Query 023026
Match_columns 288
No_of_seqs 292 out of 1629
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 1.4E-19 3.1E-24 136.9 8.7 77 134-211 1-77 (77)
2 PRK11752 putative S-transferas 99.8 4E-18 8.6E-23 156.9 13.1 122 100-233 18-149 (264)
3 PRK09481 sspA stringent starva 99.8 1.2E-17 2.5E-22 147.4 13.0 96 134-233 10-105 (211)
4 PRK15113 glutathione S-transfe 99.7 1.8E-17 3.9E-22 146.6 13.1 99 133-234 4-109 (214)
5 PF13417 GST_N_3: Glutathione 99.7 3.3E-17 7.2E-22 123.2 8.7 74 137-214 1-74 (75)
6 COG0625 Gst Glutathione S-tran 99.7 1.8E-16 4E-21 139.2 11.1 98 135-234 1-102 (211)
7 cd03045 GST_N_Delta_Epsilon GS 99.7 1.4E-16 3E-21 117.9 8.6 72 135-209 1-74 (74)
8 cd03059 GST_N_SspA GST_N famil 99.7 1.7E-16 3.8E-21 116.8 9.0 73 135-211 1-73 (73)
9 PRK13972 GSH-dependent disulfi 99.7 3.5E-16 7.7E-21 137.9 12.3 97 134-234 1-104 (215)
10 cd03048 GST_N_Ure2p_like GST_N 99.7 3E-16 6.5E-21 118.8 9.6 78 134-213 1-81 (81)
11 PLN02473 glutathione S-transfe 99.7 4.7E-16 1E-20 136.4 11.9 98 134-234 2-103 (214)
12 cd03052 GST_N_GDAP1 GST_N fami 99.7 3.2E-16 7E-21 118.2 8.2 71 135-208 1-73 (73)
13 cd03058 GST_N_Tau GST_N family 99.6 1.1E-15 2.4E-20 113.9 9.2 73 135-211 1-74 (74)
14 PRK10387 glutaredoxin 2; Provi 99.6 2.1E-15 4.6E-20 131.4 11.5 92 135-233 1-92 (210)
15 cd03051 GST_N_GTT2_like GST_N 99.6 1.2E-15 2.6E-20 111.7 8.2 72 135-208 1-74 (74)
16 cd03037 GST_N_GRX2 GST_N famil 99.6 1.2E-15 2.7E-20 112.7 8.3 71 135-209 1-71 (71)
17 cd03053 GST_N_Phi GST_N family 99.6 1.6E-15 3.4E-20 113.0 8.9 73 135-210 2-76 (76)
18 KOG0868 Glutathione S-transfer 99.6 9.2E-16 2E-20 135.8 8.6 99 133-233 4-104 (217)
19 cd03060 GST_N_Omega_like GST_N 99.6 1.7E-15 3.6E-20 112.4 8.7 69 136-207 2-70 (71)
20 cd03056 GST_N_4 GST_N family, 99.6 1.7E-15 3.7E-20 111.1 8.4 71 135-208 1-73 (73)
21 cd03050 GST_N_Theta GST_N fami 99.6 2.5E-15 5.5E-20 112.4 9.0 74 135-211 1-76 (76)
22 cd03040 GST_N_mPGES2 GST_N fam 99.6 3.2E-15 7E-20 112.0 9.3 75 134-212 1-77 (77)
23 KOG0406 Glutathione S-transfer 99.6 6.5E-15 1.4E-19 134.8 12.6 99 133-235 8-108 (231)
24 TIGR01262 maiA maleylacetoacet 99.6 5.9E-15 1.3E-19 128.6 10.4 96 136-234 1-99 (210)
25 PRK10357 putative glutathione 99.6 7.5E-15 1.6E-19 127.7 10.9 95 135-232 1-95 (202)
26 PLN02395 glutathione S-transfe 99.6 1.4E-14 2.9E-19 127.0 12.3 96 134-233 2-101 (215)
27 cd03047 GST_N_2 GST_N family, 99.6 5.3E-15 1.1E-19 110.1 8.3 71 135-208 1-73 (73)
28 cd03044 GST_N_EF1Bgamma GST_N 99.6 5.7E-15 1.2E-19 110.8 8.4 72 136-209 2-74 (75)
29 cd03061 GST_N_CLIC GST_N famil 99.6 6E-15 1.3E-19 117.5 8.9 70 141-214 20-89 (91)
30 cd03039 GST_N_Sigma_like GST_N 99.6 3.6E-15 7.9E-20 110.5 6.5 72 135-209 1-72 (72)
31 cd03055 GST_N_Omega GST_N fami 99.6 1.3E-14 2.7E-19 113.0 9.8 76 130-208 14-89 (89)
32 cd03057 GST_N_Beta GST_N famil 99.6 9.8E-15 2.1E-19 109.3 8.9 75 135-212 1-77 (77)
33 cd03080 GST_N_Metaxin_like GST 99.6 9.7E-15 2.1E-19 109.7 8.8 68 134-212 1-75 (75)
34 TIGR02182 GRXB Glutaredoxin, G 99.6 1.4E-14 3.1E-19 128.4 11.3 89 136-232 1-90 (209)
35 PRK10542 glutathionine S-trans 99.6 1.3E-14 2.8E-19 125.7 10.6 97 135-234 1-101 (201)
36 cd03076 GST_N_Pi GST_N family, 99.6 5.8E-15 1.3E-19 110.6 7.2 73 134-210 1-73 (73)
37 KOG0867 Glutathione S-transfer 99.6 2.2E-14 4.9E-19 129.7 11.5 100 134-236 2-105 (226)
38 cd03046 GST_N_GTT1_like GST_N 99.6 1.7E-14 3.7E-19 106.9 8.6 74 135-212 1-76 (76)
39 cd03049 GST_N_3 GST_N family, 99.5 1.8E-14 3.8E-19 106.9 7.8 71 135-208 1-73 (73)
40 PF13409 GST_N_2: Glutathione 99.5 1.2E-14 2.6E-19 108.5 6.7 67 142-210 1-70 (70)
41 cd03038 GST_N_etherase_LigE GS 99.5 2.5E-14 5.5E-19 109.3 7.6 70 141-212 14-84 (84)
42 cd00570 GST_N_family Glutathio 99.5 4.8E-14 1E-18 99.5 8.3 71 135-208 1-71 (71)
43 cd03042 GST_N_Zeta GST_N famil 99.5 3.4E-14 7.3E-19 104.4 7.7 71 135-208 1-73 (73)
44 PLN02378 glutathione S-transfe 99.5 1E-13 2.3E-18 123.0 11.3 88 139-232 16-103 (213)
45 cd03077 GST_N_Alpha GST_N fami 99.5 1.7E-13 3.7E-18 104.5 6.9 71 135-212 2-77 (79)
46 cd03075 GST_N_Mu GST_N family, 99.5 2.4E-13 5.3E-18 104.6 7.8 74 136-211 2-82 (82)
47 TIGR00862 O-ClC intracellular 99.4 8.5E-13 1.8E-17 121.1 11.7 71 140-214 16-86 (236)
48 cd03054 GST_N_Metaxin GST_N fa 99.4 5.1E-13 1.1E-17 99.1 8.4 65 135-210 1-72 (72)
49 PLN02817 glutathione dehydroge 99.4 6.6E-13 1.4E-17 123.3 10.5 87 141-233 71-157 (265)
50 cd03043 GST_N_1 GST_N family, 99.4 1.1E-12 2.3E-17 98.6 8.0 66 140-208 7-73 (73)
51 PF02798 GST_N: Glutathione S- 99.4 2.9E-12 6.3E-17 97.0 8.8 71 135-209 3-76 (76)
52 PTZ00057 glutathione s-transfe 99.4 4.1E-12 9E-17 111.8 10.7 75 134-213 4-85 (205)
53 TIGR02190 GlrX-dom Glutaredoxi 99.3 2.9E-11 6.2E-16 92.2 9.3 75 130-208 5-79 (79)
54 COG2999 GrxB Glutaredoxin 2 [P 99.2 2.5E-11 5.5E-16 107.7 7.4 92 135-233 1-92 (215)
55 cd03029 GRX_hybridPRX5 Glutare 99.2 7.6E-11 1.6E-15 87.7 8.9 71 134-208 2-72 (72)
56 PRK10638 glutaredoxin 3; Provi 99.1 5.2E-10 1.1E-14 85.8 8.7 72 134-208 3-74 (83)
57 cd03079 GST_N_Metaxin2 GST_N f 99.0 5.3E-10 1.1E-14 86.0 6.9 65 134-210 10-74 (74)
58 cd02066 GRX_family Glutaredoxi 99.0 1.7E-09 3.7E-14 77.4 8.3 70 134-206 1-70 (72)
59 KOG4420 Uncharacterized conser 99.0 4.5E-10 9.9E-15 104.7 5.7 82 130-214 22-105 (325)
60 cd03027 GRX_DEP Glutaredoxin ( 99.0 1.6E-09 3.5E-14 80.8 7.6 69 134-205 2-70 (73)
61 TIGR02196 GlrX_YruB Glutaredox 99.0 2.3E-09 5.1E-14 77.3 7.7 71 134-207 1-73 (74)
62 cd03418 GRX_GRXb_1_3_like Glut 98.9 5E-09 1.1E-13 77.6 8.0 72 134-208 1-73 (75)
63 TIGR02200 GlrX_actino Glutared 98.9 7.6E-09 1.6E-13 76.2 8.5 73 134-208 1-76 (77)
64 KOG3029 Glutathione S-transfer 98.9 8.1E-09 1.7E-13 97.4 10.7 69 134-208 90-158 (370)
65 COG0695 GrxC Glutaredoxin and 98.9 8.2E-09 1.8E-13 79.8 8.0 73 134-208 2-75 (80)
66 PRK11200 grxA glutaredoxin 1; 98.9 1.5E-08 3.3E-13 77.8 9.2 76 134-212 2-84 (85)
67 TIGR02183 GRXA Glutaredoxin, G 98.9 1.4E-08 3E-13 78.9 8.9 75 135-212 2-83 (86)
68 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.7E-08 3.7E-13 72.7 7.2 63 134-199 1-63 (73)
69 PHA03050 glutaredoxin; Provisi 98.8 3.3E-08 7.2E-13 80.7 8.5 72 132-205 12-88 (108)
70 cd03419 GRX_GRXh_1_2_like Glut 98.8 3.9E-08 8.5E-13 73.7 8.2 74 134-209 1-76 (82)
71 TIGR02181 GRX_bact Glutaredoxi 98.7 4.4E-08 9.6E-13 73.7 7.8 72 135-209 1-72 (79)
72 TIGR02189 GlrX-like_plant Glut 98.7 7.1E-08 1.5E-12 77.2 9.2 74 131-206 6-81 (99)
73 PRK10329 glutaredoxin-like pro 98.7 6.5E-08 1.4E-12 74.9 8.6 70 134-207 2-73 (81)
74 PF00462 Glutaredoxin: Glutare 98.7 2.9E-08 6.2E-13 71.4 5.3 59 135-196 1-59 (60)
75 TIGR00365 monothiol glutaredox 98.7 9.1E-08 2E-12 76.4 8.6 74 131-207 10-88 (97)
76 TIGR02194 GlrX_NrdH Glutaredox 98.7 5.1E-08 1.1E-12 72.8 6.4 54 135-190 1-54 (72)
77 cd03028 GRX_PICOT_like Glutare 98.6 1.6E-07 3.5E-12 73.5 8.5 74 131-207 6-84 (90)
78 PLN02907 glutamate-tRNA ligase 98.6 1.7E-07 3.6E-12 98.4 10.9 84 135-234 3-86 (722)
79 cd03078 GST_N_Metaxin1_like GS 98.6 1.8E-07 3.8E-12 71.1 8.2 58 142-210 15-72 (73)
80 TIGR02180 GRX_euk Glutaredoxin 98.6 2.2E-07 4.8E-12 69.6 8.6 73 135-209 1-77 (84)
81 KOG1695 Glutathione S-transfer 98.5 6.8E-07 1.5E-11 81.0 10.7 91 134-231 3-93 (206)
82 KOG1422 Intracellular Cl- chan 98.4 9.9E-07 2.1E-11 80.2 9.4 73 142-218 20-92 (221)
83 PRK10824 glutaredoxin-4; Provi 98.2 5.3E-06 1.1E-10 68.9 8.3 74 131-207 13-91 (115)
84 KOG4244 Failed axon connection 98.1 1E-05 2.2E-10 75.9 9.0 89 133-232 44-140 (281)
85 PTZ00062 glutaredoxin; Provisi 97.9 4.3E-05 9.3E-10 69.2 8.7 74 130-206 110-188 (204)
86 PRK12759 bifunctional gluaredo 97.9 3.8E-05 8.2E-10 75.8 8.8 70 133-205 2-79 (410)
87 KOG1752 Glutaredoxin and relat 97.9 0.0001 2.2E-09 60.3 9.3 76 130-207 11-88 (104)
88 cd03031 GRX_GRX_like Glutaredo 97.8 0.00011 2.4E-09 63.4 8.4 70 134-206 1-80 (147)
89 cd03036 ArsC_like Arsenate Red 97.7 4.6E-05 9.9E-10 62.1 4.8 45 135-180 1-45 (111)
90 PRK01655 spxA transcriptional 97.6 0.00015 3.1E-09 61.0 5.8 36 134-169 1-36 (131)
91 cd02973 TRX_GRX_like Thioredox 97.5 0.00027 5.9E-09 51.1 6.3 59 134-199 2-65 (67)
92 cd03032 ArsC_Spx Arsenate Redu 97.5 0.00021 4.5E-09 58.4 6.1 36 134-169 1-36 (115)
93 cd02977 ArsC_family Arsenate R 97.5 0.00022 4.7E-09 56.9 5.3 45 135-180 1-45 (105)
94 PRK12559 transcriptional regul 97.3 0.00066 1.4E-08 57.2 6.2 37 134-170 1-37 (131)
95 PRK13344 spxA transcriptional 97.2 0.00076 1.6E-08 56.9 6.3 37 134-170 1-37 (132)
96 TIGR01617 arsC_related transcr 97.2 0.00053 1.1E-08 56.1 4.9 35 135-169 1-35 (117)
97 COG4545 Glutaredoxin-related p 97.0 0.0021 4.5E-08 50.3 5.7 62 136-198 5-77 (85)
98 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0023 4.9E-08 51.9 5.9 36 135-170 1-36 (105)
99 PF10568 Tom37: Outer mitochon 96.9 0.0055 1.2E-07 46.8 7.6 57 142-208 13-72 (72)
100 cd03033 ArsC_15kD Arsenate Red 96.6 0.0036 7.8E-08 51.6 5.2 44 134-178 1-44 (113)
101 COG1393 ArsC Arsenate reductas 96.6 0.0059 1.3E-07 50.8 6.1 45 133-178 1-45 (117)
102 TIGR01616 nitro_assoc nitrogen 96.4 0.0095 2.1E-07 50.1 6.2 43 134-177 2-44 (126)
103 PRK10853 putative reductase; P 96.3 0.0061 1.3E-07 50.5 4.8 37 134-170 1-37 (118)
104 TIGR00412 redox_disulf_2 small 96.3 0.018 4E-07 43.4 7.0 56 134-198 2-61 (76)
105 cd01659 TRX_superfamily Thiore 96.1 0.019 4.2E-07 37.5 5.4 55 135-191 1-60 (69)
106 PRK10026 arsenate reductase; P 96.0 0.012 2.6E-07 50.6 5.3 38 133-170 2-39 (141)
107 cd03030 GRX_SH3BGR Glutaredoxi 95.8 0.063 1.4E-06 42.8 8.1 69 135-206 2-80 (92)
108 cd03034 ArsC_ArsC Arsenate Red 95.7 0.021 4.7E-07 46.5 5.4 36 135-170 1-36 (112)
109 TIGR00014 arsC arsenate reduct 95.6 0.025 5.5E-07 46.3 5.4 36 135-170 1-36 (114)
110 TIGR00411 redox_disulf_1 small 95.6 0.11 2.4E-06 38.3 8.2 54 134-190 2-59 (82)
111 PF05768 DUF836: Glutaredoxin- 95.2 0.1 2.2E-06 39.9 7.3 51 134-190 1-55 (81)
112 COG0278 Glutaredoxin-related p 94.9 0.12 2.6E-06 42.5 7.0 73 130-205 12-90 (105)
113 PHA02125 thioredoxin-like prot 94.7 0.13 2.7E-06 38.5 6.3 52 134-190 1-52 (75)
114 cd03026 AhpF_NTD_C TRX-GRX-lik 94.5 0.12 2.6E-06 40.5 6.1 58 134-198 15-77 (89)
115 PF11287 DUF3088: Protein of u 93.9 0.25 5.4E-06 41.2 7.0 69 142-213 23-109 (112)
116 PF03960 ArsC: ArsC family; I 93.4 0.18 3.9E-06 40.6 5.3 32 138-169 1-32 (110)
117 PF13192 Thioredoxin_3: Thiore 93.1 0.77 1.7E-05 34.5 8.0 58 134-200 2-63 (76)
118 TIGR01295 PedC_BrcD bacterioci 90.3 1.7 3.7E-05 35.8 7.8 63 133-195 25-101 (122)
119 KOG0911 Glutaredoxin-related p 89.7 1.1 2.5E-05 41.5 6.9 73 131-207 137-214 (227)
120 KOG2903 Predicted glutathione 89.5 1.6 3.4E-05 41.8 7.7 79 133-211 36-151 (319)
121 PF00085 Thioredoxin: Thioredo 88.2 6 0.00013 29.6 9.1 74 134-210 20-103 (103)
122 cd02947 TRX_family TRX family; 88.1 2.2 4.7E-05 30.6 6.2 51 134-189 13-68 (93)
123 cd02975 PfPDO_like_N Pyrococcu 87.5 0.56 1.2E-05 37.9 3.0 52 134-190 24-81 (113)
124 COG0435 ECM4 Predicted glutath 87.4 3.2 6.8E-05 40.1 8.3 81 132-212 49-158 (324)
125 cd02949 TRX_NTR TRX domain, no 84.5 5.3 0.00012 30.7 7.1 58 134-196 16-79 (97)
126 KOG3027 Mitochondrial outer me 84.5 2.3 5.1E-05 39.5 5.7 64 134-210 28-91 (257)
127 PF09635 MetRS-N: MetRS-N bind 83.2 0.59 1.3E-05 39.6 1.3 34 180-213 31-64 (122)
128 TIGR03140 AhpF alkyl hydropero 83.1 2.6 5.6E-05 42.6 6.0 70 134-210 120-198 (515)
129 TIGR02187 GlrX_arch Glutaredox 82.8 2.3 5.1E-05 37.9 5.1 57 134-195 136-197 (215)
130 PF04908 SH3BGR: SH3-binding, 82.6 5.7 0.00012 32.2 6.7 63 134-199 2-79 (99)
131 cd02951 SoxW SoxW family; SoxW 82.1 6.9 0.00015 31.3 7.1 20 133-152 16-35 (125)
132 PRK15317 alkyl hydroperoxide r 82.0 3.3 7.1E-05 41.8 6.3 73 133-212 118-199 (517)
