILEKLRKNG-KIEYEGKEITIDEVSNGVRVGRKIVYS 207
Query: 192 GDT--MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
GDT M + I AN A +L+ E+T +S+ EQA YGH+ + + A+K
Sbjct: 208 GDTAPMEEMISFAAN-----ANVLIHEATV--ESSLEEQANQYGHSSARQAAKIAKKANV 260
Query: 250 KAILLIHFSARHK 262
A+LL+H S R+K
Sbjct: 261 DALLLVHISPRYK 273
>gi|329930824|ref|ZP_08284223.1| ribonuclease Z [Paenibacillus sp. HGF5]
gi|328934526|gb|EGG31031.1| ribonuclease Z [Paenibacillus sp. HGF5]
Length = 308
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP +++RG + P TI P IK +E + S + +T
Sbjct: 59 VFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKVFIETTLSI----SQSRVPYT 114
Query: 117 LVGLD-VGEEFCMRKDLFVKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
+ ++ G + V++ K H +S GY V S+ K +Y PG
Sbjct: 115 MEVIEHTGGVLFEDDNFLVESAKLDHRAESYGYRVVEKDLPGSLDLKRLADYGLKPGPLY 174
Query: 170 KKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
KLK G I + + TP+ V GDT V+ D A +LV E
Sbjct: 175 GKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDTRPCAGVEALAKD---ADLLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+++D E A +Y H+ + E A++ KA+ L HFS+R+K
Sbjct: 232 ATFMED--LAELAHEYYHSTAKQAAEAAKRAGVKALFLTHFSSRYK 275
>gi|296111867|ref|YP_003622249.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc kimchii IMSNU 11154]
gi|295833399|gb|ADG41280.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc kimchii IMSNU 11154]
Length = 314
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGPKGVKEYVQTAL----RISETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ +V ++ E F V K H I++ GY V + KL+QE +P
Sbjct: 115 YPIVYAELKEGVIFEDKTFRVIGAKMRHRIETWGYRVEEKDHPGELLVDKLRQE--NIPS 172
Query: 167 DEIKKLKSSGTEITYTVTTPE----------VAFTGDTMSDFIVD---EANIDVL--RAR 211
I +G VT P+ A + FI+D N+++L A
Sbjct: 173 GPIFGQLKAGK----VVTLPDGRVLDGQDYIGASQKGRVVTFILDTRPNDNVEILADHAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ESTY + AR + H+ A++ ++L H SAR+
Sbjct: 229 VLVHESTYGAGEEEAKMARAHAHSTSVTAANVAQRAHVDKLVLTHLSARY 278
>gi|330508890|ref|YP_004385318.1| ribonuclease Z [Methanosaeta concilii GP6]
gi|328929698|gb|AEB69500.1| ribonuclease Z [Methanosaeta concilii GP6]
Length = 305
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 39/253 (15%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + + N++F++H H DHI G+P + T R++P TI P
Sbjct: 32 LLFDCGEGTQRQMMRARTGMMRLNYIFLTHLHADHILGIPGLLETMAFQGRVEPITIAGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVV 150
+L E + + + N ++ L++ E ++ K V+A +T H + S GYV+
Sbjct: 92 I----HTARLVECFKSVCYFSRNFEVIALELSPEDVVKMKGYQVRAIETRHSVPSLGYVL 147
Query: 151 YSVKQKLKQ------EYLGLPGDEIKKLKSSGTEITY--TVTTPE-----------VAFT 191
Q+L + LG+P + G E+ V P+ V +T
Sbjct: 148 EE-DQRLGRFDRDAAISLGVPPGPLFGRLQHGHEVAVEGRVVQPQQVMGPPRPGRKVVYT 206
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT V++A A +L+ +S D +E A + H+ E E A + +
Sbjct: 207 GDTRPCRSVEDAGRG---ADLLIHDSALASD--MIEWAMETKHSTAKEAAELARRAGVRH 261
Query: 252 ILLIHFSARHKVD 264
++L H S+R+ D
Sbjct: 262 LILTHISSRYSED 274
>gi|381336943|ref|YP_005174718.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356644909|gb|AET30752.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 318
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 44/253 (17%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G + + L FI+H H DHI GLP ++++R G + +P TI P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+KE V+ R+ + L++ + +D+ E F V A H I++ G+ V
Sbjct: 96 KGVKEFVQTAL----RISETRLSYPIEYVDLTEGVIFEDHTFQVVAAPMRHRIETWGFRV 151
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA------FTGDTMSD 197
+ KLKQE +P + +G TVT P+ F G
Sbjct: 152 IEKDHPGELLVDKLKQE--NIPSGPVYGQLKAGK----TVTLPDGRIVNGHDFIGKAQKG 205
Query: 198 ----FIVD---EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
FI+D N++ L A +LV ESTY + A+ + H+ + A +
Sbjct: 206 RIVTFILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAH 265
Query: 249 NKAILLIHFSARH 261
++L H SAR+
Sbjct: 266 VNKLVLTHLSARY 278
>gi|423682887|ref|ZP_17657726.1| ribonuclease Z [Bacillus licheniformis WX-02]
gi|383439661|gb|EID47436.1| ribonuclease Z [Bacillus licheniformis WX-02]
Length = 307
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 36/242 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP V++R + P T+ P IK +E +V + + +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYLGL----PGDEI 169
LV ++ E D F V A H I + GY V V L E L PG
Sbjct: 115 LVIKEIEEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKQTGVSPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RARIL 213
+KLK+ G +T + P+ VAF+GDT N+ L +A +L
Sbjct: 175 QKLKN-GETVTLEDGRKIRGADFIGPPKKGRIVAFSGDTRPC-----ENVKKLAEKADVL 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
+ E+T+ E ARDY H+ + E A + K ++L H SAR++ + + V+
Sbjct: 229 IHEATFAKGDR--ELARDYYHSTSEQAAETARESCAKELILTHISARYQGENVLELVNEA 286
Query: 274 PA 275
A
Sbjct: 287 KA 288
>gi|254166986|ref|ZP_04873839.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623842|gb|EDY36404.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 45/253 (17%)
Query: 41 LAFDIGRCPSRAL---SQNFL-----FISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPS 92
L FD G R + + +F+ FI+H H DH GL + T L K P I
Sbjct: 35 LLFDCGEGTQRQMMHTNMSFMKIKRIFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGP 94
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDV-GEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
D+ F + + + +V ++ G E D VK KT H + S + Y
Sbjct: 95 DRTIDILTKFLT---IGYYSPSFKIVLYELKGNESLDFGDYVVKVMKTKHPVPS---LAY 148
Query: 152 SVKQK-------LKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEVA----------FT 191
++K+K + + LGL ++KL+ +G +I Y +T EV+ ++
Sbjct: 149 AIKEKDMPRIDRNRAKALGLNSKILEKLRKNG-KIEYEGKEITIDEVSNGVRVGRKIVYS 207
Query: 192 GDT--MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
GDT M + I AN A +L+ E+T +S+ EQA YGH+ + + A+K
Sbjct: 208 GDTAPMEEMISFAAN-----ANVLIHEATV--ESSLEEQANQYGHSSARQAAKIAKKANV 260
Query: 250 KAILLIHFSARHK 262
A+LL+H S R+K
Sbjct: 261 DALLLVHISPRYK 273
>gi|172056988|ref|YP_001813448.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
gi|254808638|sp|B1YLU8.1|RNZ_EXIS2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|171989509|gb|ACB60431.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
Length = 301
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 39/269 (14%)
Query: 33 CIIFPSLDLAFDIGRC--------PSRALSQNFLFISHAHMDHIGGLPMYVATR-GLYRM 83
++ P + FD G P + + +FI+H H DHI GLP +++TR L
Sbjct: 23 ALLHPKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGT 82
Query: 84 KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF---VKAFKTY 140
TI P IKE +E R+ + L + L ++V ++ F V+A +
Sbjct: 83 TLLTIFGPKGIKEWLEATL----RITGTYLRYPLDVIEVEAGQTYEQEGFHIHVEALE-- 136
Query: 141 HVIQSQGYVVYSVKQK-------LKQEYLGLP-GDEIKKLKSS------GTEITYT--VT 184
H + GY + ++K LKQ LG+P G +++K GTE T +
Sbjct: 137 HRFLAYGYRIEGQEEKGALHVEALKQ--LGVPSGPLYRQIKQKETFVFEGTEYQSTDFLG 194
Query: 185 TPEVAFTGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
P+ + D + E ++ + + +LV E+T+ D + A +GH+ + E
Sbjct: 195 EPKPGIKLAVLGDTVPCEGSLRLAEKVDVLVHEATFADSEQ--DHAGRFGHSTARQAAEI 252
Query: 244 AEKFENKAILLIHFSARHKVDEIRRAVDA 272
A K K +LL H SAR+ E R +A
Sbjct: 253 ALKAGVKKLLLTHISARYVDQEQRLEAEA 281
>gi|339490858|ref|YP_004705363.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc sp. C2]
gi|338852530|gb|AEJ30740.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc sp. C2]
Length = 314
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGPKGVKEYVQTAL----RISETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ +V ++ E F V K H I++ GY V + KL+QE +P
Sbjct: 115 YPIVYAELKEGVIFEDKTFRVIGAKMRHRIETWGYRVEEKDHPGELLVDKLRQE--NIPS 172
Query: 167 DEIKKLKSSGTEITYTVTTPE----------VAFTGDTMSDFIVD---EANIDVL--RAR 211
I +G VT P+ A + FI+D N+++L A
Sbjct: 173 GPIFGQLKAGK----VVTLPDGRVLDGQDYIGARQKGRVVTFILDTRPNDNVEILADHAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ESTY + AR + H+ A++ ++L H SAR+
Sbjct: 229 VLVHESTYGAGEEEAKMARAHAHSTSVTAANVAQRAHVDKLVLTHLSARY 278
>gi|298674167|ref|YP_003725917.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
gi|298287155|gb|ADI73121.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
Length = 304
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 37/260 (14%)
Query: 41 LAFDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + +S + +FI+H H DH+ G+P + T R +P I P
Sbjct: 32 LMFDCGEGAQQQMMRARTGMMSLSSIFITHFHADHVLGIPGLLQTMSFQGRTEPLYIYGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
E ++ ++ + + +L + + +++ + K+ + +KA KT H ++S GY +
Sbjct: 92 ----EKIDVFIQILTALGYCQLGYEIKTVELKPGDIIEKNGYHIKALKTEHGVKSIGYSL 147
Query: 151 YSVKQ-----KLKQEYLGL-PGDEIKKL-KSSGTEITYTVTTPE-----------VAFTG 192
K+ + K LG+ PG KL K + E+ PE V ++G
Sbjct: 148 VENKRPGKFDRDKAVSLGVPPGPLFSKLQKGNPVEVDGRTVHPEEVVGEPRPGRTVVYSG 207
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT V A+ L A +L+ + + +DDS + E A + H+ SE E A+K +
Sbjct: 208 DTRPCEDVFNAS---LEADVLIHDGS-LDDSQS-EWAAESMHSTASEAAELAKKAGVIKL 262
Query: 253 LLIHFSARHKVDEIRRAVDA 272
+L H S+R+ DE DA
Sbjct: 263 VLTHISSRYTEDESPLLNDA 282
>gi|347753276|ref|YP_004860841.1| ribonuclease Z [Bacillus coagulans 36D1]
gi|347585794|gb|AEP02061.1| Ribonuclease Z [Bacillus coagulans 36D1]
Length = 305
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R P T+ P IK V EV ++ + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGDGPLTVYGPKGIKAFV----EVSLKVSETRLKYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L +++ E D F V A + H I+S GY + + +LK+E + PG
Sbjct: 115 LEIIEIEEGTVFEDDRFTVCALRLDHGIESFGYRITEKDKPGALDADRLKKEGI-RPGPV 173
Query: 169 IKKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDV-LRARILV 214
+ LK T E ++ + +A GDT +EA I + A +LV
Sbjct: 174 YRLLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDTRP----NEAEIRLAANADLLV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T+ +S + A DY H+ ++ + A++ K +LL H SAR+
Sbjct: 230 HEATFNKESG--QMAHDYFHSTTADAAQTAKQAGAKRLLLTHISARY 274
>gi|448737743|ref|ZP_21719778.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
gi|445803299|gb|EMA53597.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
Length = 305
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 38/261 (14%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S + +F+SH H DH+ GLP T R + I P
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPP 90
Query: 93 CIKEDVEQLFEV-HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
K VE L V R + H + + +R++ + V+AF+T H +S GY +
Sbjct: 91 GTKSAVENLVGVTGARPGYPIRVHEVQPGGI----ALREEEYEVRAFETDHRTRSVGYAL 146
Query: 151 YSVKQK-----LKQEYLGLPGDEIKKLKSSGTEITY---TVTTPE-----------VAFT 191
+K + E LG+P + G + TV PE + +T
Sbjct: 147 VEDDRKGRFDRERAEELGVPAGPLFSELHEGNAVELDDGTVVDPEQVVGPPRPGRKIVYT 206
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT EA D A +LV E+++ +D + E+A GH+ + + A + + K
Sbjct: 207 GDTRPTGATVEAADD---ADLLVHEASFGEDRS--ERAGKTGHSTARQAADLATRADAKR 261
Query: 252 ILLIHFSARHKVDEIRRAVDA 272
+ L H S+R+ + R A +A
Sbjct: 262 LALTHVSSRYAGESDRLAAEA 282
>gi|163754440|ref|ZP_02161562.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
gi|161325381|gb|EDP96708.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
Length = 288
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 31/266 (11%)
Query: 22 VEGLSIAGHETCIIFPSLDLAFDIGR--CPS---RALSQNFLFISHAHMDHIGGLPMYVA 76
+ G S A + T L + FD G C + +A FISHA DH+ GL +
Sbjct: 5 IHGYSTALYATWYFIEELGILFDAGDGVCANLLGKAGKIKHAFISHADRDHLTGLLQF-- 62
Query: 77 TRGLYRMKPPTIIVPS-----CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD 131
L+ PTI P D F+ H + + + + F ++
Sbjct: 63 -NQLFAGLKPTIYYPKDAGSFPFLNDFFTKFDPHNKGTNWQ------AIKDKAIFSVKNS 115
Query: 132 LFVKAFKTYHVIQ-----SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE--ITYTVT 184
+ V+A + HV+Q S + V+ K+KLK +++ L +E+ +K + +T +
Sbjct: 116 IQVEAIENGHVVQPGLLKSLSFKVFETKRKLKSKFVNLNKEELINIKKEHGDHFLTNELK 175
Query: 185 TPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
++++GDT + N + IL+ E+T++ T +A H+ L E+ +
Sbjct: 176 RNILSYSGDTPIEDYERYHN-----SEILIHEATFMTKEETNTKAFKNKHSSLDEVFKMV 230
Query: 245 EKFENKAILLIHFSARHKVDEIRRAV 270
+ ++L HFS+R+ EI +
Sbjct: 231 ANIKIDKLILGHFSSRYDQHEIDNEI 256
>gi|420192253|ref|ZP_14698113.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
gi|394261464|gb|EJE06261.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
Length = 306
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
++ +++ ++ + F V+A H I S GY + +
Sbjct: 115 SITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVDALRDIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K SG P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKSG---------PIISIFGDTKP--CENEYKL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 NNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|448346776|ref|ZP_21535657.1| ribonuclease Z [Natrinema altunense JCM 12890]
gi|445631729|gb|ELY84956.1| ribonuclease Z [Natrinema altunense JCM 12890]
Length = 314
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFAVSHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHTPH 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ ++ L + +G G+ ++ ++AF+T H +S GY +
Sbjct: 93 GTRRQLKGLVNALDNRPSFPVRINEIG--AGDVAYRAEEYEIRAFETDHDTRSVGYALVE 150
Query: 153 VKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFTG 192
+K + E LG+P G E KL +G + TV PE + +TG
Sbjct: 151 DDRKGRFDRERAEELGVPVGPEFSKLH-AGESVELEDGTVVDPEQVVGDPRPGRTIVYTG 209
Query: 193 DTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT EA I+V +L+ ++T+ DD E+A D H+ + E A +
Sbjct: 210 DTRP----AEATIEVADDPDLLIHDATFADDR--AERAADTAHSTARQAAEIANRAGAAR 263
Query: 252 ILLIHFSARH 261
+ L+H S+R+
Sbjct: 264 LALLHLSSRY 273
>gi|374602225|ref|ZP_09675219.1| Rnz [Paenibacillus dendritiformis C454]
gi|374392094|gb|EHQ63422.1| Rnz [Paenibacillus dendritiformis C454]
Length = 311
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVH 105
R P + F+FI+H H DH+ GLP +++R + P T+ P+ + E +E F
Sbjct: 48 RSPLKLGKCEFIFITHLHGDHLFGLPGLLSSRAYQGGVDPLTVFGPAGLSEFMETAF--- 104
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ--KLKQEYL 162
R+ + L +TL ++ D F V A H + S GY V + + KL+ E L
Sbjct: 105 -RVSDTHLPYTLHLQEIEPGEIWSDDSFRVTALPLDHRVPSYGYRVQELARPGKLRIEVL 163
Query: 163 ---GL-PGDEIKKLKSS-------GTEITYTVTTPE------VAFTGDTMSDFIVDEANI 205
G+ PG KLK G I E VA GDT + A
Sbjct: 164 ERMGIAPGPVYGKLKRGEDVTLPDGRRIAAAAVLGEQIPGKTVAILGDTRP---CENAVR 220
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
A +LV E+T++++ + A +YGH+ ++ A K ++L HFS+R+K +E
Sbjct: 221 LAEGADVLVHEATFMENKRS--NAHEYGHSTAADAAAIALKAGAGKLVLNHFSSRYKEEE 278
>gi|357009736|ref|ZP_09074735.1| ribonuclease Z [Paenibacillus elgii B69]
Length = 322
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 45 IGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFE 103
I R P + LFI+H H DHI GLP +++R P TI P I+E VE
Sbjct: 46 ILRAPVKISKLEKLFITHLHGDHIYGLPGLMSSRSYQGGDTPFTIYGPVGIREFVETAL- 104
Query: 104 VHRRMDHSELNHT--LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK--- 156
R+ S L++ +V + EF + +D VKA H + S GY + QK
Sbjct: 105 ---RISDSHLSYQTKIVEFEEKVEFVLYEDEQFIVKAAPLVHRVDSYGYRIEEKPQKGKL 161
Query: 157 --LKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA--FTGDTMSDFIV---------DEA 203
K + LG+ + G +T T A F G + IV + A
Sbjct: 162 DAAKLKELGIASGPLYGKIKKGEAVTLEDGTVLEASRFIGPPVPGRIVTILGDTQPCEHA 221
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+A +LV E+T+ +D E A Y H+ + A++ K ++L H S+R++
Sbjct: 222 VTLARQADVLVHEATFAEDRK--ELAMQYDHSTAMDAARTAQEAGVKMLVLTHISSRYQD 279
Query: 264 DEIRR 268
E+ R
Sbjct: 280 AEVER 284
>gi|448342245|ref|ZP_21531197.1| ribonuclease Z [Natrinema gari JCM 14663]
gi|445626236|gb|ELY79585.1| ribonuclease Z [Natrinema gari JCM 14663]
Length = 314
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFAVSHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHTPH 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ ++ L + + VG G+ D ++AF+T H +S GY +
Sbjct: 93 GTRRQLKGLVNALDNRPSFPVRISEVG--DGDIAYRAADYEIRAFETDHDTRSVGYALVE 150
Query: 153 VKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFTG 192
++K + E LG+P G + KL +G + TV PE + +TG
Sbjct: 151 DERKGRFDRERAEELGVPVGPKFSKLH-AGESVELEDGTVVDPEQVVGDPRPGRTIVYTG 209
Query: 193 DTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT EA I+V +L+ ++T+ DD E+A D H+ + E A +
Sbjct: 210 DTRP----AEATIEVADEPDLLIHDATFADDR--AERAADTAHSTARQAAEIANRAGAAR 263
Query: 252 ILLIHFSARH 261
+ L+H S+R+
Sbjct: 264 LALLHISSRY 273
>gi|110667983|ref|YP_657794.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloquadratum
walsbyi DSM 16790]
gi|109625730|emb|CAJ52163.1| ribonuclease Z [Haloquadratum walsbyi DSM 16790]
Length = 304
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 34/235 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ +FISH H DH GLP + + R + I VP ++ + + +
Sbjct: 53 DAVFISHFHADHTLGLPGLIQALEMDERERSLDIYVPEQRRQRAIDM--ITGAYEWPSYP 110
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
+ G + E +D V FKT + S G+ SV++ KQE+L G+ PG
Sbjct: 111 VEIQGYESDEPAIHTEDYTVHPFKTPYTEHSHGF---SVQEASKQEFLVEKAQALGVDPG 167
Query: 167 DEIKKLKSSGTEITYTVTT--PE-----------VAFTGDTM-SDFIVDEANIDVLRARI 212
+ KL+ T T T PE + +TGDT SD IVD A+ A +
Sbjct: 168 PKYGKLQDGHTVETDDGDTIEPEDVLSDPMPGRKIVYTGDTRPSDAIVDAAS----NASL 223
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
L+ + + + ++A GH+ SE + A K ++ I L H S RH+ DE +
Sbjct: 224 LIYSAMFTE--AQAKRAHSTGHSTASEAAQVASKSNSEKIWLTHISPRHEGDEQK 276
>gi|421626628|ref|ZP_16067457.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
gi|408695899|gb|EKL41454.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
Length = 324
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 34/235 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGIPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVME 216
LK G I + T + GD ++ +A D A++L+ E
Sbjct: 177 GHLK-RGYNIEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELLADACKD---AQLLIHE 232
Query: 217 STYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 233 STYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|403673429|ref|ZP_10935726.1| Ribonuclease Z [Acinetobacter sp. NCTC 10304]
Length = 324
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 34/235 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGIPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVME 216
LK G I + T + GD ++ +A D A++L+ E
Sbjct: 177 GHLK-RGYNIEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLLADACKD---AQLLIHE 232
Query: 217 STYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 233 STYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|347549375|ref|YP_004855703.1| hypothetical protein LIV_1958 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982446|emb|CBW86444.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 306
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 38/230 (16%)
Query: 57 FLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
F+FI+H H DHI GLP +++R TI P I+E +E R+ + L +
Sbjct: 58 FIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGIREYIETSL----RLSGTRLTY 113
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ------KLKQEYLGLPGD 167
++ ++G ++F + A + H +QS GY +V KQ KLK + + PG
Sbjct: 114 KIIFAEIGPGVIFEDEMFAITADELEHGMQSFGYRIVEKDKQGALNAAKLKADGV-EPGP 172
Query: 168 EIKKLKSS-------GTEI--TYTVTTPE----VAFTGD---TMSDFIVDEANIDVLRAR 211
+KLK+ G EI + P+ ++ GD T S+F + E A
Sbjct: 173 VFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRLAE------NAD 226
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV E+T+ D + A +Y H+ + E A++ K ++L H S+R+
Sbjct: 227 VLVHEATFEGDKGKM--AAEYMHSTTVQAAELAKRAGVKKLILTHISSRY 274
>gi|290958472|ref|YP_003489654.1| hypothetical protein SCAB_40281 [Streptomyces scabiei 87.22]
gi|260647998|emb|CBG71105.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 330
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 105/286 (36%), Gaps = 55/286 (19%)
Query: 12 GRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGL 71
G G+ L GY S A +T P L + D G R + + ++H H+DH L
Sbjct: 32 GTGLTLTGY-----SRANDKTFFHLPELRCSVDAGLAEGRQVET--VLLTHTHLDHSKDL 84
Query: 72 PMYVATRG----LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH------------ 115
Y+A R +Y + ++ SELNH
Sbjct: 85 D-YLAARDAGVDIYLPAAAEPYAAAYLRAA-------------SELNHGAGFDASRAPDC 130
Query: 116 TLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI---- 169
L G+ G EF + R + V+ + H + GY K LK EY L +
Sbjct: 131 RLHGVRPGAEFSVGRRGEYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGR 190
Query: 170 ---------KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYV 220
++ K + + P AF GDT N + +++ E TY+
Sbjct: 191 AGEFGRIIAERRKEGPGTVDQEIRRPAFAFLGDTHPSVFA--RNPWLFDYPVVITECTYL 248
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
DD + +AR GHT SE+ E +L HFS RH E+
Sbjct: 249 DDER-LGRARQVGHTVWSELRPVVEAHPETLFVLTHFSLRHSDREV 293
>gi|259503099|ref|ZP_05746001.1| ribonuclease Z [Lactobacillus antri DSM 16041]
gi|259168965|gb|EEW53460.1| ribonuclease Z [Lactobacillus antri DSM 16041]
Length = 309
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P TI P IK V +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKRFVTTALQV----SESRLSYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDEI 169
L V +D E + V A K H I GY V Q K L +P +
Sbjct: 115 LHFVEIDHEGEVFHDQGFTVTAKKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPV 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+G E+T + P+ V GDT E D A ILV
Sbjct: 175 YGQLKAGKEVTLADGRTVNGRDFIGAPQKGRIVTICGDTRKTANAVELARD---ADILVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + AR Y H+ + E A++ K +LL H SAR+
Sbjct: 232 ESTFAKDEAKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|328957585|ref|YP_004374971.1| ribonuclease Z [Carnobacterium sp. 17-4]
gi|328673909|gb|AEB29955.1| ribonuclease Z [Carnobacterium sp. 17-4]
Length = 312
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK V +V + + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDGPLTIYGPVGIKNYV----QVCLKTSGTVLKYP 114
Query: 117 LVGLDVGEEFCMRKDLFVKAF--KTYHVIQSQGYVV-----YSVKQKLKQEYLGLP-GDE 168
L ++ EE + +D + K K H IQS GY + + Q K + G+P G
Sbjct: 115 LHFHEIIEEGVIFEDRYFKVICRKLKHGIQSFGYRIEEADHQGMLQADKVKEAGIPFGPL 174
Query: 169 IKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIV------DEANIDVL---RARILVMES 217
KLK G IT T F G+T IV + +VL A ILV ES
Sbjct: 175 YGKLK-QGETITLKDGRTFNGKDFIGETQKGRIVTILGDTKKTKNNVLLAENASILVHES 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ D + ARDY H+ + E A++ ++L H SAR+
Sbjct: 234 TF--DGANRKMARDYNHSTNLDAAEVAKEANVAKLVLTHISARY 275
>gi|397772361|ref|YP_006539907.1| ribonuclease Z [Natrinema sp. J7-2]
gi|397681454|gb|AFO55831.1| ribonuclease Z [Natrinema sp. J7-2]
Length = 310
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P + T R +P I P
Sbjct: 29 LLFDAGEGTQRQMMRFGTGFAVSHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHTPH 88
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ ++ L + + VG G+ D ++AF+T H +S GY +
Sbjct: 89 GTRRQLKGLVNALDNRPSFPVRISEVG--DGDIAYRAADYEIRAFETDHDTRSVGYALVE 146
Query: 153 VKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFTG 192
++K + E LG+P G + KL +G + TV PE + +TG
Sbjct: 147 DERKGRFDRERAEELGVPVGPKFSKLH-AGESVELEDGTVVDPEQVVGDPRPGRTIVYTG 205
Query: 193 DTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT EA I+V +L+ ++T+ DD E+A D H+ + E A +
Sbjct: 206 DTRP----AEATIEVADEPDLLIHDATFADDR--AERAADTAHSTARQAAEIANRAGAAR 259
Query: 252 ILLIHFSARH 261
+ L+H S+R+
Sbjct: 260 LALLHISSRY 269
>gi|326693133|ref|ZP_08230138.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc argentinum KCTC 3773]
Length = 314
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 46/254 (18%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G + + L FISH H DHI GLP ++++R G + +P TI P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKHEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
IK+ V+ R+ + L++ LV +++ E F V A K H I + G+ V
Sbjct: 96 KGIKDFVQTAL----RVSETRLSYPLVYVELTEGVIFDDKTFRVIAAKMRHRIDTWGFRV 151
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPE-----------VAFTG 192
+ +KL+++ + G +LK+ VT P+ A G
Sbjct: 152 EEKDHPGELLVEKLREQNVP-SGPVFGQLKAG-----KRVTLPDGRILDGRDYIGAAQKG 205
Query: 193 DTMSDFIVD---EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
++ FI+D NI+VL A +LV ESTY + AR + H+ A +
Sbjct: 206 RVVT-FILDTRPNDNIEVLALNADVLVHESTYGAGDEEAKMARAHAHSTSVSAANTARRA 264
Query: 248 ENKAILLIHFSARH 261
++L H SAR+
Sbjct: 265 HVDKLILTHLSARY 278
>gi|310831449|ref|YP_003970092.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386633|gb|ADO67493.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
Length = 265
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 18/233 (7%)
Query: 32 TCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVP 91
T I P L L D G + + I+H H DHI + + K II
Sbjct: 20 TGIFIPELKLQLDAGYYFGSDIDN--ILITHGHADHIKDITSIIHNNT----KKVNIICA 73
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+K +E + +++ +N+ + + + K++ ++ F H ++ Y +
Sbjct: 74 KYLKPYLENYLHSYFQLNSLNMNNHTLNKKITWNNSI-KNIKIEMFPVKHSVKCVAYGII 132
Query: 152 SVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVL--- 208
++ KLK ++G E+ ++K T IT ++ E+ F D +D +++ +L
Sbjct: 133 TITNKLKTIFIGKSIKELIEIKKHNT-ITESIDNKEILFATD------LDHSSLKLLPFD 185
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ +++E T+ + VE AR+ H H +I +K+ +K L+IH S R+
Sbjct: 186 EYKNIIIECTFYSEEHLVE-ARNRYHLHWVDIEPIIKKYVHKNFLIIHPSPRY 237
>gi|417647087|ref|ZP_12296936.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
gi|329725436|gb|EGG61919.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
Length = 306
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
T+ +++ ++ + F V+A H I S GY + +
Sbjct: 115 TITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVEALRGIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYEL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 KNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|359393919|ref|ZP_09186972.1| Ribonuclease Z [Halomonas boliviensis LC1]
gi|357971166|gb|EHJ93611.1| Ribonuclease Z [Halomonas boliviensis LC1]
Length = 320
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 110/255 (43%), Gaps = 59/255 (23%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ I+H H DH GLP +A+ G+ R P TI+ P+ IK +E E + L T
Sbjct: 58 ILITHVHGDHCYGLPGILASAGMGGRKAPLTIVAPAGIKAWLEATCEATQLC----LPFT 113
Query: 117 LVGLDVGE----EFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP 165
L +D E EF + + V F+ H S Y K +KL Q+ G+P
Sbjct: 114 LEFIDSDELPSVEF---ESIAVTTFRLSHRAPSYAYGFTERKVDADLNIEKLTQK--GIP 168
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTM--SDFIV------------DEANIDVLR-- 209
+ G +I F G+ + DF++ D D+L
Sbjct: 169 RGPLWGQLKQGFDIE---------FAGEQLKSQDFLIFKNKPRKIMIAGDNDQPDLLMDA 219
Query: 210 ---ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK---- 262
A++LV E+TY ++ E+A D GH++ + +AE + ++L HFS R++
Sbjct: 220 CTGAQVLVHEATYTEE--MAEKAGDVGHSYGKLVAAFAESVQLPNLVLTHFSPRYQLNSN 277
Query: 263 ----VDEIRRAVDAV 273
+++IR+ +V
Sbjct: 278 ATPSIEDIRKEAQSV 292
>gi|317495985|ref|ZP_07954347.1| ribonuclease Z [Gemella morbillorum M424]
gi|316913889|gb|EFV35373.1| ribonuclease Z [Gemella morbillorum M424]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 31/239 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GL ++++R + TI P I++ V+Q + H LN
Sbjct: 59 IFISHLHADHILGLIGFLSSRNFLLDSKESGVTIYGPVGIRQFVKQ----NLLFTHCSLN 114
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLG-LPG 166
+ ++ E C+ K + V + H I+ GY + QK K + LG +PG
Sbjct: 115 FDVKYVEFSSEQCIIDNKTVVVSTYPLNHNIECFGYKIIFKNQKGSLDAEKLKKLGIMPG 174
Query: 167 DEIKKLKSSGT----EITYTVT--------TPEVAFTGDTMSDFIVDEANIDVLRARILV 214
K +K + E TY + E+A DT + N V + I++
Sbjct: 175 PFYKNIKEQDSFVYNETTYNSSEFLSEDKPKKEIAIIPDTR---YFPQLNEFVKNSDIII 231
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
E TY+D+ AR H + +I + + K + L H SAR+ VD + V+ +
Sbjct: 232 SECTYLDEK-DAHHARKNYHLSILDIENFITESTVKRLFLTHISARYDVDTEKSVVEKI 289
>gi|352104841|ref|ZP_08960561.1| ribonuclease Z [Halomonas sp. HAL1]
gi|350598626|gb|EHA14737.1| ribonuclease Z [Halomonas sp. HAL1]
Length = 320
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 39/232 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP +A+ G+ R P TI+ P+ IK +E E + L
Sbjct: 58 IFITHVHGDHCYGLPGILASAGMGGRQAPLTIVAPAGIKAWLEATCEATQLC----LPFV 113
Query: 117 LVGLDVGE----EFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP 165
L +D E EF + + V ++ H S Y K KL Q+ G+P
Sbjct: 114 LDFIDSDELPSVEF---ESITVTTYRLSHRAPSYAYGFTETKVDAALDVDKLAQK--GIP 168
Query: 166 -GDEIKKLKS------------SGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARI 212
G +LK S + + +V GD ++ EA + A++
Sbjct: 169 RGPLWGQLKQGFDVEFEGEQLKSHDYLLFKNKPRKVVIAGDNDQPDLLGEACVG---AQV 225
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
LV E+TY ++ ++A D GH++ + +AE + ++L HFS R++++
Sbjct: 226 LVHEATYTEE--MAQKAGDVGHSYAKLVAAFAETVQLPNLVLTHFSPRYQLN 275
>gi|385803417|ref|YP_005839817.1| ribonuclease Z [Haloquadratum walsbyi C23]
gi|339728909|emb|CCC40090.1| ribonuclease Z [Haloquadratum walsbyi C23]
Length = 304
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 34/235 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ +FISH H DH GLP + + R + I VP ++ + + +
Sbjct: 53 DAVFISHFHADHTLGLPGLIQALEMDERERSLDIYVPEQRRQRAIDM--ITGAYEWPSYP 110
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
+ G + E +D V FKT + S G+ S+++ KQE+L G+ PG
Sbjct: 111 VEIQGYESDEPAIHTEDYTVHPFKTPYTEHSHGF---SIQEASKQEFLVEKAQALGVDPG 167
Query: 167 DEIKKLKSSGTEITYTVTT--PE-----------VAFTGDTM-SDFIVDEANIDVLRARI 212
+ KL+ T T T PE + +TGDT SD IVD A+ A +
Sbjct: 168 PKYGKLQDGHTVETDDGDTIEPEDVLSDPMPGRKIVYTGDTRPSDAIVDAAS----NASL 223
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
L+ + + + ++A GH+ SE + A K ++ I L H S RH+ DE +
Sbjct: 224 LIYSAMFTE--AQAKRAHSTGHSTASEAAQVASKSNSEKIWLTHISPRHEGDEQK 276
>gi|305681289|ref|ZP_07404096.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
gi|305659494|gb|EFM48994.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
Length = 307
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 31/231 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP ++++R P TI P I E V ++ H
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLE 115
Query: 117 LVGLD-VGEEFCMRKDLFVKAFKTY-HVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
+V LD GE R D + T H +QS Y + Q + + L PG
Sbjct: 116 VVELDHAGEVPLGRDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 169 IKKLKSSGTEITYTVTT--------------PEVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK G +IT T P++ GDT F+ A+ A ++V
Sbjct: 176 YGQLKR-GEDITLDNGTVLRSADFVGPPQSGPDIVLFGDTR--FVPGHADF-AAGADLMV 231
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
E+TY + ++A+ Y H+ ++ E A + K ++L HFSAR+ DE
Sbjct: 232 HEATYGPEYP--DKAQKYFHSTTTQAAELARQAGVKKLVLTHFSARYDTDE 280
>gi|374633802|ref|ZP_09706167.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
gi|373523590|gb|EHP68510.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
Length = 292
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 44/250 (17%)
Query: 53 LSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS 111
+S + I+H H DH+ GLP + T +Y R + ++ P IKE +E+ FE+
Sbjct: 51 MSIKLVAITHLHADHVLGLPPLIQTMSMYGRKEKLYVMGPPGIKELLEESFEL------- 103
Query: 112 ELNHTLVGLDVGEEFC---MRKDLFVKAFKTYHVIQSQGYVVYSVK------QKLKQEYL 162
T D EF ++ V F+T HV+ SQGY++ +KL++E
Sbjct: 104 ----TFFKPDFPLEFVDELTLGEIHVTPFRTCHVVPSQGYLIQERDSSNLDVEKLRRE-- 157
Query: 163 GLPGDEIKKLKSSGTEITYTVTT--PE----------VAFTGDTMSDFIVDEANIDVLRA 210
G+ I + G E+ + T PE +A+TGDT +E V
Sbjct: 158 GINDWRIMRTLKEGKEVHWEGRTLRPEDYLIKRRGLRIAYTGDTRP---CNEVIRAVRGV 214
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK--VDEIRR 268
+L+ +ST+ A +YGH+ E E A++ E + + LIH S+R++ + +++
Sbjct: 215 DLLLHDSTF----EAGVNAGEYGHSTSVEAAEVAKEAEVRRLALIHISSRYRDATELVKQ 270
Query: 269 AVDAVPAPLA 278
A P A
Sbjct: 271 AKRVFPMSFA 280
>gi|339495064|ref|YP_004715357.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338802436|gb|AEJ06268.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 335
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 28/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+ I+H H DH GLP +A+ G+ R P TII P I+ V + + EL+ H
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 117
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIK 170
+ LD MR ++A + H + GY + + E+ G+P +
Sbjct: 118 AVETLDEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPRLDIDRLEHDGVPRGPLW 173
Query: 171 KLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
+ G +I +++ + + GD ++ E D A++LV E+
Sbjct: 174 GQLARGFDIEHEGRVLRSHDYLSFSRSPRRIVVGGDNDRPDLLAETCRD---AQLLVHEA 230
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
TY ++ + D+GH+ + + +A+ ++L HFSAR++
Sbjct: 231 TYT-EAVANDARNDFGHSTAATVARFAQAVGLPNLVLTHFSARYQ 274
>gi|228476129|ref|ZP_04060837.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|314936370|ref|ZP_07843717.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|418619914|ref|ZP_13182725.1| ribonuclease Z [Staphylococcus hominis VCU122]
gi|228269952|gb|EEK11432.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|313654989|gb|EFS18734.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|374823477|gb|EHR87472.1| ribonuclease Z [Staphylococcus hominis VCU122]
Length = 306
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 33/237 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP T+I P+ + +Q E ++ S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTLIGPTGL----QQFIETALKLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
+ +++ F F V + H I S GY + + + L PG +
Sbjct: 115 PITYIEIDNNFTYHHHGFTVSSRLLNHGIPSYGYRIEAPTTPGTIDVTALKAIGLEPGPK 174
Query: 169 IKKLKSSGT-EITYTV-----------TTPEVAFTGDTMSDFIVDEANIDVLRARILVME 216
+++K T E + P V GDT D I A I++ E
Sbjct: 175 YQEVKMFDTFEYNNQIYLSKDFKGPAKPGPIVTIFGDTKP---CDNEYILAENADIMIHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK---VDEIRRAV 270
+TY++ + A +Y H+H+ ++ + K + H S R+ ++EI RA+
Sbjct: 232 ATYIEGDKIL--ANNYHHSHIDDVFRLIHQSNVKKSFITHLSNRYNLEDIEEINRAL 286
>gi|398811313|ref|ZP_10570114.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
gi|398080853|gb|EJL71646.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
Length = 319
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 23/224 (10%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GLP +A+ G+ R KP +I P + E FE R++ L + +
Sbjct: 62 ITHVHGDHCYGLPGLLASAGMNKRTKPLKLIAPLPVWE----WFEATRQLTDLHLPYEVE 117
Query: 119 GLDVGEEFCMRKDLFVKAFK--TYHVIQSQGYVVY--SVKQKLKQEYL---GLPGDEIKK 171
+D+ + + + V+ + H + S Y V + + +LK + L GLP +
Sbjct: 118 HVDLENQALVYEAPGVRIERHLLRHRVPSHAYRVQVETRRVRLKADALRAAGLPPGPAWR 177
Query: 172 LKSSGTEITYTVTTPEVAFTGDTMSDFIV-----DEANIDVLR-----ARILVMESTYVD 221
+G ++ + A +T D V D A +LR A++LV E+T+
Sbjct: 178 ALQTGEDVPFNGDVLRSADYTETQVDTAVAVLGGDNAEPALLRDACRGAQLLVHEATFTQ 237
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
D+ + H+ + E+A+ E ++L HFSARH+ +E
Sbjct: 238 DALD-KVGPGPMHSSARMLAEFAQAVEVPNLVLTHFSARHQNEE 280
>gi|417549979|ref|ZP_12201059.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|417566530|ref|ZP_12217402.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|421806928|ref|ZP_16242790.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
gi|395552202|gb|EJG18210.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|400387947|gb|EJP51020.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|410417471|gb|EKP69241.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
Length = 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 46/241 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFI----------------VDEANIDVLR-A 210
LK + F G T+ DFI E +D + A
Sbjct: 177 GHLKRGYN----------IEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELLVDACKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
++L+ ESTY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A
Sbjct: 227 QLLIHESTYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 270 V 270
+
Sbjct: 285 I 285
>gi|193077819|gb|ABO12693.2| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ATCC 17978]
Length = 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 46/241 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFI----------------VDEANIDVLR-A 210
LK + F G T+ DFI E +D + A
Sbjct: 177 GHLKRGYN----------IEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELLVDACKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
++L+ ESTY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A
Sbjct: 227 QLLIHESTYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 270 V 270
+
Sbjct: 285 I 285
>gi|418325402|ref|ZP_12936608.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
gi|365228004|gb|EHM69189.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
Length = 306
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 48/241 (19%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
N +FI+H H DHI GLP + +R KP TII P I+ +E + + S L
Sbjct: 57 NHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHL 112
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------------------- 152
N+ + +++ ++ + F V+A H I S GY + +
Sbjct: 113 NYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVEALRDIGLEPG 172
Query: 153 -----VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANI 205
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 173 PKYQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYEL 221
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE
Sbjct: 222 -AKNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDE 278
Query: 266 I 266
+
Sbjct: 279 V 279
>gi|261403021|ref|YP_003247245.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
gi|261370014|gb|ACX72763.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
Length = 318
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 40/238 (16%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI G+P + + G + R K I P K+ ++ E ++ +N
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSLGFFGREKELKIFGPEGTKDIIKNALE----FGYNYIN 112
Query: 115 HTLVGLDVGEE---FCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLP- 165
+ + ++ E+ +++D + + + T H + S Y+ +K+ K LG+
Sbjct: 113 YPIKVYEIKEKNPAIVLKEDDYEIITYPTKHTVPSYAYIFREIKKPRLDVKKALKLGVKV 172
Query: 166 GDEIKKLK------SSGTEITYT--VTTPE-----VAFTGDTM-----SDFIVDEANIDV 207
G ++KKLK + I Y V P +A++GDT+ F+ D
Sbjct: 173 GPDLKKLKEGEAVKTENGSIVYPKDVLLPPKKGFCLAYSGDTLPLEDFGQFLRD------ 226
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
++ +L+ E+T+ D + AR+ HT + E V A K ++L H SAR+ +E
Sbjct: 227 IKCDVLIHEATF--DDQCRDTARENMHTTIGEAVNIARLAHVKVLILTHISARYDKEE 282
>gi|225022017|ref|ZP_03711209.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
gi|224945214|gb|EEG26423.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
Length = 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP ++++R P TI P I E V ++ H
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLK 115
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
+V LD E + +D + V+ H +QS Y + Q + + L PG
Sbjct: 116 VVELDHAGEVPLGQDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 169 IKKLKSSGTEITYTVTT--------------PEVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK G +IT T P++ GDT F+ A+ A ++V
Sbjct: 176 YGQLKR-GEDITLDNGTVLRSADFVGPPQSGPDIVLFGDTR--FVPGHADF-AAGADLMV 231
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
E+TY + ++A+ Y H+ ++ E A + K ++L HFSAR+ DE
Sbjct: 232 HEATYGPEYP--DKAQKYFHSTTTQAAELARQAGVKKLVLTHFSARYDTDE 280
>gi|299769381|ref|YP_003731407.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
gi|298699469|gb|ADI90034.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
Length = 324
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 46/233 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L+++L
Sbjct: 61 ITHIHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLSYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEVIKPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQTLTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFIV------------DEANIDVLR-----A 210
LK V F G T+ DFI D ++L A
Sbjct: 177 GHLKRG----------YNVEFEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELLADACKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
++L+ ESTY+ T +++ + H+ + E+AE+ ++L HFS RH+
Sbjct: 227 QLLIHESTYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQ 277
>gi|284163348|ref|YP_003401627.1| ribonuclease Z [Haloterrigena turkmenica DSM 5511]
gi|284013003|gb|ADB58954.1| ribonuclease Z [Haloterrigena turkmenica DSM 5511]
Length = 314
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 40/252 (15%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAIHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY 148
+ ++ L +R +N G + R D + V+AF T H +S GY
Sbjct: 92 HGTRRQLKGLVNALGNRPSFPVRINEVGDG-----DVAYRADEYEVRAFATDHDARSVGY 146
Query: 149 VVYSVKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VA 189
+ +K + E LG+P G + KL + E+ TV PE +
Sbjct: 147 ALVEDDRKGRFDRERAEELGVPVGPKFSKLHEGEPVELEDGTVVEPEQVVGDPRPGRAIV 206
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+TGDT EA D +L+ ++T+ DD ++AR H+ + E A +
Sbjct: 207 YTGDTRPAAATVEAADD---PELLIHDATFADDR--ADRARKTAHSTARQAAEIANRAGA 261
Query: 250 KAILLIHFSARH 261
+ L+H S+R+
Sbjct: 262 DQLALMHLSSRY 273
>gi|419953155|ref|ZP_14469300.1| ribonuclease Z [Pseudomonas stutzeri TS44]
gi|387969747|gb|EIK54027.1| ribonuclease Z [Pseudomonas stutzeri TS44]
Length = 321
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 42/247 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP +A+ G+ R P II P+ I + V+ RM H+ L +
Sbjct: 58 IFITHVHGDHCYGLPGLLASAGMMGRRHPLEIIAPAGIADWVQATL----RMSHAWLGYE 113
Query: 117 LVGLDV---GEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ--KLKQEYL---GLPGDE 168
L V GE + ++ V A H + GY + +L E L G+P
Sbjct: 114 LAFHAVESLGEWRSL--NMRVAATALSHRVPCYGYSFTEARPDPRLNIERLERDGVPRGP 171
Query: 169 IKKLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVM 215
+ + G ++ ++T V GD ++ EA A++LV
Sbjct: 172 LWGQLARGFDLEHEGRTLRSEDYLSFTRAPRRVVIGGDNDRPPLLAEA---CRGAQVLVH 228
Query: 216 ESTYVDDSTTVEQARD-YGHTHLSEIVEYAEKFENKAILLIHFSAR--------HKVDEI 266
E+TY T VE + + +GH+ +++ +A++ E ++L HFSAR H ++EI
Sbjct: 229 EATY--SQTLVEASGNTFGHSSAAQVAAFAQQAEVPNLVLTHFSARYQPGSQRGHSIEEI 286
Query: 267 RRAVDAV 273
R+ A
Sbjct: 287 RQEAAAA 293
>gi|383619856|ref|ZP_09946262.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|448696592|ref|ZP_21698004.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|445783220|gb|EMA34055.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
Length = 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 28 ELLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVFGIPGLLQTMAFNDREEPLAIHTP 87
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ ++ L + + VG + R D F V+ F+T H +S GY +
Sbjct: 88 QATRRQLKGLVNALGNRPDFPIRISEVG---DGDVAYRADDFEVRTFETDHDTRSVGYAL 144
Query: 151 YSVKQK-----LKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFT 191
+K + E LG+P GD ++ + E V P + +T
Sbjct: 145 VEDDRKGRFDRERAEELGVPVGPKFSRLHEGDPVELEDGTVVEPDQVVGDPRPGRSIVYT 204
Query: 192 GDTMSDF----IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
GDT + DE + +L+ ++T+ DD E+A + H+ E A +
Sbjct: 205 GDTRPTVRTIEVADEPD-------LLIHDATFADDR--AERAGETAHSTARGAAEIASRA 255
Query: 248 ENKAILLIHFSARH 261
K + L+H S+R+
Sbjct: 256 GAKRLALVHISSRY 269
>gi|357051762|ref|ZP_09112928.1| ribonuclease Z [Enterococcus saccharolyticus 30_1]
gi|355379197|gb|EHG26363.1| ribonuclease Z [Enterococcus saccharolyticus 30_1]
Length = 318
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P I+E V + ++ ++L++
Sbjct: 59 IFITHLHGDHIYGLPGLISSRSFQGGASPLEIYGPIGIEEFVRTVL----KISQTKLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVV--YSVKQKLKQE---YLGL-PGDE 168
LV ++ +E + KD V + H I+S GY V S + +L+ E LG+ PG
Sbjct: 115 LVFHEITKEGILFKDKQFTVSCRRLDHGIESFGYRVEEASHQGELQVEALTALGIKPGPV 174
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDT--MSDFIVDEANIDVLRARIL 213
+LK G +I + E V GDT ++ I+ N DV L
Sbjct: 175 FGRLKKGEIVTLEDGRQINGSDYVGEAKKGRTVTILGDTRLCANSILLAENADV-----L 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D + AR Y H+ + E A++ + K +LL H SAR+
Sbjct: 230 VHESTFNKDEA--KMARAYFHSTTVQAAEVAKQAQVKRLLLTHISARY 275
>gi|219852567|ref|YP_002466999.1| ribonuclease Z [Methanosphaerula palustris E1-9c]
gi|219546826|gb|ACL17276.1| ribonuclease Z [Methanosphaerula palustris E1-9c]
Length = 313
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH G+ V T R +P TI P + E E + R M +++
Sbjct: 60 IFITHWHADHFLGVFGLVQTLSFMGRAEPLTIYGPEWVHEFAEDV----RHMGKTQMRFV 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ--KLKQE---YLGL-PGDEI 169
L +V + D + V+AFKT H I S GYV+ + + +E LG+ PG
Sbjct: 116 LKSEEVLPGMVVPFDGYTVRAFKTRHGITSVGYVLEEDPRPGRFDREEAIRLGVKPGPLF 175
Query: 170 KKLKSSGTEITYTVTTPE-----------------VAFTGDTMSDF-IVDEANIDVLRAR 211
+L+ G E+ TV E V +TGDT V E +D A
Sbjct: 176 GRLQ-RGEEVLVTVDGQERIVRPEQVVGVERPGRKVIYTGDTRPVIPAVSEIGMD---AD 231
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ++TY D T + +A++ H E + A + + LIH S+R+
Sbjct: 232 LLVHDATYND--TDLARAKEVFHATAGEAADVARAIRARTLALIHISSRY 279
>gi|84489223|ref|YP_447455.1| ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
gi|84372542|gb|ABC56812.1| putative ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
Length = 281
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 58 LFISHAHMDHIGGLPMYV---ATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
++I+H H DHI GLP V A RG R +P I P I E ++ + R M +
Sbjct: 27 IYITHLHGDHILGLPGIVQSLAFRG--RTRPLHIYGPRGINELIDHI----RHMGFYTIG 80
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYLGL---PGD 167
+ L+ ++ ++ + + D + + K H + Y + ++Q L+Q+ + L PG
Sbjct: 81 YELITHEIEDDGILYQQNDFRILSRKMKHTVVDYAYKIEQLRQPKFLRQKAIELGIPPGP 140
Query: 168 EIKKLKSSGTEITY--TVTTPE-----------VAFTGDTM-SDFIVDEA-NIDVLRARI 212
KL+ +G E+T + PE V F+GDT+ + ++D A N+DV
Sbjct: 141 LFGKLQ-AGKEVTVDGKIIKPEQVLGPPREGVKVVFSGDTIPQESMIDFAENVDV----- 194
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
L+ E+T+ D E+A + GHT + A+K + ++L H S R+
Sbjct: 195 LIHEATFTKDIK--EKAFENGHTVAEDAAVIAKKANVEQLILTHLSNRY 241
>gi|421674626|ref|ZP_16114555.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
gi|421691694|ref|ZP_16131353.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|404562303|gb|EKA67527.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|410383926|gb|EKP36445.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
Length = 324
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 34/235 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P +++++ FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQEWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGIPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVME 216
LK G I + T + GD ++ +A D A++L+ E
Sbjct: 177 GHLK-RGYNIEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLLADACKD---AQLLIHE 232
Query: 217 STYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 233 STYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|14590979|ref|NP_143054.1| ribonuclease Z [Pyrococcus horikoshii OT3]
gi|41017522|sp|O58883.1|RNZ_PYRHO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|3257568|dbj|BAA30251.1| 307aa long hypothetical sulfatase [Pyrococcus horikoshii OT3]
Length = 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 30/245 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP + T L++ K P I P ++ L ++
Sbjct: 57 VFITHFHGDHYLGLPALIQTMSLWKRKDPLHIYGPEGSSTFLQNLLNSGYFAPSFDI--- 113
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK----LKQ-EYLGL-PGDEIK 170
LV G+ K+ V AF+ H + + GYV ++ LK+ + LGL PG +K
Sbjct: 114 LVHEISGKSRLKFKEYEVWAFEVSHGVPALGYVFKEKDKRGNFNLKKIKELGLEPGPWMK 173
Query: 171 KLKSSG-TEIT------YTVTTP-----EVAFTGDTMSDFIVDEANIDVLRARILVMEST 218
+L+ EI VT P +V ++GDT DE R +L+ E+T
Sbjct: 174 ELERQKIIEINGKIVRLLEVTGPKKRGAKVVYSGDTEP---CDEVIEFSRRGTLLIHEAT 230
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR-RAVDAVPAPL 277
YV++ E +D HT + E E +K + + ++L H S R+ E + +A+ P +
Sbjct: 231 YVNE----EDRKDSYHTTIEEACEIWKKSKARKLVLFHRSPRYSFKEYKEKALSICPQAI 286
Query: 278 AGRVF 282
R F
Sbjct: 287 IPRDF 291
>gi|418327933|ref|ZP_12939065.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614695|ref|ZP_13177657.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|418630602|ref|ZP_13193083.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|418633189|ref|ZP_13195606.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|420190119|ref|ZP_14696063.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|420204420|ref|ZP_14709978.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|420234665|ref|ZP_14739225.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
gi|365232492|gb|EHM73488.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819231|gb|EHR83359.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|374837792|gb|EHS01355.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|374840008|gb|EHS03515.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|394259010|gb|EJE03880.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|394273430|gb|EJE17861.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|394303908|gb|EJE47318.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
Length = 306
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
++ +++ ++ + F V+A H I S GY + +
Sbjct: 115 SITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVDALRDIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYKL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 NNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|352682794|ref|YP_004893318.1| ribonuclease Z [Thermoproteus tenax Kra 1]
gi|350275593|emb|CCC82240.1| ribonuclease Z [Thermoproteus tenax Kra 1]
Length = 280
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 43/234 (18%)
Query: 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
S +F+ ++H H DHI GLP ++T + K T++ P RR+ S L
Sbjct: 53 SLDFVAVTHEHEDHILGLPGLLSTAKMMG-KEITVLAP--------------RRLS-SYL 96
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLK-QEYLGLPGDEIKK 171
+ + G+ V E R+ L + + H ++ G+++ + V KL + G P + K
Sbjct: 97 SKS--GVRVASEIADRR-LKISCIEMCHTTETCGWLLEWDVGFKLDLSKVTGFPKQALTK 153
Query: 172 L-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEANIDVLRARILVMEST 218
L K E+ + PE + +TGDT A V +L+ E+T
Sbjct: 154 LIKGEPVEVNGRLILPEEVADPGHRRFRRLLYTGDTAP---CPRAWSSVGWVDVLIHEAT 210
Query: 219 YVDDSTTVEQARDY--GHTHLSEIVEYAEKFENKAILLIHFSARH-KVDEIRRA 269
+ DD VE AR + GH+ +++ VE A ++L H SAR+ +++ RRA
Sbjct: 211 FADD---VEPARAHEEGHSTVNDAVEAARALNASILILTHISARYDDLEKHRRA 261
>gi|147920763|ref|YP_685431.1| ribonuclease Z [Methanocella arvoryzae MRE50]
gi|110620827|emb|CAJ36105.1| RNase Z [Methanocella arvoryzae MRE50]
Length = 304
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 41/262 (15%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + + +F++H H DH G+P + T L R +P I P
Sbjct: 32 LLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVV 150
++E L R+ + L++ ++ + ++ K V+AF+T+H + S GY +
Sbjct: 92 DYVEEYCSLL----SRLGYLSLSYQVIPRRLSPGDVIKFKGYSVEAFRTFHSVPSLGYAL 147
Query: 151 YSVKQ-----KLKQEYLGLP-GDEIKKLKSSGTEITY--TVTTPEV----------AFTG 192
++ K + LG+P G KL + + T+T+ EV +TG
Sbjct: 148 KEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVYTG 207
Query: 193 DTM--SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT+ + F+ DV + EST+ DD +A + H+ + E A + K
Sbjct: 208 DTVASASFLPHLQGADV-----WISESTFGDD--MAGKAEETLHSTAGGVAELAARAGVK 260
Query: 251 AILLIHFSARHKVDEIRRAVDA 272
++L H S+R+ D DA
Sbjct: 261 QLVLTHVSSRYSTDTTPLLEDA 282
>gi|257869430|ref|ZP_05649083.1| ribonuclease Z [Enterococcus gallinarum EG2]
gi|257803594|gb|EEV32416.1| ribonuclease Z [Enterococcus gallinarum EG2]
Length = 318
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P I+E V + ++ ++L++
Sbjct: 59 IFITHLHGDHIYGLPGLISSRSFQGGASPLEIYGPIGIEEFVRTVL----KISQTKLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVV--YSVKQKLKQE---YLGL-PGDE 168
LV ++ +E + KD V + H I+S GY V S + +L+ E LG+ PG
Sbjct: 115 LVFHEITKEGILFKDKQFTVSCRRLDHGIESFGYRVEEASHQGELQVEALTALGIKPGPV 174
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDT--MSDFIVDEANIDVLRARIL 213
+LK G +I + E V GDT ++ I+ N DV L
Sbjct: 175 FGRLKKGEIVTLEDGRQINGSDYVGEAKKGRTVTILGDTRLCANSILLAENADV-----L 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D + AR Y H+ + E A++ + K +LL H SAR+
Sbjct: 230 VHESTFNKDEA--KMARAYFHSTTVQAAEVAKQAQVKRLLLTHISARY 275
>gi|56295604|emb|CAH04845.1| metal dependent hydrolase of beta-lactamase superfamily III (ElaC)
[uncultured archaeon]
Length = 312
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 41/262 (15%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + + +F++H H DH G+P + T L R +P I P
Sbjct: 40 LLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYGP 99
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVV 150
++E L R+ + L++ ++ + ++ K V+AF+T+H + S GY +
Sbjct: 100 DYVEEYCSLL----SRLGYLSLSYQVIPRRLSPGDVIKFKGYSVEAFRTFHSVPSLGYAL 155
Query: 151 YSVKQ-----KLKQEYLGLP-GDEIKKLKSSGTEITY--TVTTPEV----------AFTG 192
++ K + LG+P G KL + + T+T+ EV +TG
Sbjct: 156 KEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVYTG 215
Query: 193 DTM--SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT+ + F+ DV + EST+ DD +A + H+ + E A + K
Sbjct: 216 DTVASASFLPHLQGADV-----WISESTFGDD--MAGKAEETLHSTAGGVAELAARAGVK 268
Query: 251 AILLIHFSARHKVDEIRRAVDA 272
++L H S+R+ D DA
Sbjct: 269 QLVLTHVSSRYSTDTTPLLEDA 290
>gi|242242776|ref|ZP_04797221.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|416125248|ref|ZP_11595846.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|420174733|ref|ZP_14681181.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|420178202|ref|ZP_14684535.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|420180010|ref|ZP_14686270.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|420199438|ref|ZP_14705116.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
gi|242233912|gb|EES36224.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|319400845|gb|EFV89064.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|394244637|gb|EJD89972.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|394246828|gb|EJD92080.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|394251442|gb|EJD96527.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|394272220|gb|EJE16689.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
Length = 306
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
++ +++ ++ + F V+A H I S GY + +
Sbjct: 115 SITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVDALRDIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYKL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 NNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|194468447|ref|ZP_03074433.1| ribonuclease Z [Lactobacillus reuteri 100-23]
gi|194453300|gb|EDX42198.1| ribonuclease Z [Lactobacillus reuteri 100-23]
Length = 309
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ ++ + D V A K H I GY + +KL+++ +P
Sbjct: 115 LHFVEITDDGELFNDHGFRVIARKLDHKIACFGYRIEEADHPGELQVEKLREQK--VPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
I +G ++T + TP+ VA GDT A + A +L
Sbjct: 173 PIYGQLKAGKKVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQ---TKNAILLAQNADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D T + A +Y H+ + E A+K K +LL H SAR+
Sbjct: 230 VHESTFAKDETKM--AHNYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|312869010|ref|ZP_07729187.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
gi|311095436|gb|EFQ53703.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
Length = 309
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQV----SESRLSYP 114
Query: 117 LVGLDV---GEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDE 168
L +++ GE F R V A K H I GY V Q K L +P
Sbjct: 115 LHFVEIDHEGEAFHDR-GFTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGP 173
Query: 169 IKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILV 214
+ +G +T + P+ +A GDT E D A +LV
Sbjct: 174 VYGQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQD---ADVLV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + AR Y H+ + E A++ K +LL H SAR+
Sbjct: 231 HESTFAKDEAKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|116618569|ref|YP_818940.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122271231|sp|Q03W55.1|RNZ_LEUMM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116097416|gb|ABJ62567.1| RNAse Z [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 44/253 (17%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G + + L FI+H H DHI GLP ++++R G + +P TI P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+KE V+ R+ + L++ + +D+ E F V A H I++ G+ V
Sbjct: 96 KGVKEFVQTAL----RISETRLSYPIEYVDLTEGVIFEDHTFQVVAAPMRHRIETWGFRV 151
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVA------FTGDTMSD 197
+ KLKQ +P + +G TVT P+ F G
Sbjct: 152 IEKDHPGELLVDKLKQG--NIPSGPVYGQLKAGK----TVTLPDGRIVNGHDFIGKAQKG 205
Query: 198 ----FIVD---EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
FI+D N++ L A +LV ESTY + A+ + H+ + A +
Sbjct: 206 RIVTFILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAH 265
Query: 249 NKAILLIHFSARH 261
++L H SAR+
Sbjct: 266 VNKLVLTHLSARY 278
>gi|448683879|ref|ZP_21692499.1| ribonuclease Z [Haloarcula japonica DSM 6131]
gi|445783452|gb|EMA34281.1| ribonuclease Z [Haloarcula japonica DSM 6131]
Length = 309
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 43/277 (15%)
Query: 32 TCIIFPSLD---LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY 81
T IF + D L FD G R + + + LF++H H DH+ G+P + T
Sbjct: 19 TSSIFVNRDGDYLLFDCGEGTQRQMMRYGTGFAIDHLFVTHRHGDHVLGIPGLLQTWDFN 78
Query: 82 -RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R + I P+ + +++QL + + + V G+ R + ++A +T
Sbjct: 79 ERERAIAIHTPAGTRGNIKQLIQANGTTPSFPVRVNEV--SAGDVVLDRSEYEIRAIETA 136
Query: 141 HVIQSQGYVVYS-------VKQKLKQEYLGLPGDEIKKL-KSSGTEITYTVTTPEV---- 188
H S GYV+ ++K + E+ PG + KL + E PE
Sbjct: 137 HRCASVGYVLDEDDRKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGP 196
Query: 189 -------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
+TGDT+ V E + A +LV ++T+ +D E+A+ H+ E
Sbjct: 197 PRPGRRFVYTGDTLPAESVIEGSEG---ADLLVHDATFAEDRK--ERAKATAHSTAREAA 251
Query: 242 EYAEKFENKAILLIHFSARHK------VDEIRRAVDA 272
+ A + + L H S R+ VDE R A D
Sbjct: 252 DVARQAGASTLALTHISTRYATSADELVDEARDAFDG 288
>gi|260550918|ref|ZP_05825124.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|424054982|ref|ZP_17792505.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425741939|ref|ZP_18860069.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|445430788|ref|ZP_21438547.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
gi|260406045|gb|EEW99531.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|407438907|gb|EKF45449.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425489674|gb|EKU55977.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|444760416|gb|ELW84866.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
Length = 318
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 34/235 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV + ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNDAIQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQALTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVME 216
LK G I + T + GD ++ +A D A++L+ E
Sbjct: 177 GHLK-RGYNIEFEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELLADACKD---AQLLIHE 232
Query: 217 STYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 233 STYL--QTVLDKIGKGPMHSSAKMVAEFAEQQSLGNLILTHFSPRHQDKSGQQAI 285
>gi|15669696|ref|NP_248509.1| hypothetical protein MJ_1502 [Methanocaldococcus jannaschii DSM
2661]
gi|1592137|gb|AAB99515.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 324
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI G+P + + G + R K I P KE +E ++ + E
Sbjct: 64 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTH--YIEFP 121
Query: 115 HTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLP-GD 167
+ + E + K + + A+ T H I S Y+ +K+ K + LG+ G
Sbjct: 122 IKVYEIYTKEPITIYKEENYEIIAYPTEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKIGP 181
Query: 168 EIKKLKSSGT--EITYTVTTPE-----------VAFTGDT--MSDFIVDEANIDVLRARI 212
++KKLK+ I + PE +A++GDT + DF + L +
Sbjct: 182 DLKKLKNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKELGCDV 238
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
L+ E+T+ D + + A++ H+ + + V A+ KA++L H SAR+ +E
Sbjct: 239 LIHEATF--DDSAKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 289
>gi|420165501|ref|ZP_14672192.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
gi|394235302|gb|EJD80874.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
Length = 306
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
+ +++ ++ + F V+A H I S GY + +
Sbjct: 115 PITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVEALRGIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYEL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ VDE+
Sbjct: 223 KNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNVDEV 279
>gi|406599678|ref|YP_006745024.1| ribonuclease Z [Leuconostoc gelidum JB7]
gi|406371213|gb|AFS40138.1| ribonuclease Z [Leuconostoc gelidum JB7]
Length = 314
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGANKNEPLTIYGPKGVKEFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ +V ++ E F V A K H I++ GY V + KL+ E G+P
Sbjct: 115 YPVVYTEIVEGVIFEDKTFRVIAAKMRHRIETWGYRVEEKDHPGELLVDKLRHE--GVPS 172
Query: 167 DEIKKLKSSGTEITYTVTTPEVA------FTGDTMSD----FIVD---EANIDVL--RAR 211
I +G + V P+ + G+ FI+D NI +L A
Sbjct: 173 GPIFGQLKAGKK----VILPDGRRLDGHDYIGEAQKGRVVTFILDTRPNDNIGILAHNAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ESTY + A+ + H+ A + ++L H SAR+
Sbjct: 229 VLVHESTYGAGDEEAKLAKSHAHSTSVNAAMAAHNAQVDKLVLTHLSARY 278
>gi|300173019|ref|YP_003772185.1| ribonuclease Z [Leuconostoc gasicomitatum LMG 18811]
gi|333445946|ref|ZP_08480888.1| ribonuclease Z [Leuconostoc inhae KCTC 3774]
gi|299887398|emb|CBL91366.1| ribonuclease Z [Leuconostoc gasicomitatum LMG 18811]
Length = 314
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGANKNEPLTIYGPKGVKEFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ +V ++ E F V A K H I++ GY V + KL+ E G+P
Sbjct: 115 YPVVYTEIVEGVIFEDKTFRVIAAKMRHRIETWGYRVEEKDHPGELLVDKLRHE--GVPS 172
Query: 167 DEIKKLKSSGTEITYTVTTPEVA------FTGDTMSD----FIVD---EANIDVL--RAR 211
I +G + V P+ + G+ FI+D NI +L A
Sbjct: 173 GPIFGQLKAGKK----VILPDGRRLDGHDYIGEAQKGRVVTFILDTRPNDNIGILAHNAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ESTY + A+ + H+ A + ++L H SAR+
Sbjct: 229 VLVHESTYGAGDEEAKLAKSHAHSTSVNAAMAAHNAQVDKLVLTHLSARY 278
>gi|41019477|sp|Q58897.2|RNZ_METJA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 317
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI G+P + + G + R K I P KE +E ++ + E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTH--YIEFP 114
Query: 115 HTLVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLP-GD 167
+ + E + K + + A+ T H I S Y+ +K+ K + LG+ G
Sbjct: 115 IKVYEIYTKEPITIYKEENYEIIAYPTEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKIGP 174
Query: 168 EIKKLKSSGT--EITYTVTTPE-----------VAFTGDT--MSDFIVDEANIDVLRARI 212
++KKLK+ I + PE +A++GDT + DF + L +
Sbjct: 175 DLKKLKNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKELGCDV 231
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
L+ E+T+ D + + A++ H+ + + V A+ KA++L H SAR+ +E
Sbjct: 232 LIHEATF--DDSAKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 282
>gi|20091849|ref|NP_617924.1| ribonuclease Z [Methanosarcina acetivorans C2A]
gi|41017565|sp|Q8TLK5.1|RNZ_METAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|19917040|gb|AAM06404.1| metallo-beta-lactamase [Methanosarcina acetivorans C2A]
Length = 305
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHR 106
R + +S + +F+SH H DH G+P + T K P +I + +LF +
Sbjct: 46 RAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFMGRKDPLMIYGPAGTREFTELF---K 102
Query: 107 RMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQE 160
+ + L + + G+++ + + + V+A +T H S GY + + + K
Sbjct: 103 ALGYFNLKYEIHGMELKPGDVVEGEGYVVRALETEHSTPSLGYALIENPRPGRFNREKAV 162
Query: 161 YLGL-PGDEIKKL-KSSGTEITYTVTTPE-----------VAFTGDTMSDFIVDEANIDV 207
LG+ PG KL K + E V PE + ++GDT V EA+ D
Sbjct: 163 ALGVPPGPLFSKLQKGNPVEAGGKVVRPEEVMGTPRPGRTIVYSGDTRPCEAVLEASRD- 221
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
A +L+ + ++ D+ E A + H+ E+ A++ + ++L H S+R+ D
Sbjct: 222 --ADLLIHDGSFADE--MAEWAEESMHSTAGEVAALAKEAGVRKLVLTHISSRYTDD 274
>gi|62859611|ref|NP_001017028.1| elaC homolog 1 [Xenopus (Silurana) tropicalis]
gi|89269091|emb|CAJ81938.1| elac1 (prov) [Xenopus (Silurana) tropicalis]
Length = 363
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 67/278 (24%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPT-----IIVPSCIKEDVEQL 101
R P +A +FI+H H DH+ GLP ++ T L P+ I P ++E V++
Sbjct: 47 RSPLKAGRITKIFITHLHGDHMFGLPGFLCTVSLQCGCTPSKQLVDIYGPVGLREFVQRS 106
Query: 102 FEV-HRRMDHSELNHTLVGL-------------DVGEEFCMRKD---------------- 131
E+ H ++ + H LV G E C+ +
Sbjct: 107 LEISHSQLVFPYVVHELVPSPDQCPAEEFKDFSSRGGESCLATEEQGRTIYASPEDGSYE 166
Query: 132 ------LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PGDEIKKLK---- 173
VKAFK +H I S G+V+ + QKLK+ LG+ PG KLK
Sbjct: 167 LIADEQFTVKAFKLFHRIPSFGFVIEERERPGKLNMQKLKE--LGIQPGPVCGKLKLGAT 224
Query: 174 ---SSGTEITYT------VTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDST 224
+G +++ + + +V GD V A + A +L+ E+T D +
Sbjct: 225 ITLDNGQKVSPSDVLGDPIPGRKVCILGDCSGVIAVGGAKL-CCDADVLIHEATL--DDS 281
Query: 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+++A+++GH+ ++A + ++L HFS R+K
Sbjct: 282 QMDKAKEHGHSTPKMAADFANLCCARKLVLTHFSQRYK 319
>gi|150402080|ref|YP_001329374.1| ribonuclease Z [Methanococcus maripaludis C7]
gi|166991485|sp|A6VFJ7.1|RNZ_METM7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150033110|gb|ABR65223.1| ribonuclease Z [Methanococcus maripaludis C7]
Length = 310
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 45/257 (17%)
Query: 43 FDIGRCPSR--------ALSQNFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G R + N +FISH H DHI G+P +A +G R KP I P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLMQSIAFQG--RTKPLNIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ +E + V +N + E+ + V +F H + + YV
Sbjct: 91 KETAKMIENILNVGYHSIDYPINVYEISAKSPEKIISSDNYEVFSFPVVHSVPALAYVFK 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKSS-GTEITYTVTTPE-----------VAFTGDT 194
VK+ K LG+ G ++K+LK E+ + TP+ V ++GDT
Sbjct: 151 QVKKPRMDLEKVNKLGIEIGPDLKRLKDGFNIELNGKIITPDDVTVPPKKGICVGYSGDT 210
Query: 195 M-----SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+ ++F+ + L+ L+ E+T+ D + + A++ H+ +S+ + A+
Sbjct: 211 IPLNEFAEFLKE------LKCTTLIHEATF--DKSMDKNAKETLHSTVSDALNIAKLSGV 262
Query: 250 KAILLIHFSARHKVDEI 266
++L H SAR+ DEI
Sbjct: 263 NTVILTHISARY--DEI 277
>gi|448401320|ref|ZP_21571556.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
gi|445666583|gb|ELZ19242.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
Length = 314
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 42/252 (16%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLETMAFNDRTEPLAIHTPH 92
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
+ ++ L +R +N G + R D + V+AF T H +S GY
Sbjct: 93 GTRRQLKSLVNALGNRPSFPVRINEVGDG-----DVAYRADEYEVRAFATDHDTRSVGYA 147
Query: 150 VYSVKQKLK-----QEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAF 190
+ +K + E LG+P G + KL K E+ TV PE + +
Sbjct: 148 LVEDDRKGRFDREHAEELGVPVGPKFSKLHKGESVELEDGTVVEPEQVVGEPRPGRSIVY 207
Query: 191 TGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT A I+V +L+ ++T+ DD ++A D H + E A +
Sbjct: 208 TGDTRP----TAATIEVADEPDLLIHDATFADD--MADRATDTAHATARQAAEIANRTGA 261
Query: 250 KAILLIHFSARH 261
+ L+H S+R+
Sbjct: 262 DRLALMHISSRY 273
>gi|417885528|ref|ZP_12529682.1| ribonuclease Z [Lactobacillus oris F0423]
gi|341595450|gb|EGS38099.1| ribonuclease Z [Lactobacillus oris F0423]
Length = 309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQV----SESRLSYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDEI 169
L V +D E + V A K H I GY V Q K L +P +
Sbjct: 115 LHFVEIDHEGEVFHDRGFTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPV 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+G +T + P+ +A GDT E D A +LV
Sbjct: 175 YGQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQD---ADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + AR Y H+ + E A++ K +LL H SAR+
Sbjct: 232 ESTFAKDEPKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|27468105|ref|NP_764742.1| hypothetical protein SE1187 [Staphylococcus epidermidis ATCC 12228]
gi|251810920|ref|ZP_04825393.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|282876071|ref|ZP_06284938.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|417656057|ref|ZP_12305748.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|417913663|ref|ZP_12557326.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|418606691|ref|ZP_13169961.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|418609699|ref|ZP_13172835.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|418664573|ref|ZP_13226041.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|421607003|ref|ZP_16048253.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
gi|41017554|sp|Q8CSG7.1|RNZ_STAES RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|27315651|gb|AAO04786.1|AE016748_20 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805600|gb|EES58257.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|281295096|gb|EFA87623.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|329737307|gb|EGG73561.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|341654685|gb|EGS78423.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|374406638|gb|EHQ77530.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|374407467|gb|EHQ78329.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|374410383|gb|EHQ81141.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|406657296|gb|EKC83685.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
Length = 306
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 30/230 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GL-PGDE 168
+ +++ ++ + F V+A H I S GY + + + + E L GL PG +
Sbjct: 115 PITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPIMPGTINVEALRGIGLEPGPK 174
Query: 169 IKKLKSSGT----EITYTV--------TTPEVAFTGDTMSDFIVDEANIDVLRARILVME 216
+++K T + Y P ++ GDT +E + + +++ E
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPGPIISIFGDTKP--CENEYEL-AKNSDLMIHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 232 ATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|293609558|ref|ZP_06691860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423300|ref|ZP_18913459.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
gi|292828010|gb|EFF86373.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699945|gb|EKU69543.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
Length = 325
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A + H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEATQPQQITDEFIVQAHQLSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVME 216
LK G I + T + GD ++ A D A++L+ E
Sbjct: 177 GHLK-QGYNIEFDGQTLKAQDFIKIQNQQVHAIIGGDNDQPELLANACKD---AQLLIHE 232
Query: 217 STYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY+ T +++ + H+ + E+AE ++L HFS RH+ ++A+
Sbjct: 233 STYL--QTVLDKVGKGPMHSSAKMVAEFAEHQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|57866978|ref|YP_188643.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|293366536|ref|ZP_06613213.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|417659675|ref|ZP_12309275.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|417908627|ref|ZP_12552384.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|417912271|ref|ZP_12555966.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|418605787|ref|ZP_13169094.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|418613296|ref|ZP_13176310.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|418616208|ref|ZP_13179133.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|418621838|ref|ZP_13184603.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|418625083|ref|ZP_13187741.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|418627723|ref|ZP_13190293.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|418629145|ref|ZP_13191659.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|419769414|ref|ZP_14295508.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|419771738|ref|ZP_14297784.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|420170215|ref|ZP_14676776.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|420172556|ref|ZP_14679055.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|420183166|ref|ZP_14689299.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|420187293|ref|ZP_14693314.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|420194801|ref|ZP_14700598.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|420197384|ref|ZP_14703108.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|420201633|ref|ZP_14707243.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|420206178|ref|ZP_14711688.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|420209009|ref|ZP_14714447.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|420211167|ref|ZP_14716541.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|420213963|ref|ZP_14719243.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|420215960|ref|ZP_14721185.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|420219162|ref|ZP_14724196.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|420221710|ref|ZP_14726637.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|420225700|ref|ZP_14730527.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|420227288|ref|ZP_14732060.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|420229607|ref|ZP_14734313.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|420232021|ref|ZP_14736663.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
gi|76363382|sp|Q5HP47.1|RNZ_STAEQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57637636|gb|AAW54424.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|291319305|gb|EFE59674.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|329735312|gb|EGG71604.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|341651282|gb|EGS75087.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|341655988|gb|EGS79711.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|374401490|gb|EHQ72563.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|374816231|gb|EHR80438.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|374821034|gb|EHR85101.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|374825971|gb|EHR89887.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|374828266|gb|EHR92105.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|374828870|gb|EHR92693.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|374834576|gb|EHR98215.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|383358033|gb|EID35494.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|383360557|gb|EID37952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|394240553|gb|EJD85976.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|394241717|gb|EJD87126.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|394249629|gb|EJD94842.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|394256272|gb|EJE01205.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|394263861|gb|EJE08582.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|394266191|gb|EJE10837.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|394271901|gb|EJE16380.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|394278017|gb|EJE22334.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|394279237|gb|EJE23545.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|394281620|gb|EJE25846.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|394283885|gb|EJE28046.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|394290336|gb|EJE34200.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|394290860|gb|EJE34705.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|394292956|gb|EJE36689.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|394293134|gb|EJE36857.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|394297378|gb|EJE40979.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|394299373|gb|EJE42924.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|394301743|gb|EJE45197.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
Length = 306
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
+ +++ ++ + F V+A H I S GY + +
Sbjct: 115 PITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVEALRGIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYEL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 KNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|336114307|ref|YP_004569074.1| ribonuclease Z [Bacillus coagulans 2-6]
gi|335367737|gb|AEH53688.1| ribonuclease Z [Bacillus coagulans 2-6]
Length = 305
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R P T+ P K V EV ++ + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGNGPLTVYGPKGTKAFV----EVSLKVSETHLKYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L +++ E D F V A + H I+S GY + + +LK+E + PG
Sbjct: 115 LEIIEIEEGTVFEDDRFMVCALRLDHGIESFGYRIAEKDKPGALDADQLKKEGI-RPGPV 173
Query: 169 IKKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDV-LRARILV 214
+ LK T E ++ + +A GDT +EA I + A +L+
Sbjct: 174 YRLLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDTRP----NEAAIRLAANADLLI 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T+ +S + A DY H+ ++ + A++ K +LL H SAR+
Sbjct: 230 HEATFNKESG--QMAHDYFHSTTADAAQTAKQAGAKRLLLTHISARY 274
>gi|311068985|ref|YP_003973908.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|419820371|ref|ZP_14343982.1| ribonuclease Z [Bacillus atrophaeus C89]
gi|310869502|gb|ADP32977.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|388475523|gb|EIM12235.1| ribonuclease Z [Bacillus atrophaeus C89]
Length = 308
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P I+ +E V + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIRAFIETSLNV----TATRLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L +++ E D F V A H + + GY V ++K L +E PG
Sbjct: 115 LAIIEIEEGVIFEDDQFTVTAKPVIHGVPAFGYRVQEKDMPGALKADLLKEMKIPPGPIY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G E+T + P+ VAF+GDT V E +D A +LV
Sbjct: 175 QKIK-QGEEVTLEDGRVINGRDFLDEPKKGRVVAFSGDTRVCSNVKELAVD---ADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + A DY H+ + + A++ K ++L H SAR++
Sbjct: 231 EATFAKGDDKL--AHDYFHSTTEQAAKTAKEAGAKKLILTHISARYQ 275
>gi|335428981|ref|ZP_08555891.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|335430567|ref|ZP_08557457.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334887970|gb|EGM26285.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334891922|gb|EGM30168.1| ribonuclease Z [Haloplasma contractile SSD-17B]
Length = 305
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + ISH H DHI GLP +AT R R +P TII P IK +E + + L+
Sbjct: 55 DVILISHLHGDHIYGLPGLLATIRNSERTEPITIIGPKGIKRMMESILVL-----APYLS 109
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI-KKLK 173
+ ++ L+ EF +++ +K K H GY +++++ K + + +++ KK+
Sbjct: 110 YEIIILENPSEFTYLENMKIKTEKLNHTAPCLGY-SFNIERNRKFDVVKAKENKVPKKIW 168
Query: 174 S---SGTEITY--TVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
S + E Y V TPE +++ DT + E V + +L+ E
Sbjct: 169 SVLQNEEEALYDGVVYTPEQVLGKERKGLKLSYIADTRPTKTLPEF---VKGSDLLITEG 225
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
TY DD VE+A H E E A E +LL HFS
Sbjct: 226 TYGDDE-DVEKAIRNKHLTFKEAAEIAVHGEVSELLLTHFS 265
>gi|418411915|ref|ZP_12985181.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
gi|420163124|ref|ZP_14669871.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|420167900|ref|ZP_14674552.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|420184477|ref|ZP_14690586.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|394234813|gb|EJD80387.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|394237928|gb|EJD83414.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|394257128|gb|EJE02050.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|410891498|gb|EKS39295.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
Length = 306
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R KP TII P I+ +E + + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQ----LSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS---------------------- 152
+ +++ ++ + F V+A H I S GY + +
Sbjct: 115 PITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVEALRDIGLEPGPK 174
Query: 153 ---VKQKLKQEYLGL--PGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV 207
VK + EY GL D+ K G P ++ GDT +E +
Sbjct: 175 YQEVKLQETFEYKGLIYNSDDFKGKAKPG---------PIISIFGDTKP--CENEYEL-A 222
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ +++ E+TY++ + A +Y H+H+ ++ ++ L+ H S R+ +DE+
Sbjct: 223 KNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEV 279
>gi|423332828|ref|ZP_17310610.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
gi|337727946|emb|CCC03035.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
Length = 309
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ ++ + D V A K H I GY + +KL+++ +P
Sbjct: 115 LHFVEITDDGELFNDHGFRVIARKLDHKIACFGYRIEEADHPGELQVEKLREQK--VPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
I +G +T + TP+ VA GDT A + A +L
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQ---TKNAILLAQNADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D T + A +Y H+ + E A+K K +LL H SAR+
Sbjct: 230 VHESTFAKDETKM--AHNYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|333398130|ref|ZP_08479943.1| ribonuclease Z [Leuconostoc gelidum KCTC 3527]
Length = 314
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + + TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGANKNESLTIYGPKGVKEFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ +V +++ E F V A K H I++ GY + + KL+ E G+P
Sbjct: 115 YPVVYIEIVEGVIFEDKTFRVIAAKMRHRIETWGYRIEEKDHPGELLVDKLRHE--GVPS 172
Query: 167 DEIKKLKSSGTEITYTVTTP-------EVAFTGDTMSDFIVD---EANIDVL--RARILV 214
I +G ++T + A G ++ FI+D NI +L A +LV
Sbjct: 173 GPIFGQLKAGKKVTLSDGRRLDGHDYIGAAQKGRVVT-FILDTRPNDNIGILAHHADVLV 231
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
ESTY + A+ + H+ A + ++L H SAR+
Sbjct: 232 HESTYGAGDEEAKLAKSHAHSTSVNAAMAAHNAQVDKLVLTHLSARY 278
>gi|337284253|ref|YP_004623727.1| ribonuclease Z [Pyrococcus yayanosii CH1]
gi|334900187|gb|AEH24455.1| ribonuclease Z [Pyrococcus yayanosii CH1]
Length = 299
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GL + T L+ R KP I P E V+ L R + +
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWNRTKPLHIYGPEGSAEFVKNLL----RSGYFKPAFD 112
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGL-PGDEIK 170
+V ++GE + + +F+ H I + GYV ++ K LGL PG +K
Sbjct: 113 VVIHEIGEVRLRFGEYEIWSFEVEHGIPALGYVFKERDRRGHFDLEKIRKLGLKPGPWMK 172
Query: 171 KLKSSG-TEITYT------VTTP-----EVAFTGDTMSDFIVDEANIDVLRARILVMEST 218
L+ G E++ VT P ++ ++GDT + + RA +L+ E+T
Sbjct: 173 VLEERGEVEVSGMRIRLEDVTGPKRRGIKIVYSGDTEP---CERLKLFARRADLLIHEAT 229
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
Y+ + E RD HT + E A++ + + + L H + R+ DE
Sbjct: 230 YIRE----EHRRDSYHTTVEEACAIAQEAKARLLALFHRAPRYPYDE 272
>gi|294494977|ref|YP_003541470.1| RNAse Z [Methanohalophilus mahii DSM 5219]
gi|292665976|gb|ADE35825.1| RNAse Z [Methanohalophilus mahii DSM 5219]
Length = 312
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 41 LAFDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + +S + +FISH H DH+ G+P + T + R P TI P
Sbjct: 40 LLFDCGEGTQQQMMRARTGMMSLSSIFISHFHADHVLGIPGLLQTLSFHGRDTPLTIYGP 99
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
VEQ ++ + + LN + V L+ G + R+ V A + H + S Y
Sbjct: 100 VW----VEQFVKLVSLLGYCRLNFEVKAVPLEAG-DVVQREGYVVNAIASEHSVPSLAYA 154
Query: 150 VYSVKQ-----KLKQEYLGLP-GDEIKKL-KSSGTEITYTVTTP-----------EVAFT 191
+ ++ + + E +G+P G +L K E+ + P ++ +T
Sbjct: 155 LVENERPGKFDRRRAEEMGVPVGPLYSRLQKGESVEVNGRIIHPNEVIGPSRRGRKLIYT 214
Query: 192 GDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
GDT + EA+ + A +L+ + T + + AR+ H+ +E + A+K K
Sbjct: 215 GDTRPCEAILEASKN---ADVLIHDGTLAQEKA--DWARESLHSTANEAADVAKKAGVKR 269
Query: 252 ILLIHFSARHKVD 264
++L H S+R+ D
Sbjct: 270 LILTHISSRYTDD 282
>gi|372325262|ref|ZP_09519851.1| Ribonuclease Z [Oenococcus kitaharae DSM 17330]
gi|366984070|gb|EHN59469.1| Ribonuclease Z [Oenococcus kitaharae DSM 17330]
Length = 326
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 108/269 (40%), Gaps = 57/269 (21%)
Query: 43 FDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY--------RMKPP 86
FD+G + +RA +FISH H DHI GLP ++ +R R
Sbjct: 36 FDVGEATQHQLLKSNTRARKITKIFISHMHGDHIFGLPGFLTSRNFQGSEAIDQGRPSDL 95
Query: 87 TIIVPSCIKEDVEQLFEVHR-----RMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYH 141
TI P+ +++ V + + R+D E++ +V D K V AF H
Sbjct: 96 TIYGPAGLRQYVFSALKAAQVRLQYRVDFVEVHPGVVFQD--------KQFSVTAFAMNH 147
Query: 142 VIQSQGYVVYSVK-----QKLKQEYLGLPGDEIKKLKSSGTEITYT---------VTTPE 187
I+ Y + Q K LGL + +G +I+ P+
Sbjct: 148 GIEDYAYRIVEADAVGELQVAKLLNLGLKSGPLFGQIKAGQDISLPDGRVLKSADFIGPD 207
Query: 188 -----VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE 242
V DT S+ + EA A +LV ESTY D A+ +GH+ + E
Sbjct: 208 RPGRIVTIVMDTKSNPAIIEA---AKNADLLVHESTY--DGQNTAMAKKHGHSTCVQAAE 262
Query: 243 YAEKFENKAILLIHFSARHKVDEIRRAVD 271
A+K + K ++L H SAR+ + RA D
Sbjct: 263 NAKKAQAKHLILTHISARY----LGRAAD 287
>gi|397608822|gb|EJK60102.1| hypothetical protein THAOC_19611 [Thalassiosira oceanica]
Length = 256
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 88 IIVPSCIKEDVEQLFEVHRRMDHSELNHT------------LVGLDVGEEFCMRKDLF-- 133
++VP IK V+ ++++ + + T L+G++ G+ + KD +
Sbjct: 1 MLVPRPIKNLVKNFLLAEAQLNYGDPSQTDDQTVEALGEFNLMGVEDGDRLILPKDRYTG 60
