Query 023024
Match_columns 288
No_of_seqs 170 out of 1221
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00147 rpl4 ribosomal protei 100.0 1.7E-73 3.6E-78 514.3 19.9 206 53-261 8-214 (215)
2 PRK05319 rplD 50S ribosomal pr 100.0 3.6E-71 7.9E-76 496.0 20.0 204 53-261 2-205 (205)
3 PRK14547 rplD 50S ribosomal pr 100.0 2.2E-69 4.8E-74 506.6 18.9 209 50-262 1-212 (298)
4 PRK14907 rplD 50S ribosomal pr 100.0 1.8E-68 3.9E-73 497.9 18.1 191 66-261 103-295 (295)
5 PF00573 Ribosomal_L4: Ribosom 100.0 4.3E-68 9.3E-73 471.8 15.5 191 67-259 1-192 (192)
6 KOG1624 Mitochondrial/chloropl 100.0 5.6E-63 1.2E-67 454.2 18.0 267 3-276 5-278 (290)
7 COG0088 RplD Ribosomal protein 100.0 4E-63 8.6E-68 446.4 15.3 209 50-262 1-212 (214)
8 PRK04042 rpl4lp 50S ribosomal 100.0 1.1E-62 2.4E-67 452.4 18.2 199 53-260 2-253 (254)
9 TIGR03672 rpl4p_arch 50S ribos 100.0 2E-61 4.4E-66 443.2 18.2 198 53-259 2-251 (251)
10 PLN00185 60S ribosomal protein 100.0 5.5E-54 1.2E-58 413.6 19.3 206 52-262 7-271 (405)
11 PTZ00428 60S ribosomal protein 100.0 6E-51 1.3E-55 390.9 18.5 201 52-262 5-265 (381)
12 KOG1475 Ribosomal protein RPL1 100.0 1.8E-31 4E-36 248.0 10.9 207 51-263 4-266 (363)
13 PTZ00428 60S ribosomal protein 93.9 0.051 1.1E-06 53.7 3.5 54 74-127 31-90 (381)
14 COG1122 CbiO ABC-type cobalt t 62.3 9.1 0.0002 35.4 3.6 57 155-214 144-200 (235)
15 PF03266 NTPase_1: NTPase; In 57.0 12 0.00026 32.6 3.3 65 169-236 94-159 (168)
16 COG1136 SalX ABC-type antimicr 50.4 27 0.00059 32.3 4.7 55 155-212 148-202 (226)
17 PRK13634 cbiO cobalt transport 47.8 27 0.00059 32.5 4.4 64 145-214 144-207 (290)
18 PRK13651 cobalt transporter AT 47.0 37 0.00079 32.2 5.1 56 155-214 171-226 (305)
19 PF13558 SbcCD_C: Putative exo 45.8 46 0.001 25.8 4.7 42 156-197 42-90 (90)
20 PHA02324 hypothetical protein 44.3 16 0.00035 25.6 1.6 27 93-119 19-46 (47)
21 PRK11629 lolD lipoprotein tran 43.0 42 0.00091 29.8 4.6 56 155-213 151-206 (233)
22 TIGR01166 cbiO cobalt transpor 43.0 51 0.0011 28.3 5.0 55 155-213 133-187 (190)
23 cd03235 ABC_Metallic_Cations A 41.8 55 0.0012 28.5 5.2 54 155-212 138-191 (213)
24 PRK13637 cbiO cobalt transport 41.6 40 0.00087 31.4 4.4 57 155-214 150-206 (287)
25 cd03293 ABC_NrtD_SsuB_transpor 40.5 49 0.0011 29.1 4.7 55 155-212 137-191 (220)
26 cd03221 ABCF_EF-3 ABCF_EF-3 E 40.2 69 0.0015 26.6 5.2 51 155-212 76-126 (144)
27 cd03213 ABCG_EPDR ABCG transpo 39.6 75 0.0016 27.6 5.6 54 156-213 118-171 (194)
28 PRK13640 cbiO cobalt transport 39.4 44 0.00095 31.0 4.3 57 155-214 149-205 (282)
29 PRK13646 cbiO cobalt transport 39.3 49 0.0011 30.7 4.6 56 155-213 151-206 (286)
30 KOG0333 U5 snRNP-like RNA heli 38.5 77 0.0017 33.4 6.2 104 109-223 446-565 (673)
31 PF13514 AAA_27: AAA domain 38.4 85 0.0018 35.1 7.0 82 136-224 1017-1101(1111)
32 cd03223 ABCD_peroxisomal_ALDP 38.2 76 0.0016 26.9 5.3 51 155-212 97-147 (166)
33 PRK13643 cbiO cobalt transport 37.8 62 0.0013 30.1 5.1 55 155-213 150-204 (288)
34 cd03255 ABC_MJ0796_Lo1CDE_FtsE 37.6 49 0.0011 28.9 4.2 56 155-213 146-201 (218)
35 cd03266 ABC_NatA_sodium_export 37.5 51 0.0011 28.8 4.2 54 155-212 142-195 (218)
36 cd03256 ABC_PhnC_transporter A 37.4 59 0.0013 28.8 4.7 55 155-212 150-204 (241)
37 PRK11308 dppF dipeptide transp 37.4 43 0.00093 32.1 4.0 55 155-212 160-214 (327)
38 cd03301 ABC_MalK_N The N-termi 37.4 51 0.0011 28.7 4.2 55 155-212 136-190 (213)
39 cd03259 ABC_Carb_Solutes_like 37.2 43 0.00093 29.2 3.7 55 155-212 136-190 (213)
40 TIGR00960 3a0501s02 Type II (G 37.0 58 0.0013 28.5 4.5 54 155-212 144-197 (216)
41 PRK10584 putative ABC transpor 36.9 63 0.0014 28.5 4.8 55 155-212 152-206 (228)
42 TIGR02211 LolD_lipo_ex lipopro 36.8 51 0.0011 28.9 4.1 54 156-212 148-201 (221)
43 TIGR01978 sufC FeS assembly AT 36.7 65 0.0014 28.5 4.9 54 155-212 150-203 (243)
44 PRK13631 cbiO cobalt transport 36.4 58 0.0012 31.1 4.7 54 155-212 182-235 (320)
45 PRK11022 dppD dipeptide transp 36.3 52 0.0011 31.4 4.4 56 156-214 160-215 (326)
46 PRK10575 iron-hydroxamate tran 35.9 54 0.0012 29.9 4.3 55 155-212 153-207 (265)
47 cd03257 ABC_NikE_OppD_transpor 35.8 58 0.0013 28.5 4.4 55 155-212 151-205 (228)
48 cd03265 ABC_DrrA DrrA is the A 35.7 59 0.0013 28.6 4.4 56 155-213 137-192 (220)
49 cd03267 ABC_NatA_like Similar 35.7 73 0.0016 28.5 5.0 41 156-199 160-200 (236)
50 cd03296 ABC_CysA_sulfate_impor 35.7 48 0.001 29.6 3.8 55 155-212 142-196 (239)
51 cd03247 ABCC_cytochrome_bd The 35.5 88 0.0019 26.6 5.3 54 155-213 104-157 (178)
52 KOG1832 HIV-1 Vpr-binding prot 35.3 17 0.00038 40.2 1.0 23 130-153 1169-1194(1516)
53 PRK13645 cbiO cobalt transport 35.3 63 0.0014 29.9 4.7 55 155-212 156-210 (289)
54 cd03234 ABCG_White The White s 35.3 98 0.0021 27.3 5.8 55 155-213 149-203 (226)
55 TIGR01189 ccmA heme ABC export 35.1 78 0.0017 27.3 5.0 41 155-198 133-173 (198)
56 cd03261 ABC_Org_Solvent_Resist 35.0 60 0.0013 28.8 4.4 55 155-212 142-196 (235)
57 cd03253 ABCC_ATM1_transporter 34.8 79 0.0017 27.9 5.1 42 155-199 143-184 (236)
58 PRK13642 cbiO cobalt transport 34.8 55 0.0012 30.2 4.2 57 155-214 146-202 (277)
59 PRK13539 cytochrome c biogenes 34.8 70 0.0015 27.9 4.7 54 155-212 133-186 (207)
60 cd03231 ABC_CcmA_heme_exporter 34.7 94 0.002 27.0 5.5 41 155-198 131-171 (201)
61 PRK10247 putative ABC transpor 34.6 67 0.0014 28.5 4.6 55 155-212 143-197 (225)
62 cd03230 ABC_DR_subfamily_A Thi 34.5 62 0.0014 27.4 4.2 40 156-198 102-141 (173)
63 TIGR03608 L_ocin_972_ABC putat 34.5 79 0.0017 27.2 4.9 54 155-212 140-193 (206)
64 PRK15079 oligopeptide ABC tran 34.4 51 0.0011 31.7 4.0 56 155-213 167-222 (331)
65 cd03237 ABC_RNaseL_inhibitor_d 34.4 55 0.0012 29.9 4.1 41 155-198 121-161 (246)
66 cd03298 ABC_ThiQ_thiamine_tran 34.4 72 0.0016 27.7 4.7 41 155-198 134-174 (211)
67 KOG1832 HIV-1 Vpr-binding prot 34.4 14 0.00029 41.0 0.1 39 212-250 1333-1379(1516)
68 PRK13647 cbiO cobalt transport 34.2 70 0.0015 29.5 4.8 55 155-213 144-198 (274)
69 PRK14265 phosphate ABC transpo 34.1 78 0.0017 29.2 5.1 53 155-212 167-219 (274)
70 PRK14245 phosphate ABC transpo 34.0 90 0.0019 28.0 5.4 53 155-212 152-204 (250)
71 PRK14249 phosphate ABC transpo 33.9 78 0.0017 28.4 5.0 53 155-212 153-205 (251)
72 cd03299 ABC_ModC_like Archeal 33.9 61 0.0013 29.0 4.2 55 155-212 135-189 (235)
73 PRK13636 cbiO cobalt transport 33.8 60 0.0013 30.1 4.3 56 155-213 147-202 (283)
74 cd03214 ABC_Iron-Siderophores_ 33.8 85 0.0018 26.8 5.0 41 155-198 103-143 (180)
75 TIGR01184 ntrCD nitrate transp 33.7 63 0.0014 28.8 4.3 55 155-212 120-174 (230)
76 cd03240 ABC_Rad50 The catalyti 33.7 1.1E+02 0.0023 27.1 5.7 55 158-212 126-182 (204)
77 cd03369 ABCC_NFT1 Domain 2 of 33.7 1.1E+02 0.0023 26.6 5.6 54 154-212 130-183 (207)
78 PRK13652 cbiO cobalt transport 33.7 70 0.0015 29.5 4.7 55 155-212 143-197 (277)
79 PRK10253 iron-enterobactin tra 33.5 77 0.0017 28.9 4.9 55 155-212 149-203 (265)
80 cd03232 ABC_PDR_domain2 The pl 33.4 1E+02 0.0022 26.6 5.5 54 156-213 115-168 (192)
81 COG1121 ZnuC ABC-type Mn/Zn tr 33.4 69 0.0015 30.2 4.6 84 129-214 89-200 (254)
82 PRK15093 antimicrobial peptide 33.2 58 0.0012 31.1 4.2 55 155-212 164-218 (330)
83 PRK11248 tauB taurine transpor 33.1 60 0.0013 29.6 4.1 41 155-198 134-174 (255)
84 cd03258 ABC_MetN_methionine_tr 32.9 56 0.0012 28.9 3.8 41 155-198 146-186 (233)
85 TIGR02673 FtsE cell division A 32.9 73 0.0016 27.7 4.5 54 155-212 143-196 (214)
86 cd03251 ABCC_MsbA MsbA is an e 32.9 95 0.0021 27.4 5.3 53 155-212 144-196 (234)
87 cd03273 ABC_SMC2_euk Eukaryoti 32.7 1.4E+02 0.0031 26.8 6.5 70 155-228 172-242 (251)
88 PRK14242 phosphate transporter 32.6 87 0.0019 28.1 5.0 53 155-212 155-207 (253)
89 cd03228 ABCC_MRP_Like The MRP 32.6 1.5E+02 0.0033 24.9 6.3 42 155-199 102-143 (171)
90 cd03260 ABC_PstB_phosphate_tra 32.5 96 0.0021 27.3 5.2 53 155-212 147-199 (227)
91 PRK13648 cbiO cobalt transport 32.5 79 0.0017 28.9 4.8 56 155-213 148-203 (269)
92 cd03233 ABC_PDR_domain1 The pl 32.5 99 0.0022 27.0 5.3 41 155-198 124-164 (202)
93 TIGR03864 PQQ_ABC_ATP ABC tran 32.4 66 0.0014 28.6 4.2 41 155-198 138-178 (236)
94 cd03225 ABC_cobalt_CbiO_domain 32.4 66 0.0014 27.9 4.1 54 155-212 140-193 (211)
95 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 32.4 94 0.002 27.6 5.2 53 156-212 149-201 (224)
96 cd03219 ABC_Mj1267_LivG_branch 32.4 85 0.0018 27.7 4.9 54 155-212 149-202 (236)
97 cd03300 ABC_PotA_N PotA is an 32.4 60 0.0013 28.9 3.9 55 155-212 136-190 (232)
98 cd03218 ABC_YhbG The ABC trans 32.3 74 0.0016 28.0 4.5 41 155-198 139-179 (232)
99 TIGR02314 ABC_MetN D-methionin 32.2 71 0.0015 31.0 4.6 55 156-213 147-201 (343)
100 PRK09984 phosphonate/organopho 32.1 72 0.0016 28.9 4.4 41 155-198 158-198 (262)
101 PRK13548 hmuV hemin importer A 32.1 74 0.0016 28.9 4.5 44 155-198 140-186 (258)
102 PRK13650 cbiO cobalt transport 32.0 66 0.0014 29.7 4.2 57 155-214 146-202 (279)
103 COG1618 Predicted nucleotide k 31.6 3.9E+02 0.0084 24.2 8.7 84 149-236 79-165 (179)
104 PRK14259 phosphate ABC transpo 31.5 1E+02 0.0022 28.3 5.4 53 155-212 160-212 (269)
105 cd03249 ABC_MTABC3_MDL1_MDL2 M 31.4 1E+02 0.0023 27.2 5.3 53 155-212 145-197 (238)
106 PRK11264 putative amino-acid A 31.2 87 0.0019 28.0 4.8 54 155-212 150-203 (250)
107 PF04931 DNA_pol_phi: DNA poly 31.2 30 0.00065 37.2 2.0 14 248-261 620-633 (784)
108 PRK09473 oppD oligopeptide tra 31.1 61 0.0013 31.0 4.0 55 156-213 168-222 (330)
109 PRK13635 cbiO cobalt transport 31.0 71 0.0015 29.6 4.3 56 155-213 146-201 (279)
110 PRK14239 phosphate transporter 30.8 82 0.0018 28.2 4.6 53 155-212 154-206 (252)
111 cd03226 ABC_cobalt_CbiO_domain 30.8 1.1E+02 0.0023 26.6 5.1 54 155-212 132-185 (205)
112 TIGR01277 thiQ thiamine ABC tr 30.7 82 0.0018 27.5 4.4 41 155-198 134-174 (213)
113 PRK13538 cytochrome c biogenes 30.7 88 0.0019 27.2 4.6 41 155-198 135-175 (204)
114 cd03246 ABCC_Protease_Secretio 30.3 1.1E+02 0.0023 26.0 5.0 53 156-212 103-155 (173)
115 COG4098 comFA Superfamily II D 30.2 2.3E+02 0.0051 28.6 7.7 109 146-262 280-400 (441)
116 PRK14243 phosphate transporter 30.0 1.3E+02 0.0028 27.5 5.8 53 155-212 157-209 (264)
117 TIGR02315 ABC_phnC phosphonate 30.0 77 0.0017 28.1 4.2 41 155-198 151-191 (243)
118 cd03264 ABC_drug_resistance_li 29.9 92 0.002 27.1 4.6 53 155-212 136-188 (211)
119 cd03254 ABCC_Glucan_exporter_l 29.8 1.1E+02 0.0024 26.8 5.2 53 155-212 145-197 (229)
120 PRK09544 znuC high-affinity zi 29.7 80 0.0017 28.8 4.3 55 155-212 126-180 (251)
121 cd03294 ABC_Pro_Gly_Bertaine T 29.7 76 0.0017 29.1 4.2 55 155-212 166-220 (269)
122 TIGR03873 F420-0_ABC_ATP propo 29.7 93 0.002 28.1 4.7 42 155-199 143-184 (256)
123 PF10446 DUF2457: Protein of u 29.6 19 0.00042 36.6 0.2 12 231-242 22-33 (458)
124 PRK10771 thiQ thiamine transpo 29.5 85 0.0018 27.8 4.4 41 155-198 135-175 (232)
125 PRK13543 cytochrome c biogenes 29.4 1E+02 0.0022 27.1 4.8 55 155-213 143-197 (214)
126 TIGR01187 potA spermidine/putr 29.2 79 0.0017 30.1 4.4 56 155-213 106-161 (325)
127 PRK14250 phosphate ABC transpo 29.0 1.1E+02 0.0023 27.5 4.9 55 155-212 137-191 (241)
128 cd03269 ABC_putative_ATPase Th 28.7 91 0.002 27.1 4.4 41 155-198 134-174 (210)
129 cd03215 ABC_Carb_Monos_II This 28.7 1.1E+02 0.0025 26.1 4.9 40 156-198 111-150 (182)
130 cd03292 ABC_FtsE_transporter F 28.6 98 0.0021 26.8 4.5 41 155-198 142-182 (214)
131 PRK13638 cbiO cobalt transport 28.3 95 0.0021 28.4 4.6 54 155-212 142-195 (271)
132 PF06524 NOA36: NOA36 protein; 28.3 20 0.00043 34.3 0.0 12 132-143 135-146 (314)
133 TIGR02769 nickel_nikE nickel i 28.2 1E+02 0.0022 28.1 4.8 55 155-212 156-210 (265)
134 PRK14237 phosphate transporter 28.0 1.1E+02 0.0024 27.9 5.0 53 155-212 169-221 (267)
135 cd03297 ABC_ModC_molybdenum_tr 28.0 76 0.0016 27.7 3.7 55 155-212 137-191 (214)
136 PRK11831 putative ABC transpor 28.0 85 0.0018 28.7 4.2 54 156-212 150-203 (269)
137 PRK11153 metN DL-methionine tr 27.9 81 0.0017 30.3 4.2 55 155-212 146-200 (343)
138 cd03272 ABC_SMC3_euk Eukaryoti 27.9 1.6E+02 0.0034 26.1 5.8 62 145-212 157-219 (243)
139 PRK10619 histidine/lysine/argi 27.8 1.1E+02 0.0023 27.7 4.8 54 155-212 158-211 (257)
140 PRK15056 manganese/iron transp 27.7 1.1E+02 0.0023 28.1 4.8 54 155-212 148-201 (272)
141 cd03295 ABC_OpuCA_Osmoprotecti 27.7 75 0.0016 28.4 3.7 41 155-198 141-181 (242)
142 cd03245 ABCC_bacteriocin_expor 27.6 1.4E+02 0.003 26.1 5.3 54 155-213 146-199 (220)
143 PRK13632 cbiO cobalt transport 27.6 1E+02 0.0022 28.3 4.6 56 155-213 148-203 (271)
144 cd03252 ABCC_Hemolysin The ABC 27.6 1.4E+02 0.0031 26.4 5.5 52 156-212 145-196 (237)
145 PRK09580 sufC cysteine desulfu 27.5 1.2E+02 0.0027 26.9 5.1 54 155-212 151-204 (248)
146 cd03229 ABC_Class3 This class 27.5 1E+02 0.0022 26.3 4.3 41 155-198 106-146 (178)
147 PRK11432 fbpC ferric transport 27.4 75 0.0016 30.8 3.9 58 155-215 142-199 (351)
148 PRK09493 glnQ glutamine ABC tr 27.4 91 0.002 27.7 4.2 55 155-213 142-196 (240)
149 PRK11000 maltose/maltodextrin 27.4 71 0.0015 31.1 3.7 56 155-213 139-194 (369)
150 PRK10908 cell division protein 27.2 1.1E+02 0.0023 26.9 4.6 41 155-198 143-183 (222)
151 cd03216 ABC_Carb_Monos_I This 27.1 1.2E+02 0.0027 25.5 4.8 42 155-199 88-129 (163)
152 PRK11614 livF leucine/isoleuci 27.1 1.1E+02 0.0024 27.1 4.7 41 155-198 143-183 (237)
153 TIGR02770 nickel_nikD nickel i 27.0 81 0.0017 28.0 3.8 41 155-198 131-171 (230)
154 PRK14238 phosphate transporter 27.0 1.4E+02 0.0029 27.5 5.4 53 155-212 173-225 (271)
155 cd03224 ABC_TM1139_LivF_branch 27.0 97 0.0021 27.0 4.2 54 155-212 138-191 (222)
156 PRK11300 livG leucine/isoleuci 27.0 1E+02 0.0022 27.7 4.4 41 155-198 159-199 (255)
157 PRK13641 cbiO cobalt transport 26.9 1.2E+02 0.0026 28.2 5.0 61 145-212 144-204 (287)
158 cd03268 ABC_BcrA_bacitracin_re 26.8 94 0.002 26.9 4.1 41 155-198 132-172 (208)
159 TIGR03740 galliderm_ABC gallid 26.7 1E+02 0.0022 27.1 4.4 53 156-212 131-183 (223)