133 KOG3028 Translocase of outer m 81.4 18 0.00039 35.2 10.7 58 142-209 16-73 (313)
134 cd02959 ERp19 Endoplasmic reti 81.2 5 0.00011 32.7 6.0 59 134-196 22-89 (117)
135 TIGR03143 AhpF_homolog putativ 81.1 3.7 8.1E-05 42.0 6.4 59 134-199 479-542 (555)
136 cd02953 DsbDgamma DsbD gamma f 80.5 3.4 7.5E-05 31.9 4.7 55 134-189 14-77 (104)
137 TIGR01068 thioredoxin thioredo 77.1 19 0.00041 26.7 7.7 50 135-189 18-73 (101)
138 cd02989 Phd_like_TxnDC9 Phosdu 77.0 2.9 6.2E-05 33.8 3.3 60 134-198 25-89 (113)
139 PTZ00051 thioredoxin; Provisio 76.5 14 0.00031 27.8 7.0 57 134-195 21-82 (98)
140 cd02955 SSP411 TRX domain, SSP 75.4 11 0.00024 31.4 6.5 65 135-200 19-97 (124)
141 PHA02278 thioredoxin-like prot 75.4 15 0.00033 29.4 7.1 62 135-197 18-85 (103)
142 PRK10877 protein disulfide iso 74.7 6.6 0.00014 36.0 5.5 38 130-167 106-146 (232)
143 PRK09381 trxA thioredoxin; Pro 74.4 28 0.00062 26.9 8.4 57 135-196 25-87 (109)
144 PRK13728 conjugal transfer pro 73.1 38 0.00082 30.4 9.7 32 135-166 73-108 (181)
145 cd02993 PDI_a_APS_reductase PD 72.6 15 0.00033 28.9 6.4 54 133-189 23-83 (109)
146 cd03020 DsbA_DsbC_DsbG DsbA fa 72.3 8.6 0.00019 33.6 5.4 37 131-167 77-115 (197)
147 PRK11657 dsbG disulfide isomer 71.6 10 0.00022 35.2 5.9 36 131-166 117-156 (251)
148 cd02996 PDI_a_ERp44 PDIa famil 71.4 23 0.00049 27.6 7.1 50 135-189 22-83 (108)
149 TIGR02187 GlrX_arch Glutaredox 70.8 16 0.00035 32.5 6.9 76 133-211 21-111 (215)
150 PF13098 Thioredoxin_2: Thiore 70.6 5.4 0.00012 31.0 3.4 24 132-155 6-29 (112)
151 cd02997 PDI_a_PDIR PDIa family 70.1 24 0.00053 26.5 6.9 60 133-195 19-86 (104)
152 cd02950 TxlA TRX-like protein 69.9 52 0.0011 27.5 9.5 74 135-212 24-111 (142)
153 cd02984 TRX_PICOT TRX domain, 69.3 6.8 0.00015 29.5 3.6 59 135-196 18-80 (97)
154 cd02963 TRX_DnaJ TRX domain, D 68.2 36 0.00078 26.9 7.8 57 134-195 27-90 (111)
155 cd03008 TryX_like_RdCVF Trypar 67.4 27 0.00057 30.1 7.3 23 133-155 26-49 (146)
156 cd02972 DsbA_family DsbA famil 66.4 8.6 0.00019 27.9 3.6 34 135-168 1-40 (98)
157 cd02952 TRP14_like Human TRX-r 65.3 29 0.00064 28.8 6.9 59 141-200 38-106 (119)
158 PHA03075 glutaredoxin-like pro 64.0 8.8 0.00019 32.5 3.5 34 133-166 3-36 (123)
159 PRK10996 thioredoxin 2; Provis 63.9 59 0.0013 27.0 8.6 59 134-195 55-117 (139)
160 TIGR02738 TrbB type-F conjugat 63.9 78 0.0017 27.2 9.5 33 135-167 54-90 (153)
161 KOG2501 Thioredoxin, nucleored 63.8 21 0.00046 31.5 6.0 37 133-169 34-78 (157)
162 COG3011 Predicted thiol-disulf 62.5 56 0.0012 28.3 8.2 75 133-210 9-86 (137)
163 PF04134 DUF393: Protein of un 62.4 31 0.00068 27.2 6.4 66 139-209 3-76 (114)
164 TIGR01126 pdi_dom protein disu 62.0 7.7 0.00017 29.0 2.7 50 134-188 16-73 (102)
165 PF08534 Redoxin: Redoxin; In 62.0 19 0.00041 29.3 5.2 47 142-191 40-93 (146)
166 cd02985 TRX_CDSP32 TRX family, 61.8 39 0.00084 26.3 6.7 60 135-196 19-83 (103)
167 PRK03147 thiol-disulfide oxido 61.2 63 0.0014 26.8 8.4 19 135-153 65-83 (173)
168 cd03004 PDI_a_ERdj5_C PDIa fam 59.7 38 0.00082 25.9 6.3 51 134-189 22-78 (104)
169 cd02954 DIM1 Dim1 family; Dim1 59.6 18 0.00039 30.0 4.6 52 135-189 18-73 (114)
170 PF13728 TraF: F plasmid trans 59.3 51 0.0011 29.9 7.9 60 134-194 123-195 (215)
171 cd03023 DsbA_Com1_like DsbA fa 59.1 14 0.00029 29.8 3.8 35 133-167 7-46 (154)
172 cd03009 TryX_like_TryX_NRX Try 58.3 32 0.0007 27.5 5.9 18 137-154 24-41 (131)
173 cd02957 Phd_like Phosducin (Ph 57.7 36 0.00078 26.9 6.0 57 135-197 28-89 (113)
174 cd03003 PDI_a_ERdj5_N PDIa fam 57.6 31 0.00067 26.4 5.4 51 134-189 21-77 (101)
175 cd03002 PDI_a_MPD1_like PDI fa 56.2 51 0.0011 25.1 6.5 53 134-189 21-79 (109)
176 cd02961 PDI_a_family Protein D 56.1 16 0.00034 26.7 3.5 54 133-189 17-76 (101)
177 TIGR02740 TraF-like TraF-like 54.4 54 0.0012 30.8 7.5 59 135-194 170-241 (271)
178 KOG2824 Glutaredoxin-related p 54.4 38 0.00083 32.5 6.4 75 129-206 127-211 (281)
179 cd02994 PDI_a_TMX PDIa family, 54.3 42 0.00091 25.5 5.7 51 134-189 19-76 (101)
180 cd02948 TRX_NDPK TRX domain, T 53.9 26 0.00056 27.2 4.5 57 135-195 21-82 (102)
181 cd03005 PDI_a_ERp46 PDIa famil 52.7 36 0.00079 25.5 5.1 51 134-189 19-78 (102)
182 cd03000 PDI_a_TMX3 PDIa family 52.3 10 0.00022 29.4 1.9 52 134-190 18-78 (104)
183 TIGR02661 MauD methylamine deh 52.1 68 0.0015 28.0 7.3 30 135-164 78-111 (189)
184 cd03006 PDI_a_EFP1_N PDIa fami 51.7 49 0.0011 26.9 5.9 52 134-189 32-89 (113)
185 PRK00293 dipZ thiol:disulfide 51.4 89 0.0019 32.5 9.1 54 135-189 478-539 (571)
186 PF01323 DSBA: DSBA-like thior 49.8 29 0.00063 29.3 4.5 34 135-168 2-40 (193)
187 KOG3425 Uncharacterized conser 49.1 36 0.00078 29.1 4.8 68 141-210 43-122 (128)
188 cd02970 PRX_like2 Peroxiredoxi 48.4 51 0.0011 26.4 5.6 56 133-191 24-88 (149)
189 cd02966 TlpA_like_family TlpA- 48.0 40 0.00087 24.8 4.6 23 134-156 22-44 (116)
190 cd02995 PDI_a_PDI_a'_C PDIa fa 47.6 19 0.00042 27.0 2.8 23 134-156 21-43 (104)
191 PTZ00443 Thioredoxin domain-co 47.4 54 0.0012 30.1 6.1 77 134-213 55-141 (224)
192 cd03001 PDI_a_P5 PDIa family, 47.3 81 0.0018 23.6 6.3 51 134-189 21-77 (103)
193 cd02956 ybbN ybbN protein fami 46.6 47 0.001 24.9 4.8 58 135-195 16-77 (96)
194 PLN02309 5'-adenylylsulfate re 46.0 1.3E+02 0.0027 30.9 9.0 54 134-190 368-428 (457)
195 PF00578 AhpC-TSA: AhpC/TSA fa 45.8 31 0.00068 26.8 3.8 56 133-191 26-90 (124)
196 PRK15412 thiol:disulfide inter 45.7 57 0.0012 28.3 5.8 52 138-191 75-130 (185)
197 cd02998 PDI_a_ERp38 PDIa famil 45.5 27 0.00058 26.2 3.3 54 134-189 21-80 (105)
198 PF13462 Thioredoxin_4: Thiore 45.4 24 0.00052 28.9 3.2 37 132-168 13-57 (162)
199 cd02999 PDI_a_ERp44_like PDIa 45.3 18 0.00039 28.3 2.4 52 134-189 21-77 (100)
200 cd03019 DsbA_DsbA DsbA family, 45.2 29 0.00064 28.9 3.8 35 133-167 17-57 (178)
201 cd02962 TMX2 TMX2 family; comp 41.4 46 0.001 28.7 4.5 60 135-198 51-122 (152)
202 TIGR00385 dsbE periplasmic pro 41.3 81 0.0018 26.9 6.0 30 136-165 68-100 (173)
203 cd02958 UAS UAS family; UAS is 40.5 1.1E+02 0.0024 24.1 6.3 62 133-195 18-89 (114)
204 PF14595 Thioredoxin_9: Thiore 39.8 9.1 0.0002 32.1 -0.1 55 134-190 44-103 (129)
205 COG2143 Thioredoxin-related pr 39.7 1.8E+02 0.004 26.2 7.9 80 131-211 42-152 (182)
206 cd03022 DsbA_HCCA_Iso DsbA fam 39.4 43 0.00094 28.3 4.0 32 135-166 1-36 (192)
207 KOG0907 Thioredoxin [Posttrans 39.3 85 0.0019 25.4 5.5 62 130-196 19-86 (106)
208 TIGR02739 TraF type-F conjugat 39.0 1.5E+02 0.0033 28.0 7.8 60 134-194 153-225 (256)
209 cd03024 DsbA_FrnE DsbA family, 38.8 39 0.00085 28.9 3.7 32 135-166 1-40 (201)
210 cd02967 mauD Methylamine utili 38.1 48 0.001 25.5 3.8 52 138-190 28-84 (114)
211 TIGR01130 ER_PDI_fam protein d 37.8 1.9E+02 0.0041 27.8 8.6 74 134-212 21-110 (462)
212 TIGR00424 APS_reduc 5'-adenyly 36.3 1.9E+02 0.0041 29.6 8.6 52 135-189 375-433 (463)
213 PF06110 DUF953: Eukaryotic pr 36.1 95 0.0021 26.0 5.4 62 141-202 36-107 (119)
214 cd02987 Phd_like_Phd Phosducin 35.8 42 0.00092 29.3 3.4 57 137-197 89-148 (175)
215 cd02964 TryX_like_family Trypa 35.6 53 0.0012 26.5 3.8 18 137-154 23-40 (132)
216 cd03021 DsbA_GSTK DsbA family, 35.6 61 0.0013 28.6 4.4 33 134-166 2-38 (209)
217 smart00594 UAS UAS domain. 34.7 1.8E+02 0.0039 23.4 6.8 61 134-195 30-99 (122)
218 cd05295 MDH_like Malate dehydr 34.6 79 0.0017 32.3 5.5 74 142-215 3-89 (452)
219 cd03010 TlpA_like_DsbE TlpA-li 33.7 1.3E+02 0.0027 23.8 5.6 22 135-156 29-50 (127)
220 cd02971 PRX_family Peroxiredox 32.9 1.1E+02 0.0023 24.4 5.1 58 132-191 22-88 (140)
221 cd03011 TlpA_like_ScsD_MtbDsbE 32.5 1E+02 0.0022 24.0 4.9 56 134-191 23-81 (123)
222 cd02992 PDI_a_QSOX PDIa family 32.3 1E+02 0.0022 24.6 4.9 52 135-189 23-83 (114)
223 PTZ00102 disulphide isomerase; 32.1 2.8E+02 0.0061 27.1 8.9 76 133-213 51-140 (477)
224 PTZ00056 glutathione peroxidas 30.5 1.1E+02 0.0025 27.1 5.3 71 137-211 45-129 (199)
225 cd02965 HyaE HyaE family; HyaE 30.4 80 0.0017 26.1 4.0 64 131-199 27-98 (111)
226 COG3019 Predicted metal-bindin 27.9 1E+02 0.0022 27.1 4.3 34 133-166 26-59 (149)
227 cd04911 ACT_AKiii-YclM-BS_1 AC 26.8 77 0.0017 24.6 3.1 23 144-166 16-38 (76)
228 cd02982 PDI_b'_family Protein 26.8 97 0.0021 23.3 3.7 53 134-189 15-73 (103)
229 TIGR01626 ytfJ_HI0045 conserve 26.8 1.3E+02 0.0027 27.0 4.9 56 136-191 64-133 (184)
230 PRK09437 bcp thioredoxin-depen 26.6 1.8E+02 0.0038 23.9 5.5 56 133-191 31-95 (154)
231 cd05564 PTS_IIB_chitobiose_lic 26.4 1.2E+02 0.0026 23.8 4.3 24 143-166 13-36 (96)
232 PRK13703 conjugal pilus assemb 25.7 1.5E+02 0.0033 27.8 5.5 61 133-194 145-218 (248)
233 cd03065 PDI_b_Calsequestrin_N 24.9 3.7E+02 0.008 22.2 7.1 71 134-209 29-117 (120)
234 PF00731 AIRC: AIR carboxylase 24.4 1.3E+02 0.0029 26.1 4.5 30 143-174 13-42 (150)
235 KOG0910 Thioredoxin-like prote 24.1 95 0.0021 27.3 3.5 61 134-197 64-128 (150)
236 cd02969 PRX_like1 Peroxiredoxi 24.0 1.6E+02 0.0035 24.7 4.9 22 135-156 29-50 (171)
237 PTZ00062 glutaredoxin; Provisi 23.2 3.9E+02 0.0085 24.2 7.5 88 135-241 20-116 (204)
238 PF09413 DUF2007: Domain of un 23.1 91 0.002 22.4 2.8 32 135-166 1-32 (67)
239 cd03025 DsbA_FrnE_like DsbA fa 23.0 88 0.0019 26.5 3.1 32 134-165 2-39 (193)
240 COG0041 PurE Phosphoribosylcar 22.9 1.5E+02 0.0032 26.5 4.4 32 144-177 16-47 (162)
241 PF09868 DUF2095: Uncharacteri 22.8 27 0.00058 29.7 -0.1 66 145-210 24-90 (128)
242 TIGR01162 purE phosphoribosyla 22.8 1.5E+02 0.0033 26.1 4.6 30 143-174 11-40 (156)
243 TIGR00216 ispH_lytB (E)-4-hydr 22.7 3E+02 0.0066 26.3 6.9 80 133-215 87-184 (280)
244 COG0526 TrxA Thiol-disulfide i 22.0 78 0.0017 22.5 2.3 17 140-156 41-57 (127)
245 cd03017 PRX_BCP Peroxiredoxin 22.0 2.1E+02 0.0045 22.7 5.0 55 133-191 24-88 (140)
246 PTZ00256 glutathione peroxidas 20.3 2.4E+02 0.0053 24.3 5.4 72 136-212 46-133 (183)
247 cd02988 Phd_like_VIAF Phosduci 20.3 2.3E+02 0.005 25.2 5.3 54 136-197 107-165 (192)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=1.4e-19 Score=136.90 Aligned_cols=77 Identities=58% Similarity=1.113 Sum_probs=68.1
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
|++||+++.||+|++|+++|+++||+|+.+++..+....+++ .++||.++||+|+|.++|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~-~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKF-LEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHH-HHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 589999999999999999999999999999998664444565 47999999999998656799999999999999986
No 2
>PRK11752 putative S-transferase; Provisional
Probab=99.77 E-value=4e-18 Score=156.94 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=100.9
Q ss_pred hhhhhhhcccccCCcccccCCCCccccCCCCCCCceEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCC--CCcC
Q 023026 100 ATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK--GSIR 171 (288)
Q Consensus 100 ~~~~las~~R~~~G~~~~~~~~~~~~~~~~~p~~~LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~k--g~~~ 171 (288)
.++.+|.+.|+..|+++. +..+..+++|+||+.. ||+|++|+++|+|+ |++|+.+.|+. +++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~ 88 (264)
T PRK11752 18 NGGAFANINRPVAGATHE--------KTLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQF 88 (264)
T ss_pred CCCcccccCCCCCCcchh--------cccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccccc
Confidence 578999999999999887 3455677899999975 99999999999997 89999987753 4455
Q ss_pred CHHHHHHhCCCCcccEEEeCCC--CeeecChHHHHHHHHHHhCCCCCCCCChHHHHHHHhHhHH
Q 023026 172 HREMVRRLGGKEQFPFLIDPNT--GVSMYESGDIVNYLFQQYGKGRSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 172 ~~efLk~lnP~~qVPvLvDpn~--G~~L~ES~aIl~YL~e~Y~~~~~p~~~~~era~v~~Wl~t 233 (288)
.++++ ++||.++||+|+|.++ |+.|+||.+|++||+++|+. ..|.+..+++.+.+|+..