Query: 134 ------VKAFKTYHV--IQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE------- 178
+K F+ H + + Y V+ KQ+LK Y G+ EI K+ S E
Sbjct: 61 SPTPIGIKVFEAPHKSGVPAVSYGVFRQKQRLKDTYRGMDKSEIGKILRSKRETGDKDVA 120
Query: 179 ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTT--VEQARDYGHTH 236
IT + +TGDT + ++ V R ++ E T++ +T Q + GH H
Sbjct: 121 ITEQYDEGILFYTGDTTITLLREKWKSIVPHFRWIIHEVTFLGTPSTDLDTQVMNKGHCH 180
Query: 237 LSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
+++ + F +L+H+S R+ +E+ + V
Sbjct: 181 YAQLHPWICAFPKTNFILVHWSLRYGREEVLEWFNKV 217
>gi|223477179|ref|YP_002581723.1| Ribonuclease Z [Thermococcus sp. AM4]
gi|214032405|gb|EEB73235.1| Ribonuclease Z [Thermococcus sp. AM4]
Length = 314
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 62/264 (23%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ FD+G R ++ L FI+H H DH GL + T L+ R KP I P
Sbjct: 32 ILFDVGEGTIRQMNTAKLSPMKVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGP 91
Query: 92 SCIKEDVEQ---------LFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
E V+ +F++H ++GE K + +FK H
Sbjct: 92 KYTFEFVQNFINSGFFRPVFDIHVH-------------ELGETRLKFKGYEIWSFKVEHG 138
Query: 143 IQSQGYVVYS-------VKQKLKQEYLGL-PGDEIKKLKSSGTEITYT--------VTTP 186
I + GYV + +KLKQ GL PG + KL+ G +I + VT P
Sbjct: 139 IPALGYVFREKDKRGKFLPEKLKQ--YGLEPGPMLGKLEREG-QIEWNGQIIRLEDVTGP 195
Query: 187 -----EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIV 241
++ +TGDT V+ + RA +L+ ++TY+ D E H+ + E
Sbjct: 196 RRRGVKIVYTGDTEP---VERVKLFSERADLLIHDATYLTDEDRGESY----HSTVEEAC 248
Query: 242 EYAEKFENKAILLIHFSARHKVDE 265
E A+K + K + L H + R+ DE
Sbjct: 249 ETAKKAKVKLLALFHRAFRYTYDE 272
>gi|424059327|ref|ZP_17796818.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|445492437|ref|ZP_21460384.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
gi|404670065|gb|EKB37957.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|444763676|gb|ELW88012.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
Length = 324
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 46/241 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFI----------------VDEANIDVLR-A 210
LK + F G T+ DFI E +D + A
Sbjct: 177 GHLKRGYN----------IEFEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELLVDACKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
++L+ ESTY+ T +++ + H+ + E+ E+ ++L HFS RH+ ++A
Sbjct: 227 QLLIHESTYL--QTVLDKVGKGPMHSSAKMVAEFVEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 270 V 270
+
Sbjct: 285 I 285
>gi|418294368|ref|ZP_12906263.1| ribonuclease Z [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065746|gb|EHY78489.1| ribonuclease Z [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 327
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 36/242 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRR-MDHSELNHTL 117
I+H H DH GLP +A+ G+ R TII P I+ V E+ + + + + H +
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMMGRKAALTIIAPQGIETWVRATLEMSQNWLGYDLVFHAV 119
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK------ 171
LD MR + A H + GY + + + L D + +
Sbjct: 120 ESLDEWRTPNMR----IAATALSHRVPCYGYSFTEARPDPRLDIDRLERDGVPRGPLWGQ 175
Query: 172 ------------LKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTY 219
L S ++++ T + GD ++ +A A++LV E+TY
Sbjct: 176 LARGFDVEHEGRLLRSDDYLSFSRTPQRIVIGGDNDRPELLADA---CRGAQLLVHEATY 232
Query: 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR--------HKVDEIRRAVD 271
+ + + D+GH+ + + +A+ ++L HFSAR H +D++R +
Sbjct: 233 TE-AVANDARNDFGHSTAASVARFAQTVGLPNLVLTHFSARYQKNAGRGHSIDDLRAEAN 291
Query: 272 AV 273
A+
Sbjct: 292 AL 293
>gi|240103139|ref|YP_002959448.1| ribonuclease Z [Thermococcus gammatolerans EJ3]
gi|259494146|sp|C5A5S2.1|RNZ_THEGJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239910693|gb|ACS33584.1| Ribonuclease Z [Thermococcus gammatolerans EJ3]
Length = 314
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 58/262 (22%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ FD+G R ++ L FI+H H DH GL + T L+ R KP I P
Sbjct: 32 ILFDVGEGTIRQMNSAKLSPMRVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGP 91
Query: 92 SCIKEDVEQL---------FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
E V+ FEVH ++GE KD + +FK H
Sbjct: 92 KYTFEFVQNFLNSGFFRPGFEVHVH-------------ELGETRLKFKDYEIWSFKVEHG 138
Query: 143 IQSQGYVVYSVKQKLK------QEYLGLPGDEIKKLKSSGTEITYT--------VTTP-- 186
I + GYV ++ K +Y PG + KL+ G +I + VT P
Sbjct: 139 IPALGYVFKEKDKRGKFLPEKLAQYGLRPGPILGKLEKDG-KIEWNGQVIRLEDVTGPRR 197
Query: 187 ---EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+V +TGDT + + RA +L+ ++TY+ D ++ Y H+ + E E
Sbjct: 198 RGVKVVYTGDTEP---CERVRLFAERADLLIHDATYLSDG---DRGDSY-HSTVEEACET 250
Query: 244 AEKFENKAILLIHFSARHKVDE 265
A + + K + L H + R+ DE
Sbjct: 251 ARRAKVKLLALFHRAFRYTYDE 272
>gi|269962941|ref|ZP_06177279.1| hypothetical protein VME_36630 [Vibrio harveyi 1DA3]
gi|269832303|gb|EEZ86424.1| hypothetical protein VME_36630 [Vibrio harveyi 1DA3]
Length = 329
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 36/235 (15%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRM 108
LS N+L I+H H DH GLP +A+ G+ K P TII P E ++Q FE +
Sbjct: 54 LSLNYLRAICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP----EGIKQWFEATQAF 109
Query: 109 DHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV-------VYSVKQKLKQE 160
L L ++V + + F + A H + S Y +Y KL+Q
Sbjct: 110 TKLYLPFELHFIEVEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQ- 168
Query: 161 YLGLPGDEIKKLKSSGTEITYTVTT-------------PEVAFTGDTMSDFIVDEANIDV 207
L +P I G ++ Y T +V GD +D +
Sbjct: 169 -LNIPRGPIWGELVRGNDVEYQGQTLMSKAFTKLAHPPRKVIICGDNDKPETLDSL---I 224
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV ESTY + E+A + GH + S++ YA+ + +++L HFS R++
Sbjct: 225 EGAHLLVHESTYSE--AMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQ 277
>gi|408356557|ref|YP_006845088.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
gi|407727328|dbj|BAM47326.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
Length = 311
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R + P TI P I++ +E + + +LN
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQEGISPLTIYGPKGIRDYIEMSLSISQTKLGYQLN-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGL-PGDE 168
V + G +F + D + K H + S GY + Q KLK LG+ PG
Sbjct: 117 FVEVYHGFQF-VENDYTIDVIKLDHGVDSFGYRIIEADQIGELQVDKLKS--LGIKPGPI 173
Query: 169 IKKLKSS------GTEITY-------TVTTPEVAFTGDTMSDFIVDEANID-VLRARILV 214
+++KS+ E+ Y ++A GDT N+D + +L+
Sbjct: 174 YQQIKSNEVTQLPNGELIYRQDVVGSNKKGRKIAIFGDTRYPL----KNVDFIYNCDLLI 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAVD 271
E+T+ + + A Y H+ ++ E A++ + K ++L H SAR H +++ R
Sbjct: 230 HEATFHGEDQNL--ADQYYHSSNVQVAELAKQAQVKQLILTHISARYQEHDLEDFLREAR 287
Query: 272 AV 273
AV
Sbjct: 288 AV 289
>gi|148543891|ref|YP_001271261.1| ribonuclease Z [Lactobacillus reuteri DSM 20016]
gi|184153291|ref|YP_001841632.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227364799|ref|ZP_03848847.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|325682576|ref|ZP_08162093.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
gi|166991481|sp|A5VJA0.1|RNZ_LACRD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808644|sp|B2G6S0.1|RNZ_LACRJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|148530925|gb|ABQ82924.1| RNAse Z [Lactobacillus reuteri DSM 20016]
gi|183224635|dbj|BAG25152.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227070143|gb|EEI08518.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|324978415|gb|EGC15365.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
Length = 309
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ ++ + D V A K H I GY + +KL+++ +P
Sbjct: 115 LHFVEITDDGELFNDHGFRVIARKLDHKIACFGYRIEEADHPGELQVEKLREQK--VPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
I +G +T + TP+ +A GDT A + A +L
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQ---TKNAILLAQNADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D T + A +Y H+ + E A+K K +LL H SAR+
Sbjct: 230 VHESTFAKDETKM--AHNYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|52549192|gb|AAU83041.1| metallo-beta-lactamase [uncultured archaeon GZfos26D6]
Length = 335
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 29/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ G+P + T L R +P I P + + + L + ++ N
Sbjct: 84 IFISHFHADHVLGIPGLLQTMALQDRQEPLEIYGPKQVDKFLYHLLA----LGYAGRNFE 139
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGL-PGDEI 169
+ +++ +R+ + ++ KT H I S GYV+ + + K LG+ PG
Sbjct: 140 VKAIELRPGDVVRRAGYEIRVIKTVHNIPSIGYVLEEDMRPGRFNREKAIELGIKPGPFF 199
Query: 170 KKLKSS------GTEIT--YTVTTP----EVAFTGDTMSDFIVDEANIDVLRARILVMES 217
KL+S G EI V P ++ +TGDT V EA+ + A +L+ +S
Sbjct: 200 SKLQSGRSILLDGKEIRPEQVVGPPRPGRKIVYTGDTRPCDSVIEASEN---ADLLIHDS 256
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T ++ T E A +Y H+ E E A+K + ++L H SAR+
Sbjct: 257 TLSEE--TKEYAINYMHSTALEAAEVAKKASVRKLILTHISARY 298
>gi|421618529|ref|ZP_16059504.1| ribonuclease Z [Pseudomonas stutzeri KOS6]
gi|409779282|gb|EKN58940.1| ribonuclease Z [Pseudomonas stutzeri KOS6]
Length = 327
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 40/244 (16%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHTL- 117
I+H H DH GLP +A+ G+ K TII P I+ V E M S L + L
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMMGRKAALTIIAPQGIETWVRATLE----MSQSWLGYALE 115
Query: 118 --VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQ-----EYLGLPGDEIK 170
+GE + ++ ++A H + GY + + + E G+P +
Sbjct: 116 FHAAESLGEWRNL--NMRIEATALSHRVPCYGYSLTEARPDPRLDIGRLERDGVPRGPLW 173
Query: 171 KLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
+ G +I ++T + GD ++ A A++LV E+
Sbjct: 174 GQLARGFDIEHEGRMLRSDDYLSFTRAPRRIVIGGDNDRPELLANA---CQGAQVLVHEA 230
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR--------HKVDEIRRA 269
TY + + + D+GH+ + + +A+ ++L HFSAR H +D++R
Sbjct: 231 TYTE-AVANDARNDFGHSTAASVARFAQTVGLSNLVLTHFSARYQKNAGRGHSIDDLRAE 289
Query: 270 VDAV 273
+A+
Sbjct: 290 ANAL 293
>gi|397686140|ref|YP_006523459.1| ribonuclease Z [Pseudomonas stutzeri DSM 10701]
gi|395807696|gb|AFN77101.1| ribonuclease Z [Pseudomonas stutzeri DSM 10701]
Length = 320
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 32/226 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN-HTL 117
I+H H DH GLP +A+ G+ R + P II P I++ + F + R EL H
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMARRQEPLDIIAPEGIEDWLRATFAMSRTGLPFELRFHAA 119
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI-------- 169
L +R VK H + S GY + K L D I
Sbjct: 120 ESLGQWRTPQVR----VKVAALSHRVPSYGYSFTEARPDPKLAIDRLERDNIPRGPLWGQ 175
Query: 170 -----------KKLKSSGTEITYTVTTPEVAFTGDT-MSDFIVDEANIDVLRARILVMES 217
++L+S T + + + GD + + D A++LV E+
Sbjct: 176 LARGFDVEHEGRRLRSE-TYLDFGRRPRRIVIGGDNDRPELLADTCRA----AQVLVHEA 230
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
TY + T + + +GH+ +++ +AE ++L HFSAR++
Sbjct: 231 TYTQPAATAARGQ-FGHSTAAQVAAFAENVGLPNLVLTHFSARYQA 275
>gi|322368157|ref|ZP_08042726.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
gi|320552173|gb|EFW93818.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
Length = 308
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LFI+H H DHI G+P V T R P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFTVSDLFITHLHGDHILGIPGLVQTWDFNDRDDPLMIYTPR 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+D++ L ++ T V GE R + V+ F+T H S GY +
Sbjct: 93 GTGDDIDALVRTAGHQPSFPIHITEVA--PGEVAIRRDEYEVRTFRTDHDANSLGYALVE 150
Query: 153 VKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFTG 192
++K + E LG+P G + ++L +G + TV PE +TG
Sbjct: 151 DERKGRFDRERAEELGVPVGPKFQQLH-AGNPVELDDGTVVRPEQVVGEPRPGRRFVYTG 209
Query: 193 DTM-SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT ++ +V EA A +LV ++T+ DD ++AR H+ + A + +
Sbjct: 210 DTRPTEQVVSEAE----NADLLVHDATFADDRK--DRARKTAHSTARQAGNVARRADAAR 263
Query: 252 ILLIHFSARH 261
+ + H S+R+
Sbjct: 264 LAITHVSSRY 273
>gi|386021705|ref|YP_005939729.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri DSM
4166]
gi|327481677|gb|AEA84987.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri DSM
4166]
Length = 335
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+ I+H H DH GLP +A+ G+ R P TII P I+ V + + EL+ H
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 117
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIK 170
+ L MR ++A + H + GY + + E+ G+P +
Sbjct: 118 AVETLGEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPRLDIDRLEHDGVPRGPLW 173
Query: 171 KLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
+ G +I +++ + + GD ++ E D A++LV E+
Sbjct: 174 GQLARGFDIEHEGRVLRSHDYLSFSRSPRRIVVGGDNDRPDLLAETCRD---AQLLVHEA 230
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
TY ++ + D+GH+ + + +A+ ++L HFSAR++
Sbjct: 231 TYT-EAVANDARNDFGHSTAATVARFAQAVGLPNLVLTHFSARYQ 274
>gi|448417256|ref|ZP_21579274.1| ribonuclease Z [Halosarcina pallida JCM 14848]
gi|445678479|gb|ELZ30972.1| ribonuclease Z [Halosarcina pallida JCM 14848]
Length = 312
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 37/253 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPS 92
L FD G R + + + LF++H H DH+ G+P V T + P ++ P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFTVSHLFVTHLHGDHVLGIPGLVQTWDFNDREEPLVVHAPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYH-VIQSQGYVVY 151
K + L E +N + + G D V+ F+T H ++S GY +
Sbjct: 93 GSKRHLRNLVESGGYRPGFPIN--IHEVKPGNVALSGGDYEVRTFETNHRNVRSMGYALV 150
Query: 152 SVKQKL-----KQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAFTG 192
++ K E LG+P G +L + E+ TV PE + +TG
Sbjct: 151 EDDRRGRFDREKAEALGVPVGPAFGRLHEGESVELEDGTVVRPEQVVGESRPGRRLVYTG 210
Query: 193 DTMSDFIVDEANIDV-LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT VD A ++V +LV ++T+ DD ++AR GH+ E E A + +
Sbjct: 211 DTRP---VD-ATVEVAAEPDLLVHDATFADDR--ADRARGTGHSTGREAAEIASRAGARR 264
Query: 252 ILLIHFSARHKVD 264
+ L H S+R+ D
Sbjct: 265 LALTHISSRYAGD 277
>gi|399517470|ref|ZP_10759020.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
gi|398647594|emb|CCJ67047.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
Length = 318
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P IK+ V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGPKGIKDFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ + + + E F V A H I++ G+ V + KL+ E +P
Sbjct: 115 YPINYVALQEGIIFDDPTFQVIAAPMRHRIETWGFRVVEKDHPGELLVDKLRAE--NIPS 172
Query: 167 DEIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIVD-------EANIDVL--RARILVM 215
I +G +T T + + G+T +V NI +L A +LV
Sbjct: 173 GPIYGRLKAGKTVTLADGRTISGLDYIGETQKGRVVTLILDTRPNDNIALLAHHADVLVH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
ESTY + AR + H+ A+K + ++L H SAR+
Sbjct: 233 ESTYGASDEESKMARAHAHSTSINAANVAKKAQVGKLVLTHLSARY 278
>gi|156933135|ref|YP_001437051.1| ribonuclease Z [Cronobacter sakazakii ATCC BAA-894]
gi|417792586|ref|ZP_12439923.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449307486|ref|YP_007439842.1| ribonuclease Z [Cronobacter sakazakii SP291]
gi|166991103|sp|A7MHT9.1|RBN_ENTS8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|156531389|gb|ABU76215.1| hypothetical protein ESA_00945 [Cronobacter sakazakii ATCC BAA-894]
gi|333953322|gb|EGL71287.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449097519|gb|AGE85553.1| ribonuclease Z [Cronobacter sakazakii SP291]
Length = 304
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 44/239 (18%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+FI+H H DHI GLP + +R + + P I P I E VE + LN H
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 116 TLVG---LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP 165
+ LD GE L V A+ H ++ GY + + +LK + +P
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 166 GDEIKKLKSSGTEITYT----------VTTP----EVAFTGDT--MSDFIVDEANIDVLR 209
G ++LK G +T ++ P ++A GDT + ++DV+
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVDVM- 228
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T ++ E+A GH+ + E A K +L+ HFS+R+ +E +R
Sbjct: 229 ----VHETTL--EAAMAEKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQR 281
>gi|421786914|ref|ZP_16223297.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
gi|410410524|gb|EKP62428.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
Length = 318
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|448315721|ref|ZP_21505361.1| ribonuclease Z [Natronococcus jeotgali DSM 18795]
gi|445610856|gb|ELY64623.1| ribonuclease Z [Natronococcus jeotgali DSM 18795]
Length = 308
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 31/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH+ GLP + T R P I P + +++ L +
Sbjct: 57 IFVTHLHGDHVLGLPGLLQTMDFNDREDPLAIHAPRGTRRELKSLVHALGNRPSFPVRID 116
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGLP-GDEI 169
VG G + R D + V+AF T H +S GY + +K + E LG+P G +
Sbjct: 117 EVG---GGDVAYRADEYEVRAFATDHDTRSVGYALIEDDRKGRFDRERAEELGVPVGPKF 173
Query: 170 KKLKSSGTEITY---TVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVM 215
+L +G + TV PE + +TGDT EA D +L+
Sbjct: 174 SQLH-AGEPVELEDGTVVDPEQVVGDPRPGRSIVYTGDTRPVAAAIEAADD---PDLLIH 229
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
++T+ DD ++A H+ S+ E A + + + L+H S+R+ D
Sbjct: 230 DATFADDR--ADRAAHTAHSTASQAAEIATRAGAERLALMHLSSRYAGD 276
>gi|424798152|ref|ZP_18223694.1| Ribonuclease Z [Cronobacter sakazakii 696]
gi|423233873|emb|CCK05564.1| Ribonuclease Z [Cronobacter sakazakii 696]
Length = 304
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 40/237 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+FI+H H DHI GLP + +R + + P I P I E VE + LN H
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 116 TLVG---LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP 165
+ LD GE L V A+ H ++ GY + + +LK + +P
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKSGALDAARLKAAGV-MP 170
Query: 166 GDEIKKLKSSGTEITYT----------VTTP----EVAFTGDTMSDFIVDEANIDVLRAR 211
G ++LK G +T ++ P ++A GDT DV
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVNLARDV---D 226
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
++V E+T ++ E+A GH+ + E A K +L+ HFS+R+ +E +R
Sbjct: 227 VMVHETTL--EAAMAEKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQR 281
>gi|345006121|ref|YP_004808974.1| ribonuclease Z [halophilic archaeon DL31]
gi|344321747|gb|AEN06601.1| Ribonuclease Z [halophilic archaeon DL31]
Length = 309
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 51/258 (19%)
Query: 43 FDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + + L +SH H DH+ G+P V T R P I VP
Sbjct: 35 FDCGEGTQRQMMRFGTGFDVDHLLVSHLHGDHVLGIPGLVQTWDFQERESPLAIHVPPDS 94
Query: 95 KEDVEQLFEVHRRMDHS--------ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQ 146
+ +E L + H+ E+ V +D EE+ V++FKT H S
Sbjct: 95 RRQIENLIGA---IGHNAGFPIRIHEVTPGSVAIDA-EEYE------VRSFKTEHRTTSM 144
Query: 147 GYVVYS-------VKQKLKQEYLGLPGDEIKKLKSSGT---------EITYTVTTPE--- 187
GY + +++K ++E PG KL + + + V P
Sbjct: 145 GYALVEDDRPGRFMREKAEKELGIPPGPAYGKLHAGESVELEDGHVIDSDRVVGPPRPGR 204
Query: 188 -VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
+ +TGDT +A +DV L++ DDS +AR GH E E A +
Sbjct: 205 SLVYTGDTRP----IQATVDVTEEPDLLIHDATFDDS-EAGRARSTGHATAREAGEIAAR 259
Query: 247 FENKAILLIHFSARHKVD 264
K + L H S+R+ D
Sbjct: 260 MGAKRLALTHISSRYAGD 277
>gi|448330308|ref|ZP_21519591.1| ribonuclease Z [Natrinema versiforme JCM 10478]
gi|445611987|gb|ELY65728.1| ribonuclease Z [Natrinema versiforme JCM 10478]
Length = 314
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 39/260 (15%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGVPGLLQTMAFNDREEPLAIHTPH 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
++ ++ L + + VG G+ ++ V+ F+T H +S GY +
Sbjct: 93 GTRQQLKSLVNALGNRPSFPVRISEVG--DGDVAYRAEEYEVRTFETDHDTRSVGYALVE 150
Query: 153 VKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAFTGD 193
+K + E LG+P G + +L + E+ TV PE + +TGD
Sbjct: 151 DDRKGRFDRERAEELGVPVGPKFSRLHEGESVELEDGTVVDPEQVVGDPRPGRSIVYTGD 210
Query: 194 TMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T EA ID +L+ ++T+ DD +A D H+ + E A + +
Sbjct: 211 TRP----AEATIDAADEPDLLIHDATFADD--MANRATDTAHSTARQAAEIANRAGADRL 264
Query: 253 LLIHFSAR---HKVDEIRRA 269
L+H S+R H D R+A
Sbjct: 265 ALMHLSSRYAGHTEDHERQA 284
>gi|421651875|ref|ZP_16092242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425750040|ref|ZP_18868007.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|445460325|ref|ZP_21448234.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
gi|408507808|gb|EKK09502.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425487442|gb|EKU53800.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|444773560|gb|ELW97656.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
Length = 318
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|336392452|ref|ZP_08573851.1| beta-lactamase superfamily hydrolase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 294
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 43 FDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSC 93
FD+G R R +FI+H H DHI GLP ++++R +P TI P
Sbjct: 36 FDVGEGTQQQILRTAIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGNQPLTIYGPKG 95
Query: 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY 151
+++ V+ R+ S L + + +++ + + +D V+ K H I S GY V
Sbjct: 96 VRDYVQTSL----RVSDSRLTYPIKYVEITDNMLVFEDDTFKVECRKLDHRIASFGYRVI 151
Query: 152 S-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIVD- 201
+ KL+ + PG E K+K +G +T P F G IV
Sbjct: 152 EKDHTGELLVDKLRAAGIK-PGPEYGKIK-AGQPVTLADGQVLPSSDFIGPAQKGRIVTI 209
Query: 202 ------EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
AN L A +LV EST+ A +Y H+ ++ E A+K K +L
Sbjct: 210 LGDTRRTANCFTLAENADVLVHESTF--GKADGRMAYNYYHSTSTQAAEVAKKSHVKQLL 267
Query: 254 LIHFSARH 261
L H SAR+
Sbjct: 268 LTHISARY 275
>gi|163791324|ref|ZP_02185737.1| metal-dependent hydrolase of the beta-lactamase superfamily III
(putative) [Carnobacterium sp. AT7]
gi|159873403|gb|EDP67494.1| metal-dependent hydrolase of the beta-lactamase superfamily III
(putative) [Carnobacterium sp. AT7]
Length = 312
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK V + + L ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDGPLTIYGPVGIKNYVLTCL----KTSGTALKYS 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVV-----YSVKQKLKQEYLGLP-GDE 168
L ++ E+ + +D V K H IQS GY + + Q K + G+P G
Sbjct: 115 LNFHEIVEDGILFEDSHFKVSCGKLKHGIQSFGYRIEEADHQGMLQADKLKEAGIPFGPL 174
Query: 169 IKKLKSSGTEITYTVTTPEV----AFTGDTMSDFIV--------DEANIDVLR-ARILVM 215
KLK T T+ V F G+T IV E N+ + + A +LV
Sbjct: 175 FGKLKQGK---TITLEDGRVFNGQDFIGETQKGRIVTILGDTKKTENNVLLAKNASVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + ARDY H+ + + A++ +LL H SAR+
Sbjct: 232 ESTF--DGANQKMARDYNHSTNIDAAQVAKEAGVDKLLLTHISARY 275
>gi|409395148|ref|ZP_11246254.1| ribonuclease Z [Pseudomonas sp. Chol1]
gi|409120196|gb|EKM96556.1| ribonuclease Z [Pseudomonas sp. Chol1]
Length = 321
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 46/249 (18%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-- 114
+FI+H H DH GLP +A+ G+ R P II P E + + RM H+ L
Sbjct: 58 IFITHVHGDHCYGLPGLLASAGMMGRRHPLEIIAP----EGIADWLQATLRMSHAWLGYE 113
Query: 115 ---HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK--QKLKQEYL---GLPG 166
H + L MR V A H + GY + +L E L G+P
Sbjct: 114 LTFHAVESLGEWRSLNMR----VAATALSHRVPCYGYSFTEARPDPRLNIERLERDGVPR 169
Query: 167 DEIKKLKSSGTE-------------ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARIL 213
+ + G + +++T V GD ++ EA A++L
Sbjct: 170 GPLWGQLARGFDLEHEGRTLRSEDYLSFTRAPRRVVIGGDNDQPPLLAEA---CRGAQVL 226
Query: 214 VMESTYVDDSTTVEQARD-YGHTHLSEIVEYAEKFENKAILLIHFSAR--------HKVD 264
V E+TY T VE + + +GH+ +++ +A++ E ++L HFSAR H ++
Sbjct: 227 VHEATY--SQTLVETSGNTFGHSSAAQVAAFAQQAEVPNLVLTHFSARYQPGSQRGHSIE 284
Query: 265 EIRRAVDAV 273
EIR+ A
Sbjct: 285 EIRQEAAAA 293
>gi|262046039|ref|ZP_06019003.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295692862|ref|YP_003601472.1| ribonuclease z [Lactobacillus crispatus ST1]
gi|260573998|gb|EEX30554.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295030968|emb|CBL50447.1| Ribonuclease Z [Lactobacillus crispatus ST1]
Length = 312
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI PS I+E V +V R +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSR----TKISYP 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY-----HVIQSQGYVVYSVKQ-------KLKQEYLGL 164
+ +++ + + +D K F+ Y H I S G+ V KL Q Y
Sbjct: 115 IRFVELAKSGLICED---KGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKLAQ-YNVP 170
Query: 165 PGDEIKKLKSSGTEITYTVTT--PEVAFTGDTMSDFIV-----DEANIDVLR----ARIL 213
G + KLK +G ++T T F G T S IV + + R A +L
Sbjct: 171 NGPLLGKLK-NGEKVTLADGTVLDGKNFLGPTKSGRIVTVIYDTRSTPSIARLAKDADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D + A DY H+ E + A K K + L H SAR+
Sbjct: 230 VHESTFAGDEQKL--AHDYYHSTSVEAAKIARKDNVKLLCLNHISARY 275
>gi|389571762|ref|ZP_10161851.1| ribonuclease Z [Bacillus sp. M 2-6]
gi|388428656|gb|EIL86452.1| ribonuclease Z [Bacillus sp. M 2-6]
Length = 309
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 113/252 (44%), Gaps = 37/252 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI PS IK V + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGENELTIYGPSGIKAFVNATLSA----TQTHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYL---GL-PGDEI 169
L +++ E + F V+A + H I + GY V V LK E L G+ PG
Sbjct: 115 LHIIEIEEGIVFEDETFQVEARRVAHGIPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLY 174
Query: 170 KKLKSSGT---------EITYTVTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+KLK+ T + T + P+ VAF+GDT + + I A A +LV
Sbjct: 175 QKLKNGETVTLEDGRMIDGTNYLEPPKKGRIVAFSGDTRLCENITRLAK----NADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE-----IRRAV 270
E+T+ + E A +Y H+ + + A++ K ++L H SAR++ +E ++ A
Sbjct: 231 EATFGKED--AELAYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEESMKQLLKEAR 288
Query: 271 DAVPAPLAGRVF 282
D P A F
Sbjct: 289 DIFPLTEAAHDF 300
>gi|421654189|ref|ZP_16094520.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
gi|408512039|gb|EKK13686.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
Length = 324
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 46/241 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEATPPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPKGDMW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFI-VDEANIDVL----------------RA 210
LK +V F G + DFI + I + A
Sbjct: 177 GHLKQG----------YDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADTCKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
++L+ ESTY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A
Sbjct: 227 QLLIHESTYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 270 V 270
+
Sbjct: 285 I 285
>gi|169795341|ref|YP_001713134.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213158673|ref|YP_002319971.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|215482875|ref|YP_002325078.1| ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|301347162|ref|ZP_07227903.1| Ribonuclease Z [Acinetobacter baumannii AB056]
gi|301511969|ref|ZP_07237206.1| Ribonuclease Z [Acinetobacter baumannii AB058]
gi|301595649|ref|ZP_07240657.1| Ribonuclease Z [Acinetobacter baumannii AB059]
gi|332850452|ref|ZP_08432772.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332871904|ref|ZP_08440316.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|417573750|ref|ZP_12224604.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|421620409|ref|ZP_16061346.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|421642704|ref|ZP_16083216.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|421646873|ref|ZP_16087312.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|421660284|ref|ZP_16100484.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|421701088|ref|ZP_16140596.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|421795459|ref|ZP_16231542.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|421802277|ref|ZP_16238230.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
gi|169148268|emb|CAM86133.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213057833|gb|ACJ42735.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|213986249|gb|ACJ56548.1| Ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|332730723|gb|EGJ62034.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332731118|gb|EGJ62419.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|400209318|gb|EJO40288.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|404568142|gb|EKA73248.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|408512156|gb|EKK13802.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|408517019|gb|EKK18570.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|408700704|gb|EKL46152.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|408705308|gb|EKL50650.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|410401956|gb|EKP54091.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|410404074|gb|EKP56147.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
Length = 318
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQEY---LGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|154483096|ref|ZP_02025544.1| hypothetical protein EUBVEN_00797 [Eubacterium ventriosum ATCC
27560]
gi|149735904|gb|EDM51790.1| ribonuclease Z [Eubacterium ventriosum ATCC 27560]
Length = 302
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 24/220 (10%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + I+H H DHI GLP + T G R +P T+I P + + V L + + +
Sbjct: 55 DVICITHYHADHISGLPGLLLTMGNAERTEPLTMIGPRGLTKVVNALRTIAPEL---PFD 111
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLKQEY---LGLPGDEIK 170
+ L GE+ +D +KAF+ H I GY + K E L +P
Sbjct: 112 INFIELTEGEQTLEFEDFRIKAFRVKHNIVCYGYSIEIDRGGKFNPEAAKKLNIPIRSWG 171
Query: 171 KLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMEST 218
KL+ T E+ TP+ V +T DT ++ EA A + + E
Sbjct: 172 KLQKGETVEVDGVTFTPDMVVGAPRKGLKVTYTTDTRPVPVIAEA---AKGADLFICEGM 228
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
Y + +AR++ H E + A++ + K + L HFS
Sbjct: 229 YGEPDKDA-KAREHKHMTFKEAAKIAKEAQPKEMWLTHFS 267
>gi|398304556|ref|ZP_10508142.1| ribonuclease Z [Bacillus vallismortis DV1-F-3]
Length = 307
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 34/250 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
LV ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LVIREIEEGIVFEDDQFVVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+K+K+ T E T+ + V F+GDT + D+ +LV E
Sbjct: 175 QKIKNGETITLEDGRTINGNDFLEPPKKGRAVVFSGDTR---VSDKLKALARDCDVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI----RRAVDA 272
+T+ + + A DY H+ + A++ K ++L H SAR++ D + A D
Sbjct: 232 ATFAKEDRKL--AYDYFHSTTEQAAITAKEAGAKKLILTHISARYQGDSSLELQKEAADV 289
Query: 273 VPAPLAGRVF 282
P +A F
Sbjct: 290 FPNSVAAYDF 299
>gi|445400654|ref|ZP_21430125.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
gi|444783228|gb|ELX07089.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
Length = 318
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|333395089|ref|ZP_08476908.1| beta-lactamase superfamily hydrolase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420146733|ref|ZP_14654114.1| Ribonuclease Z (RNase Z) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398400711|gb|EJN54250.1| Ribonuclease Z (RNase Z) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 317
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 43 FDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSC 93
FD+G R R +FI+H H DHI GLP ++++R +P TI P
Sbjct: 36 FDVGEGTQQQILRTAIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGNQPLTIYGPKG 95
Query: 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY 151
+++ V+ R+ S L + + +++ + + +D V+ K H I S GY V
Sbjct: 96 VRDYVQTSL----RVSDSRLTYPIKYVEITDNMLVFEDDTFKVECRKLDHRIASFGYRVI 151
Query: 152 S-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIVD- 201
+ KL+ + PG E K+K +G +T P F G IV
Sbjct: 152 EKDHTGELLVDKLRAAGIK-PGPEYGKIK-AGQPVTLADGQVLPSSDFIGPAQKGRIVTI 209
Query: 202 ------EANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
AN L A +LV EST+ A +Y H+ ++ E A+K K +L
Sbjct: 210 LGDTRRTANCFTLAENADVLVHESTF--GKADGRMAYNYYHSTSTQAAEVAKKSHVKQLL 267
Query: 254 LIHFSARH 261
L H SAR+
Sbjct: 268 LTHISARY 275
>gi|332159416|ref|YP_004424695.1| ribonuclease Z [Pyrococcus sp. NA2]
gi|331034879|gb|AEC52691.1| ribonuclease Z [Pyrococcus sp. NA2]
Length = 307
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 32/246 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH G+P V T L++ + P I P +E L + + E
Sbjct: 57 IFITHFHGDHYLGIPALVQTMSLWKRRDPLHIYGPEGASTFIENLL----KSGYFEPPFD 112
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGL-PGDEI 169
++ ++ ++ ++ + + + +F+ H I + GYV ++ K + LGL PG +
Sbjct: 113 VIVHEIPGKYRLKFENYEIWSFEVSHGIPALGYVFKERDKRGNFDLEKIKRLGLKPGSWM 172
Query: 170 KKLKS------SGTEITYT-VTTP-----EVAFTGDTMSDFIVDEANIDVLRARILVMES 217
K+L+ +GT I + VT P ++ +TGDT + + RA IL+ E+
Sbjct: 173 KELEKKKILEINGTIIRLSDVTGPKKRGAKIVYTGDTEP---CENVTLFSKRATILIHEA 229
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV-DAVPAP 276
TYV + ++ Y HT + E E + K +++ H R+ E +R V + P
Sbjct: 230 TYVSEE---DRGESY-HTTIREACETWHDSKAKMLVMFHRGPRYSYAEYKRKVFEICPQA 285
Query: 277 LAGRVF 282
+ R F
Sbjct: 286 IVPRDF 291
>gi|323488957|ref|ZP_08094194.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
gi|323397349|gb|EGA90158.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
Length = 314
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P I P IKE ++ + R + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLEIYGPVGIKEYIQMTLTLSR----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKL---KQEYLGLP-GDEI 169
+V ++ E +L V+ HVI S G+ + + KL K LG+P G +
Sbjct: 115 IVYHELSEGMIFEDELMTVETRLLDHVIPSYGFRITQKPLPPKLLINKALSLGVPKGPLL 174
Query: 170 KKLKSSGTEITYT---------VTTPE-VAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
KLK +G +I VT PE F + D + +++ R A +LV E+T
Sbjct: 175 AKLK-TGQDIELADGQWVRSGDVTEPEQPGFVMTILGDTRFCKTAVELGRGADVLVHEAT 233
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+ D+T + A +YGH + + E A +++ H SAR
Sbjct: 234 F--DATAKKMAAEYGHATVYDAAETARLAGANTLIMNHISAR 273
>gi|335433808|ref|ZP_08558624.1| ribonuclease Z [Halorhabdus tiamatea SARL4B]
gi|334898446|gb|EGM36554.1| ribonuclease Z [Halorhabdus tiamatea SARL4B]
Length = 331
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 36/249 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + +F+SH H DH+ G+P + T R P I P
Sbjct: 55 LLFDCGEGTQRQMMHFGTGFDVAHIFVSHMHGDHVLGIPGLLQTMDFNDREDPLAIHAPH 114
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ +E L L T G G+ + V+A +T H QS GY +
Sbjct: 115 GTRSRLEDLISATGDRPSYPLRITQNG--PGDVVLDAEGYEVRAVETEHRTQSIGYALVE 172
Query: 153 VKQKLK------QEYLGL-PGDEIKKLKSSGTEITYTVTT--PE-----------VAFTG 192
+K + + LG+ PG + KL +G + + T PE V +TG
Sbjct: 173 DDRKGRFDREKAEHELGISPGPKYSKLH-AGEAVEHDGRTIQPEEVVGPPRPGRTVVYTG 231
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT V EA+ D A +L+ ++T+ DD E+A+ GH+ E A + + K +
Sbjct: 232 DTRPVGAVLEASED---ADLLIHDATFGDDR--AERAQRTGHSTAREAGSLAAEADVKRL 286
Query: 253 LLIHFSARH 261
L H S R+
Sbjct: 287 ALTHISTRY 295
>gi|268323331|emb|CBH36919.1| ribonuclease Z [uncultured archaeon]
Length = 335
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 29/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ G+P + T L R +P I P + + + L + ++ N
Sbjct: 84 IFISHFHADHVLGIPGLLQTMALQDRQEPLEIYGPKQVDKFLYHLLA----LGYAGRNFE 139
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGL-PGDEI 169
+ +++ +R+ + ++ KT H I S GYV+ + + K LG+ PG
Sbjct: 140 VKAIELRPGDVVRRAGYEIRVIKTVHNILSIGYVLEEDMRPGRFNREKAIELGIKPGPFF 199
Query: 170 KKLKSS------GTEIT--YTVTTP----EVAFTGDTMSDFIVDEANIDVLRARILVMES 217
KL+S G EI V P ++ +TGDT V EA+ + A +L+ +S
Sbjct: 200 SKLQSGRSILLDGKEIRPEQVVGPPRPGRKIVYTGDTRPCDSVIEASEN---ADLLIHDS 256
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T ++ T E A +Y H+ E E A+K + ++L H SAR+
Sbjct: 257 TLSEE--TKEYAINYMHSTALEAAEVAKKASVRKLILTHISARY 298
>gi|424034510|ref|ZP_17773915.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-01]
gi|408872698|gb|EKM11908.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-01]
Length = 322
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 36/235 (15%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRM 108
LS N+L I+H H DH GLP +A+ G+ K P TII P E ++Q FE +
Sbjct: 50 LSLNYLRAICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP----EGIKQWFEATQAF 105
Query: 109 DHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV-------VYSVKQKLKQE 160
L L ++V + + F + A H + S Y +Y KL+Q
Sbjct: 106 TKLYLPFELHFIEVEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQ- 164
Query: 161 YLGLPGDEIKKLKSSGTEITYTVTT-------------PEVAFTGDTMSDFIVDEANIDV 207
L +P I G ++ Y T +V GD +D +
Sbjct: 165 -LNIPRGPIWGELVRGNDVEYQGQTLMSKAFTKLAHPPRKVIICGDNDKPEKLDSL---I 220
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV ESTY + E+A + GH + S++ YA+ + +++L HFS R++
Sbjct: 221 EGAHLLVHESTYSE--AMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQ 273
>gi|227544989|ref|ZP_03975038.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|338204259|ref|YP_004650404.1| ribonuclease Z [Lactobacillus reuteri SD2112]
gi|133930541|gb|ABO43841.1| metal-dependent hydrolase [Lactobacillus reuteri]
gi|227185032|gb|EEI65103.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|336449499|gb|AEI58114.1| ribonuclease Z [Lactobacillus reuteri SD2112]
Length = 309
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P TI P IK V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPIGIKRYVQTSLQV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ ++ + D V A K H I GY + +KL+++ +P
Sbjct: 115 LHFVEITDDGELFNDHGFRVIARKLDHKIACFGYRIEEADHPGELQVEKLREQ--KVPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
I +G +T + TP+ +A GDT A + A +L
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQ---TKNAILLAQNADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D T + A +Y H+ + E A+K K +LL H SAR+
Sbjct: 230 VHESTFAKDETKM--AYNYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|435849199|ref|YP_007311449.1| RNAse Z [Natronococcus occultus SP4]
gi|433675467|gb|AGB39659.1| RNAse Z [Natronococcus occultus SP4]
Length = 308
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 31/234 (13%)
Query: 52 ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDH 110
A+SQ +F++H H DH+ GLP + T R I P + +++ L E
Sbjct: 53 AVSQ--IFVTHLHGDHVLGLPGLLQTMDFNDREDALAIHAPRGTRRELKSLVEALGNRPS 110
Query: 111 SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGL 164
+ VG G + R D + V+AF T H +S GY + +K + E LG+
Sbjct: 111 FPVRINEVG---GGDVAYRADEYEVRAFATDHDTRSVGYALVEDDRKGRFDRERAEELGV 167
Query: 165 P-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRA 210
P G + L + E+ TV PE + +TGDT EA +
Sbjct: 168 PVGPKFSTLHEGESVELEDGTVVDPEQVVGAPRPGRSIVYTGDTRPTAGTIEAADE---P 224
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+L+ ++T+ DD E+A D H+ + E + + + L+H S+R+ D
Sbjct: 225 ELLIHDATFADDR--AERAADTAHSTARQAAEIGNRAGAERLALMHLSSRYAGD 276
>gi|407797337|ref|ZP_11144281.1| ribonuclease Z [Salimicrobium sp. MJ3]
gi|407018300|gb|EKE31028.1| ribonuclease Z [Salimicrobium sp. MJ3]
Length = 310
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 24/239 (10%)
Query: 48 CPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHR 106
P +A +FI+H H DHI GLP ++++R +P T+ P ++E VE
Sbjct: 49 SPVKARRIEKVFITHLHGDHIYGLPGFLSSRSFQGGSEPLTVYGPEGLQEFVESAL---- 104
Query: 107 RMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQE 160
R+ + L + L + E F + F + A H + S G+ + QK K E
Sbjct: 105 RISGTHLTYDLHFRTIEEGFREENEQFEISAHLLEHGLPSYGFFIKEKPKPGALQKEKLE 164
Query: 161 YLGL-PGDEIKKLKSSGTEI---------TYTVTTPEVAFTGDTMSDFIVDEANIDVLR- 209
+G+ PG + +K+ T I + ++ P+ + + D E +++ ++
Sbjct: 165 AMGIRPGPVYQTIKNQETTILENGTVVQRSDVLSAPKPGRSVAILGDTRFRERHMEWIKG 224
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
A +L+ E T+ + + A DY H+ + + E A + A+ + H S+R++ ++I R
Sbjct: 225 ADVLIHEGTFEGKESRM--AYDYYHSTVVQAAETAAQSGVDALYINHLSSRYQREDIVR 281
>gi|448337561|ref|ZP_21526638.1| ribonuclease Z [Natrinema pallidum DSM 3751]
gi|445625467|gb|ELY78827.1| ribonuclease Z [Natrinema pallidum DSM 3751]
Length = 314
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 36/249 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFAVSHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHTPH 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ ++ L + +G G+ ++ V+AF+T H +S GY +
Sbjct: 93 GTRRQLKGLVNALDNRPSFPVRINEIG--AGDVAYRAEEYEVRAFETDHDTRSVGYALVE 150
Query: 153 VKQK-----LKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+K + E LG+P G+ ++ S + V P + +TGD
Sbjct: 151 DDRKGRFDRERAEELGVPVGPKFSKLHAGESVELEDGSVVDPDQVVGDPRPGRTIVYTGD 210
Query: 194 TMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T EA I+V +L+ ++T+ DD E+A D H + E A + +
Sbjct: 211 TRP----AEATIEVADDPDLLIHDATFADDR--AERAADTAHATARQAAEIANRAGAARL 264
Query: 253 LLIHFSARH 261
L+H S+R+
Sbjct: 265 ALLHISSRY 273
>gi|160902038|ref|YP_001567619.1| beta-lactamase domain-containing protein [Petrotoga mobilis SJ95]
gi|160359682|gb|ABX31296.1| beta-lactamase domain protein [Petrotoga mobilis SJ95]
Length = 275
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 32/253 (12%)
Query: 26 SIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRGL 80
S A + T + + + FD G S L + ++H+H+DHI GL V TR
Sbjct: 7 SKALYTTWVFYKPDRILFDAGEGVSAELGNKIYGIEKIILTHSHVDHIAGLWGIVNTRNN 66
Query: 81 ---YRMKPPTIIVPS---CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFV 134
R K I P I E ++ + ++++R+ + E++ + L + + F+
Sbjct: 67 AMGNRNKKLEIYYPQGSENINEYLKFIGKMNKRLRY-EIDFREITL--SDTIPLNNKRFI 123
Query: 135 KAFKTYHVI--QSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE-ITYTVTTPEVAFT 191
K FKT H S GY + +++LK+EY L EIK L + E I T + +
Sbjct: 124 KPFKTRHTPGETSFGYQILEQRKRLKEEYRELKESEIKDLIINKKEDILENYTANILTIS 183
Query: 192 GDTM---SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
GD++ +F D L+ E T+ D+ + + HT L+E+ +
Sbjct: 184 GDSLPIPPNFAKD--------CGTLLHECTFFDE----KDRKIRNHTSLAELKNLINISK 231
Query: 249 NKAILLIHFSARH 261
K +++ H S+R+
Sbjct: 232 PKRVIIYHVSSRY 244
>gi|407476796|ref|YP_006790673.1| ribonuclease Z [Exiguobacterium antarcticum B7]
gi|407060875|gb|AFS70065.1| Ribonuclease Z [Exiguobacterium antarcticum B7]
Length = 301
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 115/268 (42%), Gaps = 37/268 (13%)
Query: 33 CIIFPSLDLAFDIGRC--------PSRALSQNFLFISHAHMDHIGGLPMYVATR----GL 80
++ P + FD G P + + +FI+H H DHI GLP +++TR G
Sbjct: 23 ALLHPKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGT 82
Query: 81 YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY 140
R+ TI P ++E +E V L+ ++ ++ G+ + ++ V
Sbjct: 83 TRL---TIYGPKGLREWLEATLRVTGTYLRYPLD--IIEVEAGQTY-QQEGFRVTVEALE 136
Query: 141 HVIQSQGYVVYSVKQK------LKQEYLGLP-GDEIKKLKS------SGTEITYT--VTT 185
H + GY + ++K QE LG+P G +++K G E + T
Sbjct: 137 HRFLAYGYRIEGEEEKGALLVEALQE-LGIPSGPLYRRIKQDSMFVFDGVEYQSADFLGT 195
Query: 186 PEVAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
P+ + D I +I + + +LV E+T+ D + A +GH+ + E A
Sbjct: 196 PKPGVKLAILGDTIPCAGSIRLAQEVDVLVHEATFADSEE--DHAGRFGHSTARQAAEIA 253
Query: 245 EKFENKAILLIHFSARHKVDEIRRAVDA 272
+ + K +LL H SAR+ E R +A
Sbjct: 254 RQAQAKKLLLTHISARYVDQEQRLEAEA 281
>gi|425745538|ref|ZP_18863582.1| putative ribonuclease Z [Acinetobacter baumannii WC-323]
gi|425488546|gb|EKU54881.1| putative ribonuclease Z [Acinetobacter baumannii WC-323]
Length = 320
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R P TII P ++++Q EV ++ L + L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTAPLTIIAP----KEIQQWIEVTAQLTDLHLPYPLK 116
Query: 119 GLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQE---YLGLPGDEIK 170
+DV E + +L ++A H + S + + + ++KL + LG+P +
Sbjct: 117 FIDVNEATQILSLTDELSIQAHPLSHRVPSFAFSIIAQYTQKKLDTQALVQLGVPKGKAW 176
Query: 171 KLKSSGTEITYTVTTPEVA-FT------------GDTMSDFIVDEANIDVLRARILVMES 217
G +I + T + FT GD ++++A DV ++L+ ES
Sbjct: 177 GDLQHGQDIQFNQQTLKATDFTQIQTQRIHAIVGGDNDRPELLEKACQDV---QLLIHES 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY + + H+ + ++A++ ++L HFSARH+ D ++A+
Sbjct: 234 TYTQ-AVLDKVGSGPMHSSAKSVAKFAQQQGLSNLILTHFSARHQDDAGQQAI 285
>gi|440290255|gb|ELP83681.1| zinc phosphodiesterase, putative [Entamoeba invadens IP1]
Length = 267
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 60/266 (22%)
Query: 43 FDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCI 94
FD G + L+Q LFI+H+H+DH+GG+ ++ + + TI+ P
Sbjct: 36 FDCGDGVTYLLAQMKVPAQRIRILFITHSHIDHVGGIVSFIHSVVFATPQQLTIVAPKGT 95
Query: 95 KEDVEQLFEVHRR--------MDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQ 146
KE EQ F+ R +D+ ++N T V + C+ H+
Sbjct: 96 KELAEQAFKFSREEFPKTITFIDYDDVNPTKVSYKNCDFTCV---------PIPHMPDVP 146
Query: 147 GYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT-----MSDFIVD 201
G+ + ++E L TGDT M+ +I++
Sbjct: 147 GHAILCQLHYERKEDKTL------------------------VVTGDTTSMSPMTTYILE 182
Query: 202 EANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
++ ++V E T+ DD ++++ +GH+ + E +KF K +L HFS+R+
Sbjct: 183 NH----IQVNVIVHECTFDDDLK--DKSKQWGHSCPEIVSEEIKKFVPKKCILHHFSSRY 236
Query: 262 KVDEIRRAVDAVPAPLAGRVFALTEG 287
++R + V F +G
Sbjct: 237 SQSYVQRMAEKVKNTTGVETFVAKDG 262
>gi|366089332|ref|ZP_09455805.1| ribonuclease Z [Lactobacillus acidipiscis KCTC 13900]
Length = 317
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV---PSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R PT + P+ I++ V+ V R +LN
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQNGDDPTTLTIYGPAGIEDFVKTSLRVSRTKLAYKLN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTY-HVIQSQGYVVYSVK-------QKLKQEYLGLPG 166
+G + G+ F D F +FK H I GY V +KLK+ L +P
Sbjct: 119 FIELG-EAGQIF--ENDRFKVSFKYLEHRIPCVGYRVEEKDYPGELQVEKLKE--LQVPA 173
Query: 167 DEI-KKLKS------------SGTEITYTVTTPE-VAFTGDTMSDFIVDEANIDVLRAR- 211
I +LK+ +GT+ + V GDT S NI+ L A
Sbjct: 174 GPIYGRLKAGETVTLADGRQINGTDFIGSAKKGRIVTILGDTRS-----TPNIEKLAANA 228
Query: 212 -ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV ESTY + AR Y H+ + + A+K + +LL H SAR+
Sbjct: 229 DALVHESTYGKGDAKL--ARAYYHSTCIQAAQVAKKTGVRKLLLTHISARY 277
>gi|18313915|ref|NP_560582.1| hypothetical protein PAE3218 [Pyrobaculum aerophilum str. IM2]
gi|41017572|sp|Q8ZTJ7.1|RNZ_PYRAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|18161484|gb|AAL64764.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 287
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 45/236 (19%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQ 100
IG PS S + ++H H DHI GLP V T R+K ++ P + + +
Sbjct: 48 LQIGISPS---SLTLIAVTHMHEDHILGLPGLVITSKFLGGRLK---VLAPKSMHGALSK 101
Query: 101 LFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLK- 158
L G++V + + + +K + H + + G+++ + V KL
Sbjct: 102 L-----------------GVEVADSY-EEERFKIKCVEVCHTVDACGWLIQWDVGYKLDL 143
Query: 159 QEYLGLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEANI 205
+ GLP + +L K +I + TPE + +TGDT E
Sbjct: 144 SKTSGLPKWALTELIKGKPVKIGDRIITPEEVADPAHKRFKYLLYTGDTAP---CPEMWK 200
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V +L+ E+T+ DD + +A + GH+ +++ +E A + ++L H SAR+
Sbjct: 201 KVGSVDVLIHEATFADD-VSPSKAHEEGHSTVADAIEAARALNAQVLILTHVSARY 255
>gi|386714729|ref|YP_006181052.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
gi|384074285|emb|CCG45778.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
Length = 308
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R + P T+ P +KE + ++ ++ + L +
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGETPVTVYGPRGLKEYI----DITLQISGTHLRYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL------KQEYLGL-PGDE 168
L +V E D F V+A H ++S GY++ + K K+ K + LGL PG
Sbjct: 115 LYVEEVEEGILFEDDQFVVEAVSLQHGLESYGYIL-TEKDKIGELKPSKLKELGLEPGPI 173
Query: 169 IKKLKSSGT------EITYT--VTTP-----EVAFTGDTMSDFIVDEANIDVLRARILVM 215
+ +KS +I Y V P +++ GDT + + V + +LV
Sbjct: 174 YQLIKSQSQTRLDNGKIIYRKDVLGPPKKGRKISILGDTR---YIPDLKYKVKDSDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T+ D + A DY H+ + + A++ + ++L H S+R++ +++
Sbjct: 231 EATFASDEN--QMAYDYFHSTVQQAATLAKEANVRELILNHISSRYQGSSLKQ 281
>gi|417545642|ref|ZP_12196728.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|421668421|ref|ZP_16108460.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|421671576|ref|ZP_16111546.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
gi|400383530|gb|EJP42208.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|410380313|gb|EKP32901.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|410381538|gb|EKP34103.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
Length = 318
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP----KEIQQWFEITAQLTDLYLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|157692882|ref|YP_001487344.1| ribonuclease Z [Bacillus pumilus SAFR-032]
gi|157681640|gb|ABV62784.1| ribonuclease Z [Bacillus pumilus SAFR-032]
Length = 309
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 37/253 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVNATLSATQ----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYL---GL-PGDEI 169
L +++ E D F V+A + H I + GY V V LK E L G+ PG
Sbjct: 115 LHIIEIDEGVVFEDDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLY 174
Query: 170 KKLKSSGT---------EITYTVTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+KLK+ T + T + P+ VAF+GDT + + I A A +LV
Sbjct: 175 QKLKNGDTVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAK----DADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE-----IRRAV 270
E+T+ + + A +Y H+ + + A++ K ++L H SAR++ +E ++ A
Sbjct: 231 EATFGKEDADL--AYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALNQLLKEAR 288
Query: 271 DAVPAPLAGRVFA 283
D P A + F+
Sbjct: 289 DIFPLTEAAQDFS 301
>gi|241896329|ref|ZP_04783625.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
gi|241870309|gb|EER74060.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
Length = 339
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 44/252 (17%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSC 93
FD+G R + Q+ + FI+H H DHI GLP +++R + TI P
Sbjct: 49 FDVGEGTQRQMLQSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDELTIYGPKG 108
Query: 94 IKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
I+ Q EV R+ + L + + V L V ++ D F V A H I S GY V
Sbjct: 109 IR----QFVEVSLRVSQTHLTYPIKFVELPVDGGDVLQTDKFTVSALPLDHRITSFGYRV 164
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT----------VTTPE----VA 189
+ ++L++ L +P + G ++T + P+ VA
Sbjct: 165 TEHAHPGELLVERLRE--LNVPAGPLYGQLKQGNDVTLADGRTIHGADVIGAPQPGRCVA 222
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
GDT + A +LV ESTY +QAR++ HT + A++ +
Sbjct: 223 IIGDTRK---TNNTMTLARNADVLVHESTYGKGEG--KQARNHFHTTSVQAATIAKQAQV 277
Query: 250 KAILLIHFSARH 261
+LL H SAR+
Sbjct: 278 GRLLLTHISARY 289
>gi|290769886|gb|ADD61657.1| putative protein [uncultured organism]
Length = 322
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 17/214 (7%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + ++H H DHI GLP + T L R P TI P + + + + +
Sbjct: 81 DAVLLTHYHGDHILGLPGLLQTLASLNRTAPLTIYGPPGQESIAAAIMALAGPLPYP--- 137
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ----KLKQEYLGLPGDEIK 170
V + E C L V F H + GY ++ + + + G+P + +
Sbjct: 138 ---VAWKIAEGTCKEAGLTVTPFPLKHRVPCCGYRLHLPRAGRFDAARAKAAGIPLEYWR 194
Query: 171 KLKSS----GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTT 225
L++ G + P T +D A ++ R A +L M+STY DD T
Sbjct: 195 VLQAGQSIGGFAPGDVLGPPRRGLTVVYATDTRPCPAVLEAARGADLLCMDSTYADD-TD 253
Query: 226 VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259
+ +A+ YGH E A + + + + L H+SA
Sbjct: 254 LPKAKLYGHATCRETGALAAEAKVRRLWLTHYSA 287
>gi|260554454|ref|ZP_05826675.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410996|gb|EEX04293.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452950718|gb|EME56172.1| ribonuclease Z [Acinetobacter baumannii MSP4-16]
Length = 318
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R P +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP----KEIQQWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + ++ GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|418032447|ref|ZP_12670930.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471310|gb|EHA31431.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 307
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 34/250 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+K+K T E + E V F+GDT + E D +LV E
Sbjct: 175 QKIKKGETVTLEDGRIINGNEFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVDA 272
+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 232 ATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDV 289
Query: 273 VPAPLAGRVF 282
P +A F
Sbjct: 290 FPNSVAAYDF 299
>gi|297618954|ref|YP_003707059.1| ribonuclease Z [Methanococcus voltae A3]
gi|297377931|gb|ADI36086.1| ribonuclease Z [Methanococcus voltae A3]
Length = 336
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 50/262 (19%)
Query: 43 FDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSC 93
FD G R + N +FISH H DHI GL + + L R KP I P
Sbjct: 33 FDCGENVQRQMMSTNVSPMKINNIFISHLHGDHILGLGGLLQSMALSNRKKPLKIFGPPK 92
Query: 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKD---LFVKAFKTYHVIQSQGYVV 150
I E VE + ++ ++ + L + + + + T H + S Y+
Sbjct: 93 ITETVENILKIGYHSISYDIEVVELELKPNKILSVNNSGNGYEIYCYPTNHSVPSLAYIF 152
Query: 151 YSVKQK----LKQEYLGLP-GDEIKKLKS----------SGTEITYTVTTPEV------- 188
+K K + LG+ G ++K LK +G + T+ +V
Sbjct: 153 KELKAPKMDMAKVKNLGIEIGSKLKDLKDGKSVEIETFENGKSVKKTIIPQDVLVKNTEG 212
Query: 189 ---AFTGDT-----MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEI 240
A++GDT + F+ D L ++LV E+T+ DS+ +E A + H+ E
Sbjct: 213 VSFAYSGDTRPVYAFAMFLKD------LNCKVLVHEATF--DSSLLENALETMHSTFGEA 264
Query: 241 VEYAEKFENKAILLIHFSARHK 262
++ +E E K +++ H SAR++
Sbjct: 265 LKISEISEVKQLIITHISARYR 286
>gi|317049963|ref|YP_004117611.1| ribonuclease Z [Pantoea sp. At-9b]
gi|316951580|gb|ADU71055.1| ribonuclease Z [Pantoea sp. At-9b]
Length = 303
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + +K P TI P I++ ++ + ++
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLKEPLTIYGPQGIRQFIDTALSLSG--SYTSFPLE 115
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGLP-GDE 168
+V + G F D V A+ H+++ GY + + +LK E G+P G
Sbjct: 116 IVEIAAGLVFD-DGDFRVTAWPMNHIVECYGYRIEQHDKPGFLDAPRLKAE--GVPRGPW 172
Query: 169 IKKLKS------------SGTEITYTVTTPE-VAFTGDTMSDFIVDEANIDVLRARILVM 215
++LK +G E T + VA GDT + + D A ++V
Sbjct: 173 YQQLKQGERVRLEDGREINGAEYLGPATKGKVVAIFGDTGPTEVALQLAAD---ADVMVH 229
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T ++ E+A GH+ + E A++ K ++ HFS+R+
Sbjct: 230 ETTL--EAALAEKANSRGHSTTVQTAEVAKQARAKRLIATHFSSRY 273
>gi|448381383|ref|ZP_21561586.1| ribonuclease Z [Haloterrigena thermotolerans DSM 11522]
gi|445663191|gb|ELZ15945.1| ribonuclease Z [Haloterrigena thermotolerans DSM 11522]
Length = 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 42/253 (16%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSVSQLFVTHCHGDHVLGIPGLLQTMAFNDREEPLAIHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY 148
+ ++ L +R +N G + R D + V+AF T H +S GY
Sbjct: 92 HGTRGQIKGLINALGNRPSFPVRINEVGDG-----DVAYRADEYEVRAFGTDHDTRSVGY 146
Query: 149 VVYSVKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VA 189
+ +K + E LG+P G + +L + E+ TV PE +
Sbjct: 147 ALLEDDRKGRFDRERAEELGVPVGPKFSRLHEGESVELEDGTVVDPEQVVGDSRPGRSIV 206
Query: 190 FTGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
+TGDT EA I+V +L+ ++T+ DD ++A + H + E A +
Sbjct: 207 YTGDTRP----TEATIEVADDPDLLIHDATFADDR--ADRAAETAHATARQAAEIANRAG 260
Query: 249 NKAILLIHFSARH 261
+ L+H S+R+
Sbjct: 261 ADRLALLHLSSRY 273
>gi|421697441|ref|ZP_16137004.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
gi|404558202|gb|EKA63486.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
Length = 324
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R K +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP----KEIQQWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E ++ + V+A H + S + +Y S+++KL + LG+P +I
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDIW 176
Query: 171 KLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVMES 217
G + + T + GD ++ +A D A++L+ ES
Sbjct: 177 GHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELLADACKD---AQLLIHES 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|261417831|ref|YP_003251513.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297529499|ref|YP_003670774.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|319767357|ref|YP_004132858.1| ribonuclease Z [Geobacillus sp. Y412MC52]
gi|261374288|gb|ACX77031.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297252751|gb|ADI26197.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|317112223|gb|ADU94715.1| ribonuclease Z [Geobacillus sp. Y412MC52]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P T+ P I+ VE V ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PG-- 166
+V +D G F + V A + H + S G+ V V++ L + + LG+ PG
Sbjct: 117 IVEIDEGVIFDDER-FSVIAKRLDHGMPSYGFRV--VEKDLPGPLLVERLQALGVRPGPI 173
Query: 167 -DEIKKLKS----SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
EIK+ K+ GT I V P+ + D EA I++ R A ++V E+T
Sbjct: 174 YQEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDADVVVHEAT 233
Query: 219 YVDDSTTVEQ--ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ EQ ARDY H+ ++ E A + K ++L H S+R++
Sbjct: 234 F----AAAEQRLARDYFHSTTTDAAEVARRAGAKRLILTHISSRYQ 275
>gi|56756026|gb|AAW26191.1| unknown [Schistosoma japonicum]
Length = 136
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 199 IVDEANI---DVLRARILVMESTYVDD-STTVEQARDYGHTHLSEIVEYAEKFEN-KAIL 253
++ EAN D+L ++L+ME+T++D+ +E AR+ GHTHL EI + A ++ I
Sbjct: 35 VIHEANSICPDLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDEIRQNASLLKSVDYIY 94
Query: 254 LIHFSARHKVDE-IRRAVDAVPAPLAGRV 281
LIHFS R+ ++ IR +P L R+
Sbjct: 95 LIHFSDRYSYNDIIRLCYKDMPDWLVNRI 123
>gi|435850902|ref|YP_007312488.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
gi|433661532|gb|AGB48958.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
Length = 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH+ G+P + T L R +P I P +KE V+ + E+ H E+
Sbjct: 57 IFVTHFHADHMLGIPGLIQTMSFLGRTEPLYIYGPQWVKEFVKIISELGYYKLHFEVE-- 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEY-----LGL-PGDEIK 170
++ + G + R D + A T H + S GY + ++K + E LG+ PG
Sbjct: 115 VIEMAPG-DIIKRNDYSIHAIGTDHSVPSLGYALIEDQRKGRFEREKAIALGVPPGPLFS 173
Query: 171 KLKS------SGTEITYTVTTPEV------AFTGDTMSDFIVDEANIDVLRARILVMEST 218
KL S +G I T +V +TGDT + + D A +L+ +ST
Sbjct: 174 KLHSGVDVEVNGKLIRSTDVVGQVRPGRKIVYTGDTRPCQSILAVSRD---ADVLIHDST 230
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+D + E A++ H+ SE A++ + ++L H S+R+ D
Sbjct: 231 LGNDQS--EWAKESKHSTASEAAILAKEAGVRKLVLTHISSRYTDD 274
>gi|398311328|ref|ZP_10514802.1| ribonuclease Z [Bacillus mojavensis RO-H-1]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPG--- 166
LV ++ E D F V A H +++ GY V S+K L +E PG
Sbjct: 115 LVIQEIEEGAVFEDDQFIVTAASAIHGVEAFGYRVQEKDMPGSLKAALLKEMSIPPGPVY 174
Query: 167 DEIKKLKSSGTEITYTVTTPE----------VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+IKK + E T+ + V F+GDT +SD I + A +LV
Sbjct: 175 SKIKKGEIVTLEDGRTINGEDFLEPPKKGRAVVFSGDTRVSDKIKELAR----DCDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ D V+ A DY H+ + A++ K ++L H SAR++
Sbjct: 231 EATFAKDD--VKLAFDYFHSTTEQAAVTAKEAGAKQLILTHISARYQ 275
>gi|295398003|ref|ZP_06808059.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
gi|294973761|gb|EFG49532.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
Length = 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R + P TI P IK ++ +V R + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSHQGGESPVTIYGPKGIKAYIDNFLQVTR----TTLGYD 114
Query: 117 LVGLDVGEE-FCMRKDLFVKAFKTY-HVIQSQGYVVYSVKQKL-----KQEYLGLPGDEI 169
L+ ++ +E + D + +KT H +QS G+ V Q K G+P +
Sbjct: 115 LIIQELADEGMVFQNDQYQVLYKTLDHAVQSYGFRVIEADQVGELLIDKAREAGVPNGPL 174
Query: 170 KKLKSSGTEITYTVTT---------PE-----VAFTGDTMSDFIVDEANIDVLRARILVM 215
G IT T P+ V GDT + A A LV
Sbjct: 175 LGQLKQGKTITLEDGTQLDGRDFIGPDKKGHIVTILGDTRYN---KNAVALAKDADFLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T+ + AR+Y H+ + + A++ K +LL H SAR+
Sbjct: 232 EATFA--AGEERMARNYYHSTAKQAGQVAKEANVKQLLLTHISARY 275
>gi|227879077|ref|ZP_03996966.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256843066|ref|ZP_05548554.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256850282|ref|ZP_05555711.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|293381292|ref|ZP_06627295.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|312977251|ref|ZP_07788999.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|423318856|ref|ZP_17296733.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|423321567|ref|ZP_17299438.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
gi|227861318|gb|EEJ68948.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256614486|gb|EEU19687.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256712919|gb|EEU27911.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|290922108|gb|EFD99107.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|310895682|gb|EFQ44748.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|405591842|gb|EKB65306.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|405594256|gb|EKB67673.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
Length = 312
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI PS I+E V +V R ++++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSR----TKISYS 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY-----HVIQSQGYVVYSVKQ-------KLKQEYLGL 164
+ +++ + + +D K F+ Y H I S G+ V KL Q Y
Sbjct: 115 IRFVELAKSGLICED---KGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKLAQ-YNVP 170
Query: 165 PGDEIKKLKSSGTEITYTVTT--PEVAFTGDTMSDFIV-----DEANIDVLR----ARIL 213
G + KLK +G ++T T F G T IV + + R A +L
Sbjct: 171 NGPLLGKLK-NGEKVTLADGTVLDGKNFLGPTKPGRIVTVIYDTRSTPSIARLAKDADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ D + A DY H+ E + A K K + L H SAR+
Sbjct: 230 VHESTFAGDEQKL--AHDYYHSTSVEAAKIARKDNVKLLCLNHISARY 275
>gi|420264499|ref|ZP_14767129.1| ribonuclease Z [Enterococcus sp. C1]
gi|394768240|gb|EJF48184.1| ribonuclease Z [Enterococcus sp. C1]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P IK ++ + R+ +++++
Sbjct: 59 IFITHLHGDHIYGLPGLISSRSFQGGDTPLEIYGPKGIKAYIQTVL----RISQTKVSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEY-----LGL-PGDE 168
L ++ EE + KD V + H I S GY + + + + LGL PG
Sbjct: 115 LHFFEIEEEGILFKDQQFEVSCLRLDHGIDSFGYRIVEASHQGELQVQALLELGLKPGPV 174
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLRARILVM 215
+LK G +I + V GDT A + A +LV
Sbjct: 175 FGRLKKGEVVTLDDGRQINGADFLGQAKKGRIVTILGDTRK---CQNAVLLAKDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
EST+ + + AR Y H+ + E A++ K +LL H SAR+ +I V+
Sbjct: 232 ESTFNKEEAKL--ARAYFHSTTRQAAEVAQEAHAKRLLLTHISARYVGKDITNLVN 285
>gi|257053254|ref|YP_003131087.1| ribonuclease Z [Halorhabdus utahensis DSM 12940]
gi|256692017|gb|ACV12354.1| ribonuclease Z [Halorhabdus utahensis DSM 12940]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + +F+SH H DH+ G+P + T R +P I P
Sbjct: 31 LLFDCGEGTQRQMMHFGTGFDVAHIFVSHMHGDHVLGIPGLLQTMDFNEREEPLAIHAPH 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ +E L L T G G+ + V+A +T H QS GY +
Sbjct: 91 GTRSQLEALIGATGDRPSYPLRITQNG--PGDVVLDANEYEVQAIETEHRTQSLGYALVE 148
Query: 153 VKQKLK------QEYLGL-PGDEIKKLKSS-GTEITYTVTTPE-----------VAFTGD 193
+K + + LG+ PG + KL + E PE V +TGD
Sbjct: 149 DDRKGRFDRETAENELGIEPGPKYSKLHAGEAVEHDGRTIQPEEVVGPPRPGRTVVYTGD 208
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T V A+ D A +L+ + T+ DD +AR GH+ E A + K +
Sbjct: 209 TRPVEAVRRASED---ADLLIHDGTFGDDRAA--RARRTGHSTAREAGSLAAEAGAKRLA 263
Query: 254 LIHFSARH 261
L H S R+
Sbjct: 264 LTHISTRY 271
>gi|421664435|ref|ZP_16104575.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
gi|408712732|gb|EKL57915.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
Length = 324
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R K +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP----KEIQQWFEITAQLTDLHLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E ++ + V+A H + S + +Y S+++KL + LG+P +I
Sbjct: 117 FIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDIW 176
Query: 171 KLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVMES 217
G + + T + GD ++ +A D A++L+ ES
Sbjct: 177 GHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELLADACKD---AQLLIHES 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|389840199|ref|YP_006342283.1| ribonuclease Z [Cronobacter sakazakii ES15]
gi|387850675|gb|AFJ98772.1| ribonuclease Z [Cronobacter sakazakii ES15]
Length = 304
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 44/239 (18%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+FI+H H DHI GLP + +R + + P I P I E VE + LN H
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 116 TLVG---LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP 165
+ LD GE L V A+ H ++ GY + + +LK + +P
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 166 GDEIKKLKSSGTEITYT----------VTTP----EVAFTGDT--MSDFIVDEANIDVLR 209
G ++LK G +T ++ P ++A GDT + ++DV+
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVDVM- 228
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T ++ E+A GH+ + E A K +L+ HFS+R+ ++ +R
Sbjct: 229 ----VHETTL--EAAMAEKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSTEDCQR 281
>gi|445448066|ref|ZP_21443871.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
gi|444758249|gb|ELW82750.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
Length = 324
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQ 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E ++ + V+A H + S + +Y S+++KL + LG+P GD
Sbjct: 117 FIDVNEATQPQQIIDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPKGDMW 176
Query: 170 KKLK------------SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
LK S I GD ++ +A D A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKAGQQAI 285
>gi|226484716|emb|CAX74267.1| Nuclear ribonuclease Z [Schistosoma japonicum]
Length = 125
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 20 YKVEGLSIAGHETCIIFPSLD--LAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVAT 77
+++ G S+AG+ETC+ FDIG P + +++FISH H DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 78 RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDH---SELNHTLVGLDVGEEF 126
R L ++ T +P + V+ + + M S+ T + ++ G F
Sbjct: 69 RALNGLRGATYFMPKHLVPHVKAVCDSFTAMAEKHDSDFVGTFIPVEPGNRF 120
>gi|408383254|ref|ZP_11180791.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
gi|407814036|gb|EKF84674.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
Length = 302
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 46/261 (17%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYV---ATRGLYRMKPPTII 89
+ FD G R +++ + +FI+H H DH GLP + A RG R +P I
Sbjct: 31 MLFDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRG--RTEPLHIY 88
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY 148
P I + VE + + + + L+ + +V E ++ D + ++ T+H + +
Sbjct: 89 GPEGIIKTVESI----KNLGYYALSFPIHAYEVTEGTVLQTDEYLIECCPTHHSVLN--- 141
Query: 149 VVYSVKQKLKQEY-------LGL-PGDEIKKL-KSSGTEITYTVTTPE-----------V 188
+ YSV++K ++ LGL PG + KL K E+ T+ P+ V
Sbjct: 142 LAYSVEEKRSPKFLREKAIQLGLKPGPDFGKLQKGIPVEVDGTMIKPDQVLGEKRKGRKV 201
Query: 189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
++GDT E A +L+ ESTY +S +A + GH+ + A++ E
Sbjct: 202 VYSGDTKP---CPEMVQFASGADVLIHESTY--ESAQESKAIENGHSTTTHAAMIAKEAE 256
Query: 249 NKAILLIHFSARHKVDEIRRA 269
++L H S R++ + RA
Sbjct: 257 VSELILTHISTRYRDSDKLRA 277
>gi|194017036|ref|ZP_03055649.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
gi|194011642|gb|EDW21211.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 37/253 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVSAALSATQ----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYL---GL-PGDEI 169
L +++ E D F V+A + H I + GY V V LK E L G+ PG
Sbjct: 115 LHIIEIDEGIVFEDDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLY 174
Query: 170 KKLKSSGT---------EITYTVTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+KLK+ T + T + P+ VAF+GDT + + I A A +LV
Sbjct: 175 QKLKNGETVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAK----DADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE-----IRRAV 270
E+T+ + + A +Y H+ + + A++ K ++L H SAR++ +E ++ A
Sbjct: 231 EATFGKEDADL--AYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALKQLLKEAR 288
Query: 271 DAVPAPLAGRVFA 283
D P A + F+
Sbjct: 289 DIFPLTEAAQDFS 301
>gi|354582803|ref|ZP_09001704.1| ribonuclease Z [Paenibacillus lactis 154]
gi|353199095|gb|EHB64561.1| ribonuclease Z [Paenibacillus lactis 154]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP +++RG + P TI P IK +E + S + +T
Sbjct: 59 VFITHMHGDHVFGLPGLLSSRGAQGVTAPLTIYGPPGIKSFIETSLSI----SQSRVPYT 114
Query: 117 LVGLD-VGEEFCMRKDLFVKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
+ ++ G K V+A H S GY V S+ K + Y PG +
Sbjct: 115 MEIIEHTGGIIFEDKYFRVEAAGLDHRADSYGYRVVEKDLPGSLDPKRLEAYGLKPGPQY 174
Query: 170 KKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
KLK G I + P+ V GDT V+ D A ILV E
Sbjct: 175 GKLKRGESVELGDGRWIHPADVLLAPKKGRVVTILGDTRPCPGVEVLAKD---ADILVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+++D E A +Y H+ + E A + K++ L HFS+R+K
Sbjct: 232 ATFMED--LAELAHEYYHSTAKQAAEAAVRAGVKSLFLTHFSSRYK 275
>gi|384176001|ref|YP_005557386.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595225|gb|AEP91412.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAVQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D +LV
Sbjct: 175 QKIK-KGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|431799027|ref|YP_007225931.1| ribonuclease Z [Echinicola vietnamensis DSM 17526]
gi|430789792|gb|AGA79921.1| ribonuclease Z [Echinicola vietnamensis DSM 17526]
Length = 303
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 31/259 (11%)
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMD 109
R+ + +FISH H DH GL ++T L + K P TI P ++++ +
Sbjct: 51 RSFKIDHIFISHLHGDHYLGLMGVISTFHLNKRKTPLTIYGP----RGLDEIITTQLKYG 106
Query: 110 HSELNHTL----VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLK 158
+++LN+ L D + K V +F H + G++V + +K+KL
Sbjct: 107 NTKLNYPLHFVRTDPDQKQLLVDAKKFMVYSFPLKHRLPCTGFLVVEKPGLRHIIKEKLL 166
Query: 159 QEYLGLPGDEIKK-----LKSSGTEITYTVTT--PEVAFTGDTMSDFIVDEANIDVLRA- 210
++ L +P + K + G T T P+ SD I DE + L+
Sbjct: 167 EQPLSIPAINVLKHGKDYMDKDGNVFTVEEFTRPPDPIRKYAFCSDTIFDEELVPYLKGV 226
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH-----KVDE 265
+L EST+++ E+A + H S+ A+K + K +LL H+S R+ +E
Sbjct: 227 DLLYHESTFME--AECERAAETYHCTASQAATIAQKADVKQLLLGHYSTRYVELEPLWEE 284
Query: 266 IRRAVDAVPAPLAGRVFAL 284
+R D G ++L
Sbjct: 285 AKRVFDRCQLSTEGETYSL 303
>gi|336234790|ref|YP_004587406.1| ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
gi|335361645|gb|AEH47325.1| Ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
Length = 348
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P I+ +E V + L +
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQTFIETSLSV----SSTRLKYD 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PGD 167
L +++ E + F V A + H I S G+ V V++ L K + LG+ PG
Sbjct: 116 LQIVEIEEGIIFEDERFLVTAKQLDHGILSYGFRV--VEKDLPGTLLVDKLQALGIRPGP 173
Query: 168 EIKKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDV-LRARIL 213
+++K GT I + V P+ VA GDT EA++++ A +L
Sbjct: 174 IYQQIKLGKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR----YCEASVELAAEADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
V E+T+ + + + A DY H+ ++ E A++ K ++L H S+R++
Sbjct: 230 VHEATFAREDSAL--AHDYFHSTTAQAAEVAKRARAKKLILTHISSRYQ 276
>gi|239502887|ref|ZP_04662197.1| Ribonuclease Z [Acinetobacter baumannii AB900]
gi|421676934|ref|ZP_16116829.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
gi|410393891|gb|EKP46242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 110/234 (47%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLVVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ + + +V GD ++ A A++L+ E+
Sbjct: 177 GHLKRGYDVEFEGRILKSQDFIKIQNQQVHAIIGGDNDRPELLANA---CKNAQLLIHEA 233
Query: 218 TYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 234 TYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|433589461|ref|YP_007278957.1| ribonuclease Z [Natrinema pellirubrum DSM 15624]
gi|448335601|ref|ZP_21524742.1| ribonuclease Z [Natrinema pellirubrum DSM 15624]
gi|433304241|gb|AGB30053.1| ribonuclease Z [Natrinema pellirubrum DSM 15624]
gi|445616579|gb|ELY70200.1| ribonuclease Z [Natrinema pellirubrum DSM 15624]
Length = 314
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 42/253 (16%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSVSQLFVTHCHGDHVLGIPGLLQTMAFNDRDEPLAIHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY 148
+ ++ L +R +N G + R D + V+AF T H +S GY
Sbjct: 92 HGTRGQIKGLINALGNRPSFPVRINEVGDG-----DVAYRADEYEVRAFGTDHDTRSVGY 146
Query: 149 VVYSVKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VA 189
+ +K + E LG+P G + +L + E+ TV PE +
Sbjct: 147 ALLEDDRKGRFDRERAEELGVPVGPKFSRLHEGESVELEDGTVVDPEQVVGDSRPGRSIV 206
Query: 190 FTGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
+TGDT EA I+V +L+ ++T+ DD ++A + H + E A +
Sbjct: 207 YTGDTRP----TEATIEVADDPDLLIHDATFADDR--ADRAAETAHATARQAAEIANRAG 260
Query: 249 NKAILLIHFSARH 261
+ L+H S+R+
Sbjct: 261 ADRLALLHLSSRY 273
>gi|229163080|ref|ZP_04291036.1| Ribonuclease Z [Bacillus cereus R309803]
gi|228620486|gb|EEK77356.1| Ribonuclease Z [Bacillus cereus R309803]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 30/248 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGY--VVYSVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D +V+ + H I+ GY V ++ L K LG+ PG
Sbjct: 115 LEVVEIEEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLELGVKPGPI 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTMLNGKDFIGPPQKGKIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLA 278
+ + +QA DY H+ + A + K ++L H S+R++ D ++ ++ A
Sbjct: 235 FAAEDE--QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQGDTYKKLLEE-----A 287
Query: 279 GRVFALTE 286
VF+ TE
Sbjct: 288 REVFSNTE 295
>gi|448597745|ref|ZP_21654670.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
gi|445739206|gb|ELZ90715.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
Length = 315
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDDSLAIHGPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +EQL VH + ++ + G D V+AF T H S GY +
Sbjct: 91 GSKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 148
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 149 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 208
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 209 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARVARDADVRRF 262
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 263 ALTHISARYAAD---------PSPL 278
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 44/177 (24%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT---RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHS- 111
+ + ISH H+DH G LP +V T GL M PT + ED +++FE +M+
Sbjct: 59 DIIVISHFHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPL 118
Query: 112 ----ELNHTL---VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
++N+ L + L++ E + + ++ ++ + HVI + + V YL
Sbjct: 119 YTTEQINNCLSKVIALNMEETYEIEQEFIIRPYYAGHVIGAAMFFV---------RYL-- 167
Query: 165 PGDEIKKLKSSGTEITYTVTTPEVAFTGD--TMSDFIVDEANIDVLRARILVMESTY 219
DE V +TGD T+ D + A ID L +L+ ESTY
Sbjct: 168 --DE------------------TVVYTGDFSTIPDRYLRAATIDCLYPDLLITESTY 204
>gi|16079441|ref|NP_390265.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|221310303|ref|ZP_03592150.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|221314627|ref|ZP_03596432.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319550|ref|ZP_03600844.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323826|ref|ZP_03605120.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SMY]
gi|321311863|ref|YP_004204150.1| ribonuclease Z [Bacillus subtilis BSn5]
gi|402776646|ref|YP_006630590.1| ribonuclease Z [Bacillus subtilis QB928]
gi|428279864|ref|YP_005561599.1| ribonuclease Z [Bacillus subtilis subsp. natto BEST195]
gi|430759151|ref|YP_007209075.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449094881|ref|YP_007427372.1| ribonuclease Z [Bacillus subtilis XF-1]
gi|452915423|ref|ZP_21964049.1| ribonuclease Z [Bacillus subtilis MB73/2]
gi|1731073|sp|P54548.1|RNZ_BACSU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|1303962|dbj|BAA12617.1| YqjK [Bacillus subtilis]
gi|2634819|emb|CAB14316.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|291484821|dbj|BAI85896.1| ribonuclease Z [Bacillus subtilis subsp. natto BEST195]
gi|320018137|gb|ADV93123.1| ribonuclease Z [Bacillus subtilis BSn5]
gi|402481826|gb|AFQ58335.1| Ribonuclease Z [Bacillus subtilis QB928]
gi|407959629|dbj|BAM52869.1| ribonuclease Z [Bacillus subtilis BEST7613]
gi|407965204|dbj|BAM58443.1| ribonuclease Z [Bacillus subtilis BEST7003]
gi|430023671|gb|AGA24277.1| Ribonuclease Z [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449028796|gb|AGE64035.1| ribonuclease Z [Bacillus subtilis XF-1]
gi|452115771|gb|EME06167.1| ribonuclease Z [Bacillus subtilis MB73/2]
Length = 307
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D +LV
Sbjct: 175 QKIK-KGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|327400955|ref|YP_004341794.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
gi|327316463|gb|AEA47079.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
Length = 303
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 43/252 (17%)
Query: 43 FDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCI 94
FD G R + + +FI+H H DH GL + T L R + I P+
Sbjct: 35 FDCGEGTQRQMMIAKTGFKLDAIFITHLHTDHFIGLFGLLETMSLNERREKLAIYSPNA- 93
Query: 95 KEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY 151
L + + + EL++ + V L G+E ++ D F V AFKT H++ S GY +
Sbjct: 94 ----RFLASLFKAFGYDELSYPIEVVELRDGDE--VKFDGFKVVAFKTDHIVPSLGYALI 147
Query: 152 SVKQ-----KLKQEYLGLPGDEI--KKLKSSGTEITYTVTTPE-----------VAFTGD 193
+ + K E LG+P + K +K + V TPE + +TGD
Sbjct: 148 EKDRPGKFYREKAEALGIPPGPLYAKLVKGESVVVGGKVITPEMVVGKPRPGRKIVYTGD 207
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T E I++ R A +L+ ++ + D E A + H+ E E A+ K +
Sbjct: 208 TRPC----ERTIEIARSADVLIHDAAFTSDLQ--EWAEETKHSTAREAAEVAKAAGVKKL 261
Query: 253 LLIHFSARHKVD 264
+L H SAR+ D
Sbjct: 262 VLTHVSARYSKD 273
>gi|433417601|ref|ZP_20404793.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|448573598|ref|ZP_21641081.1| ribonuclease Z [Haloferax lucentense DSM 14919]
gi|432199965|gb|ELK56089.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|445718504|gb|ELZ70194.1| ribonuclease Z [Haloferax lucentense DSM 14919]
Length = 317
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDDSLAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +EQL VH + ++ + G D V+AF T H S GY +
Sbjct: 93 GSKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 151 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARVARDADVRRF 264
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 265 ALTHISARYAAD---------PSPL 280
>gi|152976548|ref|YP_001376065.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
gi|189043779|sp|A7GSG2.1|RNZ_BACCN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|152025300|gb|ABS23070.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 40/246 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P I EQ EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGI----EQFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
L +++ EE + +D +V+ + H I+ GY + + +KL++ + PG
Sbjct: 115 LEIVEITEEGIVFEDKQFYVETKRLSHGIECFGYRIVEKDIQGPLLVEKLREANVK-PGP 173
Query: 168 EIKKLKSSGTEITYT-----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARI 212
K+LK EI + P+ + GDT D + I A +
Sbjct: 174 IFKRLKDG--EIVELEDGRVLDGKDFIGPPQKGRIITILGDTR---YCDASRILAQDADV 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRRA 269
LV E+T+ T QA DY H+ + A + K ++L H S+R++ D E+ R
Sbjct: 229 LVHEATFAAADQT--QAHDYFHSTTEQAARIALEANVKRLILTHISSRYQGDMYKELLRE 286
Query: 270 VDAVPA 275
AV A
Sbjct: 287 AKAVFA 292
>gi|159906130|ref|YP_001549792.1| ribonuclease Z [Methanococcus maripaludis C6]
gi|254808648|sp|A9AB37.1|RNZ_METM6 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|159887623|gb|ABX02560.1| ribonuclease Z [Methanococcus maripaludis C6]
Length = 308
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 43 FDIGRCPSR--------ALSQNFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G R + N +FISH H DHI GLP VA +G R KP I P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGLPGLLQSVAFQG--RTKPLNIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ +E + V +N + E+ + V +F H + + YV
Sbjct: 91 EETAKMLENILNVGYHSIDYPINVYEISSKTPEKIISTDNYEVYSFPVVHSVPALAYVFR 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKS------SGTEITY-TVTTPE-----VAFTGDT 194
VK+ K LG+ G ++K+LK +G IT VT P V ++GDT
Sbjct: 151 QVKKPRMDLEKVNKLGIEIGPDLKRLKDGFSVELNGKIITLEDVTLPPKKGICVGYSGDT 210
Query: 195 M-----SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+ ++F+ + L+ L+ E+T+ D T + A++ H+ + + + A+
Sbjct: 211 IPLNEFAEFLRE------LKCTTLIHEATF--DKTMDKNAKETLHSTVHDALNIAKLSGV 262
Query: 250 KAILLIHFSARH 261
++L H SAR+
Sbjct: 263 NTVILTHISARY 274
>gi|124486183|ref|YP_001030799.1| hypothetical protein Mlab_1365 [Methanocorpusculum labreanum Z]
gi|124363724|gb|ABN07532.1| ribonuclease Z [Methanocorpusculum labreanum Z]
Length = 312
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 44/266 (16%)
Query: 30 HETCIIF--PSLDLAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGL 80
+ +CI+ S L FD G + + + N +FI+H H DH G+ + T
Sbjct: 23 NPSCIMIRRGSDTLLFDCGEGAQQQMMRLKTGFTVNAVFITHWHADHYLGIFGLIETMAF 82
Query: 81 Y-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE-EFCMRKDLFVKAFK 138
R +P T+ P I V + ++ + + TL ++V + + M V AF+
Sbjct: 83 NGRTEPLTLYGPRGIDWFVNIIHQLTPK-----IPFTLSAIEVSDGDVIMFDGYSVVAFR 137
Query: 139 TYHVIQSQGYVVYSVKQKLKQEYLGL------PGDEIKKLKSSGTEITY------TVTTP 186
T+H ++S GYV+ + + + G PG KL+ G+ +T TP
Sbjct: 138 TFHGMESIGYVLEEDMRPGRFDREGAISLGVKPGPMFGKLQR-GSPVTILRGDEEVTITP 196
Query: 187 E-----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
E V +TGDT + ++ + + A +L+ E+T+ D+ E+A++ H+
Sbjct: 197 EMVMGERRRGRKVVYTGDTRP--VKNQPEL-LANADLLIHEATF-DEEEGSERAKEAWHS 252
Query: 236 HLSEIVEYAEKFENKAILLIHFSARH 261
E + A + K + L+HFS+R+
Sbjct: 253 TACEAGQVAALVKPKILALVHFSSRY 278
>gi|330718653|ref|ZP_08313253.1| beta-lactamase superfamily hydrolase [Leuconostoc fallax KCTC 3537]
Length = 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G R +P TI P +++ V+ R+ + L
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGANRNEPLTIYGPKGVQDFVKTAL----RVSETRLT 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDE 168
+ + ++ D F V+A H I++ GY V Q K + +P
Sbjct: 115 YPVHYVETTSGIIFDDDTFTVEALPLKHRIETWGYRVTEKDHPGELQVDKLQAAHIPAGP 174
Query: 169 IKKLKSSGTEITYTVTTPE------VAFTGDTMSD----FIVD-EANIDVLR----ARIL 213
I +G + VT P+ F G FI+D N + L+ A +L
Sbjct: 175 IYGQLKAGKQ----VTLPDGRIINGQDFIGQAQKGRIITFILDTRPNDNSLQLAHNADVL 230
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV--- 270
V ESTY + A+ +GH+ + A + +LL H SAR+ ++ + +
Sbjct: 231 VHESTYGSSPEENKMAKAHGHSTSLNAAKTAIQSHVGTLLLTHLSARYIGPQVNQLIHDV 290
Query: 271 -DAVPAPLAGRVFALTE 286
D P R F + E
Sbjct: 291 RDVFPNTRVVRDFDIIE 307
>gi|169632990|ref|YP_001706726.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii SDF]
gi|169151782|emb|CAP00601.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii]
Length = 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVG 119
I+H H DH GL +A+ G+ P I++ ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP---KEIQQWFEITAQLTDLHLPYSIKF 117
Query: 120 LDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIKK 171
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 118 IDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDIWG 177
Query: 172 LKSSGTEITY-----------TVTTPEV--AFTGDTMSDFIVDEANIDVLRARILVMEST 218
G ++ + + ++ GD ++ +A D A++L+ E+T
Sbjct: 178 HLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKD---AQLLIHEAT 234
Query: 219 YVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
Y+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 235 YL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|424044605|ref|ZP_17782213.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-03]
gi|408887784|gb|EKM26284.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-03]
Length = 281
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 36/235 (15%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRM 108
LS N+L I+H H DH GLP +A+ G+ K P TII P E ++Q FE +
Sbjct: 6 LSLNYLRVICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP----EGIKQWFEATQAF 61
Query: 109 DHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV-------VYSVKQKLKQE 160
L L ++ + + F + A H + S Y +Y KL+Q
Sbjct: 62 TKLYLPFELHFIEAEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQ- 120
Query: 161 YLGLPGDEIKKLKSSGTEITYT-VTTPEVAFT------------GDTMSDFIVDEANIDV 207
L +P I G ++ Y T AFT GD + +D +
Sbjct: 121 -LNIPRGPIWGELVRGNDVEYQGQTLMSNAFTKLAHPPRKAIICGDNDTPEKLDSL---I 176
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV ESTY + E+A + GH + S++ YA+ + +++L HFS R++
Sbjct: 177 EGAHLLVHESTYSE--AMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQ 229
>gi|288932766|ref|YP_003436826.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
gi|288895014|gb|ADC66551.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
Length = 302
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 41/250 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
