BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023023
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 26/273 (9%)
Query: 10 KYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRN 69
+Y G I + I K +GF ++GN N R P A+ F ++++ K I R+
Sbjct: 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF-AFKDKYKQIF--LGGVDRH 105
Query: 70 EEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK--SPRQYRGIFHALTTVLR 127
++ L +G AG ++ YP+D R RL K + R++ G+ + +T + +
Sbjct: 106 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165
Query: 128 EEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXX 187
+G R LY+G+ SV G+I Y F VY++ K G++ D + +
Sbjct: 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK---------GMLPDPKNVHIIVSWMIA 216
Query: 188 XXXXXXXXXXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEG 247
YP D +RRRM M G+ A + Y G VD +RK + EG
Sbjct: 217 QTVTAVAGLVSYPFDTVRRRMMMQ-----------SGRKGADIMYTGTVDCWRKIAKDEG 265
Query: 248 FGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280
A +KG N ++ + A V Y+ +K +
Sbjct: 266 PKAFFKGAWSNVLRGMGG-AFVLVLYDEIKKFV 297
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 82 AGACAGIIAMSATYPMDMVRGRLTVQTEK----SPRQYRGIFHALTTVLREEGPRSLYKG 137
AG A I+ +A P++ V+ L VQ + +QY+GI + + +E+G S ++G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 138 WLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELG--VATRLXXXXXXXXXXX 195
L +VI P LNFA + K LG VD + + A L
Sbjct: 73 NLANVIRYFPTQALNFAFKDKYKQIF-----LGGVDRHKQFWRYFAGNLASGGAAGATSL 127
Query: 196 XXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGL 255
YPLD R R+ AA V GK A E+ G+ + K + +G LY+G
Sbjct: 128 CFVYPLDFARTRL-------AADV----GKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 256 VPNSVKVVPSIAIAFVTYEMVKDIL 280
+ ++ A F Y+ K +L
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKGML 201
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 28/208 (13%)
Query: 80 LGAGACAGIIAMSATYPMDMVRGRLTVQTEK-------SPRQYRGIFHALTTVLREEGPR 132
LGAG A IA T+P+D + RL +Q E + QYRG+ + T++R EGPR
Sbjct: 6 LGAGT-AACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 133 SLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXX 192
SLY G + + + + + +Y+S+K + K + G+ +RL
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG--------SEHAGIGSRLLAGSTTGA 116
Query: 193 XXXXXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALY 252
P DV++ R Q A G G+ Y V+A++ R EG L+
Sbjct: 117 LAVAVAQPTDVVKVRFQ-------AQARAGGGR-----RYQSTVEAYKTIAREEGIRGLW 164
Query: 253 KGLVPNSVKVVPSIAIAFVTYEMVKDIL 280
KG PN + VTY+++KD L
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTL 192
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 10 KYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRN 69
+Y T++ K I + EG RGL+KG N AR + + +Y+ K L T +
Sbjct: 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLI-KDTLLKANLMTDD 201
Query: 70 EEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALTTVLREE 129
T GAG C +IA P+D+V+ R + QY H T+LR+E
Sbjct: 202 LPCHFTSAF--GAGFCTTVIAS----PVDVVKTRYM---NSALGQYHSAGHCALTMLRKE 252
Query: 130 GPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKS 166
GPR+ YKG++PS + + + + F YE LK L+ +
Sbjct: 253 GPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 32/279 (11%)
Query: 3 VQNPHSIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWL 62
V+ S +Y G + + + ++EG R L+ G R + ++V+ Y+ +
Sbjct: 39 VRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQ----F 94
Query: 63 YRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSP-RQYRGIFHA 121
Y + + E A + RL AG+ G +A++ P D+V+ R Q R+Y+ A
Sbjct: 95 YTKGS--EHAGIGS--RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEA 150
Query: 122 LTTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVA 181
T+ REEG R L+KG P+V Y+ +KD L+K+ + DD +
Sbjct: 151 YKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM--TDD-----LP 203
Query: 182 TRLXXXXXXXXXXXXXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRK 241
P+DV++ R A +Y+
Sbjct: 204 CHFTSAFGAGFCTTVIASPVDVVKTRYM----------------NSALGQYHSAGHCALT 247
Query: 242 TVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280
+R EG A YKG +P+ +++ + FVTYE +K L
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 27 FRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACA 86
F+ + + +G N ++P YE K ++WL RR+T EA P + C
Sbjct: 407 FKVISRTSGNNARTVMP--------YESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHCH 458
Query: 87 GII 89
+I
Sbjct: 459 NLI 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,192,954
Number of Sequences: 62578
Number of extensions: 319819
Number of successful extensions: 683
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 10
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)