Query 023023
Match_columns 288
No_of_seqs 160 out of 1703
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.6E-51 1.2E-55 349.2 14.9 253 1-284 29-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.7E-50 9.1E-55 343.0 15.4 248 9-280 48-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 5.5E-37 1.9E-41 260.9 18.4 196 74-283 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3E-36 1E-40 256.9 15.0 185 79-283 4-195 (303)
5 2acm_A Mucin-1; auto-catalytic 28.8 11 0.00039 22.4 -0.1 19 13-31 41-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 23.7 35 0.0012 21.9 1.5 34 247-280 33-66 (81)
7 3f2e_A SIRV coat protein; four 20.9 44 0.0015 21.1 1.5 34 230-263 6-43 (100)
8 3cx5_H Cytochrome B-C1 complex 16.9 1.1E+02 0.0036 20.3 2.7 35 246-280 42-76 (93)
9 1pp9_G Ubiquinol-cytochrome C 14.3 72 0.0025 20.5 1.4 34 247-280 33-66 (81)
10 2bnk_A Early protein GP16.7; D 12.6 1.8E+02 0.0062 17.1 2.6 46 196-255 20-65 (67)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-51 Score=349.20 Aligned_cols=253 Identities=26% Similarity=0.386 Sum_probs=221.5
Q ss_pred CCCCCCC--------CCCCCcHHHHHHHHHHhcCcccccccchhhhhccccccceehhhhHHHHHhHHHHHhhccccccc
Q 023023 1 MQVQNPH--------SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRNEEA 72 (288)
Q Consensus 1 lQ~q~~~--------~~~~~~~~~~~~~i~~~eG~~~l~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (288)
||+|... ..+|+++++++++|+++||++|||||+.+++++.++..+++|.+|+.+++.+. .. ..
T Consensus 29 lQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~-------~~-~~ 100 (303)
T 2lck_A 29 LQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT-------KG-SE 100 (303)
T ss_dssp SSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHS-------CC-CS
T ss_pred HHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh-------cC-Cc
Confidence 6777532 35799999999999999999999999999999999999999999999965432 11 01
Q ss_pred ccchHHHHHHHHHHHHhHhhhcchHHHHHHHHhcccCC-CCCccCcHHHHHHHHHhhcCccccccChhhhhhhhchhhhH
Q 023023 73 ELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK-SPRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYVGL 151 (288)
Q Consensus 73 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 151 (288)
..+....+++|++||+++.++++|+|++|+|+|++... ....|++.++++++++++||++|||+|+.+++++.++..++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 36678899999999999999999999999999998643 33468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccccccccccCCCCcccccc
Q 023023 152 NFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLE 231 (288)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+|.+||.+++.+.... ....+....+++|++||++++++++|+|+||+|+|.+.. ..
T Consensus 181 ~f~~ye~~k~~l~~~~-------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----------------~~ 237 (303)
T 2lck_A 181 ELVTYDLIKDTLLKAN-------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----------------GQ 237 (303)
T ss_dssp HHHHHHHHHHTTTTTT-------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----------------SS
T ss_pred HHHHHHHHHHHHHhcc-------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----------------cc
Confidence 9999999999775431 113346678999999999999999999999999998752 25
Q ss_pred cCcHHHHHHHHHhhhccccccccchhhhhhhhhhhhHHHHHHHHHHHHhcccc
Q 023023 232 YNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEM 284 (288)
Q Consensus 232 ~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~~~ 284 (288)
|.++++|+++++++||++|||||+.|+++|.+|..+++|.+||.+|+++....
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999886543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.7e-50 Score=343.02 Aligned_cols=248 Identities=29% Similarity=0.485 Sum_probs=208.2
Q ss_pred CCCCcHHHHHHHHHHhcCcccccccchhhhhccccccceehhhhHHHHHhHHHHHhhcccccccccchHHHHHHHHHHHH
Q 023023 9 IKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGI 88 (288)
Q Consensus 9 ~~~~~~~~~~~~i~~~eG~~~l~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~ 88 (288)
.+|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+++.++.. .+.......+....+++|++|++
T Consensus 48 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~~~~~~ag~~ag~ 124 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG---VDRHKQFWRYFAGNLASGGAAGA 124 (297)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCcccchHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999996544321 11111111245678999999999
Q ss_pred hHhhhcchHHHHHHHHhcccCC--CCCccCcHHHHHHHHHhhcCccccccChhhhhhhhchhhhHHHHHHHHHHHHHHhh
Q 023023 89 IAMSATYPMDMVRGRLTVQTEK--SPRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKS 166 (288)
Q Consensus 89 ~~~~i~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (288)
++.++++|+|+||+|+|++... ....|+++++++++++++||++|||+|+.+++++.++..+++|.+||.+++.+.+.
