Query 023025
Match_columns 288
No_of_seqs 117 out of 498
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 15:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 27.4 16 0.0012 22.3 2.1 12 72-83 38-49 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 22.8 22 0.0016 22.3 2.1 12 72-83 39-50 (57)
3 d1zoqc1 a.153.1.1 (C:2065-2111 13.2 62 0.0045 19.0 2.4 26 24-49 4-29 (47)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 12.1 1E+02 0.0076 15.8 3.4 17 181-197 9-25 (26)
5 d1v54m_ f.23.7.1 (M:) Mitochon 9.9 93 0.0067 18.3 2.4 20 16-35 23-42 (43)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 8.8 79 0.0058 17.9 1.7 18 83-100 11-28 (37)
7 d2otaa1 a.284.1.1 (A:7-68) Hyp 5.5 2.6E+02 0.019 17.4 3.2 23 21-44 29-51 (62)
8 d1xioa_ f.13.1.1 (A:) Sensory 5.2 5.9E+02 0.043 19.0 6.7 24 38-61 32-55 (226)
9 d2juza1 a.284.1.1 (A:1-72) Unc 5.1 2.4E+02 0.017 18.2 2.8 24 21-44 35-58 (72)
10 d1rkla_ f.23.30.1 (A:) Oligosa 4.8 2.9E+02 0.021 14.9 3.6 21 182-202 15-35 (36)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=27.41 E-value=16 Score=22.34 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 023025 72 FLESVKECYEAL 83 (288)
Q Consensus 72 y~~~ird~YeA~ 83 (288)
|++.+||+||-.
T Consensus 38 F~~avREVYe~v 49 (50)
T d1zl8a1 38 FFGAVREVYETV 49 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999999953
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.79 E-value=22 Score=22.31 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 023025 72 FLESVKECYEAL 83 (288)
Q Consensus 72 y~~~ird~YeA~ 83 (288)
|++.+||+||-.
T Consensus 39 F~~avREVYehv 50 (57)
T d1y74a1 39 FCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999964
No 3
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.25 E-value=62 Score=19.03 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHh
Q 023025 24 QLLSEHFLSWKKPKEQKAIIIIILMA 49 (288)
Q Consensus 24 ~~i~~Hl~~y~~P~~Qr~iiRIl~mv 49 (288)
-...+-+++=+.|++|.++.-|+=-=
T Consensus 4 q~Ll~tLrsP~sP~QQqQvL~ILksN 29 (47)
T d1zoqc1 4 QDLLRTLKSPSSPQQQQQVLNILKSN 29 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcC
Confidence 34567788888999999999887443
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.10 E-value=1e+02 Score=15.79 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHh
Q 023025 181 VSLALYSLVIFYHVFAK 197 (288)
Q Consensus 181 ~~~Aly~L~~Fy~~~k~ 197 (288)
..+++++++++|.++..
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46788899999987653
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.90 E-value=93 Score=18.26 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 023025 16 MLTTHFSTQLLSEHFLSWKK 35 (288)
Q Consensus 16 ~l~~~is~~~i~~Hl~~y~~ 35 (288)
.++++.-.--|..|+-+|.+
T Consensus 23 f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 23 FLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHccHHHHHHHHHHhcc
Confidence 34555544456679999864
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=8.84 E-value=79 Score=17.90 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCCcc
Q 023025 83 LVIAKFLALLYSYLNISI 100 (288)
Q Consensus 83 ~vly~Ff~Ll~~ylGg~~ 100 (288)
++...||..++-|+-.++
T Consensus 11 y~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455678889999987653
No 7
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=5.52 E-value=2.6e+02 Score=17.40 Aligned_cols=23 Identities=4% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHH
Q 023025 21 FSTQLLSEHFLSWKKPKEQKAIII 44 (288)
Q Consensus 21 is~~~i~~Hl~~y~~P~~Qr~iiR 44 (288)
+.+-++..|+.+ ..|..||..+-
T Consensus 29 MvLGN~vTnii~-~V~~~qR~~iA 51 (62)
T d2otaa1 29 MCLGNAVTNIIA-QVPESKRVAVV 51 (62)
T ss_dssp HHHHHHHHHHHT-TSCGGGHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHH
Confidence 344566678886 79999998763
No 8
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.23 E-value=5.9e+02 Score=18.99 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhh
Q 023025 38 EQKAIIIIILMAPIYAIDSYVGLI 61 (288)
Q Consensus 38 ~Qr~iiRIl~mvPiyai~S~lsl~ 61 (288)
..|...-+..+++..|..++..+.
T Consensus 32 ~~r~~~~~~~~I~~iA~~~Y~~ma 55 (226)
T d1xioa_ 32 VPQYEYLVAMFIPIWSGLAYMAMA 55 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 335555567788888877777765
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=5.14 E-value=2.4e+02 Score=18.19 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHH
Q 023025 21 FSTQLLSEHFLSWKKPKEQKAIII 44 (288)
Q Consensus 21 is~~~i~~Hl~~y~~P~~Qr~iiR 44 (288)
+.+-++..|+.|-.-|..||..+.
T Consensus 35 MvLGN~vTniln~~V~~~qR~~iA 58 (72)
T d2juza1 35 IALGNMASNLLTTSVPQTQCEALA 58 (72)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 445677789999999999998763
No 10
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.82 E-value=2.9e+02 Score=14.94 Aligned_cols=21 Identities=19% Similarity=0.705 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHhhcCCC
Q 023025 182 SLALYSLVIFYHVFAKELAPH 202 (288)
Q Consensus 182 ~~Aly~L~~Fy~~~k~~L~~~ 202 (288)
.+.+..|...|++..+...|.
T Consensus 15 gi~mmtliviyh~~~st~s~k 35 (36)
T d1rkla_ 15 GIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHHHHhhhccccCCC
Confidence 456778899999998877764
Done!