160 TIGR02323 CP_lyasePhnK phospho 26.7 89 0.0019 28.0 4.0 41 155-198 154-194 (253)
161 PRK14248 phosphate ABC transpo 26.7 1.1E+02 0.0025 27.8 4.8 53 155-212 170-222 (268)
162 PRK14273 phosphate ABC transpo 26.6 1.3E+02 0.0027 27.1 5.0 53 155-212 156-208 (254)
163 COG3638 ABC-type phosphate/pho 26.6 1.8E+02 0.0038 27.7 6.0 103 145-262 114-246 (258)
164 PRK13644 cbiO cobalt transport 26.4 1.1E+02 0.0024 28.2 4.7 55 155-213 142-196 (274)
165 PRK10851 sulfate/thiosulfate t 26.4 90 0.0019 30.3 4.2 56 155-213 142-197 (353)
166 TIGR03415 ABC_choXWV_ATP choli 26.4 1.1E+02 0.0023 30.4 4.8 58 155-215 170-227 (382)
167 cd03263 ABC_subfamily_A The AB 26.3 1.7E+02 0.0037 25.5 5.7 53 155-212 139-191 (220)
168 PF09880 DUF2107: Predicted me 26.3 20 0.00044 27.9 -0.2 24 137-160 14-38 (76)
169 TIGR00968 3a0106s01 sulfate AB 26.2 96 0.0021 27.7 4.1 55 155-212 136-190 (237)
170 TIGR03258 PhnT 2-aminoethylpho 25.9 87 0.0019 30.6 4.1 58 155-215 143-201 (362)
171 PRK14258 phosphate ABC transpo 25.9 1E+02 0.0023 27.9 4.4 55 155-212 156-210 (261)
172 PRK14241 phosphate transporter 25.9 1.3E+02 0.0027 27.3 4.9 53 155-212 154-206 (258)
173 PF06144 DNA_pol3_delta: DNA p 25.8 2E+02 0.0044 23.8 5.8 21 243-263 139-159 (172)
174 PRK14240 phosphate transporter 25.7 1.4E+02 0.003 26.7 5.1 53 155-212 152-204 (250)
175 TIGR02142 modC_ABC molybdenum 25.6 1E+02 0.0022 29.7 4.4 56 155-213 137-192 (354)
176 PRK11247 ssuB aliphatic sulfon 25.5 1.1E+02 0.0025 28.0 4.5 55 155-212 139-193 (257)
177 TIGR03410 urea_trans_UrtE urea 25.4 1.1E+02 0.0023 27.0 4.3 54 156-212 138-191 (230)
178 PRK10418 nikD nickel transport 25.3 94 0.002 28.1 3.9 55 155-212 146-200 (254)
179 TIGR03005 ectoine_ehuA ectoine 25.3 1.1E+02 0.0024 27.5 4.4 56 155-213 152-207 (252)
180 PRK13649 cbiO cobalt transport 25.2 1.1E+02 0.0025 27.9 4.6 54 155-212 151-204 (280)
181 PRK13639 cbiO cobalt transport 25.2 1.5E+02 0.0032 27.3 5.3 54 155-212 143-196 (275)
182 PRK14272 phosphate ABC transpo 25.0 1.5E+02 0.0032 26.6 5.1 42 155-199 154-195 (252)
183 PRK14260 phosphate ABC transpo 25.0 1.6E+02 0.0035 26.6 5.4 54 155-213 156-209 (259)
184 PRK14247 phosphate ABC transpo 24.8 1.5E+02 0.0032 26.6 5.1 42 155-199 152-193 (250)
185 PRK14263 phosphate ABC transpo 24.7 1.5E+02 0.0032 27.1 5.2 42 155-199 155-196 (261)
186 PRK10070 glycine betaine trans 24.7 97 0.0021 30.8 4.2 57 155-214 170-226 (400)
187 PRK14235 phosphate transporter 24.6 1.7E+02 0.0037 26.7 5.5 53 155-212 169-221 (267)
188 PRK11231 fecE iron-dicitrate t 24.5 1.3E+02 0.0029 27.1 4.7 54 155-212 144-197 (255)
189 TIGR02324 CP_lyasePhnL phospho 24.4 1.8E+02 0.0039 25.5 5.5 41 155-198 155-195 (224)
190 PRK14244 phosphate ABC transpo 24.4 1.7E+02 0.0037 26.2 5.4 53 155-212 155-207 (251)
191 PRK14268 phosphate ABC transpo 24.3 1.6E+02 0.0035 26.6 5.3 53 155-212 160-212 (258)
192 TIGR01186 proV glycine betaine 24.3 1.1E+02 0.0023 30.1 4.3 58 155-215 135-192 (363)
193 PRK14270 phosphate ABC transpo 24.2 1.6E+02 0.0035 26.4 5.2 53 155-212 153-205 (251)
194 TIGR03269 met_CoM_red_A2 methy 24.0 96 0.0021 31.2 4.1 55 156-213 434-488 (520)
195 PRK14262 phosphate ABC transpo 24.0 1.4E+02 0.003 26.7 4.7 53 155-212 152-204 (250)
196 PRK13633 cobalt transporter AT 24.0 1.2E+02 0.0025 28.1 4.4 57 155-214 150-206 (280)
197 cd03278 ABC_SMC_barmotin Barmo 24.0 2.3E+02 0.0051 24.8 6.1 55 156-212 120-175 (197)
198 TIGR03771 anch_rpt_ABC anchore 24.0 1.2E+02 0.0027 26.8 4.4 40 156-198 120-159 (223)
199 PRK14275 phosphate ABC transpo 23.9 1.6E+02 0.0035 27.3 5.3 52 156-212 189-240 (286)
200 PRK15112 antimicrobial peptide 23.9 1.1E+02 0.0023 28.0 4.1 41 155-198 155-195 (267)
201 TIGR01686 FkbH FkbH-like domai 23.8 1.6E+02 0.0035 27.8 5.4 67 185-254 86-156 (320)
202 cd03222 ABC_RNaseL_inhibitor T 23.5 1.4E+02 0.003 26.1 4.5 41 155-198 77-117 (177)
203 PRK14267 phosphate ABC transpo 23.5 2E+02 0.0043 25.8 5.6 53 155-212 155-207 (253)
204 PRK14256 phosphate ABC transpo 23.5 1.6E+02 0.0034 26.5 5.0 53 155-212 154-206 (252)
205 cd03262 ABC_HisP_GlnQ_permease 23.5 1.5E+02 0.0033 25.6 4.8 41 155-198 141-181 (213)
206 PRK11144 modC molybdate transp 23.4 1.1E+02 0.0024 29.5 4.2 55 155-212 134-188 (352)
207 PRK11124 artP arginine transpo 23.3 1.5E+02 0.0034 26.3 4.9 41 155-198 147-187 (242)
208 cd03248 ABCC_TAP TAP, the Tran 23.2 1.8E+02 0.0039 25.5 5.2 53 155-212 156-208 (226)
209 PRK14254 phosphate ABC transpo 23.1 1.5E+02 0.0033 27.5 5.0 53 155-212 186-238 (285)
210 PF13324 GCIP: Grap2 and cycli 23.0 39 0.00084 31.6 1.0 40 217-261 106-147 (275)
211 PRK03695 vitamin B12-transport 23.0 1.4E+02 0.0031 26.9 4.7 57 155-212 132-192 (248)
212 PRK11650 ugpC glycerol-3-phosp 23.0 1.1E+02 0.0024 29.8 4.1 58 155-215 140-197 (356)
213 cd03217 ABC_FeS_Assembly ABC-t 22.9 1.3E+02 0.0028 26.2 4.2 40 156-198 111-150 (200)
214 PRK10419 nikE nickel transport 22.9 1.1E+02 0.0025 27.9 4.0 41 155-198 157-197 (268)
215 TIGR01188 drrA daunorubicin re 22.9 1.4E+02 0.0031 27.8 4.8 54 155-212 130-183 (302)
216 PRK14251 phosphate ABC transpo 22.8 1.8E+02 0.0038 26.0 5.2 53 155-212 153-205 (251)
217 CHL00131 ycf16 sulfate ABC tra 22.8 1.5E+02 0.0033 26.5 4.7 41 155-198 157-197 (252)
218 PRK14253 phosphate ABC transpo 22.7 1.7E+02 0.0036 26.2 5.0 53 155-212 151-203 (249)
219 TIGR03265 PhnT2 putative 2-ami 22.6 1E+02 0.0023 29.8 3.9 57 155-214 140-196 (353)
220 TIGR00972 3a0107s01c2 phosphat 22.6 1.5E+02 0.0032 26.5 4.7 53 155-212 150-202 (247)
221 PF02463 SMC_N: RecF/RecN/SMC 22.3 1.8E+02 0.0038 25.4 5.0 68 155-227 144-211 (220)
222 PRK11701 phnK phosphonate C-P 22.1 1.2E+02 0.0027 27.3 4.1 41 155-198 157-197 (258)
223 PF05756 S-antigen: S-antigen 22.0 19 0.00042 28.4 -1.1 20 267-286 62-81 (94)
224 PRK14266 phosphate ABC transpo 21.9 2.3E+02 0.0049 25.3 5.7 53 155-212 152-204 (250)
225 COG1131 CcmA ABC-type multidru 21.8 1.1E+02 0.0023 28.9 3.7 50 145-200 135-184 (293)
226 PLN02575 haloacid dehalogenase 21.8 5.4E+02 0.012 25.6 8.7 76 184-263 271-349 (381)
227 PRK13540 cytochrome c biogenes 21.7 1.9E+02 0.004 25.1 5.0 41 155-198 133-173 (200)
228 PF03830 PTSIIB_sorb: PTS syst 21.4 2.2E+02 0.0047 24.5 5.2 98 162-261 18-134 (151)
229 PRK10762 D-ribose transporter 21.2 1.4E+02 0.003 30.0 4.6 53 156-212 402-454 (501)
230 PRK14274 phosphate ABC transpo 21.1 2.5E+02 0.0055 25.3 5.9 53 155-212 161-213 (259)
231 cd00267 ABC_ATPase ABC (ATP-bi 21.1 2.2E+02 0.0048 23.4 5.1 41 155-198 86-126 (157)
232 cd03238 ABC_UvrA The excision 21.0 1.4E+02 0.003 26.1 4.0 57 155-213 93-149 (176)
233 TIGR03411 urea_trans_UrtD urea 21.0 1.6E+02 0.0036 26.0 4.6 53 155-212 149-201 (242)
234 PLN03073 ABC transporter F fam 20.9 1.8E+02 0.0038 31.3 5.5 50 156-212 351-400 (718)
235 PF13086 AAA_11: AAA domain; P 20.9 1.1E+02 0.0024 25.9 3.3 54 150-211 1-61 (236)
236 PRK14252 phosphate ABC transpo 20.9 2.1E+02 0.0045 26.0 5.3 53 155-212 167-219 (265)
237 PRK13547 hmuV hemin importer A 20.8 1.3E+02 0.0028 27.8 4.0 58 155-212 151-214 (272)
238 PRK14246 phosphate ABC transpo 20.8 1.8E+02 0.0039 26.5 4.9 53 155-212 159-211 (257)
239 cd03244 ABCC_MRP_domain2 Domai 20.8 2.6E+02 0.0056 24.3 5.7 42 155-199 145-186 (221)
240 PRK09536 btuD corrinoid ABC tr 20.8 1.8E+02 0.004 28.9 5.2 53 156-212 146-198 (402)
241 TIGR02633 xylG D-xylose ABC tr 20.7 1.6E+02 0.0035 29.4 5.0 54 155-212 147-200 (500)
242 TIGR00678 holB DNA polymerase 20.7 2E+02 0.0044 24.5 5.0 84 171-262 97-183 (188)
243 TIGR02982 heterocyst_DevA ABC 20.6 1.5E+02 0.0033 26.0 4.2 54 156-212 148-201 (220)
244 PRK10744 pstB phosphate transp 20.5 1.8E+02 0.0038 26.4 4.7 53 155-212 162-214 (260)
245 PRK15064 ABC transporter ATP-b 20.4 2E+02 0.0042 29.1 5.5 50 156-212 445-494 (530)
246 PRK13541 cytochrome c biogenes 20.4 2.5E+02 0.0055 24.1 5.5 41 155-198 129-169 (195)
247 PRK10895 lipopolysaccharide AB 20.3 2.4E+02 0.0051 25.1 5.5 41 155-198 143-183 (241)
248 PRK14269 phosphate ABC transpo 20.3 2E+02 0.0043 25.8 5.0 53 155-212 148-200 (246)
249 PRK11425 PTS system N-acetylga 20.2 3.1E+02 0.0068 23.7 6.0 70 188-261 63-135 (157)
No 1
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=100.00 E-value=1.7e-73 Score=514.30 Aligned_cols=206 Identities=42% Similarity=0.718 Sum_probs=195.9
Q ss_pred CceeeccCCCe-EeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCC
Q 023024 53 PLPILSFTGEK-IGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTP 131 (288)
Q Consensus 53 ~v~V~~~~G~~-~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP 131 (288)
+++|+|++|+. +|+++|++.+| .+++.++||++|+||++++|||||+||||+||+||||||||||||||||+||+|||
T Consensus 8 ~~~v~~~~g~~~~~~~~l~~~vf-~~~~~~ll~~~v~~~~a~~R~gt~~tKtR~eV~G~grKp~~QKGTGrAR~Gs~rsP 86 (215)
T CHL00147 8 NYPVIDLTGKEKSETIKLKLNVL-EKSGNYLLHRALVRQNNNQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSNRSP 86 (215)
T ss_pred eEEEEccCCCeecceEEeCHHHh-CCchHhHHHHHHHHHHHHHhhcccccCccccccCCCCCCcccCCCCccCCCCCcCC
Confidence 79999999999 89999999999 55779999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEe
Q 023024 132 LRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM 211 (288)
Q Consensus 132 ~~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~ 211 (288)
+|||||+||||+||||+++||||+|++||++|||++. ++++|||++...++.||||+++++|+++|++.++++|||++
T Consensus 87 ~~rgGG~afgP~pR~y~~klnKKvrrlAl~sALS~k~--~~l~VVd~~~~~~~~~KTK~~~~~L~~l~~~~~~~~L~V~~ 164 (215)
T CHL00147 87 LWKGGGVIFGPKPKTYSNKLNKKERRLALRTLLYNKS--NNITVVENFESSITNPKTKAFINLLKKLNINLDQKILIIVP 164 (215)
T ss_pred cccCCEeecCCCCcchhhhcCHHHHHHHHHHHHHHhh--CCeEEEcccccccCCCCHHHHHHHHHHcCCCcCCceEEEEC
Confidence 9999999999999999999999999999999999995 68999999864478899999999999999853457999998
Q ss_pred ccchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023024 212 EVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 212 ~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~ 261 (288)
+.++|+++|+||||+|+++++++|||||||++++||||++|+++|+++|+
T Consensus 165 ~~~~nl~~S~rNlp~V~v~~~~~lNv~dLL~~~~vvit~~Al~~lee~~~ 214 (215)
T CHL00147 165 EKTENLYLSTRNLKNVELISADTLNIKSLLKAKQIIITKEALKIIEEVYN 214 (215)
T ss_pred CCchHHHHHHhCCCCcEEEecCCccHHHHhcCCcEEEEHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999985
No 2
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=3.6e-71 Score=496.00 Aligned_cols=204 Identities=42% Similarity=0.694 Sum_probs=198.1
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCC
Q 023024 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPL 132 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~ 132 (288)
+++|||++|+.+|+++||+.+|..++|+||||++|+||++++|||||+||+|+||+|+|||||+||||||||+|+++||+
T Consensus 2 ~~~v~~~~g~~~~~i~l~~~vF~~~~r~dll~~~v~~~~~~~Rqgta~tk~r~ev~GsgrK~~~QKGTGrAR~Gs~rsP~ 81 (205)
T PRK05319 2 ELKVLNLDGKEAGEVELSDAVFGVEPNEALLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSPQ 81 (205)
T ss_pred eeEEEcCCCCCcceEEcCHHHhCCCccHHHHHHHHHHHHHhcccCcccCCcccccCCCCCCCCCCCCCCccCcCcccCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 133 RPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 133 ~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
|||||+||||+||+|++|||||+|++|+++||++++++++++|||++. ++.+|||+++++|+++|+ +++|||+++
T Consensus 82 ~rGGg~afgpkpr~~~~klnkK~~~lAl~~aLs~k~~~~~l~Vvd~~~--~~~~KTk~~~~~l~~lg~---~~~Lii~~~ 156 (205)
T PRK05319 82 WRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRLVVVDDLS--LEAPKTKELAAKLKNLGL---KKVLIVTDE 156 (205)
T ss_pred ccCCeeeCCCCccchhhhcCHHHHHHHHHHHHHHHHhcCCeEEEeccc--cCCCCHHHHHHHHHHcCC---CceEEEECC
Confidence 999999999999999999999999999999999999999999999985 688999999999999998 368999988
Q ss_pred cchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023024 213 VSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 213 ~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~ 261 (288)
.++|+.+|+||||+|+++++++||+||||++++||||++|++.|+++|.
T Consensus 157 ~~~n~~~a~rNi~~v~v~~~~~ln~~dll~~~~vv~t~~Al~~l~~~~~ 205 (205)
T PRK05319 157 VDENLYLSARNLPNVDVLPAQGLNVYDLLRADKVVLTKAAVKKLEERLA 205 (205)
T ss_pred CchHHHHHHhCCCCcEEEecCCccHHHhcCCCcEEEEHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999873
No 3
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=2.2e-69 Score=506.63 Aligned_cols=209 Identities=33% Similarity=0.560 Sum_probs=194.9
Q ss_pred cCCCceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCC
Q 023024 50 LASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNR 129 (288)
Q Consensus 50 ~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~r 129 (288)
|| +++|||++|+++|+|+||+.+|..++|.||||++|+||++++|||||+||||+||+|||||||+||||||||+||+|
T Consensus 1 M~-~~~v~~~~g~~~g~ieL~~~vF~~~~r~dllh~vv~~q~a~~Rqgt~~tKtRaEV~G~GkKP~rQKGTGrAR~Gs~r 79 (298)
T PRK14547 1 MA-TCDVLDWQGKKVGSAELPLKVFDVETNIPLIHQVVVAQMAAARQGTHHTKTRAEVRGGGKKPWRQKGTGRARQGSIR 79 (298)
T ss_pred Cc-eeEEeccCCCCcceEECCHHHhCCCccHHHHHHHHHHHHHhhhcCCCCCCceeeccCCCCCccCCCCCcccCcCCcc
Confidence 55 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEE
Q 023024 130 TPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFL 209 (288)
Q Consensus 130 sP~~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV 209 (288)
||+|||||++|||+||+|++|||||+|++||++|||+++++++|+|||+|.. ++.||||+++++|++++.. ..+|||
T Consensus 80 sP~wrGGGvafGPkpR~y~~klNKK~rrlAlrsALS~k~~~~~liVVd~~~~-~~~~KTK~~~~~L~~l~~~--~~lLiv 156 (298)
T PRK14547 80 APQWRGGGTVHGPRPREYNQRTPKKMRQAALRGALSDRARDNRLIVVESLQD-GDPPSTKAVAQALSVMEDQ--RALLVV 156 (298)
T ss_pred CCceeCCeeecCCCCchhhhhcCHHHHHHHHHHHHHHHHhcCCEEEEeCccc-cCCcCHHHHHHHHHhcccC--ceEEEE
Confidence 9999999999999999999999999999999999999999999999999842 5789999999999998732 234555
Q ss_pred EeccchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHH---HHhhCC
Q 023024 210 VMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFL---NGRYGV 262 (288)
Q Consensus 210 ~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L---~e~~~~ 262 (288)
+.+.+.++.+|+||||+|+++++++|||||||++++||||++||+.| +++|+.