T Consensus 89 ~~e~~-~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~--L~P~~~~era~v~~wl~~ 149 (264)
T PRK11752 89 SSGFV-EINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA--FLPKDLAARTETLNWLFW 149 (264)
T ss_pred CHHHH-hhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC--cCCCCHHHHHHHHHHHHH
Confidence 67765 6999999999998532 47999999999999999973 334577888999999764
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.75 E-value=1.2e-17 Score=147.44 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=83.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCC
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~ 213 (288)
+|+||+++.||+|++|+++|+|+||+|+.+.++.. .+.++++ ++||.++||+|+| +|..|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~-~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLI-DLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHH-HhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 69999999999999999999999999999999864 3455665 6999999999998 789999999999999999986
Q ss_pred CCCCCCChHHHHHHHhHhHH
Q 023026 214 GRSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 214 ~~~p~~~~~era~v~~Wl~t 233 (288)
....+.++.+++.+..|+..
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~ 105 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHR 105 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 55445677788888888753
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.74 E-value=1.8e-17 Score=146.56 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=83.7
Q ss_pred CceEEEEeC--CChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 133 TRLQLFEFE--ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 133 ~~LtLY~~e--~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++++||+.+ .||+|++|+++|+|+||+|+.+.++. +++..++++ ++||.++||+|+| +|..|+||.||++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~-~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQ-GYSLTRRVPTLQH--DDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHH-hcCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 479999975 69999999999999999999998864 444556765 6999999999998 6899999999999999
Q ss_pred HHhCCCC---CCCCChHHHHHHHhHhHHH
Q 023026 209 QQYGKGR---SPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 209 e~Y~~~~---~p~~~~~era~v~~Wl~t~ 234 (288)
++|+... ..+.+..+++.+.+|+...
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~ 109 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWL 109 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 9998654 4456788889888887543
No 5
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.71 E-value=3.3e-17 Score=123.17 Aligned_cols=74 Identities=28% Similarity=0.554 Sum_probs=66.3
Q ss_pred EEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 137 LFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 137 LY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
||+++.||||+||+++|+++||+|+.++++.+. +..+ +.+++|.++||+|++ +|..|+||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~~~~-~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-KRPE-FLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-TSHH-HHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-chhH-HHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999998653 3445 457999999999997 6999999999999999999864
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.8e-16 Score=139.16 Aligned_cols=98 Identities=23% Similarity=0.388 Sum_probs=80.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCC-cCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~-~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~ 213 (288)
++||+...||+|+||+++|.|+||+|+.+.++... ...++|+ ++||.++||+|+|+ +|.+|+||.||++||+++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~-~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFL-ALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHH-hcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCC
Confidence 58999999999999999999999999999987653 4556654 79999999999985 444899999999999999997
Q ss_pred CCCCCCCh---HHHHHHHhHhHHH
Q 023026 214 GRSPSTGL---LESTLITGWMPTI 234 (288)
Q Consensus 214 ~~~p~~~~---~era~v~~Wl~t~ 234 (288)
....|.+. .+++.+..|+...
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~ 102 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFA 102 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHH
Confidence 73333333 3678888887644
No 7
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.68 E-value=1.4e-16 Score=117.93 Aligned_cols=72 Identities=26% Similarity=0.462 Sum_probs=63.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
++||+++.||+|++|+++|+++|++|+.+.++. ++...+++ .++||.++||+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEF-LKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHH-HhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 589999999999999999999999999998863 43445665 47999999999998 58999999999999974
No 8
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.68 E-value=1.7e-16 Score=116.85 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=64.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
|+||+++.||+|++++++|+++|++|+.++++.. ...+++ +++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDL-AELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHH-HhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998754 334554 56999999999998 6789999999999999876
No 9
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.68 E-value=3.5e-16 Score=137.95 Aligned_cols=97 Identities=22% Similarity=0.353 Sum_probs=79.8
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeC---CCC--eeecChHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDP---NTG--VSMYESGDIVNY 206 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDp---n~G--~~L~ES~aIl~Y 206 (288)
|++||+.+ +|+|++|+++|+|+||+|+.+.++. +.+..++|+ ++||.++||+|+|. ++| .+|+||.||++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL-RISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHH-hhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 58999886 7999999999999999999988753 444567765 69999999999973 245 579999999999
Q ss_pred HHHHhCCCCCCCCChHHHHHHHhHhHHH
Q 023026 207 LFQQYGKGRSPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 207 L~e~Y~~~~~p~~~~~era~v~~Wl~t~ 234 (288)
|+++|+ ..++.++.+++.+.+|+...
T Consensus 79 L~~~~~--~l~p~~~~~ra~~~~~~~~~ 104 (215)
T PRK13972 79 LAEKTG--LFLSHETRERAATLQWLFWQ 104 (215)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHHHHHH
Confidence 999986 34455778889999998654
No 10
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=3e-16 Score=118.81 Aligned_cols=78 Identities=28% Similarity=0.539 Sum_probs=66.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCC-CCeeecChHHHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn-~G~~L~ES~aIl~YL~e~ 210 (288)
|++||+++. |+|++|+++|+++||+|+.+.++. +....+++. ++||.++||+|+|++ +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFL-KINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHH-HhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 589999985 999999999999999999988863 334456654 699999999999842 189999999999999999
Q ss_pred hCC
Q 023026 211 YGK 213 (288)
Q Consensus 211 Y~~ 213 (288)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 873
No 11
>PLN02473 glutathione S-transferase
Probab=99.67 E-value=4.7e-16 Score=136.37 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=82.5
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
-|+||+++.||+|++|+++|+|+||+|+.+.++. ++...++++ ++||.++||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 4799999999999999999999999999987754 345677776 5899999999998 6899999999999999999
Q ss_pred CCC--CCCCCChHHHHHHHhHhHHH
Q 023026 212 GKG--RSPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 212 ~~~--~~p~~~~~era~v~~Wl~t~ 234 (288)
+.. ...+.+..+++.+.+|+...
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~~ 103 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEVE 103 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 753 23355677788899888643
No 12
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.66 E-value=3.2e-16 Score=118.19 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=62.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++||+++.||+|++|+++|+|+|++|+.+.++. +.++.++++ ++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988754 334556654 7999999999998 7899999999999984
No 13
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.64 E-value=1.1e-15 Score=113.90 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=63.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCC-CcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~-~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
|+||+++.||+|++|+++|+++|++|+.+.++.. .+.+++ +++||. ++||+|+| +|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~-~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELL-LASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHH-HHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999887654 344555 469995 99999998 6899999999999999875
No 14
>PRK10387 glutaredoxin 2; Provisional
Probab=99.63 E-value=2.1e-15 Score=131.38 Aligned_cols=92 Identities=28% Similarity=0.505 Sum_probs=73.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
|+||++..||+|+||+++|+++||+|+.++++.+.+..+ + +++|.++||+|+.+ +|..|+||.+|++||+++|++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~--~-~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATP--I-RMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhH--H-HhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 689999999999999999999999999999876543222 3 58999999999532 6899999999999999999865
Q ss_pred CCCCCChHHHHHHHhHhHH
Q 023026 215 RSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 215 ~~p~~~~~era~v~~Wl~t 233 (288)
...+. +++.+.+|+..
T Consensus 77 ~l~~~---~~~~~~~~~~~ 92 (210)
T PRK10387 77 LLTGK---RSPAIEEWLRK 92 (210)
T ss_pred cCCCc---ccHHHHHHHHH
Confidence 44312 34566677653
No 15
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.63 E-value=1.2e-15 Score=111.74 Aligned_cols=72 Identities=26% Similarity=0.324 Sum_probs=61.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
|+||+++.||+|++++++|.++||+|+.+.++. +....+++ .++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~-~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEF-LAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHH-HhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999988763 33344554 579999999999864 6789999999999985
No 16
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.63 E-value=1.2e-15 Score=112.72 Aligned_cols=71 Identities=30% Similarity=0.506 Sum_probs=61.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
|+||++..||||+|||++|.++|++|+.+.++.+. ....+ +.+|.++||+|+++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~-~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPI-RMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHH-HhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887542 22333 57999999999983 58999999999999974
No 17
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.63 E-value=1.6e-15 Score=112.97 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=63.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCC--CcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg--~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
|+||+++.||+|++++++|+++|++|+.+.++.. +.+.++ ++++||.++||+|++ +|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~-~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPE-HLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHH-HHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999887643 233455 457999999999998 689999999999999863
No 18
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.2e-16 Score=135.82 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=82.8
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcC--CCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~--kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
.+.+||++..|..++|||++|..+||+|++++|+ ++.......++++||.+|||+|++ +|.+|.||.||++||+|+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEET 81 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhc
Confidence 3678999999999999999999999999999885 332233333568999999999999 899999999999999999
Q ss_pred hCCCCCCCCChHHHHHHHhHhHH
Q 023026 211 YGKGRSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 211 Y~~~~~p~~~~~era~v~~Wl~t 233 (288)
|+++..+|.|+..|+.+.+-...
T Consensus 82 ~P~ppLLP~d~~KRA~~r~i~~~ 104 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKRAKARAISLL 104 (217)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH
Confidence 99988888888877776655443
No 19
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.62 E-value=1.7e-15 Score=112.42 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=60.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHH
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL 207 (288)
+||++..||+|++|+++|+++|++|+.+.++... ..+++ +++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~-~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAEM-LAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHH-HHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999987642 34554 579999999999984 588999999999996
No 20
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.7e-15 Score=111.11 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=62.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++||+++.||+|++|+++|+++|++|+.+.++. +.+..+++ .++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEF-LALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHH-HHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999998863 33445555 46999999999998 5899999999999984
No 21
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.62 E-value=2.5e-15 Score=112.45 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=64.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCC--CcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg--~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
++||+++.|++|++|+++|+++|++|+.+.++.. +...+++ .++||.++||+|++ +|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~-~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEF-KKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHH-HHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999888642 3334554 46999999999998 6789999999999999876
No 22
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.61 E-value=3.2e-15 Score=111.95 Aligned_cols=75 Identities=23% Similarity=0.496 Sum_probs=63.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCC--CCeeecChHHHHHHHHHHh
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn--~G~~L~ES~aIl~YL~e~Y 211 (288)
.++||+++.||||++|+.+|.++||+|+.++++.. ..++ + +.+|.++||+|++++ +|..|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~-~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKE-I-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHH-H-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 48999999999999999999999999999988532 1223 4 479999999999742 4789999999999999875
Q ss_pred C
Q 023026 212 G 212 (288)
Q Consensus 212 ~ 212 (288)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 23
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.5e-15 Score=134.80 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=87.0
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC-CCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln-P~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
..+.||++..|||++||+++|.++||+|++++++... .++++.+.| +.++||+|++ +|..|+||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 5799999999999999999999999999999988653 455566788 7999999998 6888999999999999999
Q ss_pred CC-CCCCCCChHHHHHHHhHhHHHh
Q 023026 212 GK-GRSPSTGLLESTLITGWMPTIF 235 (288)
Q Consensus 212 ~~-~~~p~~~~~era~v~~Wl~t~l 235 (288)
++ ...+|.|+.+++...-|+..+-
T Consensus 84 ~~~~~iLP~DPy~Ra~arfwa~~id 108 (231)
T KOG0406|consen 84 PSGPPILPSDPYERAQARFWAEYID 108 (231)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 95 5667889999999999986543
No 24
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.59 E-value=5.9e-15 Score=128.62 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=81.0
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCC---CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhC
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPK---GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k---g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~ 212 (288)
+||++..||+|++|+++|.++||+|+.+.++. +.+..+++ +++||.++||+|+| +|..|+||.+|+.||+++|+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEF-LALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhh-hhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 48988899999999999999999999988874 23344554 57999999999998 78999999999999999998
Q ss_pred CCCCCCCChHHHHHHHhHhHHH
Q 023026 213 KGRSPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 213 ~~~~p~~~~~era~v~~Wl~t~ 234 (288)
+....+.+..+++.+.+|+...
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~ 99 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLI 99 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 7555456778899999997654
No 25
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.59 E-value=7.5e-15 Score=127.69 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=76.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
++||++..||++++|+++|+++||+|+.+.++... ...+ +.++||.++||+|++. +|.+|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~-~~~~-~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN-ADNG-VAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC-Cchh-hhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999998876421 2233 4468999999999842 6899999999999999998765
Q ss_pred CCCCCChHHHHHHHhHhH
Q 023026 215 RSPSTGLLESTLITGWMP 232 (288)
Q Consensus 215 ~~p~~~~~era~v~~Wl~ 232 (288)
...+.+..+++.+.+|+.
T Consensus 78 ~l~p~~~~~~a~~~~~~~ 95 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEA 95 (202)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 445566777777777753
No 26
>PLN02395 glutathione S-transferase
Probab=99.59 E-value=1.4e-14 Score=127.01 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=78.5
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
.++||+... ++++||+++|.|+||+|+.+.++. +....++++ ++||.++||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYL-ALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHH-hhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 479999765 468999999999999999988763 334556655 6999999999998 6789999999999999999
Q ss_pred CCC--CCCCCChHHHHHHHhHhHH
Q 023026 212 GKG--RSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 212 ~~~--~~p~~~~~era~v~~Wl~t 233 (288)
+.. ...+.+..+++.+.+|+..
