Query 023022
Match_columns 288
No_of_seqs 169 out of 1830
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02650 RNase_Z_T_toga ribon 100.0 1.3E-39 2.9E-44 281.3 21.6 246 22-276 2-263 (277)
2 TIGR02649 true_RNase_BN ribonu 100.0 3.7E-39 8E-44 288.8 22.5 258 20-287 1-298 (303)
3 TIGR02651 RNase_Z ribonuclease 100.0 4.1E-37 8.9E-42 275.1 23.2 255 20-288 2-295 (299)
4 COG1234 ElaC Metal-dependent h 100.0 8.3E-36 1.8E-40 264.3 21.5 249 19-287 3-286 (292)
5 PRK02126 ribonuclease Z; Provi 100.0 9.2E-34 2E-38 255.4 22.4 231 29-264 16-320 (334)
6 PRK02113 putative hydrolase; P 100.0 3.1E-29 6.7E-34 218.9 20.6 203 30-287 34-247 (252)
7 PRK11244 phnP carbon-phosphoru 100.0 2.1E-28 4.6E-33 213.4 20.9 203 29-288 35-246 (250)
8 PRK00055 ribonuclease Z; Revie 100.0 1.5E-28 3.3E-33 216.3 17.5 226 20-288 4-262 (270)
9 TIGR03307 PhnP phosphonate met 100.0 1.5E-26 3.2E-31 200.4 20.3 203 29-288 25-236 (238)
10 PRK05184 pyrroloquinoline quin 99.9 1.1E-26 2.4E-31 207.4 18.3 195 29-261 37-273 (302)
11 PF12706 Lactamase_B_2: Beta-l 99.9 1.8E-24 3.9E-29 180.9 16.2 174 40-257 2-194 (194)
12 KOG2121 Predicted metal-depend 99.9 1.3E-25 2.8E-30 211.4 6.9 200 29-264 459-693 (746)
13 TIGR02108 PQQ_syn_pqqB coenzym 99.9 8E-24 1.7E-28 188.5 14.8 191 31-261 38-273 (302)
14 TIGR00649 MG423 conserved hypo 99.9 3.7E-22 8E-27 186.6 20.1 191 27-262 12-231 (422)
15 COG1782 Predicted metal-depend 99.9 8.6E-22 1.9E-26 178.5 19.4 227 20-288 183-447 (637)
16 PRK00685 metal-dependent hydro 99.9 8.9E-21 1.9E-25 163.0 18.9 196 20-287 3-223 (228)
17 TIGR03675 arCOG00543 arCOG0054 99.9 2.3E-20 5E-25 180.6 20.2 227 19-287 176-440 (630)
18 PRK04286 hypothetical protein; 99.8 6.4E-20 1.4E-24 163.7 12.9 210 20-268 3-260 (298)
19 COG1236 YSH1 Predicted exonucl 99.8 3.1E-18 6.7E-23 159.5 19.9 223 20-287 3-251 (427)
20 COG0595 mRNA degradation ribon 99.8 2.5E-17 5.3E-22 156.0 17.7 200 15-259 7-236 (555)
21 PF02112 PDEase_II: cAMP phosp 99.7 1.5E-16 3.2E-21 142.4 16.2 238 16-287 2-335 (335)
22 PRK11709 putative L-ascorbate 99.7 1.6E-15 3.4E-20 137.8 20.7 154 54-259 109-285 (355)
23 KOG1136 Predicted cleavage and 99.7 3.8E-16 8.2E-21 135.7 15.5 202 21-264 7-247 (501)
24 COG1235 PhnP Metal-dependent h 99.7 5.5E-16 1.2E-20 136.6 14.9 196 39-269 41-247 (269)
25 smart00849 Lactamase_B Metallo 99.6 5.6E-14 1.2E-18 115.6 13.0 116 29-151 4-133 (183)
26 COG5212 PDE1 Low-affinity cAMP 99.5 1.4E-13 3E-18 116.7 14.3 200 54-287 112-351 (356)
27 KOG1137 mRNA cleavage and poly 99.5 8.4E-14 1.8E-18 127.9 9.4 210 17-266 11-252 (668)
28 PF13483 Lactamase_B_3: Beta-l 99.4 7.4E-13 1.6E-17 108.0 8.9 149 20-256 2-163 (163)
29 TIGR03413 GSH_gloB hydroxyacyl 99.4 1.6E-12 3.4E-17 113.2 11.5 97 31-151 10-117 (248)
30 PRK11921 metallo-beta-lactamas 99.4 3.9E-12 8.5E-17 118.0 12.7 111 27-152 29-154 (394)
31 PLN02469 hydroxyacylglutathion 99.4 7E-12 1.5E-16 109.6 11.8 99 31-151 12-122 (258)
32 PLN02398 hydroxyacylglutathion 99.3 1.4E-11 3E-16 110.6 11.2 99 31-151 87-197 (329)
33 PRK10241 hydroxyacylglutathion 99.3 1.6E-11 3.5E-16 107.0 10.9 98 30-150 12-119 (251)
34 PLN02962 hydroxyacylglutathion 99.3 2.2E-11 4.8E-16 105.8 10.9 113 11-151 7-135 (251)
35 PRK05452 anaerobic nitric oxid 99.3 3.9E-11 8.6E-16 113.7 12.7 113 27-152 31-158 (479)
36 COG2220 Predicted Zn-dependent 99.3 1.1E-09 2.3E-14 96.1 20.5 172 31-258 14-213 (258)
37 PF00753 Lactamase_B: Metallo- 99.2 2.4E-11 5.2E-16 99.9 7.3 50 29-78 4-67 (194)
38 KOG1135 mRNA cleavage and poly 99.1 3.8E-09 8.3E-14 99.9 17.0 165 23-222 7-203 (764)
39 COG0491 GloB Zn-dependent hydr 99.1 1.3E-09 2.8E-14 93.8 12.6 118 29-152 24-159 (252)
40 KOG0813 Glyoxylase [General fu 99.0 4E-09 8.7E-14 90.9 10.5 78 53-152 50-128 (265)
41 COG1237 Metal-dependent hydrol 98.9 2E-08 4.4E-13 85.7 13.4 55 38-96 31-96 (259)
42 KOG1361 Predicted hydrolase in 98.9 7.7E-09 1.7E-13 95.8 9.6 155 54-259 112-272 (481)
43 TIGR00361 ComEC_Rec2 DNA inter 98.9 1.3E-07 2.8E-12 93.5 18.9 150 37-255 458-630 (662)
44 COG2248 Predicted hydrolase (m 98.8 6.7E-08 1.4E-12 81.8 11.5 212 15-260 1-250 (304)
45 COG0426 FpaA Uncharacterized f 98.8 3.8E-08 8.1E-13 89.3 10.1 110 27-151 32-156 (388)
46 PRK11539 ComEC family competen 98.7 4.9E-07 1.1E-11 90.6 16.5 90 37-152 519-629 (755)
47 COG2333 ComEC Predicted hydrol 98.4 9.7E-06 2.1E-10 71.8 15.4 114 38-196 63-193 (293)
48 KOG0814 Glyoxylase [General fu 98.3 2.9E-06 6.4E-11 68.1 8.1 98 31-152 21-132 (237)
49 KOG3798 Predicted Zn-dependent 97.7 0.00029 6.4E-09 60.1 9.4 155 54-259 132-301 (343)
50 PF13691 Lactamase_B_4: tRNase 97.4 0.00015 3.2E-09 48.9 2.9 39 32-70 13-63 (63)
51 PF14597 Lactamase_B_5: Metall 96.8 0.00099 2.2E-08 54.2 2.7 90 38-151 32-128 (199)
52 KOG2121 Predicted metal-depend 96.8 0.0008 1.7E-08 65.3 2.5 148 31-180 65-247 (746)
53 COG2015 Alkyl sulfatase and re 96.6 0.011 2.3E-07 55.2 8.2 75 20-96 118-205 (655)
54 KOG1138 Predicted cleavage and 96.0 0.073 1.6E-06 49.9 10.5 125 55-216 97-265 (653)
55 KOG4736 Uncharacterized conser 90.7 1.2 2.7E-05 39.2 7.5 37 38-74 104-145 (302)
56 PF07521 RMMBL: RNA-metabolisi 85.9 1.2 2.7E-05 27.4 3.3 27 232-258 15-41 (43)
57 KOG3592 Microtubule-associated 85.7 0.47 1E-05 46.5 1.9 46 31-76 50-103 (934)
58 KOG1137 mRNA cleavage and poly 45.1 1.1E+02 0.0024 29.8 7.8 91 14-104 145-258 (668)
59 COG4074 Mth H2-forming N5,N10- 36.1 54 0.0012 28.1 3.8 33 231-263 16-48 (343)
60 PF07522 DRMBL: DNA repair met 34.9 43 0.00092 24.9 2.9 24 233-256 83-106 (110)
61 TIGR01723 hmd_TIGR 5,10-methen 28.9 75 0.0016 28.3 3.7 33 231-263 16-48 (340)
62 COG4359 Uncharacterized conser 28.4 61 0.0013 27.0 2.9 23 186-214 160-182 (220)
63 TIGR00272 DPH2 diphthamide bio 27.9 2E+02 0.0043 27.8 6.7 30 186-215 82-112 (496)
64 TIGR03682 arCOG04112 arCOG0411 25.8 3.4E+02 0.0074 24.3 7.6 28 186-215 29-58 (308)
65 COG0846 SIR2 NAD-dependent pro 24.5 1.2E+02 0.0025 26.5 4.1 67 186-264 159-225 (250)
66 cd01410 SIRT7 SIRT7: Eukaryoti 21.7 1.3E+02 0.0029 25.2 3.9 62 186-260 132-193 (206)
67 PTZ00409 Sir2 (Silent Informat 21.0 2.2E+02 0.0048 25.1 5.2 65 186-262 176-240 (271)
68 PRK15063 isocitrate lyase; Pro 20.6 1.6E+02 0.0036 27.8 4.5 57 205-276 273-338 (428)
No 1
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=100.00 E-value=1.3e-39 Score=281.32 Aligned_cols=246 Identities=18% Similarity=0.180 Sum_probs=201.5
Q ss_pred EEEeeecCceeEEEeCCceEEEe-CCCCCcccc-----CcCEEEEecCChhhhCcHHHHHHHh--CCCCCCCCEEeCCcc
Q 023022 22 VEGLSIAGHETCIIFPSLDLAFD-IGRCPSRAL-----SQNFLFISHAHMDHIGGLPMYVATR--GLYRMKPPTIIVPSC 93 (288)
Q Consensus 22 v~g~~~~~~~s~~~i~~~~iLiD-~G~~~~~~~-----~i~~I~iTH~H~DH~~gl~~ll~~~--~~~~~~~~~i~~p~~ 93 (288)
++|.|.+..+||+.+....+||| +|.++...+ .++.+||||+|.||++|++.++... ...+.+++.||+|++
T Consensus 2 ~~g~s~a~~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 2 IIGFFKAAFFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred ceeeechhheEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 47889999999999999999999 999886543 5999999999999999998776633 333567889999999
Q ss_pred hHHHHHHHHHhhhhcCC-CCCceEEEEcCCCCeEEecC---CeEEEEEEcCCcC---CcceEEEEEeccccchhhcCCCh
Q 023022 94 IKEDVEQLFEVHRRMDH-SELNHTLVGLDVGEEFCMRK---DLFVKAFKTYHVI---QSQGYVVYSVKQKLKQEYLGLPG 166 (288)
Q Consensus 94 ~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~i~~---~~~i~~~~~~H~~---~~~g~~i~~~~~~~~~~~~g~~~ 166 (288)
+.+.++.++.....++. ....+.+.+++.++.+.+.. .+.|+++++.|.+ +|.||.|.+.++|||+++.|+|+
T Consensus 82 ~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~ 161 (277)
T TIGR02650 82 GNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDK 161 (277)
T ss_pred hhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCH
Confidence 88888854444332221 12234556667777777642 3899999999996 89999999999999999999999
Q ss_pred HHHHHHHhcC-ceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHH
Q 023022 167 DEIKKLKSSG-TEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAE 245 (288)
Q Consensus 167 ~~l~~l~~~G-~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~ 245 (288)
.++++|+++| .+++++...++++|+|||.++. ...+.++|+|||||||.+... ...++|++..++++.++
T Consensus 162 ~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~-----~~~a~~adlLIhEaTf~d~~~----~~~~gH~t~~eaa~~A~ 232 (277)
T TIGR02650 162 KEARLLKEEGGDDFTREEHHKILLIIGDDLAAD-----DEEEEGGEELIHECCFFDDAD----DRRKKHAAADDEMEESK 232 (277)
T ss_pred HHHHHHHHhCCccccccccCcEEEEeCCCCCCC-----hHHhcCCCEEEEecccccccc----cccCCCCCHHHHHHHHH
Confidence 9999999876 8899999999999999999852 256789999999999998762 13578999999999999
Q ss_pred HcCCCeEEEEeccCCCChhHHHHHHHhCCCc
Q 023022 246 KFENKAILLIHFSARHKVDEIRRAVDAVPAP 276 (288)
Q Consensus 246 ~~~~~~~~l~H~~~~~~~~~~~~~~~~~~~~ 276 (288)
+.++++++|+||++||..+++.++++++...
T Consensus 233 ~a~vk~LiLtH~Ssry~~~~~~~~~~~~~~~ 263 (277)
T TIGR02650 233 KAAGKKKIILHHISRRIIRILKSIIKKREEE 263 (277)
T ss_pred HcCCCEEEEEeecccccHHHHHHHHHHHHhh
Confidence 9999999999999999887766666555333
No 2
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=3.7e-39 Score=288.79 Aligned_cols=258 Identities=24% Similarity=0.277 Sum_probs=194.9
Q ss_pred eEEEEeee-----cCceeEEEeC------CceEEEeCCCCCcccc--------CcCEEEEecCChhhhCcHHHHHHHhCC
Q 023022 20 YKVEGLSI-----AGHETCIIFP------SLDLAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVATRGL 80 (288)
Q Consensus 20 ~~v~g~~~-----~~~~s~~~i~------~~~iLiD~G~~~~~~~--------~i~~I~iTH~H~DH~~gl~~ll~~~~~ 80 (288)
++|+|.+. ..+++|++++ +..+|||||+++++++ +|++|||||.|+||++|++.|+..+..
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~ 80 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 80 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHh
Confidence 35666542 4678999995 2589999999986542 499999999999999999998865432
Q ss_pred C-CCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEecc--cc
Q 023022 81 Y-RMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ--KL 157 (288)
Q Consensus 81 ~-~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~--~~ 157 (288)
. ..++++||+|+.+.+.++..+..... ....+.+++.+.+++.+.. ++++|+++++.|..+++||+|.+.++ ++
T Consensus 81 ~~~~~~l~Iygp~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~ 157 (303)
T TIGR02649 81 SGIIQPLTIYGPQGIREFVETALRISGS--WTDYPLEIVEIGAGEILDD-GLRKVTAYPLEHPLECYGYRIEEHDKPGAL 157 (303)
T ss_pred cCCCCCeEEEechhHHHHHHHHHHhccc--ccCCceEEEEcCCCceEec-CCeEEEEEEccCccceEEEEEeccCCcCCC
Confidence 2 35688999999998887765543211 1123456788888888887 48999999999999999999987654 33
Q ss_pred ---chhhcCCC-hHHHHHHHhcCceecc--------------eEeCCeEEEecCCCCCccccccccccCCCCEEEEeccc
Q 023022 158 ---KQEYLGLP-GDEIKKLKSSGTEITY--------------TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTY 219 (288)
Q Consensus 158 ---~~~~~g~~-~~~l~~l~~~G~~i~~--------------~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~ 219 (288)
|...+|+| |||+++|++ |..++- ...+++++|+|||++. +.....++++|+|||||||
T Consensus 158 ~~~kl~~lgi~~g~~~~~L~~-g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~---~~~~~~~~~adlLi~Eat~ 233 (303)
T TIGR02649 158 NAQALKAAGVPPGPLFQELKA-GKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC---DAALDLAKGVDVMVHEATL 233 (303)
T ss_pred CHHHHHHCCCCCChHHHHhcC-CCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh---HHHHHHhcCCCEEEEeccC
Confidence 56689996 899999996 554431 1246789999999984 2334567899999999999
Q ss_pred CCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChhHHHHHHHhCCCcccceeeecccC
Q 023022 220 VDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 220 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (288)
.++. .+.+..++|+++++++++++++++++++|+||+++|+.+.+..+.++..+.+. .+.+++||
T Consensus 234 ~~~~--~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-~~~~a~d~ 298 (303)
T TIGR02649 234 DITM--EAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDF 298 (303)
T ss_pred Chhh--HHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-CCEecccc
Confidence 8765 45566889999999999999999999999999999986543333222222221 25788887
No 3
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=4.1e-37 Score=275.08 Aligned_cols=255 Identities=29% Similarity=0.386 Sum_probs=194.3
Q ss_pred eEEEEeeec-----CceeEEEeC--CceEEEeCCCCCcccc--------CcCEEEEecCChhhhCcHHHHHHHhCCC-CC
Q 023022 20 YKVEGLSIA-----GHETCIIFP--SLDLAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVATRGLY-RM 83 (288)
Q Consensus 20 ~~v~g~~~~-----~~~s~~~i~--~~~iLiD~G~~~~~~~--------~i~~I~iTH~H~DH~~gl~~ll~~~~~~-~~ 83 (288)
++|+|.+.+ .+++|++++ +..+|||||+++++++ ++++|||||.|+||++|++.++..+... +.
T Consensus 2 ~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~ 81 (299)
T TIGR02651 2 ITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRK 81 (299)
T ss_pred EEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCC
Confidence 567776533 678888886 5699999999876432 5899999999999999999998765433 34
Q ss_pred CCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCC-eEEecCCeEEEEEEcCCcCCcceEEEEEecc--cc---
Q 023022 84 KPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGE-EFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ--KL--- 157 (288)
Q Consensus 84 ~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~--~~--- 157 (288)
.++.||+|+.+.+.++..+..... ......++.++.+++ .+.. ++++|+++++.|+.+++||+|..++. ++
T Consensus 82 ~~i~Iy~p~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~ 158 (299)
T TIGR02651 82 EPLTIYGPPGIKEFIETSLRVSYT--YLNYPIKIHEIEEGGLVFED-DGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDRE 158 (299)
T ss_pred ceEEEECCccHHHHHHHHHHHccc--CCCceEEEEEccCCCceEec-CCEEEEEEEcCCCCceEEEEEEECCCCCCcCHH
Confidence 578999999998887765543221 112345678888887 5877 59999999999999999999998754 34
Q ss_pred chhhcCCC-hHHHHHHHhcCceec--------------ceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCC
Q 023022 158 KQEYLGLP-GDEIKKLKSSGTEIT--------------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDD 222 (288)
Q Consensus 158 ~~~~~g~~-~~~l~~l~~~G~~i~--------------~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~ 222 (288)
|.+..|+| |+++++||+ |+.++ ....+++++|+|||.+. +.....++++|+||+||+|.+.