+ FD G R + + +FI+H H DH G+ + T L R KP +I P+
Sbjct: 33 ILFDCGEGTQRQMMKAKTGFNIEAIFITHLHTDHFIGVFGLLETMSLNSREKPLSIYTPN 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV 150
+ L ++ R + L + VGL G+ F ++ V AFKT H+++S GY
Sbjct: 93 S-----KFLRKLFREFGYHNLGFPVRVVGLRDGD-FVRFENFKVLAFKTDHIVESLGYAF 146
Query: 151 YSVKQK-----LKQEYLGLPGDEIKKLKSSGTEITY--TVTTPE-----------VAFTG 192
+++ K LG+P + + G I + + TP+ V +TG
Sbjct: 147 VEDERRGKFNVEKARELGIPPGPLYSKLARGEAIEFGEKIITPDMVLGEKRPGWKVVYTG 206
Query: 193 DTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT + +V+ A A +L+ ++ + S + A++ H+ + E A+K K
Sbjct: 207 DTAPVEKLVEIAK----NADLLIHDAAFT--SELDDWAKETKHSTARDAAEIAKKANVKK 260
Query: 252 ILLIHFSARH 261
++L H SAR+
Sbjct: 261 LVLTHISARY 270
>gi|184158791|ref|YP_001847130.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ACICU]
gi|332875160|ref|ZP_08442993.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|384131176|ref|YP_005513788.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|384143909|ref|YP_005526619.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385238206|ref|YP_005799545.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|387123277|ref|YP_006289159.1| beta-lactamase superfamily metal-dependent hydrolase [Acinetobacter
baumannii MDR-TJ]
gi|407933414|ref|YP_006849057.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|416147360|ref|ZP_11601738.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|417569408|ref|ZP_12220266.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|417578400|ref|ZP_12229237.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|417869102|ref|ZP_12514097.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|417874066|ref|ZP_12518925.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|417879371|ref|ZP_12523943.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|417882430|ref|ZP_12526727.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|421203958|ref|ZP_15661089.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|421534622|ref|ZP_15980894.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|421628332|ref|ZP_16069115.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|421686166|ref|ZP_16125921.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|421703957|ref|ZP_16143407.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|421707911|ref|ZP_16147292.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|421794352|ref|ZP_16230453.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|424051704|ref|ZP_17789236.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|424063254|ref|ZP_17800739.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|425753369|ref|ZP_18871253.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|445473903|ref|ZP_21453015.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|445477372|ref|ZP_21454288.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
gi|183210385|gb|ACC57783.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ACICU]
gi|322507396|gb|ADX02850.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|323518706|gb|ADX93087.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|332736604|gb|EGJ67598.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|333365591|gb|EGK47605.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|342228829|gb|EGT93706.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|342229820|gb|EGT94670.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|342231509|gb|EGT96318.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|342237791|gb|EGU02244.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|347594402|gb|AEP07123.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385877769|gb|AFI94864.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Acinetobacter baumannii MDR-TJ]
gi|395553631|gb|EJG19637.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|395569097|gb|EJG29767.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|398326499|gb|EJN42646.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|404568768|gb|EKA73863.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|404665260|gb|EKB33223.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|404674822|gb|EKB42558.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|407191004|gb|EKE62215.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|407191126|gb|EKE62336.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|407901995|gb|AFU38826.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|408707439|gb|EKL52723.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|409987512|gb|EKO43693.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|410394499|gb|EKP46827.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|425497981|gb|EKU64070.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|444768615|gb|ELW92826.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|444776450|gb|ELX00492.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
Length = 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 46/241 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEI 169
+DV E + +LF++A H + S + +Y S ++K+ + LG+P GD
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTM--SDFI-VDEANIDVL----------------RA 210
LK +V F G + DFI + + I + A
Sbjct: 177 GHLKRG----------YDVEFEGRILKSQDFIKIQKQQIHAIIGGDNDRPELLADTCKDA 226
Query: 211 RILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRA 269
++L+ E+TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A
Sbjct: 227 QLLIHEATYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQA 284
Query: 270 V 270
+
Sbjct: 285 I 285
>gi|339497678|ref|ZP_08658654.1| beta-lactamase superfamily hydrolase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 318
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P IK+ V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGPKGIKDFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ + + + E F V A H I++ G+ V + KL+ E + G
Sbjct: 115 YPINYVALQEGVIFDDPTFQVIAAPMRHRIETWGFRVVEKDHPGELLVDKLRAENIP-SG 173
Query: 167 DEIKKLKSSGTEITYTVTTPE------VAFTGDTMSDFIV-------DEANIDVL--RAR 211
+LK+ TVT P+ + + G+T +V NI +L A
Sbjct: 174 PLYGRLKAG-----KTVTLPDGRTINGLDYIGETQKGRVVTLILDTRPNDNIALLAHHAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV ESTY + AR + H+ A K + ++L H SAR+
Sbjct: 229 VLVHESTYGASDEESKMARAHAHSTSINAANVARKAQVGKLVLTHLSARY 278
>gi|443631671|ref|ZP_21115851.1| ribonuclease Z [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347786|gb|ELS61843.1| ribonuclease Z [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 307
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 34/250 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
LV ++ E D F V A H +++ GY V S+K L +E PG
Sbjct: 115 LVIKEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADLLKEMNIPPGPVY 174
Query: 170 KKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+K+K T E + + V F+GDT + E D +LV E
Sbjct: 175 QKIKKGETVKLEDGRIINGNDFLEPPKKGRAVVFSGDTRVSDKLKELARD---CDVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVDA 272
+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ A D
Sbjct: 232 ATFAKEDRKL--AYDYFHSTTEQAAVTAKEAGAKQLILTHISARYQGDASLELQKEAADV 289
Query: 273 VPAPLAGRVF 282
P +A F
Sbjct: 290 FPNSVAAYDF 299
>gi|365876751|ref|ZP_09416270.1| ribonuclease Z [Elizabethkingia anophelis Ag1]
gi|442587049|ref|ZP_21005870.1| ribonuclease Z [Elizabethkingia anophelis R26]
gi|365755749|gb|EHM97669.1| ribonuclease Z [Elizabethkingia anophelis Ag1]
gi|442563282|gb|ELR80496.1| ribonuclease Z [Elizabethkingia anophelis R26]
Length = 304
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 109/257 (42%), Gaps = 48/257 (18%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEV---HRRMDHS 111
N +FISH H DH GLP +A+ R L R + + P IK+ +E +FE+ HR
Sbjct: 56 NHIFISHLHGDHCFGLPGLIASFRLLGRDQELHVYGPKGIKKMLETIFEITETHRGF--Q 113
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------P 165
+ H L G D ++ L V YH I GY+ ++K K L + P
Sbjct: 114 IVYHELEG-DQSQKVYEDDKLEVWTIPLYHRIYCNGYL---FREKPKDRRLNMAEISKYP 169
Query: 166 GDEI---KKLK-------SSG----TEITYTVTTPEV--AFTGDT--MSDFIVDEANIDV 207
EI LK S G E+ T P V AF DT D I N+DV
Sbjct: 170 EIEICDYHNLKRGKDFVLSDGYVLKNEVLTTDPEPPVSYAFCSDTRFKEDIIPIIENVDV 229
Query: 208 LRARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARHK---- 262
L EST++ D +++ DY GHT E A++ K ++L HFS R+
Sbjct: 230 -----LYHESTFLHD---LKEMADYTGHTTAKEAAIIAQRAGVKKLILGHFSNRYADLTV 281
Query: 263 -VDEIRRAVDAVPAPLA 278
DE R P+A
Sbjct: 282 FTDEAREYFPNTFLPIA 298
>gi|282165506|ref|YP_003357891.1| ribonuclease Z [Methanocella paludicola SANAE]
gi|282157820|dbj|BAI62908.1| ribonuclease Z [Methanocella paludicola SANAE]
Length = 304
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 33/239 (13%)
Query: 48 CPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEV-H 105
C S + +F++H H DH G+P + T G R +P I P ++E + L + +
Sbjct: 47 CRSGFMDVGSIFLTHFHADHTLGIPGLIQTMGFQGRTEPLHIYGPKFVREYCDILNSLGY 106
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQE 160
+ + H L DV E R V+AF+T+H + GY + + + +
Sbjct: 107 LKPAFDVVAHELRHGDVVE----RNGYKVEAFRTFHSVPGLGYALMEDARLGRFDRQRAL 162
Query: 161 YLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGDTMSDFIVDEANID 206
LG+P G+++ ++K S + + V P + +TGDT +A +
Sbjct: 163 ELGVPEGPLFGRLHRGEDV-EVKGSIIKSSDVVGEPRPGRRIVYTGDTAP----SQAFLP 217
Query: 207 VLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
VL+ A + + E+T+ D+++ ++A + H+ ++ A + ++L H S+R+ D
Sbjct: 218 VLKGADLWISEATFADEAS--DKAAETLHSSSGDVARLAATAGVQRLILTHISSRYSED 274
>gi|312110329|ref|YP_003988645.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
gi|311215430|gb|ADP74034.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
Length = 309
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P I+ +E V + L +
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQAFIETSLSV----SSTRLKYD 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PGD 167
L +++ E + F V A + H I S G+ V V++ L K + LG+ PG
Sbjct: 116 LQIVEIEEGIIFEDERFLVTAKQLDHGILSYGFRV--VEKDLPGTLLVDKLQALGIRPGP 173
Query: 168 EIKKLK-------SSGTEI--TYTVTTPE----VAFTGDTMSDFIVDEANIDV-LRARIL 213
+++K GT I + V P+ VA GDT EA++++ A +L
Sbjct: 174 IYQQIKLGKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR----YCEASVELAAEADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
V E+T+ + + + A DY H+ ++ E A++ K ++L H S+R++
Sbjct: 230 VHEATFAREDSAL--AHDYFHSTTAQAAEVAKRARAKKLILTHISSRYQ 276
>gi|399576124|ref|ZP_10769881.1| rnase z [Halogranum salarium B-1]
gi|399238835|gb|EJN59762.1| rnase z [Halogranum salarium B-1]
Length = 310
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 45/257 (17%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
+ FD G R + + + LF++H H DHI G+P + + R I VP
Sbjct: 33 MLFDCGEGTQRQMMRFNTGFNVSHLFVTHLHGDHILGIPGLIQSWDFNDRDAALAIHVPP 92
Query: 93 CIKEDVEQL-----FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQG 147
K+ +++L ++ ++ E++ LD GEEF V+ FKT H +SQG
Sbjct: 93 GSKKHIKRLVHAGGYDPSYPVNIHEVSPGSTALD-GEEFE------VRTFKTNHRTRSQG 145
Query: 148 YVVYS------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT---VTTPE----------- 187
Y + ++ +E LG+P + +G + V PE
Sbjct: 146 YAIVEDDRPGRFDREKAEEELGIPPGPMYGRLHNGEAVELDDGRVIQPEQVVGDPRPGRK 205
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
+ +TGDT E D A +L+ ++T+ D + +AR H+ E + A +
Sbjct: 206 LVYTGDTRPVQATVEMAED---ADLLIHDATFASDESG--RARQTYHSTAREAADVASRA 260
Query: 248 ENKAILLIHFSARHKVD 264
K + L H S+R+ D
Sbjct: 261 NVKRLALTHISSRYAGD 277
>gi|429122151|ref|ZP_19182750.1| Ribonuclease Z [Cronobacter sakazakii 680]
gi|426323359|emb|CCK13487.1| Ribonuclease Z [Cronobacter sakazakii 680]
Length = 304
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP + +R + + P I + + + + E R+ S ++ L
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGT---KGIAEFVETTLRLSGSWTSYPL 115
Query: 118 VGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDEI 169
++ E + +L V A+ H ++ GY + + +LK + +PG
Sbjct: 116 NVHEITEGQLLDDGELTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MPGPLF 174
Query: 170 KKLKSSGTEITYT----------VTTP----EVAFTGDT--MSDFIVDEANIDVLRARIL 213
++LK G +T ++ P ++A GDT + ++DV+
Sbjct: 175 QQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVDVM----- 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T ++ E+A GH+ + E A K +L+ HFS+R+ +E +R
Sbjct: 229 VHETTL--EAAMAEKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQR 281
>gi|315231971|ref|YP_004072407.1| ribonuclease Z [Thermococcus barophilus MP]
gi|315184999|gb|ADT85184.1| ribonuclease Z [Thermococcus barophilus MP]
Length = 307
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 56/261 (21%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ +D+G R L+ L FI+H H DH GL + T L+ R KP I P
Sbjct: 32 ILWDVGEGTLRQLNTAKLSPMRIEKIFITHFHGDHYLGLMSLIQTMTLWNREKPLHIYGP 91
Query: 92 SCIKEDVEQL---------FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
E ++ FE+H ++GE D + +FK H
Sbjct: 92 KYTFEFIQNYLKSGFFAPSFEIHVH-------------ELGEARLKFGDYEIWSFKVEHG 138
Query: 143 IQSQGYVVYSVKQK-----LKQEYLGL-PGDEIK------KLKSSGTEITYTVTTPE--- 187
I + GYV ++ K LGL PG +K K++ +G I T E
Sbjct: 139 IPALGYVFKEKDKRGNFNLEKIRELGLKPGPWMKELELKGKIEINGRTIYLEDVTGERRR 198
Query: 188 ---VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
V +TGDT + RA +L+ E+TY+ T E+ Y H+ +SE E A
Sbjct: 199 GVKVVYTGDTEP---CKRIELFSERADLLIYEATYL---TGEERGESY-HSTVSEACEVA 251
Query: 245 EKFENKAILLIHFSARHKVDE 265
+K + K + L H + R+K DE
Sbjct: 252 KKAKVKLLALFHRAPRYKYDE 272
>gi|448302328|ref|ZP_21492310.1| ribonuclease Z [Natronorubrum tibetense GA33]
gi|445581557|gb|ELY35909.1| ribonuclease Z [Natronorubrum tibetense GA33]
Length = 308
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R L S + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDAGEGTQRQLMRFGTGFSISHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHAPH 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY 151
+ ++ L + VG D + R D + V+ F+T H +S GY +
Sbjct: 93 GTRRQLKSLVNALGNRPSFPVRINEVGDD---DVAYRADEYEVRVFETDHDARSVGYALV 149
Query: 152 SVKQK-----LKQEYLGLP-GDEIKKLKSS-------GTEI--TYTVTTPE----VAFTG 192
+K + E LG+P G + KL + GT + V P + +TG
Sbjct: 150 EDDRKGRFDRERAEELGVPVGPKFSKLHAGESVELEDGTAVDPDQVVGEPRPGRSIVYTG 209
Query: 193 DTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
DT A I+V +L+ ++T+ DD ++A H+ + E A +
Sbjct: 210 DTRP----TTATIEVADEPDLLIHDATFADDR--ADRAAKTAHSTARQAAEIANRAGADR 263
Query: 252 ILLIHFSARH 261
+ L+H S+R+
Sbjct: 264 LALVHLSSRY 273
>gi|315303944|ref|ZP_07874400.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
gi|313627682|gb|EFR96359.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
Length = 306
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 38/230 (16%)
Query: 57 FLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
F+FI+H H DHI GLP +++R TI P ++E + E R+ + L +
Sbjct: 58 FIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGVQEYI----ETSLRLSGTRLTY 113
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ------KLKQEYLGLPGD 167
++ ++ ++F + A + H +QS GY +V KQ KLK + + PG
Sbjct: 114 KIIFEEIEPGVIFEDEMFAITADELEHGMQSFGYRIVEKDKQGALNAAKLKADGVE-PGP 172
Query: 168 EIKKLKSS-------GTEI--TYTVTTPE----VAFTGD---TMSDFIVDEANIDVLRAR 211
+KLK+ G EI + P+ ++ GD T S+F + E A
Sbjct: 173 VFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRLAE------NAD 226
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV E+T+ D + A +Y H+ + E A++ K ++L H S+R+
Sbjct: 227 VLVHEATFEGDKGKM--AAEYMHSTTVQAAELAKRAGVKKLILTHISSRY 274
>gi|153832098|ref|ZP_01984765.1| ribonuclease Z [Vibrio harveyi HY01]
gi|148871713|gb|EDL70554.1| ribonuclease Z [Vibrio harveyi HY01]
Length = 286
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRM 108
LS N+L I+H H DH GLP +A+ G+ K P TII P E ++Q FE +
Sbjct: 50 LSLNYLRVICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP----EGIKQWFEATQAF 105
Query: 109 DHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV-------VYSVKQKLKQE 160
L L ++V + + F + A H + S Y +Y KL+Q
Sbjct: 106 TKLYLPFELHFIEVEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQS 165
Query: 161 YLGLPGDEIKKLKSSGTEITYT-VTTPEVAFT------------GDTMSDFIVDEANIDV 207
+P I G ++ Y T AFT GD +D +
Sbjct: 166 --NIPRGPIWGELVRGNDVEYQGQTLMSKAFTKLAHPPRKAIICGDNDKPEKLDSL---I 220
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV ESTY + E+A + GH + S++ YA+ + ++L HFS R++
Sbjct: 221 EGAHLLVHESTYSE--AMKERAGEVGHAYSSQVASYAQAKQAPNLILTHFSPRYQ 273
>gi|15835240|ref|NP_296999.1| ribonuclease Z [Chlamydia muridarum Nigg]
gi|270285412|ref|ZP_06194806.1| ribonuclease Z [Chlamydia muridarum Nigg]
gi|270289426|ref|ZP_06195728.1| ribonuclease Z [Chlamydia muridarum Weiss]
gi|301336809|ref|ZP_07225011.1| ribonuclease Z [Chlamydia muridarum MopnTet14]
gi|41017583|sp|Q9PK48.1|RNZ_CHLMU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|7190665|gb|AAF39456.1| AtsA/ElaC family protein [Chlamydia muridarum Nigg]
Length = 304
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 37/253 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELN-- 114
+FISH H DH GL + L ++ P P+ K+ ++L + + H +
Sbjct: 59 IFISHFHGDHCLGLGSMLMRLNLDKVSHPIHCYYPASGKKYFDRL--RYSTIYHETIKVV 116
Query: 115 -HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS------VKQKLKQEYLGLPGD 167
H + + E+F + ++A + H++ + G+ + + +K+K GL G
Sbjct: 117 EHPISSEGIVEDF---GNFRIEARQLDHLVDTLGWRITEPDTTKFISEKIKAA--GLKGP 171
Query: 168 EIKKLKSSGT-----------EITYTVTTPEVAFTGDTM-SDFIVDEANIDVLRARILVM 215
+++L + G +++YT +A D++ IVD A ARIL+
Sbjct: 172 IMQELINKGIIKVNNNIIRLEDVSYTRKGDSIAVVADSLPCQAIVDLAK----NARILLC 227
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE--IRRAVDAV 273
ESTY+++ + A+++ H + E A++ E + ++L HFSAR+ E ++ A +
Sbjct: 228 ESTYLEEHAHL--AKNHYHMTAKQAAEQAKRAEAQQLILTHFSARYNTTEQFVQEAGEIF 285
Query: 274 PAPLAGRVFALTE 286
P A F E
Sbjct: 286 PNVFAAEEFCSYE 298
>gi|410562984|pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D ++V
Sbjct: 175 QKIK-KGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVMVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|119871919|ref|YP_929926.1| beta-lactamase domain-containing protein [Pyrobaculum islandicum
DSM 4184]
gi|166991503|sp|A1RRK1.1|RNZ_PYRIL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|119673327|gb|ABL87583.1| RNAse Z [Pyrobaculum islandicum DSM 4184]
Length = 287
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 41/240 (17%)
Query: 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL-FEVHRRMDHSE 112
S + I+H H DH GLP V T K ++ P + + +E+L EV +
Sbjct: 56 SLTLVAITHQHEDHTLGLPGLVITNKFLGGKL-KVLAPRSMHKILERLGVEVSDSYEEGR 114
Query: 113 LNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLK-QEYLGLPGDEIK 170
T V E C H + + G++ + V KL + GLP +
Sbjct: 115 FKITCV------EVC-------------HTVDACGWLFQWDVGYKLDLSKVAGLPKWALT 155
Query: 171 KL-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
L + ++ + TPE + +TGDT + V +L+ E+
Sbjct: 156 NLIRGEAVKVGGRLITPEEVADLTHKRFRRLLYTGDTAP---CPQMWKTVGEVDVLIHEA 212
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV-DAVPAP 276
T+ DD ++A D GH+ +++ VE A+ + ++L H SAR+ E +A+ DAV P
Sbjct: 213 TFADD-VEPQKAHDEGHSTVADAVEAAKTLKADVLILTHISARYPSKERHKALADAVKPP 271
>gi|289191998|ref|YP_003457939.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
gi|288938448|gb|ADC69203.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
Length = 320
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI G+P + + G + R K I P KE +E ++ + E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEVIENSLKLGAH--YIEFP 114
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLP-GD 167
+ + E + ++ + A+ T H I S Y+ +K+ K + LG+ G
Sbjct: 115 IKVYEIYAKEPITVYNEENYEIIAYPTEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKIGP 174
Query: 168 EIKKLKSSGT--EITYTVTTPE-----------VAFTGDT--MSDFIVDEANIDVLRARI 212
++KKLK+ I + PE +A++GDT + DF + L +
Sbjct: 175 DLKKLKNGEAVKNIYGEIVKPEDVLLPPKKGFCLAYSGDTIPLEDF---GKYLKELGCDV 231
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
L+ E+T+ D S + A++ H+ + + V A+ + K ++L H SAR+ +E
Sbjct: 232 LIHEATFDDFSKDI--AKENMHSTIGDAVNIAKLADVKILILTHISARYDKEE 282
>gi|292654323|ref|YP_003534220.1| ribonuclease Z [Haloferax volcanii DS2]
gi|448293867|ref|ZP_21483970.1| ribonuclease Z [Haloferax volcanii DS2]
gi|342179243|sp|D4GZ88.1|RNZ_HALVD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|291370702|gb|ADE02929.1| ribonuclease Z [Haloferax volcanii DS2]
gi|445569788|gb|ELY24359.1| ribonuclease Z [Haloferax volcanii DS2]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 103/264 (39%), Gaps = 43/264 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDDSLAIHGPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +EQL VH + ++ + G D V+AF T H S GY +
Sbjct: 91 GSKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 148
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 149 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 208
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T E D A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 209 TRPLNSTVEVACD---ADLLVHDATFTDEE--AERAKQTAHSTAREAARVARDADVRRFA 263
Query: 254 LIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 264 LTHISARYAAD---------PSPL 278
>gi|170017531|ref|YP_001728450.1| beta-lactamase superfamily hydrolase [Leuconostoc citreum KM20]
gi|414596893|ref|ZP_11446465.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
gi|421877707|ref|ZP_16309248.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|421879667|ref|ZP_16311128.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|254808645|sp|B1MZQ4.1|RNZ_LEUCK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|169804388|gb|ACA83006.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc citreum KM20]
gi|372556485|emb|CCF25368.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|390446434|emb|CCF27248.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|390482257|emb|CCF28526.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
Length = 322
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 34/229 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P +KE V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGPKGVKEFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG 166
+ LV +++ F V A K H I+S G+ V + KL+ E +P
Sbjct: 115 YPLVFVELTAGVVFDDKTFRVIAAKMKHRIESWGFRVEEKDHPGELLVNKLRAE--NIPS 172
Query: 167 DEIKKLKSSGTEIT---------YTVTTPEVAFTGDTMSDFIVD---EANIDVL--RARI 212
I +G ++ + P A G ++ FI+D NI++L A +
Sbjct: 173 GPIFGQLKAGKRVSLPDGRILDGHDYVGP--AQRGRVVT-FILDTRPNDNIELLARHADV 229
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV ESTY + AR + H+ A + + ++L H SAR+
Sbjct: 230 LVHESTYGAGEDEAKMARAHAHSTSINAANNARRAQANQLILTHLSARY 278
>gi|448606638|ref|ZP_21659064.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
gi|445738846|gb|ELZ90358.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
Length = 317
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E+L VH + ++ + G D V+AF T H S GY +
Sbjct: 93 GSKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 151 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGAVVRSEQVVGDPRPGRTVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARVARDADVRRF 264
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 265 ALTHISARYAAD---------PSPL 280
>gi|268610450|ref|ZP_06144177.1| ribonuclease Z [Ruminococcus flavefaciens FD-1]
Length = 304
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
L I+H H DH+ GLP + ++ R +P I +P V+ L V + + + HT
Sbjct: 57 LLITHDHADHVTGLPGLLLSIGNCSRTEPLDIYLPESCVNAVKSLMSVCGYLPYEVVLHT 116
Query: 117 LVGLDVGEEFCMRKD---LFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLPGDEI 169
L + GE F + + L V H + GY ++ + K + LG+P
Sbjct: 117 L-SVSEGESFKIERIDPLLTVNTLPLKHSTKCIGYSFEFYRKPVFAPEKAKALGVPVQMW 175
Query: 170 KKLKSS-------GTEITYTVTTPE------VAFTGDTMS-DFIVDEANIDVLRARILVM 215
KKL + GT IT T E + +T DT D IV A A + V
Sbjct: 176 KKLHAGEDVTLDDGTVITQEQVTGEQRAPLKITYTTDTCPLDSIVPFAE----NADLFVC 231
Query: 216 ESTY--VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E Y +D ++++ GH + + E A+K K + L H+S K
Sbjct: 232 EGMYGTMDKKQSMDEK---GHMLMQDACELAKKANAKRLWLTHYSPAEK 277
>gi|145591595|ref|YP_001153597.1| ribonuclease Z [Pyrobaculum arsenaticum DSM 13514]
gi|166991501|sp|A4WKM8.1|RNZ_PYRAR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145283363|gb|ABP50945.1| RNAse Z [Pyrobaculum arsenaticum DSM 13514]
Length = 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 45/236 (19%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102
F IG PS S + ++H H DH+ GLP V T K ++ P
Sbjct: 48 FQIGVAPS---SLTLVAVTHMHEDHVLGLPGLVITAKFLGGKV-KLLGP----------- 92
Query: 103 EVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLKQEY 161
R H L+ +G+DV + + + L V+ + H + + G+++ + V KL +
Sbjct: 93 ----RSAHGILSR--LGVDVADGYDGGR-LRVRCVEVCHTVDACGWLLEWDVGYKLDLKK 145
Query: 162 L-GLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDT--MSDFIVDEANI 205
+ GLP + KL + E+ V PE + +TGDT + +
Sbjct: 146 VEGLPKWALTKLIRGEEVEVGGRVIRPEEVADPAHKRYRRLLYTGDTGPCPRMLKTVGEV 205
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
DVL + E+T+ DD +A + GH+ +++ VE A+ ++L H SAR+
Sbjct: 206 DVL-----IHEATFADDVDP-NKAHEEGHSTVADAVEAAKALRAGVLVLTHISARY 255
>gi|11498544|ref|NP_069772.1| ribonuclease Z [Archaeoglobus fulgidus DSM 4304]
gi|41017520|sp|O29323.1|RNZ_ARCFU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2649658|gb|AAB90300.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 306
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 41/259 (15%)
Query: 36 FPSLDLAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPP 86
F + FD G R + + + +FI+H H DH GL + T L R +
Sbjct: 28 FGGQRMLFDCGEGTQRQMMIAKTGFRNLDNIFITHLHTDHFIGLFGLIETMSLNERSREL 87
Query: 87 TIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQS 145
+ P E + LFE + +LN+ + ++ + ++ D F V AF+T H+++S
Sbjct: 88 NVYSPRA--EVLRALFEA---FGYDQLNYDIRVRELKDGEEVKFDGFKVVAFRTEHIVKS 142
Query: 146 QGYVVYSVKQKLK------QEYLGLPGDEIKKLKSSGTEITYT--VTTPE---------- 187
GY + ++ K ++ LG+P + + G I + TP+
Sbjct: 143 VGYAIIENDRRGKFNREKAEKELGIPPGPLYAKLARGESIVWKGRTITPDMVLGEKRRGR 202
Query: 188 -VAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
V +TGD+ + +++ R A IL+ ++++ ++ + A + GH+ E E A
Sbjct: 203 KVVYTGDSRPT----KRTVEIARNADILIHDASFKEELK--DWAIESGHSTAKEAAEVAR 256
Query: 246 KFENKAILLIHFSARHKVD 264
+ K ++L H S R+ D
Sbjct: 257 EANVKKLILTHISTRYSKD 275
>gi|448407311|ref|ZP_21573699.1| ribonuclease Z [Halosimplex carlsbadense 2-9-1]
gi|445675647|gb|ELZ28176.1| ribonuclease Z [Halosimplex carlsbadense 2-9-1]
Length = 316
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 34/251 (13%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P V T R P I P
Sbjct: 31 LLFDCGEGTQRQMMRFSTGFAVDHLFVTHCHGDHVLGIPGLVQTFDFNDREAPLAIHAPH 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ +E L + VG D E R + V+A +T H + GYV+
Sbjct: 91 GTRGQIEDLVHAAGNDPSFPVRINQVGPD--EVVLDRSEYEVRAVRTDHRTDAVGYVIVE 148
Query: 153 VKQKLK------QEYLGL-PGDEIKKL-KSSGTEITYTVTTPE-----------VAFTGD 193
+K + +E LGL PG E KL + E PE + +TGD
Sbjct: 149 DDRKGRFDREKAEEELGLPPGPEYSKLHRGESVEHQGRTIEPEEVVGPPRPGRRMVYTGD 208
Query: 194 TMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
T D A +LV ++T+ D ++AR H+ E A++ K +
Sbjct: 209 TRP---TDAIAAAAEDADLLVHDATFASD--WADRARATAHSTAREAAAIADRAGAKRLA 263
Query: 254 LIHFSARHKVD 264
L H S R+ D
Sbjct: 264 LTHISTRYAGD 274
>gi|23099311|ref|NP_692777.1| hypothetical protein OB1856 [Oceanobacillus iheyensis HTE831]
gi|41017560|sp|Q8EQ58.1|RNZ_OCEIH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|22777540|dbj|BAC13812.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 306
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 38/240 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP ++++R +P I P IKE VE R+ + L +
Sbjct: 59 IFITHLHGDHIYGLPGFLSSRSFQSGENQPLCIYGPIGIKEFVESTL----RLSQTNLTY 114
Query: 116 TLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGL-P 165
+ ++ E+ + ++ V+ K H I S GY + + KLKQ +G+ P
Sbjct: 115 PITIKEITEDGNLFETNEMMVETKKLQHGIDSYGYRIKEKDKPGELLVDKLKQ--IGIAP 172
Query: 166 G--------DEIKKLKSSGTEITYTVTTPE-----VAFTGDTMSDFIVDEANIDVLR-AR 211
G +EI L + V P ++ GDT + +D +I ++ +
Sbjct: 173 GPIYQQIKENEITTLDNGSIIYRNDVLGPAKKGKVISILGDTR--YSID--HIPFIKFSD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
ILV EST+ D + A +Y H+ + + A++ + L H S+R++ ++I ++
Sbjct: 229 ILVHESTFTQDKELL--AFEYNHSTNVQAAKLAKEANINKLYLTHVSSRYQAEDIDSIIE 286
>gi|392531158|ref|ZP_10278295.1| ribonuclease Z [Carnobacterium maltaromaticum ATCC 35586]
Length = 312
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P ++ P I+E V +V + L +
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDEPLVVYGPKGIREYVLTSLKV----SGTHLKYA 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYL---GLP-GDE 168
L ++ EE + +D V + H IQS GY + + L+ E L G+P G
Sbjct: 115 LSFHEIAEEGVLFQDQKFKVTCLELDHGIQSFGYRIEESDHQGMLQVEALKAAGVPFGPM 174
Query: 169 IKKLKSSGTEITYTVTTPEVA----FTGDTMSDFIV-------DEANIDVL--RARILVM 215
++K+ T T+ +V F G+ IV N +L A +LV
Sbjct: 175 YGRIKNGET---VTLENGQVIDGRDFVGEDQKGRIVTILGDTRKHPNSVLLAQNADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + ARDY H+ + E A++ K +LL H SAR+
Sbjct: 232 ESTF--DGADRKIARDYHHSTSLDAAEVAKEANAKRLLLTHISARY 275
>gi|336121415|ref|YP_004576190.1| ribonuclease Z [Methanothermococcus okinawensis IH1]
gi|334855936|gb|AEH06412.1| Ribonuclease Z [Methanothermococcus okinawensis IH1]
Length = 314
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 44/283 (15%)
Query: 41 LAFDIGRCPSR--------ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + N +FI+H H DHI GLP + + G R +P I P
Sbjct: 31 LLFDCGEGAQRQMIYTDISPMKINNIFITHLHGDHILGLPGLLQSIGFNGRTEPINIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KD---LFVKAFKTYHVIQSQG 147
KE +E + ++ + +N + ++ + M+ KD + ++ H + + G
Sbjct: 91 PETKETIENIL----KIGYHSINFNIKVYELSTKNPMKIKDTEKYEIYSYPMNHSVPTVG 146
Query: 148 YVVYSVKQ---KLKQEY-LGLP-GDEIKKLKSS------GTEITYT--VTTPE-----VA 189
Y+ K+ LK+ LG+ G +K+LK +I Y V P +
Sbjct: 147 YIFREKKKPQLNLKKAIELGVEVGPNLKRLKDGYPIKIKNGKIIYPEDVLLPPKKGICIG 206
Query: 190 FTGDT--MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
++GDT + DF + L IL+ E+T+ DS+ + A + H+ + + V A+
Sbjct: 207 YSGDTTPLEDF---GEFLKSLGCNILIHEATF--DSSKKDNALETMHSTIGDAVNIAKIA 261
Query: 248 ENKAILLIHFSARH--KVDEIRRAVDAVPAPLAGRVFALTEGF 288
++L H SAR+ K+D+ V+++ A + E F
Sbjct: 262 GVTELILTHISARYDDKMDDYINEVNSLNAENNNLNITIAEDF 304
>gi|448560538|ref|ZP_21633986.1| ribonuclease Z [Haloferax prahovense DSM 18310]
gi|445722188|gb|ELZ73851.1| ribonuclease Z [Haloferax prahovense DSM 18310]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDDSLAIHGPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E+L VH + ++ + G D V+AF T H S GY +
Sbjct: 91 GSKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 148
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 149 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 208
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 209 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARIARDADVRRF 262
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 263 ALTHISARYAAD---------PSPL 278
>gi|429205392|ref|ZP_19196669.1| ribonuclease Z [Lactobacillus saerimneri 30a]
gi|428146464|gb|EKW98703.1| ribonuclease Z [Lactobacillus saerimneri 30a]
Length = 310
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 43 FDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY---RMKPPTIIVP 91
FD+G R R N +FI+H H DHI GLP ++++R ++P TI P
Sbjct: 36 FDVGEGTQHQILRTNIRPRKINKIFITHLHGDHIFGLPGFLSSRSFQSGDHIEPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTY--HVIQSQGYV 149
+ +EQ + ++ S+L++ L +++ E + D + + + H IQ GY
Sbjct: 96 ----KGIEQFVKTSLQVSQSKLSYPLNFVEIKNEGLLLDDEHFQVYGRFLDHRIQCIGYR 151
Query: 150 VYSVKQKL-----KQEYLGLPGDEIKKLKSSGTEITYT----------VTTPEVAFTGDT 194
+ + K + LG+P + +G +T + P+
Sbjct: 152 IVEKDRPGELLVDKLQALGVPSGPVYGQLKAGATVTLADGRTINGQDFIGKPKPGRIVTI 211
Query: 195 MSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
+ D A D+ + A +LV EST+ + A +Y H+ + A K +
Sbjct: 212 LGDTRQVPAIFDLAKDANVLVHESTFGKGEARL--AHNYYHSTCQQAATIAAKAGVHHLY 269
Query: 254 LIHFSARH 261
L H SAR+
Sbjct: 270 LTHISARY 277
>gi|333369588|ref|ZP_08461698.1| ribonuclease Z [Psychrobacter sp. 1501(2011)]
gi|332970665|gb|EGK09647.1| ribonuclease Z [Psychrobacter sp. 1501(2011)]
Length = 357
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 48/243 (19%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVE--------------QLFEV 104
I+H H DH GLP +A+ + R + TII P IK+ +E + +
Sbjct: 73 ITHVHGDHCYGLPGLLASMAMSGRKESLTIIAPQAIKQFIEAVKATTELYLPFEIEFITI 132
Query: 105 HRRMDHSELN--HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL 162
+ +EL HT V L ++ K H ++S G+ + Q +K +
Sbjct: 133 ESLFESTELTPLHT-----VSVPLSPTHHLDIEVIKLSHRVESYGFKITQTVQTIKLDTE 187
Query: 163 GLPGDEIKKLK-------------SSGTEITYTVTTPEVA------FTGDTMSDFIVDEA 203
L D I+ S+G+++ T VA GD S +++EA
Sbjct: 188 KLKADGIEPTAAWGRLQAGEDVTLSNGSQLKSMDYTQRVAQVINIIVAGDNDSPQLLNEA 247
Query: 204 NIDVLRARILVMESTYV----DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259
A +LV E+TY D + E A D HT I +A+ + ++L HFSA
Sbjct: 248 ---AKGADLLVHEATYTQAVADKIMSREDAFDPMHTTAKRIASFAQSAKLNNLILTHFSA 304
Query: 260 RHK 262
R++
Sbjct: 305 RYQ 307
>gi|423612365|ref|ZP_17588226.1| ribonuclease Z [Bacillus cereus VD107]
gi|401245954|gb|EJR52306.1| ribonuclease Z [Bacillus cereus VD107]
Length = 307
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGIVFDDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEIGVKPG 172
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT ++ + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELENGTVLSGKDFIGPPQKGRVITILGDTRYCEASKELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A K K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAHDYFHSTTKQAASIALKANVKRLILTHISSRYQGD 278
>gi|448582762|ref|ZP_21646266.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
gi|445732410|gb|ELZ83993.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
Length = 317
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDASLAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E+L VH + ++ + G D V+AF T H S GY +
Sbjct: 93 GSKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 151 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARIARDADVRRF 264
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 265 ALTHISARYAAD---------PSPL 280
>gi|227514772|ref|ZP_03944821.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
gi|227086881|gb|EEI22193.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
Length = 310
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK+ V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ + + KD V A + H I S GY V +K++Q G+P
Sbjct: 115 LKFVELTGDGEVFKDQTFTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQA--GIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G +T + P+ VA GDT + D A A +L
Sbjct: 173 PLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTR---VTDNAVKLAKGADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T+ + + A +Y H+ ++ A+K + +LL H SAR+
Sbjct: 230 VHEATFAKNEQRL--AHNYYHSTSAQAATVAKKAGAQRLLLNHISARY 275
>gi|374326999|ref|YP_005085199.1| beta-lactamase [Pyrobaculum sp. 1860]
gi|356642268|gb|AET32947.1| beta-lactamase domain protein [Pyrobaculum sp. 1860]
Length = 287
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 51/255 (20%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQ 100
IG P S + ++H H DH GLP + T R+K ++ P +E+
Sbjct: 48 LQIGVSPP---SLTMVAVTHMHEDHTLGLPGLIITSRFLGGRLK---VLAPRTAHGVLER 101
Query: 101 LFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLKQ 159
L G++VG+ + + K H + + G++ + V KL
Sbjct: 102 L-----------------GVEVGDSH-VEERFKATCVKVCHTVDACGWLFEWDVGYKLDL 143
Query: 160 EYL-GLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEA-- 203
+ GLP + +L + E+ V TPE + +TGDT + EA
Sbjct: 144 SKVEGLPKRALTELIRGRPVEVGGRVVTPEEVADPAHKRFRRLLYTGDTAPCPKMWEAVG 203
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
N+DVL + E+T+ DD +A D GH+ + + VE A ++L H SAR+
Sbjct: 204 NVDVL-----IHEATFADDVDPA-KAHDEGHSTVDDAVEAARALGASVLVLTHISARYPD 257
Query: 264 DEIRR--AVDAVPAP 276
R A VP P
Sbjct: 258 KRRHRELASRVVPPP 272
>gi|255348710|ref|ZP_05380717.1| ribonuclease Z [Chlamydia trachomatis 70]
gi|255503250|ref|ZP_05381640.1| ribonuclease Z [Chlamydia trachomatis 70s]
gi|255506928|ref|ZP_05382567.1| ribonuclease Z [Chlamydia trachomatis D(s)2923]
gi|385241716|ref|YP_005809556.1| ribonuclease Z [Chlamydia trachomatis E/11023]
gi|385245323|ref|YP_005814146.1| ribonuclease Z [Chlamydia trachomatis E/150]
gi|386262699|ref|YP_005815978.1| Ribonuclease Z [Chlamydia trachomatis Sweden2]
gi|389858038|ref|YP_006360280.1| Ribonuclease Z [Chlamydia trachomatis F/SW4]
gi|389858914|ref|YP_006361155.1| ribonuclease Z [Chlamydia trachomatis E/SW3]
gi|389859790|ref|YP_006362030.1| ribonuclease Z [Chlamydia trachomatis F/SW5]
gi|289525387|emb|CBJ14864.1| Ribonuclease Z [Chlamydia trachomatis Sweden2]
gi|296434939|gb|ADH17117.1| ribonuclease Z [Chlamydia trachomatis E/150]
gi|296438659|gb|ADH20812.1| ribonuclease Z [Chlamydia trachomatis E/11023]
gi|380249110|emb|CCE14402.1| Ribonuclease Z [Chlamydia trachomatis F/SW5]
gi|380249985|emb|CCE13513.1| Ribonuclease Z [Chlamydia trachomatis F/SW4]
gi|380250863|emb|CCE12624.1| Ribonuclease Z [Chlamydia trachomatis E/SW3]
gi|440527048|emb|CCP52532.1| ribonuclease Z [Chlamydia trachomatis D/SotonD1]
gi|440529722|emb|CCP55206.1| ribonuclease Z [Chlamydia trachomatis E/SotonE4]
gi|440530621|emb|CCP56105.1| ribonuclease Z [Chlamydia trachomatis E/SotonE8]
gi|440531512|emb|CCP57022.1| ribonuclease Z [Chlamydia trachomatis F/SotonF3]
gi|440535088|emb|CCP60598.1| ribonuclease Z [Chlamydia trachomatis E/Bour]
Length = 304
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 118/256 (46%), Gaps = 43/256 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQL------FEVHRRMDH 110
+FISH H DH GL + L R+ P P+ K+ ++L E + ++H
Sbjct: 59 IFISHFHGDHCLGLGSMLMRLNLDRVSHPIHCYYPASGKKYFDRLRYSTIYHETIKVIEH 118
Query: 111 SELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS------VKQKLKQEYLGL 164
++H + D G + +++ + H++ + G+ + + +K+K GL
Sbjct: 119 P-IDHEGIVEDFG-------NFRIESRQLDHLVDTLGWRITEPDTTKFIPEKIKAA--GL 168
Query: 165 PGDEIKKLKSSGT-----------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARI 212
G +++L + G +++YT +A D++ +A +D+ R ARI
Sbjct: 169 KGPIMQELINKGQVKVNDTIVHLDDVSYTRKGDSIAVVADSLPC----QAIVDLARNARI 224
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE--IRRAV 270
L+ ESTY+++ + + A+ + H + E A++ E + ++L HFSAR+ E ++ A
Sbjct: 225 LLCESTYLEEHSHL--AKSHYHMTAKQAAEQAKRAEVQQLILTHFSARYNTTEEFVQEAG 282
Query: 271 DAVPAPLAGRVFALTE 286
+ P A F E
Sbjct: 283 EIFPNVFAAEEFCSYE 298
>gi|354489391|ref|XP_003506846.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Cricetulus
griseus]
gi|344242888|gb|EGV98991.1| Zinc phosphodiesterase ELAC protein 1 [Cricetulus griseus]
Length = 362
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 66/272 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTI------------------------ 88
+FI+H H DH GLP + T L +P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTRQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 89 -----IVPSCIKEDVEQLFEVHRRMD---HSELNHTLVGLDVGEE-FCMRKD--LFVKAF 137
IVP+ + VE+L E D S+ + LD E +C+ D VKAF
Sbjct: 118 YVVHEIVPTADQCPVEELKECSHVNDADSSSKGQGRTILLDTEENSYCLVDDEQFVVKAF 177
Query: 138 KTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT-- 180
+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 RLFHRIPSFGFSVVEKKRAGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLDNGVTISPQ 235
Query: 181 ----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTH 236
+ ++ GD S + D A +L+ E+T D + +++A+++GH+
Sbjct: 236 DVLKKPMVGRKICILGDC-SGVVGDSGVKLCFEADLLIHEATL--DDSQMDKAKEHGHST 292
Query: 237 LSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ K ++L HFS R+K + R
Sbjct: 293 PQMAAAFAKLCRAKRLVLTHFSQRYKPTALAR 324
>gi|375135382|ref|YP_004996032.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
gi|325122827|gb|ADY82350.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
Length = 318
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 44/240 (18%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q F++ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP----KEIQQWFKITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQE---YLGLPGDEIK 170
+DV E + +LF++A H + S + +Y S ++K+ + LG+P +I
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDIW 176
Query: 171 KLKSSGTEITYTVTTPEVAFTGDTM--SDFI-VDEANIDVL----------------RAR 211
G +V F G + DFI + I + A+
Sbjct: 177 GHLKRGY---------DVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKNAQ 227
Query: 212 ILVMESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
+L+ E+TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 228 LLIHEATYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|110669277|ref|YP_659088.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloquadratum
walsbyi DSM 16790]
gi|109627024|emb|CAJ53500.1| ribonuclease Z [Haloquadratum walsbyi DSM 16790]
Length = 318
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 115/278 (41%), Gaps = 39/278 (14%)
Query: 41 LAFDIGRCPSR-------ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R S + +F++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFSLSHIFVTHLHGDHILGIPGLIQTLDFNDRTDALAIHGPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQGYVVY 151
K + L E +N + + G ++ +++F+T H + S GY +
Sbjct: 91 GSKPHLRHLVETAGYRPGYPIN--IREIRPGSVAVDTEEYIIRSFETSHRGVTSIGYALI 148
Query: 152 SVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFT 191
+K + E LG+P G + +L G + ++ PE V +T
Sbjct: 149 ESDRKGRFNRDRAESLGVPVGPKFGRLHD-GESVKLADGSIVHPEQVVGDSRPGRRVVYT 207
Query: 192 GDTM-SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
GDT ++ V+ AN A +LV ++T+ D + +A+ GH+ E + A + + +
Sbjct: 208 GDTRPTETTVEAAN----NADLLVHDATFAADRAS--RAKQTGHSTAQEAAQIATRADAR 261
Query: 251 AILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+ L H S+R+ D DA A R F +G+
Sbjct: 262 QLALTHVSSRYAGDVTPLESDATAAFDGQRAFVPDDGY 299
>gi|372275851|ref|ZP_09511887.1| ribonuclease Z [Pantoea sp. SL1_M5]
gi|390436244|ref|ZP_10224782.1| ribonuclease Z [Pantoea agglomerans IG1]
Length = 303
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 38/236 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K VE + +++ T
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPRGLKTFVETALSISG--SYTDYPLT 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP-GD 167
+V ++ G + + F + A+ H ++ GY + + +LK E G+P G
Sbjct: 116 IVEIEAG--WTLDDGEFRISAWPLSHPVECFGYRIEQHDKPGLLDAARLKAE--GVPRGP 171
Query: 168 EIKKLKS------------SGTEITYTVTTPE-VAFTGDTMSDFIVDE--ANIDVLRARI 212
++LK +G + T + +A GDT + + AN+D +
Sbjct: 172 WFQQLKQGECVTLEDGRVINGADYLGPATPGKTLAIFGDTAPTEVALQLAANVD-----L 226
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+V E+T ++ VE+A GH+ + E A++ K ++ HFS+R+ ++ R
Sbjct: 227 MVHETTL--EAAMVEKANGRGHSTTLQAAEVAKRAGAKRLIATHFSSRYLAKDMNR 280
>gi|407979759|ref|ZP_11160567.1| ribonuclease Z [Bacillus sp. HYC-10]
gi|407413584|gb|EKF35281.1| ribonuclease Z [Bacillus sp. HYC-10]
Length = 309
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 37/252 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK V + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPRGIKAFVNAALSA----TQTHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEYL---GL-PGDEI 169
L +++ E D F V+A + H + + GY V V LK E L G+ PG
Sbjct: 115 LHIIEIDEGIVFEDDTFQVEAKRVSHGVPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLY 174
Query: 170 KKLKSSGT---------EITYTVTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+KLK+ T + T + P+ VAF+GDT + + I A A +LV
Sbjct: 175 QKLKNGETVTLEDGRRIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAK----NADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE-----IRRAV 270
E+T+ + E A Y H+ + + A++ K ++L H SAR++ +E ++ A
Sbjct: 231 EATFSKED--AELAYHYYHSTTEQAAKTAQEAGVKKLILTHISARYQGEESLKQLLKEAR 288
Query: 271 DAVPAPLAGRVF 282
D P A F
Sbjct: 289 DIFPLTEAAHDF 300
>gi|257416213|ref|ZP_05593207.1| ribonuclease Z [Enterococcus faecalis ARO1/DG]
gi|257158041|gb|EEU88001.1| ribonuclease Z [Enterococcus faecalis ARO1/DG]
Length = 313
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 25/227 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P I P I + V+ R+ S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSL----RVSQSRLSYP 114
Query: 117 LVGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GD 167
L +++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 115 LKFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGP 174
Query: 168 EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV-------DEANIDVL--RARILVMEST 218
KLK T + AF G+ IV N L RA +LV EST
Sbjct: 175 LYGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLAQRADVLVHEST 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ D + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 235 FNKDEAKM--AKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|256810849|ref|YP_003128218.1| ribonuclease Z [Methanocaldococcus fervens AG86]
gi|256794049|gb|ACV24718.1| ribonuclease Z [Methanocaldococcus fervens AG86]
Length = 314
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 54/245 (22%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI G+P + + G + R K I P KE ++ S LN
Sbjct: 54 NKIFITHLHGDHILGIPGLLQSMGFFGRNKEIEIFGPEGTKELIK-----------SSLN 102
Query: 115 HTLVGLDVGE------EFCMRKDLFVK--------AFKTYHVIQSQGYVVYSVKQKL--- 157
+G E E C ++ + + A+ T H + S Y+ +K+
Sbjct: 103 ---LGFHCIEFPIKVYEICEKEPITIYKEENYEIIAYPTKHSVPSYAYIFKEIKKPRLDI 159
Query: 158 -KQEYLGLP-GDEIKKLKSSGT--EITYTVTTPE-----------VAFTGDT--MSDFIV 200
K + LG+ G ++KKLK+ I + PE +A++GDT + DF
Sbjct: 160 EKAKKLGVRIGPDLKKLKNGEAVKNIHGEIVRPEDVLLPPKKGFCLAYSGDTLPLEDF-- 217
Query: 201 DEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
++ L +L+ E+T+ D + + A++ H+ + + V A+ + KA++L H SAR
Sbjct: 218 -GKYLEELGCDVLIHEATFDDLAKDI--AKENMHSTIGDAVSIAKLADVKALILTHISAR 274
Query: 261 HKVDE 265
+ +E
Sbjct: 275 YDKEE 279
>gi|126320779|ref|XP_001364239.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Monodelphis
domestica]
Length = 368
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 75/271 (27%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMK-----PPTIIVPSCIKEDVEQLFEVHRRMDHSE 112
+FI+H H DH GLP + T L P I P ++ + + E + HSE
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQNSSSASKTPMEIYGPVGLRNFIWKTME----LSHSE 113
Query: 113 LN-----HTLVG--------------------------------LDVGEE-FCMRKD--L 132
L H LV LD EE + + D
Sbjct: 114 LTFPYIVHELVPTEDQCPPGELKDFSSLDKMDSIPKEIQGRTILLDSAEESYVLVNDEQF 173
Query: 133 FVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGT 177
VKAF+ +H I S G+ V + QKLK LG+P G KLK+ +G
Sbjct: 174 LVKAFRLFHRIPSFGFSVAEKERPGRLNAQKLKD--LGVPPGPAYGKLKNGVTVVLENGV 231
Query: 178 EIT------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD 231
+++ + ++ GD S + D A +LV E+T D+ +++A++
Sbjct: 232 KVSPQDVLEKPIPGRKICILGDC-SGVVGDGGVKLCFEADLLVHEATL--DNAHMDKAKE 288
Query: 232 YGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
YGH+ E+A+ + K ++L HFS R+K
Sbjct: 289 YGHSTPQMAAEFAKMCKVKKLVLTHFSQRYK 319
>gi|431926503|ref|YP_007239537.1| beta-lactamase superfamily metal-dependent hydrolase [Pseudomonas
stutzeri RCH2]
gi|431824790|gb|AGA85907.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Pseudomonas stutzeri RCH2]
Length = 330
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GLP +A+ G+ R TII P I+ V ++ + EL+ V
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMMGRKATLTIIAPQGIETWVRTTLDMSQSWLGYELDFRAV 119
Query: 119 -GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ--KLKQEYL---GLPGDEIKKL 172
LD MR ++A H + GY + +L E L G+P +
Sbjct: 120 ESLDEWRSPNMR----IEATALSHRVPCYGYSFTEARPDPRLDIERLERDGVPRGPLWGQ 175
Query: 173 KSSGTEI-------------TYTVTTPEVAFTGDT-MSDFIVDEANIDVLRARILVMEST 218
+ G +I +++ + GD D + D A++LV E+T
Sbjct: 176 LARGFDIEHEGRVLRSDDYLSFSRAPQRIVIGGDNDRPDLLADACR----GAQLLVHEAT 231
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
Y + + + D+GH+ + + +A+ ++L HFSAR++
Sbjct: 232 YTE-AVANDARNDFGHSTAASVARFAQAVGLPNLVLTHFSARYQ 274
>gi|392422126|ref|YP_006458730.1| ribonuclease Z [Pseudomonas stutzeri CCUG 29243]
gi|390984314|gb|AFM34307.1| ribonuclease Z [Pseudomonas stutzeri CCUG 29243]
Length = 327
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 30/229 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-HTL 117
I+H H DH GLP +A+ G+ R TII P I+ V E+ + +L+ H +
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMMGRKAALTIIAPQGIETWVRATLEMSQSWLGYDLDFHAV 119
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQ-----EYLGLPGD----- 167
L MR ++A H + GY + + E G+P
Sbjct: 120 ESLGEWRNLNMR----IEATALSHRVPCYGYSFTEARPDPRLDIDRLERDGVPRGPLWGQ 175
Query: 168 ---------EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMEST 218
E +KL+S ++++ + GD ++ +A A++LV E+T
Sbjct: 176 LARGFDVEHEGRKLRSD-DYLSFSRAPQRIVIGGDNDRPELLADA---CRGAQLLVHEAT 231
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
Y + + + D+GH+ + + +A+ ++L HFSAR++ + R
Sbjct: 232 YTE-AVANDARNDFGHSTAASVARFAQTVGLPNLVLTHFSARYQKNAGR 279
>gi|227529067|ref|ZP_03959116.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
gi|227351079|gb|EEJ41370.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
Length = 309
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK+ V +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGNEPLTIYGPVGIKKFVMTALQV----SESRLSYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
L V +D +E + V H I GY + KL+Q+ +P
Sbjct: 115 LKFVEIDHSQELFNERGFKVTTMSLDHKIACYGYRIEEADHPGELQVDKLRQD--NIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
I +G + + P+ +A GDT A + +A +L
Sbjct: 173 PIYGQLKAGKTVKLDDGRVIDGKNYIGKPQPGRIIAILGDTRQ---TPNAVVLAHKADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V EST+ + + A +Y H+ + E A++ K +LL H SAR+
Sbjct: 230 VHESTFAKNE--AKMAHNYYHSTSLQAAEVAKQAGVKKLLLTHISARY 275
>gi|90962068|ref|YP_535984.1| ribonuclease Z [Lactobacillus salivarius UCC118]
gi|122448828|sp|Q1WT50.1|RNZ_LACS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|90821262|gb|ABD99901.1| Ribonuclease Z [Lactobacillus salivarius UCC118]
Length = 317
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ K
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAK 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
+ I + EV F G IV N+ +L A +
Sbjct: 171 APSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|60594108|pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z
gi|60594109|pdb|1Y44|B Chain B, Crystal Structure Of Rnase Z
Length = 320
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHXHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEXNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D + V
Sbjct: 175 QKIK-KGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVXVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|381184019|ref|ZP_09892696.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
gi|380316087|gb|EIA19529.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
Length = 304
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 50/246 (20%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRG-------LYRMKPPTIIVPSCIKEDVE 99
R P R +FI+H H DHI GLP +++R L PP I + IK+ +E
Sbjct: 48 RSPIRLSKLEKIFITHLHGDHIFGLPGLLSSRSFQGGETELTVYGPPGIAL--YIKDSLE 105
Query: 100 QLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGY-VVYSVK-- 154
+ S L + L V ++ GE F K V + H IQS GY ++ S K
Sbjct: 106 --------LSGSHLTYPLQIVEVESGEIFS-DKQWKVVCDELDHGIQSFGYRLMESAKPG 156
Query: 155 ----QKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPE------VAFTGDTMSDFIVD--- 201
KLK E G+P + + G TVT P+ AF G I+
Sbjct: 157 SLDAAKLKAE--GVPAGPLYQELKEGK----TVTLPDGRTIDGQAFIGPEQKGRIITIFG 210
Query: 202 -----EANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI 255
+ + + R A I+V E+T+ +++ VE A++Y H+ +E A++ + K ++L
Sbjct: 211 DTRQHKNELPLARNADIIVHEATF--EASKVEMAKEYMHSTTTEAAGLAKEADAKHLILT 268
Query: 256 HFSARH 261
H S+R+
Sbjct: 269 HISSRY 274
>gi|448357145|ref|ZP_21545851.1| ribonuclease Z [Natrialba chahannaoensis JCM 10990]
gi|445649953|gb|ELZ02884.1| ribonuclease Z [Natrialba chahannaoensis JCM 10990]
Length = 311
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 47/267 (17%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P + P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSISHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAVHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGE-EFCMRKDLF-VKAFKTYHVIQSQG 147
+ ++ L +R +N +VG+ + R D F V+AF T H QS G
Sbjct: 92 YGTRRQLKGLVNALGNRPSFPVRIN------EVGDGDVAYRADEFEVRAFGTDHDTQSVG 145
Query: 148 YVVYSVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITY---TVTTPE----------- 187
Y + +K + E LG+P G + KL +G + TV PE
Sbjct: 146 YALVEDDRKGRFDREHAEELGVPVGPKFSKLH-NGEPVELKDGTVVEPEQVVGEPRPGRS 204
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
+ +TGDT EA + +L+ ++T+ +D ++A H+ + E A +
Sbjct: 205 LVYTGDTRPTVATIEAADE---PDLLIHDATFAEDR--ADRAAKTAHSTAQQAAEIANRA 259
Query: 248 ENKAILLIHFSAR---HKVDEIRRAVD 271
+ L+H S+R H D + A D
Sbjct: 260 GADRLALMHISSRYAGHTGDHLAEARD 286
>gi|31981497|ref|NP_444485.2| zinc phosphodiesterase ELAC protein 1 [Mus musculus]
gi|41017770|sp|Q8VEB6.1|RNZ1_MOUSE RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|148677608|gb|EDL09555.1| elaC homolog 1 (E. coli), isoform CRA_b [Mus musculus]
Length = 362
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 68/277 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTI------------------------ 88
+FI+H H DH GLP + T L +P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVARQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 89 -----IVPSCIKEDVEQLFEVHRRMDHSELNHTLVG----LDVGEE-FCMRKD--LFVKA 136
+VP+ + VE+L E MD ++ + G LD E +C+ D VKA
Sbjct: 118 YVVHELVPTADQCPVEELREF-AHMDETDSSPKGQGRTILLDAEENSYCLVDDEQFVVKA 176
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKL+ LG+P G KLK+ +G I+
Sbjct: 177 FRLFHRIPSFGFSVVEKKRAGKLNAQKLRD--LGVPPGPAYGKLKNGISVVLDNGVTISP 234
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ +V GD S + D A +L+ E+T D + +++AR++GH+
Sbjct: 235 QDVLKKPMVGRKVCILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDSQMDKAREHGHS 291
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A+ K ++L HFS R+K + R +A
Sbjct: 292 TPQMAAAFAKLCRAKRLVLTHFSQRYKPTALAREGEA 328
>gi|423358819|ref|ZP_17336322.1| ribonuclease Z [Bacillus cereus VD022]
gi|401084691|gb|EJP92937.1| ribonuclease Z [Bacillus cereus VD022]
Length = 307
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 31/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS--------VKQKLKQEYLGL-P 165
L +++ EE + +D +V+ + H I+ GY + V Q L+ +G+ P
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDQLLE---MGVKP 171
Query: 166 GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVM 215
G K+LK GT + + P+ + D EA+ ++ + A +LV
Sbjct: 172 GPIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 232 EATFAAEDE--QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|365157768|ref|ZP_09354014.1| ribonuclease Z [Bacillus smithii 7_3_47FAA]
gi|363622667|gb|EHL73819.1| ribonuclease Z [Bacillus smithii 7_3_47FAA]
Length = 310
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHR-RMDHSELNH 115
+FI+H H DHI GLP + +R + P T+ P I + + EV R+ + +
Sbjct: 57 IFITHLHGDHIFGLPGLLGSRSFQAGETPLTVYGPKGIADFLRVSLEVSETRLRYPLIIE 116
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
+ V E+ + + V+ H I S GY + + KLK+ + +PG
Sbjct: 117 EIEEGIVFED----EQMIVETRLLEHGIPSYGYRITEKDKPGVLLVDKLKEMGI-MPGPL 171
Query: 169 IKKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLR-ARILV 214
KK+K+ T E + E VA GDT +A +D+ + A +LV
Sbjct: 172 YKKIKNGETVVLEDGRVIDGKEFVGPSKKGKVVAILGDTRPC----QAAVDLAKDADMLV 227
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
E T+ +S E A +Y H+ ++ E A+K KA+ L H S+R+ V+E
Sbjct: 228 HEGTFSAESA--EMAYEYFHSTTAQAAEIAKKANAKALCLNHVSSRYPVEE 276
>gi|325570355|ref|ZP_08146170.1| ribonuclease Z [Enterococcus casseliflavus ATCC 12755]
gi|325156683|gb|EGC68859.1| ribonuclease Z [Enterococcus casseliflavus ATCC 12755]
Length = 324
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 31/236 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P IK ++ + R+ +++++
Sbjct: 65 IFITHLHGDHIYGLPGLISSRSFQGGDTPLEIYGPKGIKAYIQTVL----RISQTKVSYP 120
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEY-----LGL-PGDE 168
L ++ EE + KD V + H I S GY + + + + LGL PG
Sbjct: 121 LHFFEIEEEGILFKDQQFEVSCLRLDHGIDSFGYRIVEASHQGELQVQALLELGLKPGPV 180
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLRARILVM 215
+LK G +I + V GDT A A +LV
Sbjct: 181 FGRLKKGEVVTLDDGRQINGADFLGQAKKGRIVTILGDTRK---CQNAVHLAKDADVLVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
EST+ + + AR Y H+ + E A++ K +LL H SAR+ +I V+
Sbjct: 238 ESTFNKEEAKL--ARAYFHSTTRQAAEVAQEAHAKRLLLTHISARYVGKDITNLVN 291
>gi|385812157|ref|YP_005848548.1| ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
gi|299783056|gb|ADJ41054.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
Length = 310
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK+ V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ + + KD V A + H I S GY V +K++Q G+P
Sbjct: 115 LKFVELTGDGEVFKDQTFTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQA--GIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G +T + P+ VA GDT + D A A +L
Sbjct: 173 PLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTR---VTDNAVKLAKGADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T+ + + A +Y H+ + A+K + +LL H SAR+
Sbjct: 230 VHEATFAKNEQRL--AHNYYHSTSXQAATVAKKAGAQRLLLNHISARY 275
>gi|421894260|ref|ZP_16324750.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
gi|385272804|emb|CCG90122.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
Length = 308
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R + TI P+ IK+ V R+ S+L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSL----RISESKLSYR 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
+ +++ +E + +D V + H I+S G+ V + KLK+ L +P
Sbjct: 115 IKFVEIAQEGVLFEDQNYIVNVAELDHRIKSYGFRVKEKDHSGELLVDKLKE--LAIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLR--AR 211
I G E+T + P+ V GDT NI++L A
Sbjct: 173 PIYGQIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQ-----TPNIELLAKDAD 227
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ ++ AR+Y H+ + + A++ + +LL H SAR+
Sbjct: 228 ALVHESTFGKQEGSL--ARNYYHSTNIQAAKIAKQANARQLLLTHISARY 275
>gi|229061814|ref|ZP_04199147.1| Ribonuclease Z [Bacillus cereus AH603]
gi|423512245|ref|ZP_17488776.1| ribonuclease Z [Bacillus cereus HuA2-1]
gi|228717560|gb|EEL69224.1| Ribonuclease Z [Bacillus cereus AH603]
gi|402449216|gb|EJV81053.1| ribonuclease Z [Bacillus cereus HuA2-1]
Length = 307
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIAVQANAKRLILTHISSRYQGD 278
>gi|116492893|ref|YP_804628.1| beta-lactamase superfamily hydrolase [Pediococcus pentosaceus ATCC
25745]
gi|122265643|sp|Q03F36.1|RNZ_PEDPA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116103043|gb|ABJ68186.1| RNAse Z [Pediococcus pentosaceus ATCC 25745]
Length = 308
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R + TI P+ IK+ V R+ S+L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSL----RISESKLSYR 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
+ +++ +E + +D V + H I+S G+ V + KLK+ L +P
Sbjct: 115 IKFVEIAQEGVLFEDQNYIVNVAELDHRIKSYGFRVKEKDHPGELLVDKLKE--LAIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLR--AR 211
I G E+T + P+ V GDT NI++L A
Sbjct: 173 PIYGQIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQ-----TPNIELLAKDAD 227
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ ++ AR+Y H+ + + A++ + +LL H SAR+
Sbjct: 228 ALVHESTFGKQEGSL--ARNYYHSTNIQAAKIAKQANARQLLLTHISARY 275
>gi|448611228|ref|ZP_21661862.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
gi|445743660|gb|ELZ95141.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
Length = 311
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 36/252 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLDFNERDDALAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K+ +E L VH + ++ + G D V+AF+T H S GY +
Sbjct: 93 GSKQHLETL--VHAGGYQPGFHVSVHEVRPGTVAYRDDDYEVRAFETEHRTSSIGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAFTGD 193
+ + K E LG+P G++++ + E V P +V +TGD
Sbjct: 151 DDRPGRFDREKAESLGVPVGPAFGRLHAGEDVELEDGTVVESEQVVGDPRSGRKVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ ++A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--ADRAKQTAHSTAREAARVARDADVRRF 264
Query: 253 LLIHFSARHKVD 264
L H SAR+ +
Sbjct: 265 ALTHISARYAAN 276
>gi|159042239|ref|YP_001541491.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157921074|gb|ABW02501.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 305
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 56/264 (21%)
Query: 45 IGRCPSRALSQNFLFISHAHMDHIGGLPMYVATR-GLYRMKPPTIIVPSCIKEDVEQLFE 103
IG P L + ++H H DH+ GLP +AT L R+ P T+I P I +
Sbjct: 51 IGVSP---LKLTHIMVTHLHADHVNGLPGLLATMLMLNRVTPVTVIGPVGISDFTPTPVN 107
Query: 104 VHRRMDHSELNHTLVGLDVGEEFCM---RKDLFVKAFKTYHVIQSQGYVVYSVKQKL--- 157
+++ EL T E + +L ++ TYH +Q+ Y++ ++++ +
Sbjct: 108 SSFKINVIELKPT-------SEITLIESMDNLELRYVTTYHTVQNNSYLI-TLRRPVGTF 159
Query: 158 ---KQEYLGLPGDEIKKLKSSGTEITYTVTTPE-------------------VAFTGDTM 195
K LG+P +++ ++ T+T P+ V +TGDT
Sbjct: 160 NPGKARELGIPVTYWRRI-----QMGETITLPDGRVIEPSMVMSNVGDKSIKVVYTGDTS 214
Query: 196 -SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
D +V A + IL+ +STY+ + + +A + GH+ + A++ K ++L
Sbjct: 215 PGDNVVKLAK----DSSILIHDSTYLPNDS--NEAENRGHSTCLDAALDAKEAGTKLLVL 268
Query: 255 IHFSARHK----VDEIRRAVDAVP 274
H S R+ D ++ A D P
Sbjct: 269 THMSFRYGYEYYWDFLKCASDVFP 292
>gi|448622372|ref|ZP_21669066.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
gi|445754454|gb|EMA05859.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
Length = 317
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 106/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E L VH + ++ + G D V+AF T H S GY +
Sbjct: 93 GSKGHLETL--VHAGGYQPGFHVSIHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 151 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARIARDADVRRF 264
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 265 ALTHISARYAAD---------PSPL 280
>gi|56420868|ref|YP_148186.1| ribonuclease Z [Geobacillus kaustophilus HTA426]
gi|375009401|ref|YP_004983034.1| ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
gi|76363377|sp|Q5KXG8.1|RNZ_GEOKA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56380710|dbj|BAD76618.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359288250|gb|AEV19934.1| Ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 307
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P T+ P I+ VE V ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRSFVETALAVSGTKLRYELN-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PG-- 166
+V +D G F + V A + H + S G+ V V++ L + + LG+ PG
Sbjct: 117 IVEIDEGVIFDDER-FSVIAKRLDHGMPSYGFRV--VEKDLPGPLLVERLQALGVRPGPI 173
Query: 167 -DEIKKLKS----SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
EIK+ K+ GT I V P+ + D EA I++ R A ++V E+T
Sbjct: 174 YQEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDADVVVHEAT 233
Query: 219 YVDDSTTVEQ--ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ EQ A DY H+ ++ E A + K ++L H S+R++
Sbjct: 234 F----AAAEQRLAHDYFHSTTTDAAEVARRAGAKRLILTHISSRYQ 275
>gi|429191770|ref|YP_007177448.1| ribonuclease Z [Natronobacterium gregoryi SP2]
gi|448325083|ref|ZP_21514482.1| ribonuclease Z [Natronobacterium gregoryi SP2]
gi|429135988|gb|AFZ72999.1| ribonuclease Z [Natronobacterium gregoryi SP2]
gi|445616440|gb|ELY70066.1| ribonuclease Z [Natronobacterium gregoryi SP2]
Length = 308
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 41/265 (15%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P +I P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVFGIPGLLQTMDFNDREEPLSIHAP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ ++ L ++ T VG + R D + V+AF+T H +S GY +
Sbjct: 92 HGTRRKLQGLVNALGNHPSFPVHVTEVG---DGDVAYRADEYEVRAFETDHDARSVGYAL 148
Query: 151 YSVKQK-----LKQEYLGLP-GDEIKKLKSS-------GT--EITYTVTTPE----VAFT 191
+K + E LG+P G + KL GT E V P + +T
Sbjct: 149 VEDDRKGRFDRERAEELGVPVGPKFSKLHEGQPVELEDGTVVEPDQVVGDPRPGRTIVYT 208
Query: 192 GDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
GDT A I+V +L+ ++T+ DD E+A + H+ E A + K
Sbjct: 209 GDTRPTV----ATIEVADEPDLLIHDATFADDR--AERATETAHSTARGAAEIAARAGAK 262
Query: 251 AILLIHFSAR---HKVDEIRRAVDA 272
+ L+H S+R H + R+A +A
Sbjct: 263 RLALMHISSRYAGHTAEHERQAREA 287
>gi|114052516|ref|NP_001039792.1| zinc phosphodiesterase ELAC protein 1 [Bos taurus]
gi|109893820|sp|Q29RY4.1|RNZ1_BOVIN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|88758635|gb|AAI13357.1| ElaC homolog 1 (E. coli) [Bos taurus]
gi|296473700|tpg|DAA15815.1| TPA: elaC homolog 1 [Bos taurus]
gi|440905134|gb|ELR55559.1| Zinc phosphodiesterase ELAC protein 1 [Bos grunniens mutus]
Length = 363
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 69/278 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELQESVQVDKTDNPPKEGEGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD +VD+A + + A +L+ E+T D T +++A+++GH
Sbjct: 236 QDVLKKPIVGRKICILGDCSG--VVDDAGVKLCFEADLLIHEATL--DDTQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+ +A+ + K ++L HFS R+K + R +A
Sbjct: 292 STPQMAATFAKLCQAKRLVLTHFSQRYKPVALAREGEA 329
>gi|379003792|ref|YP_005259464.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Pyrobaculum oguniense TE7]
gi|375159245|gb|AFA38857.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Pyrobaculum oguniense TE7]
Length = 287
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102
F IG PS S + ++H H DH+ GLP V T K ++ P E + +L
Sbjct: 48 FQIGVAPS---SLTLVAVTHMHEDHVLGLPGLVITAKFLGGKV-KLLGPRSAHEVLSRL- 102
Query: 103 EVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLKQEY 161
G++V + + + L ++ + H + + G+++ + V KL +
Sbjct: 103 ----------------GVEVADSYDGGR-LKIRCVEVCHTVDACGWLLEWDVGYKLDLKK 145
Query: 162 L-GLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDT--MSDFIVDEANI 205
+ GLP + KL + E+ V PE + +TGDT + +
Sbjct: 146 VEGLPKWALTKLIRGEEVEVGGRVIRPEEVADPAHKRYRRLLYTGDTGPCPRMLKAVGEV 205
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
DVL + E+T+ DD ++A + GH+ +++ VE A+ ++L H SAR+ D+
Sbjct: 206 DVL-----IHEATFADDVDP-KKAHEEGHSTVADAVEAAKALRAGVLVLTHISARY-TDK 258
Query: 266 IRRAVDAVPAPLAGRV 281
R LAGRV
Sbjct: 259 ARH------RQLAGRV 268
>gi|403238201|ref|ZP_10916787.1| ribonuclease Z [Bacillus sp. 10403023]
Length = 307
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R K T+ P IK +E V + + +
Sbjct: 59 VFITHLHGDHIFGLPGFLGSRSFQGGKSLLTVYGPKGIKAFIETSLTVST----THIRYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGDE 168
L +++ E D F V A + H IQS GY + + KL +E + PG
Sbjct: 115 LEVVEIEEGVIFEDDQFCVIAKELDHGIQSFGYRIVEKDLPGTLLVDKLSKEGIK-PGPI 173
Query: 169 IKKLKSSGTEITYT---------VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
+K+K T + + P+ + D + +I++ + A +L+ E+T
Sbjct: 174 YQKIKEGQTVVLEDGRHLNGKEYIGAPKKGRIATILGDTRYVKESIELAKDADLLIHEAT 233
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
+ S + A DY H+ ++ E A+ K ++L H S+R++ D+ R ++
Sbjct: 234 F--RSKEADLAHDYFHSTTTQAAEVAKLASVKNLILTHISSRYQGDDSRELLE 284
>gi|423522019|ref|ZP_17498492.1| ribonuclease Z [Bacillus cereus HuA4-10]
gi|401176681|gb|EJQ83876.1| ribonuclease Z [Bacillus cereus HuA4-10]
Length = 307
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQGD 278
>gi|422845501|ref|ZP_16892211.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325684269|gb|EGD26442.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 309
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I EQ + R+ +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGI----EQFVKTSLRISKTKISYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
+ V L+ G + + V K H I S G+ V + KL E+ G
Sbjct: 115 IKFVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGP 173
Query: 168 EIKKLK-SSGTEITYTVTTPEVAFTGDTMSDFIV----DEANIDVLR-----ARILVMES 217
+ KLK E+ F G IV D + +R A +LV E+
Sbjct: 174 LLGKLKRGEQVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ D++ + ARDY H+ ++ E A + + L H SAR+
Sbjct: 234 TF--DASEGKLARDYYHSTCTQAAETAAACQVGHLYLTHVSARY 275
>gi|45358469|ref|NP_988026.1| ribonuclease Z [Methanococcus maripaludis S2]
gi|56749433|sp|Q6LYT2.1|RNZ_METMP RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|44921227|emb|CAF30462.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 308
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 43 FDIGRCPSR--------ALSQNFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G R + N +FI+H H DH+ GLP +A +G R KP I P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQG--RKKPLNIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ + +E + V +N + E + V ++ H + + YV
Sbjct: 91 AETVKMIEHILGVGYHSIDYPINVHEISSKTPERIIFTNNYEVFSYPVVHSVPALAYVFK 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKS------SGTEITYT-VTTPE-----VAFTGDT 194
VK+ K + LG+ G ++K+LK +G IT VT P V ++GDT
Sbjct: 151 QVKKPRMDLEKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGICVGYSGDT 210
Query: 195 M-----SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+ ++F+ + L+ L+ E+T+ D T A++ H+ ++ + A+
Sbjct: 211 IPLKEFAEFLKE------LKCNTLIHEATF--DKTMERNAKETLHSTATDALNIAKLSGV 262
Query: 250 KAILLIHFSARH 261
+LL H SAR+
Sbjct: 263 STVLLTHISARY 274
>gi|431751691|ref|ZP_19540378.1| ribonuclease Z [Enterococcus faecium E2620]
gi|430614985|gb|ELB51955.1| ribonuclease Z [Enterococcus faecium E2620]
Length = 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V A K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N D I
Sbjct: 174 LYGKLKQGETVQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|402817053|ref|ZP_10866642.1| ribonuclease Z [Paenibacillus alvei DSM 29]
gi|402505159|gb|EJW15685.1| ribonuclease Z [Paenibacillus alvei DSM 29]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 119/280 (42%), Gaps = 40/280 (14%)
Query: 11 SGRGMQLQGYKVEGLSIAGHETCIIFPSLDLA----FDIGRCPSRALSQNFLFISHAHMD 66
+G GM V G+++ +E F D + + P + F+FI+H H D
Sbjct: 8 TGAGMPTTRRNVSGIALRLYEERGSFWMFDCGEGTQHQVLQSPLKLGKCEFIFITHLHGD 67
Query: 67 HIGGLPMYVATRGLYR--MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE 124
H+ GLP +++R Y+ + P T+ P+ + + +F ++ + L + L ++
Sbjct: 68 HLFGLPGLLSSR-TYQGGVSPLTVFGPAGLHRFIHTVF----KLSETHLPYELHIQEIES 122
Query: 125 EFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ------KLKQEYLGLPGDEIKKLK---- 173
+ F + H + S GY + ++ KL +E PG +LK
Sbjct: 123 GVIWEDEQFIITTLPLDHRVPSFGYRIQEKEKPGRLDLKLLKEKELPPGPLYGQLKRGQD 182
Query: 174 ---SSGTEITYT------VTTPEVAFTGDT--MSDFIVDEANIDVLRARILVMESTYVDD 222
S+G I + + VA GDT + + ++D ILV E+T+++D
Sbjct: 183 VILSNGERIQASSVIGKPIPGKSVAILGDTRPCENAVTLAKDVD-----ILVHEATFMED 237
Query: 223 STTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E A ++GH+ + + A K + L HFS+R+
Sbjct: 238 KR--ENANEFGHSTARQAAQTAVSGGAKKLALTHFSSRYN 275
>gi|417552171|ref|ZP_12203241.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|417562383|ref|ZP_12213262.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|421198101|ref|ZP_15655268.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|421457009|ref|ZP_15906346.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|421632144|ref|ZP_16072806.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|421804099|ref|ZP_16240009.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
gi|395524965|gb|EJG13054.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|395566069|gb|EJG27714.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|400206733|gb|EJO37704.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|400392430|gb|EJP59476.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|408710280|gb|EKL55510.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|410411470|gb|EKP63339.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 38/237 (16%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R KP +I P ++++Q FE+ ++ L +++
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP----KEIQQWFEITAQLTDLHLPYSIK 116
Query: 119 GLDVGEEF---CMRKDLFVKAFKTYHVIQSQGYVVY--SVKQKLKQEYLGLPGDEIKKLK 173
+DV E + +LF++A H + S + +Y S ++K+ + L G
Sbjct: 117 FIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLG------V 170
Query: 174 SSGTEITYTVTTPEVAFTGDTM--SDFI-VDEANIDVL----------------RARILV 214
S G + +V F G + DFI + I + A++L+
Sbjct: 171 SKGDIWGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADACKDAQLLI 230
Query: 215 MESTYVDDSTTVEQ-ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
E+TY+ T +++ + H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 231 HEATYL--QTVLDKVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|423470363|ref|ZP_17447107.1| ribonuclease Z [Bacillus cereus BAG6O-2]
gi|423558290|ref|ZP_17534592.1| ribonuclease Z [Bacillus cereus MC67]
gi|401191558|gb|EJQ98580.1| ribonuclease Z [Bacillus cereus MC67]
gi|402436492|gb|EJV68522.1| ribonuclease Z [Bacillus cereus BAG6O-2]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQGD 278
>gi|227551356|ref|ZP_03981405.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257896027|ref|ZP_05675680.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257898655|ref|ZP_05678308.1| ribonuclease Z [Enterococcus faecium Com15]
gi|293378801|ref|ZP_06624958.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|293570538|ref|ZP_06681593.1| ribonuclease Z [Enterococcus faecium E980]
gi|424763632|ref|ZP_18191102.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|425054097|ref|ZP_18457612.1| ribonuclease Z [Enterococcus faecium 505]
gi|430841145|ref|ZP_19459064.1| ribonuclease Z [Enterococcus faecium E1007]
gi|431071397|ref|ZP_19494368.1| ribonuclease Z [Enterococcus faecium E1604]
gi|431104268|ref|ZP_19496992.1| ribonuclease Z [Enterococcus faecium E1613]
gi|431582257|ref|ZP_19520206.1| ribonuclease Z [Enterococcus faecium E1861]
gi|431737852|ref|ZP_19526804.1| ribonuclease Z [Enterococcus faecium E1972]
gi|431740270|ref|ZP_19529187.1| ribonuclease Z [Enterococcus faecium E2039]
gi|431756532|ref|ZP_19545164.1| ribonuclease Z [Enterococcus faecium E3083]
gi|227179475|gb|EEI60447.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257832592|gb|EEV59013.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257836567|gb|EEV61641.1| ribonuclease Z [Enterococcus faecium Com15]
gi|291609484|gb|EFF38751.1| ribonuclease Z [Enterococcus faecium E980]
gi|292642594|gb|EFF60747.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|402422529|gb|EJV54766.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|403036622|gb|EJY47965.1| ribonuclease Z [Enterococcus faecium 505]
gi|430493921|gb|ELA70171.1| ribonuclease Z [Enterococcus faecium E1007]
gi|430567030|gb|ELB06116.1| ribonuclease Z [Enterococcus faecium E1604]
gi|430569856|gb|ELB08835.1| ribonuclease Z [Enterococcus faecium E1613]
gi|430594147|gb|ELB32117.1| ribonuclease Z [Enterococcus faecium E1861]
gi|430598458|gb|ELB36199.1| ribonuclease Z [Enterococcus faecium E1972]
gi|430603806|gb|ELB41319.1| ribonuclease Z [Enterococcus faecium E2039]
gi|430620386|gb|ELB57188.1| ribonuclease Z [Enterococcus faecium E3083]
Length = 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V A K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N D I
Sbjct: 174 LYGKLKQGETIQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|218899304|ref|YP_002447715.1| ribonuclease Z [Bacillus cereus G9842]
gi|228902652|ref|ZP_04066803.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|228941303|ref|ZP_04103856.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228967182|ref|ZP_04128218.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228974235|ref|ZP_04134805.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980826|ref|ZP_04141131.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|384188212|ref|YP_005574108.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|402564447|ref|YP_006607171.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|410676530|ref|YP_006928901.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|423385645|ref|ZP_17362901.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|423527999|ref|ZP_17504444.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|423561383|ref|ZP_17537659.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|434377249|ref|YP_006611893.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|452200602|ref|YP_007480683.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|254808608|sp|B7IWQ5.1|RNZ_BACC2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218543591|gb|ACK95985.1| ribonuclease Z [Bacillus cereus G9842]
gi|228778995|gb|EEM27257.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|228785575|gb|EEM33584.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228792551|gb|EEM40117.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228818462|gb|EEM64534.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228857093|gb|EEN01602.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|326941921|gb|AEA17817.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|401201640|gb|EJR08505.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|401635701|gb|EJS53456.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|401793099|gb|AFQ19138.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|401875806|gb|AFQ27973.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|402451662|gb|EJV83481.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|409175659|gb|AFV19964.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|452105995|gb|AGG02935.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|423452551|ref|ZP_17429404.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
gi|401140189|gb|EJQ47746.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQGD 278
>gi|301300910|ref|ZP_07207082.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851509|gb|EFK79221.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 317
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ K
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAK 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKILAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|156937827|ref|YP_001435623.1| ribonuclease Z [Ignicoccus hospitalis KIN4/I]
gi|166991104|sp|A8ABB4.1|RNZ_IGNH4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|156566811|gb|ABU82216.1| ribonuclease Z [Ignicoccus hospitalis KIN4/I]
Length = 300
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+F+SH H DH+ GLP + T + + +++ P +K+ + FE+ +
Sbjct: 59 VFVSHLHGDHVLGLPGLLQTMAMASRRDELLVIGPKGLKDFLLSSFELTYFYPPYPIKVV 118
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV-KQKLKQEYL---GLPGDEIKKL 172
V D E R +L +K F H + + G V + K+K++ + L GLP +L
Sbjct: 119 EVLRDA--EITYR-NLKLKVFPVNHTVPAFGVSVETASKRKVRADVLEREGLPKRLWGRL 175
Query: 173 KSSG-----------TEITYTVTTPEVAFTGDTMS-DFIVDEANIDVLRARILVMESTYV 220
+ + T+ +V ++GDT + +V+EA A +LV E+T+
Sbjct: 176 QRGEDVVWEGRVFKYEDFTFEGERIKVVYSGDTAPCERLVEEAE----GADLLVHEATFT 231
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGR 280
+ E+A D GH+ + A + K +L++HFSAR+K ++RR ++ A R
Sbjct: 232 KELK--EEAHDRGHSTAEDAATAAARAGVKQLLMVHFSARYK--DLRRHLEE-----ARR 282
Query: 281 VF 282
VF
Sbjct: 283 VF 284
>gi|448238624|ref|YP_007402682.1| ribonuclease Z [Geobacillus sp. GHH01]
gi|445207466|gb|AGE22931.1| ribonuclease Z [Geobacillus sp. GHH01]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P T+ P I+ VE V ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PG-- 166
+V +D G F + V A + H + S G+ V V++ L + + LG+ PG
Sbjct: 117 IVEIDEGVIFDDER-FSVIAKRLDHGMPSYGFRV--VEKDLPGPLLVERLQALGVRPGPI 173
Query: 167 -DEIKKLKS----SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
EIK+ K+ GT I V P+ + D EA I++ R A ++V E+T
Sbjct: 174 YQEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDADVVVHEAT 233
Query: 219 YVDDSTTVEQ--ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ EQ A DY H+ ++ E A + K ++L H S+R++
Sbjct: 234 F----AAAEQRLAHDYFHSTTTDAAEVARRAGAKRLILTHISSRYQ 275
>gi|88604120|ref|YP_504298.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88189582|gb|ABD42579.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 445
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+ +SH H+DHIG +P V +R P I P I E V+Q E ++ +N+ L
Sbjct: 77 VILSHGHLDHIGAVPKLV-----HRYNAPIIGTPYTI-ELVKQQIEGEKKFG---VNNKL 127
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVI---------QSQGYVVYSVKQKL-KQEYLGLPGD 167
+ L G+ + + L ++ +T H I +G +VY++ KL + LG P D
Sbjct: 128 IALKCGQRYNISNTLGMEFVRTQHSIIDTATVALYTPKGAIVYALDFKLDRNPVLGEPPD 187
Query: 168 --EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTT 225
++KK+ G T +T V G S+ I DV+ ++Y DD
Sbjct: 188 FAKLKKIGKEGVLCLITEST-NVNKKGRCPSEQIAKNMVRDVI--------TSYEDDKNA 238
Query: 226 VEQARDYGH-THLSEIVEYAEKFENKAILL 254
+ + H + I E A + K +LL
Sbjct: 239 IIVSTFASHIARVKTIAECAHEIGRKPLLL 268
>gi|456011721|gb|EMF45458.1| DNA polymerase IV [Planococcus halocryophilus Or1]
Length = 752
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 26/222 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P I P IKE V+ + R + L +
Sbjct: 492 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLDIYGPVGIKEYVQMTLTLSR----THLTYP 547
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKL---KQEYLGLP-GDEI 169
+ ++ E +L V+ HVI S G+ + + KL K LG+P G +
Sbjct: 548 IAYHELSEGMIFEDELMTVETRLLDHVIPSYGFRITQKPLPPKLLINKALSLGVPKGPLL 607
Query: 170 KKLKSSGTEITYT---------VTTPEV-AFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
KLK +G +I VT E F + D +A +++ R A +LV E+T
Sbjct: 608 AKLK-TGQDIELANGQWVRSGDVTESEQPGFVVTILGDTRFCKAAVELGRGADVLVHEAT 666
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+ D+T + A +YGH + + E A +++ H SAR
Sbjct: 667 F--DATAKKMATEYGHATVYDAAETARLARANTLIMNHISAR 706
>gi|398799521|ref|ZP_10558810.1| ribonuclease Z [Pantoea sp. GM01]
gi|398098491|gb|EJL88777.1| ribonuclease Z [Pantoea sp. GM01]
Length = 303
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 46/233 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRR-----MDHS 111
+FI+H H DHI GLP + +R + + P TI P+ I++ +E + ++
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPAGIRQFIETALSLSGSYTSYPLEIV 117
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGL 164
E+ LV LD GE V A+ HVI+ GY + + +LK E G+
Sbjct: 118 EIEAGLV-LDDGE-------FRVTAWPMNHVIECFGYRIEQHDKPGFLDAPRLKAE--GV 167
Query: 165 P-GDEIKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDE--ANIDVL 208
P G + LK+ +G E T +V A GDT + + AN DV
Sbjct: 168 PRGPWYQDLKAGKRIQLEDGREINGAEYLGPATKGKVLAIFGDTAPTDVALQLAANADV- 226
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+V E+T ++ E+A GH+ + E A++ K ++ HFS+R+
Sbjct: 227 ----MVHETTL--ETALQEKANGRGHSTTIQAAEVAKQSGAKRLIATHFSSRY 273
>gi|448551104|ref|ZP_21629246.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
gi|445710660|gb|ELZ62458.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 106/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDASLAIHGPP 90
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E L VH + ++ + G D V+AF T H S GY +
Sbjct: 91 GSKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 148
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 149 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 208
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 209 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARIARDADVRRF 262
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 263 ALTHVSARYAAD---------PSPL 278
>gi|157817712|ref|NP_001100876.1| zinc phosphodiesterase ELAC protein 1 [Rattus norvegicus]
gi|149064598|gb|EDM14801.1| elaC homolog 1 (E. coli) (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 362
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 115/277 (41%), Gaps = 68/277 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-----YRMKPPTI------------------------ 88
+FI+H H DH GLP + T L +P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVSRQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 89 -----IVPSCIKEDVEQLFEVHRRMDHSELNHTLVG----LDVGEE-FCMRKD--LFVKA 136
+VP+ + VE+L E +MD ++ + G LD E +C+ D VKA
Sbjct: 118 YVVHELVPTADQCPVEELRE-SAQMDEADSSPKGQGRTILLDAEENSYCLVDDEQFVVKA 176
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKL+ LG+P G KLK+ +G I+
Sbjct: 177 FRLFHRIPSFGFSVVEKKRTGKLSAQKLRD--LGVPPGPAYGKLKNGISVVLDNGVTISP 234
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ +V GD S + D A +L+ E+T D + +++A+++GH+
Sbjct: 235 QDVLKKPMVGRKVCILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDSQMDKAKEHGHS 291
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A+ K ++L HFS R+K + R +A
Sbjct: 292 TPQMAATFAKLCRAKRLVLTHFSQRYKPTALAREGEA 328
>gi|340624205|ref|YP_004742658.1| ribonuclease Z [Methanococcus maripaludis X1]
gi|339904473|gb|AEK19915.1| ribonuclease Z [Methanococcus maripaludis X1]
Length = 308
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 43/252 (17%)
Query: 43 FDIGRCPSR--------ALSQNFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G R + N +FI+H H DH+ GLP +A +G R KP I P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQG--RKKPLNIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ + +E + V +N + E + V ++ H + + YV
Sbjct: 91 AETVKMIEHILGVGYHSIDYPINVHEISSKTPERIISTNNYEVFSYPVVHSVPALAYVFR 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKS------SGTEITYT-VTTPE-----VAFTGDT 194
VK+ K + LG+ G ++K+LK +G IT VT P V ++GDT
Sbjct: 151 QVKKPRMDLEKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGICVGYSGDT 210
Query: 195 M-----SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
+ ++F+ + L+ L+ E+T+ D T + A++ H+ ++ + A+
Sbjct: 211 IPLTEFAEFLKE------LKCNTLIHEATF--DKTMDKNAKETLHSTATDALNIAKLSGV 262
Query: 250 KAILLIHFSARH 261
+LL H SAR+
Sbjct: 263 STVLLTHISARY 274
>gi|304314168|ref|YP_003849315.1| ribonuclease Z [Methanothermobacter marburgensis str. Marburg]
gi|302587627|gb|ADL58002.1| predicted ribonuclease Z [Methanothermobacter marburgensis str.