T Consensus 125 ~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998542 23568999999999999999999999999999999999999999999999865322
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccccccccccCCCCcccccccCcHHHHHHHHHhhh
Q 023023 167 KALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHE 246 (288)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e 246 (288)
...+....+++|.++|++++++++|+|+||+|+|.+.... .....|.++++|+++++++|
T Consensus 205 ---------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-----------~~~~~y~~~~~~~~~i~~~e 264 (297)
T 1okc_A 205 ---------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-----------GADIMYTGTVDCWRKIAKDE 264 (297)
T ss_dssp ---------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-----------GGGCSCSSHHHHHHHHHHHH
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-----------CCCCCCCCHHHHHHHHHHHc
Confidence 1234677889999999999999999999999999875321 11247899999999999999
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHHHHHHHHh
Q 023023 247 GFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280 (288)
Q Consensus 247 G~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 280 (288)
|++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 265 G~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 265 GPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999999996 56799999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.5e-37 Score=260.88 Aligned_cols=196 Identities=29% Similarity=0.410 Sum_probs=167.6
Q ss_pred cchHHHHHHHHHHHHhHhhhcchHHHHHHHHhcccCC----CCCccCcHHHHHHHHHhhcCccccccChhhhhhhhchhh
Q 023023 74 LTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK----SPRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYV 149 (288)
Q Consensus 74 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 149 (288)
.+....+++|++||+++.++++|+|++|+|+|++... ....|+++++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 4567889999999999999999999999999998642 124689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccccccccccCCCCcccc
Q 023023 150 GLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKAT 229 (288)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~ 229 (288)
+++|.+||.+++.+..... .++.........+++|.+||++++++++|+|+||+|+|++..... ..
T Consensus 85 ~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~-----------~~ 150 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA-----------AQ 150 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-----------TT
T ss_pred HHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC-----------cC
Confidence 9999999999996543211 011112345678999999999999999999999999999753211 12
Q ss_pred cccCcHHHHHHHHHhhhccccccccchhhhhhhhhhhhHHHHHHHHHHHHhccc
Q 023023 230 LEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVE 283 (288)
Q Consensus 230 ~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 283 (288)
..|.++++++++++++||++|||||+.++++|.+|..+++|.+||.+|+.+...
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred cCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 478999999999999999999999999999999999999999999999987643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3e-36 Score=256.89 Aligned_cols=185 Identities=31% Similarity=0.573 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhHhhhcchHHHHHHHHhcccCCC-------CCccCcHHHHHHHHHhhcCccccccChhhhhhhhchhhhH
Q 023023 79 RLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS-------PRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYVGL 151 (288)
Q Consensus 79 ~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~-------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 151 (288)
.+++|++|++++.++++|+|++|+|+|++.... ...|+++++++++++++||++|||+|+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999986532 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccccccccccCCCCcccccc
Q 023023 152 NFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLE 231 (288)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+|.+||.+|+.+.... + ..+....+++|.+||+++.++++|+|+||+|+|++.... ....
T Consensus 84 ~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------~~~~ 143 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG------------GGRR 143 (303)
T ss_dssp TTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC------------CSSS
T ss_pred HHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC------------CCCC
Confidence 9999999999875321 1 245778899999999999999999999999999985321 1237
Q ss_pred cCcHHHHHHHHHhhhccccccccchhhhhhhhhhhhHHHHHHHHHHHHhccc
Q 023023 232 YNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVE 283 (288)
Q Consensus 232 ~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 283 (288)
|.+.++++++|+++||++|||||+.++++|.+|..+++|.+||.+|+.+...
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999988653
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=28.77 E-value=11 Score=22.42 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHhcCccccc
Q 023023 13 GTIQGLKYIWKSEGFRGLF 31 (288)
Q Consensus 13 ~~~~~~~~i~~~eG~~~l~ 31 (288)
++.+++..|++++|+.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5788999999999999886
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.69 E-value=35 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=26.1
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHHHHHHHHh
Q 023023 247 GFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280 (288)
Q Consensus 247 G~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 280 (288)
|+...+|-+...++..+|..++.+.+|+..++..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4555555566678889999999999998877654
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=20.88 E-value=44 Score=21.05 Aligned_cols=34 Identities=12% Similarity=0.368 Sum_probs=25.7
Q ss_pred cccCcHHHHHHHHHhhhcc----ccccccchhhhhhhh
Q 023023 230 LEYNGMVDAFRKTVRHEGF----GALYKGLVPNSVKVV 263 (288)
Q Consensus 230 ~~~~~~~~~~~~i~~~eG~----~~ly~G~~~~~~~~~ 263 (288)
+++.++.+-+..++.+-|+ +..|.|+.....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 5777888888888888887 558999998777764
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=16.90 E-value=1.1e+02 Score=20.27 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=28.7
Q ss_pred hccccccccchhhhhhhhhhhhHHHHHHHHHHHHh
Q 023023 246 EGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280 (288)
Q Consensus 246 eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 280 (288)
.|+...+|-+...++..+|..++.+.+|+..++..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 47777888888888899999999999998776654
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.25 E-value=72 Score=20.45 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=26.6
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHHHHHHHHh
Q 023023 247 GFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 280 (288)
Q Consensus 247 G~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 280 (288)
|+...+|-+...++..+|..++.+.+|+..++..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 5555666677777888999999999998877655
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=12.57 E-value=1.8e+02 Score=17.13 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=30.0
Q ss_pred hhcccHHHHHHHHHhcccccccccccCCCCcccccccCcHHHHHHHHHhhhccccccccc
Q 023023 196 TVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGL 255 (288)
Q Consensus 196 ~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~ 255 (288)
-+--|.|.|---. .+..... ...-++...-|.-|+-|.-+-+|||.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te-------------~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSE-------------QEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCS-------------HHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CCcCcHHHHHHHH-HHhhhhH-------------HHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 4678999887544 2222211 13345666778888888889999996
Done!