T Consensus 159 k~~~~~l~~g~~~~~L~~-g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~---~~~~~~~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 159 KAKELGIPPGPLYGKLKR-GETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPC---EEVIEFAKNADLLIHEATFLDE 234 (299)
T ss_pred HHHHCCCCcchhHHHhhC-CCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCCh---HHHHHHHcCCCEEEEECCCCch
Confidence 55689998 999999996 65443 11125689999999984 2233567899999999999986
Q ss_pred CCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChh-HHHH-HHHhCCCcccceeeecccCC
Q 023022 223 STTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD-EIRR-AVDAVPAPLAGRVFALTEGF 288 (288)
Q Consensus 223 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~g~ 288 (288)
. .+.+..++|++++++++++++.++++++|+||+++|... ++.+ ..+.++ .|.+|.||.
T Consensus 235 ~--~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~-----~~~~a~dg~ 295 (299)
T TIGR02651 235 D--KKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFP-----NTYIAEDFM 295 (299)
T ss_pred h--HHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCC-----CcEEccCcc
Confidence 5 345667899999999999999999999999999998642 2322 223332 578888874
No 4
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=264.35 Aligned_cols=249 Identities=28% Similarity=0.365 Sum_probs=188.0
Q ss_pred ceEEEEeeec-----CceeEEEeC--CceEEEeCCCCCcccc--------CcCEEEEecCChhhhCcHHHHHHHhCCCC-
Q 023022 19 GYKVEGLSIA-----GHETCIIFP--SLDLAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVATRGLYR- 82 (288)
Q Consensus 19 ~~~v~g~~~~-----~~~s~~~i~--~~~iLiD~G~~~~~~~--------~i~~I~iTH~H~DH~~gl~~ll~~~~~~~- 82 (288)
.++|+|.+.+ .|.++++++ +..+|||||+++++++ +|++|||||.|.||+.||+.|+..+.+..
T Consensus 3 ~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~ 82 (292)
T COG1234 3 EITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGR 82 (292)
T ss_pred EEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCC
Confidence 3677887655 667888876 5799999999997653 58999999999999999999998776653
Q ss_pred CCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEeccc--cch-
Q 023022 83 MKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQK--LKQ- 159 (288)
Q Consensus 83 ~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~~--~~~- 159 (288)
..++.||+|++..+++...+..... ...+++..+.+.. +.+.+....+.|..++.+|.+.++++. +.+
T Consensus 83 ~~~l~iygP~g~~~~~~~~~~~~~~--~~~~~i~~~e~~~-------~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~ 153 (292)
T COG1234 83 REPLKIYGPPGIKEFVETSLRLSYS--KLTYEIIGHEIEE-------DAFEVEALELDHGVPALGYRIEEPDRPGRFDAE 153 (292)
T ss_pred CCceeEECCcchhhhhhhhhhhccc--ccceEEEEEEecc-------CceEEEEEecCCCccccceeeecCCCcCcCCHH
Confidence 4478999999999888765543211 1112223333322 478999999999999999999988553 221
Q ss_pred -hhcCCC-hHHHHHHHhcCce-----ec------ceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcH
Q 023022 160 -EYLGLP-GDEIKKLKSSGTE-----IT------YTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTV 226 (288)
Q Consensus 160 -~~~g~~-~~~l~~l~~~G~~-----i~------~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~ 226 (288)
.. |++ ++++++|+. +.. ++ ....+.+|+|+|||+++ +.....++++|+|||||||.+.. .
T Consensus 154 ~~~-~~~~g~~~~~l~~-~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~---~~~~~~a~~aDlLiHEat~~~~~--~ 226 (292)
T COG1234 154 KLK-GLPPGPLITALKA-GHPVEERVITPADRIGEPRKGKSVVYSGDTRPC---DELIDLAKGADLLIHEATFEDDL--E 226 (292)
T ss_pred Hhc-CCCCchHHHHHhC-CCceeeeecCHHHhccccCCCcEEEEECCCCCC---HHHHHHhcCCCEEEEeccCCchh--h
Confidence 22 887 899999996 332 22 23456799999999995 34456779999999999999876 3
Q ss_pred HHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCC--hhHHH-HHHHhCCCcccceeeecccC
Q 023022 227 EQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK--VDEIR-RAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 227 ~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~g 287 (288)
+.+...+|++.+||+++|+++++|+++||||++||+ .++++ ++.+.+++ ++.++.||
T Consensus 227 ~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~~f~~----~~~~a~D~ 286 (292)
T COG1234 227 DLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARAIFPG----ETIVARDG 286 (292)
T ss_pred hHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccccchHHHHHHHHHHhCCC----ceEEeccc
Confidence 345566699999999999999999999999999995 44443 44566666 67777776
No 5
>PRK02126 ribonuclease Z; Provisional
Probab=100.00 E-value=9.2e-34 Score=255.40 Aligned_cols=231 Identities=21% Similarity=0.229 Sum_probs=168.4
Q ss_pred CceeEEEeC--CceEEEeCCCCCcc-----ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHH
Q 023022 29 GHETCIIFP--SLDLAFDIGRCPSR-----ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL 101 (288)
Q Consensus 29 ~~~s~~~i~--~~~iLiD~G~~~~~-----~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~ 101 (288)
.|..++... +..+|||||+ ..+ ..+|++||+||.|+||++|++.|+.... .+..++.||+|+.+.+.+...
T Consensus 16 dn~~~l~~~~~~~~iLiD~G~-~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~-~r~~~l~iygp~~~~~~l~~~ 93 (334)
T PRK02126 16 DPGLYVDFLFERRALLFDLGD-LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCL-GRPRRLRLFGPPGFADQVEHK 93 (334)
T ss_pred CcEEEEEECCCCeEEEEcCCC-HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhc-cCCCCeEEEECHHHHHHHHHH
Confidence 344444433 4689999998 322 1369999999999999999999986432 345688999999999999877
Q ss_pred HHhhhhcCC--CCCceEE--EEc--------------------------CCCCeEEecCCeEEEEEEcCCcCCcceEEEE
Q 023022 102 FEVHRRMDH--SELNHTL--VGL--------------------------DVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151 (288)
Q Consensus 102 ~~~~~~~~~--~~~~~~~--~~l--------------------------~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~ 151 (288)
+..+.+... ....+.+ ..+ .++..+.. ++++|+++++.|++||+||+|+
T Consensus 94 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~a~~~~H~vp~~gy~~~ 172 (334)
T PRK02126 94 LAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE-PWFRVRAAFLDHGIPCLAFALE 172 (334)
T ss_pred hccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC-CCEEEEEEEccCCCceeEEEEE
Confidence 753321100 0111222 111 12334555 5999999999999999999999
Q ss_pred Eecc-cc---chhhcCCC-hHHHHHHHhc-------Cceecc------------------------eEeCCeEEEecCCC
Q 023022 152 SVKQ-KL---KQEYLGLP-GDEIKKLKSS-------GTEITY------------------------TVTTPEVAFTGDTM 195 (288)
Q Consensus 152 ~~~~-~~---~~~~~g~~-~~~l~~l~~~-------G~~i~~------------------------~~~~~~i~y~gD~~ 195 (288)
++++ ++ |...+|+| |||+++||.. |..++- ...+.+++|+|||+
T Consensus 173 e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~ 252 (334)
T PRK02126 173 EKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIG 252 (334)
T ss_pred ecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCC
Confidence 8765 34 55689997 8999999962 122221 12467899999999
Q ss_pred CCc-cccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChh
Q 023022 196 SDF-IVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264 (288)
Q Consensus 196 ~~~-~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~ 264 (288)
+.+ ........++++|+||+||+|.++. ...+..++|++++++.+++++.++++++|+|++++|..+
T Consensus 253 ~~~~~~~~l~~~a~~aDlLI~Eat~~~~~--~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~ 320 (334)
T PRK02126 253 YTEENLARIVELAAGVDLLFIEAVFLDED--AEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGR 320 (334)
T ss_pred CCcccHHHHHHHHcCCCEEEEEcccChHH--hhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCc
Confidence 842 1122345678999999999999765 345667899999999999999999999999999998654
No 6
>PRK02113 putative hydrolase; Provisional
Probab=99.97 E-value=3.1e-29 Score=218.94 Aligned_cols=203 Identities=19% Similarity=0.254 Sum_probs=152.2
Q ss_pred ceeEEEeC--CceEEEeCCCCCccc------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHH
Q 023022 30 HETCIIFP--SLDLAFDIGRCPSRA------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL 101 (288)
Q Consensus 30 ~~s~~~i~--~~~iLiD~G~~~~~~------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~ 101 (288)
+.++++++ +..+|||||++...+ .++|+|||||.|.||++|++.+.... ...+++||+|+.+.+.+...
T Consensus 34 ~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~---~~~~~~i~~~~~~~~~l~~~ 110 (252)
T PRK02113 34 LRTSALVETEGARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFC---RFGEVPIYAEQYVAERLRSR 110 (252)
T ss_pred eeeEEEEEECCeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhc---cCCCceEEECHHHHHHHHhh
Confidence 45777775 568999999986543 26999999999999999999886422 34678999999887777654
Q ss_pred HHhhhhc-CCCCC-ceEEEEcCCCCeEEecCCeEEEEEEcCCc-CCcceEEEEEeccccchhhcCCChHHHHHHHhcCce
Q 023022 102 FEVHRRM-DHSEL-NHTLVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTE 178 (288)
Q Consensus 102 ~~~~~~~-~~~~~-~~~~~~l~~g~~~~i~~~~~i~~~~~~H~-~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~ 178 (288)
....... ..... ..+++.+++|+++.++ +++|+++++.|+ .+++||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~H~~~~~~gy~i---------------------------- 161 (252)
T PRK02113 111 MPYCFVEHSYPGVPNIPLREIEPDRPFLVN-HTEVTPLRVMHGKLPILGYRI---------------------------- 161 (252)
T ss_pred CCeeeccCCCCCCcceeeEEcCCCCCEEEC-CeEEEEEEecCCCccEEEEEe----------------------------
Confidence 3221110 01111 2567889999999995 999999999997 68999999
Q ss_pred ecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecc
Q 023022 179 ITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFS 258 (288)
Q Consensus 179 i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~ 258 (288)
++++|+||+.+. .+......+++|+||+||++... ...|+++++++++++++++++++++|++
T Consensus 162 -------~~i~y~~Dt~~~--~~~~~~~~~~~DlLi~e~~~~~~--------~~~H~t~~~a~~~~~~~~~k~l~l~H~s 224 (252)
T PRK02113 162 -------GKMAYITDMLTM--PEEEYEQLQGIDVLVMNALRIAP--------HPTHQSLEEALENIKRIGAKETYLIHMS 224 (252)
T ss_pred -------CCEEEccCCCCC--CHHHHHHhcCCCEEEEhhhcCCC--------CCCcCCHHHHHHHHHHhCCCEEEEEccc
Confidence 159999999852 12233467899999999987332 4689999999999999999999999999
Q ss_pred CCCChhHHHHHHHhCCCcccceeeecccC
Q 023022 259 ARHKVDEIRRAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (288)
+++.. ..++.+.++ ..+.+|.||
T Consensus 225 ~~~~~--~~~~~~~~~----~~~~~A~Dg 247 (252)
T PRK02113 225 HHIGL--HADVEKELP----PHVHFAYDG 247 (252)
T ss_pred ccchh--HHHHHHhCC----CCceeccCc
Confidence 98753 233334443 247788887
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=213.44 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=146.7
Q ss_pred CceeEEEeC--CceEEEeCCCCCcc----ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHH
Q 023022 29 GHETCIIFP--SLDLAFDIGRCPSR----ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102 (288)
Q Consensus 29 ~~~s~~~i~--~~~iLiD~G~~~~~----~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~ 102 (288)
.+++|++++ +..+|||||..... ..++++|||||.|.||++|+..+.. ....++.||+|+.... +..++
T Consensus 35 r~~~s~li~~~~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl~~l~~----~~~~~i~i~~~~~~~~-~~~~~ 109 (250)
T PRK11244 35 RRPCSALIEFNGARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGLFPLRW----GVGDPIPVYGPPDPEG-CDDLF 109 (250)
T ss_pred cceeEEEEEECCCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccHHHHHh----hcCCceeEEeCCchhh-HHHHh
Confidence 346777775 56899999965422 2369999999999999999987743 2346788999987642 22222
Q ss_pred HhhhhcCCCCCceEE-EEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEeccccchhhcCCChHHHHHHHhcCceecc
Q 023022 103 EVHRRMDHSELNHTL-VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~ 181 (288)
... . ..++ ..+++++++.++ +++|+++++.|+.+++||+++.+ |
T Consensus 110 ~~~------~-~~~~~~~l~~~~~~~~~-~~~I~~~~~~H~~~s~g~~i~~~----------------------~----- 154 (250)
T PRK11244 110 KHP------G-ILDFSHPLEPFEPFDLG-GLQVTPLPLNHSKLTFGYLLETA----------------------H----- 154 (250)
T ss_pred cCc------c-ccccccccCCCCCeeEC-CEEEEEEeeCCCcceeEEEEecC----------------------C-----
Confidence 110 0 1122 357788999995 99999999999999999999864 2
Q ss_pred eEeCCeEEEecCCCCCccccccccc--cCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccC
Q 023022 182 TVTTPEVAFTGDTMSDFIVDEANID--VLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259 (288)
Q Consensus 182 ~~~~~~i~y~gD~~~~~~~~~~~~~--~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~ 259 (288)
++++|+|||.+.. +..... ..++|+|++||+|.+.. ....+|++++++++++++.++++++++|+++
T Consensus 155 ----~~i~ysgDt~~~~--~~~~~~~~~~~~Dlli~e~~~~~~~-----~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 155 ----SRVAYLTDTVGLP--EDTLKFLRNNQPDLLVLDCSHPPQE-----DAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred ----eEEEEEcCCCCCC--HHHHHHHhcCCCCEEEEeCcCCCCC-----CCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 5799999998621 111111 35899999999998654 1356899999999999999999999999998
Q ss_pred CCChhHHHHHHHhCCCcccceeeecccCC
Q 023022 260 RHKVDEIRRAVDAVPAPLAGRVFALTEGF 288 (288)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 288 (288)
+++. .+.+. ..+..+|.++.||.
T Consensus 224 ~~~~-~~~~~-----~~~~~~~~~a~DG~ 246 (250)
T PRK11244 224 QLDA-WLMEN-----AALPSGVEVAYDGM 246 (250)
T ss_pred Ccch-hhhhh-----hhcCCceEEecCcc
Confidence 7652 11121 23345688888883
No 8
>PRK00055 ribonuclease Z; Reviewed
Probab=99.96 E-value=1.5e-28 Score=216.25 Aligned_cols=226 Identities=27% Similarity=0.329 Sum_probs=150.1
Q ss_pred eEEEEeeec-----CceeEEEeC--CceEEEeCCCCCccc--------cCcCEEEEecCChhhhCcHHHHHHHhCCC-CC
Q 023022 20 YKVEGLSIA-----GHETCIIFP--SLDLAFDIGRCPSRA--------LSQNFLFISHAHMDHIGGLPMYVATRGLY-RM 83 (288)
Q Consensus 20 ~~v~g~~~~-----~~~s~~~i~--~~~iLiD~G~~~~~~--------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~-~~ 83 (288)
++|+|.+.+ .+++|+++. +..+|||||++..++ .++++|||||.|+||++|++.++..+... +.
T Consensus 4 i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~ 83 (270)
T PRK00055 4 LTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRT 83 (270)
T ss_pred EEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCC
Confidence 566775432 347788875 569999999987543 25899999999999999999998654332 35
Q ss_pred CCCEEeCCcchHHHHHHHHHhhhhcC----CCCC--ceEE-----EEcCCCCeE-EecCCeEEEEEEcCCc--CCcceEE
Q 023022 84 KPPTIIVPSCIKEDVEQLFEVHRRMD----HSEL--NHTL-----VGLDVGEEF-CMRKDLFVKAFKTYHV--IQSQGYV 149 (288)
Q Consensus 84 ~~~~i~~p~~~~~~l~~~~~~~~~~~----~~~~--~~~~-----~~l~~g~~~-~i~~~~~i~~~~~~H~--~~~~g~~ 149 (288)
+++.||+|+.+...++.......+.. .... .+.. ..+.++..+ .+..+.++. ..+|. .++++|+
T Consensus 84 ~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~i~~~~~~~ 161 (270)
T PRK00055 84 EPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVT--LEDGRIINPADVLG 161 (270)
T ss_pred ceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEE--eCCCcEEeHHHeec
Confidence 68899999999887776544321100 0000 0000 001111111 011122221 12444 2788998
Q ss_pred EEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHH
Q 023022 150 VYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQA 229 (288)
Q Consensus 150 i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~ 229 (288)
++.+ | ++++|+||+++. .......+++|+||+||+|.+.. ...+
T Consensus 162 ~~~~----------------------g---------~~~~y~~Dt~~~---~~~~~~~~~~d~li~E~~~~~~~--~~~~ 205 (270)
T PRK00055 162 PPRK----------------------G---------RKVAYCGDTRPC---EALVELAKGADLLVHEATFGDED--EELA 205 (270)
T ss_pred cCCC----------------------C---------cEEEEeCCCCCc---HHHHHHhCCCCEEEEeccCCcch--hhHH
Confidence 8653 3 579999999984 22334567999999999999765 3445
Q ss_pred hhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCC--hhHHHHHH-HhCCCcccceeeecccCC
Q 023022 230 RDYGHTHLSEIVEYAEKFENKAILLIHFSARHK--VDEIRRAV-DAVPAPLAGRVFALTEGF 288 (288)
Q Consensus 230 ~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~ 288 (288)
...+|++++++++++++.++++++++|++++++ .+++.+.. +.+ +.|.+|.||.