Marburg]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEV-HRRMDHSELNH 115
+FI+H H DHI G+P + + G R +P I P I E E + ++ + +D H
Sbjct: 56 MFITHLHGDHILGIPGMIQSMGFRGRQEPLEIYGPPGIHELHESIMKLGYFTLDFDIHVH 115
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ----KLKQEYLGL-PGDEIK 170
+ G V EE +D + + H + + Y K+ + K LGL PG
Sbjct: 116 EVKGGTVLEE----EDYRITSAPASHSVFNLAYCFEEKKRPRFLREKAIELGLKPGPAFG 171
Query: 171 KL-KSSGTEITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLR-ARILVMES 217
KL + + + PE + ++GDT E+ ID+ R A +L+ ES
Sbjct: 172 KLHRGIPVRVGDRIIKPEEVLGSPRRGVKICYSGDTRP----CESVIDLAREADLLIHES 227
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
T+ ++ + ++A + GH+ E E A + ++L H S R+K E+
Sbjct: 228 TF--EAGSEDKAAESGHSTAREAAEVAASACVRRLILTHLSTRYKRTEV 274
>gi|423368195|ref|ZP_17345627.1| ribonuclease Z [Bacillus cereus VD142]
gi|401081413|gb|EJP89689.1| ribonuclease Z [Bacillus cereus VD142]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVSLLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|229047834|ref|ZP_04193414.1| Ribonuclease Z [Bacillus cereus AH676]
gi|228723626|gb|EEL74991.1| Ribonuclease Z [Bacillus cereus AH676]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSISTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|448543944|ref|ZP_21625405.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|448558521|ref|ZP_21633078.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
gi|445706086|gb|ELZ57973.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|445712273|gb|ELZ64055.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
Length = 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 106/265 (40%), Gaps = 45/265 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDRDASLAIHGPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
K +E L VH + ++ + G D V+AF T H S GY +
Sbjct: 93 GSKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVE 150
Query: 153 VKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTPE----VAFTGD 193
+ + K E LG+P G++++ + V P V +TGD
Sbjct: 151 DDRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGD 210
Query: 194 TMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
T ++ ++V R A +LV ++T+ D+ E+A+ H+ E A + +
Sbjct: 211 TRP----LDSTVEVARDADLLVHDATFTDEE--AERAKQTAHSTAREAARIARDADVRRF 264
Query: 253 LLIHFSARHKVDEIRRAVDAVPAPL 277
L H SAR+ D P+PL
Sbjct: 265 ALTHVSARYAAD---------PSPL 280
>gi|414084115|ref|YP_006992823.1| ribonuclease Z [Carnobacterium maltaromaticum LMA28]
gi|412997699|emb|CCO11508.1| ribonuclease Z [Carnobacterium maltaromaticum LMA28]
Length = 312
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P ++ P I+E V +V + L +
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDEPLVVYGPKGIREYVLTSLKV----SGTHLKYA 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYL---GLP-GDE 168
L ++ EE + +D V + H IQS GY + + L+ E L G+P G
Sbjct: 115 LSFHEITEEGVLFQDQKFKVTCLELDHGIQSFGYRIEESDHQGMLQVEALKAVGVPFGPM 174
Query: 169 IKKLKSSGTEITYTVTTPEVA----FTGDTMSDFIV-------DEANIDVL--RARILVM 215
++K+ T T+ +V F G+ IV N +L A +LV
Sbjct: 175 YGRIKNGET---VTLENGQVIDGRDFVGEDQKGRIVTILGDTRKHPNSVLLAQNADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ D + ARDY H+ + E A++ K +LL H SAR+
Sbjct: 232 ESTF--DGEDRKIARDYHHSTSLDAAEVAKEANAKRLLLTHISARY 275
>gi|227891089|ref|ZP_04008894.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
gi|227866963|gb|EEJ74384.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
Length = 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ K
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAK 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDAEV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|296109876|ref|YP_003616825.1| ribonuclease Z [methanocaldococcus infernus ME]
gi|295434690|gb|ADG13861.1| ribonuclease Z [Methanocaldococcus infernus ME]
Length = 309
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI G+P + + R + I P IKE VE E+
Sbjct: 57 IFITHLHGDHILGIPGIIQSLSFMGRTQKLEIYGPKGIKEIVEMAKNFGYNCIEYEVEVK 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLP-GDEIKK 171
+ + + KD A+ T H I S Y+ +K+ K + LG+ G ++KK
Sbjct: 117 EIKKNKEVKILEEKDFCFYAYPTKHYIPSYAYIFKEIKKPRLDINKAKELGIKVGPDLKK 176
Query: 172 LKSS--GTEITYTVTTPE-----------VAFTGDTM--SDFIVDEANIDVLRARILVME 216
LK I PE VA++GDT+ DF + N+D +L+ E
Sbjct: 177 LKEGIPVKNIHGETIFPEQVLLPPKRGICVAYSGDTLPIEDFALFLKNLD---CSLLIHE 233
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+T+ DS+ A + H+ + + + + + ++L H SAR+ +E
Sbjct: 234 ATF--DSSEKSLAEETYHSTVEDAYRIFKLSQAEKLILTHISARYDKEE 280
>gi|377831397|ref|ZP_09814374.1| ribonuclease Z [Lactobacillus mucosae LM1]
gi|377554824|gb|EHT16526.1| ribonuclease Z [Lactobacillus mucosae LM1]
Length = 308
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP +++R P TI P IKE V+ +V S L++
Sbjct: 59 IFISHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVKTALKV----SESRLSYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEI 169
L V L E K V K H I GY V + +L+ E L +P I
Sbjct: 115 LKFVELRDDGEIFSDKTFTVYTKKLNHKIACFGYRVVEHDHPGELQVEKLRAAQVPSGPI 174
Query: 170 KKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
+G + + P+ +SD A I++ + A +L+ E T
Sbjct: 175 YGQLKAGKVVELPDGRVLDGHDFIGAPQKGRVITIISDTRHTPAAIELAKDADVLIHEGT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ D T + AR Y H+ + A+K K +LL H SAR+
Sbjct: 235 FAKDET--KMARSYYHSTSGQAAMTAKKAHAKKLLLTHISARY 275
>gi|206971168|ref|ZP_03232119.1| ribonuclease Z [Bacillus cereus AH1134]
gi|229081399|ref|ZP_04213902.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|229180422|ref|ZP_04307765.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|229192354|ref|ZP_04319318.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|365159074|ref|ZP_09355258.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412054|ref|ZP_17389174.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|423432161|ref|ZP_17409165.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|423437595|ref|ZP_17414576.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
gi|206733940|gb|EDZ51111.1| ribonuclease Z [Bacillus cereus AH1134]
gi|228591134|gb|EEK48989.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|228603169|gb|EEK60647.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|228702021|gb|EEL54504.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|363625590|gb|EHL76611.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104122|gb|EJQ12099.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|401116917|gb|EJQ24755.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|401120750|gb|EJQ28546.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|184155103|ref|YP_001843443.1| beta-lactamase superfamily hydrolase [Lactobacillus fermentum IFO
3956]
gi|254808643|sp|B2GBD1.1|RNZ_LACF3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|183226447|dbj|BAG26963.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus fermentum IFO 3956]
Length = 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK+ V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L +++ + + KD V A + H I S GY V +K++Q G+P
Sbjct: 115 LKFVELTGDGEVFKDQTFTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQA--GIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G +T + P+ VA GDT + D A A +L
Sbjct: 173 PLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTR---VTDNAVKLAKGADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T+ + + A +Y H+ + A+K + +LL H SAR+
Sbjct: 230 VHEATFAKNEQRL--AHNYYHSTSVQAATVAKKAGAQRLLLNHISARY 275
>gi|30022222|ref|NP_833853.1| ribonuclease Z [Bacillus cereus ATCC 14579]
gi|228922891|ref|ZP_04086189.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228960410|ref|ZP_04122062.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229111615|ref|ZP_04241166.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|229129421|ref|ZP_04258392.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|229146717|ref|ZP_04275083.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|229152342|ref|ZP_04280535.1| Ribonuclease Z [Bacillus cereus m1550]
gi|296504633|ref|YP_003666333.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|423582352|ref|ZP_17558463.1| ribonuclease Z [Bacillus cereus VD014]
gi|423585375|ref|ZP_17561462.1| ribonuclease Z [Bacillus cereus VD045]
gi|423630867|ref|ZP_17606614.1| ribonuclease Z [Bacillus cereus VD154]
gi|423635031|ref|ZP_17610684.1| ribonuclease Z [Bacillus cereus VD156]
gi|423640775|ref|ZP_17616393.1| ribonuclease Z [Bacillus cereus VD166]
gi|423650007|ref|ZP_17625577.1| ribonuclease Z [Bacillus cereus VD169]
gi|423657070|ref|ZP_17632369.1| ribonuclease Z [Bacillus cereus VD200]
gi|41017542|sp|Q818V3.1|RNZ_BACCR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|29897779|gb|AAP11054.1| Metal-dependent hydrolase [Bacillus cereus ATCC 14579]
gi|228631304|gb|EEK87940.1| Ribonuclease Z [Bacillus cereus m1550]
gi|228636737|gb|EEK93201.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|228654026|gb|EEL09893.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|228671997|gb|EEL27290.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|228799271|gb|EEM46236.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228836946|gb|EEM82289.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|296325685|gb|ADH08613.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|401213231|gb|EJR19972.1| ribonuclease Z [Bacillus cereus VD014]
gi|401234018|gb|EJR40504.1| ribonuclease Z [Bacillus cereus VD045]
gi|401264234|gb|EJR70346.1| ribonuclease Z [Bacillus cereus VD154]
gi|401279017|gb|EJR84947.1| ribonuclease Z [Bacillus cereus VD156]
gi|401279836|gb|EJR85758.1| ribonuclease Z [Bacillus cereus VD166]
gi|401283287|gb|EJR89184.1| ribonuclease Z [Bacillus cereus VD169]
gi|401289813|gb|EJR95517.1| ribonuclease Z [Bacillus cereus VD200]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|313123510|ref|YP_004033769.1| ribonuclease z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280073|gb|ADQ60792.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 309
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I EQ + R+ +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGI----EQFVKTSLRISKTKISYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
+ V L+ G + + V K H I S G+ V + KL E+ G
Sbjct: 115 IKFVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGP 173
Query: 168 EIKKLK-SSGTEITYTVTTPEVAFTGDTMSDFIV----DEANIDVLR-----ARILVMES 217
+ KLK E+ F G IV D + +R A +LV E+
Sbjct: 174 LLGKLKRGEHVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ D++ + ARDY H+ ++ E A + + L H SAR+
Sbjct: 234 TF--DASEGKLARDYYHSTCTQAAETAAACQVGHLYLTHVSARY 275
>gi|300778911|ref|ZP_07088769.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
gi|300504421|gb|EFK35561.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
Length = 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVH 105
+ +R N +FISH H DH GLP +A+ R L R P + P IK+ +E +F++
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRENPLHVYGPKGIKKMLETIFQIT 106
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
E+ + + D E+ + V H I GY+ K+K K +L +
Sbjct: 107 ETHRGFEVVYHELDKDYSEKIYEDNRIEVYTIPLDHRIYCNGYL---FKEKPKDRHLNM- 162
Query: 166 GDEIKKLK------------------SSG----TEITYTVTTPEVAFTGDTMSDFIVDEA 203
EI K S G EI P V++ SD E+
Sbjct: 163 -KEIAKYSEIETCDYHNIKAGKDFVLSDGYVLKNEILTVDPAPSVSYA--FCSDTRYLES 219
Query: 204 NIDVLR-ARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARH 261
I +++ +L EST++ D +++ DY GHT E A+K + ++L HFS R+
Sbjct: 220 VIPIIKNVTVLYHESTFLHD---LKEMADYTGHTTALEAATIAQKAQVGKLILGHFSNRY 276
>gi|228954426|ref|ZP_04116452.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|423426277|ref|ZP_17403308.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|423503170|ref|ZP_17479762.1| ribonuclease Z [Bacillus cereus HD73]
gi|449091100|ref|YP_007423541.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228805358|gb|EEM51951.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|401111024|gb|EJQ18923.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|402459391|gb|EJV91128.1| ribonuclease Z [Bacillus cereus HD73]
gi|449024857|gb|AGE80020.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VERDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|260663645|ref|ZP_05864534.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
gi|260551871|gb|EEX24986.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
Length = 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++++R P TI P IK+ V+ +V S L++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKV----SESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
L ++ + + KD V A + H I S GY V +K++Q G+P
Sbjct: 115 LKFEELTGDGEVFKDQTFTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQA--GIPSG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
+ G +T + P+ VA GDT + D A A +L
Sbjct: 173 PLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTR---VTDNAVKLAKGADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T+ + + A +Y H+ ++ A+K + +LL H SAR+
Sbjct: 230 VHEATFAKNEQRL--AHNYYHSTSAQAATVAKKAGAQRLLLNHISARY 275
>gi|350578482|ref|XP_003121492.3| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Sus scrofa]
Length = 363
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKEFAHANKVDSPPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGTEI--TYTVTTP 186
F+ +H I S G+ V K QKLK LG+P G KLK+ + + + +P
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVIISP 235
Query: 187 E-----------VAFTGDTMSDFIVDEANIDV-LRARILVMESTYVDDSTTVEQARDYGH 234
+ + GD +VD+ + + A +L+ E+T D T +++A+++GH
Sbjct: 236 QDVLKKPIVGRKICILGDCSG--VVDDGGVKLCFEADLLIHEATL--DDTQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ + K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|402759604|ref|ZP_10861860.1| ribonuclease Z [Acinetobacter sp. NCTC 7422]
Length = 321
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R P TII P ++++Q EV ++ L ++L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTAPLTIIAP----KEIQQWIEVTAQLTDLHLPYSLN 116
Query: 119 GLDVGEEFCMRK---DLFVKAFKTYHVIQSQGYVVYS--VKQKLKQE---YLGLPGDEIK 170
+DV E +++ +L ++A H + S + + + ++KL + L +P +
Sbjct: 117 FIDVNEATQIQQITDELSIQAHPLIHRVPSFAFSIIARYTQKKLDTQALVQLSVPKGKAW 176
Query: 171 KLKSSGTEITYT-VTTPEVAFT------------GDTMSDFIVDEANIDVLRARILVMES 217
G +I + T V FT GD ++ +A D A++L+ ES
Sbjct: 177 GDLQQGLDIQFNGQTLKAVDFTQLQIQNAHAIIGGDNDQPELLAQACQD---AQLLIHES 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
TY + + H+ + E+A++ ++L HFS RH+ + ++A+
Sbjct: 234 TYTQAALD-KVGSGPMHSSAKMVAEFAQQQGLSNLILTHFSPRHQDNAGQQAI 285
>gi|150398775|ref|YP_001322542.1| ribonuclease Z [Methanococcus vannielii SB]
gi|166991486|sp|A6UN58.1|RNZ_METVS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150011478|gb|ABR53930.1| ribonuclease Z [Methanococcus vannielii SB]
Length = 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
Query: 56 NFLFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSE 112
N +FISH H DHI G+P +A +G R KP I P KE ++ + ++
Sbjct: 54 NNIFISHLHGDHILGIPGLLQSIAFQG--RKKPLNIYGPPETKEMIKNMLKIGYHSIDYP 111
Query: 113 LNHTLVGLDVGEEFCMRKDLF------VKAFKTYHVIQSQGYVVYSVKQKL----KQEYL 162
+N ++ E + V F H + S Y+ +K+ K E L
Sbjct: 112 INIHEASIESPEMIIASSNNSNGNNYEVYTFPVKHSVPSISYLFKQIKKPQMDIKKAETL 171
Query: 163 GLP-GDEIKKLK-------SSGTEIT-YTVTTPE-----VAFTGDTMSDFIVDEAN--ID 206
G+ G ++KKLK +G IT VT P + ++GDT+ +DE +
Sbjct: 172 GIEIGPDLKKLKDGFSIQLKNGKVITPKDVTIPPKKGYCIGYSGDTIP---IDEFGKFLK 228
Query: 207 VLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+L+ E+T+ DS+ + A D H+ + + ++ EK + ++ H SAR+
Sbjct: 229 YHGCNVLIHEATF--DSSMQKNAVDTMHSTILDALDILEKSGARTLIATHISARY 281
>gi|417788529|ref|ZP_12436212.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
gi|334308706|gb|EGL99692.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISNFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ +
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAR 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A+K K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYYHSTCVQAATLAKKVGVKQLLLTHISARY 277
>gi|15605069|ref|NP_219853.1| ribonuclease Z [Chlamydia trachomatis D/UW-3/CX]
gi|76789072|ref|YP_328158.1| ribonuclease Z [Chlamydia trachomatis A/HAR-13]
gi|237802771|ref|YP_002887965.1| ribonuclease Z [Chlamydia trachomatis B/Jali20/OT]
gi|237804693|ref|YP_002888847.1| ribonuclease Z [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311151|ref|ZP_05353721.1| ribonuclease Z [Chlamydia trachomatis 6276]
gi|255317452|ref|ZP_05358698.1| ribonuclease Z [Chlamydia trachomatis 6276s]
gi|376282352|ref|YP_005156178.1| Ribonuclease Z [Chlamydia trachomatis A2497]
gi|385239860|ref|YP_005807702.1| ribonuclease Z [Chlamydia trachomatis G/9768]
gi|385240783|ref|YP_005808624.1| ribonuclease Z [Chlamydia trachomatis G/11222]
gi|385242636|ref|YP_005810475.1| ribonuclease Z [Chlamydia trachomatis G/9301]
gi|385243553|ref|YP_005811399.1| Ribonuclease Z [Chlamydia trachomatis D-EC]
gi|385244433|ref|YP_005812277.1| Ribonuclease Z [Chlamydia trachomatis D-LC]
gi|385246246|ref|YP_005815068.1| ribonuclease Z [Chlamydia trachomatis G/11074]
gi|385270030|ref|YP_005813190.1| Ribonuclease Z [Chlamydia trachomatis A2497]
gi|41017523|sp|O84350.1|RNZ_CHLTR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123606951|sp|Q3KM12.1|RNZ_CHLTA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|3328767|gb|AAC67941.1| Sulphohydrolase/Glycosulfatase [Chlamydia trachomatis D/UW-3/CX]
gi|76167602|gb|AAX50610.1| metal-dependent hydrolase [Chlamydia trachomatis A/HAR-13]
gi|231272993|emb|CAX09905.1| Ribonuclease Z [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274005|emb|CAX10798.1| Ribonuclease Z [Chlamydia trachomatis B/Jali20/OT]
gi|296435865|gb|ADH18039.1| ribonuclease Z [Chlamydia trachomatis G/9768]
gi|296436791|gb|ADH18961.1| ribonuclease Z [Chlamydia trachomatis G/11222]
gi|296437725|gb|ADH19886.1| ribonuclease Z [Chlamydia trachomatis G/11074]
gi|297140224|gb|ADH96982.1| ribonuclease Z [Chlamydia trachomatis G/9301]
gi|297748476|gb|ADI51022.1| Ribonuclease Z [Chlamydia trachomatis D-EC]
gi|297749356|gb|ADI52034.1| Ribonuclease Z [Chlamydia trachomatis D-LC]
gi|347975170|gb|AEP35191.1| Ribonuclease Z [Chlamydia trachomatis A2497]
gi|371908382|emb|CAX09011.1| Ribonuclease Z [Chlamydia trachomatis A2497]
gi|438690272|emb|CCP49529.1| ribonuclease Z [Chlamydia trachomatis A/7249]
gi|438691356|emb|CCP48630.1| ribonuclease Z [Chlamydia trachomatis A/5291]
gi|438692729|emb|CCP47731.1| ribonuclease Z [Chlamydia trachomatis A/363]
gi|440525263|emb|CCP50514.1| ribonuclease Z [Chlamydia trachomatis K/SotonK1]
gi|440527939|emb|CCP53423.1| ribonuclease Z [Chlamydia trachomatis D/SotonD5]
gi|440528830|emb|CCP54314.1| ribonuclease Z [Chlamydia trachomatis D/SotonD6]
gi|440532404|emb|CCP57914.1| ribonuclease Z [Chlamydia trachomatis G/SotonG1]
gi|440533297|emb|CCP58807.1| ribonuclease Z [Chlamydia trachomatis Ia/SotonIa1]
gi|440534191|emb|CCP59701.1| ribonuclease Z [Chlamydia trachomatis Ia/SotonIa3]
Length = 304
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 116/258 (44%), Gaps = 47/258 (18%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GL + L R + P P+ K+ + R+ +S + H
Sbjct: 59 IFISHFHGDHCLGLGSMLMRLNLDRVLHPIHCYYPASGKKYFD-------RLRYSTIYHE 111
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY--------HVIQSQGYVVYS------VKQKLKQEYL 162
+ + E + ++ V+ F + H++ + G+ + + +K+K
Sbjct: 112 TIKVI---EHPIDREGIVEDFGNFRIESRQLDHLVDTLGWRITEPDTTKFIPEKIKAA-- 166
Query: 163 GLPGDEIKKLKSSGT-----------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-A 210
GL G +++L + G +++YT +A D++ +A +D+ R A
Sbjct: 167 GLKGPIMQELINKGQVKVNDTIVHLDDVSYTRKGDSIAVVADSLPC----QAIVDLARNA 222
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE--IRR 268
RIL+ ESTY+++ + + A+ + H + E A++ E + ++L HFSAR+ E ++
Sbjct: 223 RILLCESTYLEEHSHL--AKSHYHMTAKQAAEQAKRAEVQQLILTHFSARYNTTEEFVQE 280
Query: 269 AVDAVPAPLAGRVFALTE 286
A + P A F E
Sbjct: 281 AGEIFPNVFAAEEFCSYE 298
>gi|341820573|emb|CCC56855.1| ribonuclease Z [Weissella thailandensis fsh4-2]
Length = 343
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 44/252 (17%)
Query: 43 FDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSC 93
FD+G R + ++ + FI+H H DHI GLP +++R + TI P
Sbjct: 53 FDVGEGTQRQMLRSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDALTIYGPKG 112
Query: 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDV---GEEFCMRKDLFVKAFKTYHVIQSQGYVV 150
I+ Q EV R+ + L + + +++ G + + V A H I S GY V
Sbjct: 113 IR----QFVEVSLRVSQTHLTYPIKFVELPETGGDVLQTEKFTVSALPLDHRITSFGYRV 168
Query: 151 YS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT----------VTTPE----VA 189
+ ++L++ L +P + G ++T + P+ VA
Sbjct: 169 TEHAHPGELLVERLRE--LNVPAGPLYGQLKQGKDVTLADGRTIHGADVIGDPQPGRCVA 226
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
GDT D A +LV ESTY +QAR++ H + A++ +
Sbjct: 227 IMGDTRK---TDNTMTLARNADVLVHESTYGKGEG--KQARNHFHATSVQAATIADQAQV 281
Query: 250 KAILLIHFSARH 261
+LL H SAR+
Sbjct: 282 GRLLLTHISARY 293
>gi|166154558|ref|YP_001654676.1| ribonuclease Z [Chlamydia trachomatis 434/Bu]
gi|166155433|ref|YP_001653688.1| ribonuclease Z [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335821|ref|ZP_07224065.1| ribonuclease Z [Chlamydia trachomatis L2tet1]
gi|339626016|ref|YP_004717495.1| ribonuclease Z [Chlamydia trachomatis L2c]
gi|254808620|sp|B0B7R5.1|RNZ_CHLT2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808621|sp|B0BBY0.1|RNZ_CHLTB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|165930546|emb|CAP04041.1| Ribonuclease Z [Chlamydia trachomatis 434/Bu]
gi|165931421|emb|CAP06995.1| Ribonuclease Z [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|339461096|gb|AEJ77599.1| ribonuclease Z [Chlamydia trachomatis L2c]
gi|440526150|emb|CCP51634.1| ribonuclease Z [Chlamydia trachomatis L2b/8200/07]
gi|440535975|emb|CCP61488.1| ribonuclease Z [Chlamydia trachomatis L2b/795]
gi|440536867|emb|CCP62381.1| ribonuclease Z [Chlamydia trachomatis L1/440/LN]
gi|440537757|emb|CCP63271.1| ribonuclease Z [Chlamydia trachomatis L1/1322/p2]
gi|440538647|emb|CCP64161.1| ribonuclease Z [Chlamydia trachomatis L1/115]
gi|440539536|emb|CCP65050.1| ribonuclease Z [Chlamydia trachomatis L1/224]
gi|440540427|emb|CCP65941.1| ribonuclease Z [Chlamydia trachomatis L2/25667R]
gi|440541316|emb|CCP66830.1| ribonuclease Z [Chlamydia trachomatis L3/404/LN]
gi|440542203|emb|CCP67717.1| ribonuclease Z [Chlamydia trachomatis L2b/UCH-2]
gi|440543094|emb|CCP68608.1| ribonuclease Z [Chlamydia trachomatis L2b/Canada2]
gi|440543985|emb|CCP69499.1| ribonuclease Z [Chlamydia trachomatis L2b/LST]
gi|440544875|emb|CCP70389.1| ribonuclease Z [Chlamydia trachomatis L2b/Ams1]
gi|440545765|emb|CCP71279.1| ribonuclease Z [Chlamydia trachomatis L2b/CV204]
gi|440914027|emb|CCP90444.1| ribonuclease Z [Chlamydia trachomatis L2b/Ams2]
gi|440914917|emb|CCP91334.1| ribonuclease Z [Chlamydia trachomatis L2b/Ams3]
gi|440915809|emb|CCP92226.1| ribonuclease Z [Chlamydia trachomatis L2b/Canada1]
gi|440916703|emb|CCP93120.1| ribonuclease Z [Chlamydia trachomatis L2b/Ams4]
gi|440917593|emb|CCP94010.1| ribonuclease Z [Chlamydia trachomatis L2b/Ams5]
Length = 304
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 39/254 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GL + L R+ P P+ K+ + R+ +S + H
Sbjct: 59 IFISHFHGDHCLGLGSMLMRLNLDRVSHPIHCYYPASGKKYFD-------RLRYSTIYHE 111
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY--------HVIQSQGYVVYS------VKQKLKQEYL 162
+ + E + ++ V+ F + H++ + G+ + + +K+K
Sbjct: 112 TIKVI---EHPIDREGIVEDFGNFRIESRQLDHLVDTLGWRITEPDTTKFIPEKIKAA-- 166
Query: 163 GLPGDEIKKLKSSG-TEITYTVT-TPEVAFT--GDTMS---DFIVDEANIDVLR-ARILV 214
GL G +++L + G ++ T+ +V++T GD+++ D + +A +D+ R ARIL+
Sbjct: 167 GLKGPIMQELINKGRVKVNDTIVHLDDVSYTRKGDSIAVVADSLPCQAIVDLARNARILL 226
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE--IRRAVDA 272
ESTY+++ + + A+ + H + E A++ E + ++L HFSAR+ E ++ A +
Sbjct: 227 CESTYLEEHSHL--AKSHYHMTAKQAAEQAKRAEVQQLILTHFSARYNTTEEFVQEAGEI 284
Query: 273 VPAPLAGRVFALTE 286
P A F E
Sbjct: 285 FPNVFAAEEFCSYE 298
>gi|374335971|ref|YP_005092658.1| beta-lactamase superfamily hydrolase [Oceanimonas sp. GK1]
gi|372985658|gb|AEY01908.1| beta-lactamase superfamily hydrolase [Oceanimonas sp. GK1]
Length = 322
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 33/227 (14%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GLP +A+ GL R P TI+ P+ ++ +EQ + + + EL V
Sbjct: 60 ITHLHGDHCYGLPGLLASAGLNGRTAPLTIVGPAGLQAWIEQTAAISQLQLNFELRFADV 119
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQS--QGYVVYSVKQKLKQEYL---GLPGDEIKKLK 173
+ + + + A H + S G+ + +L L G+P +
Sbjct: 120 NSLISRPLAL-EGFDITATALSHRVPSFAYGFTETHLAGRLDTHRLLADGVPAGPLWGKL 178
Query: 174 SSGTEIT-----------YTVTTP---EVAFTGDTMSDFIVDEANIDVLRARILVMESTY 219
G +T Y ++ P +V GD + ++ +A V A +LV E+TY
Sbjct: 179 HRGETVTLNDGRVLAGRDYQLSPPRPRKVVIGGDNDNPGLLAQA---VQGADVLVHEATY 235
Query: 220 VDDSTTVEQARDYG----HTHLSEIVEYAEKFENKAILLIHFSARHK 262
T+E A G H+ + + ++AE+ ++L HFS R++
Sbjct: 236 -----TLEVANKVGPEPQHSSAAAVAQFAEQAGLPNLVLTHFSPRYR 277
>gi|398794833|ref|ZP_10554827.1| ribonuclease Z [Pantoea sp. YR343]
gi|398207906|gb|EJM94648.1| ribonuclease Z [Pantoea sp. YR343]
Length = 303
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 46/233 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRR-----MDHS 111
+FI+H H DHI GLP + +R + + P TI P I++ +E + ++
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPKGIRQFIETALSLSGSYTSYPLEIV 117
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGL 164
E+ LV LD GE + V A+ HVI+ GY + + +LK E G+
Sbjct: 118 EIEAGLV-LDDGE-------VRVTAWPMNHVIECYGYRIEQHDKPGFLDAPRLKAE--GV 167
Query: 165 P-GDEIKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDE--ANIDVL 208
P G + LK+ +G + T +V A GDT + + AN DV
Sbjct: 168 PRGPWYQDLKAGKRIQLEDGREINGADYLGPATKGKVLAIFGDTAPTEVALQLAANADV- 226
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+V E+T ++ E+A GH+ + E A++ K ++ HFS+R+
Sbjct: 227 ----MVHETTL--EAALAEKANGRGHSTTIQAAEVAKQSGAKRMIATHFSSRY 273
>gi|304404445|ref|ZP_07386106.1| ribonuclease Z [Paenibacillus curdlanolyticus YK9]
gi|304346252|gb|EFM12085.1| ribonuclease Z [Paenibacillus curdlanolyticus YK9]
Length = 308
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 61/276 (22%)
Query: 37 PSLDLA-FDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGL-YRMKPP 86
PSL + FD G L Q + +FI+H H DH+ GLP ++TR + P
Sbjct: 29 PSLSVWLFDAGEGTQHRLLQTPIKLNRIDRIFITHLHGDHVFGLPGLLSTRAYDGGVGPV 88
Query: 87 TIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF------VKAFKTY 140
TI P+ +++ VE LF+ L+ T +G D+ + +F V+A
Sbjct: 89 TIYGPAGLQQMVECLFQ---------LSGTYIGYDIQYVEAVEGVIFDDGNYRVEAAALE 139
Query: 141 HVIQSQGYVVYSVKQ-------KLKQ---------------EYLGLP-GDEIKKLKSSGT 177
H I GY V + KLK+ E + LP G EIK +G
Sbjct: 140 HRIPCFGYRVIESPRPGRLDAGKLKEAGVPFGPLYGKLKAGEDITLPDGREIKSSDVTGA 199
Query: 178 EITYTVTTPEVAFTGDTMSDFIVDEANIDVL--RARILVMESTYVDDSTTVEQARDYGHT 235
I + T GDT AN L A +LV E+T+ + E+A YGH+
Sbjct: 200 CIPGRIVT----ILGDTKPC-----ANAVRLAEHADLLVHEATFA--AGLEEKAELYGHS 248
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
+ E A++ + +++ HFS+R+++++ + VD
Sbjct: 249 TTVQAAEAAKRAGARKLVMTHFSSRYELEDAVQLVD 284
>gi|295098087|emb|CBK87177.1| RNAse Z [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 305
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 26/225 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P TI P+ I+E VE R+ S ++
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTL----RLSGSWTDYP 115
Query: 117 LVGLDVGEEFCMRK-DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDEI 169
L L++GE D V+A+ H ++ GY V + L PG
Sbjct: 116 LEVLEIGEGLVFDDGDYLVRAYPLNHPVECYGYRVEEHDKPGALNAAALQADGVKPGPLF 175
Query: 170 KKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVMEST 218
++LK G +T + P+ D + + + R ++V E+T
Sbjct: 176 QRLK-HGETVTLEDGRVINGQDYLAPPQPGKKLAIFGDTAPCPSALRLARGVDVMVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
++ E+A GH+ + + A + + +++ H S+R+ V
Sbjct: 235 L--EAAMEEKANSRGHSSTRQAAQLAREAGVRKLIVTHVSSRYDV 277
>gi|422858229|ref|ZP_16904879.1| ribonuclease Z [Streptococcus sanguinis SK1057]
gi|327461200|gb|EGF07533.1| ribonuclease Z [Streptococcus sanguinis SK1057]
Length = 309
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 42/247 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------IMETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDVLR 209
+P G K+K+ GT+I ++ P +A GDT + +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTSVSVRLAV---A 229
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEI 266
A +LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++
Sbjct: 230 ADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQM 287
Query: 267 RRAVDAV 273
RR AV
Sbjct: 288 RRDASAV 294
>gi|429091717|ref|ZP_19154379.1| Ribonuclease Z [Cronobacter dublinensis 1210]
gi|426743659|emb|CCJ80492.1| Ribonuclease Z [Cronobacter dublinensis 1210]
Length = 286
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P + P IKE +E R+ S ++
Sbjct: 41 IFITHLHGDHIFGLPGLLCSRSMAGCETPLDVYGPQGIKEFIETAL----RLSGSWTSYP 96
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDEI 169
L ++ + D F V AF H ++ GY + + + L PG
Sbjct: 97 LRIHEITAGTVLDDDAFTVTAFALTHPVECYGYRIEERDKPGTLDAAALKAAGVTPGPLF 156
Query: 170 KKLKSSGTEITYT----------VTTP----EVAFTGDTMSDFIVDEANIDVLRARILVM 215
++LK G +T ++ P ++A GDT DV ++V
Sbjct: 157 QQLKR-GETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTGPTAQAAALARDV---DLMVH 212
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ E+A GH+ + A + K +++ HFS+R+ + +R
Sbjct: 213 ETTL--EAAMAEKANGRGHSTTQQAATLAREAGAKRLVMTHFSSRYDAADCQR 263
>gi|384110060|ref|ZP_10010900.1| ribonuclease Z [Treponema sp. JC4]
gi|383868386|gb|EID84045.1| ribonuclease Z [Treponema sp. JC4]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 25/230 (10%)
Query: 56 NFLFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +F+SH H DH+ GLP + + + + R +P I P IKE + E RR+ +N
Sbjct: 59 NAIFVSHTHADHVTGLPGILMLSAQVDRTEPLYIYGPPKIKEYI----ETSRRVLDMYIN 114
Query: 115 HTLVGLDVGEEFCMR--KDLFVKAFKTYHVIQSQGYVVYSVKQKLK-----QEYLGLP-- 165
+ +V ++ + +D +++AF H GY + + + + LG+P
Sbjct: 115 YPIVVKEITAPCVVHGGEDFYIRAFPLDHTKTCVGYTLEELDRPGEFNPDTARSLGVPCG 174
Query: 166 --------GDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRAR-ILVME 216
GDE++ S + + P ++D + + D +R +LV E
Sbjct: 175 PLWGKLQKGDEVQAEDGSIVKPEQVMGKPRSGRKFSFVTDTLYKPSIADEVRGSDLLVCE 234
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ + ++QA++ H + A + + +IH+S R+ E+
Sbjct: 235 GMF--EHALLDQAKEKKHMTAVQAATIARDANVRRMCMIHYSPRYTDKEL 282
>gi|385840643|ref|YP_005863967.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
gi|300214764|gb|ADJ79180.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
Length = 317
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ K
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAK 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|222153269|ref|YP_002562446.1| ribonuclease Z [Streptococcus uberis 0140J]
gi|254808674|sp|B9DUP5.1|RNZ_STRU0 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222114082|emb|CAR42499.1| ribonuclease Z [Streptococcus uberis 0140J]
Length = 309
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V+ + R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQASEEQTDIEIFGPLGIKSFVQNSLAISGTRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H D+G+ M D F V A K H I GY V ++ L E L G+P G
Sbjct: 119 FHEFTDKDMGK--IMETDKFLVYAEKLAHTIFCMGYRVVQKDLEGTLDAEALKKAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
K+K+ G +I ++ P+ + GDT + L A +L
Sbjct: 177 PLFGKIKNGQDIVLDDGRQILAKDYISEPKKGKVITILGDTRK---TPASQRLALNADVL 233
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
V ESTY + AR++GH+ + + A+ K +LL H SAR
Sbjct: 234 VHESTYGKGDDRI--ARNHGHSTNMQAAQIAKDANVKRLLLNHVSAR 278
>gi|257887532|ref|ZP_05667185.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|431034937|ref|ZP_19491814.1| ribonuclease Z [Enterococcus faecium E1590]
gi|431761784|ref|ZP_19550346.1| ribonuclease Z [Enterococcus faecium E3548]
gi|257823586|gb|EEV50518.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|430563652|gb|ELB02861.1| ribonuclease Z [Enterococcus faecium E1590]
gi|430624476|gb|ELB61126.1| ribonuclease Z [Enterococcus faecium E3548]
Length = 313
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLPG-- 166
+++ E + D V A K H I S GY V K LK+ LG+P
Sbjct: 116 KFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 167 -------DEIKKLKSSGTEITYTVTTPE-----VAFTGDTMS--DFIVDEANIDVLRARI 212
E +LK T P V GDT + +V N D I
Sbjct: 174 LYGKLKQGETIQLKDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|308188524|ref|YP_003932655.1| ribonuclease Z [Pantoea vagans C9-1]
gi|308059034|gb|ADO11206.1| ribonuclease Z [Pantoea vagans C9-1]
Length = 303
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K VE + LN
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPRGLKTFVETALSISGSYTDYPLN-- 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLP-GD 167
+V ++ G + + F + A+ H ++ GY + ++LK E G+P G
Sbjct: 116 IVEIEAG--WTLDDGEFRISAWPLSHPVECFGYRIEQHDKPGLLDAERLKAE--GVPRGP 171
Query: 168 EIKKLKSSGTEIT------------YTVTTP--EVAFTGDTMSDFIVDEANIDVLRARIL 213
++LK G +T TP ++A GDT + + +V ++
Sbjct: 172 WFQQLK-QGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTEVALQLAAEV---DLM 227
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T ++ VE+A GH+ + E A++ K ++ HFS+R+ ++ R
Sbjct: 228 VHETTL--EAAMVEKANGRGHSTTLQAAEVAKRAGAKRMIATHFSSRYLAKDMSR 280
>gi|75759266|ref|ZP_00739366.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74493272|gb|EAO56388.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 318
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 70 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 125
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 126 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 183
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 184 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 243
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 244 ATFAAEDE--QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 289
>gi|385804841|ref|YP_005841241.1| ribonuclease Z [Haloquadratum walsbyi C23]
gi|339730333|emb|CCC41662.1| ribonuclease Z [Haloquadratum walsbyi C23]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 118/283 (41%), Gaps = 49/283 (17%)
Query: 41 LAFDIGRCPSR-------ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R S + +F++H H DHI G+P + T R I P
Sbjct: 31 LLFDCGEGTQRQMMRFGTGFSLSHIFVTHLHGDHILGIPGLIQTLDFNDRTDALAIHGPP 90
Query: 93 CIKEDVEQLFEVHR-----RMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQ 146
K + L E ++ E+ V +D EE+ +R +F+T H + S
Sbjct: 91 GSKPHLRHLVETAGYRPGYPINIREIRPGTVAVDT-EEYIIR------SFETSHRGVTSI 143
Query: 147 GYVVYSVKQKL-----KQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE---------- 187
GY + +K + E LG+P G + +L G + ++ PE
Sbjct: 144 GYALIESDRKGRFNRDRAESLGVPVGPKFGRLH-DGESVKLADGSIVHPEQVVGDSRPGR 202
Query: 188 -VAFTGDTM-SDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
V +TGDT ++ V+ AN A +LV ++T+ D + +A+ GH+ E + A
Sbjct: 203 RVVYTGDTRPTETTVEAAN----NADLLVHDATFAADRAS--RAKQTGHSTAQEAAQIAT 256
Query: 246 KFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288
+ + + + L H S+R+ D DA A + F +G+
Sbjct: 257 RADARRLALTHVSSRYAGDVTPLESDATAAFDGQQAFVPDDGY 299
>gi|313127680|ref|YP_004037950.1| rnase z [Halogeometricum borinquense DSM 11551]
gi|448286791|ref|ZP_21478010.1| ribonuclease Z [Halogeometricum borinquense DSM 11551]
gi|312294045|gb|ADQ68505.1| RNAse Z [Halogeometricum borinquense DSM 11551]
gi|445573330|gb|ELY27852.1| ribonuclease Z [Halogeometricum borinquense DSM 11551]
Length = 311
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 41/255 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DH+ G+P + T R +P I P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFTVSHLFVTHLHGDHVLGIPGLIQTWDFNDREEPIAIHAPP 92
Query: 93 CIKEDVEQLFEVHRRMDHSELN-HTLVGLDVGEEFCMRKDLF-VKAFKTYH-VIQSQGYV 149
K ++ L +N H + +V + D + V+ F+T H ++S G+
Sbjct: 93 GSKRHLQSLVNAGGYRPSFPVNIHEVKPGNV----ALSGDSYEVRTFETDHRNVRSMGFA 148
Query: 150 VYSVKQ-----KLKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAF 190
+ + + K E LG+P G + +L + E+ TV PE + +
Sbjct: 149 LVEDDRPGRFNREKAEALGVPVGPDFGRLHEGESVELEDGTVIHPEQVVGDPRPGRRLVY 208
Query: 191 TGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT VD A +DV+ +L+ ++T+ +D E+A GH+ E E A +
Sbjct: 209 TGDTRP---VD-ATVDVVDEPDLLIHDATFAEDR--AERAHGTGHSTGREAAEIANRAGA 262
Query: 250 KAILLIHFSARHKVD 264
+ + L H S+R+ D
Sbjct: 263 RRLALTHISSRYAGD 277
>gi|377576560|ref|ZP_09805544.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
gi|377542592|dbj|GAB50709.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
Length = 304
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 34/229 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DHI GLP + +R + + P T+ P+ I++ +E ++ L
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMAGNENPLTVYGPAGIRQFIEMALQLSGSWTGFPLE 116
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
+V + GE FC ++ V A+ H ++ GY + + +LK E + PG
Sbjct: 117 --IVEITAGEVFC-DEEFRVTAYPLTHPVECYGYRIEQHDRPGALDASRLKAEGI-TPGP 172
Query: 168 EIKKLKS------------SGTE-ITYTVTTPEVAFTGDT--MSDFIVDEANIDVLRARI 212
++LK +G + + +A GDT S + + +DV
Sbjct: 173 LFQQLKRGESVMLDDGRMINGQDYLGPARKGKTLAIFGDTGPTSAALTLASGVDV----- 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+V E+T ++ E+A GH+ + E A +++ HFS+R+
Sbjct: 228 MVHETTL--EAAMAEKANSRGHSTTVQAAEVARAAGVGRLVITHFSSRY 274
>gi|171779659|ref|ZP_02920615.1| hypothetical protein STRINF_01496 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281761|gb|EDT47195.1| ribonuclease Z [Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
Length = 309
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T I P I+ V + R+
Sbjct: 59 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLDIYGPVGIRSYVLNSLRLSGARLPYRIH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L E L G
Sbjct: 119 FHEFDENSLGK------VMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+KS GT+I ++ P+ + D +A++ + L A I
Sbjct: 173 VPFGPLFGKIKSGQDVVLEDGTKIIAKDYISAPKKGKVITVLGDTRKTDASVRLGLGADI 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR +GH+ ++ + A++ K +LL H SAR
Sbjct: 233 LVHESTYGKGDERI--ARKHGHSTGTQAAQIAKEASAKCLLLNHISAR 278
>gi|251796637|ref|YP_003011368.1| ribonuclease Z [Paenibacillus sp. JDR-2]
gi|247544263|gb|ACT01282.1| ribonuclease Z [Paenibacillus sp. JDR-2]
Length = 309
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 35/242 (14%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P + LF++H H DH G+P ++TR P + P I+E +E
Sbjct: 48 RTPLKLNKLEALFVTHLHGDHTYGIPGLLSTRSYVGGNTPLQLFGPPGIREMIETALT-- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKL 157
+ S L++ + +V E + + + V+A H + GY + + ++L
Sbjct: 106 --LSSSRLDYEITYHEVSEGVVYKTERYTVEALPLEHRVPCFGYRITECESPGKLNVERL 163
Query: 158 KQEYLGLPGDEIKKLKSSGTEITYTVTT----------PE----VAFTGDTMSDFIVDEA 203
+Q LG+P + G ++T T P+ + GDT D A
Sbjct: 164 QQ--LGVPAGPLFGRIKKGEDVTLPDGTLILAADVAGKPQCGRIITIAGDTKP---CDNA 218
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
A +LV E+T+ + E+A YGH+ E A K +++ HFS R V
Sbjct: 219 LRLAQNADLLVHEATFA--AGQEEKAHLYGHSTTVEAATTARDANAKRLIMTHFSTRF-V 275
Query: 264 DE 265
DE
Sbjct: 276 DE 277
>gi|423395556|ref|ZP_17372757.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
gi|401654967|gb|EJS72506.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
Length = 305
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 29/226 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLAMGVKPG 172
Query: 167 DEIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PVFKRLKDGEVVELENGTMLNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+ + +QA DY H+ + A + K ++L H S+R++
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|313205576|ref|YP_004044753.1| rnase z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386320451|ref|YP_006016613.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|416111414|ref|ZP_11592627.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|442315253|ref|YP_007356556.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
gi|312444892|gb|ADQ81247.1| RNAse Z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022694|gb|EFT35719.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|325334994|gb|ADZ11268.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|441484176|gb|AGC40862.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
Length = 304
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVH 105
R ++ N +FISH H DH GLP +A+ R L R P I P I+E +E +F +
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 106 RRMDHSE-LNHTLVGLDVGEEFCMRKDLFVKAFKT--YHVIQSQGYVVYSVKQKLKQEYL 162
E + H L G + + +D V+ F H I GY+ ++K K+ +L
Sbjct: 107 ETQRGFEVIYHELEG---NQSVKIYEDHKVEVFTIPLNHRIYCNGYL---FREKPKERHL 160
Query: 163 GLPGDEIKKLK----------SSGTEITYT----------VTTPEVAFTGDTMSDFIVDE 202
+ +EI K G + T + T P+ + + SD E
Sbjct: 161 NM--EEISKYPEIETCDYHNLKKGKDFTLSDGFVLKNEALTTPPQPSVSYAFCSDTRYLE 218
Query: 203 ANIDVLRA-RILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSAR 260
+ + +++ +L E+T++ D +++ DY GHT E A+K K ++L HFS R
Sbjct: 219 SIVPIIKGVDVLYHEATFLHD---LKEMADYTGHTTALEAATIAQKAGVKKLILGHFSNR 275
Query: 261 H 261
+
Sbjct: 276 Y 276
>gi|315038180|ref|YP_004031748.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325956632|ref|YP_004292044.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|385817519|ref|YP_005853909.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
gi|312276313|gb|ADQ58953.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325333197|gb|ADZ07105.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|327183457|gb|AEA31904.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
Length = 311
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 110/268 (41%), Gaps = 50/268 (18%)
Query: 32 TCIIFPSLD-----LAFDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATR 78
+C+ LD FD+G R R +FISH H DHI GLP ++TR
Sbjct: 20 SCVALKLLDELNGIWLFDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTR 79
Query: 79 GLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAF 137
+ P TI P+ I++ V ++ R +++++ + +++ E + +D K F
Sbjct: 80 SFQGDVGPLTIYGPAGIEQFVRTSLQISR----TKVSYPIKFVELSEPGLICED---KGF 132
Query: 138 KTY-----HVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIKKLKSSGTEITYTVTT-- 185
+ Y H I S G+ V K +P I G ++T T
Sbjct: 133 RVYTDRLDHRIPSFGFRVVEATHPGELLIDKLAKYNIPNGPILGQLKRGEQVTLADGTVL 192
Query: 186 -------PE-----VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG 233
PE V DT S + D A +LV EST+ D + + AR+Y
Sbjct: 193 NGKDFLGPEKPGRIVTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDES--KMARNYY 247
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARH 261
H+ + + A++ K + L H SAR+
Sbjct: 248 HSTSVQAAKIAKQENVKKLCLNHISARY 275
>gi|410461422|ref|ZP_11315073.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
gi|409925928|gb|EKN63128.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
Length = 316
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 30/230 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R TI P IKE V EV R+ + L +
Sbjct: 61 IFITHLHGDHVFGLPGLLGSRSFQDGTSLLTIYGPRGIKEYV----EVSLRISATHLKYP 116
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY--VVYSVKQKL---KQEYLGL-PGDEI 169
+ +++ + F V A K H I S GY V +K L K + LG+ PG
Sbjct: 117 IEIVEIEDGVIFEDHQFIVTAGKLEHGITSYGYRIVEKDLKGALEVDKLKKLGISPGPIY 176
Query: 170 KKLKSS-------GTEIT-YTVTTPE-----VAFTGDTMSDFIVDEANIDVLRARILVME 216
+K+K+ GT+I P+ +A GDT + E DV +LV E
Sbjct: 177 QKIKAGGEILLEDGTKINGVDFVGPDKPGRKLAILGDTRFNQKAIELADDV---DLLVHE 233
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+T+ + + A DY H+ A++ + KA++L H S+R++ ++I
Sbjct: 234 ATFGKEDEAI--AYDYFHSTTIGAARVAKEAKAKALVLTHISSRYQGNDI 281
>gi|29376245|ref|NP_815399.1| AtsA/ElaC family beta-lactamase [Enterococcus faecalis V583]
gi|227518882|ref|ZP_03948931.1| ribonuclease Z [Enterococcus faecalis TX0104]
gi|227553497|ref|ZP_03983546.1| ribonuclease Z [Enterococcus faecalis HH22]
gi|255975723|ref|ZP_05426309.1| ribonuclease Z [Enterococcus faecalis T2]
gi|256961805|ref|ZP_05565976.1| ribonuclease Z [Enterococcus faecalis Merz96]
gi|257090007|ref|ZP_05584368.1| ribonuclease Z [Enterococcus faecalis CH188]
gi|257419418|ref|ZP_05596412.1| ribonuclease Z [Enterococcus faecalis T11]
gi|293382868|ref|ZP_06628786.1| ribonuclease Z [Enterococcus faecalis R712]
gi|293389645|ref|ZP_06634100.1| ribonuclease Z [Enterococcus faecalis S613]
gi|307277941|ref|ZP_07559025.1| ribonuclease Z [Enterococcus faecalis TX0860]
gi|312903441|ref|ZP_07762621.1| ribonuclease Z [Enterococcus faecalis TX0635]
gi|312907661|ref|ZP_07766652.1| ribonuclease Z [Enterococcus faecalis DAPTO 512]
gi|312910278|ref|ZP_07769125.1| ribonuclease Z [Enterococcus faecalis DAPTO 516]
gi|384513368|ref|YP_005708461.1| ribonuclease Z [Enterococcus faecalis OG1RF]
gi|422689243|ref|ZP_16747355.1| ribonuclease Z [Enterococcus faecalis TX0630]
gi|422695104|ref|ZP_16753092.1| ribonuclease Z [Enterococcus faecalis TX4244]
gi|422701883|ref|ZP_16759723.1| ribonuclease Z [Enterococcus faecalis TX1342]
gi|422714495|ref|ZP_16771221.1| ribonuclease Z [Enterococcus faecalis TX0309A]
gi|422715753|ref|ZP_16772469.1| ribonuclease Z [Enterococcus faecalis TX0309B]
gi|422728780|ref|ZP_16785186.1| ribonuclease Z [Enterococcus faecalis TX0012]
gi|424676638|ref|ZP_18113509.1| ribonuclease Z [Enterococcus faecalis ERV103]
gi|424681546|ref|ZP_18118333.1| ribonuclease Z [Enterococcus faecalis ERV116]
gi|424683736|ref|ZP_18120486.1| ribonuclease Z [Enterococcus faecalis ERV129]
gi|424686360|ref|ZP_18123028.1| ribonuclease Z [Enterococcus faecalis ERV25]
gi|424690368|ref|ZP_18126903.1| ribonuclease Z [Enterococcus faecalis ERV31]
gi|424695461|ref|ZP_18131844.1| ribonuclease Z [Enterococcus faecalis ERV37]
gi|424696800|ref|ZP_18133141.1| ribonuclease Z [Enterococcus faecalis ERV41]
gi|424699814|ref|ZP_18136025.1| ribonuclease Z [Enterococcus faecalis ERV62]
gi|424703173|ref|ZP_18139307.1| ribonuclease Z [Enterococcus faecalis ERV63]
gi|424707330|ref|ZP_18143314.1| ribonuclease Z [Enterococcus faecalis ERV65]
gi|424717010|ref|ZP_18146308.1| ribonuclease Z [Enterococcus faecalis ERV68]
gi|424720588|ref|ZP_18149689.1| ribonuclease Z [Enterococcus faecalis ERV72]
gi|424724136|ref|ZP_18153085.1| ribonuclease Z [Enterococcus faecalis ERV73]
gi|424733727|ref|ZP_18162282.1| ribonuclease Z [Enterococcus faecalis ERV81]
gi|424743974|ref|ZP_18172279.1| ribonuclease Z [Enterococcus faecalis ERV85]
gi|424750518|ref|ZP_18178582.1| ribonuclease Z [Enterococcus faecalis ERV93]
gi|424761196|ref|ZP_18188778.1| ribonuclease Z [Enterococcus faecalis R508]
gi|430360644|ref|ZP_19426365.1| ribonuclease Z [Enterococcus faecalis OG1X]
gi|430370550|ref|ZP_19429075.1| ribonuclease Z [Enterococcus faecalis M7]
gi|41017546|sp|Q834G2.1|RNZ_ENTFA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|29343708|gb|AAO81469.1| metallo-beta-lactamase, AtsA/ElaC family [Enterococcus faecalis
V583]
gi|227073673|gb|EEI11636.1| ribonuclease Z [Enterococcus faecalis TX0104]
gi|227177367|gb|EEI58339.1| ribonuclease Z [Enterococcus faecalis HH22]
gi|255968595|gb|EET99217.1| ribonuclease Z [Enterococcus faecalis T2]
gi|256952301|gb|EEU68933.1| ribonuclease Z [Enterococcus faecalis Merz96]
gi|256998819|gb|EEU85339.1| ribonuclease Z [Enterococcus faecalis CH188]
gi|257161246|gb|EEU91206.1| ribonuclease Z [Enterococcus faecalis T11]
gi|291079533|gb|EFE16897.1| ribonuclease Z [Enterococcus faecalis R712]
gi|291081038|gb|EFE18001.1| ribonuclease Z [Enterococcus faecalis S613]
gi|295113079|emb|CBL31716.1| RNAse Z [Enterococcus sp. 7L76]
gi|306505338|gb|EFM74524.1| ribonuclease Z [Enterococcus faecalis TX0860]
gi|310626689|gb|EFQ09972.1| ribonuclease Z [Enterococcus faecalis DAPTO 512]
gi|310633317|gb|EFQ16600.1| ribonuclease Z [Enterococcus faecalis TX0635]
gi|311289551|gb|EFQ68107.1| ribonuclease Z [Enterococcus faecalis DAPTO 516]
gi|315147387|gb|EFT91403.1| ribonuclease Z [Enterococcus faecalis TX4244]
gi|315150410|gb|EFT94426.1| ribonuclease Z [Enterococcus faecalis TX0012]
gi|315169856|gb|EFU13873.1| ribonuclease Z [Enterococcus faecalis TX1342]
gi|315576098|gb|EFU88289.1| ribonuclease Z [Enterococcus faecalis TX0309B]
gi|315577751|gb|EFU89942.1| ribonuclease Z [Enterococcus faecalis TX0630]
gi|315580672|gb|EFU92863.1| ribonuclease Z [Enterococcus faecalis TX0309A]
gi|327535257|gb|AEA94091.1| ribonuclease Z [Enterococcus faecalis OG1RF]
gi|402351253|gb|EJU86145.1| ribonuclease Z [Enterococcus faecalis ERV116]
gi|402356258|gb|EJU90992.1| ribonuclease Z [Enterococcus faecalis ERV103]
gi|402364495|gb|EJU98931.1| ribonuclease Z [Enterococcus faecalis ERV31]
gi|402364734|gb|EJU99169.1| ribonuclease Z [Enterococcus faecalis ERV129]
gi|402367214|gb|EJV01555.1| ribonuclease Z [Enterococcus faecalis ERV25]
gi|402368399|gb|EJV02715.1| ribonuclease Z [Enterococcus faecalis ERV37]
gi|402375743|gb|EJV09723.1| ribonuclease Z [Enterococcus faecalis ERV62]
gi|402377129|gb|EJV11040.1| ribonuclease Z [Enterococcus faecalis ERV41]
gi|402384928|gb|EJV18469.1| ribonuclease Z [Enterococcus faecalis ERV65]
gi|402385178|gb|EJV18718.1| ribonuclease Z [Enterococcus faecalis ERV63]
gi|402386358|gb|EJV19864.1| ribonuclease Z [Enterococcus faecalis ERV68]
gi|402391057|gb|EJV24373.1| ribonuclease Z [Enterococcus faecalis ERV81]
gi|402393059|gb|EJV26289.1| ribonuclease Z [Enterococcus faecalis ERV72]
gi|402395870|gb|EJV28951.1| ribonuclease Z [Enterococcus faecalis ERV73]
gi|402399650|gb|EJV32516.1| ribonuclease Z [Enterococcus faecalis ERV85]
gi|402402459|gb|EJV35175.1| ribonuclease Z [Enterococcus faecalis R508]
gi|402406496|gb|EJV39046.1| ribonuclease Z [Enterococcus faecalis ERV93]
gi|429512759|gb|ELA02356.1| ribonuclease Z [Enterococcus faecalis OG1X]
gi|429515314|gb|ELA04830.1| ribonuclease Z [Enterococcus faecalis M7]
Length = 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 25/227 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P I P I + V+ R+ S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSL----RVSQSRLSYP 114
Query: 117 LVGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GD 167
L +++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 115 LKFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGP 174
Query: 168 EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV-------DEANIDVL--RARILVMEST 218
KLK T + AF G+ IV N L RA +LV EST
Sbjct: 175 LYGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHEST 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ + + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 235 F--NKHEAKMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|229549887|ref|ZP_04438612.1| ribonuclease Z [Enterococcus faecalis ATCC 29200]
gi|255972671|ref|ZP_05423257.1| ribonuclease Z [Enterococcus faecalis T1]
gi|312951623|ref|ZP_07770518.1| ribonuclease Z [Enterococcus faecalis TX0102]
gi|384518719|ref|YP_005706024.1| ribonuclease Z [Enterococcus faecalis 62]
gi|422692897|ref|ZP_16750912.1| ribonuclease Z [Enterococcus faecalis TX0031]
gi|422727176|ref|ZP_16783619.1| ribonuclease Z [Enterococcus faecalis TX0312]
gi|422734187|ref|ZP_16790481.1| ribonuclease Z [Enterococcus faecalis TX1341]
gi|229304960|gb|EEN70956.1| ribonuclease Z [Enterococcus faecalis ATCC 29200]
gi|255963689|gb|EET96165.1| ribonuclease Z [Enterococcus faecalis T1]
gi|310630340|gb|EFQ13623.1| ribonuclease Z [Enterococcus faecalis TX0102]
gi|315152356|gb|EFT96372.1| ribonuclease Z [Enterococcus faecalis TX0031]
gi|315158201|gb|EFU02218.1| ribonuclease Z [Enterococcus faecalis TX0312]
gi|315168909|gb|EFU12926.1| ribonuclease Z [Enterococcus faecalis TX1341]
gi|323480852|gb|ADX80291.1| ribonuclease Z [Enterococcus faecalis 62]
Length = 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 25/227 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R +P I P I + V+ R+ S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSL----RVSQSRLSYP 114
Query: 117 LVGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GD 167
L +++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 115 LKFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGP 174
Query: 168 EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV-------DEANIDVL--RARILVMEST 218
KLK T + AF G+ IV N L RA +LV EST
Sbjct: 175 LYGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLAQRADVLVHEST 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ + + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 235 F--NKHEAKMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|423483737|ref|ZP_17460427.1| ribonuclease Z [Bacillus cereus BAG6X1-2]
gi|401141288|gb|EJQ48843.1| ribonuclease Z [Bacillus cereus BAG6X1-2]
Length = 307
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFSVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPI 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQGD 278
>gi|257878181|ref|ZP_05657834.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257881036|ref|ZP_05660689.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257884697|ref|ZP_05664350.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257889621|ref|ZP_05669274.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257892438|ref|ZP_05672091.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260559227|ref|ZP_05831413.1| ribonuclease Z [Enterococcus faecium C68]
gi|261207760|ref|ZP_05922445.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289565835|ref|ZP_06446277.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|293553444|ref|ZP_06674072.1| ribonuclease Z [Enterococcus faecium E1039]
gi|293560345|ref|ZP_06676840.1| ribonuclease Z [Enterococcus faecium E1162]
gi|293569803|ref|ZP_06680890.1| ribonuclease Z [Enterococcus faecium E1071]
gi|294614050|ref|ZP_06693979.1| ribonuclease Z [Enterococcus faecium E1636]
gi|294617214|ref|ZP_06696864.1| ribonuclease Z [Enterococcus faecium E1679]
gi|294620548|ref|ZP_06699849.1| ribonuclease Z [Enterococcus faecium U0317]
gi|314939158|ref|ZP_07846415.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|314943927|ref|ZP_07850644.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|314948037|ref|ZP_07851440.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|314953288|ref|ZP_07856219.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|314993367|ref|ZP_07858734.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|314994953|ref|ZP_07860074.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|383328336|ref|YP_005354220.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|389868486|ref|YP_006375909.1| ribonuclease Z [Enterococcus faecium DO]
gi|406581399|ref|ZP_11056555.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|406583697|ref|ZP_11058751.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|406586015|ref|ZP_11060966.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|406591403|ref|ZP_11065686.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410938171|ref|ZP_11370028.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|415890234|ref|ZP_11549434.1| ribonuclease Z [Enterococcus faecium E4453]
gi|416138563|ref|ZP_11599061.1| ribonuclease Z [Enterococcus faecium E4452]
gi|424790566|ref|ZP_18217099.1| ribonuclease Z [Enterococcus faecium V689]
gi|424796645|ref|ZP_18222345.1| ribonuclease Z [Enterococcus faecium S447]
gi|424819680|ref|ZP_18244749.1| ribonuclease Z [Enterococcus faecium R501]
gi|424855846|ref|ZP_18280140.1| ribonuclease Z [Enterococcus faecium R499]
gi|424877874|ref|ZP_18301515.1| ribonuclease Z [Enterococcus faecium R497]
gi|424945328|ref|ZP_18361031.1| ribonuclease Z [Enterococcus faecium R496]
gi|424953519|ref|ZP_18368473.1| ribonuclease Z [Enterococcus faecium R494]
gi|424957259|ref|ZP_18371995.1| ribonuclease Z [Enterococcus faecium R446]
gi|424961503|ref|ZP_18375943.1| ribonuclease Z [Enterococcus faecium P1986]
gi|424963896|ref|ZP_18378044.1| ribonuclease Z [Enterococcus faecium P1190]
gi|424967518|ref|ZP_18381212.1| ribonuclease Z [Enterococcus faecium P1140]
gi|424969726|ref|ZP_18383279.1| ribonuclease Z [Enterococcus faecium P1139]
gi|424974945|ref|ZP_18388146.1| ribonuclease Z [Enterococcus faecium P1137]
gi|424976355|ref|ZP_18389451.1| ribonuclease Z [Enterococcus faecium P1123]
gi|424981849|ref|ZP_18394552.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|424985274|ref|ZP_18397758.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|424987221|ref|ZP_18399605.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|424992003|ref|ZP_18404109.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|424994170|ref|ZP_18406123.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|424998570|ref|ZP_18410248.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|425001540|ref|ZP_18413045.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|425004179|ref|ZP_18415507.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|425007433|ref|ZP_18418564.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|425010862|ref|ZP_18421792.1| ribonuclease Z [Enterococcus faecium E422]
gi|425013930|ref|ZP_18424629.1| ribonuclease Z [Enterococcus faecium E417]
gi|425017575|ref|ZP_18428075.1| ribonuclease Z [Enterococcus faecium C621]
gi|425021372|ref|ZP_18431630.1| ribonuclease Z [Enterococcus faecium C497]
gi|425022936|ref|ZP_18433088.1| ribonuclease Z [Enterococcus faecium C1904]
gi|425032701|ref|ZP_18437725.1| ribonuclease Z [Enterococcus faecium 515]
gi|425036475|ref|ZP_18441224.1| ribonuclease Z [Enterococcus faecium 514]
gi|425039314|ref|ZP_18443865.1| ribonuclease Z [Enterococcus faecium 513]
gi|425041269|ref|ZP_18445676.1| ribonuclease Z [Enterococcus faecium 511]
gi|425046260|ref|ZP_18450289.1| ribonuclease Z [Enterococcus faecium 510]
gi|425048319|ref|ZP_18452228.1| ribonuclease Z [Enterococcus faecium 509]
gi|425051710|ref|ZP_18455360.1| ribonuclease Z [Enterococcus faecium 506]
gi|425060699|ref|ZP_18463981.1| ribonuclease Z [Enterococcus faecium 503]
gi|427394986|ref|ZP_18887908.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430820209|ref|ZP_19438845.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430822218|ref|ZP_19440797.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430825269|ref|ZP_19443474.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430828522|ref|ZP_19446642.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430830468|ref|ZP_19448526.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430833352|ref|ZP_19451365.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430836048|ref|ZP_19454033.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430837840|ref|ZP_19455790.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430844340|ref|ZP_19462238.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430846321|ref|ZP_19464181.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430849926|ref|ZP_19467693.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430852629|ref|ZP_19470360.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430854570|ref|ZP_19472283.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430858399|ref|ZP_19476027.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430862137|ref|ZP_19479489.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430864714|ref|ZP_19480539.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430870818|ref|ZP_19483424.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430959858|ref|ZP_19486993.1| ribonuclease Z [Enterococcus faecium E1576]
gi|431008979|ref|ZP_19489419.1| ribonuclease Z [Enterococcus faecium E1578]
gi|431195454|ref|ZP_19500432.1| ribonuclease Z [Enterococcus faecium E1620]
gi|431228550|ref|ZP_19501691.1| ribonuclease Z [Enterococcus faecium E1622]
gi|431258989|ref|ZP_19505166.1| ribonuclease Z [Enterococcus faecium E1623]
gi|431295275|ref|ZP_19507163.1| ribonuclease Z [Enterococcus faecium E1626]
gi|431369891|ref|ZP_19509590.1| ribonuclease Z [Enterococcus faecium E1627]
gi|431539677|ref|ZP_19517881.1| ribonuclease Z [Enterococcus faecium E1731]
gi|431622424|ref|ZP_19522851.1| ribonuclease Z [Enterococcus faecium E1904]
gi|431743652|ref|ZP_19532528.1| ribonuclease Z [Enterococcus faecium E2071]
gi|431745931|ref|ZP_19534768.1| ribonuclease Z [Enterococcus faecium E2134]
gi|431748561|ref|ZP_19537317.1| ribonuclease Z [Enterococcus faecium E2297]
gi|431754572|ref|ZP_19543233.1| ribonuclease Z [Enterococcus faecium E2883]
gi|431765358|ref|ZP_19553872.1| ribonuclease Z [Enterococcus faecium E4215]
gi|431766942|ref|ZP_19555402.1| ribonuclease Z [Enterococcus faecium E1321]
gi|431770562|ref|ZP_19558962.1| ribonuclease Z [Enterococcus faecium E1644]
gi|431773085|ref|ZP_19561419.1| ribonuclease Z [Enterococcus faecium E2369]
gi|431776048|ref|ZP_19564316.1| ribonuclease Z [Enterococcus faecium E2560]
gi|431778489|ref|ZP_19566700.1| ribonuclease Z [Enterococcus faecium E4389]
gi|431782148|ref|ZP_19570286.1| ribonuclease Z [Enterococcus faecium E6012]
gi|431785464|ref|ZP_19573489.1| ribonuclease Z [Enterococcus faecium E6045]
gi|447913076|ref|YP_007394488.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
gi|257812409|gb|EEV41167.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257816694|gb|EEV44022.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257820535|gb|EEV47683.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257825981|gb|EEV52607.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257828817|gb|EEV55424.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260074984|gb|EEW63300.1| ribonuclease Z [Enterococcus faecium C68]
gi|260078143|gb|EEW65849.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289162378|gb|EFD10236.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|291587551|gb|EFF19428.1| ribonuclease Z [Enterococcus faecium E1071]
gi|291593096|gb|EFF24676.1| ribonuclease Z [Enterococcus faecium E1636]
gi|291596527|gb|EFF27770.1| ribonuclease Z [Enterococcus faecium E1679]
gi|291599785|gb|EFF30789.1| ribonuclease Z [Enterococcus faecium U0317]
gi|291602321|gb|EFF32545.1| ribonuclease Z [Enterococcus faecium E1039]
gi|291605690|gb|EFF35129.1| ribonuclease Z [Enterococcus faecium E1162]
gi|313590810|gb|EFR69655.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|313592151|gb|EFR70996.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|313594670|gb|EFR73515.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|313597431|gb|EFR76276.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|313641538|gb|EFS06118.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|313645517|gb|EFS10097.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|364090988|gb|EHM33509.1| ribonuclease Z [Enterococcus faecium E4452]
gi|364094529|gb|EHM36689.1| ribonuclease Z [Enterococcus faecium E4453]
gi|378938030|gb|AFC63102.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|388533735|gb|AFK58927.1| ribonuclease Z [Enterococcus faecium DO]
gi|402920627|gb|EJX41125.1| ribonuclease Z [Enterococcus faecium V689]
gi|402922695|gb|EJX43048.1| ribonuclease Z [Enterococcus faecium S447]
gi|402926011|gb|EJX46085.1| ribonuclease Z [Enterococcus faecium R501]
gi|402931079|gb|EJX50679.1| ribonuclease Z [Enterococcus faecium R499]
gi|402934231|gb|EJX53599.1| ribonuclease Z [Enterococcus faecium R497]
gi|402935205|gb|EJX54474.1| ribonuclease Z [Enterococcus faecium R496]
gi|402938795|gb|EJX57772.1| ribonuclease Z [Enterococcus faecium R494]
gi|402943499|gb|EJX61981.1| ribonuclease Z [Enterococcus faecium P1986]
gi|402943978|gb|EJX62430.1| ribonuclease Z [Enterococcus faecium R446]
gi|402947915|gb|EJX66095.1| ribonuclease Z [Enterococcus faecium P1190]
gi|402954205|gb|EJX71846.1| ribonuclease Z [Enterococcus faecium P1140]
gi|402955195|gb|EJX72750.1| ribonuclease Z [Enterococcus faecium P1137]
gi|402962442|gb|EJX79381.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|402963489|gb|EJX80351.1| ribonuclease Z [Enterococcus faecium P1139]
gi|402966254|gb|EJX82905.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|402969804|gb|EJX86189.1| ribonuclease Z [Enterococcus faecium P1123]
gi|402974875|gb|EJX90882.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|402974916|gb|EJX90916.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|402980678|gb|EJX96266.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|402982622|gb|EJX98074.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|402986150|gb|EJY01294.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|402990280|gb|EJY05155.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|402995032|gb|EJY09518.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|402998637|gb|EJY12885.1| ribonuclease Z [Enterococcus faecium E422]
gi|402999898|gb|EJY14064.1| ribonuclease Z [Enterococcus faecium E417]
gi|403004048|gb|EJY17881.1| ribonuclease Z [Enterococcus faecium C621]
gi|403006910|gb|EJY20520.1| ribonuclease Z [Enterococcus faecium C497]
gi|403011523|gb|EJY24819.1| ribonuclease Z [Enterococcus faecium C1904]
gi|403012306|gb|EJY25543.1| ribonuclease Z [Enterococcus faecium 515]
gi|403014515|gb|EJY27510.1| ribonuclease Z [Enterococcus faecium 514]
gi|403016581|gb|EJY29392.1| ribonuclease Z [Enterococcus faecium 513]
gi|403024797|gb|EJY36930.1| ribonuclease Z [Enterococcus faecium 510]
gi|403026321|gb|EJY38319.1| ribonuclease Z [Enterococcus faecium 511]
gi|403031005|gb|EJY42653.1| ribonuclease Z [Enterococcus faecium 509]
gi|403037105|gb|EJY48428.1| ribonuclease Z [Enterococcus faecium 506]
gi|403042354|gb|EJY53314.1| ribonuclease Z [Enterococcus faecium 503]
gi|404452700|gb|EJZ99854.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|404456256|gb|EKA02985.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|404461791|gb|EKA07650.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|404467784|gb|EKA12848.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410733458|gb|EKQ75382.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|425724122|gb|EKU87006.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430439699|gb|ELA50020.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430443276|gb|ELA53261.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430446162|gb|ELA55847.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430483070|gb|ELA60169.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430483355|gb|ELA60433.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430486807|gb|ELA63643.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430488888|gb|ELA65536.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430492120|gb|ELA68534.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430496930|gb|ELA72989.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430536621|gb|ELA76988.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430539115|gb|ELA79377.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430541463|gb|ELA81608.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430545608|gb|ELA85581.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430548229|gb|ELA88134.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430549428|gb|ELA89260.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430553495|gb|ELA93181.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430556342|gb|ELA95850.1| ribonuclease Z [Enterococcus faecium E1576]
gi|430558777|gb|ELA98183.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430560894|gb|ELB00186.1| ribonuclease Z [Enterococcus faecium E1578]
gi|430571832|gb|ELB10706.1| ribonuclease Z [Enterococcus faecium E1620]
gi|430574852|gb|ELB13615.1| ribonuclease Z [Enterococcus faecium E1622]
gi|430577084|gb|ELB15689.1| ribonuclease Z [Enterococcus faecium E1623]
gi|430581365|gb|ELB19810.1| ribonuclease Z [Enterococcus faecium E1626]
gi|430583638|gb|ELB21996.1| ribonuclease Z [Enterococcus faecium E1627]
gi|430593897|gb|ELB31872.1| ribonuclease Z [Enterococcus faecium E1731]
gi|430603394|gb|ELB40919.1| ribonuclease Z [Enterococcus faecium E1904]
gi|430606441|gb|ELB43792.1| ribonuclease Z [Enterococcus faecium E2071]
gi|430609571|gb|ELB46755.1| ribonuclease Z [Enterococcus faecium E2134]
gi|430613334|gb|ELB50350.1| ribonuclease Z [Enterococcus faecium E2297]
gi|430619166|gb|ELB55994.1| ribonuclease Z [Enterococcus faecium E2883]
gi|430628445|gb|ELB64880.1| ribonuclease Z [Enterococcus faecium E4215]
gi|430631815|gb|ELB68115.1| ribonuclease Z [Enterococcus faecium E1321]
gi|430635489|gb|ELB71585.1| ribonuclease Z [Enterococcus faecium E1644]
gi|430637372|gb|ELB73395.1| ribonuclease Z [Enterococcus faecium E2369]
gi|430641785|gb|ELB77579.1| ribonuclease Z [Enterococcus faecium E2560]
gi|430644035|gb|ELB79738.1| ribonuclease Z [Enterococcus faecium E4389]
gi|430647433|gb|ELB82879.1| ribonuclease Z [Enterococcus faecium E6045]
gi|430648163|gb|ELB83586.1| ribonuclease Z [Enterococcus faecium E6012]
gi|445188785|gb|AGE30427.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
Length = 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N D I
Sbjct: 174 LYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|407452811|ref|YP_006724536.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
gi|403313795|gb|AFR36636.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
Length = 304
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVH 105
R ++ N +FISH H DH GLP +A+ R L R P I P I+E +E +F +
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 106 RRMDHSE-LNHTLVGLDVGEEFCMRKDLFVKAFKT--YHVIQSQGYVVYSVKQKLKQEYL 162
E + H L G + + +D V+ F H I GY+ ++K K+ +L
Sbjct: 107 ETQRGFEVIYHELEG---NQSVKIYEDHKVEVFTIPLNHRIYCNGYL---FREKPKERHL 160
Query: 163 GLPGDEIKKLK----------SSGTEITYT----------VTTPEVAFTGDTMSDFIVDE 202
+ +EI K G + T + T P+ + + SD E
Sbjct: 161 NM--EEISKYPEIETCDYHNLKKGKDFTLSDGFVLKNEVLTTPPQPSVSYAFCSDTRYLE 218
Query: 203 ANIDVLRA-RILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSAR 260
+ + +++ +L E+T++ D +++ DY GHT E A+K K ++L HFS R
Sbjct: 219 SIVPIIKGVDVLYHEATFLHD---LKEMADYTGHTTALEAATIAQKAGVKKLILGHFSNR 275
Query: 261 H 261
+
Sbjct: 276 Y 276
>gi|289581539|ref|YP_003480005.1| ribonuclease Z [Natrialba magadii ATCC 43099]
gi|448283047|ref|ZP_21474326.1| ribonuclease Z [Natrialba magadii ATCC 43099]
gi|289531092|gb|ADD05443.1| ribonuclease Z [Natrialba magadii ATCC 43099]
gi|445574755|gb|ELY29243.1| ribonuclease Z [Natrialba magadii ATCC 43099]
Length = 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 51/283 (18%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P + P
Sbjct: 32 ELLFDAGEGIQRQMMRFGTGFSISHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAVHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGE-EFCMRKDLF-VKAFKTYHVIQSQG 147
+ ++ L +R +N +VG+ + R D + ++AF T H +S G
Sbjct: 92 HGTRRQLKGLVNALGNRPSFPVRIN------EVGDGDVAYRADEYEIRAFGTDHDTRSVG 145
Query: 148 YVVYSVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITY---TVTTPE----------- 187
Y + +K + E LG+P G + KL +G + TV PE
Sbjct: 146 YALVEDDRKGRFDREHAEELGVPVGPKFSKLH-NGEPVELEDGTVVDPEQVVGEPRPGRS 204
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
+ +TGDT EA + +L+ ++T+ +D ++A H+ + E A +
Sbjct: 205 LVYTGDTRPTVATIEAADE---PDLLIHDATFAEDR--ADRAAKTAHSTAQQAAEIATRA 259
Query: 248 ENKAILLIHFSAR---HKVDEIRRAVDAVPAPLAGRVFALTEG 287
K + L+H S+R H D + A D G VF +G
Sbjct: 260 GAKRLALMHISSRYAGHTGDHLAEARDV----FDGEVFVPEDG 298
>gi|378581464|ref|ZP_09830111.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
gi|377815971|gb|EHT99079.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
Length = 303
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 24/229 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P+ +K VE + +++
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPAGLKAFVETALSLSS--SYTDYPLE 115
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGLP-GDE 168
+V + G E + V A+ H I GY + + +LK E G+P G
Sbjct: 116 IVEIAAG-EVLDDGEFRVTAWPMNHTIACFGYRIEQHDKPGFLDAPRLKAE--GVPRGPW 172
Query: 169 IKKLKSSGT---EITYTVTTPEV---AFTGDTMSDFIVDEANIDV---LRARILVMESTY 219
++LK T E TV E G T++ F D A DV L A + VM
Sbjct: 173 YQQLKQGDTITLEDGRTVNGAEYLGPPVKGKTLAIF-GDTAPTDVALQLAAGVDVMVHET 231
Query: 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ E+A GH+ + A++ K ++ HFS+R+ ++ R
Sbjct: 232 TLEEALAEKANGRGHSTTLQAATVAKQAGAKRLIATHFSSRYLARDMAR 280
>gi|379704996|ref|YP_005203455.1| Ribonuclease Z [Streptococcus infantarius subsp. infantarius CJ18]
gi|374681695|gb|AEZ61984.1| Ribonuclease Z [Streptococcus infantarius subsp. infantarius CJ18]
Length = 275
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T I P I+ V + R+
Sbjct: 25 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLDIYGPVGIRSYVLNSLRLSGARLPYRIH 84
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L E L G
Sbjct: 85 FHEFDENSLGK------VMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDAEALKAAG 138
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+KS GT+I ++ P+ + D +A++ + L A I
Sbjct: 139 VPFGPLFGKIKSGQDVVLEDGTKIIAKDYISAPKKGKVITVLGDTRKTDASVRLGLGADI 198
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR +GH+ ++ + A++ K +LL H SAR
Sbjct: 199 LVHESTYGKGDERI--ARKHGHSTGTQAAQIAKEASAKCLLLNHISAR 244
>gi|229071647|ref|ZP_04204865.1| Ribonuclease Z [Bacillus cereus F65185]
gi|228711583|gb|EEL63540.1| Ribonuclease Z [Bacillus cereus F65185]
Length = 307
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL--------GLPG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMSVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|431499524|ref|ZP_19515103.1| ribonuclease Z [Enterococcus faecium E1634]
gi|430588160|gb|ELB26365.1| ribonuclease Z [Enterococcus faecium E1634]
Length = 313
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N DV
Sbjct: 174 LYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSDV----- 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|425058500|ref|ZP_18461881.1| ribonuclease Z [Enterococcus faecium 504]
gi|403038441|gb|EJY49657.1| ribonuclease Z [Enterococcus faecium 504]
Length = 313
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPSGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N D I
Sbjct: 174 LYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H SAR+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISARY 275
>gi|448388881|ref|ZP_21565440.1| ribonuclease Z [Haloterrigena salina JCM 13891]
gi|445669339|gb|ELZ21950.1| ribonuclease Z [Haloterrigena salina JCM 13891]
Length = 314
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 41 LAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + S + LF++H H DH+ G+P + T R +P I P+
Sbjct: 33 LLFDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAIHTPA 92
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
+ +++ L +R +N G + R D + V+AF T H +S GY
Sbjct: 93 GTRRELKGLVNALGNRPSFPVRINEVGDG-----DVAYRADEYEVRAFATDHDARSVGYA 147
Query: 150 VYSVKQK-----LKQEYLGLP-GDEIKKL-KSSGTEI-TYTVTTPE-----------VAF 190
+ +K + E LG+P G + KL + E+ TV P+ + +
Sbjct: 148 LVEDDRKGRFDRERAEELGVPVGPKFSKLHEGEPVELEDGTVVDPDQVVGDPRPGRVIVY 207
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
TGDT +L+ ++T+ DD ++A + H+ + E A +
Sbjct: 208 TGDTRP---AAATVEAAEEPDLLIHDATFADDR--ADRAAETAHSTARQAAEIANRAGAD 262
Query: 251 AILLIHFSARH 261
+ L+H S+R+
Sbjct: 263 RLALMHLSSRY 273
>gi|325103868|ref|YP_004273522.1| RNAse Z [Pedobacter saltans DSM 12145]
gi|324972716|gb|ADY51700.1| RNAse Z [Pedobacter saltans DSM 12145]
Length = 303
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 33/253 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVE-QLFEVHRRMDHSELNH 115
+FISH H DH GL +++ L R KP + P + + ++ QL R+ +LN
Sbjct: 58 IFISHLHGDHFFGLIGLISSMNLNGRRKPLNLFGPQGLLDIIQIQLKYSDTRLIF-DLNF 116
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLPGDEIK 170
T + + +D V+ H I G++V ++ K K E L +P +
Sbjct: 117 TALDPNNTGLVYETRDFTVETIPLNHRIPCTGFIVREKQRQRKILKEKVEKLNIPPEYYP 176
Query: 171 KLK-------SSGT-----EITYTVTTPEV-AFTGDTMSDFIVDEANIDVL-RARILVME 216
+K SSG ++T P+ A+ DT+ +DE I+ L + L E
Sbjct: 177 LIKRGIDYTDSSGYVYKAFDLTTEADVPKAYAYCSDTL----LDERYINKLTKVDTLYHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK-----VDEIRRAVD 271
+T++ D +++A++ H+ E A+K K +L+ HFSAR+K + E R
Sbjct: 233 ATFLHD--MIDRAKETHHSTALEAATVAKKIGAKKLLIGHFSARYKDLGALLQEARSVFS 290
Query: 272 AVPAPLAGRVFAL 284
G+VF +
Sbjct: 291 NTQIANQGQVFEI 303
>gi|242398813|ref|YP_002994237.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
gi|259494147|sp|C6A2P3.1|RNZ_THESM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|242265206|gb|ACS89888.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
Length = 306
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 56/269 (20%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ +DIG R L L FI+H H DH GL + T L+ R +P I P
Sbjct: 32 ILWDIGEGTLRQLDTTKLSPMKIEKIFITHFHGDHYLGLMSLIQTMTLWKRERPLYIYGP 91
Query: 92 SCIKEDVEQL---------FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
E ++ FE+H ++GE KD + +FK H
Sbjct: 92 KYTFEFIQNYLKSGFFRPSFEIHIH-------------ELGETRLKFKDYEIWSFKVDHG 138
Query: 143 IQSQGYVVYSVKQK-----LKQEYLGL-PGDEIKKLKSSGT-EITYTVTTPE-------- 187
I + GYV ++ K LGL PG +KKL+ G EI + E
Sbjct: 139 IPALGYVFKENDKRGNFDVEKIRELGLKPGPWMKKLEIKGKIEINGKLIYLEDVTGEPKK 198
Query: 188 ---VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
+ +TGDT + + RA +L+ E+TY+ + E D H+ + E E A
Sbjct: 199 GVKIVYTGDTEQ---CERIKLFSERADLLIHEATYL----SREDKGDSYHSTVEEACETA 251
Query: 245 EKFENKAILLIHFSARHKVDEIRRAVDAV 273
++ + + + L H + R+K +E + + +
Sbjct: 252 KRAKVELLALFHRAPRYKYEEYVQEANKI 280
>gi|227830151|ref|YP_002831930.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
gi|259494142|sp|C3MPH2.1|RNZ_SULIL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227456598|gb|ACP35285.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
Length = 291
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 60/259 (23%)
Query: 39 LDLAFDIGRCPSRALSQN--------FLFISHAHMDHIGGLPMYVATRGLY-RMKPPTII 89
L++ D G L N + I+H H DH+ GL +A+ GL R + I+
Sbjct: 30 LNILLDCGEGTQYTLMNNKLGINSIKIIGITHMHGDHVFGLLGVIASMGLLDRKETLYIL 89
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ + FE +S+ N + ++ + + +++ + FKT H ++SQGY+
Sbjct: 90 GPRDLKDFLYTSFE------YSKFNPSF-KIEFIDNYN-DQNITIATFKTCHTVESQGYL 141
Query: 150 V--------------------YSVKQKLKQ----EYLGLPGDEIKKLKSSGTEITYTVTT 185
+ + V +KLK+ EY G K LK Y V
Sbjct: 142 ISERDRVKIDEEKLEKEKIKDWRVMRKLKEGKTVEYNG------KFLKPE----DYLVIK 191
Query: 186 P--EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+VA+TGDT+ V E+ V A +L+ +ST++++ + A YGH+++++ +
Sbjct: 192 RGLKVAYTGDTIPCQSVIES---VKGADLLIHDSTFLNEPS----AFTYGHSNVADAAKV 244
Query: 244 AEKFENKAILLIHFSARHK 262
A + K + L H S R++
Sbjct: 245 ALEASVKLLALTHISPRYE 263
>gi|300812694|ref|ZP_07093103.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496321|gb|EFK31434.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 25/223 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I EQ + R+ +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGI----EQFVKTSLRISKAKISYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLK------QEYLGLPGDE 168
+ V L+ G + + V K H I S G+ V + + E+ G
Sbjct: 115 IKFVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKLAEFKVPNGPL 174
Query: 169 IKKLK-SSGTEITYTVTTPEVAFTGDTMSDFIV----DEANIDVLR-----ARILVMEST 218
+ KLK E+ F G +V D + +R A +LV E+T
Sbjct: 175 LGKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ D++ + ARDY H+ ++ E A + L H SAR+
Sbjct: 235 F--DASEGKLARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|422821010|ref|ZP_16869203.1| ribonuclease Z [Streptococcus sanguinis SK353]
gi|422851395|ref|ZP_16898065.1| ribonuclease Z [Streptococcus sanguinis SK150]
gi|324991628|gb|EGC23561.1| ribonuclease Z [Streptococcus sanguinis SK353]
gi|325694700|gb|EGD36606.1| ribonuclease Z [Streptococcus sanguinis SK150]
Length = 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTSASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|383811780|ref|ZP_09967234.1| ribonuclease Z [Prevotella sp. oral taxon 306 str. F0472]
gi|383355587|gb|EID33117.1| ribonuclease Z [Prevotella sp. oral taxon 306 str. F0472]
Length = 304
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GLP ++T G+ R P I PS + ++Q + + E+
Sbjct: 59 VFISHLHGDHCFGLPGMLSTFGMTGRTAPLHIYAPSSFEPILQQTLDFFCQGLGFEV--I 116
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
GLD ++ + +D L V+ H ++ G+ ++ KQ L ++ +P +
Sbjct: 117 FHGLDTTQQKVIYEDRSLTVETIPLQHRVECCGF-LFREKQTLPHIRRDMIDFYHIPISQ 175
Query: 169 IKKLKSSGTEITY--------TVTTPEV-----AFTGDTMSDFIVDEANIDVLRARILVM 215
I +K+ IT +T+P A+ DT + + V L
Sbjct: 176 INNIKNGADWITPDGDIIPNDRLTSPATPARSYAYCSDTR---YIKSLSKQVQGVNTLYH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
ESTY+ + ++A+ Y H+ + + A + +LL H+SAR+ +E+
Sbjct: 233 ESTYL--AKDADRAKLYWHSTSEQAAKVAHDAKVGKLLLGHYSARYNNEEL 281
>gi|423317236|ref|ZP_17295141.1| ribonuclease Z [Bergeyella zoohelcum ATCC 43767]
gi|405581369|gb|EKB55398.1| ribonuclease Z [Bergeyella zoohelcum ATCC 43767]
Length = 304
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FISH H DH GLP +++ R L R P I P I E +E +F + H E N
Sbjct: 56 NHIFISHLHGDHCFGLPGLISSFRLLGREAPLHIYGPKGIAEMLETIFRI--TDSHREFN 113
Query: 115 HTLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK- 171
L + + +D L V H I + GY ++ KQ L+ L +EIKK
Sbjct: 114 VIYHELSSKQSELIYEDHKLTVHTIPLNHRIYANGY-LFREKQGLRH----LNMEEIKKY 168
Query: 172 -----------------LKSSGTEITYTV-TTP-----EVAFTGDT--MSDFIVDEANID 206
L S G + V TTP AF DT D + +D
Sbjct: 169 PEIEVCDYHKLKKGEDFLLSDGYLLKNEVLTTPAEKGKSYAFCSDTRFKPDIVPIIKGVD 228
Query: 207 VLRARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARHK--- 262
V L E+T++ D +++ DY GHT E A++ E ++L HFS R+
Sbjct: 229 V-----LYHEATFLHD---LKEMADYTGHTTAMEAALIAKEAEAGKLILGHFSNRYSDLS 280
Query: 263 --VDEIR 267
+DE R
Sbjct: 281 VFLDETR 287
>gi|229086713|ref|ZP_04218880.1| Ribonuclease Z [Bacillus cereus Rock3-44]
gi|228696587|gb|EEL49405.1| Ribonuclease Z [Bacillus cereus Rock3-44]
Length = 307
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 27/247 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
L +++ EE + +D V+ + H I+ GY + + +KL +E + PG
Sbjct: 115 LEIVEITEEGIVFEDNQFSVETKRLSHGIECFGYRIVEKDIQGQLLVEKLLEEGVK-PGP 173
Query: 168 EIKKLKSSGT-EITYTVTTPEVAFTGDTMSDFIV---------DEANIDVLRARILVMES 217
K+LK T E+ F G I+ + +N A +LV E+
Sbjct: 174 IFKRLKDGETVELEDGRVLCGNDFIGPPQKGRIITILGDTRYCEASNQLAQDADVLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPL 277
T+ + QA DY H+ + A + K ++L H S+R++ D + + A
Sbjct: 234 TFAAEDE--RQAHDYFHSTTEQAARIAVQANVKRLILTHISSRYQGDMYKELLKEAQALF 291
Query: 278 AGRVFAL 284
A A+
Sbjct: 292 ANTEIAM 298
>gi|212710279|ref|ZP_03318407.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
gi|212687086|gb|EEB46614.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
Length = 305
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P +K+ VE + V L
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVEIVLSVSDSFMTYPLE-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDE 168
+V ++ GE F +L V A++ H ++ GY + QKL+Q+ G+P G
Sbjct: 117 IVEIEAGELF-DDGELVVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQD--GIPRGPW 173
Query: 169 IKKLK-------------SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVM 215
++ LK + + V VA GDT EA + A ++V
Sbjct: 174 MQALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTP---TPEALLLAKNANVMVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + +A ++GH+ + + A++ K + H S R+ ++ R
Sbjct: 231 ETTL--EVALEVKANEHGHSSTRQAAQLAKQANVKRFIATHLSGRYGPADLPR 281
>gi|196248795|ref|ZP_03147495.1| ribonuclease Z [Geobacillus sp. G11MC16]
gi|196211671|gb|EDY06430.1| ribonuclease Z [Geobacillus sp. G11MC16]
Length = 306
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P T+ P I++ VE V ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGL-PGDE 168
+ +D G F + V A + H + S G+ V + +LK LG+ PG
Sbjct: 117 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRVAEKDLPGPLLVDRLKA--LGVRPGPI 173
Query: 169 IKKLKSSGTEITYT---------VTTPEVAFTGDTMSDFIVDEANIDVL-RARILVMEST 218
+++K T + V P+ + D EA I++ A +++ E+T
Sbjct: 174 YQQIKQGKTVVLEDGTVLDGREFVGPPQKGRIVAVLGDTRFCEAAIELAHEADVVIHEAT 233
Query: 219 YVDDSTTVEQ--ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
+ EQ ARDY H+ ++ E A++ K ++L H S+R++ + + ++
Sbjct: 234 FA----AAEQRLARDYFHSTTTDAAEVAKRAGAKRLILTHISSRYQGEAALKLLEE---- 285
Query: 277 LAGRVFALTE 286
A RVF TE
Sbjct: 286 -ARRVFPNTE 294
>gi|350533410|ref|ZP_08912351.1| ribonuclease Z [Vibrio rotiferianus DAT722]
Length = 325
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 44/249 (17%)
Query: 53 LSQNFL---FISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRM 108
LS N+L I+H H DH GLP +A+ G+ K P TII P + +EQ FE +
Sbjct: 50 LSLNYLQAICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP----KGIEQWFEATQAF 105
Query: 109 DHSELNHTLVGLDVGE-------EFCMRKDLFVKAFKTYHVIQSQGYV-VYSVKQKLKQE 160
L L ++V + +F + + ++ + + +Y KL+Q
Sbjct: 106 TKLYLPFELHFIEVEQFDSIEIGQFTITATILSHRVPSFAFCFEESTIRMYPDIDKLEQS 165
Query: 161 YLGLPGDEIKKLKSSGTEITYT-VTTPEVAFT------------GDTMSDFIVDEANIDV 207
+P I G ++ Y T AFT GD + +D +
Sbjct: 166 --NIPRGPIWGELVRGNDVEYQGQTLMSKAFTKFAHPPRKAIICGDNDTPEKLDGL---I 220
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK----- 262
A +LV ESTY + E+A + GH + S++ YA+ + ++L HFS R++
Sbjct: 221 EGAHLLVHESTYSE--AMKERAGEVGHAYSSQVANYAQAKQVSNLILTHFSPRYQFSSEA 278
Query: 263 ---VDEIRR 268
+++IR+
Sbjct: 279 EVSIEQIRK 287
>gi|422848467|ref|ZP_16895143.1| ribonuclease Z [Streptococcus sanguinis SK115]
gi|422876151|ref|ZP_16922621.1| ribonuclease Z [Streptococcus sanguinis SK1056]
gi|325690509|gb|EGD32512.1| ribonuclease Z [Streptococcus sanguinis SK115]
gi|332360959|gb|EGJ38763.1| ribonuclease Z [Streptococcus sanguinis SK1056]
Length = 309
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTAASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|312136968|ref|YP_004004305.1| rnase z [Methanothermus fervidus DSM 2088]
gi|311224687|gb|ADP77543.1| RNAse Z [Methanothermus fervidus DSM 2088]
Length = 328
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI G+P + + G R KP TI P IKE E + ++ ++N
Sbjct: 57 IFISHLHGDHILGIPGLIQSMGFRNRKKPLTIYGPPGIKEVKEAMMKLGEFSIDFDINVK 116
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK--LKQEYLGL---PGDEIK 170
+ E + + ++ KT H ++ Y + K+ L+++ + L PG
Sbjct: 117 EIK---NEGIVFENEKYKIECIKTKHTTENYSYSIEEKKRPRFLREKAIKLGVKPGPAFS 173
Query: 171 KL-KSSGTEITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMEST 218
KL + ++ + PE V ++GDT+ + E D A +L+ +ST
Sbjct: 174 KLHRGIPVKVGDRIVKPEEVLGKPRKGIKVVYSGDTVPHEKMIEFAKD---ADLLIHDST 230
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ ++ +A + GH+ + + A++ K ++L H S R++
Sbjct: 231 F--EAGKENKALETGHSTAKDAAKIAKEANVKYLVLTHLSTRYR 272
>gi|422859893|ref|ZP_16906537.1| ribonuclease Z [Streptococcus sanguinis SK330]
gi|327470776|gb|EGF16232.1| ribonuclease Z [Streptococcus sanguinis SK330]
Length = 309
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLAIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTPASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|290473490|ref|YP_003466359.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
gi|289172792|emb|CBJ79563.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
Length = 304
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRR-----MDHS 111
+FI+H H DHI GLP + +R + P T+ P I++ VE ++ +D
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDPVTLYGPKGIRQFVETTLQLSGSFLTYPLDIV 118
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGL 164
E+ L+ D GE L V A+ H ++ GY + Q+L Q+ +
Sbjct: 119 EVQSGLL-FDDGE-------LKVTAYALNHRVECYGYRIEEHDKPGGLNTQRLNQD--NI 168
Query: 165 P-GDEIKKLKSSGT-------------EITYTVTTPEVAFTGDT--MSDFIVDEANIDVL 208
P G ++ LK GT + ++ +A GDT + + AN+DV
Sbjct: 169 PRGSWMQTLKQGGTVTLEDGRTVCGKDYLGAPISGKSLAIFGDTTPTPEALKLAANVDV- 227
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+V E T D E+A + GH+ + A + K + H S R+ +++ R
Sbjct: 228 ----MVHEITLED--ALAEKANNNGHSTTKQAATLARDAKAKHFIATHISGRYGIEDCPR 281
>gi|260590997|ref|ZP_05856455.1| ribonuclease Z [Prevotella veroralis F0319]
gi|260536862|gb|EEX19479.1| ribonuclease Z [Prevotella veroralis F0319]
Length = 304