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~ 101 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDV 101 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHH
Confidence 752 2445577788888888764
No 27
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.59 E-value=5.3e-15 Score=110.09 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=61.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++||+++.||+|++|+++|+++|++|+.+.++. ++...+++. ++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~-~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFL-AMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHH-hhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 589999999999999999999999999988753 334455654 6999999999998 6889999999999984
No 28
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.59 E-value=5.7e-15 Score=110.83 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=62.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCC-cCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~-~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
+||+++.||+|++++++|+++|++|+.+.++... +..+++ +++||.++||+|+++ +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~-~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEF-LKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHH-HHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 6999999999999999999999999999887542 445564 579999999999974 57899999999999976
No 29
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.59 E-value=6e-15 Score=117.45 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 141 e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
..||||++||++|.++||+|++++++... .++.+.++||.++||+|+| +|.+++||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 36999999999999999999999997653 3344567999999999998 6899999999999999998754
No 30
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.58 E-value=3.6e-15 Score=110.51 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=62.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
++||+++.|++|++||++|+++|++|+.+.++......++ +.++||.++||+|+| +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELD-LKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhh-hccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999988754333344 456999999999998 68999999999999974
No 31
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.58 E-value=1.3e-14 Score=112.96 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCCceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 130 ~p~~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
.-.++++||+++.||+|++|+++|.++||+|+.++++... ..++ +.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~-~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDW-FLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHH-HHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 3346799999999999999999999999999999887542 2334 4579999999999973 4889999999999985
No 32
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.58 E-value=9.8e-15 Score=109.31 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=63.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~ 212 (288)
++||+++.| +|++|+++|.++||+|+.+.++. +..+.++++ ++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYL-AINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHH-HhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999866 69999999999999999988764 333455654 69999999999984 48999999999999999885
No 33
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.58 E-value=9.7e-15 Score=109.74 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=61.1
Q ss_pred ceEEEEeC-------CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHH
Q 023026 134 RLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (288)
Q Consensus 134 ~LtLY~~e-------~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~Y 206 (288)
|++||.++ .||+|++|+++|+++|++|+.+.++. ++++|.++||+|++ +|..|+||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 57999998 57999999999999999999987753 15899999999998 68999999999999
Q ss_pred HHHHhC
Q 023026 207 LFQQYG 212 (288)
Q Consensus 207 L~e~Y~ 212 (288)
|+++|+
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999985
No 34
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.57 E-value=1.4e-14 Score=128.37 Aligned_cols=89 Identities=30% Similarity=0.462 Sum_probs=71.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE-eCCCCeeecChHHHHHHHHHHhCCC
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv-Dpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
+||++..||||+|||++|.++||+|+.+++..+... .. .++||.++||+|+ | +|..|+||.+|++||+++|+..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~-~~~np~g~vP~l~~~--~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TP-IRMIGAKQVPILQKD--DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hH-HHhcCCCCcceEEee--CCeEeccHHHHHHHHHHhCCCc
Confidence 589999999999999999999999999988765432 22 3689999999998 5 7899999999999999999764
Q ss_pred CCCCCChHHHHHHHhHhH
Q 023026 215 RSPSTGLLESTLITGWMP 232 (288)
Q Consensus 215 ~~p~~~~~era~v~~Wl~ 232 (288)
..++. ++..+.+|+.
T Consensus 76 ~~~~~---~~~~~~~~~~ 90 (209)
T TIGR02182 76 LLTGK---VSPEIEAWLR 90 (209)
T ss_pred cCCCC---ChHHHHHHHH
Confidence 33322 2345556653
No 35
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.57 E-value=1.3e-14 Score=125.70 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=77.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCC--C-cCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--S-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg--~-~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
|+||+... +++++|+++|+++||+|+.+.++.. . ...+++ .++||.++||+|+++ +|..|+||.+|++||+++|
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~-~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDY-LAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHH-HHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhC
Confidence 58999875 4799999999999999999877642 2 233555 479999999999853 7899999999999999999
Q ss_pred CCCC-CCCCChHHHHHHHhHhHHH
Q 023026 212 GKGR-SPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 212 ~~~~-~p~~~~~era~v~~Wl~t~ 234 (288)
+... .++.+..+++.+.+|+...
T Consensus 78 ~~~~l~~p~~~~~ra~~~~~~~~~ 101 (201)
T PRK10542 78 PDRQLLAPVGSLSRYHTIEWLNYI 101 (201)
T ss_pred cccccCCCCCcHHHHHHHHHHHHH
Confidence 8654 4455677888888887654
No 36
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.57 E-value=5.8e-15 Score=110.58 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
+++||+++.|++|++||++|+++|++|+.+.++.+. ..++ ++++||.++||+|+| +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~-~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE-WQES-LKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH-hhhh-hhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 479999999999999999999999999999887532 2334 457999999999998 689999999999999863
No 37
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.2e-14 Score=129.72 Aligned_cols=100 Identities=31% Similarity=0.498 Sum_probs=87.1
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEc--CCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHh
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPC--PKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V--~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y 211 (288)
.++||++..+|.|++|.+++.++|++|+.+.+ ..+++..++|+ ++||.++||+|+| +|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 58899999999999999999999999999855 45778889988 6999999999999 5999999999999999999
Q ss_pred C-CCC-CCCCChHHHHHHHhHhHHHhh
Q 023026 212 G-KGR-SPSTGLLESTLITGWMPTIFR 236 (288)
Q Consensus 212 ~-~~~-~p~~~~~era~v~~Wl~t~lr 236 (288)
+ .+. .++.+..+++.+.+|+.....
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~ 105 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENG 105 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhc
Confidence 7 223 567778889999999965433
No 38
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.56 E-value=1.7e-14 Score=106.93 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=63.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCC--CcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg--~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~ 212 (288)
|+||+++. ++|++|+++|+++|++|+.+.++.. ..+.+++ +++||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEY-LAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHH-HhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999875 6899999999999999999888643 3445555 46999999999998 68999999999999999885
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.55 E-value=1.8e-14 Score=106.89 Aligned_cols=71 Identities=24% Similarity=0.356 Sum_probs=61.5
Q ss_pred eEEEEeCCChhHHHHHHHHHH--cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITE--LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~E--lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++||++..||+|++|+++|++ +|++|+.+.++.. .+.++++ ++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~-~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLL-AVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHH-HhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988743 3345654 69999999999864 6899999999999984
No 40
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.54 E-value=1.2e-14 Score=108.48 Aligned_cols=67 Identities=37% Similarity=0.569 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHHcCCceEEEEcC---CCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 142 ACPFCRRVREAITELDLSVEVFPCP---KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 142 ~SPfCrkVr~~L~ElgIpye~~~V~---kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
.||||+||+++|+++||+|++..+. ++..+.+++ .++||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~-~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEF-LALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBH-HHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhh-hccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4999999999999999999987762 233333554 579999999999997 788999999999999974
No 41
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.53 E-value=2.5e-14 Score=109.31 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCCCc-CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhC
Q 023026 141 EACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (288)
Q Consensus 141 e~SPfCrkVr~~L~ElgIpye~~~V~kg~~-~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~ 212 (288)
..||+|+|||++|.++||+|+.+.++.... ...+++ ++||.++||+|+|+ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 479999999999999999999988763321 112234 68999999999983 38899999999999999875
No 42
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.53 E-value=4.8e-14 Score=99.50 Aligned_cols=71 Identities=34% Similarity=0.454 Sum_probs=61.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
++||+++.||+|++++++|+++|++|+.+.++.......+ +++.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEE-FLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHH-HHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998765433333 557899999999998 5899999999999984
No 43
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.53 E-value=3.4e-14 Score=104.40 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=61.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCC--CCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~k--g~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
|+||++..|++|++++++|.++|++|+.+.++. +....+++ ++++|.++||+|+| +|..|+||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAY-RALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHH-HHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988763 33344554 56999999999998 5889999999999984
No 44
>PLN02378 glutathione S-transferase DHAR1
Probab=99.51 E-value=1e-13 Score=123.01 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=70.6
Q ss_pred EeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCCCCCC
Q 023026 139 EFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (288)
Q Consensus 139 ~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~~~p~ 218 (288)
.+..||||++|+++|+++|++|+.+.++.. .+.++|+ ++||.++||+|+| +|.+|+||.+|+.||+++|+....
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~l-~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~~l-- 89 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS-DKPQWFL-DISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDPPL-- 89 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc-cCCHHHH-HhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCCCC--
Confidence 345699999999999999999999988764 2445665 6999999999998 678999999999999999985432
Q ss_pred CChHHHHHHHhHhH
Q 023026 219 TGLLESTLITGWMP 232 (288)
Q Consensus 219 ~~~~era~v~~Wl~ 232 (288)
.++.+++.+.+++.
T Consensus 90 ~~~~~~a~i~~~~~ 103 (213)
T PLN02378 90 KTPAEFASVGSNIF 103 (213)
T ss_pred CCHHHHHHHHHHHH
Confidence 34556666666553
No 45
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.45 E-value=1.7e-13 Score=104.51 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=60.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHh-----CCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL-----GGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~l-----nP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
.+||+++.++.|++|+++|+++|++|+.+.++.+ +++. +. .|.++||+|+| +|..|+||.||+.||.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~-~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLE-KLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHH-hhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHH
Confidence 5899999999999999999999999999988653 2222 23 35899999998 68999999999999999
Q ss_pred HhC
Q 023026 210 QYG 212 (288)
Q Consensus 210 ~Y~ 212 (288)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 46
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.45 E-value=2.4e-13 Score=104.63 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCCC--CcC-CHHHHHHh----CCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIR-HREMVRRL----GGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg--~~~-~~efLk~l----nP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
+||.+..++.|++++++|+++||+|+.+.++.. +.. .+++.... .|.++||+|+| +|..|+||.||+.||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 689999999999999999999999999888642 221 23443222 29999999998 6899999999999999
Q ss_pred HHh
Q 023026 209 QQY 211 (288)
Q Consensus 209 e~Y 211 (288)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 47
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.44 E-value=8.5e-13 Score=121.07 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=62.5
Q ss_pred eCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 140 ~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
...||||++|+++|.++||+|+++.++... +.++|+ ++||.++||+|+| +|.+|+||.+|++||+++|+..
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~-~~~~fl-~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR-KPEDLQ-NLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC-CCHHHH-HHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999997653 345655 7999999999998 6899999999999999999753
No 48
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.44 E-value=5.1e-13 Score=99.13 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=56.9
Q ss_pred eEEEEeC-------CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHH
Q 023026 135 LQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (288)
Q Consensus 135 LtLY~~e-------~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL 207 (288)
++||.+. .||+|++|+++|+++||+|+.++++.. .++|.++||+|++ +|..++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 4677766 899999999999999999999988642 1789999999998 689999999999999
Q ss_pred HHH
Q 023026 208 FQQ 210 (288)
Q Consensus 208 ~e~ 210 (288)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 874
No 49
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.43 E-value=6.6e-13 Score=123.29 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCCCCCCCC
Q 023026 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTG 220 (288)
Q Consensus 141 e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~~~p~~~ 220 (288)
..||||++|+++|+|+||+|+++.++.. .+.++|+ ++||.++||+|++ +|..|+||.+|++||+++|+.... .+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~-~~~~~fl-~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~~L--~~ 144 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT-NKPEWFL-KISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDPPL--AT 144 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC-cCCHHHH-hhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCCCC--CC
Confidence 3499999999999999999999988764 2445554 7999999999998 567999999999999999987533 34
Q ss_pred hHHHHHHHhHhHH
Q 023026 221 LLESTLITGWMPT 233 (288)
Q Consensus 221 ~~era~v~~Wl~t 233 (288)
+.+++.+.+|+..
T Consensus 145 ~~era~i~~~l~~ 157 (265)
T PLN02817 145 PPEKASVGSKIFS 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 6677888887643
No 50
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.40 E-value=1.1e-12 Score=98.57 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=56.2
Q ss_pred eCCChhHHHHHHHHHHcCCceEEEEcCCCCc-CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 140 FEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 140 ~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~-~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
...||+|++|+++|+++|++|+.+.++.... ..++ ++++||.++||+|++ +|..|+||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~-~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRAR-ILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHH-HHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4579999999999999999999998865432 3445 457999999999998 6889999999999984
No 51
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.37 E-value=2.9e-12 Score=97.03 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=56.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcC--CCCcCCHHHHHHhCCC-CcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~--kg~~~~~efLk~lnP~-~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
++||.+. .+|.++|++|+++|++|+.+.++ .+.++.++|. +.+|. ++||+|+|+ +|..|+||.||++||++
T Consensus 3 l~l~~~~--~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~-~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGR--GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFL-AINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSS--TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHH-HHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCC--CchHHHHHHHHHhcccCceEEEecccccccchhhh-hcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 5555554 49999999999999999998775 3444556654 79999 999999994 49999999999999985
No 52
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.36 E-value=4.1e-12 Score=111.84 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=64.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHH-------HhCCCCcccEEEeCCCCeeecChHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVR-------RLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk-------~lnP~~qVPvLvDpn~G~~L~ES~aIl~Y 206 (288)
+++||+++.+++|++||++|+++|++|+.+.++. .. .+++. ++||.++||+|+| +|.+|+||.||+.|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 4899999999999999999999999999997742 22 23331 3799999999999 68999999999999
Q ss_pred HHHHhCC
Q 023026 207 LFQQYGK 213 (288)
Q Consensus 207 L~e~Y~~ 213 (288)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999974
No 53
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.27 E-value=2.9e-11 Score=92.23 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=64.3
Q ss_pred CCCCceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 130 ~p~~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
...++++||+.++||+|++++.+|+++||+|+.+++++... ..+ ++++++..+||+++. +|..|.++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~~-~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GRS-LRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HHH-HHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 34568999999999999999999999999999999986532 233 456788999999987 7899999999999984
No 54
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-11 Score=107.69 Aligned_cols=92 Identities=28% Similarity=0.448 Sum_probs=74.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
|+||-|+.||||.|+|++.-.+|||++.+-+..++...+- ++-|.+|||+|+-. +|..|-||.+|+.|+++.++..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh---hhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 5799999999999999999999999999887766655653 46689999999864 8999999999999999999864
Q ss_pred CCCCCChHHHHHHHhHhHH
Q 023026 215 RSPSTGLLESTLITGWMPT 233 (288)
Q Consensus 215 ~~p~~~~~era~v~~Wl~t 233 (288)
..- ...+..+..|+..
T Consensus 77 ~lt---~~~~pai~~wlrk 92 (215)
T COG2999 77 LLT---GKVRPAIEAWLRK 92 (215)
T ss_pred hhc---cCcCHHHHHHHHH
Confidence 221 1123567778754
No 55
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.22 E-value=7.6e-11 Score=87.72 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=62.0
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
+++||+.++||+|.+++.+|+++|++|+.++++.+. ..+.++++++..+||+++. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999998654 2334556788999999987 6889999999999984
No 56
>PRK10638 glutaredoxin 3; Provisional
Probab=99.09 E-value=5.2e-10 Score=85.76 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=61.7
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
.++||+.++||||++++.+|+++||+|+.++|+.+.. .++.+.+++|..+||+++. +|..+....++..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~-~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA-KREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 5999999999999999999999999999999986532 2344567899999999987 6899999988887744
No 57
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.04 E-value=5.3e-10 Score=85.97 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=52.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
...|+. .+++|.+++++|+++|+||+.+....+ + ..+|.++||+|++ +|.+|.||.+|+.||.++
T Consensus 10 ~~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~-----~---~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 10 EQILLP--DNASCLAVQTFLKMCNLPFNVRCRANA-----E---FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CeeecC--CCCCHHHHHHHHHHcCCCcEEEecCCc-----c---ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 345553 478999999999999999999854321 1 2567899999998 788999999999999864
No 58
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.02 E-value=1.7e-09 Score=77.40 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=60.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~Y 206 (288)
+++||+.++||+|++++.+|.+++++|+.+++..+.. ..+.+.+++|..++|+++. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4789999999999999999999999999999986543 4455667899999999988 68899999888753
No 59
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.00 E-value=4.5e-10 Score=104.72 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCCCceEEEEeCCChhHHHHHHHHHHcCCceEEEEcC--CCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHH
Q 023026 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (288)
Q Consensus 130 ~p~~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~--kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL 207 (288)
.+...++||+++.+-.++|||+++.|+||+|+.++|+ .|.+..++|+ .+||++.||||++ +..+|.|+..||+|+
T Consensus 22 ~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFm-rlNp~gevPVl~~--g~~II~d~tqIIdYv 98 (325)
T KOG4420|consen 22 WPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFM-RLNPGGEVPVLIH--GDNIISDYTQIIDYV 98 (325)
T ss_pred CchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchhe-ecCCCCCCceEec--CCeecccHHHHHHHH
Confidence 3444599999999999999999999999999998774 5778888887 5999999999998 678999999999999
Q ss_pred HHHhCCC
Q 023026 208 FQQYGKG 214 (288)
Q Consensus 208 ~e~Y~~~ 214 (288)
+++|-..
T Consensus 99 Ertf~ge 105 (325)
T KOG4420|consen 99 ERTFTGE 105 (325)
T ss_pred HHhhccc
Confidence 9998543
No 60
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.99 E-value=1.6e-09 Score=80.85 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=57.7
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
.++||+.++||+|++++.+|+++||+|+.+++.++... ++.+++++|..+||+++. +|..+..-.++..