T Consensus 157 ~~~~~~~~~ls~RNL~~V~v~~~~~lNv~dLl~~~~vViT~~Al~~L~~~~~~~~~ 212 (298)
T PRK14547 157 AERSDAVERLSVRNLARVHVLGADQLNTYDVLNVDWVVFTQSALEAFVGAKSRWGS 212 (298)
T ss_pred ecCccHHHHHHHhCCCCcEEEecCCccHHHHhCCCCEEEEHHHHHHHHhhcccccc
Confidence 55556688889999999999999999999999999999999999999 777773
No 4
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.8e-68 Score=497.90 Aligned_cols=191 Identities=32% Similarity=0.569 Sum_probs=181.0
Q ss_pred EEEcCCCCCCCC-chHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCCC
Q 023024 66 ETYLDLKSAAPD-TARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKP 144 (288)
Q Consensus 66 ~ieL~~~vF~~~-~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkP 144 (288)
.++|++.+|+.+ ++.++||++|+||++++|||||+||||+||+|||||||||||||||||||+|||+|||||++|||+|
T Consensus 103 ~ieL~~~vF~~e~~~~~llh~~V~~q~A~~RqGT~~TKtRsEVsGggkKPwrQKGTGRAR~GS~RSP~wrGGGvaFGPkP 182 (295)
T PRK14907 103 TSKLPKKLFASEKIYSQAIFDTILSERASRRQGTHKVKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAFGPTP 182 (295)
T ss_pred eEEeCHHHhCCCccchhHHHHHHHHHHHHhccccccccchhhccCCCCCCcccCCCCccCCCCCcCCcccCCeeecCCCC
Confidence 489999999998 7999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhc
Q 023024 145 -RDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRN 223 (288)
Q Consensus 145 -Rd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RN 223 (288)
|||+++||+|+|++||++|||+++++ +++|||+|. ++.||||+++++|++||++...++|||+ .|+|+++|+||
T Consensus 183 ~RdY~~KLNKKvRrLALrsALS~ka~~-~LvVVd~~~--le~~KTK~l~~~L~~lgl~~~k~vLiV~--~denl~lSaRN 257 (295)
T PRK14907 183 ERNYKLKVNKKVRFNAFVSALTLLANS-KAVLVDDFK--LEKISTKDLIKKLTKLKINNLKHILIVS--NDENIFKSARN 257 (295)
T ss_pred ccchhhhcCHHHHHHHHHHHHHHhccC-CEEEEeccc--CCCCCHHHHHHHHHHcCcccCCceEEEE--CCchHHHHHhC
Confidence 99999999999999999999999965 799999985 7899999999999999985224689988 37899999999
Q ss_pred CCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023024 224 IGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 224 Ip~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~ 261 (288)
||+|+++++++|||||||+++.||||++||+.|+++|.
T Consensus 258 Lp~V~Vl~~~~LNVydLL~~~~vViT~~Al~~Leer~~ 295 (295)
T PRK14907 258 LQNVIVVKPTSLSVELLIAADVLVLSKESIENLEGRIK 295 (295)
T ss_pred CCCceEeecCCccHHHHhcCCcEEEeHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999974
No 5
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=100.00 E-value=4.3e-68 Score=471.77 Aligned_cols=191 Identities=45% Similarity=0.715 Sum_probs=179.5
Q ss_pred EEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCCC-C
Q 023024 67 TYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKP-R 145 (288)
Q Consensus 67 ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkP-R 145 (288)
|+||+.+|+.++|.|+||++|+||++++|||||+||||+||+|||||||+||||||||+|+++||+|||||+||||+| |
T Consensus 1 i~L~~~vF~~~~r~~llh~~v~~~~~~~Rqgt~~tktr~ev~g~grKp~~QKGTGrAR~Gs~rsP~~rgGg~afgPkp~r 80 (192)
T PF00573_consen 1 IELSPDVFNVPVRPDLLHRAVVWQLANRRQGTASTKTRSEVSGSGRKPWPQKGTGRARQGSIRSPQWRGGGVAFGPKPPR 80 (192)
T ss_dssp -ES-CGGGGSSTSHHHHHHHHHHHHHHTSSBT-SSSTSTTSSSSSSSSSSSSSSSSSSSSSCTSTTSTTSSBSSSSSSTS
T ss_pred CCCCHHHhCCCCcHHHHHHHHHHHHHhccCCccCCccceEEecccCcccCCCCCcccccCccccceeeccEEecCCcccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCC
Q 023024 146 DWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIG 225 (288)
Q Consensus 146 d~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp 225 (288)
||+++||||+|++|+++||++++.+++++|||+|. .++.+|||+++++|+++|+. +.++|||+++.++++++|+||||
T Consensus 81 ~~~~klnkK~r~lAl~~aLs~k~~~~~l~vvd~~~-~~~~~kTk~~~~~L~~~~~~-~~~~L~V~~~~~~~~~~a~rNl~ 158 (192)
T PF00573_consen 81 DYSYKLNKKVRRLALRSALSAKAAEGNLIVVDNFS-PLEEPKTKDLVKLLKKLGLK-GKSVLFVVGEENENLFRASRNLP 158 (192)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHTTHHHHCTSCS-SSSSSSHHHHHHHHHHTTTS-SSSEEEEESSTSHCHHHHHCTST
T ss_pred cceecCChHHHHHHHHHHHHHhhcccceEEeeccc-cccccCHHHHHHHHHHhhhc-ccceEEEecCCchHHHHHHHccC
Confidence 99999999999999999999999999999999985 47899999999999999994 35799999988999999999999
Q ss_pred CceeecCCCcchhhhcCCCcEEEcHHHHHHHHHh
Q 023024 226 TLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259 (288)
Q Consensus 226 ~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~ 259 (288)
+|+++++++|||||||++++||||++||++|+||
T Consensus 159 ~v~~~~~~~lnv~dll~~~~lv~t~~Al~~L~eR 192 (192)
T PF00573_consen 159 GVDVLPVEGLNVYDLLKADKLVITKSALEKLEER 192 (192)
T ss_dssp TEEEEESTG--HHHHCHSSEEEEEHHHHHHHHH-
T ss_pred CeEEEecCcEeHHHHhCCCcEEEEHHHHHHHhcC
Confidence 9999999999999999999999999999999986
No 6
>KOG1624 consensus Mitochondrial/chloroplast ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-63 Score=454.22 Aligned_cols=267 Identities=38% Similarity=0.552 Sum_probs=233.9
Q ss_pred cccccccccccccccccCCCCCCCCccCCCCCCCCCCCCCcceeec-ccCCCceeeccCCCeEeEEEcCCCCCCCCchHH
Q 023024 3 ASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSS-QLASPLPILSFTGEKIGETYLDLKSAAPDTARA 81 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~d 81 (288)
..+.++++|||..+++++.++.....+.+-....-..+..|+.+.- |.. -+++..+++|++|.++|++++|..++|+|
T Consensus 5 ~~p~s~~~~ss~~~l~ss~~~~~~~~~s~l~~~~~~~p~~p~~~~p~qa~-v~~~~~~e~E~~gl~~l~~dvf~~~~RrD 83 (290)
T KOG1624|consen 5 LYPNSSSFFSSKRNLVSSTQSPPEQITSALHKESTLKPELPVSIPPKQAW-VEPLDFFELEKVGLVDLHPDVFAEPPRRD 83 (290)
T ss_pred hcchhhHHHHHHHHHHhhccCCccccccccccccccCcCCCCCcChhhhe-eeeccccccccceeeecChhhhccchHHH
Confidence 3577899999999999888877776555422233335667777764 444 56777789999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCC-CCccccccCHHHHHHHH
Q 023024 82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKEKRLAI 160 (288)
Q Consensus 82 llh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPk-PRd~~~klNkK~rrlAl 160 (288)
|||++|+||+.|+|+|||+||||+||+|||||||+||||||||+|+.|||+++|||++|||+ ||||++|||+|+|.|||
T Consensus 84 Ilhrav~wq~~nrrvgtastktRaEv~ggGrKp~~QKgtGrAr~Gs~rsP~r~gGg~~~gpr~P~d~~~~Lp~kvr~lgl 163 (290)
T KOG1624|consen 84 ILHRAVVWQLDNRRVGTASTKTRAEVRGGGRKPWPQKGTGRARVGSLRSPQRRGGGVAHGPRGPRDYSYKLPSKVRSLGL 163 (290)
T ss_pred HHHHHHHHhhcccccccccCCccccccCCCCCcCcccCCCcccccCccCcccCCCccccCCCCCcchhhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHH--HcCCCCCCceEEEEe---ccchhHHHhhhcCCCceeecCCCc
Q 023024 161 STAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMR--RWGLDPKQKATFLVM---EVSENVEKSSRNIGTLKMLTPRTL 235 (288)
Q Consensus 161 ~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk--~lg~~~~~k~LiV~~---~~~~nl~~s~RNIp~V~v~~~~~L 235 (288)
++|||++..++.++|||++. +..+|+|...+++. +||. .+|||.. +.++|+.+|+|||+.++++++.+|
T Consensus 164 ~~ALS~~~a~~~l~I~d~~~--L~t~~pk~~~~l~~~~~~g~----~vl~v~~~~~~~~e~l~~as~~L~~~n~ip~~gl 237 (290)
T KOG1624|consen 164 KIALSAKLAQDDLHIVDELG--LPTGKPKYLLNLLAQRNWGT----SVLFVDEDHFEFDENLALASRRLGYLNLIPVGGL 237 (290)
T ss_pred HHHHHHHHhCCceEEecccC--CCCCCcHHHHHHHHHHhcCC----eeEEeccchhhchHHHHHHhhccCeeEeeccccc
Confidence 99999999999999999986 56677777777665 5655 3788863 468999999999999999999999
Q ss_pred chhhhcCCCcEEEcHHHHHHHHHhhCCCCCCCCCchhhhHH
Q 023024 236 NLFDILDAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESE 276 (288)
Q Consensus 236 nv~dLL~~~~lViT~~Al~~L~e~~~~~~~~~~~~~~~~~~ 276 (288)
||||+|+++++|+|.+|++.|++++......++|++|...+
T Consensus 238 nv~s~lk~dtlvlt~~aVe~l~er~~~~~~r~~~~~~~~~~ 278 (290)
T KOG1624|consen 238 NVFSILKHDTLVLTREAVEFLEERLLQQVNRELDADEYASM 278 (290)
T ss_pred chhhhhhcCceEecHHHHHHHHHHHHHHHhhcccccchhhh
Confidence 99999999999999999999999999888887776666554
No 7
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-63 Score=446.39 Aligned_cols=209 Identities=42% Similarity=0.666 Sum_probs=197.8
Q ss_pred cCCCceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCC
Q 023024 50 LASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNR 129 (288)
Q Consensus 50 ~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~r 129 (288)
|| +++|||.+|+.+|++++++.+|..+.+.|+||++|+||++++|||||+||+|+||+|+|||||+||||||||+|+++
T Consensus 1 m~-k~~v~~~~G~~~g~~~~~~~vf~~~~~~dli~~av~a~~a~~RQgt~~~k~rgevs~~g~Kp~~QkgtgraR~gs~r 79 (214)
T COG0088 1 MM-KLKVYDLDGEEVGEVELLPEVFGPERNEDLIHRAVLAQLANRRQGTHSTKTRGEVSGGGKKPWGQKGTGRARQGSIR 79 (214)
T ss_pred CC-cceEeCCCCCCccccccChhhccCCchHHHHHHHHHHHHHhhhccCCCCCCcccccccCcCCCCCCcCCcCCCCCCC
Confidence 55 89999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCC-CccHHHHHHHHHHcCCCCCCceE
Q 023024 130 TPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFE-RPKTKEFIEAMRRWGLDPKQKAT 207 (288)
Q Consensus 130 sP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e-~~KTK~~~~~Lk~lg~~~~~k~L 207 (288)
+|+|||||++|||+| |||++|||||||++||++|||++++++++++++++. ++ .||||+++++|++++.+ .+++|
T Consensus 80 sP~~rGGg~a~gPkp~r~~~~klnkK~rrlAl~sAls~ka~~~~lv~~~~~~--~~~~~kTK~~~~~lk~l~~~-~~~~l 156 (214)
T COG0088 80 SPQWRGGGVAHGPKPERDYSQKLNKKERRLALRSALSAKARAGKLVVVRGHV--FEDAPKTKELVEFLKKLGLD-VKRLL 156 (214)
T ss_pred CCeeecCccccCCCCccchhhhcCHHHHHHHHHHHHHHhccCCCEEEEeccc--ccCCccHHHHHHHHHHhhhh-hceeE
Confidence 999999999999999 999999999999999999999999999999999985 77 89999999999998775 23466
Q ss_pred EEEeccchhHHHhhhcCCCceeecCCC-cchhhhcCCCcEEEcHHHHHHHHHhhCC
Q 023024 208 FLVMEVSENVEKSSRNIGTLKMLTPRT-LNLFDILDAETLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 208 iV~~~~~~nl~~s~RNIp~V~v~~~~~-Lnv~dLL~~~~lViT~~Al~~L~e~~~~ 262 (288)
++....+.|+.+++|||+++.++.+.+ +|+|||+.++.|++++.|+..++++|..
T Consensus 157 ~~~~~~~~n~~ls~Rnl~~~~~~~~~~~~~~~Dv~~~~~l~i~~~A~~~~~~~l~~ 212 (214)
T COG0088 157 IVKGERDGNGKLSARNLKNVKVVLVVGGLPVVDVLRADKLVITKLAPGKIEERLTV 212 (214)
T ss_pred EeecccccceeecccCCCCceeeeeeccccceEEEeecceeeeHhhhhhhhhhhhc
Confidence 776677889999999999999999888 9999999999999999999999999974
No 8
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=100.00 E-value=1.1e-62 Score=452.41 Aligned_cols=199 Identities=30% Similarity=0.407 Sum_probs=188.0
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCc-----ccccccceecCCCC---CCcccCCCCccc
Q 023024 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGT-----ASTLTRGEVRGGGR---KPYSQKKTGRAR 124 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGT-----a~TKtR~EV~GsgR---KP~~QKGTGRAR 124 (288)
+++|||++|+.+|+++||+ +|..++++++||++|+||++|+|||| |+||||+||+|+|| |||+||||||||
T Consensus 2 ~v~v~~~~g~~~g~i~L~~-vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~ta~tKtraev~G~Gr~~~Kp~rQKGTGrAr 80 (254)
T PRK04042 2 KAKVYDLDGEVVGEIELPA-VFEEPVRPDLIRRAVLAAQTARLQPKGRDPLAGKRTSAESWGSGRGIARVPRLKGGSRAA 80 (254)
T ss_pred eeEEEcCCCCCcceEehhH-hhCCCCcHHHHHHHHHHHHHhccCCCCCCccccCccceeEcCCCCCcCcCCccCCCCCcc
Confidence 6899999999999999996 99999999999999999999999994 99999999999999 999999999998
Q ss_pred cCCCCCCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHHhC---------------CcEEEeccCCCCCCccH
Q 023024 125 RGSNRTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAAE---------------NTIVVEEFDGKFERPKT 188 (288)
Q Consensus 125 ~Gs~rsP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~~~---------------~liVVd~~~~~~e~~KT 188 (288)
|||+|||||++|||+| |+|++|||||+|++|+++|||+++.++ .++|||+|. +.|||
T Consensus 81 ----rsP~~rGGgv~fgPkp~R~y~~klnkK~rrlAlrsALs~k~~~~lv~~~~~~~~~~~e~~lvvvd~~~---~~~KT 153 (254)
T PRK04042 81 ----FVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATANPELVKARGHVFEGVPELPLVVVDDFE---SLKKT 153 (254)
T ss_pred ----ccCccCcCCeeCCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhhhcCccccCCCccCEEEEcccc---cccCH
Confidence 8999999999999999 999999999999999999999999885 789999984 67999
Q ss_pred HHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcCC
Q 023024 189 KEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDA 243 (288)
Q Consensus 189 K~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~ 243 (288)
|+++++|+++|++.+ .++|||+++ |+|+++|+||||+|+++++++||+||||++
T Consensus 154 K~~~~~Lk~lg~~~~~~~~~~~~~~~~~kgk~r~~~~~~~~~~LiV~~~-d~~~~~s~RNi~~v~v~~~~~lnv~dLl~~ 232 (254)
T PRK04042 154 KEVRELLEKLGLYDDVERAKEGKKIRAGKGKMRGRRYKKPKSVLIVVSD-DSPIVKAARNLPGVDVVTVDNLNVEHLAPG 232 (254)
T ss_pred HHHHHHHHHcCCcccchhhhccceecccccccccccccCCCccEEEEcC-CcceeehhcCCCCCEEEecCCccHHHhhCc
Confidence 999999999998532 358999977 899999999999999999999999999998
Q ss_pred ----CcEEEcHHHHHHHHHhh
Q 023024 244 ----ETLVLTPSTVDFLNGRY 260 (288)
Q Consensus 244 ----~~lViT~~Al~~L~e~~ 260 (288)
+.||||++|++.|+++|
T Consensus 233 ~~~~~~vv~t~~Al~~l~e~~ 253 (254)
T PRK04042 233 GHPGRLTVWTESAIEELRERF 253 (254)
T ss_pred CCCCCeEEEEHHHHHHHHHHh
Confidence 89999999999999987
No 9
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=100.00 E-value=2e-61 Score=443.21 Aligned_cols=198 Identities=30% Similarity=0.415 Sum_probs=186.0
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCc-----ccccccceecCCCC---CCcccCCCCccc
Q 023024 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGT-----ASTLTRGEVRGGGR---KPYSQKKTGRAR 124 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGT-----a~TKtR~EV~GsgR---KP~~QKGTGRAR 124 (288)
+++|||++|+.+|+++||+ +|..+++.++||++|+||++|+|||| |+||||+||+|+|| |||+|||||||
T Consensus 2 ~~~v~~~~g~~~~~i~l~~-vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~~a~tKtraev~G~Grg~aKp~rQKGTGrA- 79 (251)
T TIGR03672 2 KAKVYDLDGEVVGEIELPA-VFEEPVRPDLIKRAVLAAQTNRLQPYGADPYAGKRTSAESWGSGRGIARVPRIKGGSRA- 79 (251)
T ss_pred ceEEEccCCCCcceEehHH-hhCCCccHHHHHHHHHHHHHhccCCCCCCcccCcccceeEccCCCCcCCCCccCCCCcc-
Confidence 6899999999999999995 99999999999999999999999999 56999999999999 99999999999
Q ss_pred cCCCCCCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHHhC--------------CcEEEeccCCCCCCccHH
Q 023024 125 RGSNRTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAAE--------------NTIVVEEFDGKFERPKTK 189 (288)
Q Consensus 125 ~Gs~rsP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~~~--------------~liVVd~~~~~~e~~KTK 189 (288)
+|||+|||||++|||+| |+|++|||||+|++|+++|||+++.++ .++|||+|. +.||||
T Consensus 80 ---~rsP~~rGGGv~fgPkp~R~y~~klNkK~rrlAl~sALs~k~~~~lv~~~~~~~~~~e~~lvVvd~~~---~~~KTK 153 (251)
T TIGR03672 80 ---ARVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATADPELVKARGHVFEGDELPIVVVDDFE---SLKKTK 153 (251)
T ss_pred ---eecCccCcCCeeCCCCCCcccceecCHHHHHHHHHHHHHHhcchhhhhhcccccccccccEEEEeCCC---CCCCHH
Confidence 78999999999999999 999999999999999999999999988 789999983 679999
Q ss_pred HHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcCC-
Q 023024 190 EFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDA- 243 (288)
Q Consensus 190 ~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~- 243 (288)
+++++|++||++.+ .++|||+.+ ++|+++|+||||+|+++++.+||+||||++
T Consensus 154 ~~~~~Lk~l~~~~~~~~~~~~~~~~~~kgk~~~r~~~~~~~~LiV~~~-~~~l~~s~RNi~~V~v~~~~~lNv~dLl~~~ 232 (251)
T TIGR03672 154 EVRELLEALGVYDDIERAKEGKKIRAGKGKMRGRRYKEPKSVLIVVGD-DSGISKAARNLPGVDVVTVNNLNVEHLAPGG 232 (251)
T ss_pred HHHHHHHHcCCccccchhhccceeeccccccccccccCCCccEEEEcC-CcchhhhhcCCCCCEEEecCCccHHHhhCcC
Confidence 99999999998532 358999876 789999999999999999999999999998
Q ss_pred ---CcEEEcHHHHHHHHHh
Q 023024 244 ---ETLVLTPSTVDFLNGR 259 (288)
Q Consensus 244 ---~~lViT~~Al~~L~e~ 259 (288)
+.||||++|++.|+++
T Consensus 233 ~~~~~vv~t~~Al~~l~e~ 251 (251)
T TIGR03672 233 HPGRLTVWTESAIEKLEER 251 (251)
T ss_pred CCCCeEEEEHHHHHHHhcC
Confidence 8899999999999974
No 10
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=100.00 E-value=5.5e-54 Score=413.62 Aligned_cols=206 Identities=24% Similarity=0.304 Sum_probs=188.5
Q ss_pred CCceeeccCC----CeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccc-----cccceecCCCCCCc---ccC-
Q 023024 52 SPLPILSFTG----EKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAST-----LTRGEVRGGGRKPY---SQK- 118 (288)
Q Consensus 52 ~~v~V~~~~G----~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~T-----KtR~EV~GsgRKP~---~QK- 118 (288)
|.|+|||.+| +.+|+++|| .||..|+|+||||++++++++|+||+|+.+ +|++|+||+||+|| |||
T Consensus 7 p~v~V~~~~g~~~~~~~~~v~Lp-~VF~~piR~dlv~~v~~~~~~n~RQp~~~~~~AG~qtsAeswGtGR~vaRiPR~kg 85 (405)
T PLN00185 7 PLVSVQSLDGDMATDKSATVALP-DVMTAPIRPDIVNFVHTNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPG 85 (405)
T ss_pred CeeEEEcCCCCccccccceeehH-HHhCCCCCHHHHHHHHHHHHHhccCCCCCCcccCCcceeeecCCCCCceecccccC
Confidence 5799999999 778999999 999999999999999999999999999999 99999999999999 999
Q ss_pred -CCCccccCCCCCCCccCcccccCCCC--CccccccCHHHHHHHHHHHHHHHHH------hC--------CcEEEeccCC
Q 023024 119 -KTGRARRGSNRTPLRPGGGVVFGPKP--RDWSIKINKKEKRLAISTAIASAAA------AE--------NTIVVEEFDG 181 (288)
Q Consensus 119 -GTGRAR~Gs~rsP~~rGGGvafGPkP--Rd~~~klNkK~rrlAl~sALs~k~~------~~--------~liVVd~~~~ 181 (288)
||||||||+. |.|++||++|||+| |+|++|||+|+|++|++||||+++. .| .++||+|+.