T Consensus 206 ~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~-----~~v~~a~Dg~ 262 (270)
T PRK00055 206 KEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF-----PNTELAEDLM 262 (270)
T ss_pred hhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc-----CCcEEccCCc
Confidence 578999999999999999999999999999986 33443333 333 3678888873
No 9
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.95 E-value=1.5e-26 Score=200.36 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=143.3
Q ss_pred CceeEEEeC--CceEEEeCCCCCcc----ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHH
Q 023022 29 GHETCIIFP--SLDLAFDIGRCPSR----ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLF 102 (288)
Q Consensus 29 ~~~s~~~i~--~~~iLiD~G~~~~~----~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~ 102 (288)
.+.+|+++. +..+|||||..... ..+|++|||||.|.||++|+..+.. ...+++.||+|+.+.. +..++
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~----~~~~~~~v~~~~~~~~-~~~~~ 99 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRW----GVGEPIPVYGPPDEEG-CDDLF 99 (238)
T ss_pred CcceEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHH----hcCCceeEEeCchHhh-HHHHh
Confidence 444555654 56999999965322 2369999999999999999987743 1245788999987643 22222
Q ss_pred HhhhhcCCCCCceEE-EEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEeccccchhhcCCChHHHHHHHhcCceecc
Q 023022 103 EVHRRMDHSELNHTL-VGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~ 181 (288)
.. ... ..+ ..+.+++++.++ +++|+++++.|+.+++||+|+.+ |
T Consensus 100 ~~------~~~-~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~g~~i~~~----------------------~----- 144 (238)
T TIGR03307 100 KH------PGI-LDFSKPLEAFEPFDLG-GLRVTPLPLVHSKLTFGYLLETD----------------------G----- 144 (238)
T ss_pred cC------ccc-ccccccccCCceEEEC-CEEEEEEecCCCCcceEEEEecC----------------------C-----
Confidence 11 011 122 247788999995 99999999999999999999754 3
Q ss_pred eEeCCeEEEecCCCCCcccccccccc--CCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccC
Q 023022 182 TVTTPEVAFTGDTMSDFIVDEANIDV--LRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259 (288)
Q Consensus 182 ~~~~~~i~y~gD~~~~~~~~~~~~~~--~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~ 259 (288)
++++|+||+.+. ........ .++|+||+||++..... ....|++++++++++++.++++++++|+++
T Consensus 145 ----~~i~y~gDt~~~--~~~~~~~~~~~~~D~li~e~~~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~lil~H~~~ 213 (238)
T TIGR03307 145 ----QRVAYLTDTAGL--PPDTEAFLKNHPLDVLILDCSHPPQSD-----APRNHNDLTRALAINEQLRPKQVILTHISH 213 (238)
T ss_pred ----cEEEEEecCCCC--CHHHHHHHhcCCCCEEEEeCCcCcccc-----CCCCcCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 579999999752 11111222 37999999999975431 346899999999999999999999999998
Q ss_pred CCChhHHHHHHHhCCCcccceeeecccCC
Q 023022 260 RHKVDEIRRAVDAVPAPLAGRVFALTEGF 288 (288)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 288 (288)
+++.. ..+... ....+.++.||.
T Consensus 214 ~~~~~-~~~~~~-----~~~~~~~a~DG~ 236 (238)
T TIGR03307 214 QLDAW-LMENPD-----LPSGVAVGYDGQ 236 (238)
T ss_pred ccchH-HHhhhh-----cCCceEEecccc
Confidence 76521 111211 234578888883
No 10
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.95 E-value=1.1e-26 Score=207.42 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=136.3
Q ss_pred CceeEEEeC-Cc--eEEEeCCCCCccc---------------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeC
Q 023022 29 GHETCIIFP-SL--DLAFDIGRCPSRA---------------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV 90 (288)
Q Consensus 29 ~~~s~~~i~-~~--~iLiD~G~~~~~~---------------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~ 90 (288)
..++|+++. ++ .+|||||+++..+ -++|+|||||.|+||+.|++.|. ...+++||+
T Consensus 37 R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~------~~~~l~Vyg 110 (302)
T PRK05184 37 RTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLR------EGQPFPVYA 110 (302)
T ss_pred ccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhc------cCCCeEEEe
Confidence 335777775 22 5999999987532 15899999999999999999873 356889999
Q ss_pred CcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEec--CCeEEEEEEcCCc-------------CCcceEEEEEecc
Q 023022 91 PSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR--KDLFVKAFKTYHV-------------IQSQGYVVYSVKQ 155 (288)
Q Consensus 91 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~--~~~~i~~~~~~H~-------------~~~~g~~i~~~~~ 155 (288)
|+.+.+.+...+... ........++++++.+++++.++ ++++|+++++.|+ .+++||+|+...
T Consensus 111 ~~~~~~~l~~~~~~f-~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~- 188 (302)
T PRK05184 111 TPAVLEDLSTGFPIF-NVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRA- 188 (302)
T ss_pred CHHHHHHHHhcCCcc-cccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecC-
Confidence 999887776432111 11000112467788888888884 4899999999764 569999996110
Q ss_pred ccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcH------HHH
Q 023022 156 KLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTV------EQA 229 (288)
Q Consensus 156 ~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~------~~~ 229 (288)
.| ++++|++|+.. +.+.....++++|+||+||++....... ...
T Consensus 189 -------------------~g---------~~~~y~tD~~~--~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~ 238 (302)
T PRK05184 189 -------------------TG---------KRLFYAPGLAE--VTDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTG 238 (302)
T ss_pred -------------------CC---------cEEEEECCCCC--CCHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCcccc
Confidence 13 57999988743 1234456788999999999964432000 001
Q ss_pred hhcCCCcHH---HHHHHHHHcCCCeEEEEeccCCC
Q 023022 230 RDYGHTHLS---EIVEYAEKFENKAILLIHFSARH 261 (288)
Q Consensus 230 ~~~~H~~~~---~~~~~~~~~~~~~~~l~H~~~~~ 261 (288)
...+|++.. ++++.+.+.++++++|||+++.+
T Consensus 239 ~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~ 273 (302)
T PRK05184 239 RRMGHLPQSGPGGMIAALARLPIARKILIHINNTN 273 (302)
T ss_pred ccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCC
Confidence 245788854 56888888889999999999764
No 11
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.92 E-value=1.8e-24 Score=180.95 Aligned_cols=174 Identities=30% Similarity=0.493 Sum_probs=134.1
Q ss_pred eEEEeCCCCCc--c--------c---cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHH-HHhh
Q 023022 40 DLAFDIGRCPS--R--------A---LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL-FEVH 105 (288)
Q Consensus 40 ~iLiD~G~~~~--~--------~---~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~-~~~~ 105 (288)
+||||||.+.. + . .++|+|||||.|.||+.|++.+......... ++|+|+.+.+.+... ....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~---~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK---PIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT---EEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc---eEEecHHHHHHHHhhhcccc
Confidence 69999999643 1 1 1689999999999999999998875432211 899999998888742 1111
Q ss_pred hhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcce----EEEEEeccccchhhcCCChHHHHHHHhcCceecc
Q 023022 106 RRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQG----YVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY 181 (288)
Q Consensus 106 ~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g----~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~ 181 (288)
... .......+..+.+++.++++ +++|+++|+.|..+..+ |+++.+ |
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~~~~~g~~i~~~----------------------~----- 129 (194)
T PF12706_consen 79 DLY-PEEDNFDIIEISPGDEFEIG-DFRITPFPANHGPPSYGGNKGFVIEPD----------------------G----- 129 (194)
T ss_dssp TTC-CTTSGEEEEEECTTEEEEET-TEEEEEEEEESSSCCEEECCEEEEEET----------------------T-----
T ss_pred ccc-ccccceeEEEeccCceEEec-eEEEEEEeccccccccccCceEEEecC----------------------C-----
Confidence 111 11223578888999999995 99999999999998887 999853 3
Q ss_pred eEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHH-HHhhcCCCcHHHHHHHHHHcCCCeEEEEec
Q 023022 182 TVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVE-QARDYGHTHLSEIVEYAEKFENKAILLIHF 257 (288)
Q Consensus 182 ~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~ 257 (288)
++++|+||+.++ ...++++|++++||++.... .. .+....|++++++.+++++.++++++++|+
T Consensus 130 ----~~i~~~gD~~~~------~~~~~~~D~li~~~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 130 ----KKIFYSGDTNYD------FEELKNIDLLILECGYIDEE--EEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp ----EEEEEETSSSSC------HHHHTTBSEEEEEBCBSSGG--HHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred ----cceEEeeccchh------hhhhccCCEEEEeCCCcchh--hcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 589999999982 23348899999999999866 23 456789999999999999999999999997
No 12
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=211.39 Aligned_cols=200 Identities=23% Similarity=0.246 Sum_probs=148.8
Q ss_pred CceeEEEeC---CceEEEeCCCCCcccc--------------CcCEEEEecCChhhhCcHHHHHHHhCC--C--CCCCCE
Q 023022 29 GHETCIIFP---SLDLAFDIGRCPSRAL--------------SQNFLFISHAHMDHIGGLPMYVATRGL--Y--RMKPPT 87 (288)
Q Consensus 29 ~~~s~~~i~---~~~iLiD~G~~~~~~~--------------~i~~I~iTH~H~DH~~gl~~ll~~~~~--~--~~~~~~ 87 (288)
.|-+++++. +..||+|||+++.-++ ++.+|||||.|+||..|++.+++.|.- . ...++.
T Consensus 459 RNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~ 538 (746)
T KOG2121|consen 459 RNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLL 538 (746)
T ss_pred cceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceE
Confidence 455677765 3469999999885321 479999999999999999999987642 1 457888
Q ss_pred EeCCcchHHHHHHHHHhhh-----hcCCCCCceE-EEEcC--------CCCeEEecCCeEEEEEEcCCcCCcceEEEEEe
Q 023022 88 IIVPSCIKEDVEQLFEVHR-----RMDHSELNHT-LVGLD--------VGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSV 153 (288)
Q Consensus 88 i~~p~~~~~~l~~~~~~~~-----~~~~~~~~~~-~~~l~--------~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~ 153 (288)
+.+|+....+++.+..... +... ..+.. +..-. ....+.-.+...|...++.|.+.++|-.+...
T Consensus 539 vv~P~ql~~wl~~y~~~~~~~~~~~~~i-~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~ 617 (746)
T KOG2121|consen 539 VVAPRQLKKWLQEYHRCPSFPASSVAKI-GAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPVIHCPQSYGCSITHG 617 (746)
T ss_pred EeChHHHHHHHHHHhcCcccchhhhhhh-cCchhhhhccCccccchhhhhHHHHhcCceeEEecCcEecChhhceeEecc
Confidence 9999999888876552211 0000 00000 00000 11112222477889999999999999999753
Q ss_pred ccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcC
Q 023022 154 KQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG 233 (288)
Q Consensus 154 ~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~ 233 (288)
.| .+++|+|||+++. ......+++|+||||||+.+.. .+.|..+.
T Consensus 618 ---------------------~~---------~Ki~YSGDTrP~~---~~v~~g~datlLIHEAT~ED~l--~EeAv~k~ 662 (746)
T KOG2121|consen 618 ---------------------SG---------WKIVYSGDTRPCE---DLVKAGKDATLLIHEATLEDDL--EEEAVEKG 662 (746)
T ss_pred ---------------------cc---------eEEEEcCCCCCch---hHhhhccCCceEEeehhhchhH--HHHHHHhC
Confidence 13 4899999999952 2345678999999999999988 68999999
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEeccCCCChh
Q 023022 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVD 264 (288)
Q Consensus 234 H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~ 264 (288)
|+|..||+.+++++++++++|||||.||..-
T Consensus 663 HST~sEAi~V~~~m~ar~liLTHFSQRY~K~ 693 (746)
T KOG2121|consen 663 HSTTSEAISVAKKMNAKRLILTHFSQRYPKV 693 (746)
T ss_pred CCCHHHHHHHHHhccchhhhhhhhhcccCCC
Confidence 9999999999999999999999999999754
No 13
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.91 E-value=8e-24 Score=188.52 Aligned_cols=191 Identities=16% Similarity=0.234 Sum_probs=134.5
Q ss_pred eeEEEeC--C-ceEEEeCCCCCccc---------------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCc
Q 023022 31 ETCIIFP--S-LDLAFDIGRCPSRA---------------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPS 92 (288)
Q Consensus 31 ~s~~~i~--~-~~iLiD~G~~~~~~---------------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~ 92 (288)
.++++++ + ..||||||++...+ .+|++|||||.|.||+.||+.|. +..+++||+++
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~------~~~~lpVya~~ 111 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLR------EGQPFTLYATE 111 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHc------CCCCceEEECH
Confidence 4667774 2 38999999877532 24899999999999999999884 24589999999
Q ss_pred chHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEec----CCeEEEEEEcC--------C------cCCcceEEEEEec
Q 023022 93 CIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMR----KDLFVKAFKTY--------H------VIQSQGYVVYSVK 154 (288)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~----~~~~i~~~~~~--------H------~~~~~g~~i~~~~ 154 (288)
.+.+.+.. +...... .....++++++.++++.++ ++++|+++++. | ..+++||+|+.+.
T Consensus 112 ~t~~~L~~-~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~ 188 (302)
T TIGR02108 112 MVLQDLSD-NPIFNVL--DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGT 188 (302)
T ss_pred HHHHHHHh-CCCcccc--chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCC
Confidence 98887753 1111101 1112344667778888764 25999999998 5 2478999997631
Q ss_pred cccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEeccc-CCCCCc-----HHH
Q 023022 155 QKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTY-VDDSTT-----VEQ 228 (288)
Q Consensus 155 ~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~-~~~~~~-----~~~ 228 (288)
.| ++++|++|++. +.+.....++++|+||+||+| .+.+.- ...
T Consensus 189 --------------------~g---------~~~~y~tD~g~--~~~~~~~~l~~~d~liida~~~~d~e~l~~g~ypri 237 (302)
T TIGR02108 189 --------------------TG---------KRLFYIPGCAE--ITDDLKARMAGADLVFFDGTLWRDDEMIRAGVGTKT 237 (302)
T ss_pred --------------------CC---------cEEEEECCCCC--CCHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCCCCc
Confidence 02 57999999984 223445678899999999995 432210 000
Q ss_pred HhhcCCCcHH---HHHHHHHHcCCCeEEEEeccCCC
Q 023022 229 ARDYGHTHLS---EIVEYAEKFENKAILLIHFSARH 261 (288)
Q Consensus 229 ~~~~~H~~~~---~~~~~~~~~~~~~~~l~H~~~~~ 261 (288)
....+|++.. ++++.+.+.++++++|+|+++.+
T Consensus 238 ~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~ 273 (302)
T TIGR02108 238 GRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTN 273 (302)
T ss_pred CCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCC
Confidence 1346788776 66777777889999999999976
No 14
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.90 E-value=3.7e-22 Score=186.60 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=136.2
Q ss_pred ecCceeEEEeCCceEEEeCCCCCcc-------------------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCE
Q 023022 27 IAGHETCIIFPSLDLAFDIGRCPSR-------------------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPT 87 (288)
Q Consensus 27 ~~~~~s~~~i~~~~iLiD~G~~~~~-------------------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~ 87 (288)
+|+|+.++...+..+|||||..... ..++++|||||+|.||++|+++++..+ ..++
T Consensus 12 iG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~-----~~~~ 86 (422)
T TIGR00649 12 IGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTV-----GFPP 86 (422)
T ss_pred cCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhC-----CCCe
Confidence 5677666666677999999975421 136899999999999999999997633 2357
Q ss_pred EeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCc-CCcceEEEEEeccccchhhcCCCh
Q 023022 88 IIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV-IQSQGYVVYSVKQKLKQEYLGLPG 166 (288)
Q Consensus 88 i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~-~~~~g~~i~~~~~~~~~~~~g~~~ 166 (288)
||+++.+...++..+... .. .....+..++++++++++++++|+++++.|+ ++++||++..++
T Consensus 87 Vy~~~~t~~~l~~~~~~~-~~---~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~------------ 150 (422)
T TIGR00649 87 IYGTPLTIALIKSKIKEN-KL---NVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL------------ 150 (422)
T ss_pred EEeCHHHHHHHHHHHHhc-CC---CCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC------------
Confidence 999999888777554311 01 1113467889999999965699999999996 579999997642
Q ss_pred HHHHHHHhcCceecceEeCCeEEEecCCCCCccc----cc----ccc-ccCCCCEEEEecccCCCCCcHHHHhhcCCCcH
Q 023022 167 DEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV----DE----ANI-DVLRARILVMESTYVDDSTTVEQARDYGHTHL 237 (288)
Q Consensus 167 ~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~----~~----~~~-~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~ 237 (288)
++++|+||+...... .. ... ..+++|+||+|+||..... .....|...
T Consensus 151 -------------------~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~----~~~~e~~~~ 207 (422)
T TIGR00649 151 -------------------GYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPG----FTPSEAKVL 207 (422)
T ss_pred -------------------cEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCC----CCCCHHHHH
Confidence 479999999762111 00 011 1256999999999986431 113446677
Q ss_pred HHHHHHHHHcCCCeEEEEeccCCCC
Q 023022 238 SEIVEYAEKFENKAILLIHFSARHK 262 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~H~~~~~~ 262 (288)
+++.+++++.+ ++++++||++...
T Consensus 208 ~~i~~~~~~~~-~~viv~~fa~~~~ 231 (422)
T TIGR00649 208 EQLNDIFKNAK-GRVIVATFASNIH 231 (422)
T ss_pred HHHHHHHHhCC-CEEEEEEccccHH
Confidence 77888887765 6799999997533
No 15
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.89 E-value=8.6e-22 Score=178.53 Aligned_cols=227 Identities=19% Similarity=0.192 Sum_probs=167.8
Q ss_pred eEEEEeeecCceeEEEeC--CceEEEeCCCCCccc---------------cCcCEEEEecCChhhhCcHHHHHHHhCCCC
Q 023022 20 YKVEGLSIAGHETCIIFP--SLDLAFDIGRCPSRA---------------LSQNFLFISHAHMDHIGGLPMYVATRGLYR 82 (288)
Q Consensus 20 ~~v~g~~~~~~~s~~~i~--~~~iLiD~G~~~~~~---------------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~ 82 (288)
++.+|....-..||++++ +.++|+|||..+... ..+|||+|||+|+||+|-+|.|.+ ++
T Consensus 183 vt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Yg--- 258 (637)
T COG1782 183 VTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YG--- 258 (637)
T ss_pred EEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cC---
Confidence 455555445557888886 679999999654321 258999999999999999999876 22
Q ss_pred CCCCEEeCCcchHHHHHHHHHhhhhc---CCCCCc----------eEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEE
Q 023022 83 MKPPTIIVPSCIKEDVEQLFEVHRRM---DHSELN----------HTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYV 149 (288)
Q Consensus 83 ~~~~~i~~p~~~~~~l~~~~~~~~~~---~~~~~~----------~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~ 149 (288)
. .-+|||.+.+++.+.-+...+... .....+ ...+++++|++-.+.+++++++..++|..+|..-.
T Consensus 259 y-~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~H 337 (637)
T COG1782 259 Y-DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAH 337 (637)
T ss_pred C-CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeE
Confidence 2 225899999988765443333211 111111 24678999999999999999999999999998888
Q ss_pred EEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCC--CccccccccccCCCCEEEEecccCCCCCcHH
Q 023022 150 VYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS--DFIVDEANIDVLRARILVMESTYVDDSTTVE 227 (288)
Q Consensus 150 i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~--~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~ 227 (288)
+.-++ |. ..++|+||..+ .++++.++..+++++.||+|+||+..+
T Consensus 338 lHIGd---------------------Gl--------yNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~---- 384 (637)
T COG1782 338 LHIGD---------------------GL--------YNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRD---- 384 (637)
T ss_pred EEecC---------------------Cc--------eeEEEecccccceeeecChhhccCcchhheeeeeccCCcc----
Confidence 87553 43 57999999987 477888888999999999999999654
Q ss_pred HHhhcCCCcHHHHHH----HHHHc--CCCeEEEEeccCCCChhHHHHHHHhCCCcccceeeecccCC
Q 023022 228 QARDYGHTHLSEIVE----YAEKF--ENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEGF 288 (288)
Q Consensus 228 ~~~~~~H~~~~~~~~----~~~~~--~~~~~~l~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 288 (288)
..+.+-+++.+ ...+. +..++++.-|+....+|-+.-+.+.+.++.-.+++++.||.