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 58999999999999999999999999999999876433 344667899999999987 6777777666544
No 61
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=2.3e-09 Score=77.29 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=57.8
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee--cChHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--YESGDIVNYL 207 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L--~ES~aIl~YL 207 (288)
+++||+.++||+|++++.+|++++++|+.++++.+....++ +.+.++...||++++ +|..+ ++..+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~-~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREE-VLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHH-HHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 58999999999999999999999999999999865432333 445788999999998 47666 6777777765
No 62
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.93 E-value=5e-09 Score=77.62 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=57.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCC-cccEEEeCCCCeeecChHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~-qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
+++||+.+.||+|.+++.+|+++||+|+.++++.......+ +.+..+.. +||+++. +|..+.+..++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~-~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREE-MINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHH-HHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 37999999999999999999999999999999865222233 33444554 9999987 6889999999988743
No 63
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.91 E-value=7.6e-09 Score=76.20 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=58.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC-CCCcccEEEeCCCCeeecC--hHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYE--SGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln-P~~qVPvLvDpn~G~~L~E--S~aIl~YL~ 208 (288)
.++||+.++||+|++++.+|++++++|+.++++++. ...+++++++ +...||+++.. +|..+.+ ..+|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE-GAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH-hHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 378999999999999999999999999999998654 3345566676 89999999753 6766665 567777775
No 64
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.91 E-value=8.1e-09 Score=97.43 Aligned_cols=69 Identities=28% Similarity=0.519 Sum_probs=58.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
.|+||.|+.||||-|||.+|+..||+|++++|+.- .+..+ +.....+||+|+. .|+.|.||.+||.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV---~r~eI-k~SsykKVPil~~--~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV---LRQEI-KWSSYKKVPILLI--RGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch---hhhhc-cccccccccEEEe--ccceechhHHHHHHHH
Confidence 68999999999999999999999999999998642 33334 3677899999987 5778999999997663
No 65
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.2e-09 Score=79.82 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=59.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc-CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~-~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
.+++|..++||||.+++.+|.++|++|+.++++..+. ..++++++.+|..+||+++. +|..+....++-++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHh
Confidence 5899999999999999999999999999999987653 33466666678999999988 5667766666655543
No 66
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.87 E-value=1.5e-08 Score=77.79 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=63.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHH-----cCCceEEEEcCCCCcCCHHHHHHhCCC--CcccEEEeCCCCeeecChHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNY 206 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~E-----lgIpye~~~V~kg~~~~~efLk~lnP~--~qVPvLvDpn~G~~L~ES~aIl~Y 206 (288)
.++||+.++||+|.+++.+|++ .|++|+.+++..... ..+.+.+..+. ..||.+.. +|..+.+..+|.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~-~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI-SKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH-HHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHH
Confidence 5899999999999999999999 799999999985432 23335555544 68999987 68999999999999
Q ss_pred HHHHhC
Q 023026 207 LFQQYG 212 (288)
Q Consensus 207 L~e~Y~ 212 (288)
+.++|+
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 999886
No 67
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.87 E-value=1.4e-08 Score=78.93 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=60.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCC--CcccEEEeCCCCeeecChHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNYL 207 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~--~qVPvLvDpn~G~~L~ES~aIl~YL 207 (288)
++||+.++||+|.+++.+|+++ +++|+.+++.... ..++.+.+..+. ..||++.. +|..+.++.+|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 6899999999999999999998 4678888887432 223335556554 68999987 689999999999999
Q ss_pred HHHhC
Q 023026 208 FQQYG 212 (288)
Q Consensus 208 ~e~Y~ 212 (288)
.++|+
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99875
No 68
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.81 E-value=1.7e-08 Score=72.70 Aligned_cols=63 Identities=14% Similarity=0.381 Sum_probs=51.5
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecC
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~E 199 (288)
.+++|+..+||+|++++++|.+++++|..++++.+.. ..+.+.+++|..+||++++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~-~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE-ALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH-HHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 4799999999999999999999999999999986533 3344667889999999998 4555543
No 69
>PHA03050 glutaredoxin; Provisional
Probab=98.77 E-value=3.3e-08 Score=80.70 Aligned_cols=72 Identities=17% Similarity=0.372 Sum_probs=60.9
Q ss_pred CCceEEEEeCCChhHHHHHHHHHHcCC---ceEEEEcCCCCc--CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 132 PTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 132 ~~~LtLY~~e~SPfCrkVr~~L~ElgI---pye~~~V~kg~~--~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
.++++||+.++||||.+++.+|+++++ +|+.+++++.+. ..++.++++++..+||.++. +|..+....++..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 457999999999999999999999999 899999986322 23566778899999999987 6888888888776
No 70
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.77 E-value=3.9e-08 Score=73.67 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=62.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc--CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~--~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
++++|+.++||+|.+++.+|.+++++|+.++++..+. ..++.++++++...+|++.. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999999999876532 12345667888899999987 68899999999998765
No 71
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.74 E-value=4.4e-08 Score=73.74 Aligned_cols=72 Identities=13% Similarity=0.302 Sum_probs=59.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
++||+.++||+|.+++.+|+++|++|+.++++.... ..+.+.+..+...||+++. +|..+....++..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~-~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA-LRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 589999999999999999999999999999986532 3333556778899999987 68888888888876544
No 72
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.73 E-value=7.1e-08 Score=77.22 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCCceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcC--CHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHH
Q 023026 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (288)
Q Consensus 131 p~~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~--~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~Y 206 (288)
.+++++||+.++||||++++.+|+++|++|+.++|+..... ..+.+.++++..+||.+.. +|..+....++...
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l 81 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMAL 81 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHH
Confidence 45789999999999999999999999999999999865321 1234556678999999977 68888888887774
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.73 E-value=6.5e-08 Score=74.89 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=52.7
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee--ecChHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS--MYESGDIVNYL 207 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~--L~ES~aIl~YL 207 (288)
+++||+.++||+|.+++.+|+++||+|+.++++.+. ...+.++ .+|..+||+++.. +.. =|+...|-+..
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~~-~~g~~~vPvv~i~--~~~~~Gf~~~~l~~~~ 73 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETLR-AQGFRQLPVVIAG--DLSWSGFRPDMINRLH 73 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCCCcCEEEEC--CEEEecCCHHHHHHHH
Confidence 589999999999999999999999999999998643 2334454 4688999999883 432 33444454443
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.69 E-value=2.9e-08 Score=71.41 Aligned_cols=59 Identities=20% Similarity=0.476 Sum_probs=50.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
++||+.++||+|.+++.+|+++|++|+.++++... ..++.+++..+..++|++.. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEE
Confidence 58999999999999999999999999999998653 34566777778999999987 5654
No 75
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.69 E-value=9.1e-08 Score=76.36 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=61.6
Q ss_pred CCCceEEEEe-----CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 131 p~~~LtLY~~-----e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
.++++.||.. ++||||.+++.+|.++|++|+.+++..+ ...++.++++++..+||.+.. +|..+....++..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHH
Confidence 4578999976 7899999999999999999999999754 344566777888999999987 6888888888776
Q ss_pred HH
Q 023026 206 YL 207 (288)
Q Consensus 206 YL 207 (288)
..
T Consensus 87 l~ 88 (97)
T TIGR00365 87 MY 88 (97)
T ss_pred HH
Confidence 53
No 76
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.68 E-value=5.1e-08 Score=72.79 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=45.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
++||+.++||+|++++.+|+++||+|+.+++..+. ...+.+++ .+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVKA-QGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHH-cCCcccCEEEE
Confidence 58999999999999999999999999999998653 23444543 57889999987
No 77
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.64 E-value=1.6e-07 Score=73.50 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCCceEEEEe-----CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 131 p~~~LtLY~~-----e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
-++++++|.. ++||||.+++.+|+++|++|+.+++..+ ...++.+.+.++..+||++.. +|..+....++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHH
Confidence 3468999987 5999999999999999999999999765 334566777888999999987 6888988888887
Q ss_pred HH
Q 023026 206 YL 207 (288)
Q Consensus 206 YL 207 (288)
..
T Consensus 83 l~ 84 (90)
T cd03028 83 MH 84 (90)
T ss_pred HH
Confidence 54
No 78
>PLN02907 glutamate-tRNA ligase
Probab=98.63 E-value=1.7e-07 Score=98.41 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=70.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~ 214 (288)
++||..+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|..|+||.||+.||+++|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 7899887654 5568999999999999864 2579999999964 6889999999999999999766
Q ss_pred CCCCCChHHHHHHHhHhHHH
Q 023026 215 RSPSTGLLESTLITGWMPTI 234 (288)
Q Consensus 215 ~~p~~~~~era~v~~Wl~t~ 234 (288)
...+.+..+++++.+|+...
T Consensus 67 ~L~p~d~~erAqV~qWL~~~ 86 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYA 86 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 55566788899999998764
No 79
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.63 E-value=1.8e-07 Score=71.11 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 142 ~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
.+|+|.++..+|+..|++|+++.... + ...|++++|+|++ +|+.+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-----~----~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-----P----WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-----C----CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 57999999999999999999875431 1 2578999999998 689999999999999875
No 80
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.62 E-value=2.2e-07 Score=69.57 Aligned_cols=73 Identities=18% Similarity=0.410 Sum_probs=60.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCc--eEEEEcCCCCc--CCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAITELDLS--VEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIp--ye~~~V~kg~~--~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
+++|+.++||+|++++.+|++++++ |+.++++.... ...+++.+..+..++|.+.. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 5789999999999999999999999 99998876432 12344666778889999987 68899999999988654
No 81
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.8e-07 Score=81.03 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=72.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCC
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~ 213 (288)
.++|+.|.....|..+|+++...|++||.+.+..++. - ..++...|.+|+|+|.. ||..|.+|.||++||+++||-
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w-~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-W-EELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-h-hhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhCc
Confidence 5799999999999999999999999999999987752 1 12344589999999976 699999999999999999983
Q ss_pred CCCCCCChHHHHHHHhHh
Q 023026 214 GRSPSTGLLESTLITGWM 231 (288)
Q Consensus 214 ~~~p~~~~~era~v~~Wl 231 (288)
. .....|.+.+....
T Consensus 79 ~---Gkt~~E~a~vD~i~ 93 (206)
T KOG1695|consen 79 A---GKTEEEEAWVDMIV 93 (206)
T ss_pred C---CCCHHHHHHHHHHH
Confidence 2 23344555554444
No 82
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.45 E-value=9.9e-07 Score=80.19 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=64.3
Q ss_pred CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHHhCCCCCCC
Q 023026 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (288)
Q Consensus 142 ~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~~~~p~ 218 (288)
.||||+++.+.|.+++++|.+..|+.. +.+++++.+.|.+++|+|.. ++..+.|+..|.++|.++|+.+..+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 699999999999999999999888753 45666678999999999998 78999999999999999999876554
No 83
>PRK10824 glutaredoxin-4; Provisional
Probab=98.24 E-value=5.3e-06 Score=68.92 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCCceEEEEe-----CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 131 p~~~LtLY~~-----e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
.++++.+|.. +.||||++++.+|..+|++|..+++..+ ...++.+++..+..+||.+.. +|..+..+.++..
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 4568999987 4899999999999999999999999764 345566778899999998866 6899999888887
Q ss_pred HH
Q 023026 206 YL 207 (288)
Q Consensus 206 YL 207 (288)
..
T Consensus 90 l~ 91 (115)
T PRK10824 90 MY 91 (115)
T ss_pred HH
Confidence 53
No 84
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=1e-05 Score=75.88 Aligned_cols=89 Identities=19% Similarity=0.351 Sum_probs=70.4
Q ss_pred CceEEEEeC-------CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 133 TRLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 133 ~~LtLY~~e-------~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
..+-||.|+ .||||.||..+|...+||||.+++... ....+|++|+++- +|+.+.+|.-|+.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~---------~rSr~G~lPFIEL--NGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK---------RRSRNGTLPFIEL--NGEHIADSDLIED 112 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce---------eeccCCCcceEEe--CCeeccccHHHHH
Confidence 457899987 589999999999999999999876531 2467899999988 7999999999999
Q ss_pred HHHHHhCCCC-CCCCChHHHHHHHhHhH
Q 023026 206 YLFQQYGKGR-SPSTGLLESTLITGWMP 232 (288)
Q Consensus 206 YL~e~Y~~~~-~p~~~~~era~v~~Wl~ 232 (288)
+|.++|+-.. .++.+.+....+.+++.
T Consensus 113 ~L~~hf~~~~~L~~e~~a~s~Al~rm~d 140 (281)
T KOG4244|consen 113 RLRKHFKIPDDLSAEQRAQSRALSRMAD 140 (281)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999998665 44444444455555554
No 85
>PTZ00062 glutaredoxin; Provisional
Probab=97.93 E-value=4.3e-05 Score=69.17 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=61.1
Q ss_pred CCCCceEEEEe-----CCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHH
Q 023026 130 DSPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 204 (288)
Q Consensus 130 ~p~~~LtLY~~-----e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl 204 (288)
...+++.||.. +.||||++++.+|+++||+|+.+++..+ ...++.+++..+...||.+.. +|..|....++.
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~ 186 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGELIGGHDIIK 186 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHH
Confidence 34578999987 5899999999999999999999999865 345666778888999999977 688888877766
Q ss_pred HH
Q 023026 205 NY 206 (288)
Q Consensus 205 ~Y 206 (288)
+.
T Consensus 187 ~l 188 (204)
T PTZ00062 187 EL 188 (204)
T ss_pred HH
Confidence 63
No 86
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.92 E-value=3.8e-05 Score=75.79 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=55.2
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHh--------CCCCcccEEEeCCCCeeecChHHHH
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL--------GGKEQFPFLIDPNTGVSMYESGDIV 204 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~l--------nP~~qVPvLvDpn~G~~L~ES~aIl 204 (288)
+.+++|+.++||+|.+++.+|+++||+|+.++|+++. ...++..++ .+...||+++. +|..+..-.++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHH
Confidence 3699999999999999999999999999999998553 223333333 46789999987 577777777776
Q ss_pred H
Q 023026 205 N 205 (288)
Q Consensus 205 ~ 205 (288)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 87
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0001 Score=60.27 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=63.1
Q ss_pred CCCCceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcC--CHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHH
Q 023026 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (288)
Q Consensus 130 ~p~~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~--~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL 207 (288)
..++++.+|+..+||||.+++.+|...++.+.++++++.... -++.+.++.+..+||.+.. +|..+....+|..+-
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALH 88 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 456789999999999999999999999999999999875322 2344667788889999977 688888888888763
No 88
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.79 E-value=0.00011 Score=63.36 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=55.4
Q ss_pred ceEEEEeC------CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCC----CcccEEEeCCCCeeecChHHH
Q 023026 134 RLQLFEFE------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK----EQFPFLIDPNTGVSMYESGDI 203 (288)
Q Consensus 134 ~LtLY~~e------~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~----~qVPvLvDpn~G~~L~ES~aI 203 (288)
.++||... .||+|.+|+.+|+.++|+|+.++|+.+. ...+.++++.+. ..||.+.. +|..|....+|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~-~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS-GFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 37899988 8999999999999999999999998653 234445555443 78999976 68888888777
Q ss_pred HHH
Q 023026 204 VNY 206 (288)
Q Consensus 204 l~Y 206 (288)
.+.
T Consensus 78 ~~L 80 (147)
T cd03031 78 LRL 80 (147)
T ss_pred HHH
Confidence 764
No 89
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.73 E-value=4.6e-05 Score=62.06 Aligned_cols=45 Identities=16% Similarity=0.423 Sum_probs=36.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln 180 (288)
++||+.+.||+|++++.+|+++||+|+.+++.+... ..+.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~el~~~~ 45 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPP-SKEELKKWL 45 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcc-cHHHHHHHH
Confidence 589999999999999999999999999999976543 343344443
No 90
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.57 E-value=0.00015 Score=61.03 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCC
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~ 169 (288)
|++||+.+.||+|++++.+|+++||+|+.+++.+..
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 589999999999999999999999999999997654
No 91
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.55 E-value=0.00027 Score=51.12 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=43.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecC
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~E 199 (288)
.+++|..++||+|.+++.+|+++ +++|..++++.. ++ +.+..+-..+|+++. +|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~-l~~~~~i~~vPti~i--~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD-LADEYGVMSVPAIVI--NGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh-HHHHcCCcccCEEEE--CCEEEEe
Confidence 47899999999999999999876 577777776532 34 334566778999987 5665553
No 92
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.53 E-value=0.00021 Score=58.39 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCC
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~ 169 (288)
|++||+.+.|++|++++.+|++.||+|+++++.+..
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 589999999999999999999999999999997653
No 93
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.47 E-value=0.00022 Score=56.94 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=36.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln 180 (288)
++||+.+.||+|++++.+|+++||+|+++++.+... ..+.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP-TKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC-CHHHHHHHH
Confidence 589999999999999999999999999999976533 333444443
No 94
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.27 E-value=0.00066 Score=57.22 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=33.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
|+++|+.+.|+.|++++.+|++.||+|+.+++.+...
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~ 37 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSM 37 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcC
Confidence 5899999999999999999999999999999976543
No 95
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.25 E-value=0.00076 Score=56.93 Aligned_cols=37 Identities=14% Similarity=0.390 Sum_probs=33.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
|++||+.+.|+.|++++..|++.||+|+++++.+...
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~ 37 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPL 37 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCC
Confidence 5899999999999999999999999999999976543
No 96
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.21 E-value=0.00053 Score=56.08 Aligned_cols=35 Identities=9% Similarity=0.358 Sum_probs=32.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~ 169 (288)
++||+.+.||+|++++.+|++.||+|+++++.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCCh
Confidence 58999999999999999999999999999997643
No 97
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0021 Score=50.35 Aligned_cols=62 Identities=18% Similarity=0.373 Sum_probs=47.1
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHH-----------HhCCCCcccEEEeCCCCeeec
Q 023026 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVR-----------RLGGKEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk-----------~lnP~~qVPvLvDpn~G~~L~ 198 (288)
+||+...||.|....+.|+.++++|+.++|.....+-.+|+. +.++..-+|+|..+ +|.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 899999999999999999999999999998643332222221 35788889999765 565544
No 98
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.91 E-value=0.0023 Score=51.93 Aligned_cols=36 Identities=11% Similarity=0.336 Sum_probs=32.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
+++|+.+.|+.|++++..|++.|++|+++++.+...