T Consensus 86 gGT~RAgqGa~--~~~~rGGr~FgP~p~~R~~~~KvNkK~rRlAl~SALAa~a~~~lV~arGH~i~~v~e~pLVV~d~~- 162 (405)
T PLN00185 86 GGTHRAGQGAF--GNMCRGGRMFAPTKTWRRWHRKVNVNQKRYAVVSALAASAVPSLVMARGHKIENVPEVPLVVSDSA- 162 (405)
T ss_pred CCCCcCCccCc--CCcCCCCeeCCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCEEEEeCc-
Confidence 8999999998 99999999999999 9999999999999999999999994 33 346887763
Q ss_pred CCCCccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcc
Q 023024 182 KFERPKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLN 236 (288)
Q Consensus 182 ~~e~~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Ln 236 (288)
...+|||+++++|+++|++.+ ++.|||+++.++++.+|+||||+|+++++++||
T Consensus 163 -e~~~KTK~av~~Lk~lg~~~d~~k~~~s~~iRaGkGKmR~Rr~~~~kg~LIV~~~~~~~l~kA~RNIPgV~v~~v~~LN 241 (405)
T PLN00185 163 -ESIEKTSAAIKILKQIGAYADVEKAKDSKGIRAGKGKMRNRRYVSRKGPLVVYGTEGAKIVKAFRNIPGVELCSVDRLN 241 (405)
T ss_pred -cCCcCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEcCCchhhhhhhcCCCCCeEEecCCcc
Confidence 345999999999999998532 237999987778899999999999999999999
Q ss_pred hhhhcCC----CcEEEcHHHHHHHHHhhCC
Q 023024 237 LFDILDA----ETLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 237 v~dLL~~----~~lViT~~Al~~L~e~~~~ 262 (288)
+|||+++ +.||||++||+.|+++|+.
T Consensus 242 v~dLapggh~gr~vI~TesA~~~Lee~~g~ 271 (405)
T PLN00185 242 LLQLAPGGHLGRFVIWTKSAFEKLDSIYGT 271 (405)
T ss_pred HHHHhccCCCCCEEEEEhHHHHHHHHHhcc
Confidence 9999995 4799999999999999985
No 11
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=100.00 E-value=6e-51 Score=390.89 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=180.5
Q ss_pred CCceeeccCC-CeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCcccc-----
Q 023024 52 SPLPILSFTG-EKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARR----- 125 (288)
Q Consensus 52 ~~v~V~~~~G-~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~----- 125 (288)
|+++|||.+| +.+|+++|| .||..|+|+||||++|+++++|+|||||.++++++ ++++||| ||||||+
T Consensus 5 ~~v~V~~~~g~~~~~~v~Lp-~VF~~pir~dlV~~vv~~~~aN~RQgta~s~~ag~--~tsaksw---GTGRA~aripR~ 78 (381)
T PTZ00428 5 PVVSVYSASDKSVVGTVPLP-AVFTAPIRPDLVQFVHTNMAKNRRQAYAVKPLAGM--QHSAESW---GTGRAVARIPRV 78 (381)
T ss_pred CeeEEEcCCCCcccceEehH-HhhCCCCcHHHHHHHHHHHHHhccCCCCcCCCCCC--CCCceec---CCCCCccccccc
Confidence 4799999998 778999999 89999999999999999999999999999988888 7888888 8888888
Q ss_pred ---CCCCCCC-----ccCcccccCCCC--CccccccCHHHHHHHHHHHHHHHHH--------------hCCcEEEeccCC
Q 023024 126 ---GSNRTPL-----RPGGGVVFGPKP--RDWSIKINKKEKRLAISTAIASAAA--------------AENTIVVEEFDG 181 (288)
Q Consensus 126 ---Gs~rsP~-----~rGGGvafGPkP--Rd~~~klNkK~rrlAl~sALs~k~~--------------~~~liVVd~~~~ 181 (288)
|+.|||+ |++||++|||+| |+|++|||+|+|++|++||||+++. .+.++||+|+
T Consensus 79 kg~GT~Rs~qGa~~n~~rGG~~FgP~~~~R~~~~KvNkK~rR~Al~SALaa~a~~~lv~argh~i~~v~e~plVV~d~-- 156 (381)
T PTZ00428 79 SGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLVVSDS-- 156 (381)
T ss_pred cCCCCCcCcccccCCcCCCceEcCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCEEEEcC--
Confidence 8888888 899999999999 9999999999999999999999975 2344778875
Q ss_pred CCCC-ccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCc
Q 023024 182 KFER-PKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235 (288)
Q Consensus 182 ~~e~-~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~L 235 (288)
++. +|||+++++|+++|++.+ ...|||+.+ |+++.+|+||||+|+++++++|
T Consensus 157 -~e~~~KTK~av~~Lk~lg~~~d~~k~~~s~~~R~gkGk~R~rr~~~~~g~LIV~~~-d~~l~~A~RNIpgV~v~~v~~L 234 (381)
T PTZ00428 157 -VESYEKTKEAVAFLKALGAFDDVNRVNDSKKIRAGKGKMRNRRYVMRRGPLVVYAN-DNGVTKAFRNIPGVDLCNVTRL 234 (381)
T ss_pred -cCCCCCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEcC-CcchhhhhcCCCCcEEEecCCc
Confidence 455 899999999999998533 127888855 8899999999999999999999
Q ss_pred chhhhcC----CCcEEEcHHHHHHHHHhhCC
Q 023024 236 NLFDILD----AETLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 236 nv~dLL~----~~~lViT~~Al~~L~e~~~~ 262 (288)
|+|||++ ++.||||++||+.|+++|+.
T Consensus 235 Nv~dLapggh~gr~vI~TesA~~~L~~~~gt 265 (381)
T PTZ00428 235 NLLQLAPGGHVGRFIIWTKSAFKKLDKIFGT 265 (381)
T ss_pred cHHHHhccCCCCCEEEEEhHHHHHHHHHhcc
Confidence 9999999 56899999999999999985
No 12
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=99.97 E-value=1.8e-31 Score=247.99 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=174.2
Q ss_pred CCCceeeccCCCeEe-EEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccc-----cccceecCCCC----CCcccCCC
Q 023024 51 ASPLPILSFTGEKIG-ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAST-----LTRGEVRGGGR----KPYSQKKT 120 (288)
Q Consensus 51 ~~~v~V~~~~G~~~g-~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~T-----KtR~EV~GsgR----KP~~QKGT 120 (288)
.|.+.||+.+|+.+. ++.|| .+|..|+|+||++.+....+.|+||.++.+ +|.+|.||+|| .| +-+|.
T Consensus 4 rp~vtvy~~~g~~s~~~l~lp-~vf~aPiRpdlv~~v~~~~~~n~rQpyAVs~kAG~QtSAESWGTGRAvaRiP-RV~GG 81 (363)
T KOG1475|consen 4 RPLVTVYSLDGEASKKTLTLP-AVFSAPIRPDLVNFVHTQVRKNRRQPYAVSEKAGHQTSAESWGTGRAVARIP-RVGGG 81 (363)
T ss_pred cceeeEEeccccccccccccc-ceeccCCcHHHHHHHHHHHhhccccchhhhhhhccccchhhcccccceeccc-ccCCC
Confidence 357999999998765 68887 799999999999999999999999998755 58899999996 45 45777
Q ss_pred CccccCCCC-CCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHHhC--------------CcEEEeccCCCCC
Q 023024 121 GRARRGSNR-TPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAAE--------------NTIVVEEFDGKFE 184 (288)
Q Consensus 121 GRAR~Gs~r-sP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~~~--------------~liVVd~~~~~~e 184 (288)
|..|.|+.. ...+|||.+.++.+. |.|+.++|..+++.|+.+|+++.+... .++||+|- ++
T Consensus 82 GT~RsGQgAFgNmCR~GrMfaPtKt~RrW~rkVn~n~Kr~A~asaiaasavpaLv~arGHrIe~VpelPlVVsd~---ve 158 (363)
T KOG1475|consen 82 GTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKVNENEKRYAIASAIAASAVPALVMARGHRIEEVPELPLVVSDK---VE 158 (363)
T ss_pred CcccccchhhhhhcccccccCchhhHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHhcCccccccccCceEeehh---hH
Confidence 878888744 677776555444456 999999999999999999999987653 67888773 45
Q ss_pred C-ccHHHHHHHHHHcCCCCC------------------------Cc-eEEEEeccchhHHHhhhcCCCceeecCCCcchh
Q 023024 185 R-PKTKEFIEAMRRWGLDPK------------------------QK-ATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLF 238 (288)
Q Consensus 185 ~-~KTK~~~~~Lk~lg~~~~------------------------~k-~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~ 238 (288)
. -|||+++.+|++++.+.| ++ .|+|+. .|..+.+++||||||++++++.||++
T Consensus 159 ~~~KTkeAV~~Lk~~~a~~di~kv~~S~~~RaGKGKmRNRr~~QrrGPlVVy~-Ed~~ivkAFRNIpGV~~~nV~~LnlL 237 (363)
T KOG1475|consen 159 SFRKTKEAVALLKKLKAWNDIKKVYNSRRLRAGKGKMRNRRYIQRRGPLVVYN-EDNGIVKAFRNIPGVELMNVERLNLL 237 (363)
T ss_pred HHHhHHHHHHHHHHhccHHHHHHHHhhcccccCccchhhhhhhhhcCCEEEEe-cCcchhhhhcCCCcceeechhhhhhh
Confidence 5 899999999999988754 12 477774 46778899999999999999999999
Q ss_pred hhcC----CCcEEEcHHHHHHHHHhhCCC
Q 023024 239 DILD----AETLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 239 dLL~----~~~lViT~~Al~~L~e~~~~~ 263 (288)
.|++ ++.||||++||++|++.||..
T Consensus 238 kLAPGghlGRfvIWTeSAF~kLd~i~Gs~ 266 (363)
T KOG1475|consen 238 KLAPGGHLGRFVIWTESAFEKLDSIYGST 266 (363)
T ss_pred hcCCCcccceeEEeehHHhhhHHhhcccc
Confidence 9999 699999999999999999963
No 13
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=93.94 E-value=0.051 Score=53.67 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCCCchHHHHHHHHHHHHhhCC-CCcccccccceecCCCCCCc---ccC--CCCccccCC
Q 023024 74 AAPDTARAVVHRALITDMQNKR-RGTASTLTRGEVRGGGRKPY---SQK--KTGRARRGS 127 (288)
Q Consensus 74 F~~~~~~dllh~~v~~~~a~~R-qGTa~TKtR~EV~GsgRKP~---~QK--GTGRAR~Gs 127 (288)
+..++-..++.......++..- .-++.-++++|+||+||+++ +|| ||+||+||+
T Consensus 31 ir~dlV~~vv~~~~aN~RQgta~s~~ag~~tsakswGTGRA~aripR~kg~GT~Rs~qGa 90 (381)
T PTZ00428 31 IRPDLVQFVHTNMAKNRRQAYAVKPLAGMQHSAESWGTGRAVARIPRVSGGGTHRSGQGA 90 (381)
T ss_pred CcHHHHHHHHHHHHHhccCCCCcCCCCCCCCCceecCCCCCccccccccCCCCCcCcccc
Confidence 4566666677666777777653 33444579999999999999 999 888888854
No 14
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=62.31 E-value=9.1 Score=35.35 Aligned_cols=57 Identities=12% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|.|+.++|+.. -+++|.|+-...++..-.+++.+++++|.......+++++++.+
T Consensus 144 kqRvaIA~vLa~~---P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 144 KQRVAIAGVLAMG---PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred eeeHHhhHHHHcC---CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 4679999999887 57888998665677677889999999986542123455555543
No 15
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=57.04 E-value=12 Score=32.57 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=36.6
Q ss_pred HhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc-chhHHHhhhcCCCceeecCCCcc
Q 023024 169 AAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV-SENVEKSSRNIGTLKMLTPRTLN 236 (288)
Q Consensus 169 ~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~-~~nl~~s~RNIp~V~v~~~~~Ln 236 (288)
.+.+++|+|++. .+| -+.+.|.+.+.++ ++.+..+|.++... +..+....++.+++.++.+..-|
T Consensus 94 ~~~~liviDEIG-~mE-l~~~~F~~~v~~~-l~s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~N 159 (168)
T PF03266_consen 94 SSSDLIVIDEIG-KME-LKSPGFREAVEKL-LDSNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEEN 159 (168)
T ss_dssp HCCHEEEE---S-TTC-CC-CHHHHHHHHH-HCTTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTT
T ss_pred CCCCEEEEeccc-hhh-hcCHHHHHHHHHH-HcCCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhH
Confidence 556799999975 233 3444555555443 22223456666555 66788999999999998877766
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=50.39 E-value=27 Score=32.29 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
..|.|+.-||+.. -.+++-|+-+..++....+.+.++|+.+.-.....+++|+++
T Consensus 148 qQRVAIARAL~~~---P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 148 QQRVAIARALINN---PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHHHHHhcC---CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4567777777654 567888887767888889999999998854322234555543
No 17
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.83 E-value=27 Score=32.53 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=40.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 145 RDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 145 Rd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
+.++.-. .+|++|..||+. +-+++++|+-...++..-.+.+.++|+.+.-.....+++++++.+
T Consensus 144 ~~LSgGq---~qrv~lAraL~~---~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 144 FELSGGQ---MRRVAIAGVLAM---EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred ccCCHHH---HHHHHHHHHHHc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4444432 466888888875 357889998776677666677888887763211123566665543
No 18
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=47.00 E-value=37 Score=32.15 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+|+..||+.. -.++++|+-...++..-.+.+.++|+.+. .....+++|+++.+
T Consensus 171 kqrvalA~aL~~~---P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~~ 226 (305)
T PRK13651 171 KRRVALAGILAME---PDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLD 226 (305)
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCHH
Confidence 4668888888765 57889998766677666678888888763 11223566666543
No 19
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=45.79 E-value=46 Score=25.78 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhC-------CcEEEeccCCCCCCccHHHHHHHHHH
Q 023024 156 KRLAISTAIASAAAAE-------NTIVVEEFDGKFERPKTKEFIEAMRR 197 (288)
Q Consensus 156 rrlAl~sALs~k~~~~-------~liVVd~~~~~~e~~KTK~~~~~Lk~ 197 (288)
--+||..||+..+... .++++|+--..++...++.++++|++
T Consensus 42 ~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 42 FYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp HHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3578888888888763 78888875445777888888888764
No 20
>PHA02324 hypothetical protein
Probab=44.28 E-value=16 Score=25.61 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=21.6
Q ss_pred hCCCCc-ccccccceecCCCCCCcccCC
Q 023024 93 NKRRGT-ASTLTRGEVRGGGRKPYSQKK 119 (288)
Q Consensus 93 ~~RqGT-a~TKtR~EV~GsgRKP~~QKG 119 (288)
+-|||. .+||..+..+-+.||||+..|
T Consensus 19 ~TRQG~G~~TKysATsRN~akK~YRGQG 46 (47)
T PHA02324 19 KTRQGQGKNTKYSATSRNNAKKPYRGQG 46 (47)
T ss_pred cccccCCccceeeeeccccccCcccCCC
Confidence 457776 588999999999999998544
No 21
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=42.99 E-value=42 Score=29.84 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+. +-+++++|+-...++......+.++|+.+.-.....++++.++.
T Consensus 151 ~qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 151 RQRVAIARALVN---NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 356777777776 35788999876667766677788888876321112345555543
No 22
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=42.95 E-value=51 Score=28.26 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+.-. ...++++.++.
T Consensus 133 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH~~ 187 (190)
T TIGR01166 133 KKRVAIAGAVAM---RPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeecc
Confidence 456777777764 45788999876667766677888888876321 12355555543
No 23
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=41.84 E-value=55 Score=28.51 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-+++++|+-...++..-.+.+.++|+.+.-. ...++++.++
T Consensus 138 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~ 191 (213)
T cd03235 138 QQRVLLARALVQ---DPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHD 191 (213)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 456777777764 46889999877667766677788888876321 1234555544
No 24
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.62 E-value=40 Score=31.36 Aligned_cols=57 Identities=11% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+++..||+.. -.++++|+-...++..-...+.++|+.+.-.....+++++++.+
T Consensus 150 ~qrv~iAraL~~~---P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 150 KRRVAIAGVVAME---PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4568888888654 57889998776677766778888887763211123566666543
No 25
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.52 E-value=49 Score=29.05 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -++++.|+-...++......+.++|+.+.-.....++++.++
T Consensus 137 ~qrl~la~al~~~---p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 137 RQRVALARALAVD---PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHHHHHcC---CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3567777777763 578889987666777777788888877622111234555544
No 26
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=40.16 E-value=69 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++......+.++|+.++ ..++++.++
T Consensus 76 ~~rv~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~~----~til~~th~ 126 (144)
T cd03221 76 KMRLALAKLLLE---NPNLLLLDEPTNHLDLESIEALEEALKEYP----GTVILVSHD 126 (144)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHcC----CEEEEEECC
Confidence 456777777755 357888898665566655667778888873 235555544
No 27
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=39.58 E-value=75 Score=27.59 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+++..||+.. -+++++|+-...++....+.+.++|+.+.-. ...++++.++.
T Consensus 118 qrv~laral~~~---p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~ 171 (194)
T cd03213 118 KRVSIALELVSN---PSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCc
Confidence 456666666653 4788899876667766677788888876321 12244554543
No 28
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.43 E-value=44 Score=30.97 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+.-.....+|+++++.+
T Consensus 149 ~qrv~laral~~~---P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 149 KQRVAIAGILAVE---PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 4567777777764 57889998766677777778888888763211123555555543
No 29
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.34 E-value=49 Score=30.70 Aligned_cols=56 Identities=13% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+|+..||+.. -+++++|+-...++..-...+.++|+.+.-.....+|+++++.
T Consensus 151 ~qrv~laraL~~~---p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 151 MRKIAIVSILAMN---PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4567888887764 5788999876666655556777788776321112456666553
No 30
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=38.47 E-value=77 Score=33.42 Aligned_cols=104 Identities=24% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCCCCCcccC---------CCCccccCCCCCCCccCcccccCCCCCc--cccccCHHHHHHHHHHHHHHHHHhCCcEEEe
Q 023024 109 GGGRKPYSQK---------KTGRARRGSNRTPLRPGGGVVFGPKPRD--WSIKINKKEKRLAISTAIASAAAAENTIVVE 177 (288)
Q Consensus 109 GsgRKP~~QK---------GTGRAR~Gs~rsP~~rGGGvafGPkPRd--~~~klNkK~rrlAl~sALs~k~~~~~liVVd 177 (288)
.+.+|-|+|- +.+|=-.+..+-|.|+-+|.++.|.||- ..+.+.--.++.+|.-+|...+ ..+++|
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~--~ppiII- 522 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF--DPPIII- 522 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC--CCCEEE-
Confidence 4445566774 2244445568899999999999999963 3344555556788888888875 344444
Q ss_pred ccCCCCCCccHHHHH-HHHHHcCCCCCCceEEEEec----cchhHHHhhhc
Q 023024 178 EFDGKFERPKTKEFI-EAMRRWGLDPKQKATFLVME----VSENVEKSSRN 223 (288)
Q Consensus 178 ~~~~~~e~~KTK~~~-~~Lk~lg~~~~~k~LiV~~~----~~~nl~~s~RN 223 (288)
| +...|+-+++ +.|.++|+ ++..++.. ..++....+|+
T Consensus 523 -F---vN~kk~~d~lAk~LeK~g~----~~~tlHg~k~qeQRe~aL~~fr~ 565 (673)
T KOG0333|consen 523 -F---VNTKKGADALAKILEKAGY----KVTTLHGGKSQEQRENALADFRE 565 (673)
T ss_pred -E---EechhhHHHHHHHHhhccc----eEEEeeCCccHHHHHHHHHHHHh
Confidence 1 2334555544 46788886 45666642 23455555666
No 31
>PF13514 AAA_27: AAA domain
Probab=38.38 E-value=85 Score=35.12 Aligned_cols=82 Identities=12% Similarity=0.231 Sum_probs=54.2
Q ss_pred cccccCCCCCccccccCHHHHHHHHHHHHHHHH-H--hCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 136 GGVVFGPKPRDWSIKINKKEKRLAISTAIASAA-A--AENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 136 GGvafGPkPRd~~~klNkK~rrlAl~sALs~k~-~--~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|..+++ -.++..- +-+--||||.|+...+ . ...|||+||.--.||...++.++++|..++-. .-+++++..
