Query 023025
Match_columns 288
No_of_seqs 117 out of 498
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 22.2 50 0.0017 21.9 2.1 12 72-83 41-52 (53)
2 1zoq_C CREB-binding protein, i 18.0 84 0.0029 20.2 2.4 25 24-48 4-28 (47)
3 1kbh_B CREB-binding protein, n 13.9 1.2E+02 0.0042 20.4 2.5 25 23-47 10-34 (59)
4 1v54_M VIIIB, IX, cytochrome C 12.9 1.3E+02 0.0046 19.3 2.4 20 18-37 25-44 (46)
5 2y69_M Cytochrome C oxidase po 9.3 2.6E+02 0.009 19.6 3.1 21 17-37 48-68 (70)
6 1z65_A PRPLP, prion-like prote 9.3 1E+02 0.0036 17.9 0.8 21 1-21 1-21 (30)
7 4htp_A DNA ligase 4; helical d 8.4 2E+02 0.0068 24.6 2.7 22 26-47 170-191 (240)
8 3m73_A Tellurite resistance pr 7.5 4.8E+02 0.016 22.8 5.0 46 15-61 174-219 (314)
9 2jr2_A UPF0352 protein CPS_261 6.0 4.8E+02 0.016 18.5 3.2 23 21-44 35-57 (76)
10 1pi7_A VPU protein, U ORF prot 5.9 3.8E+02 0.013 16.2 2.3 20 19-40 17-36 (36)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.17 E-value=50 Score=21.86 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 023025 72 FLESVKECYEAL 83 (288)
Q Consensus 72 y~~~ird~YeA~ 83 (288)
|++.+||+||-.
T Consensus 41 F~~aVREVYEhv 52 (53)
T 1zl8_A 41 FFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899999999963
No 2
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=17.96 E-value=84 Score=20.21 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHH
Q 023025 24 QLLSEHFLSWKKPKEQKAIIIIILM 48 (288)
Q Consensus 24 ~~i~~Hl~~y~~P~~Qr~iiRIl~m 48 (288)
..+.+-+++=+.|+.|-++++|+=-
T Consensus 4 qqLl~tlksp~sp~qqqqvl~ILks 28 (47)
T 1zoq_C 4 QDLLRTLKSPSSPQQQQQVLNILKS 28 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 3456778888899999999999743
No 3
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=13.88 E-value=1.2e+02 Score=20.36 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHH
Q 023025 23 TQLLSEHFLSWKKPKEQKAIIIIIL 47 (288)
Q Consensus 23 ~~~i~~Hl~~y~~P~~Qr~iiRIl~ 47 (288)
+..+.+-+++=+.|+.|-+++.||=
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILk 34 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILK 34 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999974
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=12.90 E-value=1.3e+02 Score=19.32 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhcCCCch
Q 023025 18 TTHFSTQLLSEHFLSWKKPK 37 (288)
Q Consensus 18 ~~~is~~~i~~Hl~~y~~P~ 37 (288)
++++---=+..|+.+|.+.+
T Consensus 25 ~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 25 SFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHTHHHHHTC-
T ss_pred HHHhhHHHHHHHHHHhcccc
Confidence 44444344557999998873
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.30 E-value=2.6e+02 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhcCCCch
Q 023025 17 LTTHFSTQLLSEHFLSWKKPK 37 (288)
Q Consensus 17 l~~~is~~~i~~Hl~~y~~P~ 37 (288)
+++++-.--|..|+.+|.+.+
T Consensus 48 ~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 48 LSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHhhHHHHHHHHHHhcccc
Confidence 344444344557999998873
No 6
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=9.27 E-value=1e+02 Score=17.90 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=12.8
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 023025 1 MNPARVTFMAATVCVMLTTHF 21 (288)
Q Consensus 1 ~~~~~~~~~~ag~~~~l~~~i 21 (288)
|.-|.=++.+|.+|+++..-+
T Consensus 1 MrkhLG~~wlai~c~LLfs~L 21 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHL 21 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHT
T ss_pred CcchhhhhHHHHHHHHHHhhH
Confidence 344555667777777765433
No 7
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=8.36 E-value=2e+02 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHhcCCCchhHHHHHHHHH
Q 023025 26 LSEHFLSWKKPKEQKAIIIIIL 47 (288)
Q Consensus 26 i~~Hl~~y~~P~~Qr~iiRIl~ 47 (288)
+...+..=..|.+||+++||+.
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 3445555578999999999974
No 8
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=7.54 E-value=4.8e+02 Score=22.84 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhHHHHHHHHHHhh
Q 023025 15 VMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (288)
Q Consensus 15 ~~l~~~is~~~i~~Hl~~y~~P~~Qr~iiRIl~mvPiyai~S~lsl~ 61 (288)
..+++.+-....+|-.. -.-|+..|..+.|..-+|-.+..+++++.
T Consensus 174 ~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~ 219 (314)
T 3m73_A 174 MIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSIN 219 (314)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHc
Confidence 33444443333444444 56678899999999999999999999985
No 9
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=6.01 E-value=4.8e+02 Score=18.47 Aligned_cols=23 Identities=4% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHH
Q 023025 21 FSTQLLSEHFLSWKKPKEQKAIII 44 (288)
Q Consensus 21 is~~~i~~Hl~~y~~P~~Qr~iiR 44 (288)
+.+-++..|+.| .-|..||..+.
T Consensus 35 MvLGN~vTnlln-~V~~~qR~~iA 57 (76)
T 2jr2_A 35 MCLGNAVTNIIA-QVPESKRVAVV 57 (76)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHH
Confidence 455677789999 99999998763
No 10
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.92 E-value=3.8e+02 Score=16.18 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcCCCchhHH
Q 023025 19 THFSTQLLSEHFLSWKKPKEQK 40 (288)
Q Consensus 19 ~~is~~~i~~Hl~~y~~P~~Qr 40 (288)
+.+-.|.+ -+..|.+-..||
T Consensus 17 iaIVVWti--v~ieYrk~~kQ~ 36 (36)
T 1pi7_A 17 IAIVVWSI--VIIEGRGGKKKK 36 (36)
T ss_pred HHHHHHHH--HHHHHHHHHhcC
Confidence 33444544 466666666664
Done!