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCC
Confidence 589999999999999999999999999999976543
No 99
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.90 E-value=0.0055 Score=46.78 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHcCCc---eEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHH
Q 023026 142 ACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (288)
Q Consensus 142 ~SPfCrkVr~~L~ElgIp---ye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~ 208 (288)
.+|.|-++..+|...+.+ |+++..... .+.|.+++|+|++ .++..+.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~---------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP---------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC---------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 479999999999999999 888875421 2689999999998 36789999999999983
No 100
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.64 E-value=0.0036 Score=51.56 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=36.1
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ 178 (288)
.++||+.+.|+-|++++.+|++.|++|+++++-+... ..+.++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~-s~~eL~~ 44 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPW-TAETLRP 44 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCC-CHHHHHH
Confidence 3789999999999999999999999999999876543 3333443
No 101
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0059 Score=50.80 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=37.2
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHH
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ 178 (288)
++++||+.+.|.-|++++..|++.||+|+++++-+... .++.+.+
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~-s~~eL~~ 45 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPP-SREELKK 45 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCC-CHHHHHH
Confidence 37999999999999999999999999999999876543 3444443
No 102
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.36 E-value=0.0095 Score=50.10 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=35.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVR 177 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk 177 (288)
.++||+.+.|.-||+++..|++.||+|+++++-+... ..+.++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~-t~~eL~ 44 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPW-HADTLR 44 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCc-CHHHHH
Confidence 5899999999999999999999999999999876543 333343
No 103
>PRK10853 putative reductase; Provisional
Probab=96.33 E-value=0.0061 Score=50.54 Aligned_cols=37 Identities=8% Similarity=0.255 Sum_probs=33.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
|++||+.+.|.-|++++-.|++.|++|+++++-+...
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~ 37 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGL 37 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCc
Confidence 5899999999999999999999999999999876543
No 104
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.32 E-value=0.018 Score=43.44 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=41.6
Q ss_pred ceEEEEeCCChhHHHH----HHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeec
Q 023026 134 RLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkV----r~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ 198 (288)
.+++|. ++||+|..+ ..++++++++++++.++. .+... ..+-..+|+++- +|..++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~a~-~~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNEIL-EAGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHH-HcCCCcCCEEEE--CCEEEE
Confidence 367887 899999999 668888899999988872 22233 356788999987 565444
No 105
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.07 E-value=0.019 Score=37.53 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=39.3
Q ss_pred eEEEEeCCChhHHHHHHHHH-----HcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 135 LQLFEFEACPFCRRVREAIT-----ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~-----ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
|.+|...+|++|++++..+. ..++.+..+++..... ..+.. ...+...+|+++.-
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA-LEKEL-KRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH-HhhHH-HhCCCccccEEEEE
Confidence 46777889999999999999 4577788887765432 11211 35778899998653
No 106
>PRK10026 arsenate reductase; Provisional
Probab=96.03 E-value=0.012 Score=50.59 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=34.3
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
.+++||+.+.|.-||+++..|++.|++|+++++-+...
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~pp 39 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPP 39 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCc
Confidence 36899999999999999999999999999999876543
No 107
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.80 E-value=0.063 Score=42.81 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=50.7
Q ss_pred eEEEEeCCC------hhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC----CCCcccEEEeCCCCeeecChHHHH
Q 023026 135 LQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG----GKEQFPFLIDPNTGVSMYESGDIV 204 (288)
Q Consensus 135 LtLY~~e~S------PfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln----P~~qVPvLvDpn~G~~L~ES~aIl 204 (288)
++||....+ -.|+.|+.+|+.++|+|+.++|..+. ..++++.+.. +...||.+.. +|..+....++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~-~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE-ENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH-HHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 567765433 37889999999999999999998653 4455555554 3589997765 578888887776
Q ss_pred HH
Q 023026 205 NY 206 (288)
Q Consensus 205 ~Y 206 (288)
..
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 63
No 108
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.74 E-value=0.021 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
++||+.+.|.-|++++..|++.|++|+++++-+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~ 36 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPP 36 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCc
Confidence 589999999999999999999999999999876543
No 109
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.62 E-value=0.025 Score=46.28 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=32.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCc
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~ 170 (288)
++||+.+.|+-|++++..|++.|++|+++++-+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPP 36 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence 589999999999999999999999999999876544
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.56 E-value=0.11 Score=38.26 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=36.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHH----cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~E----lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
+++||..++||+|+.+.-.|++ .+..+.+..++.. ..++.. +..+-..+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~-~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKA-MEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHH-HHcCCccCCEEEE
Confidence 4789999999999999988865 3433444444432 233433 3566778999986
No 111
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.24 E-value=0.1 Score=39.90 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=36.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
.++||+.++|+-|..++.+|.+.. +.++.++|.. .++.. +..+ -.||||..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~-~~Y~-~~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELF-EKYG-YRIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHH-HHSC-TSTSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHH-HHhc-CCCCEEEE
Confidence 489999999999999999999753 4456667763 34444 4554 47999987
No 112
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.12 Score=42.49 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCCCceEEEE-----eCCChhHHHHHHHHHHcC-CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHH
Q 023026 130 DSPTRLQLFE-----FEACPFCRRVREAITELD-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDI 203 (288)
Q Consensus 130 ~p~~~LtLY~-----~e~SPfCrkVr~~L~Elg-Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aI 203 (288)
..++++.||. ++.|.|+.++.-+|..+| ++|..++|-.+ ..-|+-+++.+..-++|-|-. +|+-+..|+-|
T Consensus 12 i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv 88 (105)
T COG0278 12 IKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIV 88 (105)
T ss_pred hhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC-HHHHhccHhhcCCCCCceeeE--CCEEeccHHHH
Confidence 4456888886 568999999999999999 78999998655 334555778888999999965 58777766544
Q ss_pred HH
Q 023026 204 VN 205 (288)
Q Consensus 204 l~ 205 (288)
.+
T Consensus 89 ~E 90 (105)
T COG0278 89 RE 90 (105)
T ss_pred HH
Confidence 43
No 113
>PHA02125 thioredoxin-like protein
Probab=94.65 E-value=0.13 Score=38.53 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=38.8
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
|+.+|+.++|+.|+.+...|++. ++++.+|+.+. .++.. +..+-..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~--~~~l~-~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDE--GVELT-AKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCC--CHHHH-HHcCCceeCeEEC
Confidence 57899999999999999999754 56666666432 34543 4566778999985
No 114
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.51 E-value=0.12 Score=40.49 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=42.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeec
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ 198 (288)
.+.+|..++||+|..+..++.++ +|.++.++++. .++.. +..+-..+|.++- +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~----~~e~a-~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL----FQDEV-EERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh----CHHHH-HHcCCccCCEEEE--CCEEEE
Confidence 47888889999999998888765 57788888763 23433 3556778999986 565544
No 115
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.90 E-value=0.25 Score=41.20 Aligned_cols=69 Identities=20% Similarity=0.456 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCC-CCcccEEEeCCCC------------eeecChHHH
Q 023026 142 ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTG------------VSMYESGDI 203 (288)
Q Consensus 142 ~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP-~~qVPvLvDpn~G------------~~L~ES~aI 203 (288)
.||.|..+.=+|.-. .++++.++..+ + ..+.+..++. +...|+||-+++. ..|.+...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R--P-R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR--P-RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC--c-hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 499999998888753 45555555443 2 2233433444 5679999864221 268899999
Q ss_pred HHHHHHHhCC
Q 023026 204 VNYLFQQYGK 213 (288)
Q Consensus 204 l~YL~e~Y~~ 213 (288)
+.||.++||-
T Consensus 100 ~~~La~r~g~ 109 (112)
T PF11287_consen 100 LRYLAERHGF 109 (112)
T ss_pred HHHHHHHcCC
Confidence 9999999984
No 116
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.39 E-value=0.18 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.2
Q ss_pred EEeCCChhHHHHHHHHHHcCCceEEEEcCCCC
Q 023026 138 FEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (288)
Q Consensus 138 Y~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~ 169 (288)
|+.+.|.-|++++.+|++.||+|+++++-+..
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 88899999999999999999999999987653
No 117
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.06 E-value=0.77 Score=34.47 Aligned_cols=58 Identities=24% Similarity=0.538 Sum_probs=38.5
Q ss_pred ceEEEEeCCChhHHHHHH----HHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecCh
Q 023026 134 RLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES 200 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~----~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES 200 (288)
.+++| .++||+|.++.. ++.++|+.++.+++. + .++ + +..+-..+|+|+- +|...+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~-~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEE-I-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHH-H-HHTT-SSSSEEEE--TTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHH-H-HHcCCCCCCEEEE--CCEEEEEe
Confidence 35675 456999997665 556678888888862 1 233 4 3577889999987 57655543
No 118
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.27 E-value=1.7 Score=35.81 Aligned_cols=63 Identities=14% Similarity=0.334 Sum_probs=38.1
Q ss_pred CceEEEEeCCChhHHHHHHHHHH----cCCceEEEEcCCCC---cC----CHHHHHHhC---CCCcccEEEeCCCCe
Q 023026 133 TRLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGS---IR----HREMVRRLG---GKEQFPFLIDPNTGV 195 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~E----lgIpye~~~V~kg~---~~----~~efLk~ln---P~~qVPvLvDpn~G~ 195 (288)
.-+..|+.++||+|+.+.-.|++ .++++-.++++... .. -.++..+.+ +-..+|.++.=.+|.
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 34677789999999998766654 45777777776432 11 124433222 234599886434563
No 119
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=1.1 Score=41.52 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=56.5
Q ss_pred CCCceEEEE-----eCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHH
Q 023026 131 SPTRLQLFE-----FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (288)
Q Consensus 131 p~~~LtLY~-----~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~ 205 (288)
-.+++.||. ++.|.|++.+.-.|.+.|++|...+|-.++ .-|+-+|+.+-.-++|-|-- +|+-+..+ +|+.
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFiGGl-DIl~ 212 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFIGGL-DILK 212 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEeccCc-HHHH
Confidence 456788886 468999999999999999999999997653 35666888888999999965 57656554 4444
Q ss_pred HH
Q 023026 206 YL 207 (288)
Q Consensus 206 YL 207 (288)
-+
T Consensus 213 ~m 214 (227)
T KOG0911|consen 213 EM 214 (227)
T ss_pred HH
Confidence 33
No 120
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=1.6 Score=41.83 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=52.0
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCc----eEEE-E-cCCCCcC--------------------------CHHHHHH--
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVF-P-CPKGSIR--------------------------HREMVRR-- 178 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIp----ye~~-~-V~kg~~~--------------------------~~efLk~-- 178 (288)
..+.||.--.||+..+..+++..+|++ +.++ . .+..+|. -+++...
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 679999988999999999999999865 3332 2 1111111 1122211
Q ss_pred --hCCCCcccEEEeCCCCe-eecChHHHHHHHHHHh
Q 023026 179 --LGGKEQFPFLIDPNTGV-SMYESGDIVNYLFQQY 211 (288)
Q Consensus 179 --lnP~~qVPvLvDpn~G~-~L~ES~aIl~YL~e~Y 211 (288)
..+.-+||+|-|-.+.. +=-||.+||+.+...|
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f 151 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAF 151 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhh
Confidence 13467899999854443 4459999999998444
No 121
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.24 E-value=6 Score=29.62 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=44.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee------ecChHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS------MYESGDI 203 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~------L~ES~aI 203 (288)
-+..|..++|+.|+...-.+.++ +-++.+..++.. ..++..+ ...-..+|.++--.+|.. ..+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~-~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCK-KYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHH-HTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhh-ccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 35556778999999998777553 213444444332 2355554 455788998843224532 2355678
Q ss_pred HHHHHHH
Q 023026 204 VNYLFQQ 210 (288)
Q Consensus 204 l~YL~e~ 210 (288)
..+|.++
T Consensus 97 ~~~i~~~ 103 (103)
T PF00085_consen 97 IEFIEKH 103 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8887763
No 122
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=88.09 E-value=2.2 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHH-----cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~E-----lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+.+|+.++|+.|+.+...+.+ .++.+-.++++. .+++.. ..+...+|+++
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~-~~~v~~~P~~~ 68 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE----NPELAE-EYGVRSIPTFL 68 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC----ChhHHH-hcCcccccEEE
Confidence 3666777899999999998887 567777777654 234443 44566799864
No 123
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=87.45 E-value=0.56 Score=37.89 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=35.5
Q ss_pred ceEEE-EeCCChhHHHHHHHHHHcC-----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLF-EFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY-~~e~SPfCrkVr~~L~Elg-----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
.+.+| +.++||+|+.++.+|+++. +.+..+++++ .++. .+..+-..+|.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l-~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEK-AEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHH-HHHcCCCcCCEEEE
Confidence 45555 5689999999998888653 4455555553 3454 34667888998854
No 124
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=3.2 Score=40.09 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=53.4
Q ss_pred CCceEEEEeCCChhHHHHHHHHHHcCCc----eEEEE--cCCCCc--------------CCHHHHHH--------hCCCC
Q 023026 132 PTRLQLFEFEACPFCRRVREAITELDLS----VEVFP--CPKGSI--------------RHREMVRR--------LGGKE 183 (288)
Q Consensus 132 ~~~LtLY~~e~SPfCrkVr~~L~ElgIp----ye~~~--V~kg~~--------------~~~efLk~--------lnP~~ 183 (288)
.....||..-+||+..+..++=..+|++ +.++. .+..++ ..-++|.+ ..+..
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 3579999999999999998888878765 33321 111111 01112221 25678
Q ss_pred cccEEEeCCCCee-ecChHHHHHHHHHHhC
Q 023026 184 QFPFLIDPNTGVS-MYESGDIVNYLFQQYG 212 (288)
Q Consensus 184 qVPvLvDpn~G~~-L~ES~aIl~YL~e~Y~ 212 (288)
+||+|.|..+.++ =-||.+|+.-|...|.
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFd 158 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFD 158 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHH
Confidence 9999999655544 4599999999887664
No 125
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=84.53 E-value=5.3 Score=30.67 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=35.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
-+.+|..++|+.|+.....++++ ++.+..++++. .++... ...-..+|+++--++|..
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~~-~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIAE-AAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHHH-HCCCeeccEEEEEECCeE
Confidence 46677779999999998888662 24444445432 345443 344578997743224543
No 126
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.48 E-value=2.3 Score=39.47 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=51.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~ 210 (288)
.+-|+.+ .-|..|..+|...++||.++..+.. +| +.|.|+||.|.. +...+.|-..|+.+...+
T Consensus 28 QiLl~d~---ascLAVqtfLrMcnLPf~v~~~~Na-----ef---mSP~G~vPllr~--g~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 28 QILLPDN---ASCLAVQTFLRMCNLPFNVRQRANA-----EF---MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAK 91 (257)
T ss_pred ccccccc---hhHHHHHHHHHHcCCCceeeecCCc-----cc---cCCCCCCceeee--cchhhhhhhHHHHHHHHh
Confidence 3445554 4689999999999999999876533 33 689999999987 457788999999999886
No 127
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=83.22 E-value=0.59 Score=39.55 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=16.2
Q ss_pred CCCCcccEEEeCCCCeeecChHHHHHHHHHHhCC
Q 023026 180 GGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (288)
Q Consensus 180 nP~~qVPvLvDpn~G~~L~ES~aIl~YL~e~Y~~ 213 (288)
+....-|-|+|..+|+.++|..||++||..-|-.
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 4444558887777899999999999999887753
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.08 E-value=2.6 Score=42.61 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=47.0
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecCh----HHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES----GDIV 204 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES----~aIl 204 (288)
.+++|..+.||||..|+.++.++ +|..+.++. ...+++.. ...-..||.++. +|..+++. .+++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~~-~~~v~~VP~~~i--~~~~~~~g~~~~~~~~ 192 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEVE-ALGIQGVPAVFL--NGEEFHNGRMDLAELL 192 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHHH-hcCCcccCEEEE--CCcEEEecCCCHHHHH
Confidence 58899999999999998888765 355555442 34566654 455668999976 35445542 4566
Q ss_pred HHHHHH
Q 023026 205 NYLFQQ 210 (288)
Q Consensus 205 ~YL~e~ 210 (288)
+.|.+.