T Consensus 1017 ~G~~~~~--~~LS~GT-~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~--~QVI~FTch 1091 (1111)
T PF13514_consen 1017 DGERVPV--EELSRGT-RDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR--RQVIYFTCH 1091 (1111)
T ss_pred CCeEeeH--HHhCHHH-HHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC--CeEEEEecc
Confidence 4444544 2233333 3456699999999999 2 34679999865457889999999999998642 336666632
Q ss_pred cchhHHHhhhcC
Q 023024 213 VSENVEKSSRNI 224 (288)
Q Consensus 213 ~~~nl~~s~RNI 224 (288)
..+...++.+
T Consensus 1092 --~~l~~~a~~~ 1101 (1111)
T PF13514_consen 1092 --EHLVELAREV 1101 (1111)
T ss_pred --HHHHHHHHHh
Confidence 3455445554
No 32
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=38.19 E-value=76 Score=26.89 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|++++. .+++++++
T Consensus 97 ~~rv~laral~~---~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----tiiivsh~ 147 (166)
T cd03223 97 QQRLAFARLLLH---KPKFVFLDEATSALDEESEDRLYQLLKELGI----TVISVGHR 147 (166)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCccccCHHHHHHHHHHHHHhCC----EEEEEeCC
Confidence 456777777764 4578889987656666556677788888742 35555554
No 33
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.83 E-value=62 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+|+..||+.. -.++++|+-...++..-.+.+.++|+.+.-. ...+|+++++.
T Consensus 150 kqrvaiA~aL~~~---p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~ 204 (288)
T PRK13643 150 MRRVAIAGILAME---PEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLM 204 (288)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH
Confidence 4568888888663 5788999876666655566777888776321 12356666553
No 34
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.62 E-value=49 Score=28.89 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+. +-.++++|+-...++......+.++|+.+.-.....++++.++.
T Consensus 146 ~qrv~la~al~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 146 QQRVAIARALAN---DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHHHHHcc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 345667777665 35788899876667766677888888876321112345555543
No 35
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=37.50 E-value=51 Score=28.79 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|+.+.-. ...+++++++
T Consensus 142 ~qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~ 195 (218)
T cd03266 142 RQKVAIARALVH---DPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHI 195 (218)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 456777777764 35788999876667766677888888876321 1234555444
No 36
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.45 E-value=59 Score=28.78 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++..-...+.++|+.+.-.....+++++++
T Consensus 150 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 150 QQRVAIARALMQ---QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456777777775 4578899987666776566677788877632111234555554
No 37
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=37.41 E-value=43 Score=32.06 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++|.|+-...++..-.+.++++|+.+.-.....+|||+++
T Consensus 160 ~QRv~iArAL~~~---P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 160 RQRIAIARALMLD---PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3457777777664 478899987766777777788888877632111246677655
No 38
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=37.40 E-value=51 Score=28.65 Aligned_cols=55 Identities=11% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|+.+.-.....+++++++
T Consensus 136 ~qr~~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 136 RQRVALGRAIVR---EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 456777777765 3578889987666776666677788877632111235555554
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.16 E-value=43 Score=29.21 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 136 ~qrl~la~al~~~---p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 136 QQRVALARALARE---PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4557777777653 578889987666776666778888877632111234555544
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=36.96 E-value=58 Score=28.46 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.-. ...+++|+++
T Consensus 144 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~ 197 (216)
T TIGR00960 144 QQRVAIARAIVHK---PPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHD 197 (216)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4557777777664 5788899876667766667788888876321 1234555554
No 41
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=36.87 E-value=63 Score=28.46 Aligned_cols=55 Identities=11% Similarity=0.279 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-+++++|+-...++......+.++|+.+.-.....++++.++
T Consensus 152 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 152 QQRVALARAFNG---RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456777777775 3578999987666776666677788877632111235555554
No 42
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=36.81 E-value=51 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. +.+++++|+-...++......+.++|+.+.-.....+++++++
T Consensus 148 qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 148 QRVAIARALVN---QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHHHHhC---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 55677776665 3578899987666776666778788877632111234555554
No 43
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=36.67 E-value=65 Score=28.55 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|+.+.-. ...++++.++
T Consensus 150 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~ 203 (243)
T TIGR01978 150 KKRNEILQMALL---EPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHY 203 (243)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEec
Confidence 456788888765 35788999877677777777888999887321 1234555554
No 44
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.39 E-value=58 Score=31.09 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+|+..||+.. -.++++|+-...++..-...+.++|+.+.-. ...+++|+++
T Consensus 182 kqRvaiAraL~~~---p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd 235 (320)
T PRK13631 182 KRRVAIAGILAIQ---PEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHT 235 (320)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 4567888888664 5788999876667766666777888776321 2235666555
No 45
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=36.29 E-value=52 Score=31.44 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
+|.++..||+. +-++++.|+-...+|..-...+.++|+.+.-.....+|||+++.+
T Consensus 160 QRv~iArAL~~---~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 160 QRVMIAMAIAC---RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677777765 357889998766677666778888888763211224677766543
No 46
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=35.93 E-value=54 Score=29.92 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++++|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 153 ~qrv~laral~~~---p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 153 RQRAWIAMLVAQD---SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4567777777763 578889987666776666778888877632111234555554
No 47
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=35.81 E-value=58 Score=28.50 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|+.+.-.....+++++++
T Consensus 151 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 151 RQRVAIARALAL---NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 455777777765 3578899987666776667778888887632101234555544
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.74 E-value=59 Score=28.56 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||... -.++++|+-...++..-...+.++|+.+.-.....+++++++.
T Consensus 137 ~qr~~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 137 RRRLEIARSLVHR---PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4556777777754 5788899876667766666777888776321112355555543
No 49
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=35.74 E-value=73 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
+|+++..||+.. -+++++|+-...++..-.+.+.++|+.+.
T Consensus 160 qrl~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (236)
T cd03267 160 MRAEIAAALLHE---PEILFLDEPTIGLDVVAQENIRNFLKEYN 200 (236)
T ss_pred HHHHHHHHHhcC---CCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 455666666653 47888998776777777778888888873
No 50
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.72 E-value=48 Score=29.59 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++....+.+.++|+.+.-.....++++.++
T Consensus 142 ~qrl~la~al~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 142 RQRVALARALAVE---PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4557777777653 578889987666776666777788877632111234555554
No 51
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=35.49 E-value=88 Score=26.59 Aligned_cols=54 Identities=7% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -+++++|+-...++....+.+.++|..+. . ...++++.++.
T Consensus 104 ~qrv~laral~~~---p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~ 157 (178)
T cd03247 104 RQRLALARILLQD---APIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHL 157 (178)
T ss_pred HHHHHHHHHHhcC---CCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCH
Confidence 4567777777754 57888998766677666677888888873 2 22345555443
No 52
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.31 E-value=17 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=14.1
Q ss_pred CCCccCcccccCCCC---CccccccCH
Q 023024 130 TPLRPGGGVVFGPKP---RDWSIKINK 153 (288)
Q Consensus 130 sP~~rGGGvafGPkP---Rd~~~klNk 153 (288)
|.+|+-|- ++||+. -|..-|.-+
T Consensus 1169 saLW~~~s-~~~~~Hsf~ed~~vkFsn 1194 (1516)
T KOG1832|consen 1169 SALWDASS-TGGPRHSFDEDKAVKFSN 1194 (1516)
T ss_pred HHHhcccc-ccCccccccccceeehhh
Confidence 45788765 999973 344445443
No 53
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.30 E-value=63 Score=29.92 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 156 ~qrv~laral~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 156 KRRVALAGIIAMD---GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4567777777764 578999987766776666777788877632111234555554
No 54
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=35.27 E-value=98 Score=27.30 Aligned_cols=55 Identities=5% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -+++++|+-...++..-.+.+.++|+.+.-. ...+++++++.
T Consensus 149 ~qrl~laral~~~---p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~ 203 (226)
T cd03234 149 RRRVSIAVQLLWD---PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQP 203 (226)
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 4567777777764 5788999876667766677888888776321 12244444443
No 55
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=35.11 E-value=78 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++......+.++|..+
T Consensus 133 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 133 QRRLALARLWLSR---APLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 4556777776653 5788999877677766677788888876
No 56
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.03 E-value=60 Score=28.79 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 142 ~qrv~ia~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 142 KKRVALARALALD---PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred HHHHHHHHHHhcC---CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 4557777777653 578899987666776666677788877632111234555554
No 57
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.79 E-value=79 Score=27.94 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||+.. -+++++|+-...++..-.+.+.++|..+.
T Consensus 143 ~~rl~la~aL~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 143 KQRVAIARAILKN---PPILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 4667888887764 57889998766677666677888888763
No 58
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.79 E-value=55 Score=30.15 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+++..||+.. -++++.|+-...++....+.+.++|+.+.-.....+++++++.+
T Consensus 146 ~qrv~lAraL~~~---p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 146 KQRVAVAGIIALR---PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4667888888765 47888998776677666777888887763211123566655543
No 59
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=34.77 E-value=70 Score=27.95 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-...+.++|+.+.-. ...++++.++
T Consensus 133 ~qrl~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 186 (207)
T PRK13539 133 KRRVALARLLVSN---RPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHI 186 (207)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4567777777664 5788899876667766666777888776211 1234555444
No 60
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=34.66 E-value=94 Score=27.01 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. ..++++|+-...++..-...+.++|+.+
T Consensus 131 ~qrl~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 131 QRRVALARLLLSG---RPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4567777777764 5788999877667766667788888776
No 61
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=34.61 E-value=67 Score=28.49 Aligned_cols=55 Identities=7% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++++|+-...++......+.++|+.+.-.....++++.++
T Consensus 143 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 143 KQRISLIRNLQFM---PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4667787777764 578889987656666556677777777532111134555544
No 62
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.55 E-value=62 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|+++..||+.. -+++++|+-...++..-.+.+.++|+.+
T Consensus 102 qrv~laral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 102 QRLALAQALLHD---PELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred HHHHHHHHHHcC---CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 567788888754 5788999877667766667788888876
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=34.49 E-value=79 Score=27.23 Aligned_cols=54 Identities=15% Similarity=0.299 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.-. ...++++.++
T Consensus 140 ~qr~~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~ 193 (206)
T TIGR03608 140 QQRVALARAILKD---PPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHD 193 (206)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 4567777777763 5788999877667776777888888886321 1234555444
No 64
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=34.44 E-value=51 Score=31.67 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -+++|.|+-...++..-.+.+.++|+.+.-.....+|||+++.
T Consensus 167 ~QRv~iArAL~~~---P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 167 CQRIGIARALILE---PKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3456777777643 5788899876667766677888888776321112467776653
No 65
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=34.41 E-value=55 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+|+..||+.. -+++++|+-...++......+.++|+.+
T Consensus 121 ~qrv~iaraL~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 121 LQRVAIAACLSKD---ADIYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3567777777753 5789999876666665566777788776
No 66
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.41 E-value=72 Score=27.74 Aligned_cols=41 Identities=10% Similarity=0.255 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+
T Consensus 134 ~qrv~ia~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 134 RQRVALARVLVR---DKPVLLLDEPFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 356777777763 46888999876666766666777888776
No 67
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.39 E-value=14 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=21.1
Q ss_pred ccchhHHHhhhcCCCceeecCC----CcchhhhcC----CCcEEEcH
Q 023024 212 EVSENVEKSSRNIGTLKMLTPR----TLNLFDILD----AETLVLTP 250 (288)
Q Consensus 212 ~~~~nl~~s~RNIp~V~v~~~~----~Lnv~dLL~----~~~lViT~ 250 (288)
..+..++-|+|-....+.-+.. .=+++||.- .-..||+.
T Consensus 1333 r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1333 RVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred ccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEec
Confidence 3455677777765443332222 236777776 23556654
No 68
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.23 E-value=70 Score=29.46 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -+++++|+-...++..-...+.++|+.+.-. ...+|+++++.
T Consensus 144 ~qrv~laraL~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~ 198 (274)
T PRK13647 144 KKRVAIAGVLAMD---PDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDV 198 (274)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4567777777764 4788999876667766666788888776321 12356665553
No 69
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.07 E-value=78 Score=29.17 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|++|..||+. .-+++++|+-...++..-...+.++|+.+.- ...+|++.++
T Consensus 167 ~qrv~LAraL~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~ 219 (274)
T PRK14265 167 QQRLCIARAIAM---KPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHN 219 (274)
T ss_pred HHHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 456777777754 4688899987666776667788888888732 2234555544
No 70
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.04 E-value=90 Score=28.02 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. .-+++++|+-...++..-.+.+.++|+.+. . ...++++.++
T Consensus 152 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~ 204 (250)
T PRK14245 152 QQRLCIARAMAV---SPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHN 204 (250)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC
Confidence 456778888765 467889998766666656667788888873 2 2234555544
No 71
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.93 E-value=78 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+. . ...+|+++++
T Consensus 153 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~ 205 (251)
T PRK14249 153 QQRLCIARVLAI---EPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHN 205 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCC
Confidence 466788888854 468889998765666655667778888773 2 2234555544
No 72
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.87 E-value=61 Score=28.95 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+....++..-...+.++|+.+.-.....+++++++
T Consensus 135 ~qrl~laral~~~---p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 135 QQRVAIARALVVN---PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred HHHHHHHHHHHcC---CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4567777777765 468889987666777777778888887632111235555554
No 73
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.84 E-value=60 Score=30.05 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||.. +-.++++|+-...++..-...+.++|+.+.-.....+|+++++.
T Consensus 147 ~qrl~laraL~~---~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 147 KKRVAIAGVLVM---EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 356777777755 35788999876666655566677888776321112355555543
No 74
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=33.76 E-value=85 Score=26.77 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+|+..||.. +-++++.|+-...++..-...+.++|+.+
T Consensus 103 ~qrl~laral~~---~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 103 RQRVLLARALAQ---EPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 456777777766 35788899876666665566777888776
No 75
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=33.71 E-value=63 Score=28.82 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++++|+-...++....+.+.++|+.+.-.....++++.++
T Consensus 120 ~qrv~la~al~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 120 KQRVAIARALSIR---PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3557777777653 578899987767777777788888877632111124555544
No 76
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=33.70 E-value=1.1e+02 Score=27.08 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHHH-HhCCcEEEeccCCCCCCccHH-HHHHHHHHcCCCCCCceEEEEec
Q 023024 158 LAISTAIASAA-AAENTIVVEEFDGKFERPKTK-EFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 158 lAl~sALs~k~-~~~~liVVd~~~~~~e~~KTK-~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|++.||+..+ ..-.++++|+....++..... .+.++|+.+.-.....+++++++
T Consensus 126 la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 126 LIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 45556665554 345788889866555544445 58888877632101124555544
No 77
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=33.66 E-value=1.1e+02 Score=26.64 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 154 KEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 154 K~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
..+|+++..||.. .-.++++|+-...++..-.+.+.++|+.+. . ...+++++++
T Consensus 130 ~~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~ 183 (207)
T cd03369 130 QRQLLCLARALLK---RPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHR 183 (207)
T ss_pred HHHHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCC
Confidence 3577888888865 457888998766666655667888888862 1 2234555544
No 78
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.65 E-value=70 Score=29.49 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-...+.++|+.+.-.....+++++++
T Consensus 143 ~qrl~laraL~~~---p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 143 KKRVAIAGVIAME---PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4567788887764 578889987666666556677788877632111134555554
No 79
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=33.54 E-value=77 Score=28.90 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|..+.-.....+++++++
T Consensus 149 ~qrv~laral~~---~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 149 RQRAWIAMVLAQ---ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 366777777775 3578999987666776666677788877632111124555544
No 80
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.40 E-value=1e+02 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+++..||+.. -.++++|+-...++......+.++|+.+.-. ...+++++++.
T Consensus 115 qrv~la~al~~~---p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~~ 168 (192)
T cd03232 115 KRLTIGVELAAK---PSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHhcC---CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 456666666653 4788899876667766666777888876321 12345555553
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.39 E-value=69 Score=30.22 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=51.0
Q ss_pred CCCCccCcccccCCCC-CccccccCHHHHHHHHHHHH--------------------------HHHH-HhCCcEEEeccC
Q 023024 129 RTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAI--------------------------ASAA-AAENTIVVEEFD 180 (288)
Q Consensus 129 rsP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sAL--------------------------s~k~-~~~~liVVd~~~ 180 (288)
.-|+.+-==+.-|.-+ +.|..+++++.|.. +..|| |-.+ .+.+++++|+-.
T Consensus 89 ~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~-v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 89 SFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred CCCcCHHHHHHccCcccccccccccHHHHHH-HHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 3455555555555544 45777777766433 33333 2222 223889999865
Q ss_pred CCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 181 GKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 181 ~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
..+|....++++++|+.|.-. ...+|+|+.|.+
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~ 200 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLG 200 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcH
Confidence 567777788999999998654 334677766643
No 82
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=33.23 E-value=58 Score=31.10 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++|.|+-...++..-.+.+.++|+.+.-.....+|||+++
T Consensus 164 ~QRv~iArAL~~~---P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 164 CQKVMIAIALANQ---PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred HHHHHHHHHHHCC---CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3456677776654 478889987666776667788888887632111235666655
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=33.11 E-value=60 Score=29.60 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-.++++|+-...++....+.+.++|+.+
T Consensus 134 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 134 RQRVGIARALAA---NPQLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 456788888765 35788999876667766677788888876
No 84
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.94 E-value=56 Score=28.89 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -.++++|+-...++....+.+.++|+.+
T Consensus 146 ~qrv~la~al~~~---p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 146 KQRVGIARALANN---PKVLLCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred HHHHHHHHHHhcC---CCEEEecCCCCcCCHHHHHHHHHHHHHH
Confidence 3567777777643 5788899876667766667777888775
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=32.92 E-value=73 Score=27.72 Aligned_cols=54 Identities=15% Similarity=0.329 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-+++++|+-...++......+.++|+.+.-. ...+++++++
T Consensus 143 ~qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~ 196 (214)
T TIGR02673 143 QQRVAIARAIVN---SPPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHD 196 (214)
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 456777777765 35788899876667766677788888876221 1234555554
No 86
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.86 E-value=95 Score=27.37 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++++|+-...++...+..+.++|+.+.- ...++++.++
T Consensus 144 ~qrv~la~al~~~---p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~ 196 (234)
T cd03251 144 RQRIAIARALLKD---PPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHR 196 (234)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecC
Confidence 4667888888754 578899987666777777888899988732 2234455444
No 87
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=32.73 E-value=1.4e+02 Score=26.84 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCce
Q 023024 155 EKRLAISTAIASAAAA-ENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLK 228 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~-~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~ 228 (288)
.+++++..||+..+.. -.++++|+-...++......+.++|+.+.- ...+++|.+. ..+..-+..+=+|+
T Consensus 172 ~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 172 RSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECC--HHHHHhCCEEEEEE
Confidence 3457777777653333 378899987666776677788888888732 2224555544 33444455554444
No 88
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=32.63 E-value=87 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++......+.++|+.+.- ...+++++++
T Consensus 155 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~ 207 (253)
T PRK14242 155 QQRLCIARALAVE---PEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHN 207 (253)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEec
Confidence 4557777777653 578899987666777677788888888732 2235555554
No 89
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.63 E-value=1.5e+02 Score=24.93 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||+. +-+++++|+-...++......+.++|+.+.
T Consensus 102 ~~rl~la~al~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 102 RQRIAIARALLR---DPPILILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCcCCCHHHHHHHHHHHHHhc
Confidence 356777777765 457889998766677666778888888873
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=32.54 E-value=96 Score=27.28 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.+++.|+-...++..-.+.+.++|+.+.- ...++++.++
T Consensus 147 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 199 (227)
T cd03260 147 QQRLCLARALANE---PEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHN 199 (227)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHhh--CcEEEEEecc
Confidence 3567777777753 578889987666777667788888888732 2234455444
No 91
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.53 E-value=79 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.-.....+++++++.