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GLP ++T G+ R P I PS + ++Q + + E+
Sbjct: 59 VFISHLHGDHCFGLPGMLSTFGMTGRTAPLHIYAPSSFEPILQQTLDFFCQGLGFEV--I 116
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
GLD ++ + +D L V+ H ++ G+ ++ KQ L ++ +P +
Sbjct: 117 FHGLDTTQQKVIYEDRSLTVETIPLQHRVECCGF-LFREKQMLPHIRRDMIDFYHIPISQ 175
Query: 169 IKKLKSSGTEITY--------TVTTPEV-----AFTGDTMSDFIVDEANIDVLRARILVM 215
I +K+ IT +T+P A+ DT + + V L
Sbjct: 176 INNIKNGADWITPDGDIIPNDRLTSPATPARSYAYCSDTR---YIKSLSKQVQGVNTLYH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
ESTY+ + ++A+ Y H+ + + A + +LL H+SAR+ +E+
Sbjct: 233 ESTYL--AKDADRAKLYWHSTSEQAAKVAHDAKVGKLLLGHYSARYNNEEL 281
>gi|422699091|ref|ZP_16756964.1| ribonuclease Z [Enterococcus faecalis TX1346]
gi|315172396|gb|EFU16413.1| ribonuclease Z [Enterococcus faecalis TX1346]
Length = 313
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 94/226 (41%), Gaps = 23/226 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I V + R+ S L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPV---GVADFVKTSLRVSQSRLSYPL 115
Query: 118 VGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GDE 168
+++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 116 KFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPL 175
Query: 169 IKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV-------DEANIDVL--RARILVMESTY 219
KLK T + AF G+ IV N L RA +LV EST+
Sbjct: 176 YGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLAQRADVLVHESTF 235
Query: 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 236 --NKHEAKMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|138895904|ref|YP_001126357.1| ribonuclease Z [Geobacillus thermodenitrificans NG80-2]
gi|134267417|gb|ABO67612.1| Metal-dependent hydrolase [Geobacillus thermodenitrificans NG80-2]
Length = 308
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P T+ P I++ VE V ELN
Sbjct: 61 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 118
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGL-PGDE 168
+ +D G F + V A + H + S G+ V + +LK LG+ PG
Sbjct: 119 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRVAEKDLPGPLLVDRLKA--LGVRPGPI 175
Query: 169 IKKLKSSGTEITYT---------VTTPEVAFTGDTMSDFIVDEANIDVL-RARILVMEST 218
+++K T + V P+ + D EA I++ A +++ E+T
Sbjct: 176 YQQIKQGKTVVLEDGTVLDGREFVGPPQKGRIVAVLGDTRFCEAAIELAHEADVVIHEAT 235
Query: 219 YVDDSTTVEQ--ARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAP 276
+ EQ ARDY H+ ++ E A++ K ++L H S+R++ + + ++
Sbjct: 236 FA----AAEQRLARDYFHSTTTDAAEVAKRAGAKRLILTHISSRYQGEAALKLLEE---- 287
Query: 277 LAGRVFALTE 286
A RVF TE
Sbjct: 288 -ARRVFPNTE 296
>gi|422883981|ref|ZP_16930430.1| ribonuclease Z [Streptococcus sanguinis SK49]
gi|332362079|gb|EGJ39881.1| ribonuclease Z [Streptococcus sanguinis SK49]
Length = 309
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDEDSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAVG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTAASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|229545696|ref|ZP_04434421.1| ribonuclease Z [Enterococcus faecalis TX1322]
gi|256619186|ref|ZP_05476032.1| ribonuclease Z [Enterococcus faecalis ATCC 4200]
gi|256762622|ref|ZP_05503202.1| ribonuclease Z [Enterococcus faecalis T3]
gi|256853248|ref|ZP_05558618.1| ribonuclease Z [Enterococcus faecalis T8]
gi|256959102|ref|ZP_05563273.1| ribonuclease Z [Enterococcus faecalis DS5]
gi|257079133|ref|ZP_05573494.1| ribonuclease Z [Enterococcus faecalis JH1]
gi|257082430|ref|ZP_05576791.1| ribonuclease Z [Enterococcus faecalis E1Sol]
gi|257085062|ref|ZP_05579423.1| ribonuclease Z [Enterococcus faecalis Fly1]
gi|257086979|ref|ZP_05581340.1| ribonuclease Z [Enterococcus faecalis D6]
gi|257422490|ref|ZP_05599480.1| ribonuclease Z [Enterococcus faecalis X98]
gi|294781596|ref|ZP_06746932.1| ribonuclease Z [Enterococcus faecalis PC1.1]
gi|300861042|ref|ZP_07107129.1| ribonuclease Z [Enterococcus faecalis TUSoD Ef11]
gi|307269504|ref|ZP_07550843.1| ribonuclease Z [Enterococcus faecalis TX4248]
gi|307275847|ref|ZP_07556986.1| ribonuclease Z [Enterococcus faecalis TX2134]
gi|307289231|ref|ZP_07569187.1| ribonuclease Z [Enterococcus faecalis TX0109]
gi|307291870|ref|ZP_07571741.1| ribonuclease Z [Enterococcus faecalis TX0411]
gi|312901904|ref|ZP_07761168.1| ribonuclease Z [Enterococcus faecalis TX0470]
gi|397700002|ref|YP_006537790.1| ribonuclease Z [Enterococcus faecalis D32]
gi|421513215|ref|ZP_15959996.1| Ribonuclease Z [Enterococcus faecalis ATCC 29212]
gi|422685863|ref|ZP_16744076.1| ribonuclease Z [Enterococcus faecalis TX4000]
gi|422704599|ref|ZP_16762409.1| ribonuclease Z [Enterococcus faecalis TX1302]
gi|422706542|ref|ZP_16764240.1| ribonuclease Z [Enterococcus faecalis TX0043]
gi|422708597|ref|ZP_16766125.1| ribonuclease Z [Enterococcus faecalis TX0027]
gi|422720793|ref|ZP_16777402.1| ribonuclease Z [Enterococcus faecalis TX0017]
gi|422721952|ref|ZP_16778529.1| ribonuclease Z [Enterococcus faecalis TX2137]
gi|422731622|ref|ZP_16787980.1| ribonuclease Z [Enterococcus faecalis TX0645]
gi|422739128|ref|ZP_16794311.1| ribonuclease Z [Enterococcus faecalis TX2141]
gi|422869230|ref|ZP_16915750.1| ribonuclease Z [Enterococcus faecalis TX1467]
gi|424673093|ref|ZP_18110036.1| ribonuclease Z [Enterococcus faecalis 599]
gi|428767129|ref|YP_007153240.1| ribonuclease Z / beta-lactamase superfamily hydrolase [Enterococcus
faecalis str. Symbioflor 1]
gi|229309146|gb|EEN75133.1| ribonuclease Z [Enterococcus faecalis TX1322]
gi|256598713|gb|EEU17889.1| ribonuclease Z [Enterococcus faecalis ATCC 4200]
gi|256683873|gb|EEU23568.1| ribonuclease Z [Enterococcus faecalis T3]
gi|256711707|gb|EEU26745.1| ribonuclease Z [Enterococcus faecalis T8]
gi|256949598|gb|EEU66230.1| ribonuclease Z [Enterococcus faecalis DS5]
gi|256987163|gb|EEU74465.1| ribonuclease Z [Enterococcus faecalis JH1]
gi|256990460|gb|EEU77762.1| ribonuclease Z [Enterococcus faecalis E1Sol]
gi|256993092|gb|EEU80394.1| ribonuclease Z [Enterococcus faecalis Fly1]
gi|256995009|gb|EEU82311.1| ribonuclease Z [Enterococcus faecalis D6]
gi|257164314|gb|EEU94274.1| ribonuclease Z [Enterococcus faecalis X98]
gi|294451292|gb|EFG19758.1| ribonuclease Z [Enterococcus faecalis PC1.1]
gi|300850081|gb|EFK77831.1| ribonuclease Z [Enterococcus faecalis TUSoD Ef11]
gi|306497136|gb|EFM66682.1| ribonuclease Z [Enterococcus faecalis TX0411]
gi|306499940|gb|EFM69301.1| ribonuclease Z [Enterococcus faecalis TX0109]
gi|306507539|gb|EFM76670.1| ribonuclease Z [Enterococcus faecalis TX2134]
gi|306514124|gb|EFM82700.1| ribonuclease Z [Enterococcus faecalis TX4248]
gi|311291016|gb|EFQ69572.1| ribonuclease Z [Enterococcus faecalis TX0470]
gi|315027849|gb|EFT39781.1| ribonuclease Z [Enterococcus faecalis TX2137]
gi|315029258|gb|EFT41190.1| ribonuclease Z [Enterococcus faecalis TX4000]
gi|315031944|gb|EFT43876.1| ribonuclease Z [Enterococcus faecalis TX0017]
gi|315037105|gb|EFT49037.1| ribonuclease Z [Enterococcus faecalis TX0027]
gi|315145042|gb|EFT89058.1| ribonuclease Z [Enterococcus faecalis TX2141]
gi|315156157|gb|EFU00174.1| ribonuclease Z [Enterococcus faecalis TX0043]
gi|315162328|gb|EFU06345.1| ribonuclease Z [Enterococcus faecalis TX0645]
gi|315164140|gb|EFU08157.1| ribonuclease Z [Enterococcus faecalis TX1302]
gi|329571914|gb|EGG53592.1| ribonuclease Z [Enterococcus faecalis TX1467]
gi|397336641|gb|AFO44313.1| ribonuclease Z [Enterococcus faecalis D32]
gi|401673687|gb|EJS80064.1| Ribonuclease Z [Enterococcus faecalis ATCC 29212]
gi|402352903|gb|EJU87739.1| ribonuclease Z [Enterococcus faecalis 599]
gi|427185302|emb|CCO72526.1| ribonuclease Z / beta-lactamase superfamily hydrolase [Enterococcus
faecalis str. Symbioflor 1]
Length = 313
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 94/226 (41%), Gaps = 23/226 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I V + R+ S L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPV---GVADFVKTSLRVSQSRLSYPL 115
Query: 118 VGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GDE 168
+++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 116 KFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPL 175
Query: 169 IKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV-------DEANIDVL--RARILVMESTY 219
KLK T + AF G+ IV N L RA +LV EST+
Sbjct: 176 YGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHESTF 235
Query: 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 236 --NKHEAKMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|389845642|ref|YP_006347881.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|448616739|ref|ZP_21665449.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
gi|388242948|gb|AFK17894.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|445751394|gb|EMA02831.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
Length = 311
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 42/255 (16%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLDFNERDDALAIHGPP 92
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
K +E+L ++ H ++ T G R D + V+AF+T H S GY
Sbjct: 93 GSKRHLEKLVHAGGYQPGFHVSVHETQPG-----NVAYRADDYEVRAFETEHRTSSVGYS 147
Query: 150 VYSVKQ-----KLKQEYLGLP----------GDEIKKLKSSGTEITYTVTTP----EVAF 190
+ + + K E LG+P G++++ + + V P +V +
Sbjct: 148 LVEDDRPGRFNREKAEELGVPVGPAFGRLHTGEDVELEDGTVIKSEQVVGEPRPGRKVVY 207
Query: 191 TGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT ++ I++ R A +LV ++T+ D+ + E+A H+ E A +
Sbjct: 208 TGDTRP----LDSTIEIARDADLLVHDATFTDEES--ERATKTAHSTAREAARVARDADV 261
Query: 250 KAILLIHFSARHKVD 264
+ L H SAR+ +
Sbjct: 262 RRFALTHISARYAAN 276
>gi|410720670|ref|ZP_11360023.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
gi|410600381|gb|EKQ54909.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
Length = 303
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 118/266 (44%), Gaps = 47/266 (17%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYV---ATRGLYRMKPPTII 89
+ FD G R +++ + +FI+H H DH GLP + A RG R + I
Sbjct: 31 MLFDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRG--RKESLHIY 88
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGY 148
P + + VE + + + + L+ + +V E ++ + ++ T+H I +
Sbjct: 89 GPEGMIKTVENI----KNLGYYALSFPIHTYEVMEGVVLQTNEYLIECCPTHHSILN--- 141
Query: 149 VVYSVKQKLKQEY-------LGL-PGDEIKKL-KSSGTEITYTVTTPE-----------V 188
+ YSV++K ++ LGL PG + KL K E+ T+ PE +
Sbjct: 142 LAYSVEEKRSPKFLREKAIQLGLKPGPDFGKLQKGIPVELEGTLIKPEQVLGAKRKGRKI 201
Query: 189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
++GDT E + A +L+ ESTY +S +A + GH+ + A++ E
Sbjct: 202 VYSGDTKP---CPEMVQFAIHADVLIHESTY--ESAQESKALENGHSTTTHAAMIAKEAE 256
Query: 249 NKAILLIHFSARHK-VDEIRRAVDAV 273
++L H S R++ D +R+ V
Sbjct: 257 VSELILTHISTRYRDSDTLRQEASLV 282
>gi|381180848|ref|ZP_09889685.1| RNAse Z [Treponema saccharophilum DSM 2985]
gi|380767204|gb|EIC01206.1| RNAse Z [Treponema saccharophilum DSM 2985]
Length = 310
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 27/229 (11%)
Query: 58 LFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + + + + R +P I P + E VE R++ +N+
Sbjct: 60 IFISHTHADHVTGLPGIMMLSSQVDRTEPLYIYGPPKVAEYVES----SRKVLDMYINYP 115
Query: 117 LVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLPGDEI 169
++ ++ + + +++AF H GY + + + K E LG+P +
Sbjct: 116 VIVKEITAPCIVHEGDGFYIRAFPLQHTKTCVGYTLEELDRPGEFNPEKAESLGIPRGPL 175
Query: 170 KKLKSSGTEITYTVTTPEVAFTGDTMSD--------FIVDEANI----DVLRARILVMES 217
G + T+ GD M + F+ D I D +R L++
Sbjct: 176 WGRLQRGESV--TLENGRTVEPGDVMGERRSGRKFSFVTDTQYIPSIADEVRGSDLLICE 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
DDS EQA++ H + A + + +IH+S R+ E+
Sbjct: 234 GMFDDS-CAEQAKEKKHMTSRQAARIARDSNSARMAMIHYSPRYTDREL 281
>gi|422854499|ref|ZP_16901163.1| ribonuclease Z [Streptococcus sanguinis SK160]
gi|325695994|gb|EGD37885.1| ribonuclease Z [Streptococcus sanguinis SK160]
Length = 309
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTSASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKCLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
+V
Sbjct: 291 ASSV 294
>gi|417810057|ref|ZP_12456737.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
gi|335349929|gb|EGM51427.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
Length = 317
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ +
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAR 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|222445953|ref|ZP_03608468.1| hypothetical protein METSMIALI_01601 [Methanobrevibacter smithii
DSM 2375]
gi|222435518|gb|EEE42683.1| ribonuclease Z [Methanobrevibacter smithii DSM 2375]
Length = 300
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 48/254 (18%)
Query: 41 LAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVAT---RGLYRMKPPTII 89
+ FD G R L + +FISH H DHI GLP + + RG R KP TI
Sbjct: 31 MLFDCGESTQRQLIYAKISPMKISKIFISHYHGDHILGLPGLLQSLNFRG--REKPLTIY 88
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ ++ + + + + + +++ E + D ++ K+ V+ + +
Sbjct: 89 GPKGLKKVENAIYS----LGYCKFDFPIEFIEISSETILETDEYI--IKSQEVMHNVTNL 142
Query: 150 VYSVKQKLKQEY-------LGLP-GDEIKKL-KSSGTEITYTVTTPE-----------VA 189
YS+++K K + LG+P G KL E+ + PE +
Sbjct: 143 AYSIEEKKKPRFLRNKAIELGVPVGPLFGKLHNGEEVEVNGKIIKPEQVLGDARKGIKIT 202
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYV--DDSTTVEQARDYGHTHLSEIVEYAEKF 247
++GDT +E + +L+ ESTY DD ++AR+ H+ + A+
Sbjct: 203 YSGDTRP---CEEMIEFAKNSTLLIHESTYTLEDD----DKARENFHSTSQDAATIAKCS 255
Query: 248 ENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 256 NTKRLVLTHISTRY 269
>gi|341581908|ref|YP_004762400.1| ribonuclease Z [Thermococcus sp. 4557]
gi|340809566|gb|AEK72723.1| ribonuclease Z [Thermococcus sp. 4557]
Length = 314
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ FD+G R ++ L FI+H H DH GL + T L+ R KP I P
Sbjct: 32 ILFDVGEGTMRQMNTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDV-----GEEFCMRKDLFVKAFKTYHVIQSQ 146
E V+ + G D+ GE D + +FK H + +
Sbjct: 92 KYTFEFVQHFLQS---------GFFRPGFDIHVHELGETRLKFGDYEIWSFKVEHGVPAL 142
Query: 147 GYVVYSVKQKLK------QEYLGLPGDEIKKLKSSGTEITYT--------VTTP-----E 187
GYV ++ K EY G + KL+ G +I + VT P +
Sbjct: 143 GYVFREKDRRGKFLPEKLAEYGLSEGPILGKLEREG-KIEWNGRIIRLEDVTGPRRKGLK 201
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
V +TGDT + + A +L+ E+TY++ E D H+ + E E A+K
Sbjct: 202 VVYTGDTEP---AERVRLFAENADLLIHEATYLNS----EDRGDSYHSTVEEACEVAKKA 254
Query: 248 ENKAILLIHFSARHKVDE 265
+ K + L H + R+ DE
Sbjct: 255 KVKLLALFHRAFRYTYDE 272
>gi|294650579|ref|ZP_06727936.1| ribonuclease Z [Acinetobacter haemolyticus ATCC 19194]
gi|292823576|gb|EFF82422.1| ribonuclease Z [Acinetobacter haemolyticus ATCC 19194]
Length = 320
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 32/234 (13%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R P TII P + ++Q EV ++ L + L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTAPLTIIAP----KQIQQWIEVTAQLTDLHLPYPLN 116
Query: 119 GLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175
+DV E + +L ++A H + S + + + + K + L I K K+
Sbjct: 117 FIDVNEATQLLPLTDELSIQAHPLNHRVPSFAFSIIAQNTQKKLDTQALIQLGIPKGKAW 176
Query: 176 GTEITYTVTTPEVAFTGDTM--SDFIV------------DEANIDVLR-----ARILVME 216
G + F G+T+ +DFI D ++L A++L+ E
Sbjct: 177 GD----LQQGQNIQFNGETLKATDFIQLQTKRVHTIVGGDNDRPELLAQACQDAQLLIHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
STY + + H+ + E+A+ ++L HFS RH+ + ++A+
Sbjct: 233 STYTQ-AILDKVGSGPMHSSAKMVAEFAQHQNLSNLILTHFSPRHQDNTGQQAI 285
>gi|299821603|ref|ZP_07053491.1| ribonuclease Z [Listeria grayi DSM 20601]
gi|299817268|gb|EFI84504.1| ribonuclease Z [Listeria grayi DSM 20601]
Length = 343
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 36/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R + KP TI P I+E VE R+ + L++T
Sbjct: 98 IFITHMHGDHIFGLPGLLSSRSFQGKEKPITIYGPKGIQEYVESAL----RLSGTHLSYT 153
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPG-- 166
+ ++ D F V H I S GY + +KL++ +G+P
Sbjct: 154 IAFEEIEPGLLFDDDTFSVSCDLLDHGIASYGYRIVQKDKPGALYAEKLQE--IGVPPGP 211
Query: 167 --DEIKKLKSSGTEITYTVTTPE----------VAFTGDTMSDFIVDEANIDV-LRARIL 213
IKK +S E T+ + +A GDT A++++ A ++
Sbjct: 212 IFQAIKKGESVELEDGRTIDGSDYIGPSQAGKIIAIYGDTRQ----IPASLELGENADVI 267
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T+ ++ + A +Y H+ + E A+K K +++ H SAR+
Sbjct: 268 VHEATF--EAGLEKLAHEYMHSTTHQAAELAKKTGAKRLIITHISARY 313
>gi|291524005|emb|CBK89592.1| RNAse Z [Eubacterium rectale DSM 17629]
gi|291528533|emb|CBK94119.1| RNAse Z [Eubacterium rectale M104/1]
Length = 303
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 57/275 (20%)
Query: 23 EGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG-LY 81
EG IA E I F +D+ L I+H H DHI GLP + T G
Sbjct: 38 EGTQIAMKEAGINFKPIDI----------------LCITHFHADHISGLPGLLLTMGNAE 81
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE--EFCMRKDLFVKAFKT 139
R +P TII P + V L R EL + +++ E E+ + AF+
Sbjct: 82 RTEPLTIIGPKGLTRVVTAL-----RTIAPELPFEIKCIELNEQDEYFEMNGYHIHAFRV 136
Query: 140 YHVIQSQGYVV-------YSVKQKLKQEYLGLPGDEIKKLKSSGT-EITYTVTTPE---- 187
H + GY V +SV++ ++E +P L+ T E V TP+
Sbjct: 137 KHAVLCYGYSVEIKRSGRFSVERAKEKE---IPMRLWNPLQKGNTVEFEGRVYTPDMVLG 193
Query: 188 -------VAFTGDTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE 239
V + D+ + IV+ A + + + E Y + V +A+ Y H E
Sbjct: 194 PARKGIKVTYCTDSRPLEHIVEAAE----GSDLFICEGMYAEKEKIV-KAKQYKHMTFYE 248
Query: 240 IVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVP 274
+ A++ K + L HFS + RA D +P
Sbjct: 249 AADMAKRAGVKELWLTHFSP-----SLVRADDYMP 278
>gi|148653605|ref|YP_001280698.1| ribonuclease Z [Psychrobacter sp. PRwf-1]
gi|148572689|gb|ABQ94748.1| RNAse Z [Psychrobacter sp. PRwf-1]
Length = 354
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 96/249 (38%), Gaps = 50/249 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQL--------------- 101
+ I+H H DH GLP +A+ + R P T+I P I ++ +
Sbjct: 71 ICITHVHGDHCYGLPGLLASMAMSGRTAPLTLIAPKAILTLIQAVQSTTDLYLPYDIDFV 130
Query: 102 -FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQE 160
E D S N ++ L + L +K K H + S G+V+ V Q LK
Sbjct: 131 AIEDKVCADQSIANPVILQLSAAHK------LEIKIVKLSHRVASYGFVITQVVQSLKLN 184
Query: 161 YLGLPGDEIKKLKSSG------------------TEITYTVTTP-EVAFTGDTMSDFIVD 201
L I + G E TY + +V GD + ++
Sbjct: 185 THKLKKQGIAATAAWGQLQAGQDVMLEDGRKLVSVEYTYRESQQLKVVVGGDNDTPELLQ 244
Query: 202 EANIDVLRARILVMESTYVDDSTTVEQARDYG----HTHLSEIVEYAEKFENKAILLIHF 257
+A V A +L+ E+TY +R G HT I ++A+ + A++L HF
Sbjct: 245 QA---VQGANVLIHEATYTQSVRDKIMSRPDGFDPMHTTAKCIAQFAQAMQLPALILTHF 301
Query: 258 SAR-HKVDE 265
SAR H D+
Sbjct: 302 SARYHSYDD 310
>gi|357022433|ref|ZP_09084660.1| ribonuclease Z [Mycobacterium thermoresistibile ATCC 19527]
gi|356477878|gb|EHI11019.1| ribonuclease Z [Mycobacterium thermoresistibile ATCC 19527]
Length = 305
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
L ++H H DH G+P + L R+ P T P +E R+ H+ H
Sbjct: 60 LCLTHFHGDHCLGVPGVIQRLSLDRVAHPVTAHYPRSGRE-------YFARLRHACAFHE 112
Query: 117 LVGL-----DVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLPGD 167
+ L D + ++A + H I+S GY + + K G+ G
Sbjct: 113 VADLREEPVDSDGPVATGRFGTLEARRLDHSIESIGYRLTEPDGRRFDARKLAEFGVHGP 172
Query: 168 EIKKLKSSG-----------TEITYTVTTPEVAFTGDT-MSDFIVDEANIDVLRARILVM 215
+++L++ G ++++ AF DT + D + D A+ RA +LV+
Sbjct: 173 AVRRLQADGELVVDGRLVRLSDVSEPRPGQRFAFVMDTRLCDAVFDLAD----RADLLVI 228
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T++ S + AR+YGH + + A++ + ++L HFS R++
Sbjct: 229 EATFL--SADADLAREYGHLTARQAAQVADRCGVRRLVLTHFSQRYR 273
>gi|350266566|ref|YP_004877873.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349599453|gb|AEP87241.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 307
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
LV ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LVIKEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+++K G +T + P+ V +GDT + E D +LV
Sbjct: 175 QRIK-KGETVTLEDGRIINGNDFLEPPKKGRAVVLSGDTRVSDKLKELAKD---CDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ A D
Sbjct: 231 EATFAKEDRKL--AYDYFHSTTEQAAVTAKEAGAKKLILTHISARYQGDASLELQKEAAD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|323351344|ref|ZP_08087000.1| ribonuclease Z [Streptococcus sanguinis VMC66]
gi|322122568|gb|EFX94279.1| ribonuclease Z [Streptococcus sanguinis VMC66]
Length = 309
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FREFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTAASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
+V
Sbjct: 291 ASSV 294
>gi|307353806|ref|YP_003894857.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
gi|307157039|gb|ADN36419.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
Length = 308
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 40/232 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRR-----MDHS 111
+FI+H H DH GLP V T + R +P + P + E V + + R M
Sbjct: 55 VFITHWHADHYLGLPGLVQTMSFMGRKEPLYVYGPRWVSEFVRSVISISRNNLGFEMIPV 114
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGL-P 165
ELNH F ++AF T H + S GY++ ++ + K LG+ P
Sbjct: 115 ELNHG--------SFVPFSGYTIRAFSTDHGMPSLGYILCEDERPGRFDREKAISLGISP 166
Query: 166 GDEIKKL-KSSGTEI-----TYTVTTPE----------VAFTGDTMSDFIVDEANIDVLR 209
G +L + S E+ T T+ + V +TGDT +D R
Sbjct: 167 GPLFGRLQRGSPVEVEKDGRTITILPSDVMGEPRPGRKVVYTGDTRPK---SGEWMDWAR 223
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
L++ DDS E+A + H+ + A + K++ L+H S+R+
Sbjct: 224 DCDLLIHDATFDDSEQ-ERAMEVCHSTAGDAGRIASEISAKSLALVHISSRY 274
>gi|433542376|ref|ZP_20498803.1| ribonuclease Z [Brevibacillus agri BAB-2500]
gi|432186187|gb|ELK43661.1| ribonuclease Z [Brevibacillus agri BAB-2500]
Length = 301
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 35/240 (14%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEV 104
R P + + +FI+H H DH+ GL +A+R L + P + + P + + ++
Sbjct: 29 RSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPPGLDRYFRAIMDI 88
Query: 105 HRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLK------ 158
L+ +V V E +D+ V K H + S YSV +K K
Sbjct: 89 SPVHLQYPLDLCIVSEGVVYE---DEDVIVTCRKAKHRVPS---FAYSVLEKDKPGAFLV 142
Query: 159 --QEYLGLPGDEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDE 202
+ G+P + G ++ V P+ + F+GDT V+E
Sbjct: 143 ERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPGRKIVFSGDTEPCQSVEE 202
Query: 203 ANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV E+TY D E A GH+ E E A++ KA+ L HFS R++
Sbjct: 203 LAAG---ADLLVHEATYADRDK--ELAVRSGHSTAKEAAELAKRAGVKALCLTHFSPRYE 257
>gi|125718241|ref|YP_001035374.1| ribonuclease Z [Streptococcus sanguinis SK36]
gi|166991511|sp|A3CNR9.1|RNZ_STRSV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|125498158|gb|ABN44824.1| Ribonuclease Z, putative [Streptococcus sanguinis SK36]
Length = 309
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 48/250 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTNLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSV-------KQKLKQEY 161
E + +G + D F V A K H I GY V KL++
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRE-- 170
Query: 162 LGLP-GDEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDV 207
+G+P G K+K+ GT+I ++ P +A GDT A++ +
Sbjct: 171 VGVPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKIIAILGDTRK----TSASVRL 226
Query: 208 -LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKV 263
+ A +LV E+TY + AR++GH+ + E A++ K +LL H SAR +
Sbjct: 227 AVAADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDI 284
Query: 264 DEIRRAVDAV 273
++RR AV
Sbjct: 285 SQMRRDASAV 294
>gi|385815521|ref|YP_005851912.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|325125558|gb|ADY84888.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 309
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I EQ + R+ +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGI----EQFVKTSLRISKTKISYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
+ V L+ G + + V K H I S G+ + + KL E+ G
Sbjct: 115 IKFVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRIVEADKAGELLMDKL-AEFKVPNGP 173
Query: 168 EIKKLK-SSGTEITYTVTTPEVAFTGDTMSDFIV----DEANIDVLR-----ARILVMES 217
+ KLK E+ F G +V D + +R A +LV E+
Sbjct: 174 LLGKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ D++ + ARDY H+ ++ E A + L H SAR+
Sbjct: 234 TF--DASEGKLARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|320546497|ref|ZP_08040812.1| ribonuclease Z [Streptococcus equinus ATCC 9812]
gi|320448882|gb|EFW89610.1| ribonuclease Z [Streptococcus equinus ATCC 9812]
Length = 309
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++A+R + T + P I+ V + R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLDLYGPVGIRSYVLNSLRLSGARLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H ++G+ M D F V A K H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDENNLGK--IMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDAEALKAAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+KS GT+I ++ P+ + D +A++ + L A ILV E
Sbjct: 177 PLFGKIKSGQDVVLEDGTKIIAKDYISAPKKGKVVTILGDTRQTDASVRLGLGADILVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR +GH+ ++ + A++ K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARKHGHSTGTQAAQIAKEASAKCLLLNHVSAR 278
>gi|399053459|ref|ZP_10742311.1| ribonuclease Z [Brevibacillus sp. CF112]
gi|398048824|gb|EJL41290.1| ribonuclease Z [Brevibacillus sp. CF112]
Length = 319
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 35/240 (14%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEV 104
R P + + +FI+H H DH+ GL +A+R L + P + + P + + ++
Sbjct: 47 RSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPPGLDRYFRAIMDI 106
Query: 105 HRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLK------ 158
L+ +V V E +D+ V K H + S YSV +K K
Sbjct: 107 SPVHLQYPLDLCIVSEGVVYE---DEDVIVTCRKAKHRVPS---FAYSVLEKDKPGAFLV 160
Query: 159 --QEYLGLPGDEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDE 202
+ G+P + G ++ V P+ + F+GDT V+E
Sbjct: 161 ERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPGRKIVFSGDTEPCQSVEE 220
Query: 203 ANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +LV E+TY D E A GH+ E E A++ KA+ L HFS R++
Sbjct: 221 LAAG---ADLLVHEATYADRDK--ELAVRSGHSTAKEAAELAKRAGVKALCLTHFSPRYE 275
>gi|418961583|ref|ZP_13513469.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
gi|380344115|gb|EIA32462.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
Length = 317
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FI+H H DHI GLP ++++R G +M P TI P I + V +V + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLG-LPGDEIKKLK 173
V L+ V A+K H I+ GY + +++Y G L +++++ +
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIE------EKDYPGELQVEKLREAR 170
Query: 174 SSGTEITYTVTTPEVA------------FTGDTMSDFIV-------DEANIDVLR--ARI 212
I + EV F G IV N+ +L A +
Sbjct: 171 VPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDADV 230
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ + AR+Y H+ + A++ K +LL H SAR+
Sbjct: 231 LVHESTFGKGEGKL--ARNYYHSTCVQAATLAKEVGVKQLLLTHISARY 277
>gi|375362918|ref|YP_005130957.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731099|ref|ZP_16170225.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451346411|ref|YP_007445042.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
gi|371568912|emb|CCF05762.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407075253|gb|EKE48240.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850169|gb|AGF27161.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
Length = 308
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E + F V A H +++ GY V +++ +E PG
Sbjct: 115 LTVHEIEEGTVFEDEHFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK G +T + +P+ VAF+GDT + V E A +LV
Sbjct: 175 QKLK-KGETVTLDDGRIINGRDFLESPKKGRIVAFSGDTRASERVTEL---ARNADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|238923242|ref|YP_002936757.1| ribonuclease Z [Eubacterium rectale ATCC 33656]
gi|259494133|sp|C4ZFN9.1|RNZ_EUBR3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|238874916|gb|ACR74623.1| ribonuclease Z [Eubacterium rectale ATCC 33656]
Length = 303
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 57/275 (20%)
Query: 23 EGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRG-LY 81
EG IA E I F +D+ L I+H H DHI GLP + T G
Sbjct: 38 EGTQIAMKEAGINFKPIDI----------------LCITHFHADHISGLPGLLLTMGNAE 81
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE--EFCMRKDLFVKAFKT 139
R +P TII P + V L R EL + +++ E E+ + AF+
Sbjct: 82 RTEPLTIIGPKGLTRVVTAL-----RTIAPELPFEIKCIELNEQDEYFEMNGYHIHAFRV 136
Query: 140 YHVIQSQGYVV-------YSVKQKLKQEYLGLPGDEIKKLKSSGT-EITYTVTTPE---- 187
H + GY V +SV++ ++E +P L+ T E V TP+
Sbjct: 137 KHAVLCYGYSVEIKRSGRFSVERANEKE---IPMRLWNPLQKGNTVEFEGRVYTPDMVLG 193
Query: 188 -------VAFTGDTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSE 239
V + D+ + IV+ A + + + E Y + V +A+ Y H E
Sbjct: 194 PARKGIKVTYCTDSRPLEHIVEAAE----GSDLFICEGMYAEKEKIV-KAKQYKHMTFYE 248
Query: 240 IVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVP 274
+ A++ K + L HFS + RA D +P
Sbjct: 249 AADMAKRAGVKELWLTHFSP-----SLVRADDYMP 278
>gi|257875792|ref|ZP_05655445.1| ribonuclease Z [Enterococcus casseliflavus EC20]
gi|257809958|gb|EEV38778.1| ribonuclease Z [Enterococcus casseliflavus EC20]
Length = 318
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 31/236 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P IK V+ + R+ +++++
Sbjct: 59 IFITHLHGDHIYGLPGLISSRSFQGGDTPLEIYGPKGIKAYVQTVL----RISQTKVSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEY-----LGL-PGDE 168
L ++ EE + KD V + H I S GY + + + + LGL PG
Sbjct: 115 LHFFEIEEEGILFKDQQFEVSCLRLDHGIDSFGYRIVEASHQGELQVQALLELGLKPGPL 174
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLRARILVM 215
+LK G +I + VA GDT A + A +LV
Sbjct: 175 FGRLKKGEVVTLDDGRQINGADFLGQAKKGRIVAILGDTRK---CQNAVLLAEDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
EST+ + + AR Y H+ + E A++ + K +LL H SAR+ +I V+
Sbjct: 232 ESTFNKEEAKL--ARAYFHSTTRQAAEVAQEAQAKRLLLTHISARYVGKDITNLVN 285
>gi|253576741|ref|ZP_04854068.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843951|gb|EES71972.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
Length = 312
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 45 IGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFE 103
I R P + ++FI+H H DH+ GLP +++R P +I P +K+ VE
Sbjct: 46 ILRSPLKLSKLEYIFITHLHGDHLFGLPGLISSRAYQGGDTPLVIYGPKGLKKFVETALS 105
Query: 104 VHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQ- 159
+ S +N+ L ++ D F V+A H I S GY V + KL
Sbjct: 106 ----LSESRINYKLELVEHQGGVLFEDDSFRVEAALLEHRIDSYGYRVIEKDLPGKLDSA 161
Query: 160 --EYLGL-PGDEIKKLKSSGTEITYTVTT---------PEVAFTGDTMSDFIVDEANIDV 207
E G+ PG KLK + + T P+ + D E+ + +
Sbjct: 162 VLERCGIRPGPLYGKLKRGESVVAPNGETVHAKDVLGMPKAGRIVTILGDTRPCESVLTL 221
Query: 208 LR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
+ A +LV E+T++ + + A DY H+ + A++ + +LL HFS+R+K D+
Sbjct: 222 AQNADMLVHEATFLHE--LAKTAHDYHHSTAKQAAAAAKEAGVQQLLLTHFSSRYKSDD 278
>gi|257866158|ref|ZP_05645811.1| ribonuclease Z [Enterococcus casseliflavus EC30]
gi|257872488|ref|ZP_05652141.1| ribonuclease Z [Enterococcus casseliflavus EC10]
gi|257800092|gb|EEV29144.1| ribonuclease Z [Enterococcus casseliflavus EC30]
gi|257806652|gb|EEV35474.1| ribonuclease Z [Enterococcus casseliflavus EC10]
Length = 318
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 31/236 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P I P IK V+ + R+ +++++
Sbjct: 59 IFITHLHGDHIYGLPGLISSRSFQGGDTPIEIYGPKGIKAYVQTVL----RISQTKVSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEY-----LGL-PGDE 168
L ++ EE + KD V + H I S GY + + + + LGL PG
Sbjct: 115 LHFFEIEEEGILFKDQQFEVSCLRLDHGIDSFGYRIVEASHQGELQVQALLELGLKPGPL 174
Query: 169 IKKLKSS-------GTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLRARILVM 215
+LK G +I + VA GDT A + A +LV
Sbjct: 175 FGRLKKGEVVTLDDGRQINGADFLGQAKKGRIVAILGDTRK---CQNAVLLAEDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVD 271
EST+ + + AR Y H+ + E A++ + K +LL H SAR+ +I V+
Sbjct: 232 ESTFNKEEAKL--ARAYFHSTTRQAAEVAQEAQAKRLLLTHISARYVGKDITNLVN 285
>gi|49478558|ref|YP_038206.1| ribonuclease Z [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|118479338|ref|YP_896489.1| ribonuclease Z [Bacillus thuringiensis str. Al Hakam]
gi|196038730|ref|ZP_03106038.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|196047233|ref|ZP_03114449.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|225866126|ref|YP_002751504.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228916781|ref|ZP_04080346.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229093204|ref|ZP_04224322.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|229186388|ref|ZP_04313552.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|301055637|ref|YP_003793848.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|376268042|ref|YP_005120754.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|423550109|ref|ZP_17526436.1| ribonuclease Z [Bacillus cereus ISP3191]
gi|56749430|sp|Q6HE20.1|RNZ_BACHK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991094|sp|A0RID9.1|RNZ_BACAH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808609|sp|C1ER14.1|RNZ_BACC3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49330114|gb|AAT60760.1| possible metallo-beta-lactamase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418563|gb|ABK86982.1| RNAse Z [Bacillus thuringiensis str. Al Hakam]
gi|196021982|gb|EDX60673.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|196030453|gb|EDX69052.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|225787461|gb|ACO27678.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228597015|gb|EEK54671.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|228690178|gb|EEL43972.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|228842968|gb|EEM88051.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|300377806|gb|ADK06710.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|364513842|gb|AEW57241.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|401189725|gb|EJQ96775.1| ribonuclease Z [Bacillus cereus ISP3191]
Length = 307
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGNDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|440754713|ref|ZP_20933915.1| beta-lactamase domain protein [Microcystis aeruginosa TAIHU98]
gi|440174919|gb|ELP54288.1| beta-lactamase domain protein [Microcystis aeruginosa TAIHU98]
Length = 254
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPSCIKEDVEQLFEVHRRMDHSELNHT 116
LF SH+H DHI G P ++ R I +PS ++Q +H +M H
Sbjct: 33 LFFSHSHWDHIQGFPFFIP--AFIRGNTFKIYGIPSANGATIKQ--TLHDQMSHPNFP-- 86
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIK-KLKSS 175
V L + MR DL + Y++ G +Y ++ L PG+ + ++
Sbjct: 87 -VPLQI-----MRADL-----EFYNL--EMGKTLYCADFTVETRPLNHPGEAVGYRVNWQ 133
Query: 176 GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD--YG 233
G Y T + D + D V +A ++++++TY D+ Q +G
Sbjct: 134 GLSAAYITDT-------EHFPDRLDDNVLALVRQADVMIIDATYTDEEYNDPQYSKVGWG 186
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
H+ + V+ A+ + K ++L H H D + R
Sbjct: 187 HSTWQQAVKIAQAAQVKQLVLFHHDPAHNDDFLDR 221
>gi|228909974|ref|ZP_04073795.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
gi|228849809|gb|EEM94642.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
Length = 307
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFCVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFA--AADEQQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|409100110|ref|ZP_11220134.1| beta-lactamase domain-containing protein [Pedobacter agri PB92]
Length = 301
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMD 109
+A +++FISH H DH GL +++ L R+KP I P + E +E F+
Sbjct: 51 KAARIDYIFISHLHGDHYFGLIGLLSSLHLNGRVKPMQIFGPKPLLEILEIQFKYSDTTL 110
Query: 110 HSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL------- 162
L V D + +DL VK H I + G++ +QK +Q L
Sbjct: 111 RYPLEFFPVEADESRQIFENQDLIVKTVVLNHRIPTTGFI---FQQKNRQRKLIKEKTDD 167
Query: 163 ---------------GLPGDEIKKLKSSGTEITYTVTTP-EVAFTGDTMSDFIVDEANID 206
LP EI LKS TTP ++ + SD DE +
Sbjct: 168 IPMVYYTALKKGMDVELPTGEI--LKSED------YTTPADLPRSYAYCSDTKFDERYFE 219
Query: 207 VLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK--- 262
++ L E+T++ D +++A + HT + E A+ + +L+ HFS+R+K
Sbjct: 220 TIKGCDTLYHEATFMHD--LLDRANETHHTTALQAGEIAKINGIRKLLIGHFSSRYKTLQ 277
Query: 263 --VDEIRRAVDAVPAPLAGRVFAL 284
++E + A D + GR F L
Sbjct: 278 MLLEEAQSAFDNTDLAVEGRTFQL 301
>gi|336477299|ref|YP_004616440.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
gi|335930680|gb|AEH61221.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
Length = 304
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVH 105
R + +S +FI+H H DHI GLP + T R KP I P+ +KE +
Sbjct: 46 RARTGMMSLTSVFITHFHADHILGLPGLIQTMSFQGRTKPLVIYGPAKVKE----FACIL 101
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY--SVKQKLKQEY- 161
+ + L + ++V +++D + VK KT H + S GY + S K ++
Sbjct: 102 SNIGYYNLKFEIRAVEVHPGDIIKRDGYSVKILKTEHSVPSVGYALVEDSRPGKFNRDRA 161
Query: 162 --LGLP-GDEIKKLKSS-GTEITYTVTTPE-----------VAFTGDTMSDFIVDEANID 206
LG+P G KL++ E+ V +P+ + ++GDT D+
Sbjct: 162 IELGVPVGPLFSKLQNGIPVEVEGKVISPDEVIGPSRSGRTIVYSGDTRPS---DDVRRI 218
Query: 207 VLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
A +L+ E+T D+ ++ A + HT E + A + E K ++L H S+R+ D
Sbjct: 219 SKGADLLIHEATLADEK--LDWAIESMHTTAGEAAKLAAEAEVKKLILTHISSRYTED 274
>gi|30264217|ref|NP_846594.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47529660|ref|YP_021009.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49187047|ref|YP_030299.1| ribonuclease Z [Bacillus anthracis str. Sterne]
gi|65321533|ref|ZP_00394492.1| COG1234: Metal-dependent hydrolases of the beta-lactamase
superfamily III [Bacillus anthracis str. A2012]
gi|165871127|ref|ZP_02215777.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167633571|ref|ZP_02391895.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|167639504|ref|ZP_02397775.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|170687270|ref|ZP_02878488.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|170705861|ref|ZP_02896324.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|177652639|ref|ZP_02935055.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190566047|ref|ZP_03018966.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|196034932|ref|ZP_03102339.1| ribonuclease Z [Bacillus cereus W]
gi|218905280|ref|YP_002453114.1| ribonuclease Z [Bacillus cereus AH820]
gi|227816920|ref|YP_002816929.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228929191|ref|ZP_04092218.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935464|ref|ZP_04098282.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947861|ref|ZP_04110148.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229123664|ref|ZP_04252859.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|229600192|ref|YP_002868439.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|254683907|ref|ZP_05147767.1| ribonuclease Z [Bacillus anthracis str. CNEVA-9066]
gi|254721742|ref|ZP_05183531.1| ribonuclease Z [Bacillus anthracis str. A1055]
gi|254736255|ref|ZP_05193961.1| ribonuclease Z [Bacillus anthracis str. Western North America
USA6153]
gi|254744144|ref|ZP_05201827.1| ribonuclease Z [Bacillus anthracis str. Kruger B]
gi|254754073|ref|ZP_05206108.1| ribonuclease Z [Bacillus anthracis str. Vollum]
gi|254758234|ref|ZP_05210261.1| ribonuclease Z [Bacillus anthracis str. Australia 94]
gi|386738036|ref|YP_006211217.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|421506406|ref|ZP_15953329.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|421638225|ref|ZP_16078821.1| ribonuclease Z [Bacillus anthracis str. BF1]
gi|41017543|sp|Q81M88.1|RNZ_BACAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808605|sp|C3P7S4.1|RNZ_BACAA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808606|sp|C3LJR8.1|RNZ_BACAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808607|sp|B7JLZ5.1|RNZ_BACC0 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|30258862|gb|AAP28080.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47504808|gb|AAT33484.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49180974|gb|AAT56350.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|164713046|gb|EDR18573.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167512563|gb|EDR87938.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|167530977|gb|EDR93664.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|170129401|gb|EDS98265.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|170668887|gb|EDT19632.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|172081974|gb|EDT67042.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190562966|gb|EDV16932.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|195992471|gb|EDX56432.1| ribonuclease Z [Bacillus cereus W]
gi|218539378|gb|ACK91776.1| ribonuclease Z [Bacillus cereus AH820]
gi|227005393|gb|ACP15136.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228659799|gb|EEL15444.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|228811848|gb|EEM58182.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824216|gb|EEM70030.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830481|gb|EEM76091.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|229264600|gb|ACQ46237.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|384387888|gb|AFH85549.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|401823399|gb|EJT22546.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|403394651|gb|EJY91891.1| ribonuclease Z [Bacillus anthracis str. BF1]
Length = 307
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D V+ + H I+ GY + +++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI--IEKDIQGALLVDKLLEIGVKPG 172
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PLFKRLKDGEVVELENGTILNGNDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|93279549|pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX
Length = 320
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMAGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D ++V
Sbjct: 175 QKIKK-GETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVMVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A DY H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDRKL--AYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|422878575|ref|ZP_16925041.1| ribonuclease Z [Streptococcus sanguinis SK1059]
gi|422928425|ref|ZP_16961367.1| ribonuclease Z [Streptococcus sanguinis ATCC 29667]
gi|422931401|ref|ZP_16964332.1| ribonuclease Z [Streptococcus sanguinis SK340]
gi|332367001|gb|EGJ44741.1| ribonuclease Z [Streptococcus sanguinis SK1059]
gi|339616749|gb|EGQ21390.1| ribonuclease Z [Streptococcus sanguinis ATCC 29667]
gi|339619701|gb|EGQ24276.1| ribonuclease Z [Streptococcus sanguinis SK340]
Length = 309
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTAASVCLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|315426519|dbj|BAJ48150.1| ribonuclease Z [Candidatus Caldiarchaeum subterraneum]
gi|343485271|dbj|BAJ50925.1| ribonuclease Z [Candidatus Caldiarchaeum subterraneum]
Length = 301
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH+ G+P + T + R K I P V+ L + LN T
Sbjct: 56 IFLTHLHGDHVLGVPGLLFTLSMNGREKEVNIYGPKNTATLVKALTLPYL----GTLNFT 111
Query: 117 LVGLDVGEEFCMRKD-LFVKAFKTYHVIQSQGYVVYSVKQKLKQ-----EYLGLPGDEIK 170
+ ++ + D + V AFKT H S GY+V + K E LG+P +
Sbjct: 112 INIHELSPTDTVHIDTVTVTAFKTDHTTNSLGYIVKEEDRPGKMRVDFLESLGVPRGPLW 171
Query: 171 KLKSSGTEITY--TVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
G I Y V TPE + +TGDT V +A D A +L+ ++
Sbjct: 172 GQLQRGNSIKYGGRVITPEEALGPPRPGRKIVYTGDTRPCEEVVKAAQD---ADVLIHDA 228
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
T+ DS+ E+A + GH+ + + A + K + L H S R++ E
Sbjct: 229 TF--DSSLREKAVEQGHSTAEDAAKTAAEASAKRLYLFHISPRYEDPE 274
>gi|386758976|ref|YP_006232192.1| ribonuclease Z [Bacillus sp. JS]
gi|384932258|gb|AFI28936.1| ribonuclease Z [Bacillus sp. JS]
Length = 307
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY------VVYSVKQKLKQEYLGLPGDEI 169
L ++ E D F V A H +++ GY V ++K + +E PG
Sbjct: 115 LAVQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVTGALKADVLKEMNIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ V F+GDT + E D +LV
Sbjct: 175 QKIK-KGETVTLEDGRIINGSDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + + A Y H+ + A++ K ++L H SAR++ D E+++ AVD
Sbjct: 231 EATFAKEDHKL--AFGYYHSTTEQAAVTAKEAGAKQLILTHISARYQGDASLELQKEAVD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|88602980|ref|YP_503158.1| ribonuclease Z [Methanospirillum hungatei JF-1]
gi|88188442|gb|ABD41439.1| RNAse Z [Methanospirillum hungatei JF-1]
Length = 316
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 115/280 (41%), Gaps = 63/280 (22%)
Query: 26 SIAGHETCII--FPSLDLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVA 76
+I+ + CI+ + S DL FD G R + S ++ISH H DH G+ +
Sbjct: 22 TISRNLPCILLKWGSHDLIFDCGEGAQRQMMKARAGFSPEVIYISHWHADHFLGVIGLLQ 81
Query: 77 TRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-- 133
T R +P I+ P C+ E V D L T + V + DL
Sbjct: 82 TMSFNGREQPLMIVGPDCVHEMVN---------DIKGLCRTRLSFPVESQKVRAGDLLIY 132
Query: 134 ----VKAFKTYHVIQSQGYVVYSVKQ--KLKQEY---LGL-PGDEIKKLKSSGTEITYTV 183
++ F H I GY+ + + +E LG+ PG KL+ G+ +T TV
Sbjct: 133 EGYSIRVFAADHGIPGVGYIFEENMRPGRFNRERAIELGIRPGPLFGKLQ-RGSSVTITV 191
Query: 184 ------TTPE-----------VAFTGDT---MSDF--IVDEANIDVLRARILVMESTYVD 221
TPE V +TGDT +S+ I D+A+ +L+ ++T+
Sbjct: 192 DGEERIITPEMVMGPMRPGRKVIYTGDTRPVLSELADIGDDAD-------LLIHDATF-- 242
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
D E+A ++ H +E A + + L HFS R+
Sbjct: 243 DHQEEERAIEFMHATAAEAGMVAHTLKAHRLALFHFSTRY 282
>gi|426253832|ref|XP_004020595.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Ovis
aries]
gi|426253834|ref|XP_004020596.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Ovis
aries]
Length = 363
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 69/278 (24%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPAGLRDFICRTMDLSHTELVFP 117
Query: 90 ------VPS---CIKEDVEQLFEVHRR-MDHSELNHTLVGLDVGEEFCMRKD---LFVKA 136
VP+ C E++++ +V++ E + LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKESVQVNKTDSPPQEGEGRTIMLDSEESSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD +VD+ + + A +L+ E+T D T +++A+++GH
Sbjct: 236 QDVLKKPIVGRKICILGDCSG--VVDDGGVKLCFEADLLIHEATL--DDTQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+ +A+ K ++L HFS R+K + R +A
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAREGEA 329
>gi|429111046|ref|ZP_19172816.1| Ribonuclease Z [Cronobacter malonaticus 507]
gi|426312203|emb|CCJ98929.1| Ribonuclease Z [Cronobacter malonaticus 507]
Length = 324
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P I P I E VE R+ S ++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTL----RLSGSWTSYP 134
Query: 117 LVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L ++ E + +L V A+ H ++ GY + + +LK + PG
Sbjct: 135 LHVHEITEGQLSDDGELIVTAYPLTHPVECYGYRIEEHDKPGALDAARLKAAGV-TPGPL 193
Query: 169 IKKLKSSGTEITYTVTTPE------------------VAFTGDTMSDFIVDEANIDVLRA 210
++LK TVT P+ +A GDT DV
Sbjct: 194 FQQLKRG-----ETVTLPDGRTVCGADYLSAPRPGKKIAIFGDTSPTPQAVNLARDV--- 245
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
++V E+T ++ E+A GH+ + A K +L+ HFS+R+ +E +R
Sbjct: 246 DVMVHETTL--EAAMAEKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYSAEECQR 301
>gi|229174819|ref|ZP_04302340.1| Ribonuclease Z [Bacillus cereus MM3]
gi|423457672|ref|ZP_17434469.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
gi|228608651|gb|EEK65952.1| Ribonuclease Z [Bacillus cereus MM3]
gi|401148056|gb|EJQ55549.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
Length = 307
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PLFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|283798422|ref|ZP_06347575.1| ribonuclease Z [Clostridium sp. M62/1]
gi|291073826|gb|EFE11190.1| ribonuclease Z [Clostridium sp. M62/1]
gi|295090786|emb|CBK76893.1| RNAse Z [Clostridium cf. saccharolyticum K10]
Length = 304
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 36/226 (15%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + +H H DHI GLP + T G R +P T+I P ++ V L RM EL
Sbjct: 55 DIICFTHYHADHISGLPGLLLTMGNAERTEPVTVIGPKGLERVVGAL-----RMIAPELP 109
Query: 115 HTLVGLDVG---EEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGL 164
L +++ E+F + + A++ H + GY V + V++ QE +
Sbjct: 110 FELRFIELSEPREQFSI-GPYVIDAYRVQHNVICYGYAVSIPRKGKFDVERARAQE---I 165
Query: 165 PGDEIKKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARI 212
P +L+ T E + TPE V + DT ++ E D A +
Sbjct: 166 PQKFWSRLQKGETIEDEGRILTPEMVLGPKRRGIKVTYCTDTRPVPVIAEYAKD---ADL 222
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
+ E Y +D +AR+Y H E A + + + + L H+S
Sbjct: 223 FICEGMYGEDGKEA-KAREYKHMTFQEAAGLAREAQPREMWLTHYS 267
>gi|430749963|ref|YP_007212871.1| ribonuclease Z [Thermobacillus composti KWC4]
gi|430733928|gb|AGA57873.1| ribonuclease Z [Thermobacillus composti KWC4]
Length = 312
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 32/250 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH+ GLP + +R P T+ P I+ +E F + H EL
Sbjct: 59 IFVTHLHGDHVFGLPGLLGSRSSMGCDAPLTLHGPRGIRHWLETTFSITGAHVHYELEIR 118
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGLPGDEIK 170
+ D G D F VKA H I GY + + K LG+P +
Sbjct: 119 EIDGDGG--VVHEDDQFTVKAAPLNHRIACYGYRIEERPRPGRLDAAKLAELGVPQGPLY 176
Query: 171 KLKSSGTEITYT---------VTTPEV-----AFTGDTMSDFIVDEANIDVLRARILVME 216
G + T V P + A GDT D A A ++V E
Sbjct: 177 AQLKRGEDATLQDGRVIRAADVVGPPIPGRVIAILGDTTP---CDAAIRLAEGADLVVHE 233
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR----AVDA 272
+T+ ++ +A +YGH+ +E A +LL HFS R++ +++ R A +
Sbjct: 234 ATF--EAALAGKAAEYGHSTTAEAARTARDARAARLLLTHFSGRYRDEDLPRLEAEAREV 291
Query: 273 VPAPLAGRVF 282
P+ A R F
Sbjct: 292 FPSSAAARDF 301
>gi|327285222|ref|XP_003227333.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Anolis
carolinensis]
Length = 364
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 87/277 (31%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-----------------------YRMKP--------P 86
+FI+H H DH GLP + T L +R+ P
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSDPAGNKLPVDIYGPLGLRSFLWRIMALSHSQLTFP 117
Query: 87 TII---VPS---CIKEDVEQLFEVHRR-------------MDHSELNHTLVGLDVGEEFC 127
++ VP+ C +E+ ++L V R +D ++ ++ LV E+F
Sbjct: 118 YVVHELVPTPEQCPEEERKELSFVDRDAALPEGTPGRTVYLDPTDNSYPLVD---NEQFV 174
Query: 128 MRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PGDEIKKLKS----- 174
M KAF+ +H I S G++V QKLK+ LG+ PG KLK
Sbjct: 175 M------KAFRLFHRIPSFGFLVEEKPRPGRLNVQKLKE--LGVQPGPMYGKLKEGITVV 226
Query: 175 --SGTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTT 225
+GT I+ + E + GD S +V E + A ILV E+T D +
Sbjct: 227 LENGTTISPSDVLEEPLPGRKICILGDCCS--MVGEGAASLCHGADILVHEATL--DDSQ 282
Query: 226 VEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+++AR++GH+ E+A++ + K ++L H S R+K
Sbjct: 283 MDKAREHGHSTPKMAAEFAKRCQVKRLVLSHLSQRYK 319
>gi|157144795|ref|YP_001452114.1| ribonuclease Z [Citrobacter koseri ATCC BAA-895]
gi|166991097|sp|A8ADW5.1|RBN_CITK8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|157082000|gb|ABV11678.1| hypothetical protein CKO_00522 [Citrobacter koseri ATCC BAA-895]
Length = 305
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 49/250 (19%)
Query: 39 LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKED 97
L+ AF+ G+ + +FISH H DH+ GLP + +R + +P TI P I+E
Sbjct: 48 LNTAFNPGKL-------DRIFISHLHGDHLFGLPGLLCSRSMAGNAQPLTIYGPKGIREF 100
Query: 98 VEQLFEVHRRMDHSELNHTL--VGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVVYSV 153
E R+ S ++ L V + GE +RK V AF H ++ GY +
Sbjct: 101 TETAL----RLSGSWTDYPLEIVEITAGEILNDGLRK---VTAFALEHPLECYGYRIEEH 153
Query: 154 KQKLKQEYLGL------PGDEIKKLKSSGTEITYT------------VTTP--EVAFTGD 193
+ + L PG + LK +G +T TP VA GD
Sbjct: 154 DKPGALDASALKAAGVKPGPLFQDLK-AGKTVTLNDGRVINGADFLAPATPGKSVAIFGD 212
Query: 194 T--MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
T + I +DV +V E+T D++ E+A GH+ + + A E
Sbjct: 213 TAPCASAITLAKGVDV-----MVHEATL--DTSMEEKANSRGHSSTRQAAQLAHNAEVGQ 265
Query: 252 ILLIHFSARH 261
+++ H S+R+
Sbjct: 266 LIITHVSSRY 275
>gi|448304167|ref|ZP_21494109.1| ribonuclease Z [Natronorubrum sulfidifaciens JCM 14089]
gi|445591452|gb|ELY45654.1| ribonuclease Z [Natronorubrum sulfidifaciens JCM 14089]
Length = 308
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 40/252 (15%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P I P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSISHLFVTHLHGDHVLGIPGLLQTMAFNDREEPLAIHTP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ ++ L + VG + R D + V+ F T H +S GY +
Sbjct: 92 HGTRRQIQSLVNALGNRPSFPVRVNEVG---DGDVAYRADEYEVRVFGTDHDTRSVGYAL 148
Query: 151 YSVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAF 190
+K + E LG+P G + KL +G + TV PE + +
Sbjct: 149 VEDDRKGRFDRDHAEDLGVPVGPKFSKLH-AGESVELEDGTVVEPEQVVGEPRPGRSIVY 207
Query: 191 TGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT A I+V +L+ ++T+ +D ++A H+ + E A +
Sbjct: 208 TGDTRP----TTATIEVTDEPELLIHDATFAEDR--ADRAGATAHSTARQAAEIANRAGA 261
Query: 250 KAILLIHFSARH 261
+ L+H S+R+
Sbjct: 262 DRLALMHLSSRY 273
>gi|422882523|ref|ZP_16928979.1| ribonuclease Z [Streptococcus sanguinis SK355]
gi|332359391|gb|EGJ37211.1| ribonuclease Z [Streptococcus sanguinis SK355]
Length = 309
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GL 164
E + +G + V A K H I GY V ++ L + L G+
Sbjct: 119 FHEFDENSLG-----KILETNKFTVYAEKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGV 173
Query: 165 P-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARIL 213
P G K+K+ GT+I ++ P T + D A++ + + A +L
Sbjct: 174 PFGPLFGKVKNGQDIILEDGTKIIAADYISAPRPGKTIAILGDTRKTAASVRLAVAADVL 233
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAV 270
V E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 234 VHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRDA 291
Query: 271 DAV 273
A+
Sbjct: 292 SAI 294
>gi|423604221|ref|ZP_17580114.1| ribonuclease Z [Bacillus cereus VD102]
gi|401245907|gb|EJR52260.1| ribonuclease Z [Bacillus cereus VD102]
Length = 307
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAKDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|313890135|ref|ZP_07823770.1| ribonuclease Z [Streptococcus pseudoporcinus SPIN 20026]
gi|416852160|ref|ZP_11909305.1| ribonuclease Z [Streptococcus pseudoporcinus LQ 940-04]
gi|313121496|gb|EFR44600.1| ribonuclease Z [Streptococcus pseudoporcinus SPIN 20026]
gi|356739649|gb|EHI64881.1| ribonuclease Z [Streptococcus pseudoporcinus LQ 940-04]
Length = 310
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 31/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V+ V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQASEEQTDIAIFGPLGIKSFVQNSLSVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-GD 167
H L +G+ F K V A + H I GY V ++ L E L G+P G
Sbjct: 119 YHELTEDKLGKIFETDK-FTVYAERLAHTIFCLGYRVVQKDLEGTLDAEALKEAGVPFGP 177
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARIL 213
K+K +G ++T ++ P+ V GDT D A +L
Sbjct: 178 LFGKIK-NGQDVTLEDGRLIHAQDFISAPKKGKIVTILGDTRKSLASQRLAKD---ADVL 233
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
V ESTY + AR++GH+ + + A K +LL H SAR
Sbjct: 234 VHESTYGKGDDKI--ARNHGHSTNIQAAQIARDAGVKRLLLNHVSAR 278
>gi|423401010|ref|ZP_17378183.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|423478286|ref|ZP_17455001.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
gi|401654000|gb|EJS71543.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|402428448|gb|EJV60545.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
Length = 307
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PLFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|212223398|ref|YP_002306634.1| ribonuclease Z [Thermococcus onnurineus NA1]
gi|254808680|sp|B6YT50.1|RNZ_THEON RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|212008355|gb|ACJ15737.1| ribonuclease Z [Thermococcus onnurineus NA1]
Length = 311
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 103/262 (39%), Gaps = 58/262 (22%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ FD+G R +S L FI+H H DH GL + T L+ R KP I P
Sbjct: 32 ILFDVGEGTMRQMSTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWNREKPLHIYGP 91
Query: 92 SCIKEDVEQL---------FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
++ F++H ++GE D + +FK H
Sbjct: 92 KYTFRFIQNFLNSGFFRPGFDIHVH-------------EIGEVRLKFGDYEIWSFKVEHG 138
Query: 143 IQSQGYVVYSVKQKLK------QEYLGLPGDEIKKLKSSGTEITYT--------VTTP-- 186
I + GYV ++ K EY G + KL+ G +I + VT P
Sbjct: 139 IPALGYVFKEKDKRGKFLPEKLAEYGLSEGPILGKLEKQG-QIEWNGRIIRLEDVTGPRR 197
Query: 187 ---EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+V +TGDT + + A +L+ E+TY+ E D HT + E E
Sbjct: 198 KGVKVVYTGDTEP---CERTRLFAENADLLIHEATYLRP----EDRGDSYHTTVGEACEI 250
Query: 244 AEKFENKAILLIHFSARHKVDE 265
A+K + K + L H + R+ DE
Sbjct: 251 AKKAKVKLLALFHRAFRYTYDE 272
>gi|452748385|ref|ZP_21948165.1| ribonuclease Z [Pseudomonas stutzeri NF13]
gi|452007791|gb|EME00044.1| ribonuclease Z [Pseudomonas stutzeri NF13]
Length = 324
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 38/245 (15%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-HTL 117
I+H H DH GLP +A+ G+ R TII P I+ V E+ + +L H +
Sbjct: 60 ITHVHGDHCYGLPGLLASAGMMGRKAALTIIAPHGIETWVRATLEMSQSWLGYDLEFHAV 119
Query: 118 VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIKKL 172
L MR ++A H + GY + + E G+P +
Sbjct: 120 ESLGEWRSPNMR----IEATALSHRVPCYGYSFTEARPDPRLDIDRLERDGVPRGPLWGQ 175
Query: 173 KSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTY 219
+ G ++ +++ + GD ++ +A A++LV E+TY
Sbjct: 176 LARGFDVEHEGRILRSDDYLSFSRAPQRIVIGGDNDRPELLADA---CRGAQLLVHEATY 232
Query: 220 VDDSTTVEQARD-YGHTHLSEIVEYAEKFENKAILLIHFSAR--------HKVDEIRRAV 270
+ AR+ +GH+ + + +A+ + ++L HFSAR H +D++R
Sbjct: 233 TE--AVANDARNGFGHSTAASVARFAQTVGLQNLVLTHFSARYQKNAGRGHSIDDLRAEA 290
Query: 271 DAVPA 275
A+ A
Sbjct: 291 SALYA 295
>gi|440759280|ref|ZP_20938426.1| Ribonuclease Z [Pantoea agglomerans 299R]
gi|436426983|gb|ELP24674.1| Ribonuclease Z [Pantoea agglomerans 299R]
Length = 303
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K VE + +++ +
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISG--SYTDYPLS 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP-GD 167
LV ++ G + + F + A+ H + GY + + +LK E G+P G
Sbjct: 116 LVEIEAG--WTLDDGEFRISAWPLSHPVACFGYRIEQHDKPGLLDAARLKAE--GVPRGP 171
Query: 168 EIKKLKS------------SGTEITYTVTT-PEVAFTGDTMSDFIVDEANIDVLRARILV 214
++LK +G + T ++A GDT + + DV ++V
Sbjct: 172 WFQQLKQGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTDVALQMAADV---DLMV 228
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ +E+A GH+ + + A++ K ++ HFS+R+ ++ R
Sbjct: 229 HETTL--EAAMMEKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSR 280
>gi|419707394|ref|ZP_14234879.1| Ribonuclease Z (RNase Z) [Streptococcus salivarius PS4]
gi|383282924|gb|EIC80903.1| Ribonuclease Z (RNase Z) [Streptococcus salivarius PS4]
Length = 309
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 34/241 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T + P IK+ V R+
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYRVH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
+E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FTEIDEHKLGL------VMENDKFAVYADKLDHTIFCVGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ +GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLENGTKIIAKDYISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI-RRAVD 271
LV ESTY + A+ +GH+ + + A+ K +LL H SAR +I R A D
Sbjct: 233 LVHESTYGKGDENI--AKSHGHSTNIQAAQVAKDASAKRLLLNHVSARFLGRDIGRMAAD 290
Query: 272 A 272
A
Sbjct: 291 A 291
>gi|304385117|ref|ZP_07367463.1| ribonuclease Z [Pediococcus acidilactici DSM 20284]
gi|427439818|ref|ZP_18924382.1| ribonuclease Z [Pediococcus lolii NGRI 0510Q]
gi|304329311|gb|EFL96531.1| ribonuclease Z [Pediococcus acidilactici DSM 20284]
gi|425787950|dbj|GAC45170.1| ribonuclease Z [Pediococcus lolii NGRI 0510Q]
Length = 330
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++++R TI P+ IK+ V R+ ++L +
Sbjct: 81 IFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKDFVMTAL----RISETKLAYR 136
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
+ V + G + + V+ + H I+S G+ V + KLK+ + +P
Sbjct: 137 IRFVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGELLVDKLKE--MAIPAG 194
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RAR 211
I G ++T + P+ V GDT ANI+ L A
Sbjct: 195 PIYGEIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQ-----TANIEKLAYHAD 249
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV EST+ ++ AR Y H+ + A+K K +LL H SAR+
Sbjct: 250 VLVHESTFGKQEGSL--ARKYYHSTNMQAARIAQKCRVKKLLLTHISARY 297
>gi|427400749|ref|ZP_18891987.1| ribonuclease Z [Massilia timonae CCUG 45783]
gi|425720262|gb|EKU83185.1| ribonuclease Z [Massilia timonae CCUG 45783]
Length = 320
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 122/300 (40%), Gaps = 49/300 (16%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
T ++ SG ++L+G + L T I R P +S +FI+
Sbjct: 11 GTPTRQRNMSGLALRLRGARSWVLVDCAEGT---------QHRILRTPLSVMSLRAVFIT 61
Query: 62 HAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN--HTLV 118
H H DH GLP +A+ GL R +P TI+ P ++ +E + M SEL+ L
Sbjct: 62 HMHGDHCYGLPGLLASAGLLGRSEPLTIVGPPPLRTMIECI------MQASELSLPFPLA 115
Query: 119 GL--DVGEEFCMRKDLFVKAFKTYHVIQSQ--GYVVYSVKQKLKQEYL---GLPGDEIKK 171
L D + DL V A H I S G+ +++++L E L +P +
Sbjct: 116 WLTPDDLAHGPLLPDLAVDATALSHRIPSWAYGFTEAAIERRLDTEKLRADAVPSSALWG 175
Query: 172 LKSSGTEITY----TVTTPEVAFTGDTMSDFIV--DEANIDVLR-----ARILVMESTYV 220
G ++ +T + +V D + ++L A +LV E+TY
Sbjct: 176 EIQQGRDVVLPDGRAITAADYLLPPRRARRIVVAGDNDSPELLAAGAQGADVLVHEATYT 235
Query: 221 DDSTTVEQARDYGHTHLS--EIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLA 278
++ V Q G H S + +A+ + ++L HFS R++ + P PLA
Sbjct: 236 EE---VLQKIGPGPQHSSAMRVAHFAQGAGVRNLVLTHFSPRYQ--------EGGPLPLA 284
>gi|403268077|ref|XP_003926113.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Saimiri
boliviensis boliviensis]
Length = 363
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSIVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFIPVNRAGSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGTEI--TYTVTT 185
AF+ +H I S G+ V K QKLK LG+P G KLK+ + + + +
Sbjct: 177 AFRLFHRIPSFGFSVLEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVIIS 234
Query: 186 PE-----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
P+ + GD S + DE A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDEGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|42783256|ref|NP_980503.1| ribonuclease Z [Bacillus cereus ATCC 10987]
gi|206976331|ref|ZP_03237239.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217961634|ref|YP_002340204.1| ribonuclease Z [Bacillus cereus AH187]
gi|222097590|ref|YP_002531647.1| ribonuclease z [Bacillus cereus Q1]
gi|229140877|ref|ZP_04269422.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|375286149|ref|YP_005106588.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|423354643|ref|ZP_17332268.1| ribonuclease Z [Bacillus cereus IS075]
gi|423374050|ref|ZP_17351389.1| ribonuclease Z [Bacillus cereus AND1407]
gi|423566892|ref|ZP_17543139.1| ribonuclease Z [Bacillus cereus MSX-A12]
gi|56749438|sp|Q731F6.1|RNZ_BACC1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808611|sp|B7HNQ7.1|RNZ_BACC7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808612|sp|B9IXD7.1|RNZ_BACCQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|42739184|gb|AAS43111.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC 10987]
gi|206745527|gb|EDZ56926.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217065116|gb|ACJ79366.1| ribonuclease Z [Bacillus cereus AH187]
gi|221241648|gb|ACM14358.1| metallo-beta-lactamase family protein [Bacillus cereus Q1]
gi|228642667|gb|EEK98953.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|358354676|dbj|BAL19848.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|401086489|gb|EJP94712.1| ribonuclease Z [Bacillus cereus IS075]
gi|401094865|gb|EJQ02935.1| ribonuclease Z [Bacillus cereus AND1407]
gi|401215407|gb|EJR22124.1| ribonuclease Z [Bacillus cereus MSX-A12]
Length = 307
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGQDFIGPPQKGRIITILGDTRFCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|270291406|ref|ZP_06197628.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|418069400|ref|ZP_12706678.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
gi|270280252|gb|EFA26088.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|357536869|gb|EHJ20897.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
Length = 308
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++++R TI P+ IK+ V R+ ++L +
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKDFVMTAL----RISETKLAYR 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
+ V + G + + V+ + H I+S G+ V + KLK+ + +P
Sbjct: 115 IRFVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGELLVDKLKE--MAIPAG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RAR 211
I G ++T + P+ V GDT ANI+ L A
Sbjct: 173 PIYGEIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQ-----TANIEKLAYHAD 227
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV EST+ ++ AR Y H+ + A+K K +LL H SAR+
Sbjct: 228 VLVHESTFGKQEGSL--ARKYYHSTNMQAARIAQKCRVKKLLLTHISARY 275
>gi|335357164|ref|ZP_08549034.1| ribonuclease Z [Lactobacillus animalis KCTC 3501]
Length = 316
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 43 FDIG--------RCPSRALSQNFLFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVP 91
FD+G R R + +FI+H H DHI GLP ++++R G ++P TI P
Sbjct: 36 FDVGEGTQHQILRTTIRPRKVDKIFITHLHGDHIFGLPGFLSSRSFQGGEELRPLTIYGP 95
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEE-FCMRKDLFVKAF-KTYHVIQSQGYV 149
I + V + ++ + L++ L +++ +E D F +F + H I+ GY
Sbjct: 96 KGIADFV----RISLKVSQTHLSYPLRFVELADEGVIFENDKFKVSFCRLDHRIECVGYR 151
Query: 150 VYS-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYT----------VTTPE----V 188
+ + KL+ E+ +P I +G +T + P+ +
Sbjct: 152 IEEKDHPGELLIDKLRAEH--VPSGPIYGRIKAGEVVTLPDGRTLDGKDYIGEPQKGRII 209
Query: 189 AFTGDT-MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
GDT + I++ A A +LV EST+ + AR+Y H+ + + A K
Sbjct: 210 TILGDTRQTPGILELAQ----GADVLVHESTFGKGEAKL--ARNYYHSTCIQAAKIANKA 263
Query: 248 ENKAILLIHFSARH 261
K +LL H SAR+
Sbjct: 264 GVKQLLLNHISARY 277
>gi|255535073|ref|YP_003095444.1| ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
gi|255341269|gb|ACU07382.1| Ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
Length = 305
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 58 LFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GLP +A+ R L R P I P IKE +E +F + EL +
Sbjct: 58 IFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIKEMLETIFRITETHKGFELVYH 117
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK----- 171
+ E+ K + V H + GY+ ++K K+ +L + EI K
Sbjct: 118 ELESKQSEKIFEDKRVEVFTIPLKHRVYCNGYL---FREKPKERHLNM--QEISKYPEIE 172
Query: 172 --------------LKSSGTEITYTVTTP-----EVAFTGDT--MSDFIVDEANIDVLRA 210
L T T+TT AF DT + + N+DV
Sbjct: 173 TCDYQNIKLGKDFVLNDGYTLKNATLTTDPSKSVSYAFCSDTRYIESIVPIIENVDV--- 229
Query: 211 RILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARH 261
L EST++ D +++ DY GHT E A K ++L HFS R+
Sbjct: 230 --LYHESTFLHD---LKEMADYTGHTTALEAARIARKANVGKLILGHFSNRY 276
>gi|256965002|ref|ZP_05569173.1| ribonuclease Z [Enterococcus faecalis HIP11704]
gi|307273098|ref|ZP_07554344.1| ribonuclease Z [Enterococcus faecalis TX0855]
gi|256955498|gb|EEU72130.1| ribonuclease Z [Enterococcus faecalis HIP11704]
gi|306510083|gb|EFM79107.1| ribonuclease Z [Enterococcus faecalis TX0855]
Length = 313
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 29/229 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I V + R+ S L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPV---GVADFVKTSLRVSQSRLSYPL 115
Query: 118 VGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP-GDE 168
+++ +E K V+ H I S GY + Q K + LG+P G
Sbjct: 116 KFIELTKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPL 175
Query: 169 IKKLKSS------GTEITYTVTTPE------VAFTGDTMSDFIVDEANIDVLRARILVME 216
KLK G EI E V GDT + RA +LV E
Sbjct: 176 YGKLKRGETIVFDGQEINGQTFVGERKPGRIVTILGDTRK---TKNSVTLARRADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
ST+ + + A+ Y H+ + E A++ + K ++L H SAR+ E
Sbjct: 233 STF--NKHEAKMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKE 279
>gi|229031788|ref|ZP_04187777.1| Ribonuclease Z [Bacillus cereus AH1271]
gi|228729534|gb|EEL80522.1| Ribonuclease Z [Bacillus cereus AH1271]
Length = 307
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PLFKRLKDGEVVELEDGTLLNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|228987335|ref|ZP_04147455.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157725|ref|ZP_04285800.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228625682|gb|EEK82434.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228772307|gb|EEM20753.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 307
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRFCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|52141354|ref|YP_085475.1| ribonuclease Z [Bacillus cereus E33L]
gi|76363372|sp|Q635E2.1|RNZ_BACCZ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|51974823|gb|AAU16373.1| possible metallo-beta-lactamase [Bacillus cereus E33L]
Length = 307
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|422855272|ref|ZP_16901930.1| ribonuclease Z [Streptococcus sanguinis SK1]
gi|327463249|gb|EGF09570.1| ribonuclease Z [Streptococcus sanguinis SK1]
Length = 309
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDVLR 209
+P G K+K+ GT+I ++ P +A GDT + +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKTSVSVRLAV---A 229
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEI 266
A +LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++
Sbjct: 230 ADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKCLLLNHISARFLAKDISQM 287
Query: 267 RRAVDAV 273
RR V
Sbjct: 288 RRDASTV 294
>gi|218232078|ref|YP_002368944.1| ribonuclease Z [Bacillus cereus B4264]
gi|254808610|sp|B7HB12.1|RNZ_BACC4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218160035|gb|ACK60027.1| ribonuclease Z [Bacillus cereus B4264]
Length = 307
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P + P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLKVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEVVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKPG 172
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|398844043|ref|ZP_10601151.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Pseudomonas sp. GM84]
gi|398254967|gb|EJN40016.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Pseudomonas sp. GM84]
Length = 311
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP +A+ + R +P +I+P+ + + V EL
Sbjct: 58 IFITHVHGDHCFGLPGLLASASMSGRTQPLDLILPAALHDWVRLSLAASDTYLSFELR-- 115
Query: 117 LVGLDVGEEFCMRKD-LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGDE 168
L+ ++ E + R D + V H + S G+V + Q+L E G+P
Sbjct: 116 LLAVETLEGW--RSDTVTVDTVALSHRVPSVGFVFTEINPEPRLDVQRLDAE--GVPRGP 171
Query: 169 IKKLKSSGTEITYTVTT-------------PEVAFTGDTMSDFIVDEANIDVLRARILVM 215
+ + G + + T V GD + ++ E D A +LV
Sbjct: 172 LWGALAKGDAVEHAGRTLHGHDYLRASRPARRVIVCGDNDNPELLAEVARD---ADVLVH 228
Query: 216 ESTYVDDSTTVEQAR-DYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
E+T+ +E+ +GH+ + + +AE + ++L HFSAR++ D R
Sbjct: 229 EATFT--QAVIERTGISFGHSSAAAVARFAETAGVRNLVLTHFSARYQPDPRR 279
>gi|452856153|ref|YP_007497836.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080413|emb|CCP22176.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 308
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ E + F V A H +++ GY V Q + + + +P +
Sbjct: 115 LTVHEIEEGTVFEDEQFIVTAVSVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVM 215
+ +G +T + P+ VAF+GDT +S+ + + A+ A +LV
Sbjct: 175 QKIKNGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELAH----NADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|431430744|ref|ZP_19512884.1| ribonuclease Z [Enterococcus faecium E1630]
gi|431759059|ref|ZP_19547676.1| ribonuclease Z [Enterococcus faecium E3346]
gi|430587768|gb|ELB25985.1| ribonuclease Z [Enterococcus faecium E1630]
gi|430626684|gb|ELB63250.1| ribonuclease Z [Enterococcus faecium E3346]
Length = 313
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+FI+H H DHI GLP +++R P I + +E+ +V + + L++ L
Sbjct: 59 IFITHLHGDHIFGLPGLISSRSFQSGDTPLEIYGP---KGIEEYIKVSLGISQTRLSYPL 115
Query: 118 VGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLP-GD 167
+++ E + D V K H I S GY V K LK+ LG+P G
Sbjct: 116 KFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDRLKE--LGIPAGP 173
Query: 168 EIKKLKSSGT---EITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRARI 212
KLK T E T+ + V GDT + +V N D I
Sbjct: 174 LYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLAENSD-----I 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV EST+ D + A +Y H+ + E A++ + K +LL H S R+
Sbjct: 229 LVHESTFNKDEARM--AHNYFHSTTHQAAEVAKEAQAKRLLLTHISPRY 275
>gi|304397924|ref|ZP_07379800.1| ribonuclease Z [Pantoea sp. aB]
gi|304354635|gb|EFM19006.1| ribonuclease Z [Pantoea sp. aB]
Length = 303
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K VE + +++ +
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISG--SYTDYPLS 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP-GD 167
LV ++ G + + F + A+ H + GY + + +LK E G+P G
Sbjct: 116 LVEIEAG--WTLDDGEFRISAWPLSHPVACFGYRIEQHDKPGLLDAARLKAE--GVPRGP 171
Query: 168 EIKKLKS------------SGTEITYTVTT-PEVAFTGDTMSDFIVDEANIDVLRARILV 214
++LK +G + T ++A GDT + + DV ++V
Sbjct: 172 WFQQLKQGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTDVALQLAADV---DLMV 228
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ +E+A GH+ + + A++ K ++ HFS+R+ ++ R
Sbjct: 229 HETTL--EAAMMEKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSR 280
>gi|104773888|ref|YP_618868.1| beta-lactamase hydrolase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513895|ref|YP_812801.1| beta-lactamase superfamily hydrolase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|418029478|ref|ZP_12668016.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418036513|ref|ZP_12674929.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|122275335|sp|Q04B09.1|RNZ_LACDB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123251929|sp|Q1GAM2.1|RNZ_LACDA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|103422969|emb|CAI97642.1| Putative hydrolase (beta-lactamase superfamily III) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093210|gb|ABJ58363.1| RNAse Z [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|354687563|gb|EHE87643.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354689784|gb|EHE89757.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 309
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I EQ + R+ +++++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGI----EQFVKTSLRISKTKISYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
+ V L+ G + + V K H I S G+ + + KL E+ G
Sbjct: 115 IKFVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRMVEADKAGELLMDKL-AEFKVPNGP 173
Query: 168 EIKKLK-SSGTEITYTVTTPEVAFTGDTMSDFIV----DEANIDVLR-----ARILVMES 217
+ KLK E+ F G +V D + +R A +LV E+
Sbjct: 174 LLGKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ D++ + ARDY H+ ++ E A + L H SAR+
Sbjct: 234 TF--DASEGKLARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|448589300|ref|ZP_21649459.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
gi|445735728|gb|ELZ87276.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
Length = 312
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 114/278 (41%), Gaps = 43/278 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLDFNERDDSLAIHGPP 92
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
K+ +++L ++ H ++ T G R D + ++AF+T H S GY
Sbjct: 93 GSKQHLKKLVHAGGYQPGFHVSVHETRPG-----NVAYRGDDYEIRAFETEHRTSSVGYA 147
Query: 150 VYSVKQ-----KLKQEYLGLP-GDEIKKLKSS-------GTEITY--TVTTP----EVAF 190
+ + + K E LG+P G +L S GT I V P +V +
Sbjct: 148 LVEDDRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVY 207
Query: 191 TGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT + I++ R A +LV ++T+ D+ E+A H+ E A
Sbjct: 208 TGDTRP----LDGTIEIARDADLLVHDATFTDEE--AERAAKTAHSTAREAARVARDANV 261
Query: 250 KAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287
+ L H SAR+ + R ++ G VF +G
Sbjct: 262 RRFALTHISARYAANP-RPLLEQAKEVFDGEVFVAEDG 298
>gi|229916219|ref|YP_002884865.1| ribonuclease Z [Exiguobacterium sp. AT1b]
gi|259494134|sp|C4L3C2.1|RNZ_EXISA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|229467648|gb|ACQ69420.1| ribonuclease Z [Exiguobacterium sp. AT1b]
Length = 301
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 36/250 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATR-GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH- 115
++++H H DH+ GLP +++TR L P T+ P +K + E R+ S L +
Sbjct: 56 VWVTHLHGDHVFGLPGFLSTRSALDGTAPLTVYGPKGLK----KWLEATLRVTGSHLGYE 111
Query: 116 -TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS------VKQKLKQEYLGLPGDE 168
T+ G+ F ++ D V K H S G+ + ++ L +E LG+P
Sbjct: 112 LTVTEYSDGDTF-IQDDHLVTVRKLEHRFPSFGFRIDGPEKPGMLRVDLVRE-LGVPSGP 169
Query: 169 I-------------KKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVM 215
I K S +T + VA GDT+ + A A +LV
Sbjct: 170 IYRTIKESDRFEFEGKWYDSKEYVTEPIPGKIVAILGDTIP---CENARKLADGADLLVH 226
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE---IRRAVDA 272
E+T+++ + AR YGH+ E A +++ H SAR+ E ++ V
Sbjct: 227 EATFMEAEQAL--ARKYGHSTTREATALANACAVGKLIVTHISARYVGREEEFVQEVVSD 284
Query: 273 VPAPLAGRVF 282
P+ L F
Sbjct: 285 FPSSLVATDF 294
>gi|432102915|gb|ELK30345.1| Zinc phosphodiesterase ELAC protein 1 [Myotis davidii]
Length = 363
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 111/277 (40%), Gaps = 67/277 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSTVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTTDQCPTEELKEFAHLGRADSSSREGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A++ K ++L HFS R+K + R +A
Sbjct: 293 TPQMAAAFAKRCRAKRLVLTHFSQRYKPVALAREGEA 329
>gi|229198271|ref|ZP_04324978.1| Ribonuclease Z [Bacillus cereus m1293]
gi|402555728|ref|YP_006596999.1| ribonuclease Z [Bacillus cereus FRI-35]
gi|423574169|ref|ZP_17550288.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|228585150|gb|EEK43261.1| Ribonuclease Z [Bacillus cereus m1293]
gi|401212738|gb|EJR19481.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|401796938|gb|AFQ10797.1| ribonuclease Z [Bacillus cereus FRI-35]
Length = 307
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|422870679|ref|ZP_16917172.1| ribonuclease Z [Streptococcus sanguinis SK1087]
gi|328946463|gb|EGG40603.1| ribonuclease Z [Streptococcus sanguinis SK1087]
Length = 309
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ G +I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGIKIIAADYISAPRPGKTIAILGDTRKTSASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|229075848|ref|ZP_04208824.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|229098612|ref|ZP_04229552.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|229104747|ref|ZP_04235408.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|229117638|ref|ZP_04247009.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|407706669|ref|YP_006830254.1| hypothetical protein MC28_3433 [Bacillus thuringiensis MC28]
gi|423378000|ref|ZP_17355284.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|423441121|ref|ZP_17418027.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|423448723|ref|ZP_17425602.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|423464195|ref|ZP_17440963.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|423533537|ref|ZP_17509955.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|423541207|ref|ZP_17517598.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|423547445|ref|ZP_17523803.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|423622772|ref|ZP_17598550.1| ribonuclease Z [Bacillus cereus VD148]
gi|228665817|gb|EEL21288.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|228678620|gb|EEL32836.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|228684691|gb|EEL38629.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|228707163|gb|EEL59360.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|401129317|gb|EJQ37000.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|401172395|gb|EJQ79616.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|401179166|gb|EJQ86339.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|401260892|gb|EJR67060.1| ribonuclease Z [Bacillus cereus VD148]
gi|401636266|gb|EJS54020.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|402417782|gb|EJV50082.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|402420462|gb|EJV52733.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|402463756|gb|EJV95456.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|407384354|gb|AFU14855.1| Ribonuclease Z [Bacillus thuringiensis MC28]
Length = 307
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ K H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFYVETKKLSHGIECFGYRI--VEKDIQGVLLVDKLLEMGVKPG 172
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQNADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ D +QA DY H+ + A K ++L H S+R++ D
Sbjct: 233 ATFAADDE--QQAHDYFHSTSKQAASIALHANAKRLILTHISSRYQGD 278
>gi|10946495|gb|AAG24919.1|AF308697_1 ELAC1 [Mus musculus]
Length = 362
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 114/277 (41%), Gaps = 68/277 (24%)
Query: 58 LFISHAHMDHIGGLP-----MYVATRGLYRMKPPTI------------------------ 88
+FI+H H DH GLP + + + + +P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCPISLQSGSVVARQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 89 -----IVPSCIKEDVEQLFEVHRRMDHSELNHTLVG----LDVGEE-FCMRKD--LFVKA 136
+VP+ + VE+L E MD ++ + G LD E +C+ D VKA
Sbjct: 118 YVVHELVPTADQCPVEELREF-AHMDETDSSPKGQGRTILLDAEENSYCLVDDEQFVVKA 176
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKL+ LG+P G KLK+ +G I+
Sbjct: 177 FRLFHRIPSFGFSVVEKKRAGKLNAQKLRD--LGVPPGPAYGKLKNGISVVLDNGVTISP 234
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ +V GD +V + + + L++ +DDS +++ARD+GH+
Sbjct: 235 QDVLKKPMVGRKVCILGDCSG--VVGDGGVKLCFEADLLIHEAGLDDSQ-IDKARDHGHS 291
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A+ K ++L HF R+K + R +A
Sbjct: 292 TPQMAAAFAKLSRAKRLVLTHFIQRYKPTPLAREGEA 328
>gi|375082902|ref|ZP_09729944.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
gi|374742400|gb|EHR78796.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
Length = 294
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 58/270 (21%)
Query: 41 LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+ +DIG R L+ L FI+H H DH GL + T L+ R KP + P
Sbjct: 20 ILWDIGEGTLRQLNIAKLSPMKIEKIFITHFHGDHYLGLMSLIQTMTLWNREKPLHVYGP 79
Query: 92 SCIKEDVEQL---------FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV 142
E ++ F++H ++GE D + +FK H
Sbjct: 80 KYTFEFIQNYLKSGFFRPSFDIHVH-------------ELGEARLKFGDYEIWSFKVEHG 126
Query: 143 IQSQGYVVYSVKQKL------KQEYLGL-PGDEIKKLKSSGT-EITYTVTTPE------- 187
+ + GY V+ K K K LGL PG +K+L++ G EI V E
Sbjct: 127 VPALGY-VFKEKDKRGSFDLDKIRELGLKPGPWMKELETKGKIEIDGKVIHLEDVTGSPK 185
Query: 188 ----VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
V +TGDT + + +A +L+ E+TY+ + E H+ + E E
Sbjct: 186 RGAKVVYTGDTEP---CERVKLFSEKADVLIHEATYLSEEDRGESY----HSTVPEACEV 238
Query: 244 AEKFENKAILLIHFSARHKVDEIRRAVDAV 273
A+K + K ++L H + R+ +E ++ + +
Sbjct: 239 AKKAKAKLLVLFHRAPRYTYEEYKQGAEKL 268
>gi|239827626|ref|YP_002950250.1| ribonuclease Z [Geobacillus sp. WCH70]
gi|259494136|sp|C5D428.1|RNZ_GEOSW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239807919|gb|ACS24984.1| ribonuclease Z [Geobacillus sp. WCH70]
Length = 308
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 28/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P TI P I + E+ + ++ L +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGDTPLTIYGPKGI----QAFIEISLSVSYTRLKYD 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL-------KQEYLGL-PGD 167
L +++ E + F V A + H I S G+ V V++ L K + LG+ PG
Sbjct: 115 LQVVEIEEGTIFEDERFLVIAKQLDHGIPSYGFRV--VEKDLPGTLLVDKLKVLGIRPGP 172
Query: 168 EIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMES 217
+++K +GT I V P+ + D EA++++ + A +LV E+
Sbjct: 173 IYQQIKLGKTVQLDNGTVIDGRDFVGPPQKGRIVTILGDTRYCEASVELAKEADVLVHEA 232
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
T+ + + + A DY H+ + E A+ K ++L H S+R++
Sbjct: 233 TFAAEDSAL--AHDYFHSTAVQAAEVAKLAGVKRLILTHISSRYQ 275
>gi|262372438|ref|ZP_06065717.1| ribonuclease Z [Acinetobacter junii SH205]
gi|262312463|gb|EEY93548.1| ribonuclease Z [Acinetobacter junii SH205]
Length = 320
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 60 ISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GL +A+ G+ R P TII P ++++Q EV ++ L + L
Sbjct: 61 ITHVHGDHCYGLVGLLASAGMNARTAPLTIIAP----KEIQQWIEVTAQLTDLHLPYPLN 116
Query: 119 GLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQE---YLGLPGDEIK 170
++V E + +L ++A H + S + + + ++KL + LG+ ++
Sbjct: 117 FINVNEAVQILQITDELSIQAHPLSHRVPSFAFSIIAQYTQKKLDTQALIQLGVAKGKVW 176
Query: 171 KLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVMES 217
G ++ T + A GD S ++ +A D A++L+ ES
Sbjct: 177 GDLQQGLDVQLNEQTLKAADFIQTQTQCVHAIVGGDNDSPELLAQACQD---AQLLIHES 233
Query: 218 TYVDDSTTVEQARDYGHTHLSE--IVEYAEKFENKAILLIHFSARHKVDEI-RRAV 270
TY + + G H S + E+A+K ++L HFS RH+ D+I +RA+
Sbjct: 234 TY---TQAILDKVGSGPMHSSTKMVAEFAQKHNLGNLILTHFSPRHQ-DQIGQRAI 285
>gi|257076086|ref|ZP_05570447.1| metal dependent hydrolase [Ferroplasma acidarmanus fer1]
Length = 252
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 51/214 (23%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMD------- 109
+ ISH H+DH GGL + RG +K TI+ P I+++ E++ +++ D
Sbjct: 53 MLISHMHLDHYGGLAEILWYRGARNVKDELTIMGPKGIRKNTEKILQIYNTPDNYMFSVK 112
Query: 110 --HSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPG 166
+ E+N+ ++ EF + ++ +++AF H+I Y + EY G
Sbjct: 113 PNYVEINNNGEVYEIKTEFIDKSENDYIEAFSGNHIIPDNMY---------RLEYRG--- 160
Query: 167 DEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVL--RARILVMESTYVDDST 224
+A+TGDT + NI +L A IL+ E TY D
Sbjct: 161 -------------------NTIAYTGDTAYN-----DNIPLLGENADILLHEMTYTDKD- 195
Query: 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
E A+ + H+ S ++ + K ++ +H +
Sbjct: 196 -AEIAKFWKHSTYSSAIKGFGESHAKKLVPVHLT 228
>gi|440286829|ref|YP_007339594.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
gi|440046351|gb|AGB77409.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
Length = 305
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + M P T+ P ++E VE R+ S ++
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNMNPVTLYGPKGLREFVETTL----RLSGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDEI 169
+ ++V F M L V A+ H ++ GY V + + L PG
Sbjct: 116 MEIVEVSAGFVMDDGLRKVTAYPLNHPVECYGYRVEEHDKPGALDAKALINAGVKPGPLF 175
Query: 170 KKLKSSGTEITY------------TVTTP--EVAFTGDTMSDFIVDEANIDVLRARILVM 215
++LK G +T + TP +A GDT + A+ ++V
Sbjct: 176 QQLKD-GLCVTLEDGRVIDGRDYLSPNTPGKTLAIFGDTAP---CEGASALAHGVDMMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ E+A GH+ + E A +++ H S+R+ + RR
Sbjct: 232 ETTL--ETAMEEKANSRGHSSTRQAAELARDAGVGRLVITHVSSRYDAEGCRR 282
>gi|116333981|ref|YP_795508.1| beta-lactamase superfamily hydrolase [Lactobacillus brevis ATCC
367]
gi|122269335|sp|Q03QP5.1|RNZ_LACBA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116099328|gb|ABJ64477.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus brevis ATCC 367]
Length = 317
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P TI P I+ V EV R+ ++L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDAPLTIYGPKGIRNFV----EVSLRVSETKLSYK 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY--HVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKS 174
+ ++ + + +D + + + H I+ GY + + + L +I
Sbjct: 115 IRYQELTTDGLVFEDGKFRVYAQHLDHRIECFGYRIEEKDHPGELQVEQLQAAKIPSGPV 174