T Consensus 193 ~~l~~~ 198 (515)
T TIGR03140 193 EKLEET 198 (515)
T ss_pred HHHhhc
Confidence 666554
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=82.85 E-value=2.3 Score=37.92 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=37.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC-----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg-----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
.+++|..++||+|..+..+++++- |.+..++++. .++.. +..+-..+|.++-..+|.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~----~~~~~-~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE----NPDLA-EKYGVMSVPKIVINKGVE 197 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC----CHHHH-HHhCCccCCEEEEecCCE
Confidence 467788899999999998887652 4444344332 34543 456677899886533443
No 130
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=82.59 E-value=5.7 Score=32.24 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=37.8
Q ss_pred ceEEEEeCCCh------hHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhC---------CCCcccEEEeCCCCeeec
Q 023026 134 RLQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG---------GKEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 134 ~LtLY~~e~SP------fCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~ln---------P~~qVPvLvDpn~G~~L~ 198 (288)
.|++|....+. .+++|..+|+-++|+|+.++|..+ ...++++++.. +..-.|.+.. ++.-+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEe
Confidence 47788754332 678899999999999999999874 44566666544 2334467664 465444
Q ss_pred C
Q 023026 199 E 199 (288)
Q Consensus 199 E 199 (288)
+
T Consensus 79 d 79 (99)
T PF04908_consen 79 D 79 (99)
T ss_dssp E
T ss_pred e
Confidence 4
No 131
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=82.13 E-value=6.9 Score=31.33 Aligned_cols=20 Identities=30% Similarity=0.860 Sum_probs=15.2
Q ss_pred CceEEEEeCCChhHHHHHHH
Q 023026 133 TRLQLFEFEACPFCRRVREA 152 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~ 152 (288)
..+..|+.++|++|++....
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~ 35 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRD 35 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHH
Confidence 35666778899999987643
No 132
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.96 E-value=3.3 Score=41.83 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=49.3
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecC----hHHH
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDI 203 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~E----S~aI 203 (288)
-.+++|..+.||||..|+.++.++ +|..+.++. ...++... ...-..||.++. +|..+++ -.+|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~-~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 190 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVE-ARNIMAVPTVFL--NGEEFGQGRMTLEEI 190 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHH-hcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 358899999999999998877665 455555543 34566654 556779999976 4544444 3467
Q ss_pred HHHHHHHhC
Q 023026 204 VNYLFQQYG 212 (288)
Q Consensus 204 l~YL~e~Y~ 212 (288)
++.|.+..+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 777766543
No 133
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.44 E-value=18 Score=35.25 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecChHHHHHHHHH
Q 023026 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 142 ~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~aIl~YL~e 209 (288)
.|+-|..|.+.+.-.+-+.+++.... ++ ..|.+++|+|++. +|..+..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-----~~----~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-----PW----RSPSGKLPYLITD-NGTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-----CC----CCCCCCCCeEEec-CCceeccHHHHHHHHHH
Confidence 58999999999999885555544332 11 4678899999985 67889999999999988
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=81.21 E-value=5 Score=32.70 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=34.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHH------cCCceEEEEcCCCCcCCHHHHHHhCCCC-cccEEE--eCCCCee
Q 023026 134 RLQLFEFEACPFCRRVREAITE------LDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLI--DPNTGVS 196 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~E------lgIpye~~~V~kg~~~~~efLk~lnP~~-qVPvLv--Dpn~G~~ 196 (288)
-|..|+.++|++|+...-.+.+ .+..|..++++.......+ +.+..+ .+|.++ ++ +|..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~-~Gk~ 89 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDP-SGDV 89 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECC-CCCC
Confidence 3455677899999999766655 2345666677654321112 233333 499774 44 5653
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.11 E-value=3.7 Score=41.97 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=41.6
Q ss_pred ceEEEEeCCChhHHHHHHHH----HHc-CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecC
Q 023026 134 RLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L----~El-gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~E 199 (288)
.+++|..++||+|..+..++ .++ +|.++.+++.. .++.. +..+-..||.++. +|..+++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~-~~~~v~~vP~~~i--~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLK-DEYGIMSVPAIVV--DDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHH-HhCCceecCEEEE--CCEEEEe
Confidence 47888889999998887654 455 68888888753 35544 3566778999987 4544443
No 136
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=80.54 E-value=3.4 Score=31.94 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=32.0
Q ss_pred ceEEEEeCCChhHHHHHHHH------H-Hc--CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAI------T-EL--DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L------~-El--gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.+..|+.++|++|+.....+ . +. ++.+-.++++......+++. +..+-..+|+++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL-KRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH-HHcCCCCCCEEE
Confidence 46677889999999886433 1 11 34444445544322234544 445567799774
No 137
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=77.05 E-value=19 Score=26.66 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=30.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
+..|..++|+.|+.+...+.++ + +.+-.++++. .++... ..+-..+|.++
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~-~~~v~~~P~~~ 73 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE----NPDIAA-KYGIRSIPTLL 73 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC----CHHHHH-HcCCCcCCEEE
Confidence 4445567899999997776553 2 3444444442 334443 44566799774
No 138
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=77.01 E-value=2.9 Score=33.80 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=36.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeec
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~ 198 (288)
-+..|..++|+.|+.+...|+++ ++.+-.+++++ .++.. +..+-..+|+++-=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~l~-~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APFLV-EKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHHHH-HHCCCccCCEEEEEECCEEEE
Confidence 35556668999999998888664 34444444432 33433 455677899885323565444
No 139
>PTZ00051 thioredoxin; Provisional
Probab=76.47 E-value=14 Score=27.80 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
-+..|..++|+.|+.+...+..+ ++.+-.++++. .++... ..+-..+|+++--.+|.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~~-~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVAE-KENITSMPTFKVFKNGS 82 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHHH-HCCCceeeEEEEEeCCe
Confidence 35566778999999998777663 44444455442 344443 44567899774323553
No 140
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=75.45 E-value=11 Score=31.40 Aligned_cols=65 Identities=11% Similarity=0.317 Sum_probs=37.0
Q ss_pred eEEEEeCCChhHHHHH-------HHHHHcCCceEEEEcCCCCcC-C-H---HHHHHhCCCCcccEE--EeCCCCeeecCh
Q 023026 135 LQLFEFEACPFCRRVR-------EAITELDLSVEVFPCPKGSIR-H-R---EMVRRLGGKEQFPFL--IDPNTGVSMYES 200 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr-------~~L~ElgIpye~~~V~kg~~~-~-~---efLk~lnP~~qVPvL--vDpn~G~~L~ES 200 (288)
+..++..+|++|++.. .+...++=.|..+.++..... . . +.+..+++..-+|++ +++ +|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~-~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP-DLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC-CCCEEeee
Confidence 3335677999999874 233333445777666643211 1 1 111123456679977 455 68778776
No 141
>PHA02278 thioredoxin-like protein
Probab=75.37 E-value=15 Score=29.43 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=36.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee
Q 023026 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L 197 (288)
+.-|..++|+.|+...-.++++ + +++..++++......++.. +...-..+|+++-=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHH-HHCCCccccEEEEEECCEEE
Confidence 4445668999999888666553 2 3455566665322234433 44556779988532356544
No 142
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=74.71 E-value=6.6 Score=35.98 Aligned_cols=38 Identities=16% Similarity=0.552 Sum_probs=26.7
Q ss_pred CCCCceEEEEeCCChhHHHHHHHHHHc---CCceEEEEcCC
Q 023026 130 DSPTRLQLFEFEACPFCRRVREAITEL---DLSVEVFPCPK 167 (288)
Q Consensus 130 ~p~~~LtLY~~e~SPfCrkVr~~L~El---gIpye~~~V~k 167 (288)
.+...+.+|..+.||||++...-+.++ ||.+.+..++.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 344568888888999999998888774 45555544443
No 143
>PRK09381 trxA thioredoxin; Provisional
Probab=74.38 E-value=28 Score=26.88 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=32.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
+..|..++||.|+...-.++++ + +.+-.++++. .+.... ..+-..+|.++--++|..
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~-~~~v~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAP-KYGIRGIPTLLLFKNGEV 87 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHH-hCCCCcCCEEEEEeCCeE
Confidence 4445667999999887666542 2 3333344443 233333 345678997743225643
No 144
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=73.11 E-value=38 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEEEeCCChhHHHHHHHH----HHcCCceEEEEcC
Q 023026 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFPCP 166 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L----~ElgIpye~~~V~ 166 (288)
+..|.-.+||+|++..-.| ++.|+.+..+.++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 6666668999999985444 4457666556655
No 145
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=72.65 E-value=15 Score=28.86 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=33.0
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc-------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El-------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.-+..|..++||.|+...-.+.++ ++.+-.++++.. ...+..+..+-..+|.++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 356777888999999887666543 233444555541 123333345677899774
No 146
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=72.31 E-value=8.6 Score=33.62 Aligned_cols=37 Identities=24% Similarity=0.688 Sum_probs=27.2
Q ss_pred CCCceEEEEeCCChhHHHHHHHHHH--cCCceEEEEcCC
Q 023026 131 SPTRLQLFEFEACPFCRRVREAITE--LDLSVEVFPCPK 167 (288)
Q Consensus 131 p~~~LtLY~~e~SPfCrkVr~~L~E--lgIpye~~~V~k 167 (288)
.+..+.+|..+.||||++....+.+ .++.+.++.++.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 3456788888899999999998875 355555555554
No 147
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=71.63 E-value=10 Score=35.21 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCChhHHHHHHHHHH---cC-CceEEEEcC
Q 023026 131 SPTRLQLFEFEACPFCRRVREAITE---LD-LSVEVFPCP 166 (288)
Q Consensus 131 p~~~LtLY~~e~SPfCrkVr~~L~E---lg-Ipye~~~V~ 166 (288)
.+..+.+|..+.||||++....+.+ .| |.+.+++++
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~ 156 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVG 156 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEecc
Confidence 3345777888899999999877654 23 555555543
No 148
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=71.43 E-value=23 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=31.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHc------------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREAITEL------------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El------------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
+..|..++|++|+.....++++ .+.+-.++++. .++.. +..+-..+|.++
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----~~~l~-~~~~v~~~Ptl~ 83 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----ESDIA-DRYRINKYPTLK 83 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----CHHHH-HhCCCCcCCEEE
Confidence 5566778999999987666532 13344455543 24444 445667899885
No 149
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=70.84 E-value=16 Score=32.52 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=46.2
Q ss_pred CceEEEEe---CCChhHHHHHHHHHHcC-----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee----cC-
Q 023026 133 TRLQLFEF---EACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM----YE- 199 (288)
Q Consensus 133 ~~LtLY~~---e~SPfCrkVr~~L~Elg-----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L----~E- 199 (288)
..+.+|.. +|||.|+.+.-+++++. +.+..++++.+ ..++.. +..+-..+|.++-=++|..+ .+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~~~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--EDKEEA-EKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--ccHHHH-HHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 35777877 89999999998887762 34445566533 244533 45668889988542244222 12
Q ss_pred --hHHHHHHHHHHh
Q 023026 200 --SGDIVNYLFQQY 211 (288)
Q Consensus 200 --S~aIl~YL~e~Y 211 (288)
-..+..+|...+
T Consensus 98 ~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 98 PAGYEFAALIEDIV 111 (215)
T ss_pred CCHHHHHHHHHHHH
Confidence 234556666554
No 150
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=70.55 E-value=5.4 Score=30.96 Aligned_cols=24 Identities=17% Similarity=0.585 Sum_probs=16.5
Q ss_pred CCceEEEEeCCChhHHHHHHHHHH
Q 023026 132 PTRLQLFEFEACPFCRRVREAITE 155 (288)
Q Consensus 132 ~~~LtLY~~e~SPfCrkVr~~L~E 155 (288)
...+.+|..++||+|+++...+.+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 345677788999999999776653
No 151
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=70.06 E-value=24 Score=26.52 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=33.6
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc----C----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El----g----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
.-+.+|.-++|+.|+.....+.++ . +.+-.++++.. ..+++.. ..+-..+|.++.-.+|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~-~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKE-EYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHH-hCCCccccEEEEEeCCC
Confidence 346667778999999886444322 2 23333455432 2455544 34556799874322453
No 152
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=69.90 E-value=52 Score=27.54 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=40.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE--eCCCCeeec------Ch
Q 023026 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI--DPNTGVSMY------ES 200 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv--Dpn~G~~L~------ES 200 (288)
+..|..++|+.|+...-.+.++ + +.+..++++.. ...+.+. ..+-..+|.++ ++ +|..+. .-
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~-~~~V~~iPt~v~~~~-~G~~v~~~~G~~~~ 99 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEID-RYRVDGIPHFVFLDR-EGNEEGQSIGLQPK 99 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHH-HcCCCCCCEEEEECC-CCCEEEEEeCCCCH
Confidence 4445667999999888777653 2 33444455432 2334443 45566799663 43 464332 23
Q ss_pred HHHHHHHHHHhC
Q 023026 201 GDIVNYLFQQYG 212 (288)
Q Consensus 201 ~aIl~YL~e~Y~ 212 (288)
.+|...|.+...
T Consensus 100 ~~l~~~l~~l~~ 111 (142)
T cd02950 100 QVLAQNLDALVA 111 (142)
T ss_pred HHHHHHHHHHHc
Confidence 445555555544
No 153
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=69.35 E-value=6.8 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=35.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 135 LQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
+..|..++|+.|+++...|+++ ...+.+..++.. ..++..++ .+-..+|+++-=++|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~-~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEK-FEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHh-cCCccccEEEEEECCEE
Confidence 4556778999999998877763 334555555533 24454443 44567997743225643
No 154
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=68.15 E-value=36 Score=26.94 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=32.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
-+..|..++|+.|+...-.++++ ++.+-.++++. .++.. +..+-..+|.++--++|.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~-~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLA-RKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHH-HHcCCccCCEEEEEECCE
Confidence 35556778999998776554332 34444445543 23433 345568899875222453
No 155
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=67.44 E-value=27 Score=30.06 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=16.2
Q ss_pred CceEE-EEeCCChhHHHHHHHHHH
Q 023026 133 TRLQL-FEFEACPFCRRVREAITE 155 (288)
Q Consensus 133 ~~LtL-Y~~e~SPfCrkVr~~L~E 155 (288)
+.+.| |...+||.|++..-.|.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHH
Confidence 34444 345689999998877765
No 156
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=66.36 E-value=8.6 Score=27.94 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=24.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCCC
Q 023026 135 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKG 168 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~kg 168 (288)
+.+|....||+|+.....+.+. ++.++.+++...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4577777999999998888774 355666665543
No 157
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=65.26 E-value=29 Score=28.79 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHH----cC--CceEEEEcCCCC-c--CCHHHHHHhCCCC-cccEEEeCCCCeeecCh
Q 023026 141 EACPFCRRVREAITE----LD--LSVEVFPCPKGS-I--RHREMVRRLGGKE-QFPFLIDPNTGVSMYES 200 (288)
Q Consensus 141 e~SPfCrkVr~~L~E----lg--Ipye~~~V~kg~-~--~~~efLk~lnP~~-qVPvLvDpn~G~~L~ES 200 (288)
+|||.|+.+.-.+++ .. +.+-.+++++.. + ...++.. ...-. .+|+++--.+|..|-|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~-~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT-DPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh-ccCcccCCCEEEEEcCCceecch
Confidence 699999977655543 33 444445554321 1 1234332 22223 69988543355555443
No 158
>PHA03075 glutaredoxin-like protein; Provisional
Probab=64.03 E-value=8.8 Score=32.51 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.8
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcC
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCP 166 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~ 166 (288)
+.|.|++.+.|+-|..+..+|.++.=+|++..|.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 4689999999999999999999999999987664
No 159
>PRK10996 thioredoxin 2; Provisional
Probab=63.92 E-value=59 Score=27.01 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=34.5
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
-+..|+.++|+.|+...-.+.+. +-.+.+..++.+ ..+++.+ ..+-..+|.++.-.+|.
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~-~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSA-RFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHH-hcCCCccCEEEEEECCE
Confidence 35566778999999876555542 333444444432 2345443 45567899874322564
No 160
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=63.92 E-value=78 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.592 Sum_probs=22.3
Q ss_pred eEEEEeCCChhHHHHHHHHHH----cCCceEEEEcCC
Q 023026 135 LQLFEFEACPFCRRVREAITE----LDLSVEVFPCPK 167 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~E----lgIpye~~~V~k 167 (288)
+..|...+||+|++-.-.|.+ .++.+..++++.
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 555666799999988766654 355555555553
No 161
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=63.79 E-value=21 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.3
Q ss_pred CceEEE-EeCCChhHHH-------HHHHHHHcCCceEEEEcCCCC
Q 023026 133 TRLQLF-EFEACPFCRR-------VREAITELDLSVEVFPCPKGS 169 (288)
Q Consensus 133 ~~LtLY-~~e~SPfCrk-------Vr~~L~ElgIpye~~~V~kg~ 169 (288)
+-+.|| +..+||.||- +...+.+.+-+++++.|..+.
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 345665 5669999974 456666677889999887653
No 162
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=62.54 E-value=56 Score=28.26 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=47.8
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcc-c--EEEeCCCCeeecChHHHHHHHHH
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQF-P--FLIDPNTGVSMYESGDIVNYLFQ 209 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qV-P--vLvDpn~G~~L~ES~aIl~YL~e 209 (288)
..+.+|. ..||+|-...-+|.+++-.-.++..+..++.....++ ..|...- + ++.+ .+|....+|.|+++-+..