T Consensus 148 ~qrl~laral~~~---p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 148 KQRVAIAGVLALN---PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4567777777664 5788999876667766667777888776321112345555543
No 92
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.46 E-value=99 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+
T Consensus 124 ~qrl~laral~~~---p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 124 RKRVSIAEALVSR---ASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred HHHHHHHHHHhhC---CCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 3556777777764 4688899876566665566788888876
No 93
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=32.43 E-value=66 Score=28.60 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+. +-+++++|+-...++..-.+.+.++|+.+
T Consensus 138 ~qrl~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 138 RRRVEIARALLH---RPALLLLDEPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 456778888775 35788999876667766667777888776
No 94
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=32.42 E-value=66 Score=27.91 Aligned_cols=54 Identities=13% Similarity=0.348 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. .-+++++|+-...++..-...+.++|+.+.-. ...+|++.++
T Consensus 140 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~ 193 (211)
T cd03225 140 KQRVAIAGVLAM---DPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHD 193 (211)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 445677777764 35788999876667766667777888776321 1234555544
No 95
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=32.39 E-value=94 Score=27.62 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||... -.++++|+-...++....+.+.++|+.+.-. ...++++.++
T Consensus 149 qrv~laral~~~---p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~ 201 (224)
T cd03220 149 ARLAFAIATALE---PDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHD 201 (224)
T ss_pred HHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 455666666653 5788899876667766667788888876322 1224444444
No 96
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=32.36 E-value=85 Score=27.74 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++......+.++|+.+.-. ...++++.++
T Consensus 149 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~ 202 (236)
T cd03219 149 QRRLEIARALAT---DPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHD 202 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 355777777765 35788899876667766677788888876321 1234555544
No 97
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.36 E-value=60 Score=28.89 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.-.....++|+.++
T Consensus 136 ~qrl~laral~~~---p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 136 QQRVAIARALVNE---PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4557777777663 578889987767777777888888887632101234555544
No 98
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=32.35 E-value=74 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+
T Consensus 139 ~qrl~la~al~~~---p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 139 RRRVEIARALATN---PKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred HHHHHHHHHHhcC---CCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 3567777777664 5788899876667776677888888876
No 99
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=32.23 E-value=71 Score=30.99 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|.|+..||+.. -++++.|+-...++..-+..+.++|+++.-.....+++|+++.
T Consensus 147 QRV~IARAL~~~---P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~ 201 (343)
T TIGR02314 147 QRVAIARALASN---PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM 201 (343)
T ss_pred HHHHHHHHHHhC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 457777777753 5788889876667767777888888886321112356666553
No 100
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=32.07 E-value=72 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|++|..||.. .-+++++|+-...++..-.+.+.++|+.+
T Consensus 158 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 158 QQRVAIARALMQ---QAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred HHHHHHHHHHhc---CCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 456777777765 45789999877667777777888888876
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.06 E-value=74 Score=28.92 Aligned_cols=44 Identities=9% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHH---HhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAA---AAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~---~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+... ..-.++++|+-...++......+.++|+.+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 45677777777432 235789999876666655566777788776
No 102
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.04 E-value=66 Score=29.75 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+.-.....+|+++++.+
T Consensus 146 ~qrv~lAral~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 146 KQRVAIAGAVAMR---PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred HHHHHHHHHHHcC---CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 4667888887764 57889998776677666777888887763211123566665543
No 103
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.64 E-value=3.9e+02 Score=24.15 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=51.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEE-Ee-ccchhHHHhhhcCCC
Q 023024 149 IKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFL-VM-EVSENVEKSSRNIGT 226 (288)
Q Consensus 149 ~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV-~~-~~~~nl~~s~RNIp~ 226 (288)
|-+|-+.-.--..-||.-.+..-+++|||+.. .+ +-|++.|.+.+... +. +.+.||. ++ .....+..-.+.+..
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvIIIDEIG-pM-Elks~~f~~~ve~v-l~-~~kpliatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVIIIDEIG-PM-ELKSKKFREAVEEV-LK-SGKPLIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEEEeccc-ch-hhccHHHHHHHHHH-hc-CCCcEEEEEecccCChHHHHhhhcCC
Confidence 44554443323334555555556999999975 23 36778888877663 22 2344444 33 333457788899999
Q ss_pred cee-ecCCCcc
Q 023024 227 LKM-LTPRTLN 236 (288)
Q Consensus 227 V~v-~~~~~Ln 236 (288)
+-+ +++++=|
T Consensus 155 v~v~lt~~NR~ 165 (179)
T COG1618 155 VYVFLTPENRN 165 (179)
T ss_pred EEEEEccchhh
Confidence 888 7766655
No 104
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.46 E-value=1e+02 Score=28.27 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++....+.+.++|+.+.- ...+++++++
T Consensus 160 ~qrl~laral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~ 212 (269)
T PRK14259 160 QQRLCIARTIAI---EPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHN 212 (269)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 355777777765 3578899987666776667788888888732 2234555554
No 105
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=31.43 E-value=1e+02 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++......+.++|+.+. . ...+++++++
T Consensus 145 ~qrv~la~al~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~ 197 (238)
T cd03249 145 KQRIAIARALLR---NPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHR 197 (238)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCC
Confidence 355667777764 357888998766677767778888898874 2 2234555444
No 106
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=31.25 E-value=87 Score=27.98 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -.++++|+-...++....+.+.++|..+.-. ...+++++++
T Consensus 150 ~qrv~la~al~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~ 203 (250)
T PRK11264 150 QQRVAIARALAMR---PEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHE 203 (250)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 4567777777653 5788899876667766667788888776321 1234555444
No 107
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.19 E-value=30 Score=37.19 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=12.5
Q ss_pred EcHHHHHHHHHhhC
Q 023024 248 LTPSTVDFLNGRYG 261 (288)
Q Consensus 248 iT~~Al~~L~e~~~ 261 (288)
+|+.+++.|-.++.
T Consensus 620 ~t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 620 LTESGLQLLLDVLD 633 (784)
T ss_pred cCHHHHHHHHHHhc
Confidence 79999999988887
No 108
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=31.09 E-value=61 Score=31.04 Aligned_cols=55 Identities=7% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|.++..||+.. -++++.|+-...+|..-.+.+.++|+.+.-.....+|||+++.
T Consensus 168 QRv~IArAL~~~---P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 168 QRVMIAMALLCR---PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred HHHHHHHHHHcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 456677776543 5788899876667766677888888776321112467776654
No 109
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.03 E-value=71 Score=29.55 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -.++++|+....++..-...+.++|..+.-.....++++.++.
T Consensus 146 ~qrv~laral~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 146 KQRVAIAGVLALQ---PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 4567777777664 5789999877667766677788888876321112345555543
No 110
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=30.84 E-value=82 Score=28.18 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++..-.+.+.++|+.+.- ...++++.++
T Consensus 154 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 206 (252)
T PRK14239 154 QQRVCIARVLAT---SPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRS 206 (252)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECC
Confidence 466888888875 3578899987666776666778888888732 2234555544
No 111
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=30.83 E-value=1.1e+02 Score=26.62 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-++++.|+-...++..-.+.+.++|+.+.-. ...+++++++
T Consensus 132 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~ 185 (205)
T cd03226 132 KQRLAIAAALLS---GKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHD 185 (205)
T ss_pred HHHHHHHHHHHh---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 355777777765 35788999876667766677888888876311 1224555444
No 112
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=30.72 E-value=82 Score=27.54 Aligned_cols=41 Identities=10% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-+++++|+....++....+.+.++|+.+
T Consensus 134 ~qrl~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 134 RQRVALARCLVR---PNPILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 456778777764 46788999876667766666777888775
No 113
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.72 E-value=88 Score=27.19 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -++++.|+-...++..-...+.++|+.+
T Consensus 135 ~qrl~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 135 QRRVALARLWLTR---APLWILDEPFTAIDKQGVARLEALLAQH 175 (204)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3556776666653 5788889876667766667778888876
No 114
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=30.33 E-value=1.1e+02 Score=25.97 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||+.. -++++.|+-...++..-.+.+.++|+.+.-. ...++++.++
T Consensus 103 qrv~la~al~~~---p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~ 155 (173)
T cd03246 103 QRLGLARALYGN---PRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHR 155 (173)
T ss_pred HHHHHHHHHhcC---CCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 567777777653 5788899876667766667788888876321 1234555544
No 115
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=30.16 E-value=2.3e+02 Score=28.57 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=63.0
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHH-HHcCCCCCCceEEEEecc--chhHHHhhh
Q 023024 146 DWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAM-RRWGLDPKQKATFLVMEV--SENVEKSSR 222 (288)
Q Consensus 146 d~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~L-k~lg~~~~~k~LiV~~~~--~~nl~~s~R 222 (288)
+|.++|+|..--+.|..-|-...+.+.++.|--- +.+.-..+.+.| +++.- .++-.|..+. ...-..++|
T Consensus 280 ~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p----~I~~~eq~a~~lk~~~~~---~~i~~Vhs~d~~R~EkV~~fR 352 (441)
T COG4098 280 NWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP----EIETMEQVAAALKKKLPK---ETIASVHSEDQHRKEKVEAFR 352 (441)
T ss_pred cHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec----chHHHHHHHHHHHhhCCc---cceeeeeccCccHHHHHHHHH
Confidence 5666666655667888888888888888766211 224445566667 34432 3455565321 112335777
Q ss_pred cCCCceee---------cCCCcchhhhcCCCcEEEcHHHHHHHHHhhCC
Q 023024 223 NIGTLKML---------TPRTLNLFDILDAETLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 223 NIp~V~v~---------~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~~ 262 (288)
|=.---++ +.-.+.|. ++.+..=|+|++|+-.|..|.|-
T Consensus 353 ~G~~~lLiTTTILERGVTfp~vdV~-Vlgaeh~vfTesaLVQIaGRvGR 400 (441)
T COG4098 353 DGKITLLITTTILERGVTFPNVDVF-VLGAEHRVFTESALVQIAGRVGR 400 (441)
T ss_pred cCceEEEEEeehhhcccccccceEE-EecCCcccccHHHHHHHhhhccC
Confidence 73211000 11112222 35567788999999999999884
No 116
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=30.05 E-value=1.3e+02 Score=27.46 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 157 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~ 209 (264)
T PRK14243 157 QQRLCIARAIAV---QPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHN 209 (264)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecC
Confidence 466788888865 4678999987666776666678888888732 2234555554
No 117
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=30.04 E-value=77 Score=28.14 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++......+.++|+.+
T Consensus 151 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 191 (243)
T TIGR02315 151 QQRVAIARALAQQ---PDLILADEPIASLDPKTSKQVMDYLKRI 191 (243)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567777777653 5788899876667766666777888776
No 118
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.95 E-value=92 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -++++.|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 136 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~ 188 (211)
T cd03264 136 RRRVGIAQALVGD---PSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHI 188 (211)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 4567777777753 578889987666776667788888888742 2234444444
No 119
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.84 E-value=1.1e+02 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|++|..||+. +-+++++|+-...++....+.+.++|+.+. . ...+++++++
T Consensus 145 ~~rv~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~ 197 (229)
T cd03254 145 RQLLAIARAMLR---DPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHR 197 (229)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecC
Confidence 456778888764 357888998766677666667888888873 2 2234555544
No 120
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=29.73 E-value=80 Score=28.79 Aligned_cols=55 Identities=7% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -.++++|+-...++..-...+.++|+.+.-.....++++.++
T Consensus 126 ~qrv~laral~~~---p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 126 TQRVLLARALLNR---PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4567777777653 578889987666776666777788876522101134555544
No 121
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.69 E-value=76 Score=29.09 Aligned_cols=55 Identities=13% Similarity=0.312 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++..-...+.++|..+.-.....+++++++
T Consensus 166 ~qrv~lAral~~---~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 166 QQRVGLARALAV---DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445677777764 3578889987666776666778888877632111234555544
No 122
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=29.68 E-value=93 Score=28.08 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||+.. -+++++|+-...++..-...+.++|+.+.
T Consensus 143 ~qrl~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (256)
T TIGR03873 143 RQRVHVARALAQE---PKLLLLDEPTNHLDVRAQLETLALVRELA 184 (256)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 4667788877764 57889998766677666667778888763
No 123
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=29.60 E-value=19 Score=36.56 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=6.9
Q ss_pred cCCCcchhhhcC
Q 023024 231 TPRTLNLFDILD 242 (288)
Q Consensus 231 ~~~~Lnv~dLL~ 242 (288)
....|.+.|.|+
T Consensus 22 ~~~KlTi~Dtlk 33 (458)
T PF10446_consen 22 YKRKLTINDTLK 33 (458)
T ss_pred ccccccHHHHHH
Confidence 344566666665
No 124
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=29.53 E-value=85 Score=27.84 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+
T Consensus 135 ~qrv~laral~~~---p~lllLDEP~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 135 RQRVALARCLVRE---QPILLLDEPFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3556666666653 5788999876667766677888888776
No 125
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.43 E-value=1e+02 Score=27.09 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.-. ...++|+.++.
T Consensus 143 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~ 197 (214)
T PRK13543 143 KKRLALARLWLSP---APLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGA 197 (214)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCh
Confidence 4566776666653 4688899876666665556777788766221 12345555543
No 126
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=29.17 E-value=79 Score=30.07 Aligned_cols=56 Identities=9% Similarity=0.168 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+||..||+.. -.++++|+-...++..-.+.+.++|+.+.-.....+++|+++.
T Consensus 106 ~qRvalaraL~~~---p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 106 QQRVALARALVFK---PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred HHHHHHHHHHHhC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3567888888654 5788899866566665566677777765221112355555543
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.99 E-value=1.1e+02 Score=27.52 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. .-++++.|+-...++..-.+.+.++|+.+.-.....+++++++
T Consensus 137 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 137 AQRVSIARTLAN---NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 456778777765 4578899987666776556677777777521101235555554
No 128
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.72 E-value=91 Score=27.07 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -+++++|+-...++..-...+.++|+.+
T Consensus 134 ~qrl~la~al~~~---p~~lllDEP~~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 134 QQKVQFIAAVIHD---PELLILDEPFSGLDPVNVELLKDVIREL 174 (210)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 3456777777653 5788999876667766666777888876
No 129
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.65 E-value=1.1e+02 Score=26.05 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|+++..||... -+++++|+-...++....+.+.++|+.+
T Consensus 111 qrl~la~al~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~ 150 (182)
T cd03215 111 QKVVLARWLARD---PRVLILDEPTRGVDVGAKAEIYRLIREL 150 (182)
T ss_pred HHHHHHHHHccC---CCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence 455676666653 5788899876667766677888888876
No 130
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=28.57 E-value=98 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-++++.|+-...++....+.+.++|+.+
T Consensus 142 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 142 QQRVAIARAIVN---SPTILIADEPTGNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 455777777765 35788999876667766667777888876
No 131
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.27 E-value=95 Score=28.39 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+++.-. ...+++++++
T Consensus 142 ~qrl~laraL~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~ 195 (271)
T PRK13638 142 KKRVAIAGALVLQ---ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHD 195 (271)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4567777777654 5788899876667766667788888876321 1234555544
No 132
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=28.26 E-value=20 Score=34.35 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=8.9
Q ss_pred CccCcccccCCC
Q 023024 132 LRPGGGVVFGPK 143 (288)
Q Consensus 132 ~~rGGGvafGPk 143 (288)
+|-.||++|-=.
T Consensus 135 vw~hGGrif~Cs 146 (314)
T PF06524_consen 135 VWDHGGRIFKCS 146 (314)
T ss_pred cccCCCeEEEee
Confidence 688888888553
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=28.21 E-value=1e+02 Score=28.08 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 156 ~qrv~laral~~---~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 156 LQRINIARALAV---KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 455777777765 4578899987666776556677888877632111234555544
No 134
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=28.04 E-value=1.1e+02 Score=27.92 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++......+.++|+.+.- ...+++++++
T Consensus 169 ~qrl~laral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~ 221 (267)
T PRK14237 169 QQRLCIARAIAVK---PDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHN 221 (267)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecC
Confidence 4567777777764 468889987666776666778888888732 2234555544
No 135
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.03 E-value=76 Score=27.72 Aligned_cols=55 Identities=13% Similarity=0.295 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++..-.+.+.++|+.+.-.....+++++++
T Consensus 137 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 137 KQRVALARALAA---QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 456777777765 3578899987666776666778888877632101134555544
No 136
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=28.02 E-value=85 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. +-.++++|+-...++..-.+.+.++|+.+.-.....++|+.++
T Consensus 150 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 150 RRAALARAIAL---EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 45666666654 3578889987666776666778888887632111134555544
No 137
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=27.93 E-value=81 Score=30.31 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++....+.+.++|+.+.-.....+++++++
T Consensus 146 ~qRv~lAraL~~---~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 146 KQRVAIARALAS---NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345777777765 3578889987666776667788888888632111124555444
No 138
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=27.85 E-value=1.6e+02 Score=26.14 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=39.3
Q ss_pred CccccccCHHHHHHHHHHHHHHH-HHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 145 RDWSIKINKKEKRLAISTAIASA-AAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 145 Rd~~~klNkK~rrlAl~sALs~k-~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+.++... .+|+++..||+.. .....++++|+-...++....+.+.+.|+.+.- ...+|++..
T Consensus 157 ~~lS~G~---~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~~h 219 (243)
T cd03272 157 QQLSGGQ---KSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITTTF 219 (243)
T ss_pred cccCHHH---HHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEec
Confidence 4444433 4678888888753 334578999987666676666678888888632 245555443
No 139
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=27.76 E-value=1.1e+02 Score=27.73 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.-. ...+++|+++
T Consensus 158 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~ 211 (257)
T PRK10619 158 QQRVSIARALAME---PEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE 211 (257)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 4567777777764 5788899876667766666777888776321 1234555554
No 140
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=27.70 E-value=1.1e+02 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -+++++|+-...++....+.+.++|+.+.-. ...++++.++
T Consensus 148 ~qrv~laraL~~~---p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~ 201 (272)
T PRK15056 148 KKRVFLARAIAQQ---GQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHN 201 (272)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 4567777777653 5788999876667766666778888877321 1234555444
No 141
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.69 E-value=75 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -.+++.|+-...++......+.++|+.+
T Consensus 141 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 141 QQRVGVARALAAD---PPLLLMDEPFGALDPITRDQLQEEFKRL 181 (242)
T ss_pred HHHHHHHHHHhcC---CCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 4557777777753 5788899876667766667777888876
No 142
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=27.64 E-value=1.4e+02 Score=26.09 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -++++.|+-...++......+.++|+.+.- ...++++.++.
T Consensus 146 ~qrl~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~ 199 (220)
T cd03245 146 RQAVALARALLND---PPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRP 199 (220)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH
Confidence 4567777777653 578899987666776667778888888632 22344555443
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.59 E-value=1e+02 Score=28.27 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||... -.+++.|+-...++..-...+.++|+.+.-.....++|+.++.
T Consensus 148 ~qrl~laral~~~---p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 148 KQRVAIASVLALN---PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 3556777776653 4788889876667776677888888876321112345555553
No 144
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=27.57 E-value=1.4e+02 Score=26.38 Aligned_cols=52 Identities=12% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. +-+++++|+-...++..-...+.++|+.+. . ...++++.++
T Consensus 145 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~ 196 (237)
T cd03252 145 QRIAIARALIH---NPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHR 196 (237)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCC
Confidence 56777777765 357899998766677777778888898873 2 2234444444
No 145
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=27.53 E-value=1.2e+02 Score=26.92 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+.-. ...+++++++
T Consensus 151 ~qrv~laral~~~---p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~ 204 (248)
T PRK09580 151 KKRNDILQMAVLE---PELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHY 204 (248)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 3557777777664 5788899877667776677788888776321 1234555544
No 146
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.46 E-value=1e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++......+.++|+.+
T Consensus 106 ~qr~~la~al~~~---p~llilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 106 QQRVALARALAMD---PDVLLLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred HHHHHHHHHHHCC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3456666666653 5788899876566666666777888776
No 147
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=27.45 E-value=75 Score=30.84 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccch
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE 215 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~ 215 (288)
.+|.||..||+.. -+++++|+-...++..-.+.+.+.|+.+.-.....+++|+++.++
T Consensus 142 ~QRVaLARaL~~~---P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 199 (351)
T PRK11432 142 QQRVALARALILK---PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199 (351)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 4567788877653 578889886545665445566666766521111235666555443
No 148
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=27.39 E-value=91 Score=27.75 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||.. +-.++++|+....++..-.+.+.++|+.+.-. ...+++++++.
T Consensus 142 ~qrv~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~ 196 (240)
T PRK09493 142 QQRVAIARALAV---KPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 455677777764 35788999876666765566777888776311 12345555543
No 149
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=27.38 E-value=71 Score=31.10 Aligned_cols=56 Identities=9% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+||..||+.. -+++++|+-...++..-.+.+.++|+.+--.....+++|+++.
T Consensus 139 ~QRvaLAraL~~~---P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 139 RQRVAIGRTLVAE---PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 4567888888753 5788999866556655556677777765211011345555543
No 150
>PRK10908 cell division protein FtsE; Provisional
Probab=27.20 E-value=1.1e+02 Score=26.94 Aligned_cols=41 Identities=12% Similarity=0.396 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++......+.++|+.+
T Consensus 143 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 143 QQRVGIARAVVNK---PAVLLADEPTGNLDDALSEGILRLFEEF 183 (222)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 4456777777653 5788999876667766667788888876
No 151
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=27.12 E-value=1.2e+02 Score=25.48 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.