Query: 175 SGT-EITYTVTTPE------------------VAFTGDTMSDFIVDEANIDVLRARILVM 215
G + TVT P+ VA GDT ++ I+ A +LV
Sbjct: 175 YGQLKAGKTVTLPDGRVINGADFLGPAQPGRIVAILGDTRQTPNAEKLAIN---ADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ + + AR Y H+ + E A++ K +LL H SAR+
Sbjct: 232 ESTFAKGESKL--ARSYYHSTNIQAAELAKRMHVKQLLLNHISARY 275
>gi|433463317|ref|ZP_20420874.1| ribonuclease Z [Halobacillus sp. BAB-2008]
gi|432187616|gb|ELK44884.1| ribonuclease Z [Halobacillus sp. BAB-2008]
Length = 308
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R + P T+ P+ +KE ++ R+ + L +
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGESPVTVYGPAGLKEYIDWSL----RLSGTHLRYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGL-PG--- 166
L ++V E D F V+A K H ++S GY++ Q + + LG+ PG
Sbjct: 115 LRVVEVKEGMLFEDDQFIVEAVKLQHGLESYGYLLKEKDRLGELQPHRLKELGIQPGPIY 174
Query: 167 DEIKKLKSSGTEITYTVTTPEV----------AFTGDTMS-DFIVDEANIDVLRARILVM 215
IK+ +++ E + +V A GDT + D+ + +LV
Sbjct: 175 QTIKEQETTRLEDGRVIHRSDVLGPAEKGRKLAILGDTRYLPSLADKLQL----VDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ D + A DY H+ + + A+ ++L H S+R++
Sbjct: 231 EATFAGDEE--QMAYDYYHSTVKQAASLADAAGAGELILNHVSSRYQ 275
>gi|227827458|ref|YP_002829237.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|229584673|ref|YP_002843174.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238619614|ref|YP_002914439.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|385773135|ref|YP_005645701.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
gi|385775765|ref|YP_005648333.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|259494140|sp|C3N554.1|RNZ_SULIA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494141|sp|C4KGQ7.1|RNZ_SULIK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494143|sp|C3MYG0.1|RNZ_SULIM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227459253|gb|ACP37939.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|228019722|gb|ACP55129.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238380683|gb|ACR41771.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|323474513|gb|ADX85119.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|323477249|gb|ADX82487.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
Length = 291
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 60/259 (23%)
Query: 39 LDLAFDIGRCPSRALSQN--------FLFISHAHMDHIGGLPMYVATRGLY-RMKPPTII 89
L++ D G L N + I+H H DH+ GL +A+ GL R + I+
Sbjct: 30 LNILLDCGEGTQYTLMNNKLGINSIKIIGITHMHGDHVFGLLGVIASMGLLDRKETLYIL 89
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ + FE +S+ N + ++ + + +++ + FKT H ++SQGY+
Sbjct: 90 GPRDLKDFLYTSFE------YSKFNPSF-KIEFIDNY-NDQNITIATFKTCHTVESQGYL 141
Query: 150 V--------------------YSVKQKLKQ----EYLGLPGDEIKKLKSSGTEITYTVTT 185
+ + V +KLK+ EY G K LK Y V
Sbjct: 142 ISERDRVKIDEEKLEKEKIKDWRVMRKLKEGKTVEYNG------KFLKPE----DYLVIK 191
Query: 186 P--EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+VA+TGDT+ V E+ V +L+ +ST++++ + A YGH+++++ +
Sbjct: 192 RGLKVAYTGDTIPCQSVIES---VKGVDLLIHDSTFLNEPS----ACTYGHSNVADAAKV 244
Query: 244 AEKFENKAILLIHFSARHK 262
A + K + L H S R++
Sbjct: 245 ALEASVKLLALTHISPRYE 263
>gi|229578965|ref|YP_002837363.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|229582282|ref|YP_002840681.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284997568|ref|YP_003419335.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
gi|259494144|sp|C3NHZ9.1|RNZ_SULIN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494145|sp|C3NDQ2.1|RNZ_SULIY RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|228009679|gb|ACP45441.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|228012998|gb|ACP48759.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284445463|gb|ADB86965.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
Length = 291
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 60/259 (23%)
Query: 39 LDLAFDIGRCPSRALSQN--------FLFISHAHMDHIGGLPMYVATRGLY-RMKPPTII 89
L++ D G L N + I+H H DH+ GL +A+ GL R + I+
Sbjct: 30 LNILLDCGEGTQYTLMNNKLGINSIKIIGITHMHGDHVFGLLGVIASMGLLDRKETLYIL 89
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ + FE +S+ N + ++ + + +++ + FKT H ++SQGY+
Sbjct: 90 GPRDLKDFLYTSFE------YSKFNPSF-KIEFIDNYN-DQNITIATFKTCHTVESQGYL 141
Query: 150 V--------------------YSVKQKLKQ----EYLGLPGDEIKKLKSSGTEITYTVTT 185
+ + V +KLK+ EY G K LK Y V
Sbjct: 142 ISERDRVKIDEEKLEKEKIKDWRVMRKLKEGKTVEYNG------KFLKPE----DYLVIK 191
Query: 186 P--EVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
+VA+TGDT+ V E+ V +L+ +ST++++ + A YGH+++++ +
Sbjct: 192 RGLKVAYTGDTIPCQSVIES---VKGVDLLIHDSTFLNEPS----AFTYGHSNVADAAKV 244
Query: 244 AEKFENKAILLIHFSARHK 262
A + K + L H S R++
Sbjct: 245 ALEASVKLLALTHISPRYE 263
>gi|406673480|ref|ZP_11080702.1| ribonuclease Z [Bergeyella zoohelcum CCUG 30536]
gi|405586438|gb|EKB60207.1| ribonuclease Z [Bergeyella zoohelcum CCUG 30536]
Length = 304
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FISH H DH GLP +++ R L R P I P I E +E +F + H E N
Sbjct: 56 NHIFISHLHGDHCFGLPGLISSFRLLGREAPLHIYGPKGIAEMLETIFRITD--SHREFN 113
Query: 115 HTLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK- 171
L + + +D L V H I + GY ++ KQ L+ L +EIKK
Sbjct: 114 VIYHELSSKQSELIYEDHKLTVHTIPLNHRIYANGY-LFREKQGLRH----LNMEEIKKY 168
Query: 172 -----------------LKSSGTEITYTV-TTP-----EVAFTGDTM--SDFIVDEANID 206
L S G + V TTP AF DT D + +D
Sbjct: 169 PEIEVCDYHKLKKGEDFLLSDGYLLKNEVLTTPAEKGKSYAFCSDTRFKPDIVPIIKGVD 228
Query: 207 VLRARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARHK--- 262
V L E+T++ + +++ DY GHT E A++ E ++L HFS R+
Sbjct: 229 V-----LYHEATFLHN---LKEMADYTGHTTAMEAALIAKEAEAGKLILGHFSNRYSDLS 280
Query: 263 --VDEIR 267
+DE R
Sbjct: 281 VFLDEAR 287
>gi|296222673|ref|XP_002757289.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Callithrix
jacchus]
Length = 363
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 111/274 (40%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSIVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHRRMDHS--ELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R S E T++ LD E + D VK
Sbjct: 118 YVVHELVPTVDQCPAEELKEFTHVNRAGSPSKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGT---EITYTVT 184
AF+ +H I S G+ V K QKLK LG+P G KLK+ + E TV+
Sbjct: 177 AFRLFHRIPSFGFSVLEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTVS 234
Query: 185 TPEV----------AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+V GD S + DE A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDEGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPHMAAMFAKMCRAKRLVLTHFSQRYKPVALAR 325
>gi|431896189|gb|ELK05605.1| Zinc phosphodiesterase ELAC protein 1 [Pteropus alecto]
Length = 363
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 109/273 (39%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSTVAKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKEFTDMSRADSPPKEGKGRTIILDSEENSYLLVDDEQFIVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D V++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFGADLLIHEATL--DDAQVDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ + K ++L HFS R+K + R
Sbjct: 293 TPQMAAAFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|333997962|ref|YP_004530574.1| ribonuclease Z [Treponema primitia ZAS-2]
gi|333739126|gb|AEF84616.1| ribonuclease Z [Treponema primitia ZAS-2]
Length = 308
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 56 NFLFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ +F+SH H DH+ G+P + + + + R P II P I E + E RR+ +N
Sbjct: 56 SVIFVSHTHADHVTGIPGLLMLSSQVDRDDPLYIIGPPRIAEYI----ETSRRVLDMYIN 111
Query: 115 HTLVGLDVGEE-FCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLPGD 167
+ +V ++ E + D F V+AF H GYV+ ++ K + LG+P
Sbjct: 112 YEIVVKEITEPGIVYQGDGFHVRAFNLRHTKPCLGYVLEEDRRPGIFHPEKADALGVPRG 171
Query: 168 EIKKLKSSGTEITYT---VTTPEVAFTGDTMS----DFIVD-----EANIDVLRARILVM 215
+ SG +T PE G+T S F+ D E +V + V
Sbjct: 172 PLWSRLQSGETVTAADGREVRPEDVL-GETRSGRKFSFVTDSLAFPEIADEVHGSDFFVC 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E + + E AR+ H + A+ E K + LIH+S R+
Sbjct: 231 EGMF--ERALEESAREKKHMTAEQAAYLAKAAEVKKMALIHYSPRY 274
>gi|154686646|ref|YP_001421807.1| ribonuclease Z [Bacillus amyloliquefaciens FZB42]
gi|166991093|sp|A7Z6F0.1|RNZ_BACA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|154352497|gb|ABS74576.1| Rnz [Bacillus amyloliquefaciens FZB42]
Length = 308
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ E + F V A H +++ GY V Q + + + +P +
Sbjct: 115 LTVHEIEEGTVFEDEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
+ G +T + P+ VAF+GDT + V E A +LV E
Sbjct: 175 QKIKKGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTEL---ARNADVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 232 ATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|425075650|ref|ZP_18478753.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086286|ref|ZP_18489379.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405594050|gb|EKB67473.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605201|gb|EKB78267.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 306
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDE 168
+ L ++VG ++ + V A+ H ++ GY + Y L L G+P
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQYDKPGTLDAAQLIADGVPPGP 173
Query: 169 IKKLKSSGTEITYT------------VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+ G +T TP +A GDT +A A ++V
Sbjct: 174 LFHQLKRGQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|385265379|ref|ZP_10043466.1| ribonuclease Z [Bacillus sp. 5B6]
gi|385149875|gb|EIF13812.1| ribonuclease Z [Bacillus sp. 5B6]
Length = 308
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
L ++ E + F V A H +++ GY V +++ +E PG
Sbjct: 115 LTVHEIEEGTVFEDEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIRPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+K+K G +T + P+ VAF+GDT + V E A +LV
Sbjct: 175 QKIK-KGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTEL---ARNADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|423121377|ref|ZP_17109061.1| ribonuclease Z [Klebsiella oxytoca 10-5246]
gi|376394212|gb|EHT06863.1| ribonuclease Z [Klebsiella oxytoca 10-5246]
Length = 306
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P+ ++E VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPTGLREFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GL-PGD 167
+ L ++VG + + V A+ H ++ GY + ++ L L G+ PG
Sbjct: 114 YPLTIVEVGPGLVFDEGGYRVSAYPLNHPVECYGYRIEEHARPGALDAARLIADGVRPGP 173
Query: 168 EIKKLKSSGT---EITYTV--------TTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
++LK T E T+ TP +A GDT EA +++ R L+
Sbjct: 174 LFQRLKQGETVELEDGRTIDGKHYLGPATPGKTLAIFGDTAP----CEAALELARGVDLM 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ T ++ + E+A GH+ + A + HFS+R+ + R
Sbjct: 230 VHETTLEQA-MAEKANSRGHSSSQQAAALARDAGVSMFIATHFSSRYDAEGCLR 282
>gi|395510675|ref|XP_003759598.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Sarcophilus
harrisii]
Length = 368
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 110/282 (39%), Gaps = 78/282 (27%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMD--HSELN- 114
+FI+H H DH GLP + T L + P P I V + R M+ HSEL
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISL-QSSPTASKTPMEIYGPVGLRNFIWRSMELSHSELTF 116
Query: 115 ----HTLV------------------GLD---------------VGEEFCMRKD--LFVK 135
H LV G D V + + D VK
Sbjct: 117 PYVVHELVPTEDQCPAGELKDFSYLDGADSPPKEIQGRTILLDSVEGSYVLVNDEQFLVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGTEITYT----- 182
AF+ +H I S G+ V + QKLK LG+P G KLK+ T +
Sbjct: 177 AFRLFHRIPSFGFSVSEKERPGRLNAQKLKD--LGVPPGPAYGKLKNGVTVVLENGIKVS 234
Query: 183 --------VTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
V ++ GD S + D A +L+ E+T D +++A++YGH
Sbjct: 235 PQDVLEKPVPGRKICILGDC-SGVVGDGGLKLCFEADLLIHEATL--DDAHMDKAKEYGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHK---------VDEIR 267
+ E+A+ + K ++L HFS R+K +D+IR
Sbjct: 292 STPRMAAEFAKLCKVKRLVLTHFSQRYKPPLLSEEGEIDDIR 333
>gi|387888598|ref|YP_006318896.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|414592667|ref|ZP_11442316.1| ribonuclease BN [Escherichia blattae NBRC 105725]
gi|386923431|gb|AFJ46385.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|403196148|dbj|GAB79968.1| ribonuclease BN [Escherichia blattae NBRC 105725]
Length = 304
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P ++E V ++ M S ++
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGGSGPLTLYGPPGLREYV----QLSLTMSGSWTDYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS-----VKQKLKQEYLGL-PGDEI 169
L ++V E F V+ H + GY V + G+ PG
Sbjct: 115 LDIVEVSEGVIFDDGEFEVRCVALNHPVVCFGYRVSAHDKPGALDAAALSASGVPPGPLF 174
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVME 216
++LK T I V VA GDT +D A + A +LV E
Sbjct: 175 QRLKRGETVQLEDGRWIDGRQYIGQPVKGKSVAIFGDTAP---LDSARLLAAEADMLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+T +++ ++A GH + A + K +++ HFS+R++ + R
Sbjct: 232 ATL--EASLAQKANSRGHATTVQAATLAREAGVKTLVITHFSSRYRRADFPR 281
>gi|432328975|ref|YP_007247119.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
gi|432135684|gb|AGB04953.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
Length = 305
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 43/252 (17%)
Query: 41 LAFDIGRCPSRAL---SQNFL-----FISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + + +F+ FI+H H DH GL + T L R +P I P
Sbjct: 35 LLFDCGEGTQRQMMRTNMSFMKIKRIFITHYHGDHFLGLAGLIQTMALNDRKEPLEIYGP 94
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ + + F + + L L+ G E D + +T H + S + Y
Sbjct: 95 ERTVDILTRYFSIGYY--STTFPVKLYELE-GNEILDFGDYTISTLRTKHPVPS---LAY 148
Query: 152 SVKQK-------LKQEYLGLPGDEIKKLKSSGTEITYTVTT-------------PEVAFT 191
S+K+K K + + L ++KL+ G EI Y T ++ ++
Sbjct: 149 SIKEKDMPRIDRNKAKSMKLNSKILEKLRREG-EIEYRGKTIRIEDVSNGTRIGRKIVYS 207
Query: 192 GDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
GDT +DE I+ R A +L+ E+T +S+ ++A +YGH+ + A++
Sbjct: 208 GDTAP---MDEM-INFARDASVLIHEAT--TESSLEDKANEYGHSSARQAARIAKRANVD 261
Query: 251 AILLIHFSARHK 262
+LL+H S R+K
Sbjct: 262 TLLLVHISPRYK 273
>gi|429087438|ref|ZP_19150170.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
gi|426507241|emb|CCK15282.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
Length = 304
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P I P I E VE R+ S ++
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTL----RLSGSWTSYP 114
Query: 117 LVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L ++ E + +L V AF H ++ GY + + +LK + PG
Sbjct: 115 LNVHEITEGQLFDDGELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVA-PGPL 173
Query: 169 IKKLKSSGTEITYTVTTPE------------------VAFTGDT--MSDFIVDEANIDVL 208
++LK TVT P+ +A GDT S + ++DV
Sbjct: 174 FQQLKRG-----ETVTLPDGRTLRGTDYLSAPRPGKKIAIFGDTGPTSQAVNLARDVDV- 227
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
++ E+T ++ E+A GH+ + A K +L+ HFS+R+ + +R
Sbjct: 228 ----MIHETTL--EAAMAEKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYDASDCQR 281
>gi|397571045|gb|EJK47594.1| hypothetical protein THAOC_33677 [Thalassiosira oceanica]
Length = 862
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 118/287 (41%), Gaps = 80/287 (27%)
Query: 41 LAFDIGRCP--SRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKED 97
+AFDIG S A+ ++F+SH H+DH+GGL + + + PT VP+ +
Sbjct: 46 VAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSCGGQAPTYFVPAQLLPQ 105
Query: 98 VEQLFEVHRRMD----------------HSELNHTLVGLDVGEE-------FCMRKDLFV 134
+E+ + +D S + LV ++ G+E + + +
Sbjct: 106 IEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFYA 165
Query: 135 KAFKTYHVIQ-SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD 193
+A + H + GY+V S + + GD ++++ E +TGD
Sbjct: 166 RAVQVDHAGHPTLGYLVKS--------GVSIKGDPVERV--------------EFGYTGD 203
Query: 194 TMSDFIVDE--------------ANID-VLRARILVMESTYVD---DSTTVEQARDYGHT 235
T + +V ID + A++L E T++D D ++A + GH
Sbjct: 204 TCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADERGHL 263
Query: 236 HLSEIVE-------YAEKFENK----AILLIHFSARHKVDEIRRAVD 271
H++ + A + E+ +I+ H SA+++ RRA+D
Sbjct: 264 HVNHLESIFGSHDLLASRAESTGVSGSIVFYHLSAKYR--PARRALD 308
>gi|419958267|ref|ZP_14474332.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
gi|388606950|gb|EIM36155.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
Length = 305
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P TI P+ I+E VE R+ S ++
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTL----RLSGSWTDYP 115
Query: 117 LVGLDVGEEFCMRK-DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDEI 169
L +++GE D V+A+ H ++ GY V + L PG
Sbjct: 116 LEVVEIGEGLVFDDGDYQVRAYPLNHPVECYGYRVEEHDKPGALNAAALQADGVKPGPLF 175
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDT--MSDFIVDEANIDVLRARIL 213
++LK G +T + P+ +A GDT + +DV +
Sbjct: 176 QRLK-HGETVTLEDGRVINGQDYLAPPQPGKKLAIFGDTAPCPSALRLAGGVDV-----M 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
V E+T ++ E+A GH+ + + A + + +++ H S+R+ V
Sbjct: 230 VHEATL--EAAMEEKANSRGHSSTRQAAQLAREAGVRKLIVTHVSSRYDV 277
>gi|399022537|ref|ZP_10724611.1| ribonuclease Z [Chryseobacterium sp. CF314]
gi|398084597|gb|EJL75275.1| ribonuclease Z [Chryseobacterium sp. CF314]
Length = 304
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 35/240 (14%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVH 105
+ +R N +FISH H DH GLP +A+ R L R P + P IK +E +F +
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHVYGPKGIKSMLETIFTIT 106
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLP 165
E+ + + D E+ + V H I GY+ ++K K +L +
Sbjct: 107 ETHRGFEVVYHELDKDYSEKIYEDNRVEVFTIPLDHRIYCNGYL---FREKPKDRHLNM- 162
Query: 166 GDEIKK-----------LKSS-----------GTEITYTVTTPEVAFTGDTMSDFIVDEA 203
EI K LK+ EI P V++ SD E+
Sbjct: 163 -KEIAKYSEIEVCDYHNLKAGKDFVLNDGYILKNEILTVAPAPSVSYA--FCSDTRYFES 219
Query: 204 NIDVLR-ARILVMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARH 261
I +++ +L EST++ D +++ DY GH+ E A+K E ++L HFS R+
Sbjct: 220 VIPIIKNVTVLYHESTFLHD---LKEMADYTGHSTALEAATIAKKAEVGKLILGHFSNRY 276
>gi|448578910|ref|ZP_21644269.1| ribonuclease Z [Haloferax larsenii JCM 13917]
gi|445724838|gb|ELZ76465.1| ribonuclease Z [Haloferax larsenii JCM 13917]
Length = 312
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 115/278 (41%), Gaps = 43/278 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + LF++H H DHI G+P + T R I P
Sbjct: 33 LLFDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLDFNERDDSLAIHGPP 92
Query: 93 CIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
K+ +++L ++ H ++ T G R D + ++AF+T H S GY
Sbjct: 93 GSKQHLKKLVHAGGYQPGFHVSVHETRPG-----NVAYRGDDYEIRAFETEHRTSSVGYT 147
Query: 150 VYSVKQ-----KLKQEYLGLP-GDEIKKLKSS-------GTEITY--TVTTP----EVAF 190
+ + + K E LG+P G +L S GT I V P +V +
Sbjct: 148 LVEDDRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVY 207
Query: 191 TGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFEN 249
TGDT +D I++ R A +LV ++T+ D+ E+A H+ E A
Sbjct: 208 TGDTRP---LDR-TIEIARDADLLVHDATFTDEE--AERAAKTAHSTAREAARVARDANV 261
Query: 250 KAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287
+ L H SAR+ + R ++ G VF +G
Sbjct: 262 RRFALTHISARYAANP-RPLLEQAKEVFDGEVFVAEDG 298
>gi|444707092|gb|ELW48397.1| Zinc phosphodiesterase ELAC protein 1 [Tupaia chinensis]
Length = 391
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P +++ + + E+ H +
Sbjct: 86 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 145
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 146 YVVHELVPTADQCPTEELKEFAHANQADNPPKEGQGRNILLDSEENSYLLVDNEQFVVKA 205
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 206 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGVSVVLENGVTISP 263
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
V ++ GD S + D A +L+ E+T D T +++A+++GH+
Sbjct: 264 QDVLKKPVVGRKICILGDC-SGVVGDGGVKQCFEADLLIHEATL--DDTQMDKAKEHGHS 320
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ K ++L HFS R+K + R
Sbjct: 321 TPQMAATFAKLCHAKRLVLTHFSQRYKPVALAR 353
>gi|384265998|ref|YP_005421705.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899017|ref|YP_006329313.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
gi|380499351|emb|CCG50389.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173127|gb|AFJ62588.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
Length = 308
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLHV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ E + F V A H +++ GY V Q + + + +P +
Sbjct: 115 LTVHEIEEGTVFEDEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVME 216
+ G +T + P+ VAF+GDT + V E A +LV E
Sbjct: 175 QKIKKGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTEL---ARNADVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 232 ATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|379721036|ref|YP_005313167.1| hypothetical protein PM3016_3163 [Paenibacillus mucilaginosus 3016]
gi|378569708|gb|AFC30018.1| Rnz [Paenibacillus mucilaginosus 3016]
Length = 314
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P + LFI+H H DH+ GLP +++R P TI P I+E VE
Sbjct: 50 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSL--- 106
Query: 106 RRMDHSELNH--TLVGLDVGEEFCMRKDLFV-KAFKTYHVIQSQGYVVYSVKQKLKQE-- 160
R+ S L + T++ L+ E+ D FV A H I+S GY + QK + +
Sbjct: 107 -RISDSHLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRIVEKPQKGRLDAE 165
Query: 161 ---YLGLP-GDEIKKLKSS-------GTE------ITYTVTTPEVAFTGDTMSDFIVDEA 203
LG+ G K+K+ GT+ I + V GDT
Sbjct: 166 RLKSLGIAFGPLFGKIKNGEDVELPDGTKLKAEEFIGPMIPGRIVTILGDTQPCVHAVTL 225
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+ D A +LV E+T+ + E A Y H+ + + A++ ++L H S+R++
Sbjct: 226 SKD---ADVLVHEATFAEHRK--ELAVMYDHSTAIDAAKTAQEAGVGTLILTHISSRYQG 280
Query: 264 DE 265
+E
Sbjct: 281 EE 282
>gi|386723644|ref|YP_006189970.1| hypothetical protein B2K_15995 [Paenibacillus mucilaginosus K02]
gi|384090769|gb|AFH62205.1| hypothetical protein B2K_15995 [Paenibacillus mucilaginosus K02]
Length = 316
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P + LFI+H H DH+ GLP +++R P TI P I+E VE
Sbjct: 50 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSL--- 106
Query: 106 RRMDHSELNH--TLVGLDVGEEFCMRKDLFV-KAFKTYHVIQSQGYVVYSVKQKLKQE-- 160
R+ S L + T++ L+ E+ D FV A H I+S GY + QK + +
Sbjct: 107 -RISDSHLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRIVEKPQKGRLDAE 165
Query: 161 ---YLGLP-GDEIKKLKSS-------GTE------ITYTVTTPEVAFTGDTMSDFIVDEA 203
LG+ G K+K+ GT+ I + V GDT
Sbjct: 166 RLKSLGIAFGPLFGKIKNGEDVELPDGTKLKAEEFIGPMIPGRIVTILGDTQPCVHAVTL 225
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+ D A +LV E+T+ + E A Y H+ + + A++ ++L H S+R++
Sbjct: 226 SKD---ADVLVHEATFAEHRK--ELAVMYDHSTAIDAAKTAQEAGVGTLILTHISSRYQG 280
Query: 264 DE 265
+E
Sbjct: 281 EE 282
>gi|352517511|ref|YP_004886828.1| ribonuclease Z [Tetragenococcus halophilus NBRC 12172]
gi|348601618|dbj|BAK94664.1| ribonuclease Z [Tetragenococcus halophilus NBRC 12172]
Length = 315
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP + +R KP I P I E ++ + LN+
Sbjct: 59 IFISHLHGDHIFGLPGLITSRSNQAGDKPLEIYGPKGI----EDFIRTSLKISKTHLNYP 114
Query: 117 LVGLDVG--EEFCMRKDLFVKAFKTY-HVIQSQGYVVYSVKQK-----LKQEYLGL-PGD 167
L +++ EE D FV K H + S G+ V K K + LG+ PG
Sbjct: 115 LKFIEISSDEEILFEDDQFVVTCKRLDHGVASFGFRVTEKDHKGELQVEKLKALGVKPGP 174
Query: 168 EIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIVD-------EANIDVLR--ARILVME 216
KLK G +T T T F G +V AN L A +LV E
Sbjct: 175 IYGKLK-QGESVTLTDGQTINGKDFVGQAKKGRVVTILGDTRYTANAIALAEDADVLVHE 233
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
ST+ + + A+ Y H+ + A+K ++L H SAR+
Sbjct: 234 STF--NKHEAKLAKAYYHSTTQQAATVAKKARVNQLILTHISARY 276
>gi|344268999|ref|XP_003406343.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Loxodonta
africana]
Length = 363
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 111/274 (40%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFE--------- 103
+FI+H H DH GLP + T L +P I P +++ + Q E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPLEIYGPVGLRDFIWQTMELSQTELVFP 117
Query: 104 --VHRRM---------DHSELNHT-------------LVGLDVGEEFCMRKD---LFVKA 136
VH + + E H + LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEEQKEFTHVKRADSPPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGTEITYT------ 182
F+ +H I S G+ V K QKLK LG+P G KLK+ + +
Sbjct: 178 FRLFHRIPSFGFSVMEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTVFP 235
Query: 183 ---VTTP----EVAFTGDTMSDFIVDEANIDVL-RARILVMESTYVDDSTTVEQARDYGH 234
+ TP ++ GD +V + + + A +L+ E+T D T +++A+++GH
Sbjct: 236 QDVLKTPIVGRKICILGDCSG--VVGDGGVKLCSEADLLIHEATL--DDTQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ + K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|410672002|ref|YP_006924373.1| ribonuclease Z [Methanolobus psychrophilus R15]
gi|409171130|gb|AFV25005.1| ribonuclease Z [Methanolobus psychrophilus R15]
Length = 305
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMD 109
+ALS +FI+H H DHI G+P + T + R +P I P V + + +
Sbjct: 52 KALSS--IFITHFHADHILGIPGLIQTMSFHGRTEPLRIYGP----HHVHEFARILSALG 105
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLG 163
+ +L + +D+ +++D + + A +T H + S GY + ++ + K LG
Sbjct: 106 YYKLRFEIDAVDLEPGDIIKRDGYSIHAIRTQHSVPSIGYALIEDERIGRFNRYKAIELG 165
Query: 164 L-PGDEIKKL-KSSGTEITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRA 210
+ PG KL K EI + T + + ++GDT + EA+ A
Sbjct: 166 VPPGPLFSKLHKGETVEINGKIITSQEVVGDPRPGRKIVYSGDTRPCQSILEASRG---A 222
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+L+ +ST +D E A++ H+ E A++ ++L H S+R+
Sbjct: 223 DLLIHDSTLANDQQ--EWAKESMHSTAEEAALLAKEANVSKLILTHISSRY 271
>gi|126459716|ref|YP_001055994.1| RNAse Z [Pyrobaculum calidifontis JCM 11548]
gi|166991502|sp|A3MV61.1|RNZ_PYRCJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|126249437|gb|ABO08528.1| RNAse Z [Pyrobaculum calidifontis JCM 11548]
Length = 287
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102
+G P+ S + ++H H DH+ GLP V T K ++ P + + +E+L
Sbjct: 48 LQVGVSPA---SLTLVAVTHGHEDHVLGLPGLVITSRFLGGKV-RVLAPRSMHKALERL- 102
Query: 103 EVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLK-QE 160
G++V E + + L + + H + + G++ + V KL Q+
Sbjct: 103 ----------------GVEVLEGYAAER-LKITCVEVCHTVDACGWLFEWDVGYKLDLQK 145
Query: 161 YLGLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEANIDV 207
GLP + L K E+ V PE + +TGDT + E +V
Sbjct: 146 ATGLPKWALTSLIKGHPVEVEGRVIRPEDVADPAHRRFKRLLYTGDTGPCPRMWETVGEV 205
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
+L+ E+T+ DD + ++A + GH+ ++ +E A K ++L H SAR+
Sbjct: 206 ---DVLIHEATFADDVES-QKAHEEGHSTFADALEAARALRAKVLILTHISARYPDKSRH 261
Query: 268 R--AVDAVPAP 276
R A P P
Sbjct: 262 RQLAAQVTPPP 272
>gi|374636657|ref|ZP_09708215.1| ribonuclease Z [Methanotorris formicicus Mc-S-70]
gi|373558289|gb|EHP84640.1| ribonuclease Z [Methanotorris formicicus Mc-S-70]
Length = 316
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 36/251 (14%)
Query: 41 LAFDIGRCPSR--------ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + N +FISH H DHI G+P + + R + I P
Sbjct: 31 LLFDCGENAQRQMMFTEVSPMKINNIFISHLHGDHILGIPGLLQSMAFSGRKEGINIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
K+ + + + ++N + + + + AF H + S Y+
Sbjct: 91 VGTKDMIIHALSIGYHGINFKINVYEISSKDPIKIIDSEKFEIYAFPVKHSVPSYAYIFK 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKSSGTEITYT---VTTPE-----------VAFTG 192
K+ K + LG+ G ++K+LK G + V PE +A++G
Sbjct: 151 EKKKPRLDMNKAKALGVKVGPDLKRLK-EGIPVKLENGRVINPEDVLLPPKKGICIAYSG 209
Query: 193 DTMSDFIVDEAN--IDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT+ ++E + L R+L+ E+TY DST E A + H+ + + ++ AE +
Sbjct: 210 DTIP---IEEFGKFLRELGCRVLIHEATY--DSTLKENAIETLHSTIEDAIKIAEIAGVE 264
Query: 251 AILLIHFSARH 261
++L H SAR+
Sbjct: 265 TLILTHISARY 275
>gi|423406432|ref|ZP_17383581.1| ribonuclease Z [Bacillus cereus BAG2X1-3]
gi|401660426|gb|EJS77908.1| ribonuclease Z [Bacillus cereus BAG2X1-3]
Length = 305
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATR----GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
+FI+H H DHI GLP + +R G R+ T+ P IK Q EV + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTRL---TVYGPKGIK----QFIEVALSVSTTHV 111
Query: 114 NHTLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL 164
+ L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+
Sbjct: 112 KYPLEIVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLAMGV 169
Query: 165 -PGDEIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARIL 213
PG K+LK +GT + + P+ + D EA+ ++ + A +L
Sbjct: 170 KPGPVFKRLKDGEVVELENGTMLNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
V E+T+ + +QA DY H+ + A + K ++L H S+R++
Sbjct: 230 VHEATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|397646628|gb|EJK77358.1| hypothetical protein THAOC_00815 [Thalassiosira oceanica]
Length = 783
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 34/229 (14%)
Query: 57 FLFISHAHMDHIGGLPMYVA------------TRGLYRMKPPTIIVPSCIKEDVEQLFE- 103
FL+ISH+H+DH G + V + G R+ +I PS + + ++ + +
Sbjct: 538 FLWISHSHLDHYGDVCELVERIAHAKRRSGQRSDGDGRL---VVIAPSKVLKMIDLMRQG 594
Query: 104 ---------VHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK 154
+ + H E + D+ C F+ + QS Y ++
Sbjct: 595 TNHGGPMKRSYLGVTHREFQSSPFARDIRSSVC--------NFELRYPGQSTHYRPFTTL 646
Query: 155 QKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTM-SDFIVDEANIDVLRARIL 213
++ E+ I +++ + ++ V F+GDT SD +V R +L
Sbjct: 647 CNVEVEHCRDAHAVILEMEVPSSRPNCSLERLTVCFSGDTRPSDNLVGHCRRCTGRISLL 706
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ E+T++ D +A+ H+ E ++ A + + A LL HFS R++
Sbjct: 707 IHEATFLHDGHGKSEAKKKNHSTTIEALDIARRIDAGACLLTHFSQRYQ 755
>gi|381403203|ref|ZP_09927887.1| ribonuclease Z [Pantoea sp. Sc1]
gi|380736402|gb|EIB97465.1| ribonuclease Z [Pantoea sp. Sc1]
Length = 303
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K VE + LN
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKTFVETALAISGSYTDYPLN-- 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP-GD 167
+V ++ G + + F + A+ H + GY + + +LK E G+P G
Sbjct: 116 IVEIEAG--WTLDDGEFRISAWPLNHPVACFGYRIEQHDKPGLLDAARLKAE--GVPRGP 171
Query: 168 EIKKLKSSGTEITY------------TVTTP--EVAFTGDTMSDFIVDEANIDVLRARIL 213
++LK G +T +TP ++A GDT + + DV ++
Sbjct: 172 WFQQLKQ-GECVTLEDGRVVNGADYLGPSTPGKKLAIFGDTAPTDVALQLAADV---DLM 227
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T ++ E+A GH+ + + A++ K ++ HFS+R+ ++ R
Sbjct: 228 VHETTL--EAAMEEKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSR 280
>gi|301762826|ref|XP_002916832.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Ailuropoda
melanoleuca]
gi|281342229|gb|EFB17813.1| hypothetical protein PANDA_004947 [Ailuropoda melanoleuca]
Length = 363
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 90 ------VPS---CIKEDVEQLFEVHRRMDH-SELNHTLVGLDVGEEFCMRKD---LFVKA 136
VP+ C E++++ V + H E + LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKECMYVSKTDSHPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGMKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ + K ++L HFS R+K + R
Sbjct: 293 TPQMAAAFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|337747188|ref|YP_004641350.1| hypothetical protein KNP414_02922 [Paenibacillus mucilaginosus
KNP414]
gi|336298377|gb|AEI41480.1| Rnz [Paenibacillus mucilaginosus KNP414]
Length = 312
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P + LFI+H H DH+ GLP +++R P TI P I+E VE
Sbjct: 48 RAPVKIGKLEKLFITHLHGDHLYGLPGLMSSRSYQGGDTPFTIYGPKGIREFVETSL--- 104
Query: 106 RRMDHSELNH--TLVGLDVGEEFCMRKDLFV-KAFKTYHVIQSQGYVVYSVKQKLKQE-- 160
R+ S L + T++ L+ E+ D FV A H I+S GY + QK + +
Sbjct: 105 -RISDSHLGYQTTIIELEPEEQVVFEDDQFVVSAAPLVHRIESFGYRIVEKPQKGRLDAE 163
Query: 161 ---YLGLP-GDEIKKLKSS-------GTE------ITYTVTTPEVAFTGDTMSDFIVDEA 203
LG+ G K+K+ GT+ I + V GDT
Sbjct: 164 RLKSLGIAFGPLFGKIKNGEDVELPDGTKLKAEEFIGPMIPGRIVTILGDTQPCVHAVTL 223
Query: 204 NIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+ D A +LV E+T+ + E A Y H+ + + A++ ++L H S+R++
Sbjct: 224 SKD---ADVLVHEATFAEHRK--ELAVMYDHSTAIDAAKTAQEAGVGTLILTHISSRYQG 278
Query: 264 DE 265
+E
Sbjct: 279 EE 280
>gi|422823341|ref|ZP_16871529.1| ribonuclease Z [Streptococcus sanguinis SK405]
gi|422826572|ref|ZP_16874751.1| ribonuclease Z [Streptococcus sanguinis SK678]
gi|422862261|ref|ZP_16908893.1| ribonuclease Z [Streptococcus sanguinis SK408]
gi|422865249|ref|ZP_16911874.1| ribonuclease Z [Streptococcus sanguinis SK1058]
gi|324993991|gb|EGC25910.1| ribonuclease Z [Streptococcus sanguinis SK405]
gi|324994690|gb|EGC26603.1| ribonuclease Z [Streptococcus sanguinis SK678]
gi|327474856|gb|EGF20261.1| ribonuclease Z [Streptococcus sanguinis SK408]
gi|327489981|gb|EGF21770.1| ribonuclease Z [Streptococcus sanguinis SK1058]
Length = 309
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFVLSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ G +I ++ P T + D A++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGIKIIAADYISAPRPGKTIAILGDTRKTSASVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRD 290
Query: 270 VDAV 273
AV
Sbjct: 291 ASAV 294
>gi|332686625|ref|YP_004456399.1| ribonuclease Z [Melissococcus plutonius ATCC 35311]
gi|332370634|dbj|BAK21590.1| ribonuclease Z [Melissococcus plutonius ATCC 35311]
Length = 310
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP +++R +I P +KE V+ R+ + L +
Sbjct: 59 IFITHLHGDHLFGLPGLLSSRSFQGGNEKLVIYGPRGVKEFVQTAL----RISKTRLAYE 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
L ++ EE + D V H I S GY + KLK+ LG+P
Sbjct: 115 LSFHEIDEEGIVFSDEQFTVSCRLLEHGITSYGYRIVERDHEGELQVDKLKE--LGIPSG 172
Query: 168 ----EIKKLKSSGTEITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRAR 211
+IKK ++ + + E V GDT + I N DVL
Sbjct: 173 PLYGKIKKGETVTLKDGQVINGKEFVGQRKKGRVVTILGDTRKTLNSIKLAENADVL--- 229
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ EST+ D + AR Y H+ + E A+K K ++L H SAR+
Sbjct: 230 --IHESTFNKDEAKM--ARAYYHSTSEQAAEVAKKANAKQLILTHISARY 275
>gi|422806264|ref|ZP_16854696.1| ribonuclease BN [Escherichia fergusonii B253]
gi|324112802|gb|EGC06778.1| ribonuclease BN [Escherichia fergusonii B253]
Length = 305
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + M+P TI P I+E VE + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETALRLSSSWTDYPLD-- 117
Query: 117 LVGLDVGE--EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
++ + GE + +RK V A+ H ++ G+ + ++ + GL PG
Sbjct: 118 IIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEYEKPGALDAKGLKAAGVQPGPL 174
Query: 169 IKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDEANIDVLRARILVM 215
+ LK+ +G + T +V A GDT D A A +++
Sbjct: 175 FQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAP---CDNALELARHADVMIH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T D + +A GH+ + A + +++ H S+R+ +R
Sbjct: 232 EATL--DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRYDDKGCQR 282
>gi|57641049|ref|YP_183527.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
gi|73917868|sp|Q5JE70.1|RNZ_PYRKO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57159373|dbj|BAD85303.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
Length = 314
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH G+P + T L+ R KP I P + V+ L LN
Sbjct: 57 IFITHFHGDHYLGIPALIQTMNLWDRQKPLHIYGPKYTFQFVQNL-----------LNSG 105
Query: 117 LV--GLDV-----GEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYL 162
G D+ GE D + +FK H I + GYV +K+KL+ EY
Sbjct: 106 FFRPGFDIHVHELGETRLKFGDYEIWSFKVEHGIPALGYVFKEKDRRGKFLKEKLR-EYG 164
Query: 163 GLPGDEIKKLKSSGTEITYT--------VTTP-----EVAFTGDTMSDFIVDEANIDVLR 209
G + KL+ G +I + VT P ++ +TGDT + + R
Sbjct: 165 LEEGPILGKLEREG-KIEWNGRIIRLEDVTGPRRKGLKIVYTGDTEP---CERVKLFSER 220
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
A +L+ E+TY++ D H+ + E + A + + K + L H + R+ ++
Sbjct: 221 ADLLIHEATYLNPG----DRGDSYHSTVEEACDTARRAKVKLLALFHRAFRYSYED 272
>gi|47568203|ref|ZP_00238907.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
gi|47555193|gb|EAL13540.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
Length = 307
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKSSG-TEITYTVTTPEVAFTGDTMSDFIVD--------EANIDVLR-ARILVMEST 218
K+LK E+ F G I+ EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPAQKGRIITILGDTRFCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|429767458|ref|ZP_19299655.1| ribonuclease Z [Clostridium celatum DSM 1785]
gi|429180868|gb|EKY22069.1| ribonuclease Z [Clostridium celatum DSM 1785]
Length = 315
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 35/234 (14%)
Query: 54 SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHS- 111
S + + I+H H DHI GLP +AT G R++P TII P I E V L + + + +
Sbjct: 53 SVDVIMITHCHGDHIVGLPGILATIGNSGRLEPLTIIGPQGITEVVNSLRVIAKYLPYDI 112
Query: 112 ---------ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL----K 158
LN T ++V EE + ++ + + H GY Y + + K
Sbjct: 113 NIIENPREVNLNVTKENINVVEE---KGEIKLTTLEVEHSSPCIGYSFYFRRDRKFSVDK 169
Query: 159 QEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDT-------------MSDFIVDEANI 205
E +P KL+ G + E +TG+ ++D E I
Sbjct: 170 AEKNRVPKILWNKLQKGGIDEVIVYDGKE--YTGEMVLGDERRGIKLSLITDSRPKEEMI 227
Query: 206 DVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
D ++ + + + E TY D ++A H SE A++ K +LL HFS
Sbjct: 228 DFIKESNLFICEGTYGSDLDK-DKAIKNKHMTFSEAATIAKEGRCKELLLTHFS 280
>gi|291517971|emb|CBK73192.1| RNAse Z [Butyrivibrio fibrisolvens 16/4]
Length = 303
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + ++H H DH+ GLP ++ + G R +P TII P ++ V L + +
Sbjct: 55 SIICLTHYHADHVSGLPGFLLSMGNSDRTEPITIIGPKGLERVVNSLRVIAPELPFEIKF 114
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLK-----QEYLGLPGDEI 169
H + D E+ + AFK H + GY + + +K + + LGLP
Sbjct: 115 HEITEAD---EYIELLGYHIHAFKVNHNVLCYGYTI-DIPRKGRFDVDAAKALGLPVQLW 170
Query: 170 KKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
L+ T E TP+ V + DT + EA+ + A +L+ E
Sbjct: 171 NPLQKGQTVEYEGNTFTPDMVMGDARRGIRVTYCTDTRPTKSLVEASKE---ADLLICEG 227
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
Y ++ V +A+ H E + A+ E K + L HFS
Sbjct: 228 MYAEEDKLV-KAKQNKHMTFYEAAKVAKDAEVKELWLTHFS 267
>gi|365904312|ref|ZP_09442071.1| beta-lactamase superfamily hydrolase [Lactobacillus versmoldensis
KCTC 3814]
Length = 308
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 59/240 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP +++R P + P +K+ VE V ++L +
Sbjct: 59 IFISHLHGDHIFGLPGLLSSRANQGGNSPLELYGPVGLKKFVETSLGV----TGTKLGYR 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGD 167
+ + L G E V A K H I S GY V + KLKQ +P
Sbjct: 115 IKYIELKTGGEIFNDSTFSVYAGKLEHRIASYGYRVVEKPRTGELLVDKLKQ--FNIPNG 172
Query: 168 EI-KKLKSS-------GTE------------------ITYTVTTPEVAFTGDTMSDFIVD 201
I KLK+ GT+ I+ T TPE+ D +VD
Sbjct: 173 PIYGKLKAGQVVTLPDGTDLDGKDFIGPDKAGKIVSIISDTRYTPEI--------DHLVD 224
Query: 202 EANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A+ ++V EST+ ++ + A Y H+ S+ A+K K +LL H SAR+
Sbjct: 225 HAD-------VVVHESTFSEEDKKL--AYSYFHSTASQAARVAKKCHVKGLLLTHISARY 275
>gi|386077497|ref|YP_005991022.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
gi|354986678|gb|AER30802.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
Length = 303
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K V+ + S ++
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALS----LSSSYTDYP 113
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYL--------GLP-G 166
L +++ + F V A+ H I G Y ++Q+ K +L G+P G
Sbjct: 114 LEVIEIAAGEVLDDGEFRVTAWPMNHTIDCFG---YRIEQRDKPGFLDAARLKAEGVPRG 170
Query: 167 DEIKKLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDE--ANIDVLRA 210
++LK G IT + +A GDT + + AN+DV
Sbjct: 171 PWYQQLK-QGERITLEDGRTIDGAAYLGPSTKGKTLAIFGDTAPTEVALQLAANVDV--- 226
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+V E+T D E+A GH+ + A++ K ++ HFS+R+ ++ R
Sbjct: 227 --MVHETTLED--ALAEKANGRGHSTTVQAATVAKQAGAKRMIATHFSSRYLARDMTR 280
>gi|429101132|ref|ZP_19163106.1| Ribonuclease Z [Cronobacter turicensis 564]
gi|426287781|emb|CCJ89219.1| Ribonuclease Z [Cronobacter turicensis 564]
Length = 324
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P + P I E +E R+ S ++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTL----RLSGSWTSYP 134
Query: 117 LVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L ++ E + +L V AF H ++ GY + + +LK + PG
Sbjct: 135 LSVHEITEGQLFDDGELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVA-PGPL 193
Query: 169 IKKLKSSGTEITYT----------VTTP----EVAFTGDTMSDFIVDEANIDVLRARILV 214
++LK G +T ++ P ++A GDT +A ++V
Sbjct: 194 FQQLK-RGETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTAP---TPQAVALAREVDVMV 249
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ E+A GH+ + A+ K +++ HFS+R+ ++ +R
Sbjct: 250 HETTL--EAAMAEKANGRGHSTTQQAATVAKDAGAKRLVMTHFSSRYGAEDCQR 301
>gi|222099215|ref|YP_002533783.1| Beta-lactamase domain protein [Thermotoga neapolitana DSM 4359]
gi|221571605|gb|ACM22417.1| Beta-lactamase domain protein [Thermotoga neapolitana DSM 4359]
Length = 254
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS---CIKEDVEQLFEVHRRMDHSEL 113
+FI+H H+DH+ GLP + L R +P +I V + E + LFE+ D ++
Sbjct: 56 IFITHGHVDHVYGLPSLLEMMRLNGRKRPLSIYVGEDFLVLVEKLLDLFEIANHPDSFKI 115
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLK 173
+ L GLD KDL ++ F H +++ K +
Sbjct: 116 D--LFGLDYKSSLFRVKDLMIETFPVNHTVRNLAL----------------------KFR 151
Query: 174 SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG 233
+ I Y+ T + +++F +N DV L+ E+T ST + A G
Sbjct: 152 NDNVSIVYSSDTA----YHEPLAEF---ASNCDV-----LIHEATM---STKLGDAFREG 196
Query: 234 HTHLSEIVEYAEKFENKAILLIH--FSA----RHKVDEIRRAVDAV 273
H+ S+ AEK K + L+H FS + ++E R D +
Sbjct: 197 HSTPSDAARIAEKARVKQLFLVHVGFSVSENPQKAIEEARNFFDGI 242
>gi|308174175|ref|YP_003920880.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|384160030|ref|YP_005542103.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|384164955|ref|YP_005546334.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|384169094|ref|YP_005550472.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
gi|307607039|emb|CBI43410.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|328554118|gb|AEB24610.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|328912510|gb|AEB64106.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|341828373|gb|AEK89624.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
Length = 308
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + I P IK +E +V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELAIYGPKGIKAFIETSLKV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ E D F V A H +++ GY + Q + + + +P +
Sbjct: 115 LAIHEIEEGTVFEDDQFIVTAASVIHGVEAFGYRIQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLR-ARILVM 215
+ G +T + P+ VAF+GDT V E ++ R A +LV
Sbjct: 175 QKIKKGETVTLDDGRIINGEDFLEPPKKGRIVAFSGDTR----VSERVTELARNADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKQLILTHISARYQ 275
>gi|260598692|ref|YP_003211263.1| ribonuclease Z [Cronobacter turicensis z3032]
gi|260217869|emb|CBA32408.1| Ribonuclease Z [Cronobacter turicensis z3032]
Length = 324
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P + P I E +E R+ S ++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTL----RLSGSWTSYP 134
Query: 117 LVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L ++ E + +L V AF H ++ GY + + +LK + PG
Sbjct: 135 LSVHEITEGQLFDDSELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVA-PGPL 193
Query: 169 IKKLKSSGTEITYT----------VTTP----EVAFTGDTMSDFIVDEANIDVLRARILV 214
++LK G +T ++ P ++A GDT DV ++V
Sbjct: 194 FQQLK-RGETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTAPTPQAVALARDV---DVMV 249
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T ++ E+A GH+ + A+ K +++ HFS+R+ ++ +R
Sbjct: 250 HETTL--EAAMAEKANGRGHSTTQQAATVAKDAGAKRLVMTHFSSRYGAEDCQR 301
>gi|48478345|ref|YP_024051.1| ribonuclease Z [Picrophilus torridus DSM 9790]
gi|56749432|sp|Q6KZJ4.1|RNZ_PICTO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|48430993|gb|AAT43858.1| metallo-beta-lactamase [Picrophilus torridus DSM 9790]
Length = 309
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 37/228 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GLP ++T R+ I P ++++++ + +D ++ +
Sbjct: 60 IFISHFHGDHFFGLPGLLSTFSFNGRIDDLNIFGPPGTIDEIKKVLSL---IDF-KITYN 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-------LKQEYLGLPGDE 168
+ ++ E DLF V A K H GY Y +K+K K + +G P ++
Sbjct: 116 IKIAEMEENKKYDFDLFDVYAIKNDHT--KYGYS-YKLKEKDLIKINREKADSIGFPKNK 172
Query: 169 IKKLKSSGTEI----TYTVTT--------PEVAFTGDT--MSDFIVDEANIDVLRARILV 214
++ L+++G Y++ + ++GDT +D + +N DVL +
Sbjct: 173 LELLRNNGEYYYMGKRYSIWDVADGIKPGRSIVYSGDTRPFNDMLKFASNCDVL-----I 227
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ST D++ A +YGH+ + E A K K + L H+S+R+
Sbjct: 228 HDSTM--DASIENLANEYGHSTARQAAEIALKANVKRLFLFHYSSRYN 273
>gi|359318464|ref|XP_849493.2| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Canis
lupus familiaris]
Length = 363
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 111/277 (40%), Gaps = 67/277 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEEQKEFTHVNEMDSLPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLDNGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A+ + K ++L HFS R+K + R +A
Sbjct: 293 TPQMAAAFAKLCQAKRLVLTHFSQRYKPVALAREGEA 329
>gi|423389544|ref|ZP_17366770.1| ribonuclease Z [Bacillus cereus BAG1X1-3]
gi|423417944|ref|ZP_17395033.1| ribonuclease Z [Bacillus cereus BAG3X2-1]
gi|401107115|gb|EJQ15072.1| ribonuclease Z [Bacillus cereus BAG3X2-1]
gi|401641635|gb|EJS59352.1| ribonuclease Z [Bacillus cereus BAG1X1-3]
Length = 307
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 31/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R ++ T+ V P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRS-FQGGTTTLTVYGPKGIK----QFIEVALSVSTTHVKY 113
Query: 116 TLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-P 165
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ P
Sbjct: 114 PLEIVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKP 171
Query: 166 GDEIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVM 215
G K+LK +GT + + P+ + D EA+ ++ + A +LV
Sbjct: 172 GPLFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 232 EATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|336251333|ref|YP_004595043.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
gi|334737389|gb|AEG99764.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
Length = 306
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P IKE +E R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG +D + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEDGYRVSAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVRPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK G I + +TP +A GDT +A A ++V
Sbjct: 174 LFHQLKLGQRVELEDGRVIDGSRYLGPSTPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|291394385|ref|XP_002713584.1| PREDICTED: elaC homolog 1-like [Oryctolagus cuniculus]
Length = 363
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 106/267 (39%), Gaps = 67/267 (25%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-----YRMKPPTIIVP--------------------- 91
+FI+H H DHI GLP + T L +P I P
Sbjct: 58 IFITHLHGDHIFGLPGLLCTISLQSSCTVSRQPIEIFGPVGLRDFIWRTMELSHTELVFP 117
Query: 92 -----------SCIKEDVEQLFEVHRR-MDHSELNHTLVGLDVGEEFCMRKD---LFVKA 136
C E +++L +VH E + LD E+ + D VKA
Sbjct: 118 YVVHELVPTADQCPTEALKELAQVHPADGPPKEGRGRTILLDPEEDSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I + G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPAFGFSVMEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISIVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
V+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QEVLKKPVSGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHK 262
+A+ K ++L HFS R+K
Sbjct: 293 TPWMAATFAKLCHAKRLVLTHFSQRYK 319
>gi|291619324|ref|YP_003522066.1| Rnz [Pantoea ananatis LMG 20103]
gi|378765240|ref|YP_005193699.1| ribonuclease Z [Pantoea ananatis LMG 5342]
gi|386017570|ref|YP_005935868.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|291154354|gb|ADD78938.1| Rnz [Pantoea ananatis LMG 20103]
gi|327395650|dbj|BAK13072.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|365184712|emb|CCF07662.1| ribonuclease Z [Pantoea ananatis LMG 5342]
Length = 338
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P T+ P +K V+ + S ++
Sbjct: 93 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALS----LSSSYTDYP 148
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYL--------GLP-G 166
L +++ + F V A+ H I G Y ++Q+ K +L G+P G
Sbjct: 149 LEVIEIAAGEVLDDGEFRVTAWPMNHTIDCFG---YRIEQRDKPGFLDAARLKAEGVPRG 205
Query: 167 DEIKKLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDE--ANIDVLRA 210
++LK G IT + +A GDT + + AN+DV
Sbjct: 206 PWYQQLK-QGERITLEDGRTIDGAAYLGPSTKGKTLAIFGDTAPTEVALQLAANVDV--- 261
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+V E+T D E+A GH+ + A++ K ++ HFS+R+ ++ R
Sbjct: 262 --MVHETTLED--ALAEKANGRGHSTTVQAATVAKQAGAKRMIATHFSSRYLARDMTR 315
>gi|239616718|ref|YP_002940040.1| hypothetical protein Kole_0311 [Kosmotoga olearia TBF 19.5.1]
gi|239505549|gb|ACR79036.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
Length = 283
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 36/269 (13%)
Query: 25 LSIAGHETCIIFPSLDLAFDIGRCPSRALSQNF-----LFISHAHMDHIGGLPMYVATRG 79
S A + T I++ + FD G S L + +FI+H H+DHI GL + TR
Sbjct: 6 FSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGLINTRN 65
Query: 80 LY---RMKPPTIIVPS---CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK--- 130
R K I P I++ + + E++ ++ + + L ++ GEE +R
Sbjct: 66 NAMGDREKALKINYPKKNRAIEDFLRFITEMNPKLRYEMI---LNPIEPGEEVYLRTAGN 122
Query: 131 -DLFVKAFKTYHVIQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKL-KSSGTE-ITYTVTT 185
V F H S GY V ++KLK E+ L EI L K G + +T T
Sbjct: 123 FRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLSPQEISDLVKEKGRDFVTQTYKK 182
Query: 186 PEVAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYA 244
+ +GD + + V++ + L+ E T+++ R H LSEI++
Sbjct: 183 KILTVSGDC------NALPVSVIKGSETLIHECTFINGG----DRRGQNHAVLSEILDNV 232
Query: 245 -EKFENKAILLIHFSARH--KVDEIRRAV 270
E + K ++L H S+R+ K+ +R+ +
Sbjct: 233 REASDIKRLILYHISSRYSSKISVLRKKL 261
>gi|366053340|ref|ZP_09451062.1| ribonuclease Z [Lactobacillus suebicus KCTC 3549]
Length = 309
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P TI P I E ++ ++ ++L +
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSHQGGNGPLTIYGPKGI----EDFVKISLKVSETKLGYP 114
Query: 117 L--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDEI 169
L V L G K V K H I+ GY + Q K + L +P I
Sbjct: 115 LKFVELTDGGVIFNDKTFTVSCEKLDHKIECFGYRIVEHDHPGELQVDKLKALNIPSGPI 174
Query: 170 -KKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVL-RARILVMEST 218
+LK+ GT I + P+ + D A++ + A +LV EST
Sbjct: 175 YGQLKAGKTVNLEDGTSIDGKDYIGKPQQGRVVTILGDTRKSNASVKLAENADVLVHEST 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ + AR+Y H+ + + A+K K +LL H SAR+
Sbjct: 235 FAKGEGRM--ARNYYHSTSVQAAQVAQKAGAKKLLLTHISARY 275
>gi|342889289|gb|EGU88444.1| hypothetical protein FOXB_01047 [Fusarium oxysporum Fo5176]
Length = 805
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 174 SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG 233
S GTE+ T + +A++GD DE + A +LV E T+ DD + A+ G
Sbjct: 673 SYGTELELT-SGLRIAYSGDCRPS---DEFAQECEGAHLLVHECTFDDD--MLSHAKKKG 726
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARH-KVDEIRR 268
H+ + E +E A K + + LL HFS R+ K D ++R
Sbjct: 727 HSTMGEALEIARKMKARRTLLTHFSQRYVKADSLKR 762
>gi|149194844|ref|ZP_01871938.1| ribonuclease Z [Caminibacter mediatlanticus TB-2]
gi|149135003|gb|EDM23485.1| ribonuclease Z [Caminibacter mediatlanticus TB-2]
Length = 306
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 31/245 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GL + T+ + + P I P +KE +E ++ R +H L +
Sbjct: 58 IFITHLHGDHCYGLFGLITTKMMEKSSSPLKIYAPRGLKEMIESCVDI--RFEH--LGYE 113
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK----LKQEYL---GL-PGD 167
+ +++ F D F +K H I+S Y +KQK L +E L GL P +
Sbjct: 114 IEFIEIFGGFEEEFDKFSIKVLPLIHSIESYAYF---IKQKDKINLNKELLQKDGLAPSN 170
Query: 168 EIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIV--DEANIDVL-----RARILVMEST 218
K LK G E+ + PE I+ D A D+L +L+ E+T
Sbjct: 171 YYKDLK-EGKEVIVNGVIYKPEKYLIKKEGKKVIIAGDNAEPDILGKYLNNLDLLIHEAT 229
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLA 278
Y + + + Y HT + E A+++ K ++ H S R++ EI ++ +
Sbjct: 230 YTQEVFDNLEIK-YLHTTAKNLGEVAKRYNVKNLIATHISPRYEGYEI---IEEIKKFYN 285
Query: 279 GRVFA 283
G VF
Sbjct: 286 GNVFV 290
>gi|336054229|ref|YP_004562516.1| ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
gi|333957606|gb|AEG40414.1| Ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
Length = 312
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 37/236 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP ++TR + P TI P+ I++ V+ +V R + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPTGIEQFVKTALKVSRTKISYPIKYV 118
Query: 117 LV---GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLK 173
++ GL C KD V + H I S G+ V V+ E L D++ K
Sbjct: 119 VLSEPGL-----ICEDKDFRVYTDQLEHRIPSFGFRV--VESSHSGELL---MDKLAKYH 168
Query: 174 -SSGTEITYTVTTPEVAFTGDTM---SDFIVDEANIDVL-----------------RARI 212
+G + +VA T+ DF+ E ++ A +
Sbjct: 169 VPNGPLLGKLKRGEQVALADGTVLNGKDFLGPEKPGRIVTIIYDTRSTPSIARLAKNADV 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
LV EST+ + + A +Y H+ E + A K K + L H SARH E ++
Sbjct: 229 LVHESTFAGNE--AKMAHNYYHSTAVEAAKVARKDNVKKLCLNHISARHMGAEAKK 282
>gi|392418912|ref|YP_006455517.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Mycobacterium chubuense NBB4]
gi|390618688|gb|AFM19838.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Mycobacterium chubuense NBB4]
Length = 376
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 110/236 (46%), Gaps = 39/236 (16%)
Query: 49 PSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRM 108
P+ A+++ L ++H H DH G+P + L ++ P V + + F R+
Sbjct: 124 PASAVTR--LCLTHFHGDHCLGVPGILQRLSLDGVRRP---VEAYYPASGAEFFA---RL 175
Query: 109 DHSELNHTLVGL---DVGEEFCMRKDLF--VKAFKTYHVIQSQGYVVYS------VKQKL 157
H+ + H + + V + C+ +F ++A + H +++ GY + V+++L
Sbjct: 176 RHASVFHDVTDVRENPVAGDGCVASGVFGELQARRLDHPVEAFGYRLAEPDGRQFVRERL 235
Query: 158 KQEYLGLPGDEIKKLKSSGT-----------EITYTVTTPEVAFTGDT-MSDFIVDEANI 205
++ G+ G + +L+ +G+ ++T AF DT + D + A+
Sbjct: 236 --DHFGVHGPAVGELQRTGSVGVGDRTVRVDDVTRPRRGQRFAFIMDTRLCDAVYALADG 293
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A + V+E+T++D+ + ARDYGH + A++ + ++L HFS R+
Sbjct: 294 ----ADLAVIEATFLDEDRAL--ARDYGHLTAGQAARVAQECGVRRLVLTHFSQRY 343
>gi|322372782|ref|ZP_08047318.1| ribonuclease Z [Streptococcus sp. C150]
gi|321277824|gb|EFX54893.1| ribonuclease Z [Streptococcus sp. C150]
Length = 309
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 34/241 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T + P IK+ V R+
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYRVH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
+E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FTEIDVHKLGL------VMENDKFAVYADKLDHTIFCVGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ +GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLENGTKIIAKDYISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI-RRAVD 271
LV ESTY + A+ +GH+ + + A+ K +LL H SAR +I R A D
Sbjct: 233 LVHESTYGKGDENI--AKSHGHSTNIQAAQVAKDASAKRLLLNHVSARFLGRDIGRMAAD 290
Query: 272 A 272
A
Sbjct: 291 A 291
>gi|429505789|ref|YP_007186973.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429487379|gb|AFZ91303.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 308
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ E + F V A H +++ GY V Q + + + +P +
Sbjct: 115 LTVHEIEEGTVFEDEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLR-ARILVM 215
+ G +T + P+ VAF+GDT V E ++ R A +LV
Sbjct: 175 QKIKKGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTR----VSERVTELARNADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKRLILTHISARYQ 275
>gi|383452594|ref|YP_005366583.1| ribonuclease Z [Corallococcus coralloides DSM 2259]
gi|380734182|gb|AFE10184.1| ribonuclease Z [Corallococcus coralloides DSM 2259]
Length = 307
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 104/257 (40%), Gaps = 41/257 (15%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + + F +H H DH G+ ++ T G+ R P + P
Sbjct: 34 LLFDCGEGTQRQMVRFGTGFTVDAAFFTHFHADHYLGIIGFLRTLGMMGRTAPMHLYGPP 93
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ + Q VH ++ + L G+ R V+A H I + GYV+
Sbjct: 94 PARRLLHQ--AVHLGLESLAFPVEIHELKDGDS-VRRNGYTVQAVGVDHRIHALGYVLVE 150
Query: 153 VKQKL-----KQEYLGLP-GDEIKKLKSSGTEITYT---VTTPE-----------VAFTG 192
+ K LG+P G KL+ G +T V PE + +G
Sbjct: 151 DGRPGRFHLEKARELGVPEGPSFGKLQK-GESVTLPDGRVVKPEDVLGESRSGRRLVISG 209
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQAR--DYGHTHLSEIVEYAEKFENK 250
DT + +A D A +LV EST+ DD EQAR + H+ E + A + K
Sbjct: 210 DTRPCPALVQAAKD---ADLLVHESTFSDD----EQARALETRHSTAREAAQVAREAGAK 262
Query: 251 AILLIHFSARHKVDEIR 267
++L H S+RH D R
Sbjct: 263 RLILTHLSSRHDTDPGR 279
>gi|229019356|ref|ZP_04176180.1| Ribonuclease Z [Bacillus cereus AH1273]
gi|229025602|ref|ZP_04182009.1| Ribonuclease Z [Bacillus cereus AH1272]
gi|228735696|gb|EEL86284.1| Ribonuclease Z [Bacillus cereus AH1272]
gi|228741924|gb|EEL92100.1| Ribonuclease Z [Bacillus cereus AH1273]
Length = 307
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 31/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP + +R ++ T+ V P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRS-FQGGTTTLTVYGPKGIK----QFIEVALSVSTTHVKY 113
Query: 116 TLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-P 165
L +++ EE + +D +V+ + H I+ GY + V++ ++ L G+ P
Sbjct: 114 PLEIVEITEEGTVFEDNEFYVETKRLSHGIECFGYRI--VEKDIQGALLVDKLLEMGVKP 171
Query: 166 GDEIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVM 215
G K+LK +GT + + P+ + D EA+ ++ + A +LV
Sbjct: 172 GPLFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 232 EATFAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|423674098|ref|ZP_17649037.1| ribonuclease Z [Bacillus cereus VDM062]
gi|401309649|gb|EJS14982.1| ribonuclease Z [Bacillus cereus VDM062]
Length = 307
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGATKLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|306490860|gb|ADM94979.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFE-----------VH 105
+FISH H DHI GLP +ATRGL +K I P +K ++ F+ ++
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLKNYLKNNFDYSYTHIPYFYHIY 118
Query: 106 RRMDHSELNHTLVGLDVG-EEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
S L++ L+ + +C + ++ +F Y +I+ V++ +K LG+
Sbjct: 119 TIEKESYLSNNLLWENGNISVYCALLNHYLDSF-GYAIIEKNIRRNILVEKLVK---LGI 174
Query: 165 -PGDEIKKLKSSGTE-------------ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA 210
PG KK K +G I +++ ++ + GDT + A I A
Sbjct: 175 PPGPIYKKFKENGIVNLDDGTVLKSADFIKESISIKKLCYCGDTT---FSNNAVILAQEA 231
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+L+ E T+ S ++A+ H+ + E ++ A K + + H S R+
Sbjct: 232 DLLIHEGTFC--SKRKQEAKQSYHSTIEEAIKVARLARVKKLAITHLSPRY 280
>gi|377809591|ref|YP_005004812.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
gi|361056332|gb|AEV95136.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
Length = 309
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 27/235 (11%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R R + +FI+H H DHI GLP ++++R TI P IK+ V ++
Sbjct: 48 RTNLRPRKIDKIFITHLHGDHIFGLPGFLSSRSFQGGDGKLTIYGPRGIKDFVLTSLKIS 107
Query: 106 -RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKL 157
R+ + H LD E V+A K H I S GY + +KL
Sbjct: 108 DTRLGYKIDFHE---LDNDGEILNNDKFIVRAEKLDHRILSFGYRIEEKAHQGELQVEKL 164
Query: 158 KQEYLGLPGDEIKKLKSSGTEITYT--VTTPEVAFTGDTMSDFIV----DEANIDVLR-- 209
K+ + +P + G +T F G S IV D ID +
Sbjct: 165 KE--MNIPSGPVYGRLKRGETVTLQDGRIINGKDFVGKPQSGRIVTILGDTRRIDSIESL 222
Query: 210 ---ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A +LV EST+ + + AR+Y H+ + A+K K +LL H SAR+
Sbjct: 223 AKDADVLVHESTFGKNEGKL--ARNYYHSTNMQAASVAKKVHVKELLLTHISARY 275
>gi|374813452|ref|ZP_09717189.1| ribonuclease Z [Treponema primitia ZAS-1]
Length = 308
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 56 NFLFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ +F+SH H DH+ G+P + + + + R P II P I E + E RR+ +N
Sbjct: 56 SVIFVSHTHADHVTGIPGLLMLSSQVDRDDPLYIIGPPRIAEYI----ETSRRVLDMYIN 111
Query: 115 HTLVGLDVGEE-FCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLP-G 166
+ ++ +V E + D F V+AF H GY + + K + LG+P G
Sbjct: 112 YEIIIKEVTEPGIVYQGDGFHVRAFNLRHTKPCLGYTLEEDERPGIFHPEKADALGVPRG 171
Query: 167 DEIKKLKSSGTEITY-------------TVTTPEVAFTGDTMSDFIVDEANIDVLRARIL 213
KL+S T I T + + +F DT++ E +V +
Sbjct: 172 PLWSKLQSGETVIAADGREVRPEEVLGETRSGRKFSFVTDTLA---FPEIADEVHGSDFF 228
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
V E + + E AR+ H + A+ E K + LIH+S R+ ++++ +
Sbjct: 229 VCEGMF--ERALEESAREKKHMTAEQAAYLAKAAEVKKMALIHYSPRYTEYDLKQLLKEA 286
Query: 274 PAPLAGRVFA 283
+ G + +
Sbjct: 287 QSIFPGTILS 296
>gi|374295232|ref|YP_005045423.1| RNAse Z [Clostridium clariflavum DSM 19732]
gi|359824726|gb|AEV67499.1| RNAse Z [Clostridium clariflavum DSM 19732]
Length = 303
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 35/224 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ +H H DH+ GLP ++ T G R +P ++ P IKE VE L + + + ELN
Sbjct: 57 VLFTHYHGDHVAGLPGFLLTLGNSGREEPLMLVGPPGIKEVVEGLTVISPELPY-ELN-- 113
Query: 117 LVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLPGDEIKK 171
L+ L E + +F+K+ H I Y + +Q + L +P + K
Sbjct: 114 LIELPDSESAEVSVSGIFIKSLPVDHTIPCLSYCIELKRQGKFDVDRARELMIPVNYWNK 173
Query: 172 L-KSSGTEITYTVTTPE-----------VAFTGDT-----MSDFIVDEANIDVLRARILV 214
L K + V TPE V + DT +++FI D + + +
Sbjct: 174 LQKGENVTVDDRVITPEMVLGEPRKGIKVCYCTDTRPSDELAEFIKD--------SDLFI 225
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
E Y D++ T +A H SE A+K + + L H+S
Sbjct: 226 CEGMYGDENDT-HKAEQKKHMTFSEAALLAKKGNVEELWLTHYS 268
>gi|326803491|ref|YP_004321309.1| ribonuclease Z [Aerococcus urinae ACS-120-V-Col10a]
gi|326650406|gb|AEA00589.1| ribonuclease Z [Aerococcus urinae ACS-120-V-Col10a]
Length = 307
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 26 SIAGHETCIIFPSLD-----LAFDIGRCPSRALSQNFL--------FISHAHMDHIGGLP 72
S A + +C + LD FD G + + L FISH H DH+ GLP
Sbjct: 14 SKARNVSCTLLKLLDERNEMWMFDCGEGSQQQFLKTTLKPRKVTKIFISHVHGDHMYGLP 73
Query: 73 MYVATRGLYRMK--PPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK 130
++++R + P TI P +K+ V+ + + + L + + ++ + K
Sbjct: 74 GFLSSRSFQGGENVPLTIYGPKGVKKYVQTSLGISK----TRLTYPIYYQELDQSGIAFK 129
Query: 131 D--LFVKAFKTYHVIQSQGYVVY---SVKQKL--KQEYLGLP-GDEIKKLKSS------- 175
D VK H++ S G+ V S + L K G+P G + KLK+
Sbjct: 130 DQQFTVKYATLDHIVPSYGFRVEEADSAGELLIDKAREAGVPNGPLLGKLKAGLTIQLED 189
Query: 176 GTEI-TYTVTTPE-----VAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQ 228
G E+ P+ V+ GDT +A ID+ + A +LV E+T+ ++ +
Sbjct: 190 GRELHGKDFLGPDKQGKIVSIYGDTR----YCQAGIDLAQNADVLVHEATF--EAGEEKM 243
Query: 229 ARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A DY H+ S+ A+K K + L H SAR+
Sbjct: 244 AHDYYHSTASQAAMVAKKAGAKQLYLTHISARY 276
>gi|311030610|ref|ZP_07708700.1| ribonuclease Z [Bacillus sp. m3-13]
Length = 306
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 25/228 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P T+ P IKE +E V M H +
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDTPLTVYGPVGIKEYIETSLRV--SMTHVKYPLI 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLPGDEI 169
+ + F +D +K K H I S G+ + + K+KQ + G +
Sbjct: 117 IEEFEEDGLFLEEEDFTIKGKKLVHGIPSFGFRIIQKDLPGALLMDKVKQSNIP-SGPHL 175
Query: 170 KKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLRAR-ILVMEST 218
+KLK G IT + + P+ + D ++++ A +L+ E+T
Sbjct: 176 QKLK-EGKSITLSDGRIVVGKDFIGPPKKGKVITILGDTRYTPVSVELAEAADVLIHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ + AR+Y H+ + + A++ +LL H SAR++ +++
Sbjct: 235 FAAKDEML--AREYFHSTTVQAAQVAKEAAANQLLLTHISARYQQEDV 280
>gi|163941883|ref|YP_001646767.1| ribonuclease Z [Bacillus weihenstephanensis KBAB4]
gi|229013352|ref|ZP_04170492.1| Ribonuclease Z [Bacillus mycoides DSM 2048]
gi|229134951|ref|ZP_04263757.1| Ribonuclease Z [Bacillus cereus BDRD-ST196]
gi|229168886|ref|ZP_04296604.1| Ribonuclease Z [Bacillus cereus AH621]
gi|423489323|ref|ZP_17466005.1| ribonuclease Z [Bacillus cereus BtB2-4]
gi|423495046|ref|ZP_17471690.1| ribonuclease Z [Bacillus cereus CER057]
gi|423498162|ref|ZP_17474779.1| ribonuclease Z [Bacillus cereus CER074]
gi|423518839|ref|ZP_17495320.1| ribonuclease Z [Bacillus cereus HuA2-4]
gi|423591860|ref|ZP_17567891.1| ribonuclease Z [Bacillus cereus VD048]
gi|423598542|ref|ZP_17574542.1| ribonuclease Z [Bacillus cereus VD078]
gi|254808613|sp|A9VG79.1|RNZ_BACWK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|163864080|gb|ABY45139.1| ribonuclease Z [Bacillus weihenstephanensis KBAB4]
gi|228614616|gb|EEK71723.1| Ribonuclease Z [Bacillus cereus AH621]
gi|228648453|gb|EEL04482.1| Ribonuclease Z [Bacillus cereus BDRD-ST196]
gi|228747945|gb|EEL97810.1| Ribonuclease Z [Bacillus mycoides DSM 2048]
gi|401151139|gb|EJQ58591.1| ribonuclease Z [Bacillus cereus CER057]
gi|401159894|gb|EJQ67273.1| ribonuclease Z [Bacillus cereus HuA2-4]
gi|401160211|gb|EJQ67589.1| ribonuclease Z [Bacillus cereus CER074]
gi|401231993|gb|EJR38495.1| ribonuclease Z [Bacillus cereus VD048]
gi|401236812|gb|EJR43269.1| ribonuclease Z [Bacillus cereus VD078]
gi|402431559|gb|EJV63623.1| ribonuclease Z [Bacillus cereus BtB2-4]
Length = 307
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|296333463|ref|ZP_06875916.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675031|ref|YP_003866703.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii str. W23]
gi|296149661|gb|EFG90557.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413275|gb|ADM38394.1| ribonuclease Z [Bacillus subtilis subsp. spizizenii str. W23]
Length = 307
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 36/251 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + T+ P IK +E V + + L +
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKLFIETSLAVTK----THLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLPGDEI 169
LV ++ E D F V A H +++ GY V S+K + +E PG
Sbjct: 115 LVIKEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMKIPPGPVY 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+++K G +T + P+ V +GDT + E D +LV
Sbjct: 175 QRIK-KGETVTLEDGRIINGNDFLEPPKKGRAVVLSGDTRVSDKLKELARD---CDVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRR-AVD 271
E+T+ + A DY H+ + A++ K ++L H SAR++ D E+++ A D
Sbjct: 231 EATFAKGDRKL--AYDYFHSTTEQAAVTAKEAGVKKLILTHISARYQGDASLELQKEAAD 288
Query: 272 AVPAPLAGRVF 282
P +A F
Sbjct: 289 VFPNSVAAYDF 299
>gi|444350343|ref|YP_007386487.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
gi|443901173|emb|CCG28947.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
Length = 306
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P IKE +E R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG +D + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEDGYRVSAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVRPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK G I + +TP +A GDT +A A ++V
Sbjct: 174 LFHQLKLGQRVELEDGRVIDGSRYLGPSTPGKTLAIFGDTAP---CPQALEMARGADVIV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|297582766|ref|YP_003698546.1| ribonuclease Z [Bacillus selenitireducens MLS10]
gi|297141223|gb|ADH97980.1| ribonuclease Z [Bacillus selenitireducens MLS10]
Length = 309
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 40/245 (16%)
Query: 48 CPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHR 106
P +A + +FI+H H DH+ GLP ++ +R +P T+ PS ++ +EQ V
Sbjct: 49 APIKAGAITKVFITHLHGDHLYGLPGFLGSRSFQGADQPLTVYGPSGLRPYIEQSLAV-- 106
Query: 107 RMDHSELNHTLVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ--KLKQEYL- 162
+ L + L +V E E + + H + S GY +Q +L +E L
Sbjct: 107 --SGTHLTYPLTVHEVEEGEIVDDGNWRISCLALDHRMPSFGYRFDEKEQPGRLDRERLL 164
Query: 163 --GLP-GDEIKKLKSSGT-------------EITYTVTTPEVAFTGDT-----MSDFIVD 201
+P G + LK T +T V + GDT ++DF +
Sbjct: 165 KDDIPSGPWLGDLKEQKTVTLPDGRVVDGRDYVTEPVKGRRIVILGDTRPMPAVADFAKE 224
Query: 202 EANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A +LV E+T++ + E A + H+ + E A + + +LL H SAR+
Sbjct: 225 --------ADLLVHEATFM--AGERETADRFAHSTTLDAAEIARQADVSRLLLTHISARY 274
Query: 262 KVDEI 266
K ++
Sbjct: 275 KAADM 279
>gi|261880520|ref|ZP_06006947.1| ribonuclease Z [Prevotella bergensis DSM 17361]
gi|270332743|gb|EFA43529.1| ribonuclease Z [Prevotella bergensis DSM 17361]
Length = 304
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 30/230 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ ISH H DH GL ++T G L R P I P ++ ++ + ++ + E + T
Sbjct: 59 ILISHLHGDHCFGLIGLISTFGMLGRTAPLHIYAPKSLEPMLDSMVQMF--CPNLEYSIT 116
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
+D ++ + +D + ++A H I GY+ + K L +Y +P +
Sbjct: 117 FHAVDTSQQSVIYEDRSMTIEAIPLEHRIPCCGYL-FREKPTLPHIRRDMIDYYHIPISQ 175
Query: 169 IKKLK-------SSGTEITY-TVTTPEV-----AFTGDTMSDFIVDEANIDVLRARILVM 215
I +K + G I + +T P A+ DT + E + V +L
Sbjct: 176 INNIKQGADWTTAEGERIPHEKLTNPSAPPRSYAYCSDTQ---YMPELHKMVKGVDLLYH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
ESTY DS+ ++AR Y H+ E A + +LL H+SAR++ +E
Sbjct: 233 ESTY--DSSLADRARLYHHSTSVEAATVAREAHAGKLLLGHYSARYQNEE 280
>gi|452974941|gb|EME74760.1| ribonuclease Z [Bacillus sonorensis L12]
Length = 307
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKP-PTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP V++R + T+ P IK +E + + + L +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGESLLTVYGPKGIKTYLETVLDA----TGTHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVV--YSVKQKLKQEYL---GL-PGDEI 169
LV ++ E D F+ K+ H I + GY + + L E L G+ PG
Sbjct: 115 LVIEEIEEGIVFEDDQFIVTAKSVVHGIPAFGYRIEEKDIPGALDAEALKEAGISPGPVY 174
Query: 170 KKLKSSGT---EITYTVTTPE----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+KLK+ T E TV + +A +GDT + I A +LV E
Sbjct: 175 QKLKNGETVTLEDGRTVNGADFIGPPKKGRIIAISGDTKQ---CENVKILAENADVLVHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
+T+ E A DY H+ + E A+ ++L H SAR++ + + V
Sbjct: 232 ATFAKGDR--ELAGDYYHSTTEQAAETAKAAGAGQLILTHISARYQGESVNELV 283
>gi|148642552|ref|YP_001273065.1| ribonuclease Z [Methanobrevibacter smithii ATCC 35061]
gi|148551569|gb|ABQ86697.1| ribonuclease Z (zinc-dependent), beta-lactamase superfamily, ElaC
[Methanobrevibacter smithii ATCC 35061]
Length = 300
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 48/254 (18%)
Query: 41 LAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVAT---RGLYRMKPPTII 89
+ FD G R L + +FISH H DHI GLP + + RG R KP TI
Sbjct: 31 MLFDCGESTQRQLIYAKISPMKISKIFISHYHGDHILGLPGLLQSLNFRG--REKPLTIY 88
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ ++ + + + + + +++ + D ++ K+ V+ + +
Sbjct: 89 GPKGLKKVENAIYS----LGYCKFDFPIEFIEISSGTILETDEYI--LKSQEVMHNVTNL 142
Query: 150 VYSVKQKLKQEY-------LGLP-GDEIKKL-KSSGTEITYTVTTPE-----------VA 189
YS+++K K + LG+P G KL E+ + PE +
Sbjct: 143 AYSIEEKKKPRFLRNKAIELGVPVGPLFGKLHNGEEVEVNGKIIKPEQVLGDARKGIKIT 202
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYV--DDSTTVEQARDYGHTHLSEIVEYAEKF 247
++GDT +E + +L+ ESTY DD ++AR+ H+ + A+
Sbjct: 203 YSGDTRP---CEEMIEFAKNSTLLIHESTYTLEDD----DKARENFHSTSQDAATIAKCS 255
Query: 248 ENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 256 NTKRLVLTHISTRY 269
>gi|325958402|ref|YP_004289868.1| Ribonuclease Z [Methanobacterium sp. AL-21]
gi|325329834|gb|ADZ08896.1| Ribonuclease Z [Methanobacterium sp. AL-21]
Length = 302
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 116/250 (46%), Gaps = 38/250 (15%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-- 90
+ FD G R +++ + +F++H H DHI G+P + + +R + T+ +
Sbjct: 31 ILFDCGEGTQRQMTRARLSPMKIDRIFVTHFHGDHILGIPGLIQSMA-FRGRRDTLEIYG 89
Query: 91 PSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYV 149
P I+E L +++ + L+ + ++ + + +D F + A H +++ Y
Sbjct: 90 PPGIQE----LLNSMKKLGYFALSFNIAVHEIKDGTVLEEDDFKISAQLMKHSVENYAYC 145
Query: 150 VYSVKQK--LKQEYLGL---PGDEIKKLKSS-GTEITYTVTTPE-----------VAFTG 192
+ + +K++ L L PG KL+S +I + PE + ++G
Sbjct: 146 IEEKRDPKFIKEKALKLGIKPGPAYGKLQSGLPVKIGNKIIKPEEVLGEKRRGRKLVYSG 205
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT++ +E A +L+ EST+ +++ E+A + GH+ + A+K K++
Sbjct: 206 DTLA---CEEMVGFSKDADVLIHESTF--NNSHKEKAFETGHSTAEMAADIAKKAGVKSL 260
Query: 253 LLIHFSARHK 262
+L H S R+K
Sbjct: 261 VLTHISTRYK 270
>gi|149721103|ref|XP_001499894.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Equus caballus]
Length = 363
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSTVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKDFVHVNRADSPPKDGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVMEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ + K ++L HFS R+K + R
Sbjct: 293 TPQMAAAFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|395240764|ref|ZP_10417788.1| Ribonuclease Z [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475546|emb|CCI87765.1| Ribonuclease Z [Lactobacillus gigeriorum CRBIP 24.85]
Length = 312
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 101/247 (40%), Gaps = 35/247 (14%)
Query: 43 FDIGRCPS-RALSQNF-------LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSC 93
FD+G + L N +FISH H DHI GLP +ATR + P TI P+
Sbjct: 36 FDVGEATQHQVLKTNIRLRKVTRIFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPAG 95
Query: 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV 153
+++ V V + +N V LD C + V K H + S G+ V
Sbjct: 96 LEQFVRTALRVSKTKVSYPIN--FVELDQDGLICNDRGFKVYTKKLDHRVASYGFRVEEA 153
Query: 154 KQ--KLKQEYLG---LPGDEIKKLKSSGTEITYTVTT---------PE-----VAFTGDT 194
+L + L +P I +G +IT T PE V+ DT
Sbjct: 154 SHPGELLVDELAKYHIPNGPIYGKLKAGEKITLDDGTVIDGKNFLGPERPGRIVSVIYDT 213
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
S + E D A +L+ EST+ + + +A Y H+ + + A++ K + L
Sbjct: 214 RSTPAIAELAKD---ADVLIHESTFGGNEAKLAKA--YYHSTSVQAAKVAKENNVKLLCL 268
Query: 255 IHFSARH 261
H SAR+
Sbjct: 269 DHISARY 275
>gi|423669730|ref|ZP_17644759.1| ribonuclease Z [Bacillus cereus VDM034]
gi|401298857|gb|EJS04457.1| ribonuclease Z [Bacillus cereus VDM034]
Length = 307
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGEDFIGPPQKGRVITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|301024047|ref|ZP_07187763.1| ribonuclease Z [Escherichia coli MS 69-1]
gi|300396779|gb|EFJ80317.1| ribonuclease Z [Escherichia coli MS 69-1]
Length = 305
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 30/225 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIV 119
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEIKK 171
+G D + +RK V A+ H ++ GY + + L + L G+P + +
Sbjct: 120 EIGADEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQ 176
Query: 172 LKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVME 216
+G IT V +A GDT +A +D+ + ++V E
Sbjct: 177 ALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+T D T +A GH+ + A + +++ H S+R+
Sbjct: 233 ATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|293365775|ref|ZP_06612481.1| ribonuclease Z [Streptococcus oralis ATCC 35037]
gi|307703356|ref|ZP_07640299.1| ribonuclease Z [Streptococcus oralis ATCC 35037]
gi|419778673|ref|ZP_14304560.1| ribonuclease Z [Streptococcus oralis SK10]
gi|291315708|gb|EFE56155.1| ribonuclease Z [Streptococcus oralis ATCC 35037]
gi|307623092|gb|EFO02086.1| ribonuclease Z [Streptococcus oralis ATCC 35037]
gi|383187095|gb|EIC79554.1| ribonuclease Z [Streptococcus oralis SK10]
Length = 309
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYRIY 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GL 164
E +H +G + + V A + H I GY V ++ L E L G+
Sbjct: 119 FHEFDHNSLG-----KILETEKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAGV 173
Query: 165 P-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARIL 213
P G K+K+ GTEI ++ P + D +A++ + + A +L
Sbjct: 174 PFGPLFGKIKNGQDVVLEDGTEIKAADYISAPRPGKIITILGDTRKTDASVRLGVNADVL 233
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
V ESTY + AR++GH+ + + A + K +LL H SAR
Sbjct: 234 VHESTYGKGDEKI--ARNHGHSTNMQAAQVATEAGAKRLLLNHISAR 278
>gi|410291590|gb|JAA24395.1| elaC homolog 1 [Pan troglodytes]
Length = 361
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 56 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 115
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 116 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 174
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 175 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 232
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D L A +L+ E+T D +++A+++GH
Sbjct: 233 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCLEADLLIHEATL--DDAQMDKAKEHGH 289
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 290 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 323
>gi|397659149|ref|YP_006499851.1| ribonuclease Z [Klebsiella oxytoca E718]
gi|394347363|gb|AFN33484.1| Ribonuclease Z [Klebsiella oxytoca E718]
Length = 306
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 30/243 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P N +FI+H H DH+ GLP + +R + P T+ P +K VE
Sbjct: 49 RTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKAFVETAL--- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
R+ S ++ L ++VG + + F V A+ H ++ GY + + + L
Sbjct: 106 -RLSGSWTDYPLTIIEVGPGLVLDEAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAAQL 164
Query: 165 ------PGDEIKKLKSS-------GTEITYT----VTTP--EVAFTGDTMSDFIVDEANI 205
PG ++LK G I + TP ++A GDT E
Sbjct: 165 IAEGVPPGPLFQRLKQGLTVELEDGRRIDGSRYLGPATPGKKLAIFGDTAPCETARELAC 224
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
V ++V E T + E+A GH+ + A ++ HFS+R+ +
Sbjct: 225 GV---DVMVHEVTL--EQAMAEKANSRGHSTSQQTASLAHDAGVGTLIATHFSSRYDAEG 279
Query: 266 IRR 268
+R
Sbjct: 280 CQR 282
>gi|114673177|ref|XP_001155672.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Pan
troglodytes]
gi|332849952|ref|XP_003315964.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Pan
troglodytes]
gi|397513963|ref|XP_003827274.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Pan paniscus]
gi|410223320|gb|JAA08879.1| elaC homolog 1 [Pan troglodytes]
gi|410255136|gb|JAA15535.1| elaC homolog 1 [Pan troglodytes]
gi|410332787|gb|JAA35340.1| elaC homolog 1 [Pan troglodytes]
Length = 363
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D L A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCLEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|419920568|ref|ZP_14438682.1| ribonuclease Z [Escherichia coli KD2]
gi|388384576|gb|EIL46298.1| ribonuclease Z [Escherichia coli KD2]
Length = 311
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 30/225 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIV 125
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEIKK 171
+G D + +RK V A+ H ++ GY + + L + L G+P + +
Sbjct: 126 EIGADEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQ 182
Query: 172 LKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVME 216
+G IT V +A GDT +A +D+ + ++V E
Sbjct: 183 ALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVHE 238
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+T D T +A GH+ + A + +++ H S+R+
Sbjct: 239 ATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|423104052|ref|ZP_17091754.1| ribonuclease Z [Klebsiella oxytoca 10-5242]
gi|376385694|gb|EHS98415.1| ribonuclease Z [Klebsiella oxytoca 10-5242]
Length = 306
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 30/243 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P N +FI+H H DH+ GLP + +R + P T+ P +K VE
Sbjct: 49 RTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKAFVETAL--- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
R+ S ++ L ++VG + + F V A+ H ++ GY + + + + L
Sbjct: 106 -RLSGSWTDYPLTIIEVGPGLVLDEAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAVQL 164
Query: 165 ------PGDEIKKLKSS-------GTEITYT----VTTP--EVAFTGDTMSDFIVDEANI 205
PG ++LK G I + TP ++A GDT E
Sbjct: 165 IAEGVPPGPLFQRLKQGLTVELEDGRRIDGSRYLGPATPGKKLAIFGDTAPCEAARELAQ 224
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
V I+V E T + E+A GH+ + A ++ HFS+R+ +
Sbjct: 225 GV---DIMVHEVTL--EQAMAEKANSRGHSTSQQTAALARDAGVGTLIATHFSSRYDAEG 279
Query: 266 IRR 268
+R
Sbjct: 280 CQR 282
>gi|333382972|ref|ZP_08474637.1| ribonuclease Z [Dysgonomonas gadei ATCC BAA-286]
gi|332828302|gb|EGK01014.1| ribonuclease Z [Dysgonomonas gadei ATCC BAA-286]
Length = 321
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 20/228 (8%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FISH H DH GL ++T GL R I + ++ + + + + E+
Sbjct: 74 NHIFISHLHGDHCFGLIGLISTLGLLGRTGALVIHTVAGLENTLRPEIDFFCKDNPFEVK 133
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
+ V E + + VK H + G+ ++ KQK ++ +P E
Sbjct: 134 IEVFNPKVSEVIYEDRSVSVKTIPLVHRVPCAGF-LFEEKQKEAHLLPDMIKFYNIPIRE 192
Query: 169 IKKLKSSGTEIT--------YTVTTP-EVAFTGDTMSDFIVDEANIDVLRA-RILVMEST 218
+ K+K +T +TTP E A SD E I V+ +L E+T
Sbjct: 193 LAKIKQGADFVTEDGKVVPHERLTTPAEPARCYAYCSDTAYSEKIIPVIEGVDLLYHEAT 252
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ D T +A++ GH+ + + A+ K ++L HFSAR+ + I
Sbjct: 253 FAD--TDKSRAKETGHSTAGQAAQIAKMANVKKLMLGHFSARYPDNNI 298
>gi|384181963|ref|YP_005567725.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324328047|gb|ADY23307.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 307
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY--SVKQKL---KQEYLGL-PGDE 168
L +++ EE + +D V+ + H I+ GY + ++ L K +G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPL 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D EA+ + + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRKLAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANVKRLILTHISSRYQGD 278
>gi|203284649|ref|YP_002222389.1| ribonuclease Z [Borrelia duttonii Ly]
gi|254808615|sp|B5RMU7.1|RNZ_BORDL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|201084092|gb|ACH93683.1| ribonuclease Z [Borrelia duttonii Ly]
Length = 319
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 33/254 (12%)
Query: 41 LAFDIGRCPSRALSQN--------FLFISHAHMDHIGGL---PMYVATRGLYRMKPPTII 89
+ FD G +L + + I+H H DHI GL M +A G R +P TII
Sbjct: 33 ILFDCGEATQMSLRKQKISWQKIKMICITHLHADHITGLLGIVMLMAQSGDTRKEPLTII 92
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGY 148
P IK+ +E E+ R + ++ + + ++ E K ++ K H I GY
Sbjct: 93 GPIGIKKYLETNIELLRVHKNYQIIYKEIIINKTEPVLYEDKRKRIEYIKLKHSIDCIGY 152
Query: 149 VVYSVKQK-----LKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEVAFTGDTMSD--- 197
+ + K E L +P I+K G E+ + E+ G+T
Sbjct: 153 LFIEKDKPGKFDIQKAESLNIPKGPIRKKLQEGYEVMLNGRKIVPSEIL--GETKKGLKF 210
Query: 198 -FIVDEANIDVLRARI-----LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKA 251
+I D A + L I +++EST+ DD E+A+ H + +K +
Sbjct: 211 AYITDTAYFEELSTYIQNFNLVIIESTFKDDLK--EEAKKKLHLTAKLAAQITKKAKVYQ 268
Query: 252 ILLIHFSARHKVDE 265
LIHFS R+ +++
Sbjct: 269 TGLIHFSERYTLNK 282
>gi|171186168|ref|YP_001795087.1| ribonuclease Z [Pyrobaculum neutrophilum V24Sta]
gi|254808679|sp|B1YAJ2.1|RNZ_THENV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|170935380|gb|ACB40641.1| Ribonuclease Z [Pyrobaculum neutrophilum V24Sta]
Length = 287
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 41/234 (17%)
Query: 43 FDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102
IG P+ S + I+H H DH GLP V T + ++ P + + +E L
Sbjct: 48 LQIGVSPA---SLTAVAITHQHEDHTLGLPGLVITSRFLGGRT-AVLAPRSMHKALEAL- 102
Query: 103 EVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-YSVKQKLK-QE 160
G++V + + + L V + H + + G++ + V KL +
Sbjct: 103 ----------------GVEVMDSYGGDR-LRVSCVEVCHTVDACGWLFQWDVGYKLDLSK 145
Query: 161 YLGLPGDEIKKL-KSSGTEITYTVTTPE------------VAFTGDTMSDFIVDEANIDV 207
GLP + L + S E+ + PE + +TGDT E V
Sbjct: 146 AAGLPRWALTSLIRGSPVEVGGRLIKPEDVAEPGHKRLRRLLYTGDTAP---CPEMWRKV 202
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+L+ E+T+ DD ++A + GH+ +++ VE A+ ++L H S+R+
Sbjct: 203 GEVDVLIHEATFADD-VEPQKAHEEGHSTVADAVEAAKALNAGVLILTHVSSRY 255
>gi|259046824|ref|ZP_05737225.1| ribonuclease Z [Granulicatella adiacens ATCC 49175]
gi|259036447|gb|EEW37702.1| ribonuclease Z [Granulicatella adiacens ATCC 49175]
Length = 314
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 35/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + T+ P IK ++ + S+L +
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEDDLTLYGPKGIKNFIDTTIQA----SCSKLGYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLP-G 166
L ++ +E + +D V+ + H I S G+ V Q +LK+ LG+P G
Sbjct: 115 LRVVEFEKEGLLFEDKHFKVEMKRLEHGIPSYGFRVTEKDQPGELQADRLKE--LGIPFG 172
Query: 167 DEIKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARIL 213
KLK T I+ + V GDT + + I R+ +L
Sbjct: 173 PLYGKLKKGETITLEDGTIVNGQDYISPDIKGRVVTICGDTRK---CEASEILAYRSDVL 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+TY D +QA + H+ + E A+ E K +LL H SAR+
Sbjct: 230 VHEATYEGDKG--QQAYRHFHSTSLQAAEVAKNAEVKRLLLTHISARY 275
>gi|377557317|ref|ZP_09786967.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
gi|376165723|gb|EHS84664.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
Length = 308
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P TI P IK VE ++ + L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDEPLTIYGPVGIKTFVETALQI----SETRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGD 167
+ +++ ++ + KD V+A + H I GY + +KL++ L +P
Sbjct: 115 IEYVEIKQDGEIFKDQTFQVEARRMDHKIACFGYRIVEADHPGELQVEKLRE--LAIPAG 172
Query: 168 EIKKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
I +G +T + P+ + D V+E ++ + + A +LV E
Sbjct: 173 PIYGQIKAGQTVTLPDGRQINGQDFIGAPQKGRIVAIIPDTRVNENSVKLAQNADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
T+ + + A +Y H+ ++ A++ +LL H SAR+
Sbjct: 233 GTFAKNEQRM--AHNYYHSTSAQAATVAKQAHVGRLLLNHISARY 275
>gi|425082509|ref|ZP_18485606.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|428937369|ref|ZP_19010661.1| ribonuclease Z [Klebsiella pneumoniae JHCK1]
gi|405600761|gb|EKB73926.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|426296407|gb|EKV59048.1| ribonuclease Z [Klebsiella pneumoniae JHCK1]
Length = 306
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 32/235 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLKSSGTEITYT------------VTTP--EVAFTGDTMSDFIVDEANIDVLRARIL 213
+LK G +T TP +A GDT +A A ++
Sbjct: 174 LFHQLKR-GQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVM 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 230 VHETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|261349508|ref|ZP_05974925.1| ribonuclease Z [Methanobrevibacter smithii DSM 2374]
gi|288861872|gb|EFC94170.1| ribonuclease Z [Methanobrevibacter smithii DSM 2374]
Length = 300
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 48/254 (18%)
Query: 41 LAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVAT---RGLYRMKPPTII 89
+ FD G R L + +FISH H DHI GLP + + RG R KP TI
Sbjct: 31 MLFDCGESTQRQLIYAKISPMKISKIFISHYHGDHILGLPGLLQSLNFRG--REKPLTIY 88
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149
P +K+ ++ + + + + + +++ + D ++ K+ V+ + +
Sbjct: 89 GPKGLKKVENAIYS----LGYCKFDFPIEFIEISSGTILETDEYI--IKSQEVMHNVTNL 142
Query: 150 VYSVKQKLKQEY-------LGLP-GDEIKKL-KSSGTEITYTVTTPE-----------VA 189
YS+++K K + LG+P G KL E+ + PE +
Sbjct: 143 AYSIEEKKKPRFLRNKAIELGVPVGPLFGKLHNGEEVEVNGKIIKPEQVLGDARKGIKIT 202
Query: 190 FTGDTMSDFIVDEANIDVLRARILVMESTYV--DDSTTVEQARDYGHTHLSEIVEYAEKF 247
++GDT +E + +L+ ESTY DD ++AR+ H+ + A+
Sbjct: 203 YSGDTRP---CEEMIEFAKNSTLLIHESTYTLEDD----DKARENFHSTSQDAATIAKCS 255
Query: 248 ENKAILLIHFSARH 261
K ++L H S R+
Sbjct: 256 NTKRLVLTHISTRY 269
>gi|402845104|ref|ZP_10893449.1| ribonuclease Z [Klebsiella sp. OBRC7]
gi|402272034|gb|EJU21259.1| ribonuclease Z [Klebsiella sp. OBRC7]
Length = 306
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 30/243 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P N +FI+H H DH+ GLP + +R + P T+ P +K VE
Sbjct: 49 RTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKAFVETAL--- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
R+ S ++ L ++VG + + F V A+ H ++ GY + + + + L
Sbjct: 106 -RLSGSWTDYPLTIIEVGPGLVLDEAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAVQL 164
Query: 165 ------PGDEIKKLKSS-------GTEITYT----VTTP--EVAFTGDTMSDFIVDEANI 205
PG ++LK G I + TP ++A GDT E
Sbjct: 165 IAEGVPPGPLFQRLKQGLTVELEDGRRIDGSRYLGPATPGKKLAIFGDTAPCEAARELAQ 224