T Consensus 385 ----d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlDGM 447 (637)
T COG1782 385 ----DVQPPREEAEKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLDGM 447 (637)
T ss_pred ----ccCccHHHHHHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeeeee
Confidence 12334444333 33322 35789999999998988788888889999888899998883
No 16
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.87 E-value=8.9e-21 Score=163.01 Aligned_cols=196 Identities=14% Similarity=0.201 Sum_probs=138.4
Q ss_pred eEEEEeeecCceeEEEeC--CceEEEeCCCC---Cc----cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeC
Q 023022 20 YKVEGLSIAGHETCIIFP--SLDLAFDIGRC---PS----RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIV 90 (288)
Q Consensus 20 ~~v~g~~~~~~~s~~~i~--~~~iLiD~G~~---~~----~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~ 90 (288)
++++| ++|++++ +.++||||+.. .. ...++|+|++||.|.||+.++..++. ...+.+|+
T Consensus 3 i~~lG------~s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~------~~~~~v~~ 70 (228)
T PRK00685 3 ITWLG------HSAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAK------RTGATVIA 70 (228)
T ss_pred EEEEc------ceEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHH------hCCCEEEE
Confidence 55666 4677775 46999998532 11 12379999999999999999877643 23467999
Q ss_pred CcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCC------------cceEEEEEeccccc
Q 023022 91 PSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQ------------SQGYVVYSVKQKLK 158 (288)
Q Consensus 91 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~------------~~g~~i~~~~~~~~ 158 (288)
++...+.+... ... ++..+++++.+.++ +++|+++|+.|+.+ +.||+++.+
T Consensus 71 ~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~-~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~----- 133 (228)
T PRK00685 71 NAELANYLSEK----------GVE-KTHPMNIGGTVEFD-GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFE----- 133 (228)
T ss_pred eHHHHHHHHhc----------CCC-ceeeccCCCcEEEC-CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEEC-----
Confidence 88765554321 111 56788899999995 99999999999764 589999754
Q ss_pred hhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHH
Q 023022 159 QEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLS 238 (288)
Q Consensus 159 ~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~ 238 (288)
+ .+++|+||+.+..-.. ......++|++++.+. ...|++++
T Consensus 134 -----------------~---------~~i~~~GDt~~~~~~~-~~~~~~~~D~~~~~~~------------~~~h~~~~ 174 (228)
T PRK00685 134 -----------------G---------KTIYHAGDTGLFSDMK-LIGELHKPDVALLPIG------------DNFTMGPE 174 (228)
T ss_pred -----------------C---------eEEEEecCccchhHHH-HHHHhhCCCEEEEecC------------CccccCHH
Confidence 2 4799999998731111 1122357899998652 13589999
Q ss_pred HHHHHHHHcCCCeEEEEeccCC----CChhHHHHHHHhCCCcccceeeecccC
Q 023022 239 EIVEYAEKFENKAILLIHFSAR----HKVDEIRRAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~l~H~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (288)
++.+++++.++++++++|++.. -+.+++.++.++ ...++.++.+|
T Consensus 175 ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~G 223 (228)
T PRK00685 175 DAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG----LGTKVVILKPG 223 (228)
T ss_pred HHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh----cCCcEEECCCC
Confidence 9999999999999999999752 233334444433 45677777777
No 17
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.86 E-value=2.3e-20 Score=180.63 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=143.4
Q ss_pred ceEEEEeeecCceeEEEeC--CceEEEeCCCCCcc---------------ccCcCEEEEecCChhhhCcHHHHHHHhCCC
Q 023022 19 GYKVEGLSIAGHETCIIFP--SLDLAFDIGRCPSR---------------ALSQNFLFISHAHMDHIGGLPMYVATRGLY 81 (288)
Q Consensus 19 ~~~v~g~~~~~~~s~~~i~--~~~iLiD~G~~~~~---------------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~ 81 (288)
.++++|....-..||++++ +..+|||||..... ..++|+|||||+|.||+++++.|... ++
T Consensus 176 ~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~-g~- 253 (630)
T TIGR03675 176 RVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY-GY- 253 (630)
T ss_pred EEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh-CC-
Confidence 3667775433334677775 57999999965421 12489999999999999999998752 21
Q ss_pred CCCCCEEeCCcchHHHHHHHHHhhhhc---CCCCC----------ceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceE
Q 023022 82 RMKPPTIIVPSCIKEDVEQLFEVHRRM---DHSEL----------NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGY 148 (288)
Q Consensus 82 ~~~~~~i~~p~~~~~~l~~~~~~~~~~---~~~~~----------~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~ 148 (288)
..+||+++.+.+.+..++...... ..... ...+..+++++++.+.+++++++++++|.+|+..+
T Consensus 254 ---~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~ 330 (630)
T TIGR03675 254 ---DGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIA 330 (630)
T ss_pred ---CCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEE
Confidence 235899988877665443322110 00000 02467889999999977899999999999999988
Q ss_pred EEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCC--ccccccccccCCCCEEEEecccCCCCCcH
Q 023022 149 VVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSD--FIVDEANIDVLRARILVMESTYVDDSTTV 226 (288)
Q Consensus 149 ~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~--~~~~~~~~~~~~~d~li~E~t~~~~~~~~ 226 (288)
.+...+ |. .+++|+||.... .++........++|+||+|+||.+..
T Consensus 331 ~~~i~d---------------------g~--------~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~--- 378 (630)
T TIGR03675 331 HLHIGD---------------------GL--------YNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD--- 378 (630)
T ss_pred EEEECC---------------------CC--------EEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC---
Confidence 876432 21 479999999873 33333333456899999999999754
Q ss_pred HHHhhcCCCcHHH----HHHHHHHc--CCCeEEEEeccCCCChhHHHHHHHhCCCcccceeeecccC
Q 023022 227 EQARDYGHTHLSE----IVEYAEKF--ENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 227 ~~~~~~~H~~~~~----~~~~~~~~--~~~~~~l~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (288)
..|.+-++ +.+.+.+. +-+++++.=|+.-..++-+.-+.+...++....++++.+|
T Consensus 379 -----~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg 440 (630)
T TIGR03675 379 -----DYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG 440 (630)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc
Confidence 12333322 23333321 3467888888875554433333333333333345555554
No 18
>PRK04286 hypothetical protein; Provisional
Probab=99.83 E-value=6.4e-20 Score=163.65 Aligned_cols=210 Identities=14% Similarity=0.151 Sum_probs=125.6
Q ss_pred eEEEEeee-cCceeEEEeC--CceEEEeCCCCCc--c-----------------------ccCcCEEEEecCChhhhCcH
Q 023022 20 YKVEGLSI-AGHETCIIFP--SLDLAFDIGRCPS--R-----------------------ALSQNFLFISHAHMDHIGGL 71 (288)
Q Consensus 20 ~~v~g~~~-~~~~s~~~i~--~~~iLiD~G~~~~--~-----------------------~~~i~~I~iTH~H~DH~~gl 71 (288)
+.++|.+. |..++|++++ +.+||||||.... + ..++|+||+||.|+||+.|+
T Consensus 3 ~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 3 IIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred EEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCc
Confidence 44555543 4445777775 5699999995531 0 12599999999999999887
Q ss_pred HHHHHHhCCCCCCCCEEeCCcchHHH-----HH--HHHHhhhhcCC-CCCceEEEEcCCCCeEEecCCeEEEEE-EcCCc
Q 023022 72 PMYVATRGLYRMKPPTIIVPSCIKED-----VE--QLFEVHRRMDH-SELNHTLVGLDVGEEFCMRKDLFVKAF-KTYHV 142 (288)
Q Consensus 72 ~~ll~~~~~~~~~~~~i~~p~~~~~~-----l~--~~~~~~~~~~~-~~~~~~~~~l~~g~~~~i~~~~~i~~~-~~~H~ 142 (288)
..++-..+ .+..++.+|+.+.+... +. ..+........ .... ....+.+++++.++ +++|++. ++.|.
T Consensus 83 ~~~~y~~~-~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~~~~ig-~~~V~~~~~v~H~ 159 (298)
T PRK04286 83 YEDPYELS-DEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIA-KKIEYADGKTFRFG-GTTIEFSPPVPHG 159 (298)
T ss_pred cccccccc-cccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcC-CceEECCCCEEEEC-CEEEEEeccCCCC
Confidence 65521000 01123445554333210 10 00000000000 0000 12445678899995 9999976 77997
Q ss_pred CC--cceEEE----EEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCcccccccccc--CCCCEEE
Q 023022 143 IQ--SQGYVV----YSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDV--LRARILV 214 (288)
Q Consensus 143 ~~--~~g~~i----~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~--~~~d~li 214 (288)
.+ +.||.+ +.+ | ++++|+||+... +.+...... .++|+|+
T Consensus 160 ~~~~~~Gy~i~~ri~~g----------------------g---------~~~~~~gDt~~~-~~~~~~~~l~~~d~dlLi 207 (298)
T PRK04286 160 ADGSKLGYVIMVRISDG----------------------D---------ESFVFASDVQGP-LNDEAVEFILEKKPDVVI 207 (298)
T ss_pred CCCCccceEEEEEEEeC----------------------C---------EEEEEECCCCCC-CCHHHHHHHhcCCCCEEE
Confidence 54 777765 322 2 589999999921 112222233 3999999
Q ss_pred Eecc--cCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEE-eccCCCChhHHHH
Q 023022 215 MEST--YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLI-HFSARHKVDEIRR 268 (288)
Q Consensus 215 ~E~t--~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~-H~~~~~~~~~~~~ 268 (288)
++|. |.... .......|++.+.+.+++.. ++++++|+ |+|...+..++..
T Consensus 208 ~~~~p~~lk~~---ri~~~~~h~s~~~~~~l~~~-~~k~liLtHHls~~~n~~~~~~ 260 (298)
T PRK04286 208 IGGPPTYLLGR---RLSEEDLEKGIENLEEIVKN-TPETLILDHHLLRDKNYREKLK 260 (298)
T ss_pred eCCcchhhhhh---hhccccHHHHHHHHHHHHhc-CCCEEEEeccccccCCcHHHHH
Confidence 9984 33311 11123467888888888877 99999999 9999888777654
No 19
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.1e-18 Score=159.52 Aligned_cols=223 Identities=18% Similarity=0.273 Sum_probs=146.6
Q ss_pred eEEEEeeecCceeEEEeC--CceEEEeCCCCCccc-----c-----CcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCE
Q 023022 20 YKVEGLSIAGHETCIIFP--SLDLAFDIGRCPSRA-----L-----SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPT 87 (288)
Q Consensus 20 ~~v~g~~~~~~~s~~~i~--~~~iLiD~G~~~~~~-----~-----~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~ 87 (288)
+.+.|.+..-..+|+++. +..+|+|||...... . ++|+++|||+|.||+++++.+.... .+ .+
T Consensus 3 ~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~----~~-~~ 77 (427)
T COG1236 3 LRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG----FE-GP 77 (427)
T ss_pred eecccccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc----cC-Cc
Confidence 445666555557788775 569999999644211 1 3799999999999999999997632 22 56
Q ss_pred EeCCcchHHHHHHHHHhhhhcCCC---------C---CceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEecc
Q 023022 88 IIVPSCIKEDVEQLFEVHRRMDHS---------E---LNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQ 155 (288)
Q Consensus 88 i~~p~~~~~~l~~~~~~~~~~~~~---------~---~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~ 155 (288)
||+.+.+.+.+.-++......... . ...++++++.++++.++ +++|++++++|.+|+.+|.++.++
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~~~le~~~- 155 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLEVDG- 155 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeEEEEEeCC-
Confidence 999999988888666554432210 0 01256779999999996 799999999999999999998652
Q ss_pred ccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCC--CccccccccccCCCCEEEEecccCCCCCcHHHHhhcC
Q 023022 156 KLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS--DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYG 233 (288)
Q Consensus 156 ~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~--~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~ 233 (288)
.+++|+||... +.....+. ....+|+||+|+||.+.........+.
T Consensus 156 ------------------------------~~ilytGD~~~~~~~l~~~a~-~~~~~DvLI~EsTYg~~~~~~r~~~e~- 203 (427)
T COG1236 156 ------------------------------GRILYTGDVKRRKDRLLNGAE-LPPCIDVLIVESTYGDRLHPNRDEVER- 203 (427)
T ss_pred ------------------------------ceEEEEeccCCCcCCCCCccc-cCCCCcEEEEecccCCccCCCHHHHHH-
Confidence 36999999986 33332221 112269999999999865211111111
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEeccCCCChhHHHHHHHhCCCcccceeeecccC
Q 023022 234 HTHLSEIVEYAEKFENKAILLIHFSARHKVDEIRRAVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 234 H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (288)
.+.+.+..+-..| ..+++.=|.....+ |+...+..+.... +++++.||
T Consensus 204 --~f~~~v~~~l~~G-G~vlipafa~graQ-Ell~~L~~~~~~~--~~pi~~d~ 251 (427)
T COG1236 204 --RFIESVKAALERG-GTVLIPAFALGRAQ-ELLLILRELGFAG--DYPIYVDG 251 (427)
T ss_pred --HHHHHHHHHHhCC-CEEEEecccccHHH-HHHHHHHHHhccC--CCCeEecc
Confidence 1333444344434 67888888775443 4555444444322 55555554
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.76 E-value=2.5e-17 Score=155.98 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=137.9
Q ss_pred eeEeceEEEEee-ecCceeEEEeCCceEEEeCCCCCcc-------------------ccCcCEEEEecCChhhhCcHHHH
Q 023022 15 MQLQGYKVEGLS-IAGHETCIIFPSLDLAFDIGRCPSR-------------------ALSQNFLFISHAHMDHIGGLPMY 74 (288)
Q Consensus 15 ~~~~~~~v~g~~-~~~~~s~~~i~~~~iLiD~G~~~~~-------------------~~~i~~I~iTH~H~DH~~gl~~l 74 (288)
..+..+.+.|.. .|.|++.+.++++.+++|||..... ..++++|||||+|.||+|++|+|
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~l 86 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYL 86 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHH
Confidence 455666677764 7889888889899999999954321 12699999999999999999999
Q ss_pred HHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcC-CcceEEEEEe
Q 023022 75 VATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVI-QSQGYVVYSV 153 (288)
Q Consensus 75 l~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~-~~~g~~i~~~ 153 (288)
+... ..++||+++-+...+...+.... .......++.+++++.++++ ++.|+++++.|+. +++||.+.++
T Consensus 87 l~~~-----~~~piy~s~lt~~Li~~k~~~~~---~~~~~~~~~ev~~~~~i~~~-~~~v~f~~vtHSIPds~g~~i~Tp 157 (555)
T COG0595 87 LKQV-----LFAPIYASPLTAALIKEKLKEHG---LFKNENELHEVKPGSEIKFG-SFEVEFFPVTHSIPDSLGIVIKTP 157 (555)
T ss_pred HhcC-----CcCceecCHhhHHHHHHHHHHhc---cccccCceEEeCCCCeEEeC-cEEEEEEeecccCccceEEEEECC
Confidence 8632 23789999999888886655221 11222468899999999995 9999999999996 5999999987
Q ss_pred ccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCcc--c----cc--ccccc-CCCCEEEEecccCCCCC
Q 023022 154 KQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFI--V----DE--ANIDV-LRARILVMESTYVDDST 224 (288)
Q Consensus 154 ~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~--~----~~--~~~~~-~~~d~li~E~t~~~~~~ 224 (288)
. | .|+|+||...+.- . +. ..... .++.+||.|+|-...+.
T Consensus 158 ~---------------------G----------~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg 206 (555)
T COG0595 158 E---------------------G----------NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPG 206 (555)
T ss_pred C---------------------c----------cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCC
Confidence 3 4 6999999876321 1 10 01112 35899999999887431
Q ss_pred cHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccC
Q 023022 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259 (288)
Q Consensus 225 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~ 259 (288)
.....+.-.+.+.+.++.. ..+++++=|+.
T Consensus 207 ----~t~SE~~v~~~l~~i~~~a-~grVIv~tfaS 236 (555)
T COG0595 207 ----FTPSESEVGENLEDIIRNA-KGRVIVTTFAS 236 (555)
T ss_pred ----CCCCHHHHHHHHHHHHHhC-CCcEEEEEchh
Confidence 0011122223344444444 24555555555
No 21
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.73 E-value=1.5e-16 Score=142.38 Aligned_cols=238 Identities=21% Similarity=0.258 Sum_probs=156.1
Q ss_pred eEeceEEEEeeecCceeEEEeC----CceEEEeCCCCCcc-----------------------c------------cCcC
Q 023022 16 QLQGYKVEGLSIAGHETCIIFP----SLDLAFDIGRCPSR-----------------------A------------LSQN 56 (288)
Q Consensus 16 ~~~~~~v~g~~~~~~~s~~~i~----~~~iLiD~G~~~~~-----------------------~------------~~i~ 56 (288)
++..+...|.-..+|.++++++ +..+-+|+|..... . -.|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 3445555666667899999986 45888999942210 0 1389
Q ss_pred EEEEecCChhhhCcHHHHHHHhCCCC--CCCCEEeCCcchHHHHH-HHHHhhhhcCCCCCc-------eEEEEcCCCCeE
Q 023022 57 FLFISHAHMDHIGGLPMYVATRGLYR--MKPPTIIVPSCIKEDVE-QLFEVHRRMDHSELN-------HTLVGLDVGEEF 126 (288)
Q Consensus 57 ~I~iTH~H~DH~~gl~~ll~~~~~~~--~~~~~i~~p~~~~~~l~-~~~~~~~~~~~~~~~-------~~~~~l~~g~~~ 126 (288)
+.||||+|+||+.||. +.+-.... ..+.+||+.+.+.+.++ .+|++..|.+..... +++..+.+++..
T Consensus 82 ~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~ 159 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELI 159 (335)
T ss_pred eEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccccee
Confidence 9999999999999984 44333222 26778999999999998 688888887654322 345556655443
Q ss_pred Eec------------CCeEEEEEEcCCcCC------cceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeE
Q 023022 127 CMR------------KDLFVKAFKTYHVIQ------SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEV 188 (288)
Q Consensus 127 ~i~------------~~~~i~~~~~~H~~~------~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i 188 (288)
.+. .++.++++++.|... |.+|.|.... +| ..+
T Consensus 160 ~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~--------------------t~---------~~i 210 (335)
T PF02112_consen 160 PLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNI--------------------TG---------DEI 210 (335)
T ss_pred eccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCC--------------------CC---------CEE
Confidence 332 145677799999853 7899997652 23 679
Q ss_pred EEecCCCCCcc---------ccccc--cccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcC---------
Q 023022 189 AFTGDTMSDFI---------VDEAN--IDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE--------- 248 (288)
Q Consensus 189 ~y~gD~~~~~~---------~~~~~--~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~--------- 248 (288)
+|.||+.++.. ++... .......-+++||+|.+.. .....++|+++..+++..+...