T Consensus 9 ~~vvlyD-G~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~-~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 9 DLVVLYD-GVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLE-AAGLDPEDVDSVLLV-EAGQLLVGSDAAIRILRL 85 (137)
T ss_pred CEEEEEC-CcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHh-hcCCChhhhheeeEe-cCCceEeccHHHHHHHHH
Confidence 3455555 4699999999999999877666555433333344443 3332211 1 2222 268899999999998877
Q ss_pred H
Q 023026 210 Q 210 (288)
Q Consensus 210 ~ 210 (288)
.
T Consensus 86 L 86 (137)
T COG3011 86 L 86 (137)
T ss_pred C
Confidence 5
No 163
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=62.40 E-value=31 Score=27.20 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=38.4
Q ss_pred EeCCChhHHHHHHHHHHcCC--ceEEEEcCCCCcCCHHHHHHh-----CCCCcccEEEeCCCCe-eecChHHHHHHHHH
Q 023026 139 EFEACPFCRRVREAITELDL--SVEVFPCPKGSIRHREMVRRL-----GGKEQFPFLIDPNTGV-SMYESGDIVNYLFQ 209 (288)
Q Consensus 139 ~~e~SPfCrkVr~~L~ElgI--pye~~~V~kg~~~~~efLk~l-----nP~~qVPvLvDpn~G~-~L~ES~aIl~YL~e 209 (288)
....||+|......+..++. .++++++... ...+.+... .-...+ .+++ +|. ...++.|++.-+..
T Consensus 3 YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~--~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE--PDQALLASYGISPEDADSRL-HLID--DGERVYRGSDAVLRLLRR 76 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh--hhhhHHHhcCcCHHHHcCee-EEec--CCCEEEEcHHHHHHHHHH
Confidence 34579999999999999875 4666666221 111111111 112222 3333 454 88899998887655
No 164
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=62.02 E-value=7.7 Score=29.05 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=30.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC--------CceEEEEcCCCCcCCHHHHHHhCCCCcccEE
Q 023026 134 RLQLFEFEACPFCRRVREAITELD--------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg--------Ipye~~~V~kg~~~~~efLk~lnP~~qVPvL 188 (288)
.+.+|..++|+.|+.....+++.. +.+-.+++++ .++.. +..+-..+|.+
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~-~~~~i~~~P~~ 73 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA----EKDLA-SRFGVSGFPTI 73 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc----hHHHH-HhCCCCcCCEE
Confidence 477788889999998766664431 2233334432 34444 34556789977
No 165
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=62.01 E-value=19 Score=29.32 Aligned_cols=47 Identities=30% Similarity=0.503 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHHc-------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 142 ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 142 ~SPfCrkVr~~L~El-------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
+||.|++-...|.++ |+.+..+..+.... ..+++++ -...+|++.|+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~--~~~~~~~~~D~ 93 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK--YGINFPVLSDP 93 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH--TTTTSEEEEET
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh--hCCCceEEech
Confidence 799999887555543 45555555544322 4556554 23468888884
No 166
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=61.78 E-value=39 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=33.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 135 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
+..|..++|+.|+...-.|+++ ++.+-.++++... ..+++. +...-..+|.++--.+|..
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~-~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELC-RREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHH-HHcCCCcCCEEEEEeCCeE
Confidence 4445668999999887766653 3444444544321 123444 3445667997743225643
No 167
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=61.23 E-value=63 Score=26.83 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=12.7
Q ss_pred eEEEEeCCChhHHHHHHHH
Q 023026 135 LQLFEFEACPFCRRVREAI 153 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L 153 (288)
+..|...+||.|+...-.|
T Consensus 65 ~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEECCcCHHHHHHHHHH
Confidence 3444567999998865444
No 168
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=59.72 E-value=38 Score=25.87 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=30.7
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC------CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg------Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+..|..++|+.|+...-.++++- +.+-.++++. .++.. +..+-..+|.++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLC-QQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHH-HHcCCCcccEEE
Confidence 355566789999998876665432 3333445543 33433 345567899774
No 169
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=59.56 E-value=18 Score=29.98 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=31.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCc----eEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIp----ye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
+.-|+-+||+.|+.+.-+|+++--. ..+..|+.+ ..++.. +..+-..+|.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD--~~~~la-~~~~V~~iPTf~ 73 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID--EVPDFN-KMYELYDPPTVM 73 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC--CCHHHH-HHcCCCCCCEEE
Confidence 3446778999999988877665322 233333332 234543 455667799884
No 170
>PF13728 TraF: F plasmid transfer operon protein
Probab=59.32 E-value=51 Score=29.93 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=38.7
Q ss_pred ceEEEEeCCChhHHHHH----HHHHHcCCceEEEEcCCCC-------cCCHHHHHHhCCCCcccEE--EeCCCC
Q 023026 134 RLQLFEFEACPFCRRVR----EAITELDLSVEVFPCPKGS-------IRHREMVRRLGGKEQFPFL--IDPNTG 194 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr----~~L~ElgIpye~~~V~kg~-------~~~~efLk~lnP~~qVPvL--vDpn~G 194 (288)
.|.++.-..||+|..-. .+..+.|+++..+.++... ....+..++++ -..+|+| ++++++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFLVNPNTK 195 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEEEECCCC
Confidence 46677777899997654 4555678998888876321 12344444455 4689976 677554
No 171
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=59.07 E-value=14 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=24.1
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCC
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPK 167 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~k 167 (288)
..|++|....||+|++....+..+ ++.+.+++++.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~ 46 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPI 46 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCc
Confidence 356777777999999998776653 25566666543
No 172
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=58.30 E-value=32 Score=27.51 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=12.5
Q ss_pred EEEeCCChhHHHHHHHHH
Q 023026 137 LFEFEACPFCRRVREAIT 154 (288)
Q Consensus 137 LY~~e~SPfCrkVr~~L~ 154 (288)
.+...+||.|++..-.|.
T Consensus 24 ~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 24 YFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEECCCChHHHHHhHHHH
Confidence 344579999998765554
No 173
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=57.75 E-value=36 Score=26.91 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=33.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee
Q 023026 135 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L 197 (288)
+..|..++|+.|+.+.-.++++ ++.+-.+++++. + +.+...-..+|.++-=.+|..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~-l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----F-LVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----H-HHHhcCCCcCCEEEEEECCEEE
Confidence 4456678999999988777654 344333444321 3 3344556789988532256443
No 174
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=57.60 E-value=31 Score=26.36 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=30.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC------CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg------Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+..|..++|+.|+...-.++++. +.+-.++|++ .++..+ ...-..+|.++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~-~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCR-SQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHH-HcCCCccCEEE
Confidence 355566789999998876665432 2233345543 244443 34457889773
No 175
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=56.23 E-value=51 Score=25.13 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=31.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.+..|..++|+.|+...-.++++ + +.+-.++++.+ ..++... ..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~-~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCG-KYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHH-HcCCCcCCEEE
Confidence 46667778999999886555543 2 33333455542 2345443 44567799774
No 176
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=56.10 E-value=16 Score=26.66 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=32.8
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.-+.+|.-++|++|+.....+.+. +-.+.+..++.. ...++.+ ..+-..+|.++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--ANNDLCS-EYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--chHHHHH-hCCCCCCCEEE
Confidence 456777778999999987776552 223444444322 1344443 44567799773
No 177
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=54.44 E-value=54 Score=30.78 Aligned_cols=59 Identities=17% Similarity=0.354 Sum_probs=34.3
Q ss_pred eEEEEeCCChhHHHHHHHHH----HcCCceEEEEcCCCCc-------CCHHHHHHhCCCCcccEE--EeCCCC
Q 023026 135 LQLFEFEACPFCRRVREAIT----ELDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTG 194 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~----ElgIpye~~~V~kg~~-------~~~efLk~lnP~~qVPvL--vDpn~G 194 (288)
|..|.-.+||+|+...-.|. +.|+.+..+.++.... ...... +..+-..+|.+ +|+++|
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCCC
Confidence 44455578999998765554 3466666666654211 123333 33456779976 665445
No 178
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=38 Score=32.54 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=52.6
Q ss_pred CCCCCceEEEEeCC------ChhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCC----CCcccEEEeCCCCeeec
Q 023026 129 SDSPTRLQLFEFEA------CPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 129 ~~p~~~LtLY~~e~------SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP----~~qVPvLvDpn~G~~L~ 198 (288)
|..+..+++|.... =-.|..||.+|+-.++.|+.++|..+.. .++.|+.+-+ ...+|.+.. +|.-|.
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~-fr~EL~~~lg~~~~~~~LPrVFV--~GryIG 203 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE-FREELQELLGEDEKAVSLPRVFV--KGRYIG 203 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH-HHHHHHHHHhcccccCccCeEEE--ccEEec
Confidence 56777899997531 1378999999999999999999987643 3444544332 456786644 577777
Q ss_pred ChHHHHHH
Q 023026 199 ESGDIVNY 206 (288)
Q Consensus 199 ES~aIl~Y 206 (288)
....|+.-
T Consensus 204 gaeeV~~L 211 (281)
T KOG2824|consen 204 GAEEVVRL 211 (281)
T ss_pred cHHHhhhh
Confidence 77766654
No 179
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=54.29 E-value=42 Score=25.45 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=31.0
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.+..|..++|+.|+...-.++++ + +.+-.++++. .++.. +...-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLS-GRFFVTALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHH-HHcCCcccCEEE
Confidence 46667778999999887666543 2 3333344432 23433 344567789775
No 180
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=53.85 E-value=26 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=31.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHc----C-CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 135 LQLFEFEACPFCRRVREAITEL----D-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El----g-Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
+..|..++|+.|+.....+.+. + -.+.+..++.+ .++.. +...-..+|+++--.+|.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~-~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTL-KRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHH-HHcCCCcCcEEEEEECCE
Confidence 4556778999999887666543 2 11233333322 23434 345577889763222564
No 181
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=52.71 E-value=36 Score=25.52 Aligned_cols=51 Identities=22% Similarity=0.461 Sum_probs=29.1
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----C----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----g----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.+..|..++|+.|+...-.+.++ + +.+-.+++++ .++..+ ..+-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~-~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCS-EFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHh-hcCCCcCCEEE
Confidence 56667778999999876555433 2 3333344443 223333 34456799764
No 182
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=52.26 E-value=10 Score=29.42 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=29.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-------CCceEE--EEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEV--FPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-------gIpye~--~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
-+..|..++||.|++..-.++++ +..+.+ +++.. .++.. +...-..+|.++-
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIA-SEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHH-hhcCCccccEEEE
Confidence 35556778999999776555432 322333 34432 23433 3445667998743
No 183
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=52.09 E-value=68 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=18.5
Q ss_pred eEEEEeCCChhHHHHHHHH----HHcCCceEEEE
Q 023026 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFP 164 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L----~ElgIpye~~~ 164 (288)
+..|...+||.|++..-.+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4445567999999865444 33455555444
No 184
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=51.65 E-value=49 Score=26.93 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=31.1
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC------CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg------Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+..|..+||+.|+...-.++++. +.+-.++|+. .++...+...-..+|.|+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~----~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW----PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC----ChHHHHHhcCCcccCEEE
Confidence 456677889999999887776653 2333345543 223232234456789774
No 185
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=51.38 E-value=89 Score=32.52 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=30.3
Q ss_pred eEEEEeCCChhHHHHHHH-------HHHc-CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREA-------ITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~-------L~El-gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
+.-|.-++|+.|+..... -+++ ++.+-.+++++.+...++..+ ..+-.-+|.++
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~-~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLK-HYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHH-HcCCCCCCEEE
Confidence 344567899999986432 1222 333334456554334455554 44566689773
No 186
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=49.80 E-value=29 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=25.9
Q ss_pred eEEEEeCCChhHHHHHHHH----HHc-CCceEEEEcCCC
Q 023026 135 LQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKG 168 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L----~El-gIpye~~~V~kg 168 (288)
|++|....||||......| .+. ++.++.+++...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 7888888999997765444 444 899999988754
No 187
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=36 Score=29.13 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCChhHHHHH----HHHHHcCCceEEEEcCCC---CcCCH--HHHHHhCC--CCcccEEEeCC-CCeeecChHHHHHHHH
Q 023026 141 EACPFCRRVR----EAITELDLSVEVFPCPKG---SIRHR--EMVRRLGG--KEQFPFLIDPN-TGVSMYESGDIVNYLF 208 (288)
Q Consensus 141 e~SPfCrkVr----~~L~ElgIpye~~~V~kg---~~~~~--efLk~lnP--~~qVPvLvDpn-~G~~L~ES~aIl~YL~ 208 (288)
.|||.|+++. .+|++...+..++.|.-| .|+.+ .|- ..| ..-||.|+--. .+..+-|.......|.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 4899999875 556655555555554333 23333 232 233 25789996532 3456777777667776
Q ss_pred HH
Q 023026 209 QQ 210 (288)
Q Consensus 209 e~ 210 (288)
+-
T Consensus 121 e~ 122 (128)
T KOG3425|consen 121 EM 122 (128)
T ss_pred HH
Confidence 53
No 188
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=48.45 E-value=51 Score=26.42 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=29.3
Q ss_pred CceEEEE--eCCChhHHHHHHHHHH-------cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 133 TRLQLFE--FEACPFCRRVREAITE-------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 133 ~~LtLY~--~e~SPfCrkVr~~L~E-------lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
+.+.|+- ..+||.|++-...|.+ .|+.+-.+..+.. .....+.+ .. .-.+|++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~-~~~~~~~~-~~-~~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP-EKLEAFDK-GK-FLPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH-HHHHHHHH-hc-CCCCeEEECC
Confidence 3444443 4689999986555543 3444433333321 11223433 33 3468999985
No 189
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=48.01 E-value=40 Score=24.80 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=15.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc
Q 023026 134 RLQLFEFEACPFCRRVREAITEL 156 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El 156 (288)
.+..|...+||.|++....+.++
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 45556667999999776555543
No 190
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=47.61 E-value=19 Score=27.02 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.3
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc
Q 023026 134 RLQLFEFEACPFCRRVREAITEL 156 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El 156 (288)
.+.+|..++|+.|+.....+.++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 45667778999999887766543
No 191
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=47.41 E-value=54 Score=30.13 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=44.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee------cChHHH
Q 023026 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L------~ES~aI 203 (288)
-+..|.-++|+.|+...-.++++ .-.+.+..++-. ..++.. +..+-..+|.++-=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~-~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNLA-KRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHHH-HHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 35566678999999887666543 212333333322 234443 34556789977421145322 235778
Q ss_pred HHHHHHHhCC
Q 023026 204 VNYLFQQYGK 213 (288)
Q Consensus 204 l~YL~e~Y~~ 213 (288)
.+|+.+.|..
T Consensus 132 ~~fi~~~~~~ 141 (224)
T PTZ00443 132 AAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHh
Confidence 8998888753
No 192
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=47.29 E-value=81 Score=23.60 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=29.2
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+.++..++|+.|+...-.+.++ .+.+-.++++. .++..++. +-..+|.++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~----~~~~~~~~-~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV----HQSLAQQY-GVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc----hHHHHHHC-CCCccCEEE
Confidence 35556678999999987655442 23333344432 34444434 446699773
No 193
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.60 E-value=47 Score=24.89 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=32.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcC----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCe
Q 023026 135 LQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~Elg----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~ 195 (288)
+..|..++|+.|+...-.+.++- -.+.+..++-. ..++... ..+-..+|+++-=.+|.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~-~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIAQ-QFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHHH-HcCCCCCCEEEEEeCCE
Confidence 44456689999999877776532 22333334322 2344443 44566799885222554
No 194
>PLN02309 5'-adenylylsulfate reductase
Probab=45.98 E-value=1.3e+02 Score=30.85 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=31.5
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
-+..|+.++|++|+.+.-.++++ + +.+-.++++.. ..+...+...-..+|.++.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCCceeeEEEE
Confidence 46677889999999877666544 2 33333444421 2333332345668998853
No 195
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=45.84 E-value=31 Score=26.80 Aligned_cols=56 Identities=27% Similarity=0.515 Sum_probs=30.8
Q ss_pred CceEEEEeC--CChhHHHHHHHHHHc-------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 133 TRLQLFEFE--ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 133 ~~LtLY~~e--~SPfCrkVr~~L~El-------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
+++.|+-+. +||.|+.....|.++ |+.+-.+..+.. ....+++++.+ ..+|++.|+
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D~ 90 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSDP 90 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEET
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccCc
Confidence 455444433 799998877555543 344444444322 12344554443 568899884
No 196
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=45.69 E-value=57 Score=28.31 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEeCCChhHHHHHHHHHHc---CCceEEEEcCCCCcCCHHHHHHhCCCCccc-EEEeC
Q 023026 138 FEFEACPFCRRVREAITEL---DLSVEVFPCPKGSIRHREMVRRLGGKEQFP-FLIDP 191 (288)
Q Consensus 138 Y~~e~SPfCrkVr~~L~El---gIpye~~~V~kg~~~~~efLk~lnP~~qVP-vLvDp 191 