T Consensus 88 ~qrl~laral~~~---p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 88 RQMVEIARALARN---ARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred HHHHHHHHHHhcC---CCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 3456666666653 47888998766677666677888888773
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.07 E-value=1.1e+02 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+
T Consensus 143 ~qrl~la~al~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~ 183 (237)
T PRK11614 143 QQMLAIGRALMS---QPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183 (237)
T ss_pred HHHHHHHHHHHh---CCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 355677777765 35788899876667766666777888776
No 153
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=27.02 E-value=81 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+. +-.++++|+-...++......+.++|+.+
T Consensus 131 ~qrv~laral~~---~p~vllLDEPt~~LD~~~~~~l~~~l~~~ 171 (230)
T TIGR02770 131 LQRVMIALALLL---EPPFLIADEPTTDLDVVNQARVLKLLREL 171 (230)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 556777777765 35788999876566655566777888776
No 154
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=27.01 E-value=1.4e+02 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++..-.+.+.++|+.+.- ...++|+.++
T Consensus 173 ~qrv~laraL~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~ 225 (271)
T PRK14238 173 QQRLCIARCLAI---EPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHN 225 (271)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcC
Confidence 356777777765 4578899987666776666778888888732 2234555444
No 155
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=27.00 E-value=97 Score=27.02 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-.++++|+-...++......+.++|+.+.-. ...+++++++
T Consensus 138 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 191 (222)
T cd03224 138 QQMLAIARALMS---RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQN 191 (222)
T ss_pred HHHHHHHHHHhc---CCCEEEECCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 345677777654 35788899876667777777888888876321 1234455444
No 156
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=26.96 E-value=1e+02 Score=27.70 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -++++.|+-...++..-.+.+.++|..+
T Consensus 159 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~L~~~ 199 (255)
T PRK11300 159 QRRLEIARCMVTQ---PEILMLDEPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 3456666666554 5788999876667766677788888776
No 157
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.86 E-value=1.2e+02 Score=28.17 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=39.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 145 RDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 145 Rd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+.++.-. .+|++|..||+.. -++++.|+-...++..-.+.+.++|+.+.- ....+|+++++
T Consensus 144 ~~LSgGq---~qrl~laral~~~---p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~ 204 (287)
T PRK13641 144 FELSGGQ---MRRVAIAGVMAYE---PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN 204 (287)
T ss_pred ccCCHHH---HHHHHHHHHHHcC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 4455443 4567788777764 578899987766776667788888887631 11234555544
No 158
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=26.76 E-value=94 Score=26.92 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+
T Consensus 132 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 132 KQRLGIALALLGN---PDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred HHHHHHHHHHhcC---CCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3456777777653 4688899876667766666777888776
No 159
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=26.69 E-value=1e+02 Score=27.06 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+.-. ...+++++++
T Consensus 131 ~rv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~ 183 (223)
T TIGR03740 131 QRLGIAIALLN---HPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHI 183 (223)
T ss_pred HHHHHHHHHhc---CCCEEEECCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 45666666665 35788899876667766667788888876321 1224455444
No 160
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=26.67 E-value=89 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -++++.|+-...++..-.+.+.++|..+
T Consensus 154 ~qrv~laral~~~---p~vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 154 QQRLQIARNLVTR---PRLVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 4567777777654 4788889876667766666777888765
No 161
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.66 E-value=1.1e+02 Score=27.75 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +.+++++|+-...++..-...+.++|+.+.- ...+++++++
T Consensus 170 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~ 222 (268)
T PRK14248 170 QQRLCIARTLAM---KPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHN 222 (268)
T ss_pred HHHHHHHHHHhC---CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeC
Confidence 456777777764 4678899987666776666677888888732 2234555554
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.64 E-value=1.3e+02 Score=27.12 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.- ...+++++++
T Consensus 156 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~ 208 (254)
T PRK14273 156 QQRLCIARTLAI---EPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHN 208 (254)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 355777777764 3578899987666776666678888888732 2234555554
No 163
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.58 E-value=1.8e+02 Score=27.71 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred CccccccCHHHHHHHHH-------------------------HHHHHHHHhC-CcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 145 RDWSIKINKKEKRLAIS-------------------------TAIASAAAAE-NTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 145 Rd~~~klNkK~rrlAl~-------------------------sALs~k~~~~-~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
|..+--.+|+++..|+. .|+|-.+.|+ ++|.-|+-...++...++.+.+.|+++
T Consensus 114 ~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 114 RSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 44444556788877764 3444444333 666667655567778899999999988
Q ss_pred CCCCCCceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHH----HHHHHHhhCC
Q 023024 199 GLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPST----VDFLNGRYGV 262 (288)
Q Consensus 199 g~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~A----l~~L~e~~~~ 262 (288)
+-...-.+++..++.|-.. .=|.+|=+ +++.+||+...+ -+.+++.|+.
T Consensus 194 n~~~g~Tvi~nLH~vdlA~-~Y~~Riig--------------l~~G~ivfDg~~~el~~~~~~~iYg~ 246 (258)
T COG3638 194 NQEDGITVIVNLHQVDLAK-KYADRIIG--------------LKAGRIVFDGPASELTDEALDEIYGN 246 (258)
T ss_pred HHHcCCEEEEEechHHHHH-HHHhhheE--------------ecCCcEEEeCChhhhhHHHHHHHhcc
Confidence 6542222333345443211 12222222 456777777776 5667777876
No 164
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.44 E-value=1.1e+02 Score=28.18 Aligned_cols=55 Identities=5% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+.. -.+++.|+-...++......+.++|+.+.-. ...+|+++++.
T Consensus 142 ~qrv~laral~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~ 196 (274)
T PRK13644 142 GQCVALAGILTME---PECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNL 196 (274)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 4567777777664 5788899876666655556777888776321 12355555553
No 165
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=26.35 E-value=90 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|.||..||+. +-+++++|+-...++..-...+.++|+.+.-.....+++|+++.
T Consensus 142 ~QRvalArAL~~---~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 142 KQRVALARALAV---EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 456778888765 35788899865556655555666777765221111355665543
No 166
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=26.35 E-value=1.1e+02 Score=30.37 Aligned_cols=58 Identities=10% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccch
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE 215 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~ 215 (288)
.+|.+|..||+. +-.+++.|+-...++..-.+++.++|..+.-.....++||+++.++
T Consensus 170 ~QRV~LARALa~---~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 170 QQRVGLARAFAM---DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 456778888764 3578889986655666666778788877632111235666655443
No 167
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=26.31 E-value=1.7e+02 Score=25.47 Aligned_cols=53 Identities=6% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-+++++|+-...++..-...+.++|+.+.- +..++++.++
T Consensus 139 ~qrv~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 191 (220)
T cd03263 139 KRKLSLAIALIG---GPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHS 191 (220)
T ss_pred HHHHHHHHHHhc---CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 356777777764 4578889987666776667788888888742 2224444444
No 168
>PF09880 DUF2107: Predicted membrane protein (DUF2107); InterPro: IPR011317 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaE transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=26.26 E-value=20 Score=27.88 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=16.9
Q ss_pred ccccCCCCCccccc-cCHHHHHHHH
Q 023024 137 GVVFGPKPRDWSIK-INKKEKRLAI 160 (288)
Q Consensus 137 GvafGPkPRd~~~k-lNkK~rrlAl 160 (288)
|.+|||+++|+..+ +|-.+-..++
T Consensus 14 gt~~GP~~~dpl~R~lN~Evp~~Gv 38 (76)
T PF09880_consen 14 GTVFGPRVKDPLIRLLNTEVPAVGV 38 (76)
T ss_pred HHhcCCCCCCHHHHHHhcccchhhH
Confidence 67899999998765 6655544443
No 169
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=26.18 E-value=96 Score=27.71 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+++++..||... -.++++|+....++..-.+.+.++|+.+.-.....++++.++
T Consensus 136 ~qrl~laral~~~---p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~ 190 (237)
T TIGR00968 136 RQRVALARALAVE---PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190 (237)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5667777777764 478889987766776666778888887532101234555544
No 170
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=25.94 E-value=87 Score=30.57 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCC-CCceEEEEeccch
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDP-KQKATFLVMEVSE 215 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~-~~k~LiV~~~~~~ 215 (288)
.+|.||..||+.. -+++++|+-...++..-.+.+.+.|+.+--.. ...+|+|+++.++
T Consensus 143 ~QRvaLARAL~~~---P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 143 QQRIAIARAIAIE---PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4567888887653 57888988655566655667777777652210 1135666655443
No 171
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.92 E-value=1e+02 Score=27.95 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. .-.++++|+-...++....+.+.++|+.+.......+++++++
T Consensus 156 ~qrv~laral~~---~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~ 210 (261)
T PRK14258 156 QQRLCIARALAV---KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210 (261)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456777777764 3578889987656665556677777876532111234555544
No 172
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=25.88 E-value=1.3e+02 Score=27.27 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-...+.++|+.+. . ...++++.++
T Consensus 154 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~ 206 (258)
T PRK14241 154 QQRLCIARAIAVE---PDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHN 206 (258)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecC
Confidence 3567777777654 57889998766677666667778888873 2 2234555444
No 173
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=25.78 E-value=2e+02 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=15.8
Q ss_pred CCcEEEcHHHHHHHHHhhCCC
Q 023024 243 AETLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 243 ~~~lViT~~Al~~L~e~~~~~ 263 (288)
..-+-++.+|++.|.++++..
T Consensus 139 ~~g~~i~~~a~~~L~~~~~~d 159 (172)
T PF06144_consen 139 KNGLKIDPDAAQYLIERVGND 159 (172)
T ss_dssp HTT-EE-HHHHHHHHHHHTT-
T ss_pred HcCCCCCHHHHHHHHHHhChH
Confidence 577889999999999998753
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=25.72 E-value=1.4e+02 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++......+.++|+.+.- ...+++++++
T Consensus 152 ~qrv~laral~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~ 204 (250)
T PRK14240 152 QQRLCIARALAVE---PEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHN 204 (250)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeC
Confidence 4567777777664 478889987666666556677788888732 2234555554
No 175
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=25.55 E-value=1e+02 Score=29.71 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+|+..||+.. -.++++|+-...++..-.+.+.++|+.+--.....+++++++.
T Consensus 137 kqRvalAraL~~~---p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 137 KQRVAIGRALLSS---PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4567888887653 5788899876667766667788888776321111345555543
No 176
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=25.46 E-value=1.1e+02 Score=27.99 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.-.....++++.++
T Consensus 139 kqrl~laraL~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 139 KQRVALARALIH---RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 345677777764 4578899987666665555667778876521111234555554
No 177
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=25.43 E-value=1.1e+02 Score=27.03 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. .-+++++|+-...++..-...+.++|..+.-.....+++++++
T Consensus 138 qrv~la~al~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 138 QQLAIARALVT---RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred HHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 44666666655 3578889987666776666678888877632111234555554
No 178
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=25.33 E-value=94 Score=28.07 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-+++++|+-...++..-...+.++|+.+--.....++++.++
T Consensus 146 ~qrv~laral~~---~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 146 LQRMMIALALLC---EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 456777777764 3578889987656666556677788877621111234555544
No 179
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=25.28 E-value=1.1e+02 Score=27.46 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||.. .-.++++|+-...++..-...+.++|+.+.-.....+++++++.
T Consensus 152 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 152 QQRVAIARALAM---RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 456777777765 35788899866556654455677777765221011345555543
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.23 E-value=1.1e+02 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -.++++|+-...++......+.++|+.+.-. ...++|++++
T Consensus 151 ~qrv~la~al~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~ 204 (280)
T PRK13649 151 MRRVAIAGILAME---PKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHL 204 (280)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecc
Confidence 4557777777663 5788999876666655566777888876321 1234555544
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.20 E-value=1.5e+02 Score=27.26 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++....+.+.++|+.+.-. ...+|++.++
T Consensus 143 ~qrv~laral~~---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~ 196 (275)
T PRK13639 143 KKRVAIAGILAM---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHD 196 (275)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 456777777755 35788999876666655556777788776321 2235555555
No 182
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.04 E-value=1.5e+02 Score=26.58 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+||..||... -.++++|+-...++......+.++|+.+.
T Consensus 154 ~qrv~laral~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 154 QQRLCIARALAVE---PEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 3556777766653 57889998766677666667788888874
No 183
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.99 E-value=1.6e+02 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+. +.+++++|+-...++....+.+.++|+.+.- ...+|+++++.
T Consensus 156 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~ 209 (259)
T PRK14260 156 QQRLCIARALAI---KPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM 209 (259)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH
Confidence 456777777753 4678899987666665555677788887632 22355555553
No 184
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.77 E-value=1.5e+02 Score=26.58 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.
T Consensus 152 ~qrv~laral~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14247 152 QQRLCIARALAF---QPEVLLADEPTANLDPENTAKIESLFLELK 193 (250)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 456788888765 467889998766677666677888888873
No 185
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.72 E-value=1.5e+02 Score=27.07 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||.. +-+++++|+-...++......+.++|+.+.
T Consensus 155 ~qrv~laral~~---~p~llllDEPtsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 155 QQRLCIARAIAT---EPEVLLLDEPCSALDPIATRRVEELMVELK 196 (261)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 455777777753 468899998766677667778888888873
No 186
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=24.71 E-value=97 Score=30.80 Aligned_cols=57 Identities=11% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|++|..||+.. -.++++|+-...++..-.+.+.++|..+.-.....++|++++.+
T Consensus 170 ~QRv~LArAL~~~---P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 170 RQRVGLARALAIN---PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHHHHHHhcC---CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 3557777777663 47888998665666655667777887753211123555555533
No 187
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=24.56 E-value=1.7e+02 Score=26.69 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.- ...++|++++
T Consensus 169 ~qrv~laral~~~---p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~ 221 (267)
T PRK14235 169 QQRLCIARAIAVS---PEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHS 221 (267)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence 3567777777653 578899987666776667788889988732 2234555544
No 188
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=24.53 E-value=1.3e+02 Score=27.07 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+.-. ...++|++++
T Consensus 144 ~qrv~laral~~~---p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~ 197 (255)
T PRK11231 144 RQRAFLAMVLAQD---TPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHD 197 (255)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECC
Confidence 3567777777664 5788899876667765566777888776321 1234555544
No 189
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=24.42 E-value=1.8e+02 Score=25.47 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+
T Consensus 155 ~qrl~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (224)
T TIGR02324 155 QQRVNIARGFIA---DYPILLLDEPTASLDAANRQVVVELIAEA 195 (224)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 456777777764 35788999876667766667777888876
No 190
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.37 E-value=1.7e+02 Score=26.20 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 155 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~ 207 (251)
T PRK14244 155 QQRLCIARAIAV---KPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHS 207 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 356777777765 3578899987655665555567788887732 2234555554
No 191
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.30 E-value=1.6e+02 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++..-...+.++|+.+. . ...++++.++
T Consensus 160 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~ 212 (258)
T PRK14268 160 QQRLCIARTLAVK---PKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHN 212 (258)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECC
Confidence 3567777777663 57889998766677666667778888763 1 2234555554
No 192
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=24.29 E-value=1.1e+02 Score=30.09 Aligned_cols=58 Identities=10% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccch
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE 215 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~ 215 (288)
.+|.++..||+.. -.+++.|+-...++..-.+.+.+.|..+.-.....++||+++.++
T Consensus 135 ~QRV~lARAL~~~---p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 135 QQRVGLARALAAE---PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4567888888653 578888886545665555567777776532111246677666544
No 193
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.21 E-value=1.6e+02 Score=26.38 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. .-.++++|+-...++..-...+.++|+.+.- ...+++++++
T Consensus 153 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~ 205 (251)
T PRK14270 153 QQRLCIARTIAV---KPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHN 205 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcC
Confidence 466778777765 3578889987666776666778888887632 2234555444
No 194
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=24.03 E-value=96 Score=31.23 Aligned_cols=55 Identities=9% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+++..||.. +-+++++|+-...++......+.++|+.+--.....+++|+++.