T Consensus 211 l~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~~~~~---~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~ 287 (335)
T PF02112_consen 211 LFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSYPNSQ---PDSQLYGHLTPKHLIEELKVLASKVGQTSPP 287 (335)
T ss_pred EEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCCCCCC---CchHhhccCCHHHHHHHHHHHHhccccccCC
Confidence 99999998422 11111 1235688999999999876 4578899999987665544331
Q ss_pred --CCeEEEEeccCCCChh-----HHHHHHHhC--CCcccceeeecccC
Q 023022 249 --NKAILLIHFSARHKVD-----EIRRAVDAV--PAPLAGRVFALTEG 287 (288)
Q Consensus 249 --~~~~~l~H~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~g 287 (288)
-=+++++|.-+..... .+++.++++ .+...-.+.++.+|
T Consensus 288 L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 288 LKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLGVNFIIPEQG 335 (335)
T ss_pred CCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCceEEEEcCCC
Confidence 2369999999965422 223222222 22334566666655
No 22
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.71 E-value=1.6e-15 Score=137.82 Aligned_cols=154 Identities=13% Similarity=0.185 Sum_probs=106.2
Q ss_pred CcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCC-ceEEEEcCCCCeEEecCCe
Q 023022 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSEL-NHTLVGLDVGEEFCMRKDL 132 (288)
Q Consensus 54 ~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~i~~~~ 132 (288)
+||+||+||.|.||+ +.+.+..-.. .......+++|....+.+.. ... ..+++.+++|+++.++ ++
T Consensus 109 ~IDaVLiTH~H~DHl-D~~tl~~l~~-~~~~~~~~v~p~~~~~~~~~----------~Gvp~~rv~~v~~Ge~i~ig-~v 175 (355)
T PRK11709 109 EIDAVLATHDHSDHI-DVNVAAAVLQ-NCADHVKFIGPQACVDLWIG----------WGVPKERCIVVKPGDVVKVK-DI 175 (355)
T ss_pred CCCEEEECCCccccc-ChHHHHHHHh-hcCCCcEEEEcHHHHHHHHh----------cCCCcceEEEecCCCcEEEC-CE
Confidence 589999999999997 4444322111 11234668898877554321 011 1367889999999995 99
Q ss_pred EEEEEEcCCc-----------C-----------CcceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEE
Q 023022 133 FVKAFKTYHV-----------I-----------QSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAF 190 (288)
Q Consensus 133 ~i~~~~~~H~-----------~-----------~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y 190 (288)
+|+++|+.|. . .++||+|+.+ | ++++|
T Consensus 176 ~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~----------------------~---------~tvy~ 224 (355)
T PRK11709 176 KIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTP----------------------G---------GNIYH 224 (355)
T ss_pred EEEEEeccccccccccccccccccccccccCCcceEEEEEEeC----------------------C---------eEEEE
Confidence 9999998552 1 2478888754 2 58999
Q ss_pred ecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccC
Q 023022 191 TGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259 (288)
Q Consensus 191 ~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~ 259 (288)
+|||.+........ ...++|++++...- .. .....|++++++.++++.+++++++++|++.
T Consensus 225 sGDT~~~~~~~~i~-~~~~iDvall~iG~--~p-----~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dt 285 (355)
T PRK11709 225 SGDSHYSNYFAKHG-NDHQIDVALGSYGE--NP-----RGITDKMTSIDILRMAESLNAKVVIPVHHDI 285 (355)
T ss_pred eCCCCccHHHHHHH-hcCCCCEEEecCCC--CC-----CCCcCCCCHHHHHHHHHHcCCCEEEEEChhh
Confidence 99999842222211 22269999985532 11 0134699999999999999999999999987
No 23
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.71 E-value=3.8e-16 Score=135.73 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=131.3
Q ss_pred EEEEeeecCceeEEEeC--CceEEEeCCCCCc-----cc-------------cCcCEEEEecCChhhhCcHHHHHHHhCC
Q 023022 21 KVEGLSIAGHETCIIFP--SLDLAFDIGRCPS-----RA-------------LSQNFLFISHAHMDHIGGLPMYVATRGL 80 (288)
Q Consensus 21 ~v~g~~~~~~~s~~~i~--~~~iLiD~G~~~~-----~~-------------~~i~~I~iTH~H~DH~~gl~~ll~~~~~ 80 (288)
+.+|-+..-..||+++. +++|++|||.... +. .-||.|+|||.|+||++.||++-+-.++
T Consensus 7 ~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY 86 (501)
T KOG1136|consen 7 TPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGY 86 (501)
T ss_pred EeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCC
Confidence 34444444446788775 7899999996431 11 1389999999999999999999765443
Q ss_pred CCCCCCEEeCCcchHHHHHHHHHhhhhc--C---CCCC---------ceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcc
Q 023022 81 YRMKPPTIIVPSCIKEDVEQLFEVHRRM--D---HSEL---------NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQ 146 (288)
Q Consensus 81 ~~~~~~~i~~p~~~~~~l~~~~~~~~~~--~---~~~~---------~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~ 146 (288)
.. +||.+-.+++..--++..+... + ..++ .-++..+...+++.++.+++|+++.++|..++.
T Consensus 87 --~G--PIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAa 162 (501)
T KOG1136|consen 87 --DG--PIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAA 162 (501)
T ss_pred --CC--ceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeeccccccee
Confidence 22 3555555554443334333211 1 1111 025677788899999889999999999999999
Q ss_pred eEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCC--CccccccccccCCCCEEEEecccCCCCC
Q 023022 147 GYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS--DFIVDEANIDVLRARILVMESTYVDDST 224 (288)
Q Consensus 147 g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~--~~~~~~~~~~~~~~d~li~E~t~~~~~~ 224 (288)
.|++.-++ .+++|+||..- ++.+.++....-++|+||.|+||...-.
T Consensus 163 Mf~ikvGd-------------------------------~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiR 211 (501)
T KOG1136|consen 163 MFYIKVGD-------------------------------QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIR 211 (501)
T ss_pred EEEEEecc-------------------------------eeEEEecCccCCcccccchhhhccccCceEEeeccceeeec
Confidence 99997643 57999999753 5555554444567999999999997541
Q ss_pred cHHHHhhcCCCcHHHHHH---HHHHcCCCeEEEEeccCCCChh
Q 023022 225 TVEQARDYGHTHLSEIVE---YAEKFENKAILLIHFSARHKVD 264 (288)
Q Consensus 225 ~~~~~~~~~H~~~~~~~~---~~~~~~~~~~~l~H~~~~~~~~ 264 (288)
+..-..-.+-++ .+.+ +..++++.-|.-...+|
T Consensus 212 ------dskr~rERdFLk~VhecVa-~GGkvlIPvFALGRAQE 247 (501)
T KOG1136|consen 212 ------DSKRCRERDFLKKVHECVA-RGGKVLIPVFALGRAQE 247 (501)
T ss_pred ------cccchhHHHHHHHHHHHHh-cCCeEEEEeeecchHHH
Confidence 122222223222 2333 34577777777655443
No 24
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.69 E-value=5.5e-16 Score=136.63 Aligned_cols=196 Identities=22% Similarity=0.235 Sum_probs=115.5
Q ss_pred ceEEEeCCCCCccc-c-----CcCEEEEecCChhhhCcHHHHHHHhCCCC-CCCCEEeCCcchHHHHHHHHHhhhhcCCC
Q 023022 39 LDLAFDIGRCPSRA-L-----SQNFLFISHAHMDHIGGLPMYVATRGLYR-MKPPTIIVPSCIKEDVEQLFEVHRRMDHS 111 (288)
Q Consensus 39 ~~iLiD~G~~~~~~-~-----~i~~I~iTH~H~DH~~gl~~ll~~~~~~~-~~~~~i~~p~~~~~~l~~~~~~~~~~~~~ 111 (288)
+.++||+|++...+ + .+|+||+||.|+||+.|++.|........ ..+...-++ ....+...+...
T Consensus 41 ~~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 112 (269)
T COG1235 41 KTLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRAS--TSDRLLGGFPYL------ 112 (269)
T ss_pred eeEEEecChhHHhhhhcccccccCeEEEecccHHhhcChHHHHHHhcCCcccccceeccc--chhhhhccchhh------
Confidence 46788888876533 2 59999999999999999999987443211 111111111 111111111100
Q ss_pred CCceEEEEcCCCCeEEecCCeEEEEEEcCCcC-CcceEEEEEeccccchhhcCCChHHHHHHHhcCceecc--eEeCCeE
Q 023022 112 ELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVI-QSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITY--TVTTPEV 188 (288)
Q Consensus 112 ~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~-~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~--~~~~~~i 188 (288)
...+..+++...+. ++.+++++..|.. ...++.+.....++.. +..++. ....+.+
T Consensus 113 ----~~~~~~~~~~~~~~-~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~----------------~~~~g~~~~~~~~~v 171 (269)
T COG1235 113 ----FRHPFPPFSLPAIG-GLEVTPFPVPHDAIEPVGFVIIRTGRKLHG----------------GTDIGYGLEWRIGDV 171 (269)
T ss_pred ----hcCCCCcccccccc-ceeeecCCCCCccccCCCcccccCcccccc----------------cccceeeeeeeeccE
Confidence 01122234444453 6666666666653 3333444322111000 000000 0122568
Q ss_pred EEecCCCC-CccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChhHHH
Q 023022 189 AFTGDTMS-DFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEIR 267 (288)
Q Consensus 189 ~y~gD~~~-~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~~~~ 267 (288)
+|++|+.. +...+.........++.+.++++.+.. ....|.+++++.+++.+.++++++|+|+++.++++++.
T Consensus 172 ay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~g------h~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~ 245 (269)
T COG1235 172 AYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPG------HLSNHLSAEEALELIEKLKPKRLVLTHLSHKNDDEELP 245 (269)
T ss_pred EEccccccCcchhHHHHhcCCccceeeeeccccccC------CCCCchhHHHHHHHHHhCCcceEEEEecCCCCCHHHHh
Confidence 99999986 222222334556788999999988753 35789999999999999999999999999999977665
Q ss_pred HH
Q 023022 268 RA 269 (288)
Q Consensus 268 ~~ 269 (288)
++
T Consensus 246 ~~ 247 (269)
T COG1235 246 EL 247 (269)
T ss_pred hh
Confidence 54
No 25
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.56 E-value=5.6e-14 Score=115.63 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=81.5
Q ss_pred CceeEEEeC--CceEEEeCCCCCc-c------c---cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHH
Q 023022 29 GHETCIIFP--SLDLAFDIGRCPS-R------A---LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKE 96 (288)
Q Consensus 29 ~~~s~~~i~--~~~iLiD~G~~~~-~------~---~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~ 96 (288)
..++|++++ +..+|||||.+.. . . .++++|++||.|.||++|++.+... ..+++|+++...+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~------~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA------PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC------CCCcEEEchhhhH
Confidence 446677775 5689999995542 1 1 2699999999999999999988763 3456889888877
Q ss_pred HHHHHHHhhhh-cCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEE
Q 023022 97 DVEQLFEVHRR-MDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVY 151 (288)
Q Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~ 151 (288)
.+......... .........+..+..++++.++ +.+++++++ +|+.++++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~ 133 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLP 133 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEEC
Confidence 66532211000 0001112356778889999995 888888887 889999998884
No 26
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-13 Score=116.74 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=137.0
Q ss_pred CcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHH-HHHHhhhhcCCCCC---ceEEEEcCCCCeEEec
Q 023022 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVE-QLFEVHRRMDHSEL---NHTLVGLDVGEEFCMR 129 (288)
Q Consensus 54 ~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~-~~~~~~~~~~~~~~---~~~~~~l~~g~~~~i~ 129 (288)
.|..-||||+|.||+.|+- ++.-....+++-+||+.+.+.+.++ ..+++..|.+...- .++++.++|.+..++.
T Consensus 112 ~I~~y~ITH~HLDHIsGlV--inSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt 189 (356)
T COG5212 112 SINSYFITHAHLDHISGLV--INSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT 189 (356)
T ss_pred hhhheEeccccccchhcee--ecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee
Confidence 3899999999999999973 4433333467779999999999998 67777777654332 3688999998776653
Q ss_pred -CCeEEEEEEcCCcC----C--cceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccc
Q 023022 130 -KDLFVKAFKTYHVI----Q--SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDE 202 (288)
Q Consensus 130 -~~~~i~~~~~~H~~----~--~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~ 202 (288)
-.+++.+||++|.. | +.+|.|...+ +. .-++|+||+.++....+
T Consensus 190 ~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nk--------------------S~---------~~f~~fGDvepD~vese 240 (356)
T COG5212 190 LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNK--------------------SN---------EFFAYFGDVEPDDVESE 240 (356)
T ss_pred eeeecceeeeccCCcccCCcccceEEEEecCC--------------------Cc---------ceEEEecCCCcchhhhh
Confidence 25789999999974 3 3667776432 11 46999999998532211
Q ss_pred -ccc----------ccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHc----------CCCeEEEEeccCCC
Q 023022 203 -ANI----------DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKF----------ENKAILLIHFSARH 261 (288)
Q Consensus 203 -~~~----------~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~----------~~~~~~l~H~~~~~ 261 (288)
.+. ......-+++||+|++.. ......+|+++.-++...... +.-.+++||.-+..
T Consensus 241 ~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~---~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p 317 (356)
T COG5212 241 KLLDTVWRKLAEKITQQQLKGILIECSYPNDV---ADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSP 317 (356)
T ss_pred HHHHHHHHHHHHhhhHHhhCceEEEecCCCCC---ChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcc
Confidence 111 123467799999999876 234678999998776655443 23468999998732
Q ss_pred ---C-hh-HHHH---HHHhCCCcccceeeecccC
Q 023022 262 ---K-VD-EIRR---AVDAVPAPLAGRVFALTEG 287 (288)
Q Consensus 262 ---~-~~-~~~~---~~~~~~~~~~~~~~~~~~g 287 (288)
. +. -+++ .+.+-.+....++.++.+|
T Consensus 318 ~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~~~G 351 (356)
T COG5212 318 QQGQDPRKLILEELQFLAEQGNLMGIEFIIMEQG 351 (356)
T ss_pred cccCCHHHHHHHHHHHHHhcCCccceEEEeeecc
Confidence 2 11 1333 3345566677788888887
No 27
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.49 E-value=8.4e-14 Score=127.94 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=140.6
Q ss_pred EeceEEEEeeec--CceeEEEeC--CceEEEeCCCCCcc-------------ccCcCEEEEecCChhhhCcHHHHHHHhC
Q 023022 17 LQGYKVEGLSIA--GHETCIIFP--SLDLAFDIGRCPSR-------------ALSQNFLFISHAHMDHIGGLPMYVATRG 79 (288)
Q Consensus 17 ~~~~~v~g~~~~--~~~s~~~i~--~~~iLiD~G~~~~~-------------~~~i~~I~iTH~H~DH~~gl~~ll~~~~ 79 (288)
..++.|..++.| -..||..++ +++|++|||....- .-.+|.++|||.|+||++.+|++++.-.
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTs 90 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTS 90 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeecc
Confidence 345556555433 336888876 78999999964321 1258999999999999999999987433
Q ss_pred CCCCCCCEEeCCcchHHHHHHHHHhhhhcCCC----CC---------ceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcc
Q 023022 80 LYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHS----EL---------NHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQ 146 (288)
Q Consensus 80 ~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~----~~---------~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~ 146 (288)
++ -++|....++...+.++..+...... .+ .-++..++..+++++ .|++|.++.++|..+++
T Consensus 91 f~----grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev-~gIkf~p~~aGhVlgac 165 (668)
T KOG1137|consen 91 FI----GRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEV-NGIKFWPYHAGHVLGAC 165 (668)
T ss_pred cc----ceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeecccccc-CCeEEEeeccchhhhhe
Confidence 32 35677777877777777655322111 01 014556667778888 49999999999999999
Q ss_pred eEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCC--CccccccccccCCCCEEEEecccCCCCC
Q 023022 147 GYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS--DFIVDEANIDVLRARILVMESTYVDDST 224 (288)
Q Consensus 147 g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~--~~~~~~~~~~~~~~d~li~E~t~~~~~~ 224 (288)
.|.++.. | -+++|+||... ++.+..++....+.|+++.|.||+..-+
T Consensus 166 Mf~veia----------------------g---------v~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h 214 (668)
T KOG1137|consen 166 MFMVEIA----------------------G---------VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIH 214 (668)
T ss_pred eeeeeec----------------------e---------EEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEec
Confidence 9999864 4 47999999876 4444444445567999999999997542
Q ss_pred cHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChhHH
Q 023022 225 TVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVDEI 266 (288)
Q Consensus 225 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~~~ 266 (288)
..+..+--.+.+++.-... +..|+++.-|.-.+..|-+
T Consensus 215 ---~~r~~re~rlt~vIh~~v~-rGGR~L~PvFAlgrAqELl 252 (668)
T KOG1137|consen 215 ---EPREEREGRLTWVIHSTVP-RGGRVLIPVFALGRAQELL 252 (668)
T ss_pred ---CchHHhhhhhhhhHHhhcc-CCCceEeeeeecchHHHHH
Confidence 1111111122223322222 3468899999988776533
No 28
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.42 E-value=7.4e-13 Score=107.97 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=94.2
Q ss_pred eEEEEeeecCceeEEEeC--CceEEEeCCCCCc----cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcc
Q 023022 20 YKVEGLSIAGHETCIIFP--SLDLAFDIGRCPS----RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSC 93 (288)
Q Consensus 20 ~~v~g~~~~~~~s~~~i~--~~~iLiD~G~~~~----~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~ 93 (288)
++.+| .+|++++ +.+||+|+..... ...++|+|++||.|.||+.. ..+ ..+
T Consensus 2 It~lg------ha~~~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~-~~l---------~~~------- 58 (163)
T PF13483_consen 2 ITWLG------HASFLIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDP-ETL---------KRL------- 58 (163)
T ss_dssp EEEEE------TTEEEEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CC-CCC---------CCH-------
T ss_pred EEEEE------eeEEEEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCCh-hHh---------hhc-------
Confidence 45565 5677765 5699999997421 13579999999999999754 111 010
Q ss_pred hHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCc-------CCcceEEEEEeccccchhhcCCCh
Q 023022 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV-------IQSQGYVVYSVKQKLKQEYLGLPG 166 (288)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~-------~~~~g~~i~~~~~~~~~~~~g~~~ 166 (288)
. .+.+.+.+++.++++ +++|+.++..|. ....+|.++.+
T Consensus 59 --------~------------~~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~------------- 104 (163)
T PF13483_consen 59 --------D------------RDIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVG------------- 104 (163)
T ss_dssp --------H------------TSSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEET-------------
T ss_pred --------c------------cccEEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeC-------------
Confidence 0 134567778889995 999999999885 34789999864
Q ss_pred HHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHH
Q 023022 167 DEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEK 246 (288)
Q Consensus 167 ~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 246 (288)
| .++++.||+.... .........++|++++-+.- ...+..+++.+++++
T Consensus 105 ---------g---------~~i~~~Gd~~~~~-~~~~~~~~~~vDvl~~p~~g------------~~~~~~~~a~~~~~~ 153 (163)
T PF13483_consen 105 ---------G---------VTIYHAGDTGFPP-DDEQLKQLGKVDVLFLPVGG------------PFTMGPEEAAELAER 153 (163)
T ss_dssp ---------T---------EEEEE-TT--S----HHHHHHH-S-SEEEEE--T------------TTS--HHHHHHHHHH
T ss_pred ---------C---------CEEEEECCCccCC-CHHHHhcccCCCEEEecCCC------------CcccCHHHHHHHHHH
Confidence 4 5899999998631 11223455689999997743 235799999999999
Q ss_pred cCCCeEEEEe
Q 023022 247 FENKAILLIH 256 (288)
Q Consensus 247 ~~~~~~~l~H 256 (288)
.++|.++.+|
T Consensus 154 l~pk~viP~H 163 (163)
T PF13483_consen 154 LKPKLVIPMH 163 (163)
T ss_dssp CT-SEEEEES
T ss_pred cCCCEEEeCC
Confidence 9999999998
No 29
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.42 E-value=1.6e-12 Score=113.23 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=71.9
Q ss_pred eeEEEe-C-C-ceEEEeCCCCCc-------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHH
Q 023022 31 ETCIIF-P-S-LDLAFDIGRCPS-------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQ 100 (288)
Q Consensus 31 ~s~~~i-~-~-~~iLiD~G~~~~-------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~ 100 (288)
..+|++ . + ..+|||+|.... ...++++|++||.|.||++|+..+.... +++||+++...