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
V I+V E T + E+A GH+ + A ++ HFS+R+ +
Sbjct: 225 GV---DIMVHEVTL--EQAMAEKANSRGHSTSQQTAALAHDAGVGTLIATHFSSRYDAEG 279
Query: 266 IRR 268
+R
Sbjct: 280 CQR 282
>gi|365137317|ref|ZP_09344036.1| ribonuclease Z [Klebsiella sp. 4_1_44FAA]
gi|419972730|ref|ZP_14488157.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419977591|ref|ZP_14492890.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419983293|ref|ZP_14498444.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419989458|ref|ZP_14504434.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419995497|ref|ZP_14510303.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420001591|ref|ZP_14516246.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420006505|ref|ZP_14521002.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420012325|ref|ZP_14526639.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420018058|ref|ZP_14532256.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420023854|ref|ZP_14537869.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420031221|ref|ZP_14545043.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420037071|ref|ZP_14550727.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420041017|ref|ZP_14554515.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420046778|ref|ZP_14560097.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420052488|ref|ZP_14565669.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420060369|ref|ZP_14573369.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420063948|ref|ZP_14576759.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420069832|ref|ZP_14582486.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420075376|ref|ZP_14587852.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420081137|ref|ZP_14593447.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421909576|ref|ZP_16339386.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421916911|ref|ZP_16346475.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424932481|ref|ZP_18350853.1| Ribonuclease BN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428148081|ref|ZP_18995973.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428943654|ref|ZP_19016513.1| ribonuclease Z [Klebsiella pneumoniae VA360]
gi|363656181|gb|EHL94951.1| ribonuclease Z [Klebsiella sp. 4_1_44FAA]
gi|397350127|gb|EJJ43217.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397353932|gb|EJJ46999.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397355464|gb|EJJ48463.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397367264|gb|EJJ59876.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397369581|gb|EJJ62181.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397371915|gb|EJJ64423.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397382214|gb|EJJ74377.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397386168|gb|EJJ78254.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397390773|gb|EJJ82671.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397400090|gb|EJJ91736.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397400534|gb|EJJ92175.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397405734|gb|EJJ97180.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397418551|gb|EJK09709.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397419335|gb|EJK10484.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397425390|gb|EJK16269.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397433661|gb|EJK24305.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397434507|gb|EJK25142.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397442426|gb|EJK32777.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397448469|gb|EJK38643.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397453442|gb|EJK43502.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|407806668|gb|EKF77919.1| Ribonuclease BN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410116478|emb|CCM82011.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410120628|emb|CCM89100.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426296308|gb|EKV58967.1| ribonuclease Z [Klebsiella pneumoniae VA360]
gi|427541923|emb|CCM92111.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 306
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 32/235 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLKSSGTEITYT------------VTTP--EVAFTGDTMSDFIVDEANIDVLRARIL 213
+LK G +T TP +A GDT +A A ++
Sbjct: 174 LFHQLKR-GQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVM 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 230 VHETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|390960643|ref|YP_006424477.1| ribonuclease Z [Thermococcus sp. CL1]
gi|390518951|gb|AFL94683.1| ribonuclease Z [Thermococcus sp. CL1]
Length = 314
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQL---------FEVHRR 107
+FI+H H DH GL + T L+ R KP I P E V+ FEVH
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGPKYTFEFVQHFLQSGFFRPGFEVHVH 116
Query: 108 MDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQE 160
++GE D + +FK H I + GYV + +KL Q
Sbjct: 117 -------------ELGETRLRFGDYEIWSFKVEHGIPALGYVFKEKDRRGRFLPEKLAQY 163
Query: 161 YLGLPGDEIKKLKSSGTEITYT--------VTTP-----EVAFTGDTMSDFIVDEANIDV 207
L G + +L+ G +I + VT P +V +TGDT + +
Sbjct: 164 GLS-EGPVLGRLEREG-KIEWNGRIIRLEDVTGPRRKGVKVVYTGDTGP---AERTRLFA 218
Query: 208 LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
RA +L+ ++TY+ E H+ + E E A K + L H + R+ DE
Sbjct: 219 ERADLLIHDATYLSQGDRGESY----HSTVEEACEIARNARVKLLALFHRAFRYTYDE 272
>gi|358068061|ref|ZP_09154531.1| ribonuclease Z [Johnsonella ignava ATCC 51276]
gi|356693605|gb|EHI55276.1| ribonuclease Z [Johnsonella ignava ATCC 51276]
Length = 303
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 53/286 (18%)
Query: 40 DLAFDIGRCPSRALSQ--------NFLFISHAHMDHI-GGLPMYVATRGLYRMKPPTIIV 90
+L D G ALSQ + + +H H DHI G + + R++P T+I
Sbjct: 31 NLLIDCGEGTQIALSQKGWSPRPIDVICFTHYHADHIGGLPGLLLTLGNAQRIEPVTLIG 90
Query: 91 PSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF------VKAFKTYHVIQ 144
P + V L R EL +V ++ E ++++F ++AFK H I
Sbjct: 91 PKGLCRVVGAL-----RSIAPELPFEIVYKEIEE----KEEVFYIGPYKIEAFKVEHRIL 141
Query: 145 SQGYVVYSVKQK-----LKQEYLGLPGDEIKKLKS-------SGTEITYTVTTPE----- 187
GY + S+ +K LK + L +P KL++ SG V PE
Sbjct: 142 CYGYTI-SIPRKGRFNALKAKELNIPLKFWNKLQNGESIEDISGIYTPDMVMGPERRGLK 200
Query: 188 VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF 247
V + DT ++++ A + + E Y +D E AR++ H + E E A+K
Sbjct: 201 VCYCTDTRPVPVIEKY---AQGADLFICEGMYGEDGKE-ENAREHKHMTMYEAAEIAKKA 256
Query: 248 ENKAILLIHFSARHK-----VDEIRRAVDAVPAPLAGRVFALTEGF 288
+ K + L H+S +D++R+ P G ++L GF
Sbjct: 257 QPKMLWLTHYSPSMNKPDEYLDDLRKIFPYTKTPRDG--WSLELGF 300
>gi|433776744|ref|YP_007307211.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Mesorhizobium australicum WSM2073]
gi|433668759|gb|AGB47835.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Mesorhizobium australicum WSM2073]
Length = 302
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDV-EQLFEVHRRMDHSELNHT 116
L ++HAH DH+ G+P +T L + K I S DV ++ + +
Sbjct: 58 LLLTHAHFDHVLGIPGLFSTLRLRQSKNHVTIYGSADTLDVVARMLAGLWGEGRAPIPLQ 117
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQGYVVYS-VKQKLKQE---YLGLPGDEIKK 171
LV L G F + + V F+ H S G+V + ++ L+ + LG+P I+K
Sbjct: 118 LVPLAPGRVFEV-DEFTVDCFQVRHRDTDSYGFVFETPARRHLRSDRLAALGVPDGPIRK 176
Query: 172 LKSSGTEITY----------TVTTPE----VAFTGDT-MSDFIVDEANIDVLRARILVME 216
+ G I+ + PE + GD +D + D+ V A +LV+E
Sbjct: 177 DLAEGRSISLPDGRTIAPEAVLGPPEAGKKLVIVGDAETTDGLADK----VSGADLLVIE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+T++ + ARDYGH +E A + K ++L H S R+ +EI
Sbjct: 233 ATFLQRDAAM--ARDYGHLTAAEAASLAATSDVKQLVLTHISGRYYDEEI 280
>gi|228992885|ref|ZP_04152810.1| Ribonuclease Z [Bacillus pseudomycoides DSM 12442]
gi|228766934|gb|EEM15572.1| Ribonuclease Z [Bacillus pseudomycoides DSM 12442]
Length = 307
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 37/232 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGY--VVYSVKQKLKQEYL---GL-PGDE 168
L +++ EE + +D V+ + H I+ GY V ++ L E L G+ PG
Sbjct: 115 LEIVEITEEGIVFEDKQFHVETKRLSHGIECFGYRIVEKDIQGHLLVEKLLEAGVKPGPI 174
Query: 169 IKKLKSS------------GTEITYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARI 212
K+LK G + + P+ + GDT + + I A I
Sbjct: 175 FKRLKDGEVVELEDGRVLHGKDF---IGPPQKGRIITILGDTR---YCEASKILAQDADI 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
LV E+T+ QA DY H+ + A + K ++L H S+R++ D
Sbjct: 229 LVHEATFAAADEI--QAHDYFHSTTEQAASIALQANVKRLILTHISSRYQAD 278
>gi|205373950|ref|ZP_03226751.1| ribonuclease Z [Bacillus coahuilensis m4-4]
Length = 312
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 37/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P IKE + ++ + L +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGESPVTVYGPRGIKEYILTSL----KISGTYLKYP 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQ----------EYLGLP- 165
L L++ E + +D F+ + G Y + + K E LG+P
Sbjct: 115 LHILEIEESGIIFED---DQFRVITALLEHGLPSYGFRIEEKDRPGELLVEKLESLGIPK 171
Query: 166 GDEIKKLKS------SGTEITY--TVTTPE-----VAFTGDTMSDFIVDEANIDVLRARI 212
G + +KLK+ S I + VT P+ V GDT + A + A +
Sbjct: 172 GPQYRKLKALESIELSDGRIVHGIDVTGPKKQGRIVTILGDTRP---CENALMLSRHADV 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV E+T+ + E A+++ H+ + VE A + K +LL H S+R+
Sbjct: 229 LVHEATF--STGNEEMAKEFYHSTSGQAVETAIRAGAKRLLLNHISSRY 275
>gi|410977720|ref|XP_003995249.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Felis catus]
Length = 363
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P+ +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKEFTHVNKTDSLPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ + K ++L HFS R+K + R
Sbjct: 293 TPQMAAAFAKLCQAKRLVLTHFSQRYKPVALAR 325
>gi|298242824|ref|ZP_06966631.1| ribonuclease Z [Ktedonobacter racemifer DSM 44963]
gi|297555878|gb|EFH89742.1| ribonuclease Z [Ktedonobacter racemifer DSM 44963]
Length = 303
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 97/255 (38%), Gaps = 40/255 (15%)
Query: 43 FDIG---RCPSRALSQNF-----LFISHAHMDHIGGLP---MYVATRGLYRMKPPTIIVP 91
FD G + P + L F + SH H DH+ GLP VA G R +P I P
Sbjct: 34 FDCGEGTQIPWKTLGWGFRQLGAICFSHMHADHVAGLPGVLFMVAHAG--RTEPLDIYGP 91
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ VE L + + H G GE F + +L H I Y V
Sbjct: 92 AGTSYVVEGLRRIAAELPFPIHIHEFKG---GEHFQLPGNLQASCAPASHGIPCLAYRVE 148
Query: 152 SVKQKLKQ----EYLGLPGDEIKKLKSSGTEITYT--VTTPE-----------VAFTGDT 194
+Q Q L +P K+L+ +G ++Y TP+ +A+ DT
Sbjct: 149 LQRQPAFQVEQARALDIPVQFWKRLQ-TGETVSYNERTFTPQDVLGAARRGIALAYITDT 207
Query: 195 MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ E DV +LV ES Y D + AR H SE A ++L
Sbjct: 208 RPQSALSELAHDV---DLLVCESMY-DTLDDLPLARSNAHMVASESAGIARDAGAHQLVL 263
Query: 255 IHFSARHKVDEIRRA 269
HFS KV++ RA
Sbjct: 264 THFSP--KVNDTTRA 276
>gi|375262037|ref|YP_005021207.1| ribonuclease Z [Klebsiella oxytoca KCTC 1686]
gi|365911515|gb|AEX06968.1| ribonuclease Z [Klebsiella oxytoca KCTC 1686]
Length = 306
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 30/243 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
R P N +FI+H H DH+ GLP + +R + P T+ P +K VE
Sbjct: 49 RTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKAFVETAL--- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
R+ S ++ L ++VG + + F V A+ H ++ GY + + + L
Sbjct: 106 -RLSGSWTDYPLTIIEVGPGLVLDEAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAAQL 164
Query: 165 ------PGDEIKKLKSS-------GTEITYT----VTTP--EVAFTGDTMSDFIVDEANI 205
PG ++LK G I + TP ++A GDT E
Sbjct: 165 IAEGVPPGPLFQRLKQGLTVELEDGRRIDGSRYLGPATPGKKLAIFGDTAPCEAARELAC 224
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
V ++V E T + E+A GH+ + A ++ HFS+R+ +
Sbjct: 225 GV---DVMVHEVTL--EQAMAEKANSRGHSTSQQTAALARDAGVGTLIATHFSSRYDAEG 279
Query: 266 IRR 268
+R
Sbjct: 280 CQR 282
>gi|375148128|ref|YP_005010569.1| Ribonuclease Z [Niastella koreensis GR20-10]
gi|361062174|gb|AEW01166.1| Ribonuclease Z [Niastella koreensis GR20-10]
Length = 303
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 36/244 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVE-QLFEVHRRMDHSEL 113
N++FISH H DH GLP + + G L+R + P+ +K+ ++ QL ++ +
Sbjct: 55 NYIFISHLHGDHYFGLPGLLHSMGLLHRENELHLFAPAPLKQILDLQLEAASNQLSYPLY 114
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPG 166
H L GE ++ D F V F T H I G+ V+ + EY G+P
Sbjct: 115 FHPL----EGEGVIVQNDKFRVTCFATKHRIPCWGFRFDQVRAPRRVNPEKAIEY-GVPA 169
Query: 167 DEIKKLKSSGTEITYT--------VTTPEV-----AFTGDTMSDFIVDEANIDVLRA-RI 212
+LK T + VT P V A+ DT I DE I+ ++ +
Sbjct: 170 AFYDRLKWGEDYTTKSGELIENELVTNPGVKPLSYAYCADT----IYDEELIEKVKGVDL 225
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI--RRAV 270
L E+TY+ D R H+ + A+ +L+ HFS+++ E+ + A+
Sbjct: 226 LYHETTYLKDLEMRAAMR--FHSTTQQAARIAKNANVGRLLIGHFSSKYDKLEVFEQEAI 283
Query: 271 DAVP 274
+ P
Sbjct: 284 EVFP 287
>gi|228998930|ref|ZP_04158514.1| Ribonuclease Z [Bacillus mycoides Rock3-17]
gi|229006461|ref|ZP_04164115.1| Ribonuclease Z [Bacillus mycoides Rock1-4]
gi|228754789|gb|EEM04180.1| Ribonuclease Z [Bacillus mycoides Rock1-4]
gi|228760846|gb|EEM09808.1| Ribonuclease Z [Bacillus mycoides Rock3-17]
Length = 307
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 37/232 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R P T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGY--VVYSVKQKLKQEYL---GL-PGDE 168
L +++ EE + +D V+ + H I+ GY V ++ L E L G+ PG
Sbjct: 115 LEIVEITEEGIVFEDKQFHVETKRLSHGIECFGYRIVEKDIQGHLLVEKLLEAGVKPGPI 174
Query: 169 IKKLKSS------------GTEITYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARI 212
K+LK G + + P+ + GDT + + I A I
Sbjct: 175 FKRLKDGEVVELEDGRVLHGKDF---IGPPQKGRIITILGDTR---YCEASRILAQDADI 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
LV E+T+ QA DY H+ + A + K ++L H S+R++ D
Sbjct: 229 LVHEATFAAADEI--QAHDYFHSTTEQAASIALQANVKRLILTHISSRYQAD 278
>gi|401681635|ref|ZP_10813533.1| ribonuclease Z [Streptococcus sp. AS14]
gi|400186021|gb|EJO20240.1| ribonuclease Z [Streptococcus sp. AS14]
Length = 309
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 28/240 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V L R+ + +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLDIYGPIGIKSFVLSSLRASGSRLPYRIV 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY V ++ L + L G+P G
Sbjct: 119 FHEFDENGLGK--ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P T + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTITILGDTRKTAASVRLAVAADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAVDAV 273
+TY + AR++GH+ + E A++ K +LL H SAR + ++RR AV
Sbjct: 237 ATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQMRRDASAV 294
>gi|448312447|ref|ZP_21502191.1| ribonuclease Z [Natronolimnobius innermongolicus JCM 12255]
gi|445601522|gb|ELY55510.1| ribonuclease Z [Natronolimnobius innermongolicus JCM 12255]
Length = 312
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 38/251 (15%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R P I P
Sbjct: 28 ELLFDAGEGTQRQMMRYGTGFSVSHLFVTHLHGDHVLGIPGLLQTMDFNDREAPLAIHTP 87
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ + ++ L + + VG + R D + V+AF T H +S GY +
Sbjct: 88 AGTRRQLKGLVNALGNRPSFPVRISEVG---DGDVAYRADEYEVRAFATDHDTRSVGYAL 144
Query: 151 YSVKQK-----LKQEYLGLP-GDEIKKLKSS-------GT--EITYTVTTPE----VAFT 191
++K + E LG+P G + KL + GT E V P + +T
Sbjct: 145 VEDERKGRFDRERAEELGVPVGPKFSKLHAGEPVELEDGTVVEPDQVVGDPRPGRSIVYT 204
Query: 192 GDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
GDT A I+V +L+ ++T+ DD ++A H+ + E A +
Sbjct: 205 GDTRP----TAAAIEVANEPDLLIHDATFADDR--ADRAAKTAHSTARQAAEIANRAAAD 258
Query: 251 AILLIHFSARH 261
+ L+H S+R+
Sbjct: 259 RLALVHISSRY 269
>gi|425450509|ref|ZP_18830334.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 7941]
gi|389768627|emb|CCI06326.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 7941]
Length = 289
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 30/220 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPSCIKEDVEQLFEVHRRMDHSELNHT 116
LF SH+H DHI G P ++ R I +PS ++Q +H +M H
Sbjct: 68 LFFSHSHWDHIQGFPFFIPA--FIRGNTFKIYGIPSANGVTIKQ--RLHDQMSHPNFP-- 121
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIK-KLKSS 175
V L + MR DL + Y++ G +Y ++ L PG+ + ++
Sbjct: 122 -VPLQI-----MRADL-----EFYNL--EMGKTLYCADFTVETRPLNHPGEAVGYRVNWQ 168
Query: 176 GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD--YG 233
G Y T D D ++ A +A ++++++TY D+ + +G
Sbjct: 169 GLSAAYITDTEHFP---DRFDDNVLALAQ----QADVMIIDATYTDEEYNDPKYSKVGWG 221
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
H+ + V+ A+ + K ++L H H D + R + V
Sbjct: 222 HSTWQQAVKIAQASQVKQLVLFHHDPAHNDDFLDRIGEQV 261
>gi|288905016|ref|YP_003430238.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Streptococcus gallolyticus UCN34]
gi|288731742|emb|CBI13303.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Streptococcus gallolyticus UCN34]
Length = 309
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T + P I+ + + R+
Sbjct: 59 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLDVYGPIGIRSYILNSLRLSGVRLPYRIH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L E L G
Sbjct: 119 FHEFDENSLGK------VMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+KS GT+I ++ P+ + D +A++ + L A I
Sbjct: 173 VPFGPLFGKIKSGQDVILEDGTKIIAKDYISAPKKGKIITILGDTRKTDASVRLGLGADI 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR +GH+ + + A++ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--ARKHGHSTNMQAAQIAKEASAKMLLLNHISAR 278
>gi|284990766|ref|YP_003409320.1| beta-lactamase domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284064011|gb|ADB74949.1| beta-lactamase domain protein [Geodermatophilus obscurus DSM 43160]
Length = 306
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 33/237 (13%)
Query: 49 PSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEV--- 104
PS A++ L ISH H DH G+P V L R+ P + P+ ++ +L
Sbjct: 52 PSSAVTH--LCISHFHGDHCLGVPGVVQRMSLDRVAHPVSAHFPASGRDHFGRLRAASVF 109
Query: 105 HRRMDHSELNHTLVG-LDVGEEFCMRKDLFVKAFKTYHVIQSQGY-VVYSVKQKLKQEYL 162
H +D E T G + G + + +A + H++++ GY +V +++ E L
Sbjct: 110 HDVLDLREEPLTADGPVASGPSWTL------EARRLDHLVETFGYRLVEPDGRRMLPEQL 163
Query: 163 ---GLPGDEIKKLKSSGT-----------EITYTVTTPEVAFTGDTMSDFIVDEANIDVL 208
G+ G ++ +L+ G+ E++ VAF DT + D
Sbjct: 164 ARAGVAGPDVGRLQREGSLDVGGRTVRLEEVSAHRPGQRVAFVMDTR---LCDAVPALAD 220
Query: 209 RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
A +LV+EST++++ + AR YGH + A + + ++L HFS R+ E
Sbjct: 221 GADLLVIESTFLEEDAAL--ARAYGHLTARQAATVAAECGVRTLVLTHFSQRYPDPE 275
>gi|306831089|ref|ZP_07464250.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325977984|ref|YP_004287700.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|386337465|ref|YP_006033634.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
gi|304426655|gb|EFM29766.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325177912|emb|CBZ47956.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|334280101|dbj|BAK27675.1| ribonuclease Z [Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
Length = 309
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T + P I+ + + R+
Sbjct: 59 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLDVYGPIGIRSYILNSLRLSGARLPYRIH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L E L G
Sbjct: 119 FHEFDENSLGK------VMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+KS GT+I ++ P+ + D +A++ + L A I
Sbjct: 173 VPFGPLFGKIKSGQDVILEDGTKIIAKDYISAPKKGKIITILGDTRKTDASVRLGLGADI 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR +GH+ + + A++ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--ARKHGHSTNMQAAQIAKEASAKMLLLNHISAR 278
>gi|423615521|ref|ZP_17591355.1| ribonuclease Z [Bacillus cereus VD115]
gi|401260058|gb|EJR66231.1| ribonuclease Z [Bacillus cereus VD115]
Length = 307
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIK----QFIEVALSVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL-------GL-PG 166
L +++ EE + +D +V+ K H I+ GY + V++ ++ L G+ PG
Sbjct: 115 LEIVEITEEGTVFEDNEFYVETKKLSHGIECFGYRI--VEKDIQGVLLVDKLLEMGVKPG 172
Query: 167 DEIKKLK-------SSGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVME 216
K+LK +GT + + P+ + D EA+ ++ + A +LV E
Sbjct: 173 PIFKRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHE 232
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+T+ + +QA DY H+ + A K ++L H S+R++ D
Sbjct: 233 ATFAAEDE--QQAHDYFHSTSKQAASIALHANAKRLILTHISSRYQGD 278
>gi|421874708|ref|ZP_16306310.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
gi|372456383|emb|CCF15859.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
Length = 314
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DH+ GL +A+R L + I + P I E V+ + R+ L +
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIM----RISPVHLQY 113
Query: 116 TLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLP-G 166
L+ + V EE + +D + V+A K H + + Y + + K +L +E G+P G
Sbjct: 114 PLI-IKVVEEGIIYEDDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKE-AGIPKG 171
Query: 167 DEIKKLKSSGTEITYT---------VTTPE----VAFTGDTMS-DFIVDEANIDVLRARI 212
+LK+ GT V P+ VAF+GDT+ +V A A +
Sbjct: 172 PMYAQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRLAQ----GADM 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
LV ESTYV +E A GH+ + E A E K +LL H S R+ +++
Sbjct: 228 LVHESTYVHQH--LELAERSGHSTAKQAAEIAVAAEAKGLLLTHLSPRYDIED 278
>gi|339010408|ref|ZP_08642978.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
gi|338772563|gb|EGP32096.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
Length = 314
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DH+ GL +A+R L + I + P I E V+ + R+ L +
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIM----RISPVHLQY 113
Query: 116 TLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVY------SVKQKLKQEYLGLP-G 166
L+ + V EE + +D + V+A K H + + Y + + K +L +E G+P G
Sbjct: 114 PLI-IKVVEEGIIYEDDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKE-AGIPKG 171
Query: 167 DEIKKLKSSGTEITYT---------VTTPE----VAFTGDTMS-DFIVDEANIDVLRARI 212
+LK+ GT V P+ VAF+GDT+ +V A A +
Sbjct: 172 PMYAQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRLAQ----GADM 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
LV ESTYV +E A GH+ + E A E K +LL H S R+ +++
Sbjct: 228 LVHESTYVHQH--LELAERSGHSTAKQAAEIAVAAEAKGLLLTHLSPRYDIED 278
>gi|448354495|ref|ZP_21543251.1| ribonuclease Z [Natrialba hulunbeirensis JCM 10989]
gi|445637383|gb|ELY90533.1| ribonuclease Z [Natrialba hulunbeirensis JCM 10989]
Length = 311
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 45/266 (16%)
Query: 40 DLAFDIGRCPSRAL-------SQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
+L FD G R + S + LF++H H DH+ G+P + T R +P + P
Sbjct: 32 ELLFDAGEGTQRQMMRFGTGFSISHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAVHTP 91
Query: 92 SCIKEDVEQLFEV--HRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY 148
+ ++ L +R +N G + R D + ++ F T H S GY
Sbjct: 92 HGTRRQLKGLVNALGNRPSFPVRINEVGDG-----DVAYRADEYEIRTFGTDHDTNSVGY 146
Query: 149 VVYSVKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------V 188
+ +K + E LG+P G + KL +G + TV PE +
Sbjct: 147 ALVEDDRKGRFDRERAEELGVPVGPKFSKLH-NGEPVELEDGTVVDPEQVVGEPRPGRSL 205
Query: 189 AFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE 248
+TGDT EA + +L+ ++T+ +D ++A H+ + E A +
Sbjct: 206 VYTGDTRPTVATIEAADE---PDLLIHDATFAEDR--ADRAAKTAHSTARQAAEIANRAG 260
Query: 249 NKAILLIHFSAR---HKVDEIRRAVD 271
+ L+H S+R H D + A D
Sbjct: 261 ADRLALMHISSRYAGHTGDHLAEARD 286
>gi|383775954|ref|YP_005460520.1| putative ribonuclease Z [Actinoplanes missouriensis 431]
gi|381369186|dbj|BAL86004.1| putative ribonuclease Z [Actinoplanes missouriensis 431]
Length = 301
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 16/213 (7%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
I+H H DH GLP + L ++ P + P+ +E ++L D++E+ + V
Sbjct: 59 ITHFHGDHSLGLPGILQRVSLDKVPHPVAVHYPAGGQEFYDRLRHATSYWDNAEIVPSPV 118
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL----GLPGDEIKKLKS 174
G E C + + A H I++ GY + + L G+ G + +L+
Sbjct: 119 GAGFAVETCAGR---LTALPLRHSIEAYGYRLTEPDSRRILPALLVQHGIQGPAVGELQR 175
Query: 175 SGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-----RILVMESTYVDDSTTVEQA 229
+G T+ G + + F++D D + A +LV+EST++ + + A
Sbjct: 176 AGRLGEVTLEQVSTVRPGQSFA-FVMDTGLCDNVYALADGVDMLVIESTFLAEDAAM--A 232
Query: 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
GH + A + + ++L HFS R++
Sbjct: 233 AQVGHLTAGQAAAVARESGVRTLVLTHFSQRYQ 265
>gi|329768001|ref|ZP_08259512.1| hypothetical protein HMPREF0428_01209 [Gemella haemolysans M341]
gi|328838486|gb|EGF88094.1| hypothetical protein HMPREF0428_01209 [Gemella haemolysans M341]
Length = 306
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 31/239 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DH+ GL ++++R TI P IK+ +E + H L+
Sbjct: 59 IFISHLHADHVLGLIGFLSSRSFLLDTNASDVTIYGPVGIKDFIEN----NLLFTHCSLS 114
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLG-LPG 166
+++ +++ E C+ K + V ++ H I+ GY + KQK K + LG +PG
Sbjct: 115 YSVEYIEISSEQCIIDNKSVAVFSYPLAHNIECFGYKILFKKQKGSLDANKLKELGIMPG 174
Query: 167 DEIKKLKSSGT----EITYTVT--------TPEVAFTGDTMSDFIVDEANIDVLRARILV 214
+++K + T I Y + E++ DT D V + I++
Sbjct: 175 PFYREIKEADTFEFNGIMYNSSEFLSEDKPEKEISIIPDTR---YFDGLGEFVKNSNIII 231
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAV 273
E TY+ ++Y H + +I + + + +++ L H SAR+ + + A++++
Sbjct: 232 SECTYLLKEDAHHARKNY-HLSILDIEKIIAQSKVESLFLTHISARYDRNIEKEAIESL 289
>gi|306833195|ref|ZP_07466324.1| ribonuclease Z [Streptococcus bovis ATCC 700338]
gi|336063994|ref|YP_004558853.1| ribonuclease Z [Streptococcus pasteurianus ATCC 43144]
gi|304424562|gb|EFM27699.1| ribonuclease Z [Streptococcus bovis ATCC 700338]
gi|334282194|dbj|BAK29767.1| ribonuclease Z [Streptococcus pasteurianus ATCC 43144]
Length = 309
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV---PSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++A+R + T + P I+ V + R+
Sbjct: 59 IFITHLHGDHIFGLPGFLASRAFQANEEQTDLEFYGPIGIRSYVLNSLRLSGARLPYRIH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G M D F V A K H I GY V ++ L E L G
Sbjct: 119 FHEFDENSLGK------VMETDKFVVYAEKLDHTIFCIGYRVMQKDLEGTLDSEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+KS GT+I ++ P+ + D +A++ + L A I
Sbjct: 173 VPFGPLFGKIKSGQDVVLDDGTKIIAKDYISAPKKGKIITILGDTRKTDASVRLGLGADI 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR +GH+ + + A++ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--ARKHGHSTNMQAAQIAKEASAKMLLLNHISAR 278
>gi|383820158|ref|ZP_09975416.1| ribonuclease Z [Mycobacterium phlei RIVM601174]
gi|383335687|gb|EID14115.1| ribonuclease Z [Mycobacterium phlei RIVM601174]
Length = 311
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
L ++H H DH G+P V L K P P+ +E +L + +E+
Sbjct: 59 LCVTHFHGDHCLGVPGVVQRLSLDDAKHPVHAYFPASGREYFTRLRHASVFYERAEVRE- 117
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGY-VVYSVKQKLKQEYL---GLPGDEIKKL 172
V +D + + A + H I + GY +V + +++ E L GL G + +L
Sbjct: 118 -VPVDGDGAIAEGRFGVLYARRLDHPIDAVGYRLVEADRRRFVPELLARHGLGGPIVGEL 176
Query: 173 KSSG-----------TEITYTVTTPEVAFTGDT-MSDFIVDEANIDVLRARILVMESTYV 220
K +G ++T T + AF DT + D + + A+ A +LV+E+T++
Sbjct: 177 KRAGEITVGQRRIRLADVTVERTGQKFAFVMDTRLCDAVYELAD----GADMLVIEATFL 232
Query: 221 DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGR 280
D+ E A YGH S+ A + + ++L HFS R+ + RR D A G
Sbjct: 233 DEDA--ELADRYGHLTASQAGRVAAQCHVRRLVLTHFSQRYP--DTRRHRDQAAAHFGGD 288
Query: 281 VF 282
+
Sbjct: 289 IL 290
>gi|218548281|ref|YP_002382072.1| ribonuclease Z [Escherichia fergusonii ATCC 35469]
gi|218355822|emb|CAQ88435.1| binuclear zinc phosphodiesterase [Escherichia fergusonii ATCC
35469]
Length = 320
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + M+P TI P I+E VE + L+
Sbjct: 75 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSWTDYPLD-- 132
Query: 117 LVGLDVGE--EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
++ + GE + +RK V A+ H ++ G+ + ++ + GL PG
Sbjct: 133 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQPGPL 189
Query: 169 IKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDEANIDVLRARILVM 215
+ LK+ +G + T +V A GDT D A A +++
Sbjct: 190 FQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAP---CDNALELARHADVMIH 246
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV----D 271
E+T D + +A GH+ + A + +++ H S+R+ +R + D
Sbjct: 247 EATL--DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRYDDKGCQRMLQECRD 304
Query: 272 AVPA 275
PA
Sbjct: 305 IFPA 308
>gi|15679819|ref|NP_276937.1| hypothetical protein MTH1831 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|41017519|sp|O27859.1|RNZ_METTH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2622965|gb|AAB86297.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 307
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN-- 114
+FI+H H DHI G+P + + G R +P I P I E L E +M + L+
Sbjct: 57 IFITHLHGDHILGIPGMIQSMGFRGREEPLDIYGPPGIHE----LHECIMKMGYFTLDFD 112
Query: 115 ---HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYLGL---PG 166
H + G V EE D V + H + + Y K+ L+++ + L PG
Sbjct: 113 INVHEVRGGTVVEE----DDYRVTSAPASHSVFNLAYCFEEKKRPRFLREKAIALGLKPG 168
Query: 167 DEIKKL-KSSGTEITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLR-ARIL 213
KL + + + PE V ++GDT E+ I + A +L
Sbjct: 169 PAFGKLHRGIPVRVGDRIIMPEEVLGSPRKGVKVCYSGDTRPC----ESVIKLAEGAELL 224
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
+ EST ++ + ++A + GH+ E E A K ++L H S R+K E+
Sbjct: 225 IHESTL--EAGSEDKAAESGHSTAREAAEVARSAGVKRLILTHLSTRYKRTEV 275
>gi|422829667|ref|ZP_16877832.1| ribonuclease Z [Escherichia coli B093]
gi|371608651|gb|EHN97203.1| ribonuclease Z [Escherichia coli B093]
Length = 305
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVQPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVNVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|379727364|ref|YP_005319549.1| ribonuclease Z [Melissococcus plutonius DAT561]
gi|376318267|dbj|BAL62054.1| ribonuclease Z [Melissococcus plutonius DAT561]
Length = 310
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP +++R +I P +KE V+ R+ + L +
Sbjct: 59 IFITHLHGDHLFGLPGLLSSRSFQGGNEKLVIYGPRGVKEFVQTAL----RISKTRLAYE 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGD 167
L ++ EE + D V H I S GY + KLK+ LG+P
Sbjct: 115 LSFHEIDEEGIVFSDEQFTVICRLLEHGITSYGYRIVERDHEGELQVDKLKE--LGIPSG 172
Query: 168 ----EIKKLKSSGTEITYTVTTPE----------VAFTGDTMS--DFIVDEANIDVLRAR 211
+IKK ++ + + E V GDT + I N DVL
Sbjct: 173 PLYGKIKKGETVTLKDGQVINGKEFVGQRKKGRVVTILGDTRKTLNSIKLAENADVL--- 229
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+ EST+ D + AR Y H+ + E A+K K ++L H SAR+
Sbjct: 230 --IHESTFNKDEAKM--ARAYYHSTSEQAAEVAKKANAKQLILTHISARY 275
>gi|424815675|ref|ZP_18240826.1| ribonuclease Z [Escherichia fergusonii ECD227]
gi|325496695|gb|EGC94554.1| ribonuclease Z [Escherichia fergusonii ECD227]
Length = 305
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + M+P TI P I+E VE + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSWTDYPLD-- 117
Query: 117 LVGLDVGE--EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGDE 168
++ + GE + +RK V A+ H ++ G+ + ++ + GL PG
Sbjct: 118 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQPGPL 174
Query: 169 IKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDEANIDVLRARILVM 215
+ LK+ +G + T +V A GDT D A A +++
Sbjct: 175 FQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAP---CDNALELARHADVMIH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T D + +A GH+ + A + +++ H S+R+ +R
Sbjct: 232 EATL--DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRYDDKGCQR 282
>gi|432489948|ref|ZP_19731822.1| ribonuclease Z [Escherichia coli KTE213]
gi|432839956|ref|ZP_20073442.1| ribonuclease Z [Escherichia coli KTE140]
gi|433203888|ref|ZP_20387663.1| ribonuclease Z [Escherichia coli KTE95]
gi|431020565|gb|ELD33910.1| ribonuclease Z [Escherichia coli KTE213]
gi|431389129|gb|ELG72844.1| ribonuclease Z [Escherichia coli KTE140]
gi|431721067|gb|ELJ85066.1| ribonuclease Z [Escherichia coli KTE95]
Length = 305
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEI 169
+V + GE F +RK V A+ H ++ GY + + L + L G+P +
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 170 KKLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ +G IT V +A GDT +A +D+ + ++V
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|425436879|ref|ZP_18817309.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 9432]
gi|389678308|emb|CCH92800.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 9432]
Length = 289
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPSCIKEDVEQLFEVHRRMDHSELNHT 116
LF SH+H DHI G P ++ R I +PS ++Q +H +M H
Sbjct: 68 LFFSHSHWDHIQGFPFFIPA--FIRGNTFKIYGIPSANGVTIKQ--RLHDQMSHPNFP-- 121
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIK-KLKSS 175
V L + MR DL + Y++ G +Y ++ L PG+ + ++
Sbjct: 122 -VPLQI-----MRADL-----EFYNL--EMGKTLYCADFTVETRPLNHPGEAVGYRVNWQ 168
Query: 176 GTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD--YG 233
G Y T D D ++ A +A ++++++TY D+ + +G
Sbjct: 169 GLSAAYITDTEHFP---DRFDDNVLALAR----QADVMIIDATYTDEEYNDPKYSKVGWG 221
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFA 283
H+ + V+ A+ + K ++L H H D + R + V L + A
Sbjct: 222 HSTWQQAVKIAQAAQVKQLVLFHHDPAHNDDFLDRIGEQVRKILPQTILA 271
>gi|327405262|ref|YP_004346100.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
gi|327320770|gb|AEA45262.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
Length = 303
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 32/229 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N + ISH H DH GL ++++ L R K TI P E++EQ+ + + + L
Sbjct: 56 NHILISHLHGDHFFGLVGFLSSMHLLGRDKGLTIYGP----EELEQIIRLQLEVGGARLG 111
Query: 115 HTL--VGLDVGEEFCMRKDLFVK--AFKTYHVIQSQGYVVYSV--KQKLKQEYL---GLP 165
L V L+ E + +D ++ F H I + G+++ +KL E GL
Sbjct: 112 FELNFVALNGKENRLLFEDKIIEIWTFPLSHRIPTNGFLIKEKPRDRKLNAELFEEAGLS 171
Query: 166 GDEIKKLKSSGTEITYTVTTPEVAFTGDTM------------SDFIVDEANIDVLR-ARI 212
I KLK I + + EV + + SD I DE + ++ +
Sbjct: 172 LTLIPKLKQG---IDVELDSGEVIYADEYTYPAKPSRSYGYCSDTIYDERIVAYVKHVNL 228
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
L E+T++DD +++A+ H+ S+ A++ E +LL H SAR+
Sbjct: 229 LYHEATFLDDK--LDRAKQTFHSTASQAASIAKQAEVGKLLLGHLSARY 275
>gi|429105458|ref|ZP_19167327.1| Ribonuclease Z [Cronobacter malonaticus 681]
gi|426292181|emb|CCJ93440.1| Ribonuclease Z [Cronobacter malonaticus 681]
Length = 324
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + P I P I E VE R+ S ++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTL----RLSGSWTSYP 134
Query: 117 LVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPGDE 168
L ++ E + ++ V A+ H ++ GY + + +LK + PG
Sbjct: 135 LHVHEITEGQLSDDGEIIVTAYPLTHPVECYGYRIEEHDKPGALDAARLKAAGV-TPGPL 193
Query: 169 IKKLKSSGTEITYTVTTPE------------------VAFTGDTMSDFIVDEANIDVLRA 210
++LK TVT P+ +A GDT DV
Sbjct: 194 FQQLKRG-----ETVTLPDGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVNLARDV--- 245
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
++V E+T ++ E+A GH+ + A K +L+ HFS+R+ ++ +R
Sbjct: 246 DVMVHETTL--EAAMAEKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYSAEDCQR 301
>gi|257054875|ref|YP_003132707.1| ribonuclease Z [Saccharomonospora viridis DSM 43017]
gi|256584747|gb|ACU95880.1| RNAse Z [Saccharomonospora viridis DSM 43017]
Length = 306
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 49 PSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRM 108
P+ A++ + ++H H DH GLP + L + P+ +E E+L
Sbjct: 52 PASAITH--VCLTHFHGDHCLGLPGVIQRLSLDGVHRVHAHYPASGQEYFERLRHASSFH 109
Query: 109 DHSELNHTLVGLD-------VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEY 161
+ +E+ + D GE + R D V+AF Y +++ + +L + Y
Sbjct: 110 ETTEVVEVPIAADGVVAQGDFGELWARRLDHPVEAFG-YQLVEPDRRTMLP---RLLRHY 165
Query: 162 LGLPGDEIKKLKSSGT----EITYTVTTPEVAFTGDTMSDFIVDEANIDVL-----RARI 212
G+ G ++ +L+ +GT T V V G + F++D D + +A +
Sbjct: 166 -GISGADVGRLRRAGTLDVNGRTVNVEDVSVLRAGQRFA-FVMDTRLCDNVFALAEKADL 223
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
LV+EST++ +T E A +YGH + A + + ++L HFS R+
Sbjct: 224 LVIESTFL--TTEAELAEEYGHLTARQAARVAAESAVRTLVLTHFSQRY 270
>gi|196231345|ref|ZP_03130204.1| ribonuclease Z [Chthoniobacter flavus Ellin428]
gi|196224681|gb|EDY19192.1| ribonuclease Z [Chthoniobacter flavus Ellin428]
Length = 335
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 108/275 (39%), Gaps = 62/275 (22%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
LF SH HMDH+ G + KP I P ++ F+ H EL+ +
Sbjct: 53 LFFSHLHMDHVSGFDSFFRCTFNRPTKPNRIWGPPETARILQHRFQGFLWNLHEELSASW 112
Query: 118 V------------GLDVGEEFCMRKDLFVKAFKTYHVIQSQGY-------------VVYS 152
+ G + E F + D + + +++ GY + Y
Sbjct: 113 LVSDIHPGEIRTTGFEAREAFAISHDRGTQPYDRI-ILEGAGYSMEAITMDHRTPTLAYV 171
Query: 153 VKQKLKQEY-------LGL-PGDEIKKLKSSGTEITYTVTTPEVAFT------------- 191
V++K ++ LGL PG +K+LK S + +V VA +
Sbjct: 172 VREKPRRNIDTSRLASLGLRPGAWLKELKDSANS-SDSVVVDGVARSKEELRKELLVETP 230
Query: 192 GDT---MSDFIVDEANI----DVLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEY 243
GD+ ++DF++DE I D LR R++V E Y + ++ AR + H
Sbjct: 231 GDSIAYLTDFVLDEPAIERLTDALRGCRVMVCEGQY--RHSDLDLARKHFHMTTVLSATV 288
Query: 244 AEKFENKAILLIHFSARHKVDE----IRRAVDAVP 274
A++ + ++L H S R++ E +R A P
Sbjct: 289 AKRARVEELILFHVSCRYESSEWVEMLREASQVFP 323
>gi|420152931|ref|ZP_14659936.1| putative ribonuclease Z [Actinomyces massiliensis F0489]
gi|394762674|gb|EJF44871.1| putative ribonuclease Z [Actinomyces massiliensis F0489]
Length = 303
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 34/233 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ ++H H DH GLP + L ++ P T++ P +E V++L D ++L
Sbjct: 57 QIICLTHLHGDHCLGLPGVLQRISLDQVPHPVTLVYPVSGQEYVDRLRAASIYHDRTDLR 116
Query: 115 HTLVGLDVGEE---FCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL----KQEYLGLPGD 167
L+ ++VG E L + A H + + GY V ++ G+ G
Sbjct: 117 --LLPVEVGAEPAEILRLSGLILHAAALDHRVDAIGYRVQDAPGRVFDTGALAARGIAGP 174
Query: 168 EIKKLKSSGT-----------EITYTVTTPEVAFTGDTM----SDFIVDEANIDVLRARI 212
+ +L G E+T T A DT ++ + D ++
Sbjct: 175 LVGRLHREGRVSVDGVITRLEEVTRERTPASFALVQDTRPCRGAELLADGVDL------- 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
L+ME+TY+ D +AR+YGH+ + A + + L HFS+R+ E
Sbjct: 228 LMMEATYLSD--LAGKAREYGHSTALDAGRVAAAAGVRRLALTHFSSRYGSTE 278
>gi|394992227|ref|ZP_10385017.1| ribonuclease Z [Bacillus sp. 916]
gi|393806957|gb|EJD68286.1| ribonuclease Z [Bacillus sp. 916]
Length = 308
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 32/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + TI P IK +E V + L +
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV----TATHLTYP 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLPGDEIK 170
L ++ + + F V A H +++ GY V Q + + + +P +
Sbjct: 115 LTVHEIEQGTVFEDEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIPPGPVY 174
Query: 171 KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLR-ARILVM 215
+ G +T + P+ VAF+GDT V E ++ R A +LV
Sbjct: 175 QKIKKGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTR----VSERVTELARNADVLVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + + A +Y H + + A+K K ++L H SAR++
Sbjct: 231 EATFAKEDAKL--AHNYYHATTEQAAQTAKKAGAKRLILTHISARYQ 275
>gi|422974439|ref|ZP_16976349.1| ribonuclease Z [Escherichia coli TA124]
gi|371595818|gb|EHN84665.1| ribonuclease Z [Escherichia coli TA124]
Length = 311
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 39/245 (15%)
Query: 39 LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKED 97
L AF+ G+ N +FISH H DH+ GLP + +R + ++P TI P I+E
Sbjct: 54 LHTAFNPGKL-------NKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREF 106
Query: 98 VEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVK 154
VE R+ S ++ L +++G + L V A+ H ++ GY + +
Sbjct: 107 VETAL----RISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKP 162
Query: 155 QKLKQEYL---GLPGDEIKKLKSSGTEITY--------------TVTTPEVAFTGDTMSD 197
L + L G+P + + +G IT V +A GDT
Sbjct: 163 GALNAQALKAAGVPPGPLFQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP- 221
Query: 198 FIVDEANIDVLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
+A +D+ + ++V E+T D T +A GH+ + A + +++ H
Sbjct: 222 ---CDAALDLAKGVDVMVHEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITH 276
Query: 257 FSARH 261
S+R+
Sbjct: 277 VSSRY 281
>gi|417793857|ref|ZP_12441125.1| ribonuclease Z [Streptococcus oralis SK255]
gi|334271916|gb|EGL90295.1| ribonuclease Z [Streptococcus oralis SK255]
Length = 309
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLDIYGPQGIKSFVLTSLRVSGSRLPYRIY 118
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTY-----HVIQSQGYVVYS--VKQKLKQEYL---G 163
H ++ + K L + F Y H I GY + ++ L E L G
Sbjct: 119 FHEF------DQASLGKILETEKFTVYAEELDHTIFCVGYRIMQKDLEGTLDAEKLKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GTEI ++ P + D A++ + + A +
Sbjct: 173 VPFGPLFGKIKNGQDVVLEDGTEIKAADYISAPRPGKIITILGDTRKTNASVRLAVNADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR++GH+ + + AE+ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--ARNHGHSTNMQAAQVAEEAGVKRLLLNHISAR 278
>gi|418321650|ref|ZP_12932989.1| putative ribonuclease Z [Staphylococcus aureus subsp. aureus
VCU006]
gi|365224265|gb|EHM65530.1| putative ribonuclease Z [Staphylococcus aureus subsp. aureus
VCU006]
Length = 177
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R KP T++ P IK V E+ + S LN+
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYV----EMSMNLSESHLNY 114
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ +++ + D F V+A H I S GY V
Sbjct: 115 PITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRV 150
>gi|330508370|ref|YP_004384798.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
gi|328929178|gb|AEB68980.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
Length = 445
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 53/239 (22%)
Query: 43 FDIGRCPSRALSQNF------LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVP---SC 93
+IG P ++ +N + +H H+DHIG + ++ ++ P I P
Sbjct: 57 INIGAIPDDSIMENVDGKVRAIACTHGHLDHIGAI-----SKLAHKYHAPIIASPFTADL 111
Query: 94 IKEDV--EQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVI-------- 143
I +++ E++F V N+ L ++ GE F + D+ ++ + H I
Sbjct: 112 INQEIKSEKIFGV---------NNPLKTMNAGERFQVTPDIDLEFVRVQHSIVDCVFAAI 162
Query: 144 -QSQGYVVYSVKQKL-KQEYLGLPGDEIKKLKSSGTE--ITYTVTTPEVAFTGDTMSDFI 199
+G ++Y+ K+ + LG P D +L++ G E + T A +G T S+ I
Sbjct: 163 HTPKGIILYANDFKIDRSPTLGEPPD-FARLRALGKEGVLALITETTNAAISGKTPSEQI 221
Query: 200 VDEANIDVL----RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ +DVL +R VM +T+ S+ + + R I+E A K K +LL
Sbjct: 222 AKDLVMDVLIGTEESRSGVMVTTF---SSHIARIR--------AIIEAAHKMGRKPVLL 269
>gi|238916344|ref|YP_002929861.1| ribonuclease Z [Eubacterium eligens ATCC 27750]
gi|259494132|sp|C4Z309.1|RNZ_EUBE2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|238871704|gb|ACR71414.1| ribonuclease Z [Eubacterium eligens ATCC 27750]
Length = 304
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 35/254 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + +H H DHI GLP + T G R KP T++ P + V L R+ EL
Sbjct: 55 DVICFTHYHADHISGLPGLLLTIGNSDRKKPLTLVGPKGLGRVVSSL-----RVIAPELP 109
Query: 115 HTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGLP 165
L + L +E + AF+ H + GY + + V+ K + LG+P
Sbjct: 110 FELKFIELTNQQEHLSICGYEIDAFRVNHAVICYGYSISIPRIGKFDVE---KAKELGIP 166
Query: 166 GDEIKKLKSSGTEIT-----YTVTTPEVAFTGDTMSDFIVDEANIDVL-----RARILVM 215
KL+ GT +T YT A + D + ++ + + +
Sbjct: 167 CSMWNKLQ-HGTAVTIDDKEYTPDMVMGAARKGLKVTYCTDSRPVQIISDNAKESDLFIC 225
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS-----ARHKVDEIRRAV 270
E Y +D +A++Y H +E + A+ + + + L H+S + VD+ R+
Sbjct: 226 EGMYGEDGKEA-KAKEYKHMTFTEAAQLAKNADVREMWLTHYSPSLVRPQDYVDKARKIF 284
Query: 271 DAVPAPLAGRVFAL 284
A A GR L
Sbjct: 285 PATIAANDGRTVEL 298
>gi|422020560|ref|ZP_16367098.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
gi|414101197|gb|EKT62798.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
Length = 305
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P T+ P +K+ VE + V L
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVETVLSVSDSYMTYPLE-- 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLKQEYL------- 162
+V ++ G+ F +L V A++ H ++ GY + QKL+Q+ +
Sbjct: 117 IVEIEAGKLFD-DGELIVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQDEIPRGPWMQ 175
Query: 163 GLPGDEIKKLK-----SSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMES 217
L E+ +L+ + + V VA GDT EA + A ++V E+
Sbjct: 176 ALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTP---TPEALLLAKNANVMVHET 232
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
T + +A ++GH+ + + A++ K + H S R+ ++ R
Sbjct: 233 TL--EVALEVKANEHGHSSTRQAAQLAKQANVKRFIATHLSGRYGPADLPR 281
>gi|403380617|ref|ZP_10922674.1| ribonuclease Z [Paenibacillus sp. JC66]
Length = 314
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 32/240 (13%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVH 105
+ P + N LF++H H DH+ GLP ++ +RG P T+ P +K +E F +
Sbjct: 48 KSPLKMSKINKLFVTHLHGDHVYGLPGFLTSRGYQGGTSPFTLYGPKGVKTFIETAFSIS 107
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-------QKLK 158
H E ++V ++ G F V A + H I+S GY + ++L+
Sbjct: 108 DA--HVEYELSIVEIEPGTIFT-DGQYTVHAERLEHRIESFGYRIEEANKPGCLDAEQLR 164
Query: 159 QEYLGLPGDEIKKLKSSGTEITY----TVTTPE----------VAFTGDTMSDFIVDEAN 204
Q LG+P + G IT T+ + V GDT + A
Sbjct: 165 Q--LGVPNGPLYGRLKKGETITLEDGRTLRGSDFLGPGYYGRTVVILGDTR---YCEAAK 219
Query: 205 IDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+A ++V E+T+ + + + A Y H + A + ++L H S R++ D
Sbjct: 220 KLSNQADVVVHEATFAREKSDLATA--YYHATAEQAAITARDAGARHLILTHISQRYEDD 277
>gi|422771883|ref|ZP_16825572.1| ribonuclease BN [Escherichia coli E482]
gi|323941035|gb|EGB37222.1| ribonuclease BN [Escherichia coli E482]
Length = 305
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + TV +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAATVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|322385660|ref|ZP_08059304.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|417922821|ref|ZP_12566307.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|321270398|gb|EFX53314.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|342831969|gb|EGU66272.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
Length = 309
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPVGIKSFVMTSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D ++++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTITILGDTRKTDSSVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV E+TY + AR +GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHEATYGKGDE--KMARKHGHSTNMQAAEVAKEAGVKRLLLNHVSARFLSKDISQMRRD 290
Query: 270 VDAV 273
A+
Sbjct: 291 ASAI 294
>gi|320536508|ref|ZP_08036539.1| ribonuclease Z [Treponema phagedenis F0421]
gi|320146648|gb|EFW38233.1| ribonuclease Z [Treponema phagedenis F0421]
Length = 308
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 56 NFLFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FISH H DH+ GLP + + + + R P II P I E V E RR+ +N
Sbjct: 56 NVIFISHTHADHVTGLPGLLMLSSQVDRDDPLYIIGPPKIAEYV----ETSRRVLDMYIN 111
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVY-----SVKQKLKQEYLGLP-G 166
+ ++ ++ E + ++D V+AF H GY + + + L +P G
Sbjct: 112 YEIIIKEITEPGVVYEQEDFHVRAFWLDHTKPCLGYTLEEFPRPGIFNPEAAQQLNVPCG 171
Query: 167 DEIKKLKSSGTEITYT---VTTPEV---AFTGDTMSDFIVDEANI-----DVLRARILVM 215
KL+S T ++ V+ +V A G S F+ D + +V + V
Sbjct: 172 PLWSKLQSGETVLSADGKEVSPAQVMGAARKGRKFS-FVTDTKYLPSIAEEVKHSDFFVC 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E + + + A + H ++ + A+ E K + LIH+S R+ E+++
Sbjct: 231 EGMF--EKGMEKDAAEKKHMTCTQAAKIAKDAEVKKMALIHYSPRYTDYELKK 281
>gi|170680744|ref|YP_001744468.1| ribonuclease Z [Escherichia coli SMS-3-5]
gi|170518462|gb|ACB16640.1| ribonuclease Z [Escherichia coli SMS-3-5]
Length = 311
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVNVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|423661012|ref|ZP_17636181.1| ribonuclease Z [Bacillus cereus VDM022]
gi|401301053|gb|EJS06642.1| ribonuclease Z [Bacillus cereus VDM022]
Length = 307
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R T+ P IK Q EV + + + +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIK----QFIEVALLVSTTHVKYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDE 168
L +++ EE + +D V+ + H I+ GY + + L + LG+ PG
Sbjct: 115 LEIVEITEEGIVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPV 174
Query: 169 IKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMEST 218
K+LK +GT + + P+ + D E++ ++ + A +LV E+T
Sbjct: 175 FKRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDTRYCESSRELAQDADVLVHEAT 234
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ + +QA DY H+ + A + K ++L H S+R++ D
Sbjct: 235 FAAEDE--QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGD 278
>gi|386845908|ref|YP_006263921.1| ribonuclease Z [Actinoplanes sp. SE50/110]
gi|359833412|gb|AEV81853.1| ribonuclease Z [Actinoplanes sp. SE50/110]
Length = 311
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 21/223 (9%)
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPPTII-VPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
++H H DH GLP + L R+ P + P+ +E ++L D++E+ + V
Sbjct: 59 VTHFHGDHSLGLPGILQRISLDRVPHPVAVHYPAGGQEFYDRLRHATSYWDNAEIVASPV 118
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQSQGY-VVYSVKQKLKQEYL---GLPGDEIKKLKS 174
G E + + A H ++S GY + S +++ L G+ G + +L+
Sbjct: 119 GAGFAVETSAGR---LTALPLRHSVESYGYRLTESDSRRMVPALLAAHGVTGPAVGELQR 175
Query: 175 SGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR--AR---ILVMESTYVDDSTTVEQA 229
+G T+ V G +M+ F++D D + AR +LV+EST++ + + A
Sbjct: 176 AGRLGDVTLDQVSVVRPGQSMA-FVMDTGLCDSVYELARGVDLLVIESTFLAEDAAM--A 232
Query: 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHK-----VDEIR 267
GH + A + + ++L HFS R+ +DE R
Sbjct: 233 AQVGHLTAGQAGAVARECGVRHLVLTHFSQRYPDPSRFLDEAR 275
>gi|425305998|ref|ZP_18695707.1| ribonuclease Z [Escherichia coli N1]
gi|408228165|gb|EKI51707.1| ribonuclease Z [Escherichia coli N1]
Length = 305
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|432680885|ref|ZP_19916259.1| ribonuclease Z [Escherichia coli KTE143]
gi|431220282|gb|ELF17662.1| ribonuclease Z [Escherichia coli KTE143]
Length = 305
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVNVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|407463364|ref|YP_006774681.1| ribonuclease Z [Candidatus Nitrosopumilus koreensis AR1]
gi|407046986|gb|AFS81739.1| ribonuclease Z [Candidatus Nitrosopumilus koreensis AR1]
Length = 299
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH G+ + T + R + I PS I E+ + ++ + L+
Sbjct: 56 IFVTHLHGDHCVGILGLLQTMSMQNRTETLEIFGPSGI----EEFIAANIKILNFGLSFP 111
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKL------KQEYLGLPGDEI 169
++ + +E + F ++ K H I + Y+ + K K K + LG+P E+
Sbjct: 112 ILINTIKDEKIFENEKFTIRTCKANHSIVAFSYL-FEEKDKPGRFNVEKAKELGIPEGEL 170
Query: 170 KKLKSSGTEITYT--VTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVME 216
+G E+T + PE + +GDTM ++E LV +
Sbjct: 171 WNKLQNGNEVTINEKIIKPEQVLGEKRPGIKIGISGDTMPTKELEEF---FEECDYLVFD 227
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
ST++D+ ++A+D H+ + + + K ++L HFSAR+K
Sbjct: 228 STFLDEEK--QKAQDTCHSTAKQAATLGKNAKVKNLILTHFSARYK 271
>gi|417308736|ref|ZP_12095577.1| Ribonuclease Z [Escherichia coli PCN033]
gi|338769364|gb|EGP24143.1| Ribonuclease Z [Escherichia coli PCN033]
Length = 305
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T I V +A GDT +A +D+ + ++V
Sbjct: 175 FQALKAGKTIILEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|315222669|ref|ZP_07864558.1| ribonuclease Z [Streptococcus anginosus F0211]
gi|315188355|gb|EFU22081.1| ribonuclease Z [Streptococcus anginosus F0211]
Length = 309
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDIEIYGPVGIKSFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L GLP G
Sbjct: 119 FHEFDEKSLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAEKLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLEDGTKIIAADYISAPRPGKIITILGDTRKTNASVRLAVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAVDAV 273
STY + AR++GH+ + E A + K +LL H SAR + ++RR +V
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAEIAREAGVKRLLLNHISARFLSKDIGQMRRDASSV 294
>gi|297702621|ref|XP_002828271.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Pongo abelii]
Length = 363
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRAMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFVHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|420161080|ref|ZP_14667851.1| ribonuclease Z [Weissella koreensis KCTC 3621]
gi|394745830|gb|EJF34648.1| ribonuclease Z [Weissella koreensis KCTC 3621]
Length = 328
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 40/231 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATR----GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
+F++H H DHI GLP +++R G R+ + P IK+ VE + + +
Sbjct: 59 IFVTHLHGDHIFGLPGLLSSRSFQGGDDRLD---LYGPHGIKQYVETSLRLSQTHLTYRI 115
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPG 166
N+ + D G F K V A H I S GY + +LK+ L +P
Sbjct: 116 NYHEISDDGGVVFENEK-FRVLALPLDHRILSFGYRIVEADHEGELLVDRLKE--LEVPA 172
Query: 167 DEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RA 210
+ G +IT + V P+ V GDT NIDVL +A
Sbjct: 173 GPLYGKLKHGEDITLSDGRIIYAKDVVGKPKIGRIVTILGDTRR-----TPNIDVLMDQA 227
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
++V ESTY D + AR Y H+ + + A +LL H SAR+
Sbjct: 228 SVVVHESTYGKDEAKL--ARSYHHSTNLQAAQAATNQHVGRLLLTHISARY 276
>gi|271498588|ref|YP_003331613.1| ribonuclease Z [Dickeya dadantii Ech586]
gi|270342143|gb|ACZ74908.1| ribonuclease Z [Dickeya dadantii Ech586]
Length = 304
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 70/263 (26%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVE------ 99
R P + +FI+H H DH+ GLP + +R + ++ P T+ P+ +K VE
Sbjct: 48 RTPIKPGKLEKIFITHLHGDHLFGLPGLLCSRSMAGVETPLTLYGPTGLKTFVETALTLS 107
Query: 100 ----------------QLFEVHR-RMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTY 140
+FE H+ R+ EL+HTL VG + EE L V+
Sbjct: 108 GSWLTYPLEVVEIVPGTVFEDHQFRVTAHELSHTLYCVGYRI-EELPKPGALDVEK---- 162
Query: 141 HVIQSQGYVVYSVKQKLKQ---------------EYLGLPGDEIKKLKSSGTEITYTVTT 185
+ +QG + Q+LK+ +YLG PG K L G T T
Sbjct: 163 --LAAQGVKPGAYFQQLKRGETVTLDDGRVLNGWDYLG-PGLPGKSLAIFGD----TRPT 215
Query: 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245
PE + A +DV +V E+T + E+A + GH+ + A
Sbjct: 216 PEA----------LKLAAGVDV-----MVHEATV--EGAMAERANERGHSTTLQTAATAR 258
Query: 246 KFENKAILLIHFSARHKVDEIRR 268
K +++ HFSAR+ +++ R
Sbjct: 259 DAGAKRLIITHFSARYGREDLER 281
>gi|334124926|ref|ZP_08498920.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
gi|333387496|gb|EGK58690.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
Length = 305
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH+ GLP + +R + P TI P I+E VE R+ S ++
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPVGIQEFVETTL----RLSGSWTDYP 115
Query: 117 LVGLDVGEEFCMRK-DLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIK----- 170
L +++GE D V+A+ H ++ GY V + L D +K
Sbjct: 116 LEVVEIGEGLVFDDGDYQVRAYPLNHPVECYGYRVQEHDKPGALNAAALQADGVKPGPLF 175
Query: 171 -KLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+LK G +T + P+ +A GDT A ++V
Sbjct: 176 HRLK-QGETVTLEDGRVINGQEYLAPPQPGKKLAIFGDTAP---CPSARRLAEGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
E+T ++ E+A GH+ + + A + +++ H S+R+ V
Sbjct: 232 EATL--EAAMEEKANSRGHSSTCQAAQLAREAGVGKLIVTHVSSRYDV 277
>gi|307721807|ref|YP_003892947.1| RNAse Z [Sulfurimonas autotrophica DSM 16294]
gi|306979900|gb|ADN09935.1| RNAse Z [Sulfurimonas autotrophica DSM 16294]
Length = 316
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 23/244 (9%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP ++++ L + P TI P IK +E + + + +H
Sbjct: 58 IFITHLHGDHYYGLPGLLSSKTLDKAFSPLTIYGPKGIKRFIECVIDTSK--EHLGYKLE 115
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGLPGDEIKKLKS 174
++ ++ E K ++ H ++S Y + + + KL ++ L L G E L
Sbjct: 116 IIEIEANTELSFDK-FSLQVLPLVHSVESFAYFIKEHDITNKLDEKKLRLEGLEPSPLYG 174
Query: 175 S---GTEITYT---VTTPEVAFTGDTMSDFIV--DEANIDVL-----RARILVMESTYVD 221
G IT+ + + E I+ D + D+L +LV ESTY
Sbjct: 175 ELKRGNNITHKGKELVSSEYMLCPIPGRTLIIAGDNSEPDILGEHLDNLDLLVHESTYTQ 234
Query: 222 DSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD---EIRRAVDAVPAPLA 278
+ + + HT + A+K K ++ H SAR+ + + D + +
Sbjct: 235 EVYDALPTK-FLHTTAKNLGIAAQKHHVKNLIATHISARYSQGSSYDTQMVCDEIKSSYK 293
Query: 279 GRVF 282
GR F
Sbjct: 294 GRCF 297
>gi|194433318|ref|ZP_03065598.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|416286493|ref|ZP_11648392.1| Ribonuclease Z [Shigella boydii ATCC 9905]
gi|194418412|gb|EDX34501.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|320178758|gb|EFW53721.1| Ribonuclease Z [Shigella boydii ATCC 9905]
Length = 311
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE R+ S ++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETAL----RISGSWTDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDT-MSDFIVDEA-NIDVLRARILV 214
++LK+ T + V +A GDT SD +D A +DV +V
Sbjct: 182 QELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGPSDAALDLAKGVDV-----MV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|152971203|ref|YP_001336312.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|166991105|sp|A6TBW1.1|RBN_KLEP7 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|150956052|gb|ABR78082.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 306
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK + G I + +TP +A GDT +A A ++V
Sbjct: 174 LFHQLKRGQRVELADGRVIDGSRYLGPSTPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|432793487|ref|ZP_20027571.1| ribonuclease Z [Escherichia coli KTE78]
gi|432799445|ref|ZP_20033467.1| ribonuclease Z [Escherichia coli KTE79]
gi|431339150|gb|ELG26212.1| ribonuclease Z [Escherichia coli KTE78]
gi|431343311|gb|ELG30275.1| ribonuclease Z [Escherichia coli KTE79]
Length = 311
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGTEI-------------TYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T I V +A GDT +A +D+ + ++V
Sbjct: 181 FQALKAGKTIILEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|256847026|ref|ZP_05552472.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
gi|256715690|gb|EEU30665.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
Length = 313
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R P TI P IKE V+ R+ S L++
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVQTTL----RVSESRLSYP 114
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLPGDEI 169
+ +++ ++ + D V A K H I GY V Q K + LG+P +
Sbjct: 115 IKFVEITDDGQLFSDQTFTVYAKKLDHKIDCFGYRVVEHDHPGELQVDKLKKLGIPSGPL 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
G E+ + +P+ VA GDT A A +LV
Sbjct: 175 YGQLKQGKEVQLNDGTILNGQDFIGSPQRGRIVAILGDTRK---TKNAIALAKDADVLVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
EST+ + + A +Y H+ ++ + A++ K +LL H SAR+
Sbjct: 232 ESTFGKGESKL--AHNYYHSTSAQAAQIAKQAHVKMLLLNHISARY 275
>gi|374709017|ref|ZP_09713451.1| ribonuclease Z [Sporolactobacillus inulinus CASD]
Length = 311
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 114/288 (39%), Gaps = 49/288 (17%)
Query: 11 SGRGMQLQGYKVEGLSIAGHETCIIFPSLD---LAFDIGRCPSRAL--------SQNFLF 59
+G GM + V ++++ FP D FD G R + +F
Sbjct: 8 TGAGMPAKERNVTSMALS-------FPEYDGDLWLFDCGEGTQRQILYTAVKLTKLTAVF 60
Query: 60 ISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHTLV 118
++H H DH+ GLP + +R + P +I P +K VE ++ + L++ LV
Sbjct: 61 VTHLHGDHLFGLPGILGSRSFQGAEHPLELIGPKGLKAFVETSLQI----SGTHLHYPLV 116
Query: 119 --GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK---LKQEYLGL---PGDEIK 170
+D + + V A + H IQS GY + Q L + L PG K
Sbjct: 117 IHEIDSNGKVYENEHFIVHACELDHGIQSFGYRITEKDQPGELLVDRLIDLGIRPGPIYK 176
Query: 171 KLKSSGTEITYTVTTPEVA-------------FTGDTMSDFIVDEANIDVLRARILVMES 217
K+K I T E A GDT A A +LV E+
Sbjct: 177 KIKEQSQVILPDGRTLETAPFIGKKKKGRHVVVLGDTRP---CHAALKLAAHADLLVHEA 233
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
T+ S + A DY H+ + E A+K E K ++L H S+R++ E
Sbjct: 234 TFNGQSARL--AHDYHHSTSIQAAEMAQKAEVKQLILSHLSSRYQKKE 279
>gi|432602825|ref|ZP_19839069.1| ribonuclease Z [Escherichia coli KTE66]
gi|432719392|ref|ZP_19954361.1| ribonuclease Z [Escherichia coli KTE9]
gi|431141399|gb|ELE43164.1| ribonuclease Z [Escherichia coli KTE66]
gi|431263204|gb|ELF55193.1| ribonuclease Z [Escherichia coli KTE9]
Length = 305
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|333910416|ref|YP_004484149.1| ribonuclease Z [Methanotorris igneus Kol 5]
gi|333751005|gb|AEF96084.1| Ribonuclease Z [Methanotorris igneus Kol 5]
Length = 317
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 36/254 (14%)
Query: 41 LAFDIGRCPSR--------ALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVP 91
L FD G R + +FISH H DHI G+P + + R + I P
Sbjct: 31 LLFDCGENAQRQMMYTEVSPMKIKNIFISHLHGDHILGIPGLLQSMAFAGRKEEINIYGP 90
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
KE + V + ++N + + + V AF H + S YV
Sbjct: 91 VGTKEMMIHALSVGYHGINFKVNVYEINSKEAVKIIDNEKFEVYAFPVKHSVPSYAYVFK 150
Query: 152 SVKQKL----KQEYLGLP-GDEIKKLKSSGTEITYT---VTTPE-----------VAFTG 192
K+ K + LG+ G ++KKLK G + V PE V ++G
Sbjct: 151 EKKKPRLDINKAKALGVKVGPDLKKLKD-GIPVKLEDGRVIKPEEVLLPPKKGICVGYSG 209
Query: 193 DTMSDFIVDEAN--IDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT+ ++E + L +L+ E+TY D+T E A + H+ + + ++ AE + +
Sbjct: 210 DTVP---IEEFGKFLKELGCGVLIHEATY--DNTLKENAIETMHSTVEDAIKIAEIAKVE 264
Query: 251 AILLIHFSARHKVD 264
++L H SAR+ D
Sbjct: 265 TLILTHISARYDDD 278
>gi|339635085|ref|YP_004726726.1| ribonuclease Z [Weissella koreensis KACC 15510]
gi|338854881|gb|AEJ24047.1| ribonuclease Z [Weissella koreensis KACC 15510]
Length = 328
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 40/231 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATR----GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL 113
+F++H H DHI GLP +++R G R+ + P IK+ VE + + +
Sbjct: 59 IFVTHLHGDHIFGLPGLLSSRSFQGGDDRLD---LYGPHGIKQYVETSLRLSQTHLTYRI 115
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ-------KLKQEYLGLPG 166
N+ + D G F K V A H I S GY + +LK+ L +P
Sbjct: 116 NYHEISDDGGVVFENEK-FRVFALPLDHRILSFGYRIVEADHEGELLVDRLKE--LEVPA 172
Query: 167 DEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVL--RA 210
+ G +IT + V P+ V GDT NIDVL +A
Sbjct: 173 GPLYGKLKHGEDITLSDGRIIYAKDVVGKPKIGRIVTILGDTRR-----TPNIDVLMDQA 227
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
++V ESTY D + AR Y H+ + + A +LL H SAR+
Sbjct: 228 SVVVHESTYGKDEAKL--ARSYHHSTNLQAAQAATNQHVGRLLLTHISARY 276
>gi|339450329|ref|ZP_08653699.1| beta-lactamase superfamily hydrolase [Leuconostoc lactis KCTC 3528]
Length = 212
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 58 LFISHAHMDHIGGLPMYVATR---GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DHI GLP ++++R G + +P TI P IK+ V+ R+ + L+
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSFQGADKHEPLTIYGPKGIKDFVQTAL----RVSETRLS 114
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV 150
+ LV +++ E F V A K H I + G+ V
Sbjct: 115 YPLVYVELTEGVIFDDRTFRVIAAKMRHRIDTWGFRV 151
>gi|294669231|ref|ZP_06734311.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291308863|gb|EFE50106.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 307
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 38/236 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM--KPPTIIVPSCIKEDVEQLFEVHRRMDHSELN- 114
+FI+H H DHI GLP +++R +P + P+ I+ VE EV + +N
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFLGGADEPLCLYGPAGIRRFVESALEVSQTQLSYPINF 118
Query: 115 HTLVG----LDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVK-----QKLKQEYLGLP 165
H V LD GE V+AF H + S Y + + Q + LG+P
Sbjct: 119 HEFVSDGLILDDGE-------FTVRAFGLAHSLPSFAYRIEEKERAGGLQMERLRELGIP 171
Query: 166 GDEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRAR 211
+ +G +T ++ P +A GDT A A
Sbjct: 172 SGPLLGRLKNGETVTLDDGRLIDGKEYLSPPRKGRIIAVFGDTKP---CPSAPAAAEGAD 228
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
+LV E+T+ + A H+ +S+ A + K + L H SAR+ +E R
Sbjct: 229 VLVHEATFAAGDEAM--AEKVFHSTVSDAANLAAEAGVKQLYLTHISARYADEEQR 282
>gi|225010713|ref|ZP_03701182.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
gi|225005084|gb|EEG43037.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
Length = 301
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 34/230 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVAT-RGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FISH H DH GLP VAT R L R+ P I P IKE V L ++ + L+
Sbjct: 54 NHIFISHLHGDHFFGLPGLVATFRLLGRVNPLHIYGPKGIKEAVTLLLKLGDSWTNYPLH 113
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKS 174
+ E K + V H + + G+ L +E +G E + +++
Sbjct: 114 FHELSSQAPEVVFEDKKVTVTTIPLDHRVYTNGF--------LFREKVGSRKLEAQAVEA 165
Query: 175 SGTEITYTVT--------------TPEVAFTGDTMSD----FIVDEANIDVLRARI---- 212
G + Y P + D F D A + A+I
Sbjct: 166 HGIDSCYFQNIKDGKDAPNKAGEIIPNAQLSSDPKPTKSYAFCSDTAYFPKIIAQIKEVT 225
Query: 213 -LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
L EST+++ + + A H+ S+ + AE K+++L H+S R+
Sbjct: 226 VLYHESTFLESESDL--ATKTKHSTASQAAKIAESAGVKSLILGHYSTRY 273
>gi|432543882|ref|ZP_19780725.1| ribonuclease Z [Escherichia coli KTE236]
gi|432549372|ref|ZP_19786140.1| ribonuclease Z [Escherichia coli KTE237]
gi|432622522|ref|ZP_19858553.1| ribonuclease Z [Escherichia coli KTE76]
gi|432816025|ref|ZP_20049809.1| ribonuclease Z [Escherichia coli KTE115]
gi|431074292|gb|ELD81856.1| ribonuclease Z [Escherichia coli KTE236]
gi|431079650|gb|ELD86604.1| ribonuclease Z [Escherichia coli KTE237]
gi|431159322|gb|ELE59879.1| ribonuclease Z [Escherichia coli KTE76]
gi|431364249|gb|ELG50793.1| ribonuclease Z [Escherichia coli KTE115]
Length = 305
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETTLRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|339448222|ref|ZP_08651778.1| ribonuclease Z [Lactobacillus fructivorans KCTC 3543]
Length = 315
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 37/231 (16%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHR-----RMD 109
N +FI+H H DHI GLP +++R P TI P IK V+ +V + R+
Sbjct: 57 NKIFITHLHGDHIYGLPGLLSSRSFQGGDDPVTIYGPHGIKNYVQTSLQVTQTKLGYRIK 116
Query: 110 HSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYL 162
+ EL G+ F RK V A K H +QS G+ + + KL++ +
Sbjct: 117 YVELGQP------GKIFEGRK-FTVYAEKLDHQVQSWGFRIVEHDHPGELLVNKLRENNI 169
Query: 163 --GLPGDEIKKLKS---------SGTE-ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA 210
G ++K+ K+ +G + I + GDT VD N A
Sbjct: 170 PAGPLYGQLKQGKTIQLNDGRIINGNDYIGKAQKGRIITILGDTRK---VDTINELAQDA 226
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+LV EST+ + A +Y H+ + A++ K +LL H SAR+
Sbjct: 227 DVLVHESTFGKGEAKL--AHNYYHSTNIQAANTAKEANVKRLLLTHISARY 275
>gi|417672982|ref|ZP_12322440.1| ribonuclease Z [Shigella dysenteriae 155-74]
gi|417690398|ref|ZP_12339620.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332088400|gb|EGI93518.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332090756|gb|EGI95849.1| ribonuclease Z [Shigella dysenteriae 155-74]
Length = 305
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDT-MSDFIVDEA-NIDVLRARILV 214
++LK+ T + V +A GDT SD +D A +DV +V
Sbjct: 176 QELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGPSDAALDLAKGVDV-----MV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|373956712|ref|ZP_09616672.1| Ribonuclease Z [Mucilaginibacter paludis DSM 18603]
gi|373893312|gb|EHQ29209.1| Ribonuclease Z [Mucilaginibacter paludis DSM 18603]
Length = 305
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 31/254 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+++FISH H DH GL +++ L R KP T+ P+ +K+ ++ FE +L
Sbjct: 56 DYIFISHLHGDHYLGLVGLLSSLNLNGRKKPITLFGPAHLKDIIQMHFEYSETTIQFDLE 115
Query: 115 HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
E +D+ V+ H I G+ ++ K++L++ E L +P +
Sbjct: 116 FRATDPSKSEIILDNQDITVETILLDHRIACTGF-LFRQKRRLRKIIKERVEELQVPVEY 174
Query: 169 IKKLKSS------------GTEITYTVTTPEV-AFTGDTMSDFIVDEANIDVLRARILVM 215
LK E+T P A+ DT+ + E + +L
Sbjct: 175 YAVLKRGVDYFATNGQVYPNNELTTAAEEPRAYAYCSDTLYNESYFE---QIAGVNLLYH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK-----VDEIRRAV 270
E+T+ D +++A + HT + E A+ K +L+ HFSAR+K +DE R
Sbjct: 232 EATFAHD--MLDRANETHHTTALQAGEIAKITGAKKLLIGHFSARYKTLTDLLDEARSVF 289
Query: 271 DAVPAPLAGRVFAL 284
+ G+ F +
Sbjct: 290 PETELAIEGKTFVI 303
>gi|14521306|ref|NP_126781.1| ribonuclease Z [Pyrococcus abyssi GE5]
gi|41017586|sp|Q9UZP4.1|RNZ_PYRAB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|5458524|emb|CAB50012.1| Putative sulfatase, ATSA/ELAC family [Pyrococcus abyssi GE5]
gi|380741880|tpe|CCE70514.1| TPA: ribonuclease Z [Pyrococcus abyssi GE5]
Length = 307
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 40/250 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELN-H 115
+FI+H H DH GLP + T L++ K P I P E ++ L ++ H
Sbjct: 57 IFITHFHGDHYLGLPALIQTMNLWKRKEPLHIYGPENSIEFIKNLLNSGYFAPSFDVTVH 116
Query: 116 TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGL-PGDEI 169
L G+ + V AF+ H + + GYV ++ K + LGL PG +
Sbjct: 117 EL----PGKARLQFEKYEVWAFEVSHGVPALGYVFKEKDRRGSFDLEKIKNLGLEPGPWM 172
Query: 170 KKLKS------SGTEITYT-VTTP-----EVAFTGDTMSDFIVDEANIDVL----RARIL 213
K+L+ G I + VT P ++ +TGDT E +V+ RA +L
Sbjct: 173 KELEEKKVINIGGRTIRLSEVTGPKKRGAKIVYTGDT-------EPCENVIQFSRRANLL 225
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR-AVDA 272
+ E+TY++ ++ Y HT + E E +K + + L H R+ E + A
Sbjct: 226 IHEATYLNSE---DRGESY-HTTVEEACEIWKKSKAFNLALFHRGPRYSFKEYKEGATKL 281
Query: 273 VPAPLAGRVF 282
P + R F
Sbjct: 282 CPQAMIPRDF 291
>gi|421238323|ref|ZP_15694892.1| ribonuclease Z [Streptococcus pneumoniae 2071247]
gi|421244516|ref|ZP_15701019.1| ribonuclease Z [Streptococcus pneumoniae 2081685]
gi|395602910|gb|EJG63051.1| ribonuclease Z [Streptococcus pneumoniae 2071247]
gi|395610174|gb|EJG70253.1| ribonuclease Z [Streptococcus pneumoniae 2081685]
Length = 309
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP 165
H +G+ + D F V A + H I GY V +KLK G+P
Sbjct: 119 FHEFDQDSLGK--ILETDKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAKKLKAA--GVP 174
Query: 166 -GDEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDVLRAR 211
G K+K+ GTEI ++ P + GDT D + + A
Sbjct: 175 FGPLFGKIKNGQDLVLEDGTEIKAADYISAPRPGKIITILGDTRK---TDASVRLAVNAD 231
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
+LV ESTY D + AR++GH+ + + A + K +LL H SAR
Sbjct: 232 VLVHESTYGKDDEKI--ARNHGHSTNMQAAQVAVEAGAKRLLLNHISAR 278
>gi|331673779|ref|ZP_08374542.1| ribonuclease Z [Escherichia coli TA280]
gi|331069052|gb|EGI40444.1| ribonuclease Z [Escherichia coli TA280]
Length = 311
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTSP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|402903136|ref|XP_003914435.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Papio anubis]
Length = 363
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFILRTMELSHTELVFR 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|419923065|ref|ZP_14441037.1| ribonuclease Z [Escherichia coli 541-15]
gi|388394639|gb|EIL55901.1| ribonuclease Z [Escherichia coli 541-15]
Length = 311
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|293410631|ref|ZP_06654207.1| ribonuclease Z [Escherichia coli B354]
gi|291471099|gb|EFF13583.1| ribonuclease Z [Escherichia coli B354]
Length = 311
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|124026481|ref|YP_001015596.1| metallo-beta-lactamase superfamily protein [Prochlorococcus marinus
str. NATL1A]
gi|166991495|sp|A2C4C2.1|RNZ_PROM1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123961549|gb|ABM76332.1| Metallo-beta-lactamase superfamily enzyme [Prochlorococcus marinus
str. NATL1A]
Length = 314
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 89/233 (38%), Gaps = 41/233 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRG---------LYRMKPPTIIVPSCIKEDVEQLFEVHRRM 108
+FI+H H DHI GLP +A+ G LY P + SC L+ R+
Sbjct: 58 IFITHMHGDHIYGLPGLLASIGLAGSSSGIELYGPAPLKNFIDSC-------LYNSSSRL 110
Query: 109 DHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVVYSVKQKL--------KQ 159
+S H + +E +L VK H I S Y V QK K
Sbjct: 111 AYSLKFHRVENAANNKEILFEDSELEVKTAPLKHRIPS---FAYRVNQKTRPGRFDIEKA 167
Query: 160 EYLGLPGDEIKKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLR 209
+ G+P + G E+ P + +D + E+ I++ R
Sbjct: 168 KLKGIPPGPVYADLQRGEEVRLEDGRIFSGKEFCGPPRPGVSMVYCTDTVYTESAIEISR 227
Query: 210 -ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A +L+ ESTY T E A + GH+ + + A K ++L H S R+
Sbjct: 228 KADLLIHESTYSYKET--EMAYERGHSTATMAAQIAAKANVDQLILTHLSPRY 278
>gi|383320698|ref|YP_005381539.1| metallo-beta-lactamase superfamily hydrolase [Methanocella conradii
HZ254]
gi|379322068|gb|AFD01021.1| putative hydrolase of the metallo-beta-lactamase superfamily
[Methanocella conradii HZ254]
Length = 445
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 36/235 (15%)
Query: 38 SLDLAFDIGRCPSRALSQNF------LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVP 91
SLDL +G P + N + +H H+DHIG +P +R K P I P
Sbjct: 53 SLDL-IKMGAIPDDKVLNNVDANVVGIVCTHGHLDHIGAVPKLA-----HRYKCPIISTP 106
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVI-------- 143
E + Q E R+ E+ + L+ LD G+ + ++L V+ + H I
Sbjct: 107 FT-TELIRQEIESERKF---EVANKLIPLDCGKIHDLSRNLSVELIRVQHSIVDCAFAAL 162
Query: 144 -QSQGYVVYSVKQKL-KQEYLGLPGDEIKKLKSSGTE--ITYTVTTPEVAFTGDTMSDFI 199
G ++Y+ K+ + LG D K+LK G E + + V +G T S+ I
Sbjct: 163 HTPHGIILYACDFKIDRTPTLGDVPD-FKRLKQLGKEGVLAMITESTNVDRSGKTPSEQI 221
Query: 200 VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILL 254
+ D L L E T +S + L I+E AEK + +LL
Sbjct: 222 ARDMVWDAL----LGTEET---ESGVLVTTFSSHIARLKSIIEAAEKMDRTPVLL 269
>gi|355701952|gb|EHH29305.1| Zinc phosphodiesterase ELAC protein 1 [Macaca mulatta]
gi|355755034|gb|EHH58901.1| Zinc phosphodiesterase ELAC protein 1 [Macaca fascicularis]
gi|380788167|gb|AFE65959.1| zinc phosphodiesterase ELAC protein 1 [Macaca mulatta]
Length = 363
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFR 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|289435320|ref|YP_003465192.1| metallo-beta-lactamase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171564|emb|CBH28110.1| metallo-beta-lactamase family protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 306
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 38/229 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R TI P I+ V E ++ + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPVGIQAYV----ETSLKLSGTRLTYK 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ------KLKQEYLGLPGDE 168
++ ++ ++F V A + H + S GY +V KQ +LK++ + PG
Sbjct: 115 IIFEEIEPGLIFEDEMFTVTADELDHGMLSYGYRIVEKDKQGALDAARLKEDGVE-PGPI 173
Query: 169 IKKLKSS-------GTEI--TYTVTTPE----VAFTGD---TMSDFIVDEANIDVLRARI 212
++LK+ G EI + P+ ++ GD T S+F + E A I
Sbjct: 174 FQRLKNGEVVTLPDGREIDGENYIGAPQKGKIISIFGDTRETASEFALAE------NADI 227
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
L+ E+T+ D + A +Y H+ + E A+K K ++L H S+R+
Sbjct: 228 LIHEATFEGDKGKM--AAEYMHSTTIQAAELAKKAGVKKLILTHISSRY 274
>gi|295426307|ref|ZP_06818967.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
gi|295064046|gb|EFG54994.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
Length = 311
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 37/255 (14%)
Query: 43 FDIGRCPS-RALSQNF-------LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSC 93
FDIG + L N +FISH H DHI GLP +ATR + P TI P
Sbjct: 36 FDIGEATQHQILKTNIRLRKVTKIFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPPG 95
Query: 94 IKEDVEQLFEVHRRMDHSELNHTL--VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151
+ EQ + R+ +++++ + V L G KD V K H + S GY +
Sbjct: 96 L----EQFVKTSLRVSRTKVSYPIKFVELTEGGLIYQGKDFRVYTEKLDHRVPSFGYRIV 151
Query: 152 S-------VKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTT--PEVAFTGDTMSDFIV-- 200
+ KL + + +P + +G +I T F G IV
Sbjct: 152 ENSRPGELLMNKLAKYH--IPNGPLYGKLKAGEQIALADGTILNGKDFLGPARPGRIVTI 209
Query: 201 -----DEANIDVL--RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
NI L A +LV EST+ + + A Y H+ E + A K +
Sbjct: 210 IYDTRSTPNIAKLAQNADVLVHESTFAGNEAKL--AHSYYHSTSVEAAQVARDNGVKKLC 267
Query: 254 LIHFSARHKVDEIRR 268
L H SAR+ ++ +R
Sbjct: 268 LDHISARYLGNKAKR 282
>gi|306490831|gb|ADM94951.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DHI GLP +ATRGL +K I P ++ ++ F+ H +
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLENYLKNNFDY--SCTHIPYFYH 116
Query: 117 LVGLDVGEEFCMRKDLFVK--AFKTY-----HVIQSQGYVVY--SVKQKLKQE---YLGL 164
+ ++ +E + +L K Y H + S GY + ++K+ + E LG+
Sbjct: 117 IYAIE--KENYLSSNLLWKNENISVYCALLNHYLDSFGYAIIEKNIKRNILVEKLVKLGV 174
Query: 165 -PGDEIKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA 210
PG KK K +G I +++ ++ + GDT + A I A
Sbjct: 175 PPGPIYKKFKENGIINLNDGMVLKADDFIKESISIKKLCYCGDTT---FSNNAVILAQEA 231
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
+L+ E T+ S ++A+ H+ + E ++ A K + + H S R+
Sbjct: 232 DLLIHEGTFC--SKRKQEAKQSYHSTIEEAIKVARLARVKKLAITHLSPRY 280
>gi|203288182|ref|YP_002223197.1| ribonuclease Z [Borrelia recurrentis A1]
gi|254808617|sp|B5RQ92.1|RNZ_BORRA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|201085402|gb|ACH94976.1| ribonuclease Z [Borrelia recurrentis A1]
Length = 319
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 41 LAFDIGRCPSRALSQN--------FLFISHAHMDHIGGL---PMYVATRGLYRMKPPTII 89
+ FD G +L + + I+H H DHI GL M +A G R +P TII
Sbjct: 33 ILFDCGEATQMSLRKQKISWQKIKMICITHLHADHITGLLGIVMLMAQSGDTRKEPLTII 92
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGY 148
P IK+ +E E+ R + ++ + + ++ E K ++ K H I GY
Sbjct: 93 GPIGIKKYLETNIELLRVHKNYQIIYKEIIINKTEPVLYEDKRKRIEYIKLKHSIDCIGY 152
Query: 149 VVYSVKQ-----KLKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEV----------AF 190
+ + K E L +P I+K G E+ + E+ A+
Sbjct: 153 LFIEKDKPGKFDTQKAESLNIPKGPIRKKLQEGYEVILNGRKIVPSEILGEIKKGLKFAY 212
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT +E + + ++++EST+ DD E+A+ H + +K +
Sbjct: 213 ITDTAY---FEELSTYIQNFNLVIIESTFKDDLK--EEAKKKLHLTAKLAAQITKKAKVY 267
Query: 251 AILLIHFSARHKVDE 265
LIHFS R+ +++
Sbjct: 268 QTGLIHFSERYTLNK 282
>gi|422010256|ref|ZP_16357237.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
gi|414091559|gb|EKT53242.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
Length = 304
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P I+ P +K+ +E + V + +
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGATDPLIVYGPKGLKQYIETVLTV--SVSYMTYPLE 116
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK----- 171
+V ++ G+ F +L V A+ H ++ GY + ++ + + L D I +
Sbjct: 117 IVEIEAGQLF-DDGELIVTAYALDHRVECYGYRIEEHPKRGALDAVKLANDNIPRGPWMQ 175
Query: 172 -LKSSGTEIT---YTVTTPE----------VAFTGDTMSDFIVDEANIDVLR-ARILVME 216
LK+ T + TV + +A GDT E +++ R A +++ E
Sbjct: 176 ALKAGETIVLDDGRTVNGADYLGEPIPGKIIAIFGDTQP----TEQALELARNADVMIHE 231
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+T + ++A + GH+ + E A K + H S R+ ++I +
Sbjct: 232 TTLA--AEFAQKANERGHSTTVQAAELARAAGVKRFIATHLSGRYTSEDIPK 281
>gi|399545979|ref|YP_006559287.1| ribonuclease Z [Marinobacter sp. BSs20148]
gi|399161311|gb|AFP31874.1| Ribonuclease Z [Marinobacter sp. BSs20148]
Length = 322
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 58 LFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DH GLP + + L R + I+ P + + E S L +T
Sbjct: 58 IFITHIHGDHTFGLPGLLTSASMLGRTESLDIVAPVQTQRFINATLE----NSDSSLGYT 113
Query: 117 LVGLDV-GEEFCMR-KDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLG----LPGDE 168
L +D +FC + +D V H + + YV +++++L Q+ L PG
Sbjct: 114 LNFIDSEAPDFCWKDQDFGVTNVALSHRVPCRAYVFTERNIERQLLQDKLNEDGVEPGPS 173
Query: 169 IKKLKSSGTEIT-----------YTVTTPEVA----FTGDTMSDFIVDEANIDVLRARIL 213
+L+ G ++T YT TP VA GD ++ A + +L
Sbjct: 174 WGELQ-KGNDVTQEDGRLLRSDDYT-QTPRVARRLIVAGDNDDPTLLTGA---CEGSHVL 228
Query: 214 VMESTYVDDSTTVEQARDY-GHTHLSEIVEYAEKFENKAILLIHFSARHK 262
+ E+TY D ++ + H+ ++ +A++ + ++L HFS+R++
Sbjct: 229 IHEATYTQD--VADRVGPWPQHSSAEQVARFAQQAQLPNLVLTHFSSRYQ 276
>gi|419932923|ref|ZP_14450198.1| ribonuclease Z [Escherichia coli 576-1]
gi|388414897|gb|EIL74840.1| ribonuclease Z [Escherichia coli 576-1]
Length = 311
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S +++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWIDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTAP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|297275312|ref|XP_001099883.2| PREDICTED: NAD-dependent malic enzyme, mitochondrial [Macaca
mulatta]
Length = 915
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 107/268 (39%), Gaps = 69/268 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 610 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFR 669
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 670 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 728
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 729 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 786
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 787 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 843
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHK 262
+ +A+ K ++L HFS R+K
Sbjct: 844 STPQMAATFAKLCRAKRLVLTHFSQRYK 871
>gi|418964098|ref|ZP_13515920.1| ribonuclease Z [Streptococcus anginosus subsp. whileyi CCUG 39159]
gi|383341867|gb|EID20112.1| ribonuclease Z [Streptococcus anginosus subsp. whileyi CCUG 39159]
Length = 309
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPIGIKNFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY V ++ L E L GLP G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRVMQKDLEGTLDAEKLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGKDVVLEDGTKIIAADYISAPRPGKIITILGDTRKTHASVRLAVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR++GH+ + E A + K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAEVAREAGVKRLLLNHISAR 278
>gi|312864787|ref|ZP_07725018.1| ribonuclease Z [Streptococcus downei F0415]
gi|311099914|gb|EFQ58127.1| ribonuclease Z [Streptococcus downei F0415]
Length = 309
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 33/236 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DH+ GLP ++A+R + T + P I+ V ++ R+ +
Sbjct: 59 IFITHLHGDHVLGLPGFLASRSFQASEEQTDLDLYGPVGIRSMVLTTLKLSGTRLPYRIY 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY V ++ L E L GLP G
Sbjct: 119 FHEFDAHSLGK--ILETDKFTVYAEKLDHTIFCVGYRVVQKDLEGTLDAEKLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDV-LRARI 212
K+K+ GT+I V+ P +A GDT A++ + L A I
Sbjct: 177 PLFGKVKNGQDVVLEDGTKIIAKDYVSAPRKGKVLAILGDTRK----CHASVRLALGADI 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
LV ESTY + AR++GH+ + + A+ K +L+ H SAR ++R+
Sbjct: 233 LVHESTYGRGDERL--ARNHGHSTNMQAAQVAKDASAKRLLMNHISARFLARDVRQ 286
>gi|426385982|ref|XP_004059475.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426385984|ref|XP_004059476.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 363
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVMEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|8922122|ref|NP_061166.1| zinc phosphodiesterase ELAC protein 1 [Homo sapiens]
gi|41017799|sp|Q9H777.2|RNZ1_HUMAN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=Deleted in Ma29; AltName: Full=ElaC homolog protein
1; AltName: Full=Ribonuclease Z 1; Short=RNase Z 1;
AltName: Full=tRNA 3 endonuclease 1; AltName:
Full=tRNase Z 1
gi|10946491|gb|AAG24917.1|AF308695_1 ELAC1 [Homo sapiens]
gi|8574425|dbj|BAA96799.1| D29 [Homo sapiens]
gi|15779120|gb|AAH14624.1| ElaC homolog 1 (E. coli) [Homo sapiens]
gi|119583388|gb|EAW62984.1| elaC homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
gi|123985170|gb|ABM83711.1| elaC homolog 1 (E. coli) [synthetic construct]
gi|123998805|gb|ABM87031.1| elaC homolog 1 (E. coli) [synthetic construct]
Length = 363
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 69/274 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 235 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+ +A+ K ++L HFS R+K + R
Sbjct: 292 STPQMAATFAKLCRAKRLVLTHFSQRYKPVALAR 325
>gi|72382759|ref|YP_292114.1| RNAse Z [Prochlorococcus marinus str. NATL2A]
gi|123620865|sp|Q46JB7.1|RNZ_PROMT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|72002609|gb|AAZ58411.1| RNAse Z [Prochlorococcus marinus str. NATL2A]
Length = 314
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 89/233 (38%), Gaps = 41/233 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL---------YRMKPPTIIVPSCIKEDVEQLFEVHRRM 108
+FI+H H DHI GLP +A+ GL Y P + SC L+ R+
Sbjct: 58 IFITHMHGDHIYGLPGLLASIGLAGSSSGIELYGPAPLKNFIDSC-------LYNSSSRL 110
Query: 109 DHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVVYSVKQKL--------KQ 159
+S H + +E +L VK H I S Y V QK K
Sbjct: 111 AYSLKFHRVENAANNKEILFEDSELEVKTAPLKHRIPS---FAYRVNQKTRPGRFDIEKA 167
Query: 160 EYLGLPGDEIKKLKSSGTEITYT----------VTTPEVAFTGDTMSDFIVDEANIDVLR 209
+ G+P + G E+ P + +D + E+ I++ R
Sbjct: 168 KSKGIPPGPVYADLQRGEEVRLEDGRIFSGKEFCGPPRPGVSMVYCTDTVYTESAIEISR 227
Query: 210 -ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
A +L+ ESTY T E A + GH+ + + A K ++L H S R+
Sbjct: 228 KADLLIHESTYSYKET--EMAYERGHSTATMAAQIAAKANVDQLILTHLSPRY 278
>gi|417238087|ref|ZP_12035818.1| ribonuclease BN [Escherichia coli 9.0111]
gi|386213865|gb|EII24290.1| ribonuclease BN [Escherichia coli 9.0111]
Length = 311
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLVAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|335045118|ref|ZP_08538141.1| ribonuclease Z [Oribacterium sp. oral taxon 108 str. F0425]
gi|333758904|gb|EGL36461.1| ribonuclease Z [Oribacterium sp. oral taxon 108 str. F0425]
Length = 301
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 30/221 (13%)
Query: 58 LFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ +H H DHI GLP M ++ R KP +I P +K V+ L RM EL +
Sbjct: 57 ICFTHYHADHISGLPGMLLSMGNAERTKPVRLIGPKGLKRVVDGL-----RMIAPELPFS 111
Query: 117 LVGLDV-GEEFCMRKDLFV-KAFKTYHVIQSQGYVVYSVKQKLK-----QEYLGLPGDEI 169
L +++ GE + + FV +AFK H I GY + S+ +K K E G+P
Sbjct: 112 LEYVEIAGEVETFQSESFVIEAFKVQHSIPCYGYRL-SIPRKGKFSVERAEEQGVPLRCW 170
Query: 170 KKLKSSGT-EITYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
+L+ T E + TP+ V + DT + E A + + E
Sbjct: 171 NRLQHGETVEWEGRIFTPDMVMGEARKGISVVYCTDTRPVSRISEMAKG---ADLFICEG 227
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
Y + A+ + H + E + E K + L H+S
Sbjct: 228 MYGKED-KAGNAKKHKHMTMEEAARLGREAEPKEMWLTHYS 267
>gi|386624972|ref|YP_006144700.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
gi|349738709|gb|AEQ13415.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
Length = 311
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|90109091|pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 61 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 116
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 117 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLF 176
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 177 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 233 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 276
>gi|299744755|ref|XP_002910835.1| 3' tRNA processing endoribonuclease [Coprinopsis cinerea
okayama7#130]
gi|298406273|gb|EFI27341.1| 3' tRNA processing endoribonuclease [Coprinopsis cinerea
okayama7#130]
Length = 946
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 188 VAFTGDT-MSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246
+AF+GDT +D IV A +L+ E+T DD VE AR H+ + + +
Sbjct: 796 IAFSGDTEPTDSIVHAGR----NATLLIHEATMSDDQ--VELARQKKHSTFGQAIGIGRR 849
Query: 247 FENKAILLIHFSARH 261
+ ILL HFSARH
Sbjct: 850 MNARTILLTHFSARH 864
>gi|218700743|ref|YP_002408372.1| ribonuclease Z [Escherichia coli IAI39]
gi|432869636|ref|ZP_20090229.1| ribonuclease Z [Escherichia coli KTE147]
gi|254808632|sp|B7NNU8.1|RBN_ECO7I RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218370729|emb|CAR18542.1| binuclear zinc phosphodiesterase [Escherichia coli IAI39]
gi|431410222|gb|ELG93384.1| ribonuclease Z [Escherichia coli KTE147]
Length = 305
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK V A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|343197782|pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1).