T Consensus 434 qrv~laral~~---~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 488 (520)
T TIGR03269 434 HRVALAQVLIK---EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM 488 (520)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 45566666654 35788899876667766667788888765211112356665553
No 195
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.01 E-value=1.4e+02 Score=26.74 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++......+.++|+.+.- ...+++++++
T Consensus 152 ~qr~~la~al~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~ 204 (250)
T PRK14262 152 QQRLCIARALAVE---PEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHN 204 (250)
T ss_pred HHHHHHHHHHhCC---CCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCC
Confidence 3567787777764 578889987666666556677788887632 2234555544
No 196
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=23.99 E-value=1.2e+02 Score=28.05 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|+++..||... -.++++|+-...++..-...+.++|+.+.-.....+|++..+.+
T Consensus 150 ~qrv~laral~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 150 KQRVAIAGILAMR---PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 3456666666543 57888998766667655667777887762211123566655543
No 197
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=23.98 E-value=2.3e+02 Score=24.81 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHH-HHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASA-AAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k-~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+++++..||+.. +....++++|+-...++......+.++|+.+.- ...+++++++
T Consensus 120 qrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~ 175 (197)
T cd03278 120 ALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHR 175 (197)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECC
Confidence 557777777653 233478889987655666666778888887632 2235555544
No 198
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=23.97 E-value=1.2e+02 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|+++..||... -+++++|+-...++..-.+.+.++|+.+
T Consensus 120 qrv~laral~~~---p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 120 QRVLVARALATR---PSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred HHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 556777777664 5788899876667766667888888876
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.90 E-value=1.6e+02 Score=27.30 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|++|..||.. +-+++++|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 189 qrv~LAraL~~---~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~ 240 (286)
T PRK14275 189 QRLCVARTLAV---EPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHN 240 (286)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 44555555554 3478889987666666556677788887732 2234454444
No 200
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=23.89 E-value=1.1e+02 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|..+
T Consensus 155 ~qrv~laral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 155 KQRLGLARALILR---PKVIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHHHHHHHHHhC---CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 4557777777653 5788899876566665566777888776
No 201
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=23.82 E-value=1.6e+02 Score=27.78 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=41.6
Q ss_pred CccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcC----CCcEEEcHHHHH
Q 023024 185 RPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILD----AETLVLTPSTVD 254 (288)
Q Consensus 185 ~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~----~~~lViT~~Al~ 254 (288)
.||...+..+++.+|+.++ .+++|- |...++..+.+++|.|++..... +....|. ++..-+|++..+
T Consensus 86 ~pk~~~i~~~~~~l~i~~~-~~vfid-D~~~d~~~~~~~lp~~~~~~~~~-~~~~~l~~~~~~~~~~~t~ed~~ 156 (320)
T TIGR01686 86 GPKSESLRKIAKKLNLGTD-SFLFID-DNPAERANVKITLPVKTLLCDPA-ELAAILLFLNELLPLANTKEDRI 156 (320)
T ss_pred CchHHHHHHHHHHhCCCcC-cEEEEC-CCHHHHHHHHHHCCCCccCCChH-HHHHHhcccccccCccCCHHHHH
Confidence 4899999999999998754 355554 44556777777899876554211 1122222 455566666544
No 202
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.51 E-value=1.4e+02 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... ..++++|+-...++..-.+.+.+++..+
T Consensus 77 ~qrv~laral~~~---p~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 77 LQRVAIAAALLRN---ATFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred HHHHHHHHHHhcC---CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 3556776666653 5788899876556655555677777765
No 203
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.47 E-value=2e+02 Score=25.80 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-.+.+.++|+.+.- ...++++.++
T Consensus 155 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~ 207 (253)
T PRK14267 155 RQRLVIARALAM---KPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHS 207 (253)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECC
Confidence 355777777754 4578899987666777677788888888732 2224444444
No 204
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.47 E-value=1.6e+02 Score=26.48 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. ...++++|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 154 ~qrl~laral~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~ 206 (252)
T PRK14256 154 QQRLCIARTIAV---KPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHN 206 (252)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECC
Confidence 466788888865 3578889987656666556677788888732 2234455444
No 205
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=23.46 E-value=1.5e+02 Score=25.62 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+
T Consensus 141 ~qrv~la~al~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 141 QQRVAIARALAMN---PKVMLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 4456777776653 5788899876566665566777888876
No 206
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=23.37 E-value=1.1e+02 Score=29.48 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+|+..||+.. -++++.|+-...++..-...+.++|+.+--.....+++|+++
T Consensus 134 ~qRvalaraL~~~---p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 134 KQRVAIGRALLTA---PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4567777777753 578889986655665555667777776522101134555544
No 207
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=23.34 E-value=1.5e+02 Score=26.28 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+|+..||... -.++++|+-...++......+.++|+.+
T Consensus 147 ~qrv~laral~~~---p~llilDEPt~~LD~~~~~~l~~~l~~~ 187 (242)
T PRK11124 147 QQRVAIARALMME---PQVLLFDEPTAALDPEITAQIVSIIREL 187 (242)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCCCcCCHHHHHHHHHHHHHH
Confidence 4557777777664 5788899876666765566777888876
No 208
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=23.21 E-value=1.8e+02 Score=25.52 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.- ...+++++++
T Consensus 156 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~ 208 (226)
T cd03248 156 KQRVAIARALIR---NPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHR 208 (226)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 456777777765 3578899987666776666677788887632 2234555544
No 209
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.08 E-value=1.5e+02 Score=27.50 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|++|..||.. +-+++++|+-...++......+.++|+.+.- +..+|++.++
T Consensus 186 ~qrv~LAraL~~---~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~ 238 (285)
T PRK14254 186 QQRLCIARAIAP---DPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHN 238 (285)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 345666666654 3578889987666776666788888888732 2234555544
No 210
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=23.02 E-value=39 Score=31.56 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHhhhcCCCceeecCCCcchhhhcC--CCcEEEcHHHHHHHHHhhC
Q 023024 217 VEKSSRNIGTLKMLTPRTLNLFDILD--AETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 217 l~~s~RNIp~V~v~~~~~Lnv~dLL~--~~~lViT~~Al~~L~e~~~ 261 (288)
++.+|..+..+ +.. |+.-+++ ...+.+-++|++.|+|..-
T Consensus 106 VWeaCd~l~~l---p~~--n~~av~~~~~~~~~lvkDa~~El~E~~~ 147 (275)
T PF13324_consen 106 VWEACDQLKKL---PKD--NKVAVLRRLKQSRDLVKDALEELEEWDE 147 (275)
T ss_dssp HHHHHHTTTTS----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788777553 233 3333333 3456677999999999865
No 211
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=23.01 E-value=1.4e+02 Score=26.90 Aligned_cols=57 Identities=5% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHH---HH-hCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASA---AA-AENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k---~~-~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... .. +.++++.|+-...++..-.+.+.++|+.+.-. ...++++.++
T Consensus 132 ~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~ 192 (248)
T PRK03695 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHD 192 (248)
T ss_pred HHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 4567777777752 11 34789999876667766666788888876321 1234555544
No 212
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=22.99 E-value=1.1e+02 Score=29.75 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccch
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE 215 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~ 215 (288)
.+|.||..||+. +-++++.|+-...+|..-...+.+.|+++--.....+++|+++.++
T Consensus 140 ~QRvalARAL~~---~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 140 RQRVAMGRAIVR---EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE 197 (356)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 456778777764 3578889986555665545566667766521101135666655433
No 213
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=22.93 E-value=1.3e+02 Score=26.18 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|+++..||+. +-.++++|+-...++......+.++|..+
T Consensus 111 qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 111 KRNEILQLLLL---EPDLAILDEPDSGLDIDALRLVAEVINKL 150 (200)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 55677777764 35788899876667766677788888876
No 214
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=22.90 E-value=1.1e+02 Score=27.94 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+
T Consensus 157 ~qrl~laral~~~---p~lllLDEPt~~LD~~~~~~~~~~l~~~ 197 (268)
T PRK10419 157 LQRVCLARALAVE---PKLLILDEAVSNLDLVLQAGVIRLLKKL 197 (268)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 5567777777754 5788999876667766666777888765
No 215
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=22.86 E-value=1.4e+02 Score=27.84 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++....+.+.++|+.+.-. ...+++++++
T Consensus 130 ~qrv~la~al~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~ 183 (302)
T TIGR01188 130 RRRLDIAASLIH---QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHY 183 (302)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 455777777766 35788899876667765666788888876321 1234444444
No 216
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.85 E-value=1.8e+02 Score=26.05 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..--..+.++|+++.- ...+++++++
T Consensus 153 ~qr~~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~ 205 (251)
T PRK14251 153 QQRICIARALAV---RPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHN 205 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 466777777764 4678899987655665445567788887621 2234555554
No 217
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=22.77 E-value=1.5e+02 Score=26.49 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -.+++.|+-...++..-.+.+.++|+.+
T Consensus 157 ~qrv~la~al~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 157 KKRNEILQMALLD---SELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 4567777777753 5788899876667766677788888776
No 218
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.73 E-value=1.7e+02 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++..-.+.+.++|+.+.- ...+++++++
T Consensus 151 ~qrv~laral~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~ 203 (249)
T PRK14253 151 QQRLCIARTIAME---PDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHS 203 (249)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 4667777777653 578899987656666556677788888732 2234555544
No 219
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=22.63 E-value=1e+02 Score=29.83 Aligned_cols=57 Identities=11% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+|.||..||+.. -+++++|+-...++..-.+.+.+.|+++--.....+++|+++.+
T Consensus 140 ~QRvaLARaL~~~---P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 140 QQRVALARALATS---PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 4567777777764 57888888654566555566777777652110113566655443
No 220
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=22.55 E-value=1.5e+02 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+.- ...+++++++
T Consensus 150 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~ 202 (247)
T TIGR00972 150 QQRLCIARALAV---EPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHN 202 (247)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecC
Confidence 355777777775 3578899987656665556677788887632 1234555554
No 221
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=22.32 E-value=1.8e+02 Score=25.39 Aligned_cols=68 Identities=9% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTL 227 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V 227 (288)
.-.+||..|+.. +...-++|+|++...++....+.+.++|+.+.-. .-+||+. .++.+...+.++=+|
T Consensus 144 ~~~Lal~lA~~~-~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~---~Q~ii~T-h~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 144 LVALALLLALQR-YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ---SQFIITT-HNPEMFEDADKLIGV 211 (220)
T ss_dssp HHHHHHHHHHHT-CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT---SEEEEE--S-HHHHTT-SEEEEE
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc---ccccccc-ccccccccccccccc
Confidence 334444444333 2233556889998778888889999999987521 2344443 334555555554443
No 222
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=22.06 E-value=1.2e+02 Score=27.31 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. .-++++.|+-...++..-.+.+.++|+.+
T Consensus 157 ~qrl~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 157 QQRLQIARNLVT---HPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 456777777765 45788999876666665566777777765
No 223
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=22.03 E-value=19 Score=28.45 Aligned_cols=20 Identities=30% Similarity=0.465 Sum_probs=11.2
Q ss_pred CCCchhhhHHHhhcCccccc
Q 023024 267 DGDEEEEESEAREAGEESDA 286 (288)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~ 286 (288)
+|.|+|.|+||+..+|||+.
T Consensus 62 ee~egenddeedsnsees~n 81 (94)
T PF05756_consen 62 EEKEGENDDEEDSNSEESNN 81 (94)
T ss_pred HhccCCCcccccccchhccc
Confidence 44445556666666666553
No 224
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.94 E-value=2.3e+02 Score=25.32 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-.++++|+-...++..-...+.++|+.+.- ...++++.++
T Consensus 152 ~qrv~laral~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~ 204 (250)
T PRK14266 152 QQRLCIARTIAV---SPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHN 204 (250)
T ss_pred HHHHHHHHHHHc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 456777777775 3578889987666776666778888887732 2234555544
No 225
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=21.78 E-value=1.1e+02 Score=28.92 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=35.9
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCC
Q 023024 145 RDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGL 200 (288)
Q Consensus 145 Rd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~ 200 (288)
+.|+.-+ .+|+++..||... -.++++|+-...+|..--.++.++|+.+.-
T Consensus 135 ~~lS~G~---kqrl~ia~aL~~~---P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 135 RTLSGGM---KQRLSIALALLHD---PELLILDEPTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred hhcCHHH---HHHHHHHHHHhcC---CCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence 4444444 3457777777765 478899987777887777888999988754
No 226
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=21.76 E-value=5.4e+02 Score=25.63 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCceeecC-CCcchhhhcCCCcEEEcHHHH--HHHHHhh
Q 023024 184 ERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP-RTLNLFDILDAETLVLTPSTV--DFLNGRY 260 (288)
Q Consensus 184 e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~-~~Lnv~dLL~~~~lViT~~Al--~~L~e~~ 260 (288)
..|+..-+..+++.+|+.++ ..+ +++|...+ ..|++|.. +.++-+ ......++..++.+|=+-..| ..|+..+
T Consensus 271 ~KP~Peifl~A~~~lgl~Pe-ecl-~IGDS~~D-IeAAk~AG-m~~IgV~~~~~~~~l~~Ad~iI~s~~EL~~~~l~~l~ 346 (381)
T PLN02575 271 GKPDPEMFIYAAQLLNFIPE-RCI-VFGNSNQT-VEAAHDAR-MKCVAVASKHPIYELGAADLVVRRLDELSIVDLKNLA 346 (381)
T ss_pred CCCCHHHHHHHHHHcCCCcc-cEE-EEcCCHHH-HHHHHHcC-CEEEEECCCCChhHhcCCCEEECCHHHHHHHHHhhhh
Confidence 35777788888999998653 244 44444444 45666643 233322 233455554566665444433 3344444
Q ss_pred CCC
Q 023024 261 GVE 263 (288)
Q Consensus 261 ~~~ 263 (288)
.-+
T Consensus 347 ~~~ 349 (381)
T PLN02575 347 DIE 349 (381)
T ss_pred hcC
Confidence 433
No 227
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.66 E-value=1.9e+02 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. -.++++|+-...++..-...+.++|+.+
T Consensus 133 ~~rv~laral~~~---p~~lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 133 KRQVALLRLWMSK---AKLWLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 4567777777663 5788889876556655555667788775
No 228
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=21.40 E-value=2.2e+02 Score=24.45 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCcEEEeccCC-----------------CCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcC
Q 023024 162 TAIASAAAAENTIVVEEFDG-----------------KFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNI 224 (288)
Q Consensus 162 sALs~k~~~~~liVVd~~~~-----------------~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNI 224 (288)
.+++..+..+.++||||-.. .+.--.+.++++.+++.... +.++|+|+.. ...+.....+.
T Consensus 18 ~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv~~a~~~l~~~~~~-~~~v~ii~k~-~~d~~~l~~~g 95 (151)
T PF03830_consen 18 TAWVKKLNANRIIVVDDEVANDPFQKMILKMAAPAGVKLSIFSVEEAIEKLKKPEYS-KKRVLIIVKS-PEDALRLVEAG 95 (151)
T ss_dssp HHHHHHHTTSEEEEE-HHHHHSHHHHHHHHHTSHTTSEEEEE-HHHHHHHHCGGGGT-TEEEEEEESS-HHHHHHHHHTT
T ss_pred EEEhhhcccCEEEEECHHHhcCHHHHHHHHHhhcCCCceEEEEHHHHHHHHHhcccC-CceEEEEECC-HHHHHHHHhcC
Confidence 45556666677888877210 00112355777777765433 3468888754 34555666665
Q ss_pred CCceeecCCCcchhhhcC--CCcEEEcHHHHHHHHHhhC
Q 023024 225 GTLKMLTPRTLNLFDILD--AETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 225 p~V~v~~~~~Lnv~dLL~--~~~lViT~~Al~~L~e~~~ 261 (288)
..++-+++.++.-..=-+ .+.+.++++=++.|.+...
T Consensus 96 ~~i~~iNvG~~~~~~g~~~i~~~v~l~~ee~~~l~~l~~ 134 (151)
T PF03830_consen 96 VKIKEINVGNMSKKPGRKKITKNVYLSEEEIEALKELAD 134 (151)
T ss_dssp ---SEEEEEEB---TTSEEESSSBEE-HHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCccceeCCeEEECHHHHHHHHHHHH
Confidence 555544444444333111 5788888887777776554
No 229
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=21.16 E-value=1.4e+02 Score=29.98 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. .-+++++|+-...++....+.+.++|+.+.-. ...+++++++
T Consensus 402 qrv~lA~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd 454 (501)
T PRK10762 402 QKVAIARGLMT---RPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSE 454 (501)
T ss_pred HHHHHHHHHhh---CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 45666666664 35788999877677877788888888887321 1235555554
No 230
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.12 E-value=2.5e+02 Score=25.29 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|++|..||... -+++++|+-...++..-.+.+.++|+.+.- ...++++.++
T Consensus 161 ~qrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~ 213 (259)
T PRK14274 161 QQRLCIARALATN---PDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHN 213 (259)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcC
Confidence 3456666666653 578899987666776666778888888732 2224444444
No 231
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.06 E-value=2.2e+02 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||+.. ..++++|+....++..--..+.++++.+
T Consensus 86 ~~r~~l~~~l~~~---~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 86 RQRVALARALLLN---PDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 4567777777664 6788899876556644444566677665
No 232
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=21.01 E-value=1.4e+02 Score=26.12 Aligned_cols=57 Identities=9% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
.+|+++..||+..- .-+++++|+-...++..-...+.++|+.+. .....++++.++.
T Consensus 93 ~qrl~laral~~~~-~p~llLlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tvIivSH~~ 149 (176)
T cd03238 93 LQRVKLASELFSEP-PGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNL 149 (176)
T ss_pred HHHHHHHHHHhhCC-CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 35677777776530 036888998765566555667777777762 1112345555543
No 233
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.95 E-value=1.6e+02 Score=26.05 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.- ...++++.++
T Consensus 149 ~qrv~laral~~~---p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 201 (242)
T TIGR03411 149 KQWLEIGMLLMQD---PKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHD 201 (242)
T ss_pred HHHHHHHHHHhcC---CCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECC
Confidence 4456666666653 478899987666776666788888888732 2234555544
No 234
>PLN03073 ABC transporter F family; Provisional
Probab=20.92 E-value=1.8e+02 Score=31.29 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|++|..||... -+++++|+-.+.++..-...+.++|++++. .++||.++
T Consensus 351 ~rv~LA~aL~~~---p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~----tviivsHd 400 (718)
T PLN03073 351 MRIALARALFIE---PDLLLLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSHA 400 (718)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHHHHHcCC----EEEEEECC
Confidence 456777777643 578999998777787777888899999853 35555544
No 235
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=20.90 E-value=1.1e+02 Score=25.95 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc-------CCCCCCceEEEEe
Q 023024 150 KINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW-------GLDPKQKATFLVM 211 (288)
Q Consensus 150 klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l-------g~~~~~k~LiV~~ 211 (288)
|||..++ .|+.++|+... +.+|..- ..+.||.-+..++..+ ......++|++..
T Consensus 1 ~ln~~Q~-~Ai~~~~~~~~----~~~i~Gp---PGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 1 KLNESQR-EAIQSALSSNG----ITLIQGP---PGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp ---HHHH-HHHHHHCTSSE-----EEEE-S---TTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CCCHHHH-HHHHHHHcCCC----CEEEECC---CCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 4665554 56666665443 6778764 4679999998888877 1233445666653
No 236
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.89 E-value=2.1e+02 Score=26.01 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++..-.+.+.++|+.+.- ...+++|+++
T Consensus 167 ~qrv~laral~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~ 219 (265)
T PRK14252 167 QQRLCIARALATD---PEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHN 219 (265)
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecC
Confidence 4556777776663 578899987666666556677788887732 2234555444
No 237
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=20.84 E-value=1.3e+02 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHH------HHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASA------AAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k------~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+.. ..+-+++++|+-...++..-...+.++|..+.-.....++++.++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3567777777742 124688899987666776666778888877632111234555554
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.82 E-value=1.8e+02 Score=26.48 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -.++++|+-...++....+.+.++|..+.- ...++++.++
T Consensus 159 ~qrl~laral~~~---P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~ 211 (257)
T PRK14246 159 QQRLTIARALALK---PKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHN 211 (257)
T ss_pred HHHHHHHHHHHcC---CCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECC
Confidence 4567777777654 478889987666776667788888888742 2234444444
No 239
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=20.79 E-value=2.6e+02 Score=24.35 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
.+|+++..||+.. -.++++|+-...++..-.+.+.++|+.+.
T Consensus 145 ~qr~~laral~~~---p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 145 RQLLCLARALLRK---SKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4567777777653 57888998766677666677888888863
No 240
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=20.77 E-value=1.8e+02 Score=28.90 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||+. +-+++++|+-...++..-..++.++|+.+.-. ...+|++.++
T Consensus 146 QRv~IArAL~~---~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHd 198 (402)
T PRK09536 146 QRVLLARALAQ---ATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHD 198 (402)
T ss_pred HHHHHHHHHHc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 45677777753 46888999876666655556788888887421 2234444444
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=20.73 E-value=1.6e+02 Score=29.37 Aligned_cols=54 Identities=9% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||... -+++++|+-...++....+.+.++|+.+.- ....+++++++
T Consensus 147 ~qrv~iA~al~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd 200 (500)
T TIGR02633 147 QQLVEIAKALNKQ---ARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK 200 (500)
T ss_pred HHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 3567788887764 578899987767787778888888888732 11224555544
No 242
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=20.68 E-value=2e+02 Score=24.49 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCceeecCCCcc---hhhhcCCCcEE
Q 023024 171 ENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLN---LFDILDAETLV 247 (288)
Q Consensus 171 ~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Ln---v~dLL~~~~lV 247 (288)
-+++|||+.. .+.. ...-.+|+.+.-.++...+|++......+..+.+. ...++....++ +.+.|....
T Consensus 97 ~kviiide~~-~l~~---~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~g-- 168 (188)
T TIGR00678 97 RRVVIIEDAE-RMNE---AAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQG-- 168 (188)
T ss_pred eEEEEEechh-hhCH---HHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHcC--
Confidence 4788888863 1221 12223445553332223333333322333333221 12344444444 344444443
Q ss_pred EcHHHHHHHHHhhCC
Q 023024 248 LTPSTVDFLNGRYGV 262 (288)
Q Consensus 248 iT~~Al~~L~e~~~~ 262 (288)
++++|++.|-+..++
T Consensus 169 i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 169 ISEEAAELLLALAGG 183 (188)
T ss_pred CCHHHHHHHHHHcCC
Confidence 677888877776654
No 243
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=20.57 E-value=1.5e+02 Score=25.99 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||.. +-++++.|+-...++..-.+.+.++|+.+.-.....++++.++
T Consensus 148 qrv~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 148 QRVAIARALVH---RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34555555544 3478888887666776667788888887632111235555554
No 244
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=20.51 E-value=1.8e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+++..||+. +-++++.|+-...++......+.++|+.+.- ...+++++++
T Consensus 162 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~ 214 (260)
T PRK10744 162 QQRLCIARGIAI---RPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHN 214 (260)
T ss_pred HHHHHHHHHHHC---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 455677777764 3578889987666776666778888888732 2234555444
No 245
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=20.37 E-value=2e+02 Score=29.14 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|++|..||.. .-+++++|+-...++......+.++|+.++ ..+++|+++
T Consensus 445 qrv~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~tvi~vsHd 494 (530)
T PRK15064 445 GRMLFGKLMMQ---KPNVLVMDEPTNHMDMESIESLNMALEKYE----GTLIFVSHD 494 (530)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCCCCCHHHHHHHHHHHHHCC----CEEEEEeCC
Confidence 44566666554 357888998776677766778888888873 235555544
No 246
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.36 E-value=2.5e+02 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||... -+++++|+-...++..-...+.++|+.+
T Consensus 129 ~~rl~la~al~~~---p~~lllDEP~~~LD~~~~~~l~~~l~~~ 169 (195)
T PRK13541 129 QKIVAIARLIACQ---SDLWLLDEVETNLSKENRDLLNNLIVMK 169 (195)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3557777777653 5788899876556655555666777643
No 247
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=20.34 E-value=2.4e+02 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+|+++..||.. +-+++++|+-...++..-...+.++|+.+
T Consensus 143 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (241)
T PRK10895 143 RRRVEIARALAA---NPKFILLDEPFAGVDPISVIDIKRIIEHL 183 (241)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 455677777755 35788999876666655556666777765
No 248
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.27 E-value=2e+02 Score=25.76 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023024 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+|+..||... -+++++|+-...++..-.+.+.++|+.+. . ...+++++++
T Consensus 148 ~qrv~laral~~~---p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~ 200 (246)
T PRK14269 148 QQRLCIARALAIK---PKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHN 200 (246)
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecC
Confidence 3556777777664 57888998765666655667788888763 2 2234555544
No 249
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=20.18 E-value=3.1e+02 Score=23.73 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhh-cCCCceeecCCCcchhhh--cCCCcEEEcHHHHHHHHHhhC
Q 023024 188 TKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSR-NIGTLKMLTPRTLNLFDI--LDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 188 TK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~R-NIp~V~v~~~~~Lnv~dL--L~~~~lViT~~Al~~L~e~~~ 261 (288)
..++++.+++ ..+ +.++++|+... ..+..... .++ ++-+++.++...+= .-.+.|.+|++=++.|.+...
T Consensus 63 v~~a~~~l~~-~~~-~~~v~il~k~~-~d~~~l~~~g~~-i~~iNvG~~~~~~g~~~i~~~v~l~~~e~~~lk~l~~ 135 (157)
T PRK11425 63 LQKVIDNIHR-AAD-RQKILLVCKTP-ADFLTLVKGGVP-VNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKA 135 (157)
T ss_pred HHHHHHHHhc-cCC-CceEEEEECCH-HHHHHHHHcCCC-CCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHH
Confidence 5577888877 433 45688888654 34444455 333 55555555532210 114568999988888887764
Done!