T Consensus 10 N~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~------~~~V~~~~~~~----- 78 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF------PAPVYGPAEER----- 78 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC------CCeEEeccccc-----
Confidence 344554 3 2 599999996431 1236899999999999999999987633 25788876430
Q ss_pred HHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEE
Q 023022 101 LFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVY 151 (288)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~ 151 (288)
. +.....+.+|+.+.++ +.+|+++++ +|++++++|++.
T Consensus 79 -------~-----~~~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~ 117 (248)
T TIGR03413 79 -------I-----PGITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP 117 (248)
T ss_pred -------C-----CCCcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC
Confidence 0 1113567889999995 899999987 799999999985
No 30
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.39 E-value=3.9e-12 Score=118.05 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=81.1
Q ss_pred ecCceeEEEeC-CceEEEeCCCCCc---------c---ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcc
Q 023022 27 IAGHETCIIFP-SLDLAFDIGRCPS---------R---ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSC 93 (288)
Q Consensus 27 ~~~~~s~~~i~-~~~iLiD~G~~~~---------~---~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~ 93 (288)
.|...+||++. ++.+|||||.... + ..+|++|++||.|.||++|++.+++.. ...++|+++.
T Consensus 29 ~g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~-----p~a~V~~~~~ 103 (394)
T PRK11921 29 RGSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI-----PDTPIYCTKN 103 (394)
T ss_pred CceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC-----CCCEEEECHH
Confidence 34556788886 4689999996431 1 125999999999999999999997632 2467999887
Q ss_pred hHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-C-CcCCcceEEEEE
Q 023022 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-Y-HVIQSQGYVVYS 152 (288)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~-H~~~~~g~~i~~ 152 (288)
..+.+...+. . ...+..+++|+++.++ +.+++++++ + |+++++.+++.+
T Consensus 104 ~~~~l~~~~~-------~--~~~~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~~ 154 (394)
T PRK11921 104 GAKSLKGHYH-------Q--DWNFVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLTG 154 (394)
T ss_pred HHHHHHHHhC-------C--CCceEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEcC
Confidence 7665543221 1 1245678899999995 899999866 3 999999888853
No 31
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.36 E-value=7e-12 Score=109.61 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=70.6
Q ss_pred eeEEEeC----CceEEEeCCCCCc-------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHH
Q 023022 31 ETCIIFP----SLDLAFDIGRCPS-------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVE 99 (288)
Q Consensus 31 ~s~~~i~----~~~iLiD~G~~~~-------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~ 99 (288)
..+|++. +..++||+|.... ..++|++|++||.|+||++|+..|.... ..++||++... .+
T Consensus 12 Ny~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~-----~~~~V~~~~~~--~~- 83 (258)
T PLN02469 12 NYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV-----PGIKVYGGSLD--NV- 83 (258)
T ss_pred eEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHC-----CCCEEEEechh--cC-
Confidence 3356553 2589999995321 1246999999999999999999997632 23578886421 00
Q ss_pred HHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEE
Q 023022 100 QLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVY 151 (288)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~ 151 (288)
.. ..+.+.+|+.+.++++..++++.+ +|++++++|.+.
T Consensus 84 -----------~~---~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~ 122 (258)
T PLN02469 84 -----------KG---CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVT 122 (258)
T ss_pred -----------CC---CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEec
Confidence 00 124578899999964478888887 999999999985
No 32
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.31 E-value=1.4e-11 Score=110.63 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=72.5
Q ss_pred eeEEEeC----CceEEEeCCCCCc-------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHH
Q 023022 31 ETCIIFP----SLDLAFDIGRCPS-------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVE 99 (288)
Q Consensus 31 ~s~~~i~----~~~iLiD~G~~~~-------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~ 99 (288)
..+|++. +..++||+|.... ...++++|++||.|.||++|...|.... +++||++....+.+.
T Consensus 87 Ny~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~------ga~V~g~~~~~~~i~ 160 (329)
T PLN02398 87 NYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY------GAKVIGSAVDKDRIP 160 (329)
T ss_pred eEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc------CCEEEEehHHhhhcc
Confidence 3455552 2479999996431 1257999999999999999999997632 367899865432210
Q ss_pred HHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEE
Q 023022 100 QLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVY 151 (288)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~ 151 (288)
. .-..+.+|+++.++ +.+++++.+ +|++++++|.+.
T Consensus 161 ------------~---~d~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~ 197 (329)
T PLN02398 161 ------------G---IDIVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFP 197 (329)
T ss_pred ------------C---CcEEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEEC
Confidence 1 12467889999995 889999988 999999999884
No 33
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.30 E-value=1.6e-11 Score=107.04 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=71.1
Q ss_pred ceeEEEeC--CceEEEeCCCCCc-------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHH
Q 023022 30 HETCIIFP--SLDLAFDIGRCPS-------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQ 100 (288)
Q Consensus 30 ~~s~~~i~--~~~iLiD~G~~~~-------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~ 100 (288)
|-.++++. +..++||+|.... ...++++|++||.|.||++|+..|.... ..++||++.....
T Consensus 12 Ny~~li~~~~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~-----~~~~V~~~~~~~~---- 82 (251)
T PRK10241 12 NYIWVLNDEAGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKF-----PQIVVYGPQETQD---- 82 (251)
T ss_pred eEEEEEEcCCCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHC-----CCCEEEecccccc----
Confidence 33444544 3589999997532 1246899999999999999999997643 2357888754311
Q ss_pred HHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEE
Q 023022 101 LFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVV 150 (288)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i 150 (288)
. ...+.+.+|+.+.++ +.+++++.+ +|+.++++|..
T Consensus 83 ----------~---~~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~ 119 (251)
T PRK10241 83 ----------K---GTTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFS 119 (251)
T ss_pred ----------c---CCceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeec
Confidence 0 012467789999995 889999887 89999999964
No 34
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.29 E-value=2.2e-11 Score=105.83 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=79.1
Q ss_pred ccceeeEeceEEEEeeecCceeEEEeC------CceEEEeCCCC-Cc--------cccCcCEEEEecCChhhhCcHHHHH
Q 023022 11 SGRGMQLQGYKVEGLSIAGHETCIIFP------SLDLAFDIGRC-PS--------RALSQNFLFISHAHMDHIGGLPMYV 75 (288)
Q Consensus 11 ~~~~~~~~~~~v~g~~~~~~~s~~~i~------~~~iLiD~G~~-~~--------~~~~i~~I~iTH~H~DH~~gl~~ll 75 (288)
.++.|.+.++.-.+.+ +.||++. +..+|||+|.. .. ..++|.+||+||.|.||++|...|.
T Consensus 7 ~~~~m~~~~~~~~~~~----~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 7 SSSKLLFRQLFEKESS----TYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCCceEEEEeecCCce----eEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHH
Confidence 3467888777766543 5566653 24899999953 21 1246899999999999999999986
Q ss_pred HHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEE
Q 023022 76 ATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVY 151 (288)
Q Consensus 76 ~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~ 151 (288)
... ..+++++.+.. .. .. -..+.+|+.+.++ +.+++++.+ +|++++++|.+.
T Consensus 83 ~~~-----~~a~v~~~~~~---------------~~--~~-d~~l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~ 135 (251)
T PLN02962 83 TKL-----PGVKSIISKAS---------------GS--KA-DLFVEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTG 135 (251)
T ss_pred HHC-----CCCeEEecccc---------------CC--CC-CEEeCCCCEEEEC-CEEEEEEECCCCCcCcEEEEec
Confidence 532 12455554311 00 01 1347789999995 899999888 999999999884
No 35
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.28 E-value=3.9e-11 Score=113.66 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=81.6
Q ss_pred ecCceeEEEeC-CceEEEeCCCCCc---------cc---cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcc
Q 023022 27 IAGHETCIIFP-SLDLAFDIGRCPS---------RA---LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSC 93 (288)
Q Consensus 27 ~~~~~s~~~i~-~~~iLiD~G~~~~---------~~---~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~ 93 (288)
.|...+||++. +..+|||+|.... +. .+|++|++||.|.||++|++.|++.. ...+||+++.
T Consensus 31 ~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-----p~a~V~~s~~ 105 (479)
T PRK05452 31 RGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-----PDTPIYCTAN 105 (479)
T ss_pred CCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-----CCCEEEECHH
Confidence 34455777775 5699999996421 01 25899999999999999999997632 2467999887
Q ss_pred hHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc--CCcCCcceEEEEE
Q 023022 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT--YHVIQSQGYVVYS 152 (288)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~--~H~~~~~g~~i~~ 152 (288)
....+..... ....+++.+++|+.+.++++.+++++++ .|++++..+++.+
T Consensus 106 ~~~~l~~~~~--------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~ 158 (479)
T PRK05452 106 AIDSINGHHH--------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG 158 (479)
T ss_pred HHHHHHHhhc--------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC
Confidence 7665543211 0123567889999999975577888777 4999999888853
No 36
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.27 E-value=1.1e-09 Score=96.07 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=116.1
Q ss_pred eeEEEeC--CceEEEeCCCCCcc-------------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchH
Q 023022 31 ETCIIFP--SLDLAFDIGRCPSR-------------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIK 95 (288)
Q Consensus 31 ~s~~~i~--~~~iLiD~G~~~~~-------------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~ 95 (288)
.+|++++ +.+||||+...... ...+|+|++||.|.||+. ...++... ......++.|....
T Consensus 14 ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~-~~~~~~~~---~~~~~~~~~p~~~~ 89 (258)
T COG2220 14 HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLD-DETLIALR---TNKAPVVVVPLGAG 89 (258)
T ss_pred ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccC-HHHHHHHh---cCCCcEEEeHHHHH
Confidence 6677775 56899999854321 125899999999999964 44443311 12244566665543
Q ss_pred HHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCcC-----C--------cceEEEEEeccccchhhc
Q 023022 96 EDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVI-----Q--------SQGYVVYSVKQKLKQEYL 162 (288)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~-----~--------~~g~~i~~~~~~~~~~~~ 162 (288)
..+.. ..-....++.+..++.+.++ ++++++.++.|.. + ..+|.+..+
T Consensus 90 ~~~~~---------~g~~~~~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~--------- 150 (258)
T COG2220 90 DLLIR---------DGVEAERVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETP--------- 150 (258)
T ss_pred HHHHh---------cCCCcceEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeC---------
Confidence 22210 01112357788899999994 9999888887752 1 457787654
Q ss_pred CCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHH
Q 023022 163 GLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVE 242 (288)
Q Consensus 163 g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~ 242 (288)
| .++++.||+.+ ...........+|+++++.--.. ...++..+++.+
T Consensus 151 -------------g---------~~iyh~GDt~~--~~~~~~~~~~~~DvallPig~~~---------~~~~~~~~~~~~ 197 (258)
T COG2220 151 -------------G---------GRVYHAGDTGY--LFLIIEELDGPVDVALLPIGGYP---------NATMMPPEAAVA 197 (258)
T ss_pred -------------C---------ceEEeccCccH--HHHhhhhhcCCccEEEeccCCCC---------CCccCCHHHHHH
Confidence 2 57999999997 11111222334899999875322 245789999999
Q ss_pred HHHHcCCCeEEEEecc
Q 023022 243 YAEKFENKAILLIHFS 258 (288)
Q Consensus 243 ~~~~~~~~~~~l~H~~ 258 (288)
+++.++++.++.+|++
T Consensus 198 ~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 198 AAEVLRPKRVIPMHYG 213 (258)
T ss_pred HHHHhcCCeEEeeccc
Confidence 9999999999999998
No 37
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.23 E-value=2.4e-11 Score=99.89 Aligned_cols=50 Identities=28% Similarity=0.477 Sum_probs=39.8
Q ss_pred CceeEEEeC--CceEEEeCCCCCcc------------ccCcCEEEEecCChhhhCcHHHHHHHh
Q 023022 29 GHETCIIFP--SLDLAFDIGRCPSR------------ALSQNFLFISHAHMDHIGGLPMYVATR 78 (288)
Q Consensus 29 ~~~s~~~i~--~~~iLiD~G~~~~~------------~~~i~~I~iTH~H~DH~~gl~~ll~~~ 78 (288)
++++|++++ ++.+|||||..... ..+|++||+||.|.||++|+..+....
T Consensus 4 ~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~ 67 (194)
T PF00753_consen 4 GGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG 67 (194)
T ss_dssp EEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT
T ss_pred eeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc
Confidence 456777775 57999999986531 136999999999999999999998743
No 38
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.11 E-value=3.8e-09 Score=99.90 Aligned_cols=165 Identities=16% Similarity=0.277 Sum_probs=112.0
Q ss_pred EEeeecCceeEEEeC--CceEEEeCCCCCcc-----------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEe
Q 023022 23 EGLSIAGHETCIIFP--SLDLAFDIGRCPSR-----------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTII 89 (288)
Q Consensus 23 ~g~~~~~~~s~~~i~--~~~iLiD~G~~~~~-----------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~ 89 (288)
......++.-|++++ +.+||||||..-.- ...||+|+|||...=|+|||+|.+...++ + ++||
T Consensus 7 ~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl---~-~~VY 82 (764)
T KOG1135|consen 7 LCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL---N-APVY 82 (764)
T ss_pred eccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCc---c-ceEE
Confidence 333344555666655 67999999975421 13699999999999999999999875543 2 6788
Q ss_pred CCcchHHH----HHHHHHhhhh---cCCC---CC--ce-EEEEcCCCCeEEec---CCeEEEEEEcCCcCCcceEEEEEe
Q 023022 90 VPSCIKED----VEQLFEVHRR---MDHS---EL--NH-TLVGLDVGEEFCMR---KDLFVKAFKTYHVIQSQGYVVYSV 153 (288)
Q Consensus 90 ~p~~~~~~----l~~~~~~~~~---~~~~---~~--~~-~~~~l~~g~~~~i~---~~~~i~~~~~~H~~~~~g~~i~~~ 153 (288)
++-.+... +.+.+..... ++.. .. .+ ++.++++.|++.+. .|++|++++++|++|..-|.|...
T Consensus 83 AT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~ 162 (764)
T KOG1135|consen 83 ATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKV 162 (764)
T ss_pred EecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEec
Confidence 87665431 1122211111 1111 11 12 57889999999885 478999999999999888999764
Q ss_pred ccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCC--Cccccc-cccccCCCCEEEEecccCCC
Q 023022 154 KQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMS--DFIVDE-ANIDVLRARILVMESTYVDD 222 (288)
Q Consensus 154 ~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~--~~~~~~-~~~~~~~~d~li~E~t~~~~ 222 (288)
| ..|+|+-|..+ +..+.. ....+.++-+||.++.....
T Consensus 163 ----------------------~---------E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~ 203 (764)
T KOG1135|consen 163 ----------------------G---------EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALY 203 (764)
T ss_pred ----------------------C---------ceEEEEEecccchhcccCCccccccCCcceEEeccccccc
Confidence 3 47999999876 333332 33456789999999865543
No 39
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=93.81 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=72.6
Q ss_pred CceeEEEeC-C-ceEEEeCCCCCc--cc---------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchH
Q 023022 29 GHETCIIFP-S-LDLAFDIGRCPS--RA---------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIK 95 (288)
Q Consensus 29 ~~~s~~~i~-~-~~iLiD~G~~~~--~~---------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~ 95 (288)
.+.+.+.+. + ..+|||||.... .. ..|++|++||.|.||++|+..+.+... ..+++..+...
T Consensus 24 ~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-----~~~~~~~~~~~ 98 (252)
T COG0491 24 GNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-----AAPVIAPAEVP 98 (252)
T ss_pred cccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-----CceEEccchhh
Confidence 334444444 3 699999998652 11 258999999999999999998865322 23455544433
Q ss_pred HHHHHHHHhhhh--cCCCC--CceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEEE
Q 023022 96 EDVEQLFEVHRR--MDHSE--LNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVYS 152 (288)
Q Consensus 96 ~~l~~~~~~~~~--~~~~~--~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~~ 152 (288)
............ ..... .......+..++.+.++ +..++++++ +|++++++|.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tpGHT~g~~~~~~~~ 159 (252)
T COG0491 99 LLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG-GLELEVLHTPGHTPGHIVFLLED 159 (252)
T ss_pred hhhhcccccccccccccCCCCccccceecCCCCEEEec-CeEEEEEECCCCCCCeEEEEECC
Confidence 322211110000 00011 11234556678889985 677777776 9999999999964
No 40
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.98 E-value=4e-09 Score=90.87 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=60.1
Q ss_pred cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCe
Q 023022 53 LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDL 132 (288)
Q Consensus 53 ~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~ 132 (288)
.++.+||.||.|+||++|+..|.+.+. ..+.+|+.. .+.+. .+ -+.++.++.+.++ |.
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~----~~~~v~g~~--~~r~~------------~i---~~~~~~~e~~~~~-g~ 107 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIP----YDIKVIGGA--DDRIP------------GI---TRGLKDGETVTVG-GL 107 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhcc----CCcEEecCC--hhcCc------------cc---cccCCCCcEEEEC-CE
Confidence 479999999999999999999976432 356777764 11111 01 1237888999996 99
Q ss_pred EEEEEEc-CCcCCcceEEEEE
Q 023022 133 FVKAFKT-YHVIQSQGYVVYS 152 (288)
Q Consensus 133 ~i~~~~~-~H~~~~~g~~i~~ 152 (288)
+|+++++ +|+.+++.|++..
T Consensus 108 ~v~~l~TPgHT~~hi~~~~~~ 128 (265)
T KOG0813|consen 108 EVRCLHTPGHTAGHICYYVTE 128 (265)
T ss_pred EEEEEeCCCccCCcEEEEeec
Confidence 9999998 9999999999974
No 41
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.95 E-value=2e-08 Score=85.71 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=43.1
Q ss_pred CceEEEeCCCCCccc-----------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHH
Q 023022 38 SLDLAFDIGRCPSRA-----------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKE 96 (288)
Q Consensus 38 ~~~iLiD~G~~~~~~-----------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~ 96 (288)
+.+||||+|...... .+||+++|||.|+||++||++++. .....+++|+++....