gi|343197783|pdb|3ZWF|B Chain B, Crystal Structure Of Human Trnase Z, Short Form (Elac1)
Length = 368
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 107/268 (39%), Gaps = 69/268 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 56 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 115
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E++++ V+R E T++ LD E + D VK
Sbjct: 116 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 174
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 175 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 232
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD S + D A +L+ E+T D +++A+++GH
Sbjct: 233 PQDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGH 289
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHK 262
+ +A+ K ++L HFS R+K
Sbjct: 290 STPQMAATFAKLCRAKRLVLTHFSQRYK 317
>gi|357637314|ref|ZP_09135189.1| ribonuclease Z [Streptococcus macacae NCTC 11558]
gi|357585768|gb|EHJ52971.1| ribonuclease Z [Streptococcus macacae NCTC 11558]
Length = 309
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-RMDHSEL 113
+FI+H H DH+ GLP ++++R + T I P IK V + R + +
Sbjct: 59 IFITHLHGDHVFGLPGFLSSRAFQANEEQTDLEIYGPVGIKALVMACLKASRAHLPYPIY 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY V ++ L E L G+P G
Sbjct: 119 FHEFNEKHLGK--ILETDKFTVYAEKLDHTIFCVGYRVVQKDLEGTLDAEKLKTAGVPFG 176
Query: 167 DEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ +GTEI ++ P+ + D +A++ + L A +LV E
Sbjct: 177 PLFGKIKNGQNVILDNGTEIIAKDYLSAPKKGKVITILGDTRKTDASVRLALGADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR +GH+ E + A+ K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARRHGHSTNMEAAQVAKLASAKKLLLNHVSAR 278
>gi|241888625|ref|ZP_04775932.1| ribonuclease Z [Gemella haemolysans ATCC 10379]
gi|241864648|gb|EER69023.1| ribonuclease Z [Gemella haemolysans ATCC 10379]
Length = 306
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 35/229 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY---RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DH+ GL ++++R TI P IK+ +E+ + H L+
Sbjct: 59 IFISHLHADHVLGLIGFLSSRSFLLDTNASKVTIYGPVGIKDFIEK----NMMFTHCSLS 114
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLG-LPG 166
+++ +++ E C+ K + V ++ H ++ GY + KQK K LG +PG
Sbjct: 115 YSVEYIEISSEQCIIDNKTVTVFSYPLAHNVECFGYKIIFKKQKGSLDADKLRELGIMPG 174
Query: 167 DEIKKLKSSGT-EITYTVTTP-----------EVAFTGDTMSDFIVDEANIDVLRARILV 214
+++K S T E V E++ DT + N V + I++
Sbjct: 175 PFYREIKESDTFEFNGKVYNSSEFLSEDKPGKEISIIPDTR---YFEGLNEFVKNSNIII 231
Query: 215 MESTYV--DDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E TY+ +D+ AR H + ++ + E + + + L H SAR+
Sbjct: 232 TECTYLLKEDA---HHARKNYHLSILDVEKMIENSKVENLFLTHISARY 277
>gi|425423085|ref|ZP_18804253.1| ribonuclease Z [Escherichia coli 0.1288]
gi|408343640|gb|EKJ58034.1| ribonuclease Z [Escherichia coli 0.1288]
Length = 305
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 39/245 (15%)
Query: 39 LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKED 97
L AF++G+ + +FISH H DH+ GLP + +R + ++P TI P I+E
Sbjct: 48 LHTAFNLGKL-------DKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREF 100
Query: 98 VEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVK 154
VE R+ S ++ L +++G + L V A+ H ++ GY + +
Sbjct: 101 VETAL----RISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKP 156
Query: 155 QKLKQEYLGL----PGDEIKKLKSSGT-------------EITYTVTTPEVAFTGDTMSD 197
L + L PG ++LK+ T + V +A GDT
Sbjct: 157 GALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP- 215
Query: 198 FIVDEANIDVLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
+A +D+ + ++V E+T D T +A GH+ + A + +++ H
Sbjct: 216 ---CDAALDLAKGVDVMVHEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITH 270
Query: 257 FSARH 261
S+R+
Sbjct: 271 VSSRY 275
>gi|405356089|ref|ZP_11025109.1| Ribonuclease Z [Chondromyces apiculatus DSM 436]
gi|397090685|gb|EJJ21526.1| Ribonuclease Z [Myxococcus sp. (contaminant ex DSM 436)]
Length = 307
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 108/273 (39%), Gaps = 46/273 (16%)
Query: 21 KVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPM 73
+ GL++ H ++F D G R + + + +F +H H DH G+
Sbjct: 21 NLSGLAVKAHADLLLF-------DCGEGSQRQMVRYGTGFTVDAVFFTHFHADHYLGIIG 73
Query: 74 YVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVH-RRMDHSELNHTLVGLDVGEEFCMRKD 131
++ T G+ R +P + P K ++Q + M H L DV R
Sbjct: 74 FLRTLGMTGRSEPMRLYGPPSAKRVLQQAVYLGVESMSFPVEIHELKDGDV----VRRNG 129
Query: 132 LFVKAFKTYHVIQSQGYVVYSVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITY---T 182
+ A H I + Y + ++ + LG+P G KL+ G +T
Sbjct: 130 YTIHAIAADHRINALAYALVEDERPGRFNLEVARSLGVPEGPSFGKLQ-RGEAVTLEDGR 188
Query: 183 VTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD 231
PE + +GDT V +A+ D A +LV EST+ DD E+A++
Sbjct: 189 TVKPEDVLGAARPGRRLVISGDTRPCPAVVKASRD---ADLLVHESTFSDDEQ--ERAKE 243
Query: 232 YGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
H+ E A + + ++L H S+RH D
Sbjct: 244 THHSTAREAARVAREAGARRLVLTHLSSRHDTD 276
>gi|329769181|ref|ZP_08260601.1| hypothetical protein HMPREF0433_00365 [Gemella sanguinis M325]
gi|328839400|gb|EGF88978.1| hypothetical protein HMPREF0433_00365 [Gemella sanguinis M325]
Length = 179
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 58 LFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELN 114
+FISH H DH+ GL ++++R L K +I+ P IKE +EQ + + L
Sbjct: 59 IFISHLHADHVLGLIGFLSSRSFLLDKKESEVIIYGPKGIKEFIEQ----NLKFTFCSLT 114
Query: 115 HTLVGLDVGEEFCM--RKDLFVKAFKTYHVIQSQGYVVYSVKQK 156
+++ +++ EE C+ K + V A+ H I GY + KQK
Sbjct: 115 YSIKYIEISEEACIIDSKTVGVYAYPLRHNIDCFGYKIVFKKQK 158
>gi|307706046|ref|ZP_07642867.1| ribonuclease Z [Streptococcus mitis SK564]
gi|307620404|gb|EFN99519.1| ribonuclease Z [Streptococcus mitis SK564]
Length = 309
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-GD 167
H +G+ F K V A + H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDQDSLGKIFETDK-FTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAGVPFGP 177
Query: 168 EIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDVLRARILV 214
K+K+ GTEI ++ P + GDT D + + A +LV
Sbjct: 178 LFGKIKNGQDVVLEDGTEIKAADYISAPRPGKIITILGDTRK---TDASVRLAVNADVLV 234
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
ESTY + AR++GH+ + + A + K +LL H SAR
Sbjct: 235 HESTYGKGDEKI--ARNHGHSTNMQAAQVAVEAGAKRLLLNHISAR 278
>gi|161950082|ref|YP_404026.2| ribonuclease Z [Shigella dysenteriae Sd197]
gi|309785029|ref|ZP_07679662.1| ribonuclease Z [Shigella dysenteriae 1617]
gi|308927399|gb|EFP72873.1| ribonuclease Z [Shigella dysenteriae 1617]
Length = 305
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 39/245 (15%)
Query: 39 LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKED 97
L+ AF+ G+ + +FISH H DH+ GLP + +R + + +P TI P I+E
Sbjct: 48 LNTAFNPGKL-------DKIFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREF 100
Query: 98 VEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVK 154
VE R+ S ++ L +++G + L V A+ H ++ GY + +
Sbjct: 101 VETAL----RISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKP 156
Query: 155 QKLKQEYLGL----PGDEIKKLKSSGT-------------EITYTVTTPEVAFTGDTMSD 197
L + L PG ++LK+ T + V +A GDT
Sbjct: 157 GALNAQALKAAGVPPGPLFQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP- 215
Query: 198 FIVDEANIDVLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
+A +D+ + ++V E+T D T +A GH+ + A + +++ H
Sbjct: 216 ---CDAALDLAKGVDVMVHEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITH 270
Query: 257 FSARH 261
S+R+
Sbjct: 271 VSSRY 275
>gi|206578868|ref|YP_002237337.1| ribonuclease Z [Klebsiella pneumoniae 342]
gi|290508470|ref|ZP_06547841.1| ribonuclease Z [Klebsiella sp. 1_1_55]
gi|254808641|sp|B5XNW7.1|RBN_KLEP3 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|206567926|gb|ACI09702.1| ribonuclease Z [Klebsiella pneumoniae 342]
gi|289777864|gb|EFD85861.1| ribonuclease Z [Klebsiella sp. 1_1_55]
Length = 306
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 32/231 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLKSSGTEITY------------TVTTP--EVAFTGDTMSDFIVDEANIDVLRARIL 213
+LK G +T TP +A GDT +A A ++
Sbjct: 174 LFHQLKR-GQRVTLEDGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVM 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
V E+T + E+A GH+ + A++ ++ HFS+R+ +
Sbjct: 230 VHETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|336429302|ref|ZP_08609269.1| ribonuclease Z [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336002913|gb|EGN33010.1| ribonuclease Z [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 303
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 32/224 (14%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
+ + +H H DHI GLP + T G R +P +I P + V L R+ EL
Sbjct: 55 DIICFTHYHADHISGLPGMLLTMGNAERTEPLLLIGPKGLTRVVNSL-----RVIAPELP 109
Query: 115 HTLVGLDVGE-EFCMRKDLF-VKAFKTYHVIQSQGYVVYSVK----QKLKQEYLGLPGDE 168
+ +++ E E + + F ++AF+ H + GY + + Q K + L +P
Sbjct: 110 FPIEYMELTEPEHSIDFEGFRIEAFRVNHNVVCYGYSIIIERSGRFQLDKAQALNIPKQY 169
Query: 169 IKKLKSSGTEITYTVTTPEVAFTGDTM-------------SDFIVDEANI-DVLRARILV 214
+L+ T+ TPE FT D + +D E + + A + +
Sbjct: 170 WSRLQKG-----ETIETPENVFTPDMVMGPPRKGIKLTYCTDTRPTEGIVKNAAEADLFI 224
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
E Y + ++AR+Y H E + A++ + K + L H+S
Sbjct: 225 CEGMY-GEPEKKDKAREYKHMTFLEAADMAKRAQVKQMWLTHYS 267
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 50/197 (25%)
Query: 49 PSRALSQNF--LFISHAHMDHIGGLPMY---VATRGLYRMKPPTIIVPSCIKEDVEQLFE 103
PSR L+ + I+H H+DH+G L + + G M PT + + ED ++
Sbjct: 52 PSRDLNSALSCIIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVM- 110
Query: 104 VHRRMDH--------SELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ 155
V RR + +E ++ +D+ + + KDL ++A+ HVI G ++ K
Sbjct: 111 VDRRGEEELFSSDQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVI---GAAMFYAK- 166
Query: 156 KLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD--TMSDFIVDEANIDVLRARIL 213
V E+ +TGD D + A ID LR +L
Sbjct: 167 ---------------------------VGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLL 199
Query: 214 VMESTYVDDSTTVEQAR 230
+ ESTY +TT+ +R
Sbjct: 200 ITESTY---ATTIRDSR 213
>gi|300818132|ref|ZP_07098344.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|415876919|ref|ZP_11543242.1| ribonuclease Z [Escherichia coli MS 79-10]
gi|300529276|gb|EFK50338.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|342928273|gb|EGU96995.1| ribonuclease Z [Escherichia coli MS 79-10]
Length = 305
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + I++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKIIITHVSSRY 275
>gi|331683945|ref|ZP_08384541.1| ribonuclease Z [Escherichia coli H299]
gi|432617372|ref|ZP_19853486.1| ribonuclease Z [Escherichia coli KTE75]
gi|450190833|ref|ZP_21890994.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
gi|331078897|gb|EGI50099.1| ribonuclease Z [Escherichia coli H299]
gi|431153792|gb|ELE54687.1| ribonuclease Z [Escherichia coli KTE75]
gi|449320141|gb|EMD10178.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
Length = 305
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEI 169
+V + GE F +RK V A+ H ++ GY + + L + L G+P +
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 170 KKLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ +G IT V +A GDT A +D+ + ++V
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CNAALDLAKGVDVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|81241825|gb|ABB62535.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 311
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 39/245 (15%)
Query: 39 LDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKED 97
L+ AF+ G+ + +FISH H DH+ GLP + +R + + +P TI P I+E
Sbjct: 54 LNTAFNPGKL-------DKIFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREF 106
Query: 98 VEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVK 154
VE R+ S ++ L +++G + L V A+ H ++ GY + +
Sbjct: 107 VETAL----RISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKP 162
Query: 155 QKLKQEYLGL----PGDEIKKLKSSGT-------------EITYTVTTPEVAFTGDTMSD 197
L + L PG ++LK+ T + V +A GDT
Sbjct: 163 GALNAQALKAAGVPPGPLFQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP- 221
Query: 198 FIVDEANIDVLRA-RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIH 256
+A +D+ + ++V E+T D T +A GH+ + A + +++ H
Sbjct: 222 ---CDAALDLAKGVDVMVHEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITH 276
Query: 257 FSARH 261
S+R+
Sbjct: 277 VSSRY 281
>gi|330003569|ref|ZP_08304684.1| ribonuclease Z [Klebsiella sp. MS 92-3]
gi|328536909|gb|EGF63208.1| ribonuclease Z [Klebsiella sp. MS 92-3]
Length = 288
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 95
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 96 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGP 155
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK + G I + TP +A GDT +A A ++V
Sbjct: 156 LFHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVMV 212
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 213 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 264
>gi|238895792|ref|YP_002920528.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|378979891|ref|YP_005228032.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|402779704|ref|YP_006635250.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|449061120|ref|ZP_21738565.1| ribonuclease Z [Klebsiella pneumoniae hvKP1]
gi|238548110|dbj|BAH64461.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|364519302|gb|AEW62430.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|402540640|gb|AFQ64789.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|448873369|gb|EMB08466.1| ribonuclease Z [Klebsiella pneumoniae hvKP1]
Length = 306
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK + G I + TP +A GDT +A A ++V
Sbjct: 174 LFHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|395822916|ref|XP_003784749.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Otolemur
garnettii]
Length = 363
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 67/273 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSSSVVAKQPIEIYGPIGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKEFARVNVADGPPTEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKSSGTEITYTVTT--P 186
F+ +H I S G+ V K QKLK LG+P G KLK+ + + T P
Sbjct: 178 FRLFHRIPSFGFSVMEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLDNGVTVFP 235
Query: 187 E-----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
E + GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 EDVLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+A+ K ++L HFS R+K + R
Sbjct: 293 TPQMAATFAKSCHAKRLVLTHFSQRYKPVALAR 325
>gi|18313978|ref|NP_560645.1| mRNA 3'-end processing factor [Pyrobaculum aerophilum str. IM2]
gi|18161552|gb|AAL64827.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 430
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 59 FISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
F+SHAH+DH GGLP +YV+T+ P T+ + + D +L + E+ T+
Sbjct: 55 FLSHAHLDHSGGLPSLYVSTKTPLYSTPLTMELSDLMYTDAIKLSGYYLPYTLEEVRETM 114
Query: 118 ---VGLDVGEEFCMRKDLFVKAFKTYH-------VIQSQGYVV 150
V L GE + +D + + H VI+ +GYVV
Sbjct: 115 SSAVPLTYGEPVEIGRDAVITVYNAGHIPGSAISVIEVEGYVV 157
>gi|345305668|ref|XP_001509223.2| PREDICTED: zinc phosphodiesterase ELAC protein 1-like
[Ornithorhynchus anatinus]
Length = 387
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 40/174 (22%)
Query: 134 VKAFKTYHVIQSQGYVVYSVK-------QKLKQEYLGL-PGDEIKKLKSSGTEITY---- 181
VKAF+ +H I S G+ + + QKLK LG+ PG KLK+ GT I
Sbjct: 176 VKAFRLFHRIPSFGFSLEEKERPGRLNAQKLKD--LGVQPGPAYGKLKN-GTAIVLENGL 232
Query: 182 ----------TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD 231
V ++ GD V + + + R L++ +DDS + +AR+
Sbjct: 233 TVSPRDVMEEPVPGRKICILGDCSGP--VGDGGVKLCREADLLVHEATLDDSQ-MAKARE 289
Query: 232 YGHTHLSEIVEYAEKFENKAILLIHFSARHK------------VDEIRRAVDAV 273
+GH+ E+A+ K ++L HFS R+K V E++R ++V
Sbjct: 290 HGHSTPLVAAEFAKLCGAKKLVLTHFSQRYKPTALAGEGETDDVQELKRQAESV 343
>gi|336398251|ref|ZP_08579051.1| RNAse Z [Prevotella multisaccharivorax DSM 17128]
gi|336067987|gb|EGN56621.1| RNAse Z [Prevotella multisaccharivorax DSM 17128]
Length = 305
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 40/235 (17%)
Query: 58 LFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVE-QLFEVHRRMDHSELNH 115
+FISH H DH GL ++T G L R+ P + P+ +K ++ QL R+ + + H
Sbjct: 59 VFISHLHGDHCFGLIGLISTFGMLGRIAPLHVYAPAALKPLLDDQLKLFCNRLSYDVVFH 118
Query: 116 TLVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGD 167
+D + + +D L V+ H + GY+ + + L + +P
Sbjct: 119 ---AVDTSKHKAVYEDGSLTVETLPLAHRVPCAGYL-FRERPTLPHIRRDMIDCFNIPVS 174
Query: 168 EIKKLK-------SSGTEITYT-VTTP-----EVAFTGDT--MSDF--IVDEANIDVLRA 210
+I +K + GT I + +T P A+ DT M D +V+ N+
Sbjct: 175 QINNIKMGADWTTADGTVIPNSRLTLPADAPRSYAYCCDTRYMPDLYQLVEGVNL----- 229
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDE 265
L +STY DS+ ++A+ Y H+ + + A+ +LL HFSAR+ +E
Sbjct: 230 --LYHDSTY--DSSCADRAKIYYHSTSQQAAKVAQDAHVGKLLLGHFSARYDNEE 280
>gi|416343827|ref|ZP_11677727.1| Ribonuclease Z [Escherichia coli EC4100B]
gi|320199859|gb|EFW74448.1| Ribonuclease Z [Escherichia coli EC4100B]
Length = 311
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + L
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 123
Query: 117 LVGLDVGE--EFCMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + VGE + +RK V A+ H ++ GY + + L + L PG
Sbjct: 124 IVEIGVGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMV 236
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 237 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|68073799|ref|XP_678814.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499400|emb|CAI00194.1| conserved hypothetical protein [Plasmodium berghei]
Length = 862
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 46/210 (21%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY--RMKPPTIIVPSCIKEDV----EQLFEVHRRMDHS 111
+FISHAH DH G+ ++ R + + PP I++P +K + E ++ R+ ++
Sbjct: 640 IFISHAHADHHVGIYYFLYIRKMIFPHLDPPLILIPKTLKNWMNLFNELFLDIEMRIIYN 699
Query: 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKK 171
E L++ E L + FK H+ +S G + + G +I
Sbjct: 700 E-----NDLEIKEIISEDNLLTLHLFKVNHIKESYG--------------IKIEGKDI-- 738
Query: 172 LKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARD 231
G+ + T P D + F D IL+ E+T+ DD VE A +
Sbjct: 739 ----GSIVYSADTRP-----CDNVKKFAKD--------CNILIHEATF-DDELLVE-AIN 779
Query: 232 YGHTHLSEIVEYAEKFENKAILLIHFSARH 261
H+ + E ++ + K ++L HFS R+
Sbjct: 780 KKHSTIHEAMQISLDVNCKTLILTHFSQRY 809
>gi|387607959|ref|YP_006096815.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|432392786|ref|ZP_19635616.1| ribonuclease Z [Escherichia coli KTE21]
gi|432771234|ref|ZP_20005573.1| ribonuclease Z [Escherichia coli KTE50]
gi|432962440|ref|ZP_20152093.1| ribonuclease Z [Escherichia coli KTE202]
gi|433063733|ref|ZP_20250655.1| ribonuclease Z [Escherichia coli KTE125]
gi|284922259|emb|CBG35344.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|430917942|gb|ELC38981.1| ribonuclease Z [Escherichia coli KTE21]
gi|431314931|gb|ELG02863.1| ribonuclease Z [Escherichia coli KTE50]
gi|431474231|gb|ELH54053.1| ribonuclease Z [Escherichia coli KTE202]
gi|431581387|gb|ELI53838.1| ribonuclease Z [Escherichia coli KTE125]
Length = 305
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYL---GLPGDEIK 170
L +++G + L V A+ H ++ GY + + L + L G+P +
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 171 KLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
+ +G IT V +A GDT +A +D+ + ++V
Sbjct: 176 QALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|405756130|ref|YP_006679594.1| ribonuclease Z [Listeria monocytogenes SLCC2540]
gi|404225330|emb|CBY76692.1| ribonuclease Z [Listeria monocytogenes SLCC2540]
Length = 310
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R TI P+ I E VE R+ + L +
Sbjct: 63 IFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVETSL----RLSGTRLTYK 118
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ-KLKQEYLGLPGDE----I 169
+ ++ ++F V A H ++S GY +V KQ L E L + G E
Sbjct: 119 INFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKVDGVEAGPVF 178
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK +G +T + P+ ++ GDT +E + L A ILV
Sbjct: 179 QKLK-NGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKE--TANELEL-ALNADILVH 234
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ D + A +Y H+ + + A+ K ++L H S+R+ D
Sbjct: 235 EATFEGDK--AKMAGEYMHSTTLQAAKLAKTANVKKLILTHISSRYDRD 281
>gi|332523610|ref|ZP_08399862.1| ribonuclease Z [Streptococcus porcinus str. Jelinkova 176]
gi|332314874|gb|EGJ27859.1| ribonuclease Z [Streptococcus porcinus str. Jelinkova 176]
Length = 310
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V+ V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQASEEQTDVDIFGPLGIKSFVQNSLSVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H + ++G+ + D F V A + H I GY V ++ L E L G+P G
Sbjct: 119 YHEMTEDNLGK--ILETDKFTVYAERLAHTIFCLGYRVVQKDLEGTLDAEALKEAGVPFG 176
Query: 167 DEIKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARI 212
K+K +G ++ ++ P+ + GDT D A +
Sbjct: 177 PLFGKIK-NGQDVVLEDGRLIQAQDFISAPKKGKIITILGDTRKSLASQRLAKD---ADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV E+TY + AR++GH+ + + A+ K +LL H SAR
Sbjct: 233 LVHEATYGKGDDKI--ARNHGHSTNLQAAQIAKDAGVKRLLLNHVSAR 278
>gi|171185999|ref|YP_001794918.1| beta-lactamase domain-containing protein [Pyrobaculum neutrophilum
V24Sta]
gi|170935211|gb|ACB40472.1| beta-lactamase domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 425
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 59 FISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
F+SHAH+DH GGLP +YV+TR P T+ + + D +L + E+ T+
Sbjct: 55 FLSHAHLDHSGGLPSLYVSTRTPLYSTPLTMELSDLMYTDAIKLSGYYLPYTQEEVRETM 114
Query: 118 ---VGLDVGEEFCMRKDLFVKAFKTYHVIQS 145
V L GE + +D + A+ H+ S
Sbjct: 115 ASAVPLTYGEPVEIGRDAVLTAYNAGHIPGS 145
>gi|218705802|ref|YP_002413321.1| ribonuclease Z [Escherichia coli UMN026]
gi|300896943|ref|ZP_07115426.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331663785|ref|ZP_08364695.1| ribonuclease Z [Escherichia coli TA143]
gi|417587288|ref|ZP_12238058.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|422334240|ref|ZP_16415247.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|432354211|ref|ZP_19597484.1| ribonuclease Z [Escherichia coli KTE2]
gi|432402563|ref|ZP_19645315.1| ribonuclease Z [Escherichia coli KTE26]
gi|432426827|ref|ZP_19669328.1| ribonuclease Z [Escherichia coli KTE181]
gi|432461293|ref|ZP_19703442.1| ribonuclease Z [Escherichia coli KTE204]
gi|432476518|ref|ZP_19718516.1| ribonuclease Z [Escherichia coli KTE208]
gi|432518342|ref|ZP_19755530.1| ribonuclease Z [Escherichia coli KTE228]
gi|432538463|ref|ZP_19775365.1| ribonuclease Z [Escherichia coli KTE235]
gi|432632058|ref|ZP_19867984.1| ribonuclease Z [Escherichia coli KTE80]
gi|432641772|ref|ZP_19877606.1| ribonuclease Z [Escherichia coli KTE83]
gi|432666667|ref|ZP_19902248.1| ribonuclease Z [Escherichia coli KTE116]
gi|432775364|ref|ZP_20009635.1| ribonuclease Z [Escherichia coli KTE54]
gi|432887253|ref|ZP_20101327.1| ribonuclease Z [Escherichia coli KTE158]
gi|432913451|ref|ZP_20119148.1| ribonuclease Z [Escherichia coli KTE190]
gi|433019346|ref|ZP_20207561.1| ribonuclease Z [Escherichia coli KTE105]
gi|433053879|ref|ZP_20241058.1| ribonuclease Z [Escherichia coli KTE122]
gi|433068584|ref|ZP_20255373.1| ribonuclease Z [Escherichia coli KTE128]
gi|433159316|ref|ZP_20344153.1| ribonuclease Z [Escherichia coli KTE177]
gi|433179127|ref|ZP_20363526.1| ribonuclease Z [Escherichia coli KTE82]
gi|254808635|sp|B7N5N4.1|RBN_ECOLU RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218432899|emb|CAR13793.1| binuclear zinc phosphodiesterase [Escherichia coli UMN026]
gi|300359254|gb|EFJ75124.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331059584|gb|EGI31561.1| ribonuclease Z [Escherichia coli TA143]
gi|345336424|gb|EGW68860.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|373244785|gb|EHP64264.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|430875384|gb|ELB98926.1| ribonuclease Z [Escherichia coli KTE2]
gi|430925034|gb|ELC45707.1| ribonuclease Z [Escherichia coli KTE26]
gi|430955759|gb|ELC74541.1| ribonuclease Z [Escherichia coli KTE181]
gi|430988983|gb|ELD05452.1| ribonuclease Z [Escherichia coli KTE204]
gi|431005134|gb|ELD20342.1| ribonuclease Z [Escherichia coli KTE208]
gi|431050964|gb|ELD60640.1| ribonuclease Z [Escherichia coli KTE228]
gi|431069352|gb|ELD77681.1| ribonuclease Z [Escherichia coli KTE235]
gi|431170258|gb|ELE70452.1| ribonuclease Z [Escherichia coli KTE80]
gi|431181655|gb|ELE81517.1| ribonuclease Z [Escherichia coli KTE83]
gi|431200961|gb|ELE99679.1| ribonuclease Z [Escherichia coli KTE116]
gi|431317976|gb|ELG05745.1| ribonuclease Z [Escherichia coli KTE54]
gi|431416251|gb|ELG98738.1| ribonuclease Z [Escherichia coli KTE158]
gi|431439751|gb|ELH21084.1| ribonuclease Z [Escherichia coli KTE190]
gi|431530823|gb|ELI07499.1| ribonuclease Z [Escherichia coli KTE105]
gi|431569951|gb|ELI42880.1| ribonuclease Z [Escherichia coli KTE122]
gi|431583656|gb|ELI55651.1| ribonuclease Z [Escherichia coli KTE128]
gi|431677548|gb|ELJ43623.1| ribonuclease Z [Escherichia coli KTE177]
gi|431700947|gb|ELJ65871.1| ribonuclease Z [Escherichia coli KTE82]
Length = 305
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S +++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWIDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|187918610|ref|YP_001884173.1| ribonuclease Z [Borrelia hermsii DAH]
gi|254808616|sp|B2S197.1|RNZ_BORHD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|119861458|gb|AAX17253.1| metal-dependent hydrolase [Borrelia hermsii DAH]
Length = 319
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 41/256 (16%)
Query: 43 FDIGRCPSRALSQN--------FLFISHAHMDHIGGL---PMYVATRGLYRMKPPTIIVP 91
FD G +L + + I+H H DHI GL M +A G R +P TII P
Sbjct: 35 FDCGEATQMSLRKQKISWQKIKVICITHLHADHITGLLGIVMLMAQSGDTRKEPLTIIGP 94
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVV 150
IK+ ++ E+ R + ++ + + ++ E K ++ K H I+ GY+
Sbjct: 95 IGIKKYLDANIELLRVHKNYDIIYKEIIINKTEPILYEDKKKRIEYIKLKHSIECVGYLF 154
Query: 151 YSVKQ-----KLKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEVAFTGDTMSD----F 198
+ K E L +P I+K G E+ + E+ G++ +
Sbjct: 155 IEKDKPGKFNTQKAESLNIPKGPIRKTLQEGHEVILNGKKILPSEIL--GESQKGLKFAY 212
Query: 199 IVDEANIDVLRARI-----LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253
I D A + L I +++EST+ +D +D L + A K KA +
Sbjct: 213 ITDTAYFEELSTHIKNFNLVIIESTFKND------LKDEAKKKLHLTAKLAAKITKKANV 266
Query: 254 ----LIHFSARHKVDE 265
LIHFS R+ +++
Sbjct: 267 YQTGLIHFSERYTLNK 282
>gi|115376741|ref|ZP_01463967.1| ribonuclease Z [Stigmatella aurantiaca DW4/3-1]
gi|310824834|ref|YP_003957192.1| ribonuclease z [Stigmatella aurantiaca DW4/3-1]
gi|115366228|gb|EAU65237.1| ribonuclease Z [Stigmatella aurantiaca DW4/3-1]
gi|309397906|gb|ADO75365.1| Ribonuclease Z [Stigmatella aurantiaca DW4/3-1]
Length = 307
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 100/252 (39%), Gaps = 37/252 (14%)
Query: 41 LAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPS 92
L FD G R + + +F +H H DH G+ ++ T G+ R P + P
Sbjct: 34 LLFDCGEGSQRQMVRFGTGFTVEAVFFTHFHADHYLGIIGFLRTLGMMGREHPIQLYGPP 93
Query: 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS 152
+ + Q VH +D + L G+ R V+A H I + GYV+
Sbjct: 94 PARRLLHQ--AVHLGVDTLSFPVEIHELKDGDR-VRRSGYSVQAVGVDHRINALGYVMEE 150
Query: 153 VKQK-----LKQEYLGLP-GDEIKKLKSSGTEITY---TVTTPE-----------VAFTG 192
+ K LG+P G KL+ G +T T PE + +G
Sbjct: 151 DGRPGRFHLEKARALGVPEGPYFGKLQR-GEAVTLENGTTVRPEDVLGASRPGRKLVISG 209
Query: 193 DTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
DT + +A D A +LV EST+ DD E+A + H+ E A + +
Sbjct: 210 DTRPCTSLAQAAKD---ADLLVHESTFSDDEQ--ERALETRHSTAREAARVARDAGARRL 264
Query: 253 LLIHFSARHKVD 264
+L H S+RH D
Sbjct: 265 ILTHLSSRHDTD 276
>gi|420373682|ref|ZP_14873747.1| ribonuclease Z [Shigella flexneri 1235-66]
gi|391317016|gb|EIQ74399.1| ribonuclease Z [Shigella flexneri 1235-66]
Length = 305
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE + R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETVL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|335032244|ref|ZP_08525648.1| ribonuclease Z [Streptococcus anginosus SK52 = DSM 20563]
gi|333767587|gb|EGL44824.1| ribonuclease Z [Streptococcus anginosus SK52 = DSM 20563]
Length = 309
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPVGIKSFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L G+P G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAEKLKVAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLEDGTKIIAADYISAPRPGKIITILGDTRKTHASVRLAVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAVDAV 273
STY + AR++GH+ + E A + K +LL H SAR + ++RR ++
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAEVAREAGAKRLLLNHISARFLSKDIGQMRRDASSI 294
>gi|300936832|ref|ZP_07151723.1| ribonuclease Z [Escherichia coli MS 21-1]
gi|300458075|gb|EFK21568.1| ribonuclease Z [Escherichia coli MS 21-1]
Length = 305
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE + L
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSWTDYPLE-- 117
Query: 117 LVGLDVGEEF--CMRKDLFVKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDE 168
+V + GE F +RK + A+ H ++ GY + + L + L PG
Sbjct: 118 IVEIGAGEIFDDGLRK---LTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 169 IKKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILV 214
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVNVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 231 HEATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|423068819|ref|ZP_17057607.1| ribonuclease Z [Streptococcus intermedius F0395]
gi|355366119|gb|EHG13838.1| ribonuclease Z [Streptococcus intermedius F0395]
Length = 309
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPVGIKSFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRVMQKDLEGTLDAEKLKVAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLEDGTKIIAADYISAPRPGKIITILGDTRKTHASVRLAVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRAVDAV 273
STY + AR++GH+ + E A++ K +LL H SAR + ++RR +V
Sbjct: 237 STYGKGDEKI--ARNHGHSTNLQAAEVAKEAGVKRLLLNHISARFLSKDIGQMRRDASSV 294
>gi|418966246|ref|ZP_13517994.1| ribonuclease Z [Streptococcus constellatus subsp. constellatus
SK53]
gi|383340626|gb|EID18919.1| ribonuclease Z [Streptococcus constellatus subsp. constellatus
SK53]
Length = 309
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPVGIKSFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L G+P G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAEKLKVAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPE----VAFTGDTMSDFIVDEANIDV-LRARI 212
K+K+ GT+I ++ P + GDT + A++ + + A +
Sbjct: 177 PLFGKVKNGEDVVLEDGTKIIAADYISAPRPGKIITILGDTRKTY----ASVRLAVNADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR---HKVDEIRRA 269
LV ESTY + AR++GH+ + E A++ K +LL H SAR + ++RR
Sbjct: 233 LVHESTYGKGDEKI--ARNHGHSTNLQAAEVAKEAGVKRLLLNHISARFLSKDIGQMRRD 290
Query: 270 VDAV 273
++
Sbjct: 291 ASSI 294
>gi|293405737|ref|ZP_06649729.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298381420|ref|ZP_06991019.1| ribonuclease Z [Escherichia coli FVEC1302]
gi|291427945|gb|EFF00972.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298278862|gb|EFI20376.1| ribonuclease Z [Escherichia coli FVEC1302]
Length = 311
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S +++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWIDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
+ LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|424788035|ref|ZP_18214797.1| ribonuclease Z [Streptococcus intermedius BA1]
gi|422113144|gb|EKU16893.1| ribonuclease Z [Streptococcus intermedius BA1]
Length = 309
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPIGIKNFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L GLP G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAERLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLADGTKIIAADYISAPRPGKVITILGDTRKTHASVRLAINADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + A+++GH+ + E A++ K +LL H SAR
Sbjct: 237 STYGKGDEII--AKNHGHSTNLQAAEVAKEAGAKRLLLNHISAR 278
>gi|386035827|ref|YP_005955740.1| ribonuclease Z [Klebsiella pneumoniae KCTC 2242]
gi|424831617|ref|ZP_18256345.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|339762955|gb|AEJ99175.1| ribonuclease Z [Klebsiella pneumoniae KCTC 2242]
gi|414709052|emb|CCN30756.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 306
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK + G I + TP +A GDT +A A ++V
Sbjct: 174 LFHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|322516620|ref|ZP_08069534.1| ribonuclease Z [Streptococcus vestibularis ATCC 49124]
gi|322124890|gb|EFX96314.1| ribonuclease Z [Streptococcus vestibularis ATCC 49124]
Length = 309
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V L R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDEHKLGL------VMEDDKFAVYADKLDHTIFCIGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+++GH+ + + A+ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKNHGHSTNMQAAQVAKDASAKRLLLNHVSAR 278
>gi|425456612|ref|ZP_18836319.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 9807]
gi|389802247|emb|CCI18675.1| Similar to tr|Q4BZ42|Q4BZ42_CROWT Beta-lactamase-like [Microcystis
aeruginosa PCC 9807]
Length = 289
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 36/218 (16%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTI-IVPSCIKEDVEQLFEVHRRMDHSELNHT 116
LF SH+H DHI G P + T R I VPS ++Q +H +M H
Sbjct: 68 LFFSHSHWDHIQGFPFF--TPAFIRGNTFNIYAVPSPNGATIKQ--TLHDQMLHPNFP-- 121
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSG 176
V L + MR DL F + ++ Y SV E + L G
Sbjct: 122 -VPLQI-----MRADL---EFYNLEMGETLHYGDVSV--------------ETRPLNHPG 158
Query: 177 TEITYTVTTPEVAFTGDTMSDFIVDEANIDVL----RARILVMESTYVDDSTTVEQARD- 231
+ Y V ++ T ++ D + +VL +A ++++++TY D+ +
Sbjct: 159 EAVGYRVNWQGLSAAYITDTEHFPDRLDDNVLALAWQADVMIIDATYTDEEYNDPKYSKV 218
Query: 232 -YGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
+GH+ + V+ A+ + K ++L H H D + R
Sbjct: 219 GWGHSTWQQAVKIAQAAQVKQLVLFHHDPAHNDDFLDR 256
>gi|312862724|ref|ZP_07722964.1| ribonuclease Z [Streptococcus vestibularis F0396]
gi|311101584|gb|EFQ59787.1| ribonuclease Z [Streptococcus vestibularis F0396]
Length = 309
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V L R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDEHKLGL------VMEDDKFAVYADKLDHTIFCIGYRVVQKDLEGTLDAEALKVAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+++GH+ + + A+ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKNHGHSTNMQAAQVAKDASAKRLLLNHVSAR 278
>gi|421277038|ref|ZP_15727858.1| ribonuclease Z [Streptococcus mitis SPAR10]
gi|395876319|gb|EJG87395.1| ribonuclease Z [Streptococcus mitis SPAR10]
Length = 309
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A + H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDQASLGK--ILETDKFTVYAEELDHTIFCVGYRVIQKDLEGTLDAEKLKVAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GTEI ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKIKNGQDVILEDGTEIKAADYISAPRPGKIITILGDTRKTNASVRLGINADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR++GH+ + + A + K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAQIALEAGAKRLLLNHISAR 278
>gi|307352923|ref|YP_003893974.1| RNA-metabolising metallo-beta-lactamase [Methanoplanus petrolearius
DSM 11571]
gi|307156156|gb|ADN35536.1| RNA-metabolising metallo-beta-lactamase [Methanoplanus petrolearius
DSM 11571]
Length = 448
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+ +H H+DHIG +P +R P I P K +EQ E ++ +N+ +
Sbjct: 77 IVCTHGHLDHIGAIPKLA-----HRYNAPIIGTPYTAKL-IEQQIEGEKKFG---VNNKV 127
Query: 118 VGLDVGEEFC--MRKDLFVKAFKTYHVI---------QSQGYVVYSVKQKL-KQEYLGLP 165
L G+++ + KDL ++ H I QG +VY++ KL + LG P
Sbjct: 128 FALRAGKKYRYEISKDLNIEFVNIQHSIIDTAMAVLHTPQGAIVYALDFKLDRTPVLGNP 187
Query: 166 GDEIKKLKSSGTE--ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDS 223
D I +++ G E I V + V G S+ + + DV+ ++Y DD
Sbjct: 188 PD-IARMQELGREGVIALIVESTNVRLPGRCPSERVAQKLVRDVM--------TSYEDDK 238
Query: 224 TTVEQARDYGH-THLSEIVEYAEKFENKAILL 254
+ + H + I E A + K +LL
Sbjct: 239 NAIIVSTFSSHIARVKTIAECAHEIGRKPVLL 270
>gi|338530761|ref|YP_004664095.1| ribonuclease Z [Myxococcus fulvus HW-1]
gi|337256857|gb|AEI63017.1| ribonuclease Z [Myxococcus fulvus HW-1]
Length = 307
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 44/272 (16%)
Query: 21 KVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQ-------NFLFISHAHMDHIGGLPM 73
+ GL++ H ++F D G R + + + +F +H H DH G+
Sbjct: 21 NLSGLAVKAHADLLLF-------DCGEGSQRQMVRYGTGFTVDAVFFTHFHADHYLGIIG 73
Query: 74 YVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132
++ T G+ R +P + P + + Q VH ++ + L G+ RK
Sbjct: 74 FLRTLGMTGRSEPIHLYGPPSARRLLHQ--AVHLGVESLSFPVEIHELKDGD-VVPRKGY 130
Query: 133 FVKAFKTYHVIQSQGYVVYSVKQKLK-----QEYLGLP-GDEIKKLKSSGTEITYT---V 183
V A H I + GY + ++ + LG+P G KL+ G +T
Sbjct: 131 AVHAVGVDHRINALGYALVEDERPGRFNLETARALGVPEGPSFGKLQR-GEPVTLADGRT 189
Query: 184 TTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDY 232
PE + +GDT + +A+ D A +LV EST+ DD E+A +
Sbjct: 190 VKPEDVLGAPRPGRKLVISGDTRPCPALVKASRD---ADLLVHESTFSDDEQ--ERAVET 244
Query: 233 GHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
H+ E A++ + ++L H S+RH D
Sbjct: 245 RHSTAREAARVAKEAGARRLVLTHLSSRHDTD 276
>gi|392428963|ref|YP_006469974.1| ribonuclease Z [Streptococcus intermedius JTH08]
gi|419776289|ref|ZP_14302211.1| ribonuclease Z [Streptococcus intermedius SK54]
gi|383845700|gb|EID83100.1| ribonuclease Z [Streptococcus intermedius SK54]
gi|391758109|dbj|BAM23726.1| ribonuclease Z [Streptococcus intermedius JTH08]
Length = 309
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPIGIKNFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L GLP G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAESLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLADGTKIIAADYISAPRPGKVITILGDTRKTHASVRLAINADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + A+++GH+ + E A++ K +LL H SAR
Sbjct: 237 STYGKGDEII--AKNHGHSTNLQAAEVAKEAGAKRLLLNHISAR 278
>gi|262043315|ref|ZP_06016444.1| ribonuclease Z [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259039339|gb|EEW40481.1| ribonuclease Z [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 288
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 36/237 (15%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 95
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL--------- 164
+ L ++VG ++ + V A+ H ++ G Y + Q K L
Sbjct: 96 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYG---YRIAQHDKPGTLNAAQLIADGVP 152
Query: 165 PGDEIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRAR 211
PG +LK + G I + TP +A GDT +A A
Sbjct: 153 PGPLFHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALEMARGAD 209
Query: 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
++V E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 210 VMVHETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 264
>gi|428304260|ref|YP_007141085.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245795|gb|AFZ11575.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 782
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 74/262 (28%)
Query: 56 NFLFISHAHMDHIGGLPMY---------VATRGLYRMKPPTIIVPSCIK-----EDVEQL 101
N + I+HAH DHIG LP++ + T G + +++ C+K ED EQL
Sbjct: 245 NLILITHAHQDHIGALPVFHQRFPATPMICTAGTREIA--HVMLTDCLKVQQSNEDFEQL 302
Query: 102 FEVHRRMDHSELNHTLVGLD---VGEEFCMRKDLFVKAFKTYHVIQSQG-YVVYSVKQKL 157
F D +L+ TL L VG++F L V+ H++ + Y+ Y + L
Sbjct: 303 F------DEIDLDQTLFQLQTQPVGQDFEPLPGLKVRFIHAGHIVGAACVYIRYGDRSLL 356
Query: 158 KQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD--TMSDFIVDEANI-DVLRARILV 214
+TGD T + D + D+ +A IL+
Sbjct: 357 --------------------------------YTGDYNTTNSRTTDGLRLADLPQADILI 384
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA-- 272
ESTY D+ +A++ T L + V AE + +LI A + EI A+
Sbjct: 385 TESTYGADTHPSRKAQE---TELLQAV--AEVVSHGGNVLIPAFALGRAQEIILAIRTSA 439
Query: 273 ------VPAPLAGRVFALTEGF 288
+P + G V A+T+ F
Sbjct: 440 LFHKLKIPVYIDGLVRAVTDVF 461
>gi|259910153|ref|YP_002650509.1| ribonuclease Z [Erwinia pyrifoliae Ep1/96]
gi|224965775|emb|CAX57307.1| Ribonuclease Z [Erwinia pyrifoliae Ep1/96]
Length = 304
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 114/294 (38%), Gaps = 50/294 (17%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
T ++E +G + LQG + + + I R P + +FI+
Sbjct: 11 GTPSRERNVTGIALDLQGVR--------NNVWLFDCGEGTQHQILRTPIKPGRIEKIFIT 62
Query: 62 HAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL--V 118
H H DHI GLP + +R + ++P T+ PS IK VE + S LN L +
Sbjct: 63 HLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSGIKTFVETSLS----LSGSWLNFPLEII 118
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLP-GDEIK 170
+ GE F V A+ H ++ GY + QKL G+P G
Sbjct: 119 EISAGEVF-QDAHFRVTAYPLTHPVECYGYRIDEHDKPGALAAQKLAAH--GVPTGPYFY 175
Query: 171 KLKSSGTEITYT--------------VTTPEVAFTGDTMSDFIVDE--ANIDVLRARILV 214
LK G +T + +A GDT E A +DV +V
Sbjct: 176 DLK-QGRSVTLADGRIINGWDYVGSKIKGRSLAIFGDTAPTAAAVELAAGVDV-----MV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + + A++ K +++ H S+R+ + R
Sbjct: 230 HEATL--EVAMEEKANARGHSSTVQAAQVAQQSGAKKLIITHLSSRYLRHDCER 281
>gi|226322516|ref|ZP_03798034.1| hypothetical protein COPCOM_00287 [Coprococcus comes ATCC 27758]
gi|225209133|gb|EEG91487.1| ribonuclease Z [Coprococcus comes ATCC 27758]
Length = 302
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 42/258 (16%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRG-LYRMKPPTIIVPSCIKEDVEQL--------FEVHR 106
+ + +H H DHI GLP + T G R +P T+I P ++ V L FE+H
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRKEPLTLIGPKGLERVVSSLRVIAPELPFEIHY 114
Query: 107 RMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQ 159
R E+ E+ +KAF+ H + GY + + V++ +Q
Sbjct: 115 R----EITEP-------EQIFEMDGYRLKAFRVKHNVICYGYTIEIDRAGKFDVQRATEQ 163
Query: 160 EYLGLPGDEIKKLKSSGT-EITYTVTTPEVAFTGDTMS---DFIVDEANIDVLR-----A 210
+ +P + K L+ T E+ + TPE+ + D D +R +
Sbjct: 164 K---IPKEYWKHLQKGETVELDGRILTPEMVLGPPRRGIKLTYCTDTRPTDSIRKNAKGS 220
Query: 211 RILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA--RHKVDEIRR 268
+ + E Y + +A +Y H E A++ E + L H+S RH + +
Sbjct: 221 DLFICEGMY-GEKEKAAKAVEYKHMTFYEAANLAKEAEVGEMWLTHYSPSLRHPEEYMDE 279
Query: 269 AVDAVPAPLAGRVFALTE 286
P +AG+ TE
Sbjct: 280 VRAIFPHAIAGKDRMTTE 297
>gi|157151193|ref|YP_001450284.1| ribonuclease Z [Streptococcus gordonii str. Challis substr. CH1]
gi|189043794|sp|A8AWX4.1|RNZ_STRGC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|157075987|gb|ABV10670.1| metallo-beta-lactamase superfamily protein [Streptococcus gordonii
str. Challis substr. CH1]
Length = 309
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDIEIYGPKGIKNFVMSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY + ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRIMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKS-------SGTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D ++++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEGGTKIIAADYISAPRPGKTITILGDTRKTDSSVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV E+TY + AR +GH+ + E A++ K +LL H SAR
Sbjct: 233 LVHEATYGKGDE--KMARKHGHSTNMQAAEVAKEAGVKQLLLNHVSAR 278
>gi|333987916|ref|YP_004520523.1| Ribonuclease Z [Methanobacterium sp. SWAN-1]
gi|333826060|gb|AEG18722.1| Ribonuclease Z [Methanobacterium sp. SWAN-1]
Length = 342
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 84/293 (28%)
Query: 41 LAFDIGRCPSRALSQ--------NFLFISHAHMDHIGGLPMYV---ATRGLYRMKPPTII 89
+ FD G R +S+ + +FI+H H DH G+P V A RG R +P I
Sbjct: 31 MLFDCGEGTQRQMSRARLSPMKVDKIFITHFHGDHFLGVPGMVQSMAFRG--RKEPLHIF 88
Query: 90 VPSCIKEDVEQL---------FE--VHR-----------------------RMDHSELNH 115
P + + VE++ FE VH + D +ELN
Sbjct: 89 GPEGLSKIVEKIKGLGYFSMSFEICVHEIPDGTPEGYDGSVDRSIEDDRSIKADETELNE 148
Query: 116 TLVGLDVGE----EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK--LKQEYLGL---PG 166
GL+ G + +D V K H + + Y + + +K++ L L PG
Sbjct: 149 K-EGLNEGLFHEIKILEEEDYIVTCCKVEHSVPNLAYCITEKRAPKFIKEKALKLGVKPG 207
Query: 167 DEIKKLKSS-GTEITYTVTTP-----------EVAFTGDT-----MSDFIVDEANIDVLR 209
+ KL+ ++ + P ++ ++GDT M F D
Sbjct: 208 PDFGKLQQGIPVKVGNRIIKPHEVLGSERQGRKIVYSGDTRPCDQMIKFAED-------- 259
Query: 210 ARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
A +L+ EST+ DS +A + GH+ ++ E A K K +++ H S R+K
Sbjct: 260 ATVLIHESTF--DSQNENKAYETGHSTAAKAAEIANKANVKKLIVTHISTRYK 310
>gi|262282439|ref|ZP_06060207.1| ribonuclease Z [Streptococcus sp. 2_1_36FAA]
gi|262261730|gb|EEY80428.1| ribonuclease Z [Streptococcus sp. 2_1_36FAA]
Length = 309
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V R+D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDIEIYGPKGIKNFVMSSLRVSGSRLPYRID 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E + +G + D F V A K H I GY V ++ L + L G
Sbjct: 119 FHEFDENSLGK------ILETDKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GT+I ++ P T + D ++++ + + A +
Sbjct: 173 VPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTITILGDTRKTDSSVRLAVAADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV E+TY + AR +GH+ + E A++ K +LL H SAR
Sbjct: 233 LVHEATYGKGDEKM--ARKHGHSTNMQAAEVAKEAGVKRLLLNHVSAR 278
>gi|161529284|ref|YP_001583110.1| ribonuclease Z [Nitrosopumilus maritimus SCM1]
gi|254808651|sp|A9A3X2.1|RNZ_NITMS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|160340585|gb|ABX13672.1| ribonuclease Z [Nitrosopumilus maritimus SCM1]
Length = 299
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 31/234 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH G+ + T + R + I PS I+E + +V ++
Sbjct: 56 IFVTHLHGDHCVGILGLLQTMSMQNRTESLEIFGPSGIEEFIAANIKV---LNFGLSFPI 112
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL------KQEYLGLPGDEIK 170
L+ E+ + ++ K H I + Y+ + K K K + LG+P E+
Sbjct: 113 LINTIKDEKIFEDEKFLIRTCKANHSIIAFSYL-FEEKDKPGRFNVEKAKELGIPEGELW 171
Query: 171 KLKSSGTEITYT--VTTPE-----------VAFTGDTMSDFIVDEANIDVLRARILVMES 217
+G EIT + PE + +GDTM ++E LV +S
Sbjct: 172 NKLQNGNEITVNEKIIKPEQVLGERRPGKKIGISGDTMPTKELEEF---FEECDYLVFDS 228
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK--VDEIRRA 269
T+++ ++A+D H+ + A+ + K ++L HFSAR++ V+ +R A
Sbjct: 229 TFLEAEK--QKAQDTCHSTAKQAATVAKNAKVKNLVLTHFSARYRDEVEHLREA 280
>gi|340399002|ref|YP_004728027.1| ribonuclease Z [Streptococcus salivarius CCHSS3]
gi|338742995|emb|CCB93503.1| ribonuclease Z (RNAse Z) (tRNAse Z) (tRNA 3 endonuclease)
[Streptococcus salivarius CCHSS3]
Length = 309
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V L R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDEHKLGL------VMENDKFAVYADKLDHTIFCVGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+ +GH+ + + A+ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKSHGHSTNMQAAQVAKDASAKRLLLNHVSAR 278
>gi|329297123|ref|ZP_08254459.1| ribonuclease Z [Plautia stali symbiont]
Length = 303
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 36/228 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + + +P T+ P +++ V+ + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSIAGLTEPVTLYGPKGLRQFVDTALSLSGSYTGYPLE-- 115
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVV-------YSVKQKLKQEYLGLP-GDE 168
+V ++ G + V A+ HV++ GY + + +LK E G+P G
Sbjct: 116 IVEIEAG-PVLDNGEFRVIAYALNHVVECYGYRIEQHDKPGFLDAPRLKAE--GVPRGPW 172
Query: 169 IKKLKS------------SGTEITYTVTTPEV-AFTGDTMSDFIVDE--ANIDVLRARIL 213
+ LK +G + T +V A GDT + + AN DV +
Sbjct: 173 YQDLKQGKRITLEDGREINGADYLGPATKGKVLAIFGDTGPTEVALQLAANADV-----M 227
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
V E+T ++ VE+A GH+ + A++ K ++ HFS+R+
Sbjct: 228 VHETTL--EAAMVEKANGRGHSTTVQAASVAQRAGAKRMIATHFSSRY 273
>gi|325971176|ref|YP_004247367.1| ribonuclease Z [Sphaerochaeta globus str. Buddy]
gi|324026414|gb|ADY13173.1| Ribonuclease Z [Sphaerochaeta globus str. Buddy]
Length = 307
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 28/230 (12%)
Query: 58 LFISHAHMDHIGGLP-MYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + + + + R +P TI P+ +KE + + +RR+ +N+
Sbjct: 58 IFISHMHADHVTGLPGILMLSSQVDRNEPLTIYGPARLKEYI----DANRRILDMYINYE 113
Query: 117 LVGLDVGEEFCMRK--DLFVKAFKTYHVIQSQGYVVYSVKQ-----KLKQEYLGLPGDEI 169
+V + V E + + D + AF +H GYV+ + + + LG+P +
Sbjct: 114 IV-VKVAESGVILETDDFTISAFPLHHTKPCVGYVMQEKDRPGEFHPEQAQQLGVPMGPM 172
Query: 170 KKLKSSGTEIT---------YTVTTPE---VAFTGDTMSDFIVDEANIDVLRARILVMES 217
G IT + V P+ F+ T S ++ A V ++ +L+ E
Sbjct: 173 WGKLQKGLSITLGDGTIIESHQVIGPKREGRKFSYVTDSVYLPSIAE-HVKKSDLLLCEG 231
Query: 218 TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267
+ D E A + H + A++ E + L+H+S R+ E++
Sbjct: 232 MFTAD--MAETAYEKKHMTADQAARIAKEAEVAQLGLLHYSPRYSDRELK 279
>gi|212638820|ref|YP_002315340.1| ribonuclease Z [Anoxybacillus flavithermus WK1]
gi|254808603|sp|B7GHJ4.1|RNZ_ANOFW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|212560300|gb|ACJ33355.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Anoxybacillus flavithermus WK1]
Length = 312
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 34/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV-PSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP + +R + P + P+ I+ VE V + L +
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGETPLFVYGPAGIRSFVETALAV----SGTRLKYE 114
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTY-HVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175
L + E + F+ K H + S G+ + V++ L L DE++ L
Sbjct: 115 LYIEEFTEGVIFEDEQFIVTAKLLDHGLPSYGFRI--VEKDLPGTLL---VDELRALGVK 169
Query: 176 GTEITYTVTTPEVAFTGD--------------------TMSDFIVDEANIDVLRA-RILV 214
I + EV D M D EA++++ +LV
Sbjct: 170 PGPIYQQIKRGEVVTLDDGTVIDGRKFVAPPKKGRMIAIMGDTRYCEASVELAEGVDVLV 229
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
E+T+ + ARDY H+ + E A++ K ++L H S+R++
Sbjct: 230 HEATF--SANEAHLARDYYHSTTVQAAEVAKRARAKQLILTHISSRYQ 275
>gi|119953531|ref|YP_945740.1| ribonuclease Z [Borrelia turicatae 91E135]
gi|254808618|sp|A1R0H8.1|RNZ_BORT9 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|119862302|gb|AAX18070.1| metal-dependent hydrolase [Borrelia turicatae 91E135]
Length = 319
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 35/253 (13%)
Query: 43 FDIGRCPSRALSQN--------FLFISHAHMDHIGGL---PMYVATRGLYRMKPPTIIVP 91
FD G +L + + I+H H DHI GL M +A G R +P TII P
Sbjct: 35 FDCGEATQMSLRKQKISWQKIKMICITHLHADHITGLLGIVMLMAQSGNTRKEPLTIIGP 94
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGYVV 150
IK+ +E E+ R + ++ + + ++ E K ++ K H I GY+
Sbjct: 95 IGIKKYLETNIELLRVHKNYDIIYKEIIINKTESILYEDKKKRIEYIKLKHSIDCVGYLF 154
Query: 151 YSVKQ-----KLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD-------- 197
+ K E L +P I+K G E+ + + D + +
Sbjct: 155 IEKNKPGKFDTQKAESLNIPKGPIRKKLQEGHEV---ILNEKKILPSDILGEPQKGLKFA 211
Query: 198 FIVDEANIDVLRARI-----LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAI 252
+I D A + L I +++EST+ ++ E+A+ H + +K +
Sbjct: 212 YITDTAYSEELSTHIKNFNLVIIESTFKNELK--EEAKKKLHLTAKLAAKITKKAKVHQT 269
Query: 253 LLIHFSARHKVDE 265
LIHFS R+ +++
Sbjct: 270 GLIHFSERYTLNK 282
>gi|425092586|ref|ZP_18495671.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|405611812|gb|EKB84578.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
Length = 306
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++VG ++ + V A+ H ++ GY + + + L PG
Sbjct: 114 YPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGP 173
Query: 168 EIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANIDVLRARILV 214
+LK + G I + TP +A GDT +A A ++V
Sbjct: 174 LFHQLKRGQRVELADGRVIDGSHYLGPATPGKTLAIFGDTAP---CPQALEMARGADVMV 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + A++ ++ HFS+R+ + R
Sbjct: 231 HETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLR 282
>gi|322387379|ref|ZP_08060989.1| ribonuclease Z [Streptococcus infantis ATCC 700779]
gi|419842648|ref|ZP_14365985.1| ribonuclease Z [Streptococcus infantis ATCC 700779]
gi|321141908|gb|EFX37403.1| ribonuclease Z [Streptococcus infantis ATCC 700779]
gi|385703593|gb|EIG40706.1| ribonuclease Z [Streptococcus infantis ATCC 700779]
Length = 309
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVHR-----RMD 109
+FI+H H DHI GLP ++++R + T I P IK V V ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYKIH 118
Query: 110 HSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E N +G + D F V A + H I GY V ++ L E L G
Sbjct: 119 FHEFNQDSLGK------ILETDKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G K+K+ GTEI ++ P + D A++ + + A +
Sbjct: 173 VPFGPLFGKIKNGQDVILEDGTEIKAADYISAPRPGKIITILGDTRKTNASVRLAVNADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + AR++GH+ + + A + K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--ARNHGHSTNMQAAQVATEAGAKRLLLNHISAR 278
>gi|52550291|gb|AAU84140.1| metallo-beta-lactamase [uncultured archaeon GZfos37B2]
Length = 446
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 38 SLDLAFDIGRCPSRALSQNF------LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVP 91
SLDL IG P + + + +H H+DHIG + ++ +R + P I P
Sbjct: 53 SLDL-IKIGAIPDDTVMKGVNGTVRAIVCTHGHLDHIGAI-----SKLAHRYRAPIIATP 106
Query: 92 SCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYH---------V 142
I ++QL + R+ + LV ++ GE + K+L ++ + H V
Sbjct: 107 YTIGL-IKQLIKSERKF---PAENELVEMNAGETKEVSKNLSIEFIRVQHSTLDCVFIAV 162
Query: 143 IQSQGYVVYSVKQKL-KQEYLGLPGDEIKKLKSSGTEITYTVTT--PEVAFTGDTMSDFI 199
+G ++Y+ K+ + LG P D IK+LK G E + + T A G T S+ I
Sbjct: 163 HTPRGILLYANDFKMDRTPTLGEPPD-IKRLKQIGKEGVFLMITESTNAAIAGKTPSERI 221
Query: 200 VDEANIDVL 208
DVL
Sbjct: 222 AKAMLNDVL 230
>gi|423124990|ref|ZP_17112669.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
gi|376400435|gb|EHT13048.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
Length = 306
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 32/235 (13%)
Query: 56 NFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELN 114
N +FI+H H DH+ GLP + +R + P T+ P +KE VE R+ S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTLYGPKGLKEFVETAL----RLSGSWTD 113
Query: 115 HTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL------PGD 167
+ L ++V + + F V A+ H ++ GY + + + L PG
Sbjct: 114 YPLAIVEVEPGLVLDEAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAAQLIAEGVPPGP 173
Query: 168 EIKKLKSSGT-----------EITYTVTTP--EVAFTGDTMSDFIVDEANIDVLRA-RIL 213
++LK T TTP ++A GDT A +++ R ++
Sbjct: 174 LFQRLKQGLTVELEDGRVIDGRRYLGPTTPGKKLAIFGDTAP----CPAALELARGVDVM 229
Query: 214 VMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
V E T + E+A GH+ + A ++ HFS+R+ + +R
Sbjct: 230 VHEVTL--EQAMAEKANSRGHSTSQQTAALAHDAGVGTLIATHFSSRYDAEGCQR 282
>gi|167752350|ref|ZP_02424477.1| hypothetical protein ALIPUT_00594 [Alistipes putredinis DSM 17216]
gi|167660591|gb|EDS04721.1| putative ribonuclease Z [Alistipes putredinis DSM 17216]
Length = 309
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 32/232 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GL ++T GLY R P I P+ + E + H R ++L +
Sbjct: 58 VFISHLHGDHVFGLFPLISTLGLYGRRTPLKIFGPAPLGE----MLGCHLRYFDTQLPYE 113
Query: 117 LVGLDVGEE----FCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL--KQEYLGLPGDEIK 170
+ ++V + L V + H I + GY+ + L ++E + G I
Sbjct: 114 IEWVEVDTTRHALLFENRTLEVWSVPLRHRIPTSGYLFREKQPPLNVRKEKITEYGLSIA 173
Query: 171 KLKSS---------------GTEITYTVTTPE-VAFTGDTMSDFIVDEANIDVLRARILV 214
++ ++ E+TY P A+ DT +A V A +L
Sbjct: 174 RITAAKRGEDILLDNGDTLPNAELTYRPYAPRSYAYLSDTSWS---PKAAKLVEGADLLY 230
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266
E+TY + AR+ GH+ E A K +++ H+S+R+K + +
Sbjct: 231 HETTYAHAEHKI--ARERGHSTTVEAARIALKAGAGRLVIGHYSSRYKEESV 280
>gi|55821233|ref|YP_139675.1| ribonuclease Z [Streptococcus thermophilus LMG 18311]
gi|55823145|ref|YP_141586.1| ribonuclease Z [Streptococcus thermophilus CNRZ1066]
gi|116627960|ref|YP_820579.1| ribonuclease Z [Streptococcus thermophilus LMD-9]
gi|386086835|ref|YP_006002709.1| Ribonuclease Z [Streptococcus thermophilus ND03]
gi|386344908|ref|YP_006041072.1| ribonuclease Z [Streptococcus thermophilus JIM 8232]
gi|387909937|ref|YP_006340243.1| ribonuclease Z [Streptococcus thermophilus MN-ZLW-002]
gi|76363383|sp|Q5LZD1.1|RNZ_STRT1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|76363384|sp|Q5M3Y3.1|RNZ_STRT2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|122267444|sp|Q03K89.1|RNZ_STRTD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|55737218|gb|AAV60860.1| metallo-beta-lactamase superfamily protein [Streptococcus
thermophilus LMG 18311]
gi|55739130|gb|AAV62771.1| metallo-beta-lactamase superfamily protein [Streptococcus
thermophilus CNRZ1066]
gi|116101237|gb|ABJ66383.1| RNAse Z [Streptococcus thermophilus LMD-9]
gi|312278548|gb|ADQ63205.1| Ribonuclease Z [Streptococcus thermophilus ND03]
gi|339278369|emb|CCC20117.1| ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Streptococcus thermophilus JIM 8232]
gi|387574872|gb|AFJ83578.1| ribonuclease Z [Streptococcus thermophilus MN-ZLW-002]
Length = 309
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V + R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSIRTSGTRLSYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDENSLGL------VMEDDKFAVYADKLDHTIFCVGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+ +GH+ + + A K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKSHGHSTNMQAAQVARDASAKRLLLNHVSAR 278
>gi|334364590|ref|ZP_08513572.1| putative ribonuclease Z [Alistipes sp. HGB5]
gi|313159180|gb|EFR58553.1| putative ribonuclease Z [Alistipes sp. HGB5]
Length = 307
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 40/247 (16%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVH 105
RC L +FISH H DH+ GL ++T LY R P + P+ E + H
Sbjct: 47 RCGINPLKLRAVFISHLHGDHVFGLFPLISTLALYGRKTPLRVFAPAPFGE----ILACH 102
Query: 106 RRMDHSELNHTLVGLDVGEE----FCMRKDLFVKAFKTYHVIQSQGYV------------ 149
R SEL + +V +V + L V + H + + G++
Sbjct: 103 LRFFDSELPYPVVWTEVDTTKHALLLENRTLEVWSIPLRHRVPTAGFLFREKEPPLNVEK 162
Query: 150 ---------VYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPE-VAFTGDTMSDFI 199
V + + E + LP E+ E+TY P A+ DT +F
Sbjct: 163 FKIAKYGLTVAQITAAKRGEEIALPTGEV----IPNAELTYRPYAPRSYAYLSDT--NFS 216
Query: 200 VDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259
A + A ++ E+TY + + A++ GH+ ++ + A K K +++ H+S+
Sbjct: 217 AKAATL-AKGADLMYHEATYA--AAEQKTAKERGHSTSADAAKAALKAGAKRLIIGHYSS 273
Query: 260 RHKVDEI 266
R+K + I
Sbjct: 274 RYKNENI 280
>gi|428307781|ref|YP_007144606.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249316|gb|AFZ15096.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 894
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 74/262 (28%)
Query: 56 NFLFISHAHMDHIGGLPMY---------VATRGLYRMKPPTIIVPSCIK-----EDVEQL 101
N + I+HAH DHIG LP++ + T G + +++ C+K ED EQL
Sbjct: 359 NLILITHAHQDHIGALPVFHQRFPATPMICTAGTREIA--HVMLTDCLKVQQSNEDFEQL 416
Query: 102 FEVHRRMDHSELNHTLVGLD---VGEEFCMRKDLFVKAFKTYHVIQSQG-YVVYSVKQKL 157
F D +L+ TL L VG++F L V+ H++ + Y+ Y + L
Sbjct: 417 F------DEIDLDQTLFQLQTQPVGKDFEPLPGLKVRFIHAGHIVGAACVYIRYGERSLL 470
Query: 158 KQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGD--TMSDFIVDEANI-DVLRARILV 214
+TGD T + D + D+ +A IL+
Sbjct: 471 --------------------------------YTGDYNTTNSRTTDGLRLADLPQADILI 498
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA-- 272
ESTY D+ +A++ T L + V AE + +LI A + EI A+
Sbjct: 499 TESTYGADTHPSRKAQE---TELLQAV--AEVVSSGGNVLIPAFALGRAQEIILAIRTSA 553
Query: 273 ------VPAPLAGRVFALTEGF 288
+P + G V A+T+ F
Sbjct: 554 LFHKLKIPVYIDGLVRAVTDVF 575
>gi|418027880|ref|ZP_12666482.1| Ribonuclease Z [Streptococcus thermophilus CNCM I-1630]
gi|445378692|ref|ZP_21426841.1| ribonuclease Z [Streptococcus thermophilus MTCC 5460]
gi|445392917|ref|ZP_21428567.1| ribonuclease Z [Streptococcus thermophilus MTCC 5461]
gi|354689391|gb|EHE89388.1| Ribonuclease Z [Streptococcus thermophilus CNCM I-1630]
gi|444749325|gb|ELW74227.1| ribonuclease Z [Streptococcus thermophilus MTCC 5461]
gi|444749588|gb|ELW74479.1| ribonuclease Z [Streptococcus thermophilus MTCC 5460]
Length = 309
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V + R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSIRTSGTRLSYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDENSLGL------VMEDDKFAVYADKLDHTIFCVGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+ +GH+ + + A K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKSHGHSTNMQAAQVARDASAKRLLLNHVSAR 278
>gi|351710473|gb|EHB13392.1| Zinc phosphodiesterase ELAC protein 1 [Heterocephalus glaber]
Length = 363
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 109/277 (39%), Gaps = 67/277 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELKEFSHVDKADSTPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGITISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHT 235
+ ++ GD S + D A +L+ E+T D +++A+++GH+
Sbjct: 236 QDVLKKPIVGRKICILGDC-SGVVGDGGMKLCFDADLLIHEATL--DDAQMDKAKEHGHS 292
Query: 236 HLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+A+ K ++L HFS R+K + R +A
Sbjct: 293 TPQMAATFAKLCHAKRLVLTHFSQRYKPVALAREGEA 329
>gi|387873158|ref|YP_005804546.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
gi|283480259|emb|CAY76175.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
Length = 318
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 114/294 (38%), Gaps = 50/294 (17%)
Query: 2 ATKAKEEEKSGRGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFIS 61
T ++E +G + LQG + + + I R P + +FI+
Sbjct: 25 GTPSRERNVTGIALDLQGVR--------NNVWLFDCGEGTQHQILRTPIKPGRIEKIFIT 76
Query: 62 HAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL--V 118
H H DHI GLP + +R + ++P T+ PS IK VE + S LN L +
Sbjct: 77 HLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSGIKTFVETSLS----LSGSWLNFPLEII 132
Query: 119 GLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYS-------VKQKLKQEYLGLP-GDEIK 170
+ GE F V A+ H ++ GY + QKL G+P G
Sbjct: 133 EISAGEVF-QDAHFRVTAYPLTHPVECYGYRIDEHDKPGALAAQKLAAH--GVPTGPYFY 189
Query: 171 KLKSSGTEITYT--------------VTTPEVAFTGDTMSDFIVDE--ANIDVLRARILV 214
LK G +T + +A GDT E A +DV +V
Sbjct: 190 DLK-QGRSVTLADGRIINGWDYVGSKIKGRSLAIFGDTAPTAAAVELAAGVDV-----MV 243
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
E+T + E+A GH+ + + A++ K +++ H S+R+ + R
Sbjct: 244 HEATL--EVAMEEKANARGHSSTVQAAQVAQQSGAKKLIITHLSSRYLRHDCER 295
>gi|149276254|ref|ZP_01882398.1| ribonuclease Z [Pedobacter sp. BAL39]
gi|149232774|gb|EDM38149.1| ribonuclease Z [Pedobacter sp. BAL39]
Length = 303
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 34/237 (14%)
Query: 51 RALSQNFLFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMD 109
+A +++FISH H DH GL ++T L R+KP I P + E +E F +
Sbjct: 51 KASKIDYIFISHLHGDHYFGLIGLLSTMHLNGRIKPIYIFAPGPLMEILELQFRHSETVI 110
Query: 110 HSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEI 169
++ + DV +D+ V++ H I G+ ++ K++L++ I
Sbjct: 111 RYDIEFVPLVADVSRTIFENQDVSVESIVLNHRIPCTGF-KFTEKKRLRKLM-------I 162
Query: 170 KKLKSSGTEITYTVTTPEVA--------------FTGDT--------MSDFIVDEANIDV 207
+KL++ I Y A +T D+ SD + +++ + V
Sbjct: 163 EKLEAENVPINYYSLLKRGADLNFPDGRLLRNEEYTVDSDQPRSYCYCSDTLFNDSYLPV 222
Query: 208 L-RARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263
+ +L E+T++ + +++A HT + E A+ + +L+ HFS+R+K+
Sbjct: 223 IANCDLLYHEATFLHE--MLDRANQTHHTTALQAAEAAKMVGARKLLIGHFSSRYKI 277
>gi|126642311|ref|YP_001085295.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii ATCC
17978]
Length = 244
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 45/218 (20%)
Query: 82 RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRK---DLFVKAFK 138
R KP +I P ++++Q FE+ ++ L ++L +DV E ++ + V+A
Sbjct: 4 RSKPLIVIAP----KEIQQWFEITAQLTDLYLPYSLQFIDVNEAMQPQQITDEFIVQAHP 59
Query: 139 TYHVIQSQGYVVY--SVKQKLKQE---YLGLP-GDEIKKLKSSGTEITYTVTTPEVAFTG 192
H + S + +Y S+++KL + LG+P GD LK + F G
Sbjct: 60 LSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDMWGHLKRGYN----------IEFEG 109
Query: 193 DTM--SDFI----------------VDEANIDVLR-ARILVMESTYVDDSTTVEQ-ARDY 232
T+ DFI E +D + A++L+ ESTY+ T +++ +
Sbjct: 110 QTLKAQDFIKIQNHQVHAIIGGDNDQPELLVDACKDAQLLIHESTYL--QTVLDKVGKGP 167
Query: 233 GHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAV 270
H+ + E+AE+ ++L HFS RH+ ++A+
Sbjct: 168 MHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 205
>gi|417708316|ref|ZP_12357349.1| ribonuclease Z [Shigella flexneri VA-6]
gi|420332146|ref|ZP_14833802.1| ribonuclease Z [Shigella flexneri K-1770]
gi|333001416|gb|EGK20984.1| ribonuclease Z [Shigella flexneri VA-6]
gi|391251041|gb|EIQ10260.1| ribonuclease Z [Shigella flexneri K-1770]
Length = 305
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E V E +R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFV----ETAQRISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|427809963|ref|ZP_18977028.1| hypothetical protein BN17_15751 [Escherichia coli]
gi|412970142|emb|CCJ44785.1| hypothetical protein BN17_15751 [Escherichia coli]
Length = 311
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMESKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|423070114|ref|ZP_17058890.1| ribonuclease Z [Streptococcus intermedius F0413]
gi|355366435|gb|EHG14153.1| ribonuclease Z [Streptococcus intermedius F0413]
Length = 309
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP +++TR + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSTRSFQANEEQTDIEIYGPIGIKNFVMTSLRVSGSRLPYRIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A K H I GY + ++ L E L GLP G
Sbjct: 119 FHEFDEKHLGK--ILETDKFTVYAEKLDHSIFCVGYRIMQKDLEGTLDAESLKAAGLPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GT+I ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKVKNGEDVVLADGTKIIAADYISAPRPGKVITILGDTRKTHASVRLAINADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + A+++GH+ + E A++ K +LL H SAR
Sbjct: 237 STYGKGDEII--AKNHGHSTNLQAAEVAKEAGAKHLLLNHISAR 278
>gi|348576621|ref|XP_003474085.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Cavia
porcellus]
Length = 363
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 111/278 (39%), Gaps = 69/278 (24%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-----MKPPTIIVPSCIKEDVEQLFEV-HRRMDHS 111
+FI+H H DH GLP + T L +P I P +++ + + E+ H +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSSSVVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 112 ELNHTLVG--------------------------------LDVGEEFCMRKD---LFVKA 136
+ H LV LD E + D VKA
Sbjct: 118 YVVHELVPTADQCPTEELRESSHVAKADSAPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 137 FKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT- 180
F+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGITISP 235
Query: 181 -----YTVTTPEVAFTGDTMSDFIVDEANIDVLR-ARILVMESTYVDDSTTVEQARDYGH 234
+ ++ GD +V + + + A +L+ E+T D +++A+++GH
Sbjct: 236 QDVLKKPIVGRKICILGDCSG--VVGDGGVKLCSDADLLIHEATL--DDAQMDKAKEHGH 291
Query: 235 THLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
+ +A+ K ++L HFS R+K + R +A
Sbjct: 292 STPQMAATFAKLCRAKRLILTHFSQRYKPVALAREGEA 329
>gi|417935542|ref|ZP_12578859.1| ribonuclease Z [Streptococcus infantis X]
gi|343402451|gb|EGV14956.1| ribonuclease Z [Streptococcus infantis X]
Length = 309
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A + H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDQDSLGK--ILETDKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GTEI ++ P + D A++ + + A +LV E
Sbjct: 177 PLFGKIKNGQDVILEDGTEIKAADYISAPRPGKIITILGDTRKTNASVRLGVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR++GH+ + + A + K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAQVATEAGAKRLLLNHISAR 278
>gi|322391620|ref|ZP_08065089.1| ribonuclease Z [Streptococcus peroris ATCC 700780]
gi|321145703|gb|EFX41095.1| ribonuclease Z [Streptococcus peroris ATCC 700780]
Length = 309
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPRGIKSFVLTSLRVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A + H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDQDSLGK--ILETDKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GTEI ++ P + D +A++ + + A +LV E
Sbjct: 177 PLFGKIKNGQDVILEDGTEIKAADYISAPRPGKIITILGDTRKTDASVRLGVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
STY + AR++GH+ + + A + K +LL H SAR
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAQVATEAGAKRLLLNHISAR 278
>gi|228476927|ref|ZP_04061572.1| ribonuclease Z [Streptococcus salivarius SK126]
gi|418017978|ref|ZP_12657534.1| ribonuclease Z [Streptococcus salivarius M18]
gi|228251501|gb|EEK10646.1| ribonuclease Z [Streptococcus salivarius SK126]
gi|345526827|gb|EGX30138.1| ribonuclease Z [Streptococcus salivarius M18]
Length = 309
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 33/228 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDV-EQLFEVHRRMDH--- 110
+FI+H H DHI GLP ++A+R + T + P IK+ V L R+ +
Sbjct: 59 IFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGPVGIKQYVMTSLRTSGTRLPYHVH 118
Query: 111 -SELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---G 163
E++ +GL M D F V A K H I GY V ++ L E L G
Sbjct: 119 FKEIDEHKLGL------VMENDKFAVYADKLDHTIFCIGYRVVQKDLEGTLDAEALKAAG 172
Query: 164 LP-GDEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARI 212
+P G ++K+ GT+I ++ P+ + D A++ + L A +
Sbjct: 173 VPFGPLFGQIKNGQDVVLEDGTKIIAKDFISAPKKGKVITILGDTRKTNASVRLGLGADV 232
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260
LV ESTY + A+ +GH+ + + A+ K +LL H SAR
Sbjct: 233 LVHESTYGKGDEKI--AKSHGHSTNMQAAQVAKDASAKRLLLNHVSAR 278
>gi|417938417|ref|ZP_12581715.1| ribonuclease Z [Streptococcus infantis SK970]
gi|343391507|gb|EGV04082.1| ribonuclease Z [Streptococcus infantis SK970]
Length = 309
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 25/232 (10%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT---IIVPSCIKEDVEQLFEVH-RRMDHSEL 113
+FI+H H DHI GLP ++++R + T I P IK V V R+ +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPQGIKSFVLTSLRVSGSRLPYKIH 118
Query: 114 NHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYS--VKQKLKQEYL---GLP-G 166
H +G+ + D F V A + H I GY V ++ L E L G+P G
Sbjct: 119 FHEFDQDSLGK--ILETDKFTVYAEELDHTIFCVGYRVMQKDLEGTLDAEKLKAAGVPFG 176
Query: 167 DEIKKLKSS-------GTEITYT--VTTPEVAFTGDTMSDFIVDEANIDV-LRARILVME 216
K+K+ GTEI ++ P + D +A++ + + A +LV E
Sbjct: 177 PLFGKIKNGQDVVLEDGTEINAADYISAPRPGKIITILGDTRKTDASVRLGVNADVLVHE 236
Query: 217 STYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
STY + AR++GH+ + + A + K +LL H SAR +I +
Sbjct: 237 STYGKGDEKI--ARNHGHSTNMQAAQVAVEAGAKRLLLNHISARFLSKDISK 286
>gi|300931381|ref|ZP_07146710.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|386614883|ref|YP_006134549.1| ribonuclease Z [Escherichia coli UMNK88]
gi|387507656|ref|YP_006159912.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|419076281|ref|ZP_13621799.1| ribonuclease Z [Escherichia coli DEC3F]
gi|419115608|ref|ZP_13660625.1| ribonuclease Z [Escherichia coli DEC5A]
gi|419121236|ref|ZP_13666192.1| ribonuclease Z [Escherichia coli DEC5B]
gi|419126913|ref|ZP_13671798.1| ribonuclease Z [Escherichia coli DEC5C]
gi|419132293|ref|ZP_13677130.1| ribonuclease Z [Escherichia coli DEC5D]
gi|419137326|ref|ZP_13682122.1| ribonuclease Z [Escherichia coli DEC5E]
gi|420281489|ref|ZP_14783727.1| ribonuclease Z [Escherichia coli TW06591]
gi|425144939|ref|ZP_18544948.1| ribonuclease Z [Escherichia coli 10.0869]
gi|425249987|ref|ZP_18642936.1| ribonuclease Z [Escherichia coli 5905]
gi|425262060|ref|ZP_18654090.1| ribonuclease Z [Escherichia coli EC96038]
gi|425268098|ref|ZP_18659742.1| ribonuclease Z [Escherichia coli 5412]
gi|432450424|ref|ZP_19692689.1| ribonuclease Z [Escherichia coli KTE193]
gi|432486076|ref|ZP_19727991.1| ribonuclease Z [Escherichia coli KTE212]
gi|432627921|ref|ZP_19863897.1| ribonuclease Z [Escherichia coli KTE77]
gi|432671341|ref|ZP_19906870.1| ribonuclease Z [Escherichia coli KTE119]
gi|433034103|ref|ZP_20221819.1| ribonuclease Z [Escherichia coli KTE112]
gi|433174191|ref|ZP_20358716.1| ribonuclease Z [Escherichia coli KTE232]
gi|445013023|ref|ZP_21329141.1| ribonuclease Z [Escherichia coli PA48]
gi|300460751|gb|EFK24244.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|332344052|gb|AEE57386.1| ribonuclease Z [Escherichia coli UMNK88]
gi|374359650|gb|AEZ41357.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|377921322|gb|EHU85321.1| ribonuclease Z [Escherichia coli DEC3F]
gi|377960202|gb|EHV23686.1| ribonuclease Z [Escherichia coli DEC5A]
gi|377966460|gb|EHV29871.1| ribonuclease Z [Escherichia coli DEC5B]
gi|377975025|gb|EHV38350.1| ribonuclease Z [Escherichia coli DEC5C]
gi|377975256|gb|EHV38577.1| ribonuclease Z [Escherichia coli DEC5D]
gi|377984319|gb|EHV47554.1| ribonuclease Z [Escherichia coli DEC5E]
gi|390781776|gb|EIO49453.1| ribonuclease Z [Escherichia coli TW06591]
gi|408163845|gb|EKH91692.1| ribonuclease Z [Escherichia coli 5905]
gi|408180727|gb|EKI07332.1| ribonuclease Z [Escherichia coli EC96038]
gi|408182740|gb|EKI09224.1| ribonuclease Z [Escherichia coli 5412]
gi|408591660|gb|EKK66081.1| ribonuclease Z [Escherichia coli 10.0869]
gi|430979814|gb|ELC96579.1| ribonuclease Z [Escherichia coli KTE193]
gi|431015285|gb|ELD28840.1| ribonuclease Z [Escherichia coli KTE212]
gi|431162532|gb|ELE62973.1| ribonuclease Z [Escherichia coli KTE77]
gi|431210260|gb|ELF08322.1| ribonuclease Z [Escherichia coli KTE119]
gi|431551109|gb|ELI25096.1| ribonuclease Z [Escherichia coli KTE112]
gi|431691935|gb|ELJ57380.1| ribonuclease Z [Escherichia coli KTE232]
gi|444624665|gb|ELV98547.1| ribonuclease Z [Escherichia coli PA48]
Length = 305
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|294501160|ref|YP_003564860.1| ribonuclease Z [Bacillus megaterium QM B1551]
gi|294351097|gb|ADE71426.1| ribonuclease Z [Bacillus megaterium QM B1551]
Length = 309
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 30/238 (12%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKP-PTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP ++ +R + T+ P IKE +E V + L
Sbjct: 59 IFITHLHGDHIYGLPGFLGSRSFQGGESLLTVYGPKGIKEFIEVTLAVSQTHLQYPLEIV 118
Query: 117 LVGLDVGEEFCMRKDLFVKAF-KTYHVIQSQGYVVYSVK-------QKLKQEYLGLPGDE 168
+ + + F F K H I S GY V Q+LK+ + PG
Sbjct: 119 EIEEESESGTIFEDETFSVEFGKLEHGILSYGYRVVEKDLPGSLDVQRLKELNIP-PGPH 177
Query: 169 IKKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILV 214
++LK G E+ V P+ + GDT ++ + A +LV
Sbjct: 178 YQQLK-EGKEVVLKDGRLINGQEFVGEPKKGKVITVLGDTRKCM---QSVQLAMHANVLV 233
Query: 215 MESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDA 272
E+T+ E A +Y H+ E E A+ + ++L H S+R++ D + R +
Sbjct: 234 HEATFAAGDE--ELAYNYFHSTAKEAAEIAKTASAERLILSHISSRYQGDAVSRLAEG 289
>gi|254852872|ref|ZP_05242220.1| metallo-beta-lactamase [Listeria monocytogenes FSL R2-503]
gi|300763718|ref|ZP_07073715.1| metallo-beta-lactamase [Listeria monocytogenes FSL N1-017]
gi|258606206|gb|EEW18814.1| metallo-beta-lactamase [Listeria monocytogenes FSL R2-503]
gi|300515454|gb|EFK42504.1| metallo-beta-lactamase [Listeria monocytogenes FSL N1-017]
Length = 306
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R TI P+ I E VE R+ + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVETSL----RLSGTRLTYK 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ-KLKQEYLGLPGDE----I 169
+ ++ ++F V A H ++S GY +V KQ L E L G E
Sbjct: 115 INFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGPVF 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK +G +T + P+ ++ GDT +E + L A ILV
Sbjct: 175 QKLK-NGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKE--TANELEL-ALNADILVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ D + A +Y H+ + + A+ K ++L H S+R+ D
Sbjct: 231 EATFEGDK--AKMAGEYMHSTTLQAAKLAKTANVKKLILTHISSRYDRD 277
>gi|161986495|ref|YP_311209.2| ribonuclease Z [Shigella sonnei Ss046]
gi|383179242|ref|YP_005457247.1| ribonuclease Z [Shigella sonnei 53G]
gi|414576888|ref|ZP_11434070.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|420364332|ref|ZP_14865215.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|432948143|ref|ZP_20143299.1| ribonuclease Z [Escherichia coli KTE196]
gi|391284641|gb|EIQ43236.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|391293995|gb|EIQ52254.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|431458121|gb|ELH38458.1| ribonuclease Z [Escherichia coli KTE196]
Length = 305
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|116873412|ref|YP_850193.1| metallo-beta-lactamase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466485|sp|A0AK82.1|RNZ_LISW6 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116742290|emb|CAK21414.1| metallo-beta-lactamase family protein [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 306
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV--PSCIKEDVEQLFEVHRRMDHSELNH 115
+FI+H H DHI GLP +++R ++ TI + P+ I E VE R+ + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRS-FQGGDSTITIYGPAGIAEYVETSL----RLSGTRLTY 113
Query: 116 TLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ-KLKQEYLGLPGDE---- 168
++ ++ +F V A H ++S GY +V KQ L E L G E
Sbjct: 114 KIIFNEIEPGLIFEDKMFSVIADDLEHGVRSFGYRIVEKDKQGALNAEKLKAEGIEAGPI 173
Query: 169 IKKLKSSGT---------EITYTVTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK+ + + P+ ++ GDT E + L A ILV
Sbjct: 174 FQKLKNGEVVELEDGRVVDGKNYIGEPQKGKIISIFGDTKE--TASELEL-ALNADILVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ D + A +Y H+ + A+K K ++L H S+R+ D
Sbjct: 231 EATFEGDKGKM--AGEYMHSTTLQAANLAKKANVKKLILTHISSRYDRD 277
>gi|417718164|ref|ZP_12367063.1| ribonuclease Z [Shigella flexneri K-227]
gi|333016780|gb|EGK36108.1| ribonuclease Z [Shigella flexneri K-227]
Length = 283
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 93
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 94 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 153
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 154 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 209
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 210 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 253
>gi|332236758|ref|XP_003267566.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1
[Nomascus leucogenys]
gi|332236760|ref|XP_003267567.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2
[Nomascus leucogenys]
Length = 363
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 71/275 (25%)
Query: 58 LFISHAHMDHIGGLPMYVAT----RGLYRMKPPTII------------------------ 89
+FI+H H DH GLP + T G K P I
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 90 ------VPS---CIKEDVEQLFEVHR--RMDHSELNHTLVGLDVGEEFCMRKD---LFVK 135
VP+ C E+++ V+R E T++ LD E + D VK
Sbjct: 118 YVVHELVPTADQCPAEELKGFAHVNRADSPPKEEQGRTIL-LDSEENSYLLFDDEQFVVK 176
Query: 136 AFKTYHVIQSQGYVVYSVK-------QKLKQEYLGLP-GDEIKKLKS-------SGTEIT 180
AF+ +H I S G+ V K QKLK LG+P G KLK+ +G I+
Sbjct: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKD--LGVPPGPAYGKLKNGISVVLENGVTIS 234
Query: 181 ------YTVTTPEVAFTGDTMSDFIVDEANIDV-LRARILVMESTYVDDSTTVEQARDYG 233
+ ++ GD +V + I + A +L+ E+T D +++A+++G
Sbjct: 235 PQDVLKKPIVGRKICILGDCSG--VVGDGGIKLCFEADLLIHEATL--DDAQMDKAKEHG 290
Query: 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRR 268
H+ +A+ K ++L HFS R+K + R
Sbjct: 291 HSTPQMAATFAKLCHAKRLVLTHFSQRYKPVALAR 325
>gi|283768806|ref|ZP_06341717.1| putative ribonuclease Z [Bulleidia extructa W1219]
gi|283104592|gb|EFC05965.1| putative ribonuclease Z [Bulleidia extructa W1219]
Length = 303
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 29/220 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGL-YRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ ++H H DH GLP + T R++P I P +KE ++ + + R + E+N
Sbjct: 57 IILTHYHADHTAGLPGLLLTMAKNNRLEPIRIYGPKGLKEVIQGVTLLARFIPF-EVN-- 113
Query: 117 LVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKL-----KQEYLGLPGDEIKK 171
+ +D F + ++L V+AF H ++ GY + +K+K K + L LP K
Sbjct: 114 CIEIDGHSVFSL-EELQVQAFPLIHSVECLGY-RFDLKRKPKFLVEKAKALNLPVQYWSK 171
Query: 172 LKSS------GTEITYTVTTPE------VAFTGDTM-SDFIVDEANIDVLRARILVMEST 218
L+ G EI + + + DT + +V +A L+A +L+ E
Sbjct: 172 LQKGETVLFEGKEILPSAVLGNERKGISLVYATDTRPTSSLVRQA----LQADLLIAEGM 227
Query: 219 YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258
Y D +E A+ H + E + A+K K + L H+S
Sbjct: 228 Y-GDVEKIENAQMNKHMMMQEACDIAQKCGVKDLWLTHYS 266
>gi|415844452|ref|ZP_11524194.1| ribonuclease Z [Shigella sonnei 53G]
gi|418266674|ref|ZP_12886155.1| ribonuclease Z [Shigella sonnei str. Moseley]
gi|420359352|ref|ZP_14860326.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|323168564|gb|EFZ54244.1| ribonuclease Z [Shigella sonnei 53G]
gi|391282033|gb|EIQ40670.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|397899499|gb|EJL15873.1| ribonuclease Z [Shigella sonnei str. Moseley]
Length = 294
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 104
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 105 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 164
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 165 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 220
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 221 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 264
>gi|444305701|ref|ZP_21141480.1| ribonuclease Z [Arthrobacter sp. SJCon]
gi|443482031|gb|ELT44947.1| ribonuclease Z [Arthrobacter sp. SJCon]
Length = 320
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 29/221 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTL 117
+ ++H H DH GLP ++ L ++ P + EDV + ++ +
Sbjct: 62 ICLTHVHGDHCYGLPGVLSRLALDGVRHPVHLHYPAAGEDVVRAL----------VSISS 111
Query: 118 VGLDV-----GEEFCMRKDLFVKAFKTYHVIQSQGY-VVYSVKQKLKQEYL---GLPGDE 168
G+D+ G+ + L V+ K H I + GY +V + L + L G+ G +
Sbjct: 112 PGIDLRLHPHGKAGIIADGLEVRPLK--HRIDTFGYRLVEPDGRTLLPDRLAAAGIAGPD 169
Query: 169 IKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-----ARILVMESTYVDDS 223
+ +L+ GT + + G + F++D A A +LV EST+ DD
Sbjct: 170 VGRLQREGTLNGVNLEAVSIHRPGQRFA-FVMDTAPCAGAEELADGADLLVAESTFSDDD 228
Query: 224 TTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ Q Y H + E A +A++L HFS+R+ D
Sbjct: 229 AGLAQ--QYRHLTAGQAGELASHAGARALVLTHFSSRYGDD 267
>gi|418041824|ref|ZP_12680038.1| ribonuclease Z [Escherichia coli W26]
gi|383475227|gb|EID67192.1| ribonuclease Z [Escherichia coli W26]
Length = 270
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 25 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 80
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 81 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 140
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 141 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 196
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 197 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 240
>gi|300958961|ref|ZP_07171063.1| ribonuclease Z [Escherichia coli MS 175-1]
gi|300314413|gb|EFJ64197.1| ribonuclease Z [Escherichia coli MS 175-1]
Length = 305
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHRDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|293415562|ref|ZP_06658205.1| ribonuclease Z [Escherichia coli B185]
gi|291433210|gb|EFF06189.1| ribonuclease Z [Escherichia coli B185]
Length = 311
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE R+ S ++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETAL----RISGSWTDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|288934267|ref|YP_003438326.1| ribonuclease Z [Klebsiella variicola At-22]
gi|288888996|gb|ADC57314.1| ribonuclease Z [Klebsiella variicola At-22]
Length = 306
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 30/239 (12%)
Query: 47 RCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEVH 105
R P N +FI+H H DH+ GLP + +R + P T+ P +KE VE
Sbjct: 49 RTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETAL--- 105
Query: 106 RRMDHSELNHTLVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGL 164
R+ S ++ L ++VG ++ + V A+ H ++ GY + + + L
Sbjct: 106 -RLSGSWTDYPLTIIEVGPGLVFDEEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQL 164
Query: 165 ------PGDEIKKLK-------SSGTEITYT----VTTP--EVAFTGDTMSDFIVDEANI 205
PG +LK G I + TP +A GDT +A
Sbjct: 165 IADGVRPGPLFHQLKLGQRVELEDGRVIDGSRYLGPATPGKTLAIFGDTAP---CPQALE 221
Query: 206 DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
A ++V E+T + E+A GH+ + A++ ++ HFS+R+ +
Sbjct: 222 MARGADVMVHETTL--EQAMAEKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|220912820|ref|YP_002488129.1| ribonuclease Z [Arthrobacter chlorophenolicus A6]
gi|219859698|gb|ACL40040.1| Ribonuclease Z [Arthrobacter chlorophenolicus A6]
Length = 298
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPT-IIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+ ++H H DH GLP ++ L + P + P+ ++ V L V +
Sbjct: 57 ICLTHVHGDHCFGLPGVLSRMVLDGVNHPVHLHYPAAGEDVVRALVSV-----------S 105
Query: 117 LVGLDV-----GEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYL----GLPGD 167
GLD+ G + L ++ K H I++ GY + + +L G+ G
Sbjct: 106 TPGLDLKLHPHGAAGEVADGLHIRPLK--HRIETYGYRLTEPGGRTFLPHLLAAAGIAGP 163
Query: 168 EIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLR-----ARILVMESTYVDD 222
++ +L+ G + V G + F++D A D A +LV EST+ DD
Sbjct: 164 DVGRLRREGALAGVGLADVSVPRPGQRFA-FVMDTAPCDGAEDLADGADLLVAESTFSDD 222
Query: 223 STTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
+ A +Y H + + A + + ++L HFS+R+ D
Sbjct: 223 DGGL--AGEYRHLTAGQAGDLAGRGSVRTLVLTHFSSRYGND 262
>gi|448320845|ref|ZP_21510330.1| ribonuclease Z [Natronococcus amylolyticus DSM 10524]
gi|445605272|gb|ELY59202.1| ribonuclease Z [Natronococcus amylolyticus DSM 10524]
Length = 308
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+F++H H DH+ G+P + T R I P + ++E L H+ N
Sbjct: 57 IFVTHLHGDHVLGIPGLIQTMDFNDREDALAIHGPRGTRRELESLV-------HALGNRP 109
Query: 117 LVGLDVGE----EFCMRKDLF-VKAFKTYHVIQSQGYVVYSVKQK-----LKQEYLGLP- 165
+ + E + R D F V+AF T H +S GY + +K + E LG+P
Sbjct: 110 SFPVRISEVGDGDVAYRADEFEVRAFATDHDTRSVGYALVEDDRKGRFDRERAEELGVPV 169
Query: 166 GDEIKKL-KSSGTEI-TYTVTTPE-----------VAFTGDTMSDFIVDEANIDVLRARI 212
G + +L + E+ TV PE + +TGDT EA D +
Sbjct: 170 GPKFSRLHEGESVELEDGTVVDPEQVVGDPRPGRAIVYTGDTRPTAATIEAADD---PDL 226
Query: 213 LVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
L+ ++T+ ++A D H+ + E A + K + L+H S+R+ D
Sbjct: 227 LIHDATFA--DDRADRAADTAHSTARQAAEIANRAGAKRLALMHLSSRYAGD 276
>gi|291283514|ref|YP_003500332.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|331653711|ref|ZP_08354712.1| ribonuclease Z [Escherichia coli M718]
gi|416775553|ref|ZP_11874393.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|416787213|ref|ZP_11879301.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|416798869|ref|ZP_11884218.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|416809240|ref|ZP_11888903.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97]
gi|416819772|ref|ZP_11893462.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|416830676|ref|ZP_11898749.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|421774460|ref|ZP_16211072.1| ribonuclease Z [Escherichia coli AD30]
gi|209765218|gb|ACI80921.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765224|gb|ACI80924.1| hypothetical protein ECs3156 [Escherichia coli]
gi|290763387|gb|ADD57348.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|320641098|gb|EFX10577.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|320646486|gb|EFX15405.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|320651583|gb|EFX19963.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|320657335|gb|EFX25137.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663037|gb|EFX30354.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|320667854|gb|EFX34762.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|331048560|gb|EGI20636.1| ribonuclease Z [Escherichia coli M718]
gi|408460208|gb|EKJ83987.1| ribonuclease Z [Escherichia coli AD30]
Length = 311
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|433043847|ref|ZP_20231342.1| ribonuclease Z [Escherichia coli KTE117]
gi|73856267|gb|AAZ88974.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|431555685|gb|ELI29524.1| ribonuclease Z [Escherichia coli KTE117]
Length = 311
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 121
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 122 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 181
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 182 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 237
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 238 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 281
>gi|419887743|ref|ZP_14408306.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
gi|388362154|gb|EIL26194.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
Length = 283
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 93
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 94 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 153
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 154 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 209
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 210 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 253
>gi|417629533|ref|ZP_12279770.1| ribonuclease Z [Escherichia coli STEC_MHI813]
gi|345372280|gb|EGX04244.1| ribonuclease Z [Escherichia coli STEC_MHI813]
Length = 305
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + + +P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|417613744|ref|ZP_12264202.1| ribonuclease Z [Escherichia coli STEC_EH250]
gi|345361938|gb|EGW94095.1| ribonuclease Z [Escherichia coli STEC_EH250]
Length = 305
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH+ GLP + +R + ++P TI P I+E VE R+ S ++
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RISGSWTDYP 115
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGYVV--YSVKQKLKQEYLGL----PGDEI 169
L +++G + L V A+ H ++ GY + + L + L PG
Sbjct: 116 LEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLF 175
Query: 170 KKLKSSGT-------------EITYTVTTPEVAFTGDTMSDFIVDEANIDVLRA-RILVM 215
++LK+ T + V +A GDT +A +D+ + ++V
Sbjct: 176 QELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP----CDAALDLAKGVDVMVH 231
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARH 261
E+T D T +A GH+ + A + +++ H S+R+
Sbjct: 232 EATL--DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY 275
>gi|422416499|ref|ZP_16493456.1| ribonuclease Z [Listeria innocua FSL J1-023]
gi|313623068|gb|EFR93349.1| ribonuclease Z [Listeria innocua FSL J1-023]
Length = 306
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R TI P+ I E VE R+ + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSL----RLSGTRLTYK 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ-KLKQEYLGLPGDE----I 169
+ ++ ++F V A H ++S GY +V KQ L E L G E
Sbjct: 115 INFEEIEPGVIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGPVF 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK +G +T + P+ V+ GDT V E + L A ILV
Sbjct: 175 QKLK-NGEIVTLADGRVIDGKNYIGEPQKGKIVSIFGDTRE--TVSELEL-ALNADILVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ D + A +Y H+ + A+ K ++L H S+R+ D
Sbjct: 231 EATFEGDK--AKMAGEYMHSTTLQAATLAKAANVKKLILTHISSRYDRD 277
>gi|386859992|ref|YP_006272698.1| Ribonuclease Z [Borrelia crocidurae str. Achema]
gi|384934873|gb|AFI31546.1| Ribonuclease Z [Borrelia crocidurae str. Achema]
Length = 319
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 35/255 (13%)
Query: 41 LAFDIGRCPSRALSQN--------FLFISHAHMDHIGGL---PMYVATRGLYRMKPPTII 89
+ FD G +L + + I+H H DHI GL M +A G R +P TII
Sbjct: 33 ILFDCGEATQMSLRKQKISWQKIKMICITHLHADHITGLLGIVMLMAQSGDTRKEPLTII 92
Query: 90 VPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR-KDLFVKAFKTYHVIQSQGY 148
P IK+ +E E+ R + ++ + + + E K ++ K H I GY
Sbjct: 93 GPIGIKKYLETNIELLRVHKNYKIIYKEIITNKTEPILYEDKRKRIEYIKLKHSIDCIGY 152
Query: 149 VVYSVKQ-----KLKQEYLGLPGDEIKKLKSSGTEITYT---VTTPEV----------AF 190
+ + K E L +P I+K G E+ + E+ A+
Sbjct: 153 LFIEKDKPGKFDTQKAESLNIPKGPIRKKLQEGYEVMLNGKKIVPSEILGEIKKGLKFAY 212
Query: 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK 250
DT +E + + ++++EST+ DD E+A+ H + +K +
Sbjct: 213 ITDTAY---FEELSTYIQNFNLVIIESTFKDDLK--EEAKKKLHLTAKLAAQITKKAKVY 267
Query: 251 AILLIHFSARHKVDE 265
LIHFS R+ +++
Sbjct: 268 QTGLIHFSERYTLNK 282
>gi|345882988|ref|ZP_08834439.1| ribonuclease Z [Prevotella sp. C561]
gi|345044200|gb|EGW48244.1| ribonuclease Z [Prevotella sp. C561]
Length = 304
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLY-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FISH H DH GLP ++T G+ R P I P+ + ++Q E
Sbjct: 59 VFISHLHGDHCFGLPGMISTFGMTGRTAPLHIYAPAAFEPILDQTLSFF--CQGLEFKVV 116
Query: 117 LVGLDVGEEFCMRKD--LFVKAFKTYHVIQSQGYVVYSVKQKLKQ------EYLGLPGDE 168
+D + + +D L V+ H I GY ++ K L ++ +P +
Sbjct: 117 FHAVDTTQNKVVYEDRSLTVETIPLQHRIDCCGY-LFREKPILPHIRRDMIDFYKIPISQ 175
Query: 169 IKKLKSSGTEIT--------YTVTTP-----EVAFTGDTMSDFIVDEANIDVLRARILVM 215
I +K+ +T +TTP A+ DT + E V L
Sbjct: 176 INNIKAGADWVTPEGEVIANSRLTTPAEPARSYAYCSDTRYIKTLHEL---VKGVSTLYH 232
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262
ESTY + E+AR Y H+ + + A +LL HFSAR+
Sbjct: 233 ESTY--SAEDAERARLYWHSTSQDAAKVARDASVGKLLLGHFSARYN 277
>gi|46908204|ref|YP_014593.1| metallo-beta-lactamase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093300|ref|ZP_00231070.1| metallo-beta-lactamase family protein [Listeria monocytogenes str.
4b H7858]
gi|226224575|ref|YP_002758682.1| hypothetical protein Lm4b_01989 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825533|ref|ZP_05230534.1| ribonuclease Z [Listeria monocytogenes FSL J1-194]
gi|254931857|ref|ZP_05265216.1| ribonuclease Z [Listeria monocytogenes HPB2262]
gi|386732712|ref|YP_006206208.1| ribonuclease Z [Listeria monocytogenes 07PF0776]
gi|417315614|ref|ZP_12102290.1| ribonuclease Z [Listeria monocytogenes J1816]
gi|424823731|ref|ZP_18248744.1| Ribonuclease Z [Listeria monocytogenes str. Scott A]
gi|56749436|sp|Q71Y44.1|RNZ_LISMF RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494137|sp|C1KWS1.1|RNZ_LISMC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|46881474|gb|AAT04770.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018320|gb|EAL09083.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877037|emb|CAS05746.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293583409|gb|EFF95441.1| ribonuclease Z [Listeria monocytogenes HPB2262]
gi|293594775|gb|EFG02536.1| ribonuclease Z [Listeria monocytogenes FSL J1-194]
gi|328466318|gb|EGF37475.1| ribonuclease Z [Listeria monocytogenes J1816]
gi|332312411|gb|EGJ25506.1| Ribonuclease Z [Listeria monocytogenes str. Scott A]
gi|384391470|gb|AFH80540.1| ribonuclease Z [Listeria monocytogenes 07PF0776]
Length = 306
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 32/229 (13%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPP-TIIVPSCIKEDVEQLFEVHRRMDHSELNHT 116
+FI+H H DHI GLP +++R TI P+ I E VE R+ + L +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVETSL----RLSGTRLTYK 114
Query: 117 LVGLDVGEEFCMRKDLF-VKAFKTYHVIQSQGY-VVYSVKQ-KLKQEYLGLPGDE----I 169
+ ++ ++F V A H ++S GY +V KQ L E L G E
Sbjct: 115 INFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVEAGPVF 174
Query: 170 KKLKSSGTEITYT----------VTTPE----VAFTGDTMSDFIVDEANIDVLRARILVM 215
+KLK +G +T + P+ ++ GDT +E + L A ILV
Sbjct: 175 QKLK-NGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKE--TANELEL-ALNADILVH 230
Query: 216 ESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264
E+T+ D + A +Y H+ + A+ K ++L H S+R+ D
Sbjct: 231 EATFEGDK--AKMAGEYMHSTTLQAANLAKTANVKKLILTHISSRYDRD 277
>gi|448736741|ref|ZP_21718828.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
gi|445805838|gb|EMA56034.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
Length = 606
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 58 LFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCI---KEDVEQLFEVHRR 107
+F++HAH+DH GGLP+ A RGL P I P I K +E ++HRR
Sbjct: 88 VFLTHAHIDHSGGLPILEA-RGLLADDAPIIATPPTIEIAKTLLEDSLKIHRR 139
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,413,709,435
Number of Sequences: 23463169
Number of extensions: 178582019
Number of successful extensions: 445827
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 1651
Number of HSP's that attempted gapping in prelim test: 444229
Number of HSP's gapped (non-prelim): 2055
length of query: 288
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 147
effective length of database: 9,050,888,538
effective search space: 1330480615086
effective search space used: 1330480615086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)