T Consensus 31 ~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~----~~~~~i~v~ahp~af~ 96 (259)
T COG1237 31 GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLE----ENNPGIPVYAHPDAFK 96 (259)
T ss_pred CeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHh----ccCCCceEEeChHHHh
Confidence 569999999654321 269999999999999999999876 2345678999887755
No 42
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.89 E-value=7.7e-09 Score=95.77 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=104.4
Q ss_pred CcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeE
Q 023022 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLF 133 (288)
Q Consensus 54 ~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~ 133 (288)
.+.+-|+||.|.||..||.- .+....+||.+-+...+...+. .. .-.++.++.++++.+. ++.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~--------sW~~p~lYCS~ita~Lv~~~~~----v~----~~~i~~l~l~~~~~i~-~~~ 174 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTK--------SWSHPPLYCSPITARLVPLKVS----VT----KQSIQALDLNQPLEIP-GIQ 174 (481)
T ss_pred ccceeeeecccccccccccc--------cccCCcccccccchhhhhhhcc----cC----hhhceeecCCCceeec-ceE
Confidence 47799999999999888752 2233349998877666654332 11 1135788889999994 899
Q ss_pred EEEEEcCCcCCcceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCc-ccc-ccccccCCCC
Q 023022 134 VKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDF-IVD-EANIDVLRAR 211 (288)
Q Consensus 134 i~~~~~~H~~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~-~~~-~~~~~~~~~d 211 (288)
+++++++|.+|++.|.+.... | +.++++||.+.+. +.. ++....+.+|
T Consensus 175 vt~ldAnHCPGa~mf~F~~~~---------------------~---------~~~lhtGDFR~s~~m~~~p~~~~~~~i~ 224 (481)
T KOG1361|consen 175 VTLLDANHCPGAVMFLFELSF---------------------G---------PCILHTGDFRASADMSKEPALTLEQTID 224 (481)
T ss_pred EEEeccccCCCceEEEeecCC---------------------C---------ceEEecCCcccChhhhhChHHhcCCccc
Confidence 999999999999999997531 3 5899999999842 222 1223347899
Q ss_pred EEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCC--e--EEEEeccC
Q 023022 212 ILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENK--A--ILLIHFSA 259 (288)
Q Consensus 212 ~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~--~--~~l~H~~~ 259 (288)
.+.+|+||.+..++ ....+-..+.+.+++.....+ + +++.+++-
T Consensus 225 ~lyLDtTycnp~y~----Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysi 272 (481)
T KOG1361|consen 225 ILYLDTTYCNPKYD----FPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSI 272 (481)
T ss_pred eEEEeecccCCCCC----CccHHHHHHHHHHHHHhhhhhCCceEEEEEEEec
Confidence 99999999987641 122234455555555554333 2 44445544
No 43
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.89 E-value=1.3e-07 Score=93.48 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=92.1
Q ss_pred CCceEEEeCCCCCcc---------------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHH
Q 023022 37 PSLDLAFDIGRCPSR---------------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL 101 (288)
Q Consensus 37 ~~~~iLiD~G~~~~~---------------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~ 101 (288)
++..+|||+|+.... ..++|++++||.|.||++|+..+++... ...++.|.....
T Consensus 458 ~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~-----v~~i~~~~~~~~----- 527 (662)
T TIGR00361 458 NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP-----VKRLVIPKGFVE----- 527 (662)
T ss_pred CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC-----ccEEEeccchhh-----
Confidence 367999999975211 1259999999999999999999987543 235666654110
Q ss_pred HHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEcCCc------CCcceEEEEEeccccchhhcCCChHHHHHHHhc
Q 023022 102 FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHV------IQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSS 175 (288)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~------~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~ 175 (288)
. ......+..|+.+.++ +++++++..... ..|+.++++.+
T Consensus 528 ---------~--~~~~~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~N~~S~vl~i~~~---------------------- 573 (662)
T TIGR00361 528 ---------E--GVAIEECKRGDVWQWQ-GLQFHVLSPEAPDPASKNNHSCVLWVDDG---------------------- 573 (662)
T ss_pred ---------C--CCceEecCCCCEEeEC-CEEEEEECCCCccCCCCCCCceEEEEEEC----------------------
Confidence 0 1124567889999985 899998754321 23566666543
Q ss_pred CceecceEeCCeEEEecCCCCCcccccccc--ccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEE
Q 023022 176 GTEITYTVTTPEVAFTGDTMSDFIVDEANI--DVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAIL 253 (288)
Q Consensus 176 G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~--~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 253 (288)
+ .+++++||...+.. +.... ...++|+|..- .. ....++ ..++.++.+|+..+
T Consensus 574 ~---------~~~L~tGD~~~~~E-~~l~~~~~~l~~dvLk~~--HH----------GS~~Ss---s~~fl~~v~P~~ai 628 (662)
T TIGR00361 574 G---------NSWLLTGDLEAEGE-QEVMRVFPNIKADVLQVG--HH----------GSKTST---SEELIQQVQPKVAI 628 (662)
T ss_pred C---------eeEEEecCCCHHHH-HHHHhcccCcCccEEEeC--CC----------CCCCCC---hHHHHHhcCCCEEE
Confidence 2 57999999987310 01111 12246676651 00 011122 34666777888877
Q ss_pred EE
Q 023022 254 LI 255 (288)
Q Consensus 254 l~ 255 (288)
+.
T Consensus 629 iS 630 (662)
T TIGR00361 629 IS 630 (662)
T ss_pred EE
Confidence 64
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.81 E-value=6.7e-08 Score=81.80 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=113.6
Q ss_pred eeEeceEEEEeeecCceeEEEeCCceEEEeCCCCCc--cc-----------------------cCcCEEEEecCChhhhC
Q 023022 15 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPS--RA-----------------------LSQNFLFISHAHMDHIG 69 (288)
Q Consensus 15 ~~~~~~~v~g~~~~~~~s~~~i~~~~iLiD~G~~~~--~~-----------------------~~i~~I~iTH~H~DH~~ 69 (288)
|.+.++..-.++..+..+.+...+-.||||+|.... +. -+.|-|.|||.|+||..
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 345555555555555555555657799999996542 10 13799999999999987
Q ss_pred cH-HHHHHHh-----CCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEE-cCCc
Q 023022 70 GL-PMYVATR-----GLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFK-TYHV 142 (288)
Q Consensus 70 gl-~~ll~~~-----~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~-~~H~ 142 (288)
.+ +.+.... .....+-+-+-.|....+.-+......+.-...... .-..+.+|++|.+| +..|++-| +.|+
T Consensus 81 Pf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~-~~ie~ADgk~f~fG-~t~IefS~pvpHG 158 (304)
T COG2248 81 PFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIA-REIEYADGKTFEFG-GTVIEFSPPVPHG 158 (304)
T ss_pred ccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhc-ceeEecCCceEEeC-CEEEEecCCCCCC
Confidence 62 1121111 011122222233322222222211111100111111 23456789999995 99999965 5998
Q ss_pred CC--cceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCcccccccc--ccCCCCEEEEec-
Q 023022 143 IQ--SQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANI--DVLRARILVMES- 217 (288)
Q Consensus 143 ~~--~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~~~~~~--~~~~~d~li~E~- 217 (288)
.. .+||++..- +++ ...+++|+.|+.-. ..+.+.+ .-+++|++|+.+
T Consensus 159 ~eGskLGyVl~v~-------------------------V~d--g~~~i~faSDvqGp-~~~~~l~~i~e~~P~v~ii~GP 210 (304)
T COG2248 159 REGSKLGYVLMVA-------------------------VTD--GKSSIVFASDVQGP-INDEALEFILEKRPDVLIIGGP 210 (304)
T ss_pred CcccccceEEEEE-------------------------Eec--CCeEEEEcccccCC-CccHHHHHHHhcCCCEEEecCC
Confidence 74 478877421 110 01579999999631 1122222 235899999986
Q ss_pred -ccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCC
Q 023022 218 -TYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260 (288)
Q Consensus 218 -t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~ 260 (288)
||.-.. ......--...+.+.+++.+.+ +.+++-|.--|
T Consensus 211 pty~lg~---r~~~~~~E~~irNl~~ii~~~~-~~lViDHHllR 250 (304)
T COG2248 211 PTYLLGY---RVGPKSLEKGIRNLERIIEETN-ATLVIDHHLLR 250 (304)
T ss_pred chhHhhh---hcChHHHHHHHHHHHHHHHhCc-ceEEEeehhhc
Confidence 322111 0000111234555666666655 78888877664
No 45
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.78 E-value=3.8e-08 Score=89.33 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=82.3
Q ss_pred ecCceeEEEeC-CceEEEeCCCCCcc---------c---cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcc
Q 023022 27 IAGHETCIIFP-SLDLAFDIGRCPSR---------A---LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSC 93 (288)
Q Consensus 27 ~~~~~s~~~i~-~~~iLiD~G~~~~~---------~---~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~ 93 (288)
.|...++|++. ++.+|||++..... . -+||+|+++|.-.||.+.++.+++. ....+|++++.
T Consensus 32 ~GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~-----~p~a~ii~s~~ 106 (388)
T COG0426 32 RGTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL-----APNAKIICSKL 106 (388)
T ss_pred CCceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHh-----CCCCEEEeeHH
Confidence 34445667765 56999999965421 1 1499999999999999999999862 33578999988
Q ss_pred hHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc--CCcCCcceEEEE
Q 023022 94 IKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT--YHVIQSQGYVVY 151 (288)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~--~H~~~~~g~~i~ 151 (288)
..++++..... . ..+..++.|+.+.+| |-+++++++ -|++++..-+..
T Consensus 107 ~~~~L~~~~~~-------~--~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TYd~ 156 (388)
T COG0426 107 AARFLKGFYHD-------P--EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTYDP 156 (388)
T ss_pred HHHHHHHhcCC-------c--cceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEeec
Confidence 88888765521 1 127889999999997 888888776 699988755553
No 46
>PRK11539 ComEC family competence protein; Provisional
Probab=98.71 E-value=4.9e-07 Score=90.62 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCceEEEeCCCCCc---------------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHH
Q 023022 37 PSLDLAFDIGRCPS---------------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQL 101 (288)
Q Consensus 37 ~~~~iLiD~G~~~~---------------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~ 101 (288)
+++.+|||+|.... +..++|+|++||.|.||++|++.+++... ..+++.+....
T Consensus 519 ~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~-----~~~i~~~~~~~------ 587 (755)
T PRK11539 519 NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP-----MAWIRSPLNWA------ 587 (755)
T ss_pred CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCC-----cceeeccCccc------
Confidence 36799999997421 11369999999999999999999987442 23566653110
Q ss_pred HHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCc-----CCcceEEEEE
Q 023022 102 FEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHV-----IQSQGYVVYS 152 (288)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~-----~~~~g~~i~~ 152 (288)
...+...|+.+.++ +++++++.. .|. ..|+.++++.
T Consensus 588 --------------~~~~~~~g~~~~~~-~~~~~vL~P~~~~~~~~N~~S~Vl~i~~ 629 (755)
T PRK11539 588 --------------NHLPCVRGEQWQWQ-GLTFSVHWPLEQSNDAGNNDSCVIRVDD 629 (755)
T ss_pred --------------CcccccCCCeEeEC-CEEEEEEecCcccCCCCCCccEEEEEEE
Confidence 01224567888884 899998743 443 2366777764
No 47
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.45 E-value=9.7e-06 Score=71.81 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=75.3
Q ss_pred CceEEEeCCCCC--ccc---------cCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhh
Q 023022 38 SLDLAFDIGRCP--SRA---------LSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHR 106 (288)
Q Consensus 38 ~~~iLiD~G~~~--~~~---------~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~ 106 (288)
+..+++|.|... ... -+||.+++||.|.||++|+..+++.+.. +.+-++.+........ ..
T Consensus 63 ~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v---~~~~i~~~~~~~~~~~-~~---- 134 (293)
T COG2333 63 GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV---PELWIYAGSDSTSTFV-LR---- 134 (293)
T ss_pred CceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC---CcEEEeCCCCccchhh-hh----
Confidence 569999999832 211 2599999999999999999999985432 2333444433322111 10
Q ss_pred hcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcC-----CcceEEEEEeccccchhhcCCChHHHHHHHhcCceec
Q 023022 107 RMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVI-----QSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEIT 180 (288)
Q Consensus 107 ~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~-----~~~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~ 180 (288)
...........|+.+.++ +..++++.. .... .|+..++...+
T Consensus 135 -----~~~~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~-------------------------- 182 (293)
T COG2333 135 -----DAGIPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLNNDSCVLRVTFGG-------------------------- 182 (293)
T ss_pred -----hcCCceeccccCceEEEC-CeEEEEEcCCccccccccCcceEEEEEeCC--------------------------
Confidence 112345667788999995 999998643 4432 46777776542
Q ss_pred ceEeCCeEEEecCCCC
Q 023022 181 YTVTTPEVAFTGDTMS 196 (288)
Q Consensus 181 ~~~~~~~i~y~gD~~~ 196 (288)
.+++++||...
T Consensus 183 -----~s~LlTGD~e~ 193 (293)
T COG2333 183 -----NSFLLTGDLEE 193 (293)
T ss_pred -----eeEEEecCCCc
Confidence 57999999976
No 48
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.32 E-value=2.9e-06 Score=68.12 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred eeEEEeC----CceEEEeCCCCCc-c--------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHH
Q 023022 31 ETCIIFP----SLDLAFDIGRCPS-R--------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKED 97 (288)
Q Consensus 31 ~s~~~i~----~~~iLiD~G~~~~-~--------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~ 97 (288)
+..|++. +..++||+-.... + .+++.+-+-||.|+||+.|-..|..- .++.+..
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~-------------~pg~kSV 87 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTL-------------LPGCKSV 87 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHh-------------cccHHHH
Confidence 4445553 4699999986442 1 13577888999999999998876431 1123333
Q ss_pred HHHHHHhhhhcCCCCCceEEEEcCCCCeEEecCCeEEEEEEc-CCcCCcceEEEEE
Q 023022 98 VEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKT-YHVIQSQGYVVYS 152 (288)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~i~~~~~-~H~~~~~g~~i~~ 152 (288)
+...- .-. .-.-+++|+.++++ ++.+++..+ +|+.+|+-|+..+
T Consensus 88 is~~S---------Gak-AD~~l~~Gd~i~~G-~~~le~ratPGHT~GC~TyV~~d 132 (237)
T KOG0814|consen 88 ISSAS---------GAK-ADLHLEDGDIIEIG-GLKLEVRATPGHTNGCVTYVEHD 132 (237)
T ss_pred hhhcc---------ccc-cccccCCCCEEEEc-cEEEEEecCCCCCCceEEEEecC
Confidence 32111 000 12357889999995 999999887 9999999999964
No 49
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.70 E-value=0.00029 Score=60.05 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=97.0
Q ss_pred CcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCCCCCceEEEEcCCCCeEEe---cC
Q 023022 54 SQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCM---RK 130 (288)
Q Consensus 54 ~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i---~~ 130 (288)
++|-++.+|.|+||. .+..+.. + ....+..-++|...+..+.. .. .-.+..+..+++.++ ++
T Consensus 132 ~~d~~~vsh~h~dhl-d~~~~~~-~--~~~~~~~wfvp~g~k~~m~~----------~g-c~~v~el~wwe~~~~vkn~~ 196 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHL-DADAVKK-I--TDRNPQIWFVPLGMKKWMEG----------DG-SSTVTELNWGESSEFVKNGK 196 (343)
T ss_pred CCceecccccccccc-chHHHHh-h--hccCccceeehhhhhheecC----------CC-CCceeEeeccchhceecCCc
Confidence 589999999999994 4555543 1 12223336777666544431 11 112344444443332 23
Q ss_pred CeEEEEEEcCCcCCc----------ceEEEEEeccccchhhcCCChHHHHHHHhcCceecceEeCCeEEEecCCCCCccc
Q 023022 131 DLFVKAFKTYHVIQS----------QGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIV 200 (288)
Q Consensus 131 ~~~i~~~~~~H~~~~----------~g~~i~~~~~~~~~~~~g~~~~~l~~l~~~G~~i~~~~~~~~i~y~gD~~~~~~~ 200 (288)
-++|.+.|+.|...- .+|.+..+ + .+++|.|||+++...
T Consensus 197 ~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~----------------------~---------nrfffaGDTGyc~~~ 245 (343)
T KOG3798|consen 197 TYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGE----------------------N---------NRFFFAGDTGYCDGE 245 (343)
T ss_pred EEEEEEcchhhhcccccccCCcceeeeeEEecC----------------------C---------ceEEecCCCCcccHH
Confidence 467788899997421 24444322 2 479999999996422
Q ss_pred -cccccccCCCCEEEEecc-cCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccC
Q 023022 201 -DEANIDVLRARILVMEST-YVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSA 259 (288)
Q Consensus 201 -~~~~~~~~~~d~li~E~t-~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~ 259 (288)
...-..+..+|+..+-+. |-.+ -.+...|..++|+.++-+..++++.+-.|-+.
T Consensus 246 F~~IgerfGpfdLAaiPiGaYePr-----WfmK~~HInPeEav~Ihkdv~arns~gIHWGT 301 (343)
T KOG3798|consen 246 FKKIGERFGPFDLAAIPIGAYEPR-----WFMKSQHINPEEAVEIHKDVRAKNSIGIHWGT 301 (343)
T ss_pred HHHHHHhcCCcceeeccccccCch-----hhcccccCCHHHHHHHHHHHhhhcceeEeeee
Confidence 122223445888888753 4333 34678899999999999999999999888776
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.39 E-value=0.00015 Score=48.94 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=32.4
Q ss_pred eEEEe--CCceEEE-eCCCCCccc--------cCcCEEEEecCC-hhhhCc
Q 023022 32 TCIIF--PSLDLAF-DIGRCPSRA--------LSQNFLFISHAH-MDHIGG 70 (288)
Q Consensus 32 s~~~i--~~~~iLi-D~G~~~~~~--------~~i~~I~iTH~H-~DH~~g 70 (288)
.|+++ ++.++|| +||++++|. .++++||+|+.. +|+++|
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 45555 3679999 999999864 369999999999 999887
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.77 E-value=0.00099 Score=54.24 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=52.1
Q ss_pred CceEEEeCCCCCcc-------ccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHHHHHHHHhhhhcCC
Q 023022 38 SLDLAFDIGRCPSR-------ALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDH 110 (288)
Q Consensus 38 ~~~iLiD~G~~~~~-------~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~l~~~~~~~~~~~~ 110 (288)
+++||||+-+-... .-.++.|+||| .||+.....+.+.. ..+||+|....+.+
T Consensus 32 ~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~------~a~i~~p~~d~~~~------------ 91 (199)
T PF14597_consen 32 EGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQT------GAKIYGPAADAAQF------------ 91 (199)
T ss_dssp T--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--------EEEEEGGGCCC-------------
T ss_pred CCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHh------CCeeeccHHHHhhC------------
Confidence 78999999987643 23599999996 69999998887644 45799987664221
Q ss_pred CCCceEEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEE
Q 023022 111 SELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVY 151 (288)
Q Consensus 111 ~~~~~~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~ 151 (288)
.+. .-..+.+|+++ + +|++|-.++-.|+++.+++.++
T Consensus 92 -p~~-~D~~l~dge~i-~-~g~~vi~l~G~ktpGE~ALlle 128 (199)
T PF14597_consen 92 -PLA-CDRWLADGEEI-V-PGLWVIHLPGSKTPGELALLLE 128 (199)
T ss_dssp -SS---SEEE-TT-BS-S-TTEEEEEE-SSSSTTEEEEEET
T ss_pred -CCC-CccccccCCCc-c-CceEEEEcCCCCCCceeEEEec
Confidence 111 12346666644 3 6888888887899999999995
No 52
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.76 E-value=0.0008 Score=65.26 Aligned_cols=148 Identities=22% Similarity=0.212 Sum_probs=87.0
Q ss_pred eeEEEeCC-ceEEEeCCCCCcccc--------CcCEEEEecCChhhhCcHHHHHHHhCCCCC-CCCEEeCCcchHHHHHH
Q 023022 31 ETCIIFPS-LDLAFDIGRCPSRAL--------SQNFLFISHAHMDHIGGLPMYVATRGLYRM-KPPTIIVPSCIKEDVEQ 100 (288)
Q Consensus 31 ~s~~~i~~-~~iLiD~G~~~~~~~--------~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~-~~~~i~~p~~~~~~l~~ 100 (288)
.+++...+ .++++.||+++++.+ +++.||+|=.+++-+||+|.++....-.+. .++.+++|+.....+..
T Consensus 65 ~~~~~~~~~~~~~~n~Geg~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~ 144 (746)
T KOG2121|consen 65 LSVYLFDDRKRFIFNCGEGTQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSA 144 (746)
T ss_pred hhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhhheEeecccHHHhCCCccceeehhhcCCCCcccccCchhHHHHHHH
Confidence 34444444 599999999998642 589999999999999999999876544443 37889999988877765
Q ss_pred HHHhhh--hcCC--CCCc----eE-EEEcCCCCeEEecCCeEEEEEEc--CCcCC--------cceEEEEEecc--cc--
Q 023022 101 LFEVHR--RMDH--SELN----HT-LVGLDVGEEFCMRKDLFVKAFKT--YHVIQ--------SQGYVVYSVKQ--KL-- 157 (288)
Q Consensus 101 ~~~~~~--~~~~--~~~~----~~-~~~l~~g~~~~i~~~~~i~~~~~--~H~~~--------~~g~~i~~~~~--~~-- 157 (288)
...... .+.. ...+ ++ ..++.+-..++. +-.++.++.+ .|.+. .+-|.+.-... ++
T Consensus 145 mr~f~~r~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-~v~k~s~~~l~~~~~~~~sg~~~~~~~~y~~~~~~~~G~f~~ 223 (746)
T KOG2121|consen 145 MRYFVPRSGMVLTLSIDPSAELYNLSEPVRPCVLFSD-EVLKISAINLSPPESPTDSGVKRELVVNYICQLHPIRGKFDV 223 (746)
T ss_pred HHHhhccCCceeecccCCccchhhcccCcccccccCc-cchhhheeecCCcccCCccCChhhheeEEEEecccCCCcccH
Confidence 433221 1100 0000 00 111111111111 1233344433 23322 23444433222 33
Q ss_pred -chhhcCCC-hHHHHHHHhcCceec
Q 023022 158 -KQEYLGLP-GDEIKKLKSSGTEIT 180 (288)
Q Consensus 158 -~~~~~g~~-~~~l~~l~~~G~~i~ 180 (288)
|+..+|+| ||.+.+|++ |+.++
T Consensus 224 ~kA~~lGvp~Gp~~~~L~~-G~~vt 247 (746)
T KOG2121|consen 224 EKAKELGVPKGPLIGKLKS-GESVT 247 (746)
T ss_pred HHHHHhCCCCCcchhhhcC-CCcee
Confidence 77899998 999999995 77665
No 53
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.57 E-value=0.011 Score=55.18 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=49.4
Q ss_pred eEEEEeeecCceeEEEeCCceEEEeCCCCCc-------------cccCcCEEEEecCChhhhCcHHHHHHHhCCCCCCCC
Q 023022 20 YKVEGLSIAGHETCIIFPSLDLAFDIGRCPS-------------RALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPP 86 (288)
Q Consensus 20 ~~v~g~~~~~~~s~~~i~~~~iLiD~G~~~~-------------~~~~i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~ 86 (288)
+.|-|+..+.. +.+.=+.+-|+||+=.... -+..|.+|+-||.|.||++|...++..... ...++
T Consensus 118 YQVRG~DisNI-TfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV-~sGkV 195 (655)
T COG2015 118 YQVRGFDISNI-TFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADV-KSGKV 195 (655)
T ss_pred eEeecccccce-EEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHc-ccCce
Confidence 55555443222 2222223588999865431 123599999999999999999888764432 35578
Q ss_pred EEeCCcchHH
Q 023022 87 TIIVPSCIKE 96 (288)
Q Consensus 87 ~i~~p~~~~~ 96 (288)
.|++|.+..+
T Consensus 196 ~iiAP~GFme 205 (655)
T COG2015 196 QIIAPAGFME 205 (655)
T ss_pred eEecchhHHH
Confidence 8999998754
No 54
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=96.03 E-value=0.073 Score=49.95 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=78.0
Q ss_pred cCEEEEecCChhhhCcHHHHHHHhCCCCCCCCEEeCCcchHHH----HHHHHHhhh----------hcCC--C-----CC
Q 023022 55 QNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKED----VEQLFEVHR----------RMDH--S-----EL 113 (288)
Q Consensus 55 i~~I~iTH~H~DH~~gl~~ll~~~~~~~~~~~~i~~p~~~~~~----l~~~~~~~~----------~~~~--~-----~~ 113 (288)
||.|+||..|. ..|||++-+.-++ .-+||+.+.+... ++.+.+... |... . .+
T Consensus 97 iDvILISNy~~--mlgLPfiTentGF----~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpspl 170 (653)
T KOG1138|consen 97 IDVILISNYMG--MLGLPFITENTGF----FGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPL 170 (653)
T ss_pred eeEEEEcchhh--hcccceeecCCCc----eeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCc
Confidence 89999998874 6788877554443 2368888765331 222222211 1111 0 00
Q ss_pred c-----e----------------EEEEcCCCCeEEecCCeEEEEEEcCCcCCcceEEEEEeccccchhhcCCChHHHHHH
Q 023022 114 N-----H----------------TLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKL 172 (288)
Q Consensus 114 ~-----~----------------~~~~l~~g~~~~i~~~~~i~~~~~~H~~~~~g~~i~~~~~~~~~~~~g~~~~~l~~l 172 (288)
+ . +++.+...+.+.+.+.+.|++...+|..|+.-|.+..+.
T Consensus 171 k~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~n------------------ 232 (653)
T KOG1138|consen 171 KKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPN------------------ 232 (653)
T ss_pred hhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCC------------------
Confidence 0 0 233445678888877899999999999999999997652
Q ss_pred HhcCceecceEeCCeEEEecCCCC-Cccccc-cccccCCCCEEEEe
Q 023022 173 KSSGTEITYTVTTPEVAFTGDTMS-DFIVDE-ANIDVLRARILVME 216 (288)
Q Consensus 173 ~~~G~~i~~~~~~~~i~y~gD~~~-~~~~~~-~~~~~~~~d~li~E 216 (288)
.++.|..+..+ ....+. ..+..+.+|+||.-
T Consensus 233 -------------ek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T 265 (653)
T KOG1138|consen 233 -------------EKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYT 265 (653)
T ss_pred -------------cceEEEecCcccccCCccccccccccccEEEEe
Confidence 36888888765 222222 13467889999874
No 55
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=1.2 Score=39.20 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.6
Q ss_pred CceEEEeCCCCCcc-----ccCcCEEEEecCChhhhCcHHHH
Q 023022 38 SLDLAFDIGRCPSR-----ALSQNFLFISHAHMDHIGGLPMY 74 (288)
Q Consensus 38 ~~~iLiD~G~~~~~-----~~~i~~I~iTH~H~DH~~gl~~l 74 (288)
++.+++|.|.+... +-+|+.+.+||.|.+|.+++..+
T Consensus 104 ~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 104 GDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred CceEEEecCCchhhhcCcChhhcceeEEeccCcccccccccc
Confidence 46889999987332 23699999999999998886533
No 56
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=85.95 E-value=1.2 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.608 Sum_probs=23.9
Q ss_pred cCCCcHHHHHHHHHHcCCCeEEEEecc
Q 023022 232 YGHTHLSEIVEYAEKFENKAILLIHFS 258 (288)
Q Consensus 232 ~~H~~~~~~~~~~~~~~~~~~~l~H~~ 258 (288)
.+|.+.+++.++++..+++++++.|=.
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 579999999999999999999999954
No 57
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=85.71 E-value=0.47 Score=46.53 Aligned_cols=46 Identities=9% Similarity=0.196 Sum_probs=35.3
Q ss_pred eeEEEeCCceEEEeCCCCCc--------cccCcCEEEEecCChhhhCcHHHHHH
Q 023022 31 ETCIIFPSLDLAFDIGRCPS--------RALSQNFLFISHAHMDHIGGLPMYVA 76 (288)
Q Consensus 31 ~s~~~i~~~~iLiD~G~~~~--------~~~~i~~I~iTH~H~DH~~gl~~ll~ 76 (288)
.+.|.+++.+||+|-|..-. +.-+||+|+|||.-.|...|+..|+.
T Consensus 50 aALFavnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 50 AALFAVNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred ceeEeecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 34445656788888886521 22379999999999999999999876
No 58
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=45.06 E-value=1.1e+02 Score=29.79 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred eeeEeceEEEEeeecCc-eeEEE-eC-CceEEEeCCCCCccc---c----------------CcCEEEEecCChhhhCcH
Q 023022 14 GMQLQGYKVEGLSIAGH-ETCII-FP-SLDLAFDIGRCPSRA---L----------------SQNFLFISHAHMDHIGGL 71 (288)
Q Consensus 14 ~~~~~~~~v~g~~~~~~-~s~~~-i~-~~~iLiD~G~~~~~~---~----------------~i~~I~iTH~H~DH~~gl 71 (288)
+.++.++.|.....|-. .+|.+ ++ .+..++++|.-.+.. + ..-++.++|.|.||.+-+
T Consensus 145 ~~ev~gIkf~p~~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rl 224 (668)
T KOG1137|consen 145 TVEVNGIKFWPYHAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRL 224 (668)
T ss_pred ccccCCeEEEeeccchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhh
Confidence 36667777776653322 23444 33 679999999755321 1 357899999999999999
Q ss_pred HHHHHHhCCCCCC-CCEEeCCcchHHHHHHHHHh
Q 023022 72 PMYVATRGLYRMK-PPTIIVPSCIKEDVEQLFEV 104 (288)
Q Consensus 72 ~~ll~~~~~~~~~-~~~i~~p~~~~~~l~~~~~~ 104 (288)
++++...-.++.+ -+++|+...+++.+.-+..+
T Consensus 225 t~vIh~~v~rGGR~L~PvFAlgrAqELllildey 258 (668)
T KOG1137|consen 225 TWVIHSTVPRGGRVLIPVFALGRAQELLLILDEY 258 (668)
T ss_pred hhhHHhhccCCCceEeeeeecchHHHHHHHHHHH
Confidence 9998754333222 35678877777776655544
No 59
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=36.09 E-value=54 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.5
Q ss_pred hcCCCcHHHHHHHHHHcCCCeEEEEeccCCCCh
Q 023022 231 DYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263 (288)
Q Consensus 231 ~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~ 263 (288)
..+-+++..+++++.+.+.+.+-+||.+..|-.
T Consensus 16 a~gitnf~raceva~evgkpeialthssityga 48 (343)
T COG4074 16 ATGITNFKRACEVADEVGKPEIALTHSSITYGA 48 (343)
T ss_pred hhcchHHHHHHHHHHHhCCcceeeeechhhhHH
Confidence 455678999999999999999999999998774
No 60
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=34.88 E-value=43 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHcCCCeEEEEe
Q 023022 233 GHTHLSEIVEYAEKFENKAILLIH 256 (288)
Q Consensus 233 ~H~~~~~~~~~~~~~~~~~~~l~H 256 (288)
.|+++.|+.++++.+++++++.|=
T Consensus 83 eHSSf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 83 EHSSFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred cCCCHHHHHHHHHhcCCcEEEccc
Confidence 499999999999999999998763
No 61
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=28.91 E-value=75 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.0
Q ss_pred hcCCCcHHHHHHHHHHcCCCeEEEEeccCCCCh
Q 023022 231 DYGHTHLSEIVEYAEKFENKAILLIHFSARHKV 263 (288)
Q Consensus 231 ~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~ 263 (288)
..+-+++..+++.+++.+.+.+-+||.+..|-.
T Consensus 16 a~gitnf~ra~eva~~~g~~ei~~thsti~~~a 48 (340)
T TIGR01723 16 AAGITNFMRACEVAKEVGKPEIALTHSSITYGA 48 (340)
T ss_pred hhcchhHHHHHHHHHHhCCcceeeeechHHHHH
Confidence 345678899999999999999999998876663
No 62
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=61 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=15.1
Q ss_pred CeEEEecCCCCCccccccccccCCCCEEE
Q 023022 186 PEVAFTGDTMSDFIVDEANIDVLRARILV 214 (288)
Q Consensus 186 ~~i~y~gD~~~~~~~~~~~~~~~~~d~li 214 (288)
..++|+||.-++ ...++.+|+++
T Consensus 160 e~~fy~GDsvsD------lsaaklsDllF 182 (220)
T COG4359 160 ESIFYCGDSVSD------LSAAKLSDLLF 182 (220)
T ss_pred ceEEEecCCccc------ccHhhhhhhHh
Confidence 469999999874 23345555554
No 63
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=27.89 E-value=2e+02 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=20.9
Q ss_pred CeEEEecCCCC-CccccccccccCCCCEEEE
Q 023022 186 PEVAFTGDTMS-DFIVDEANIDVLRARILVM 215 (288)
Q Consensus 186 ~~i~y~gD~~~-~~~~~~~~~~~~~~d~li~ 215 (288)
.+++..||+.+ ....+...+..-++|++||
T Consensus 82 ~~v~IlaDtsYGaCCVDevaA~hv~aD~iVH 112 (496)
T TIGR00272 82 IKFWVLADTAYSSCCVDEVAAEHVHAEAVVH 112 (496)
T ss_pred ceEEEEeCCcccccccCHHHHhhcCCCEEEE
Confidence 57999999988 2233333334458999999
No 64
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=25.82 E-value=3.4e+02 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=18.6
Q ss_pred CeEEEecCCCC--CccccccccccCCCCEEEE
Q 023022 186 PEVAFTGDTMS--DFIVDEANIDVLRARILVM 215 (288)
Q Consensus 186 ~~i~y~gD~~~--~~~~~~~~~~~~~~d~li~ 215 (288)
..++.+||+.+ +.+.+... ... +|++||
T Consensus 29 ~~v~I~gD~tYGaCcV~D~~a-~~~-~D~iVH 58 (308)
T TIGR03682 29 YEVIISGEPCYGACDLADDEA-LEL-VDLIVH 58 (308)
T ss_pred ceEEEEcCCceeeccCChHHH-Hhc-CCEEEE
Confidence 57999999987 43323222 223 999998
No 65
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=24.48 E-value=1.2e+02 Score=26.52 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=44.9
Q ss_pred CeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCChh
Q 023022 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHKVD 264 (288)
Q Consensus 186 ~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~~~ 264 (288)
|.|++.|..-+....+......+++|+||+..|-..-. ....+...+++.+++.+.+.+-..++++.
T Consensus 159 P~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~------------Paa~~p~~~~~~g~~~i~iN~~~~~~~~~ 225 (250)
T COG0846 159 PDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVY------------PAAGLPELAKRRGAKVIEINLEPTRLDPI 225 (250)
T ss_pred CCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEc------------ChhhhhHHHHhcCCEEEEECCCcccCcch
Confidence 67999999877433444455678999999998855421 22223346778788888888755566543
No 66
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.66 E-value=1.3e+02 Score=25.17 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=39.3
Q ss_pred CeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCC
Q 023022 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSAR 260 (288)
Q Consensus 186 ~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~ 260 (288)
|.|++.|+.-+......+.....++|++|+=.|-..- .....+...+++.+ ..+++.+..+.
T Consensus 132 P~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V------------~pa~~l~~~~~~~g-~~vi~iN~~~~ 193 (206)
T cd01410 132 DTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQV------------TPAANLPLKAARAG-GRLVIVNLQPT 193 (206)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCcee------------hhHHHHHHHHHhcC-CeEEEECCCCC
Confidence 6788889987643233444566789999987765532 23445555566644 56667777663
No 67
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=20.95 E-value=2.2e+02 Score=25.07 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=40.6
Q ss_pred CeEEEecCCCCCccccccccccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEeccCCCC
Q 023022 186 PEVAFTGDTMSDFIVDEANIDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFENKAILLIHFSARHK 262 (288)
Q Consensus 186 ~~i~y~gD~~~~~~~~~~~~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~l~H~~~~~~ 262 (288)
+.+++.|+.-+.............+|++|.=+|-..- .....+...+++.+++.+++.--..+++
T Consensus 176 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V------------~pa~~l~~~a~~~g~~vi~IN~~~t~~~ 240 (271)
T PTZ00409 176 PNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSV------------STATNLCYRAHRKKKKIVEVNISKTYIT 240 (271)
T ss_pred CcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcc------------cCHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 5688889976643334445567789999997664432 3455667777776766555544333433
No 68
>PRK15063 isocitrate lyase; Provisional
Probab=20.58 E-value=1.6e+02 Score=27.76 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=37.3
Q ss_pred cccCCCCEEEEecccCCCCCcHHHHhhcCCCcHHHHHHHHHHcC---CCeEEEEeccCCCC------hhHHHHHHHhCCC
Q 023022 205 IDVLRARILVMESTYVDDSTTVEQARDYGHTHLSEIVEYAEKFE---NKAILLIHFSARHK------VDEIRRAVDAVPA 275 (288)
Q Consensus 205 ~~~~~~d~li~E~t~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~---~~~~~l~H~~~~~~------~~~~~~~~~~~~~ 275 (288)
.+..++|++.+|+.. .+++++.+++++.+ |.+++.+-.+|.++ ++++..+.+++..
T Consensus 273 AYa~GAD~iw~Et~~---------------~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~ 337 (428)
T PRK15063 273 AYAPYADLIWCETST---------------PDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGA 337 (428)
T ss_pred HHhcCCCEEEeCCCC---------------CCHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHH
Confidence 345689999998732 36677777777765 34566666777655 5566666555544
Q ss_pred c
Q 023022 276 P 276 (288)
Q Consensus 276 ~ 276 (288)
-
T Consensus 338 ~ 338 (428)
T PRK15063 338 M 338 (428)
T ss_pred c
Confidence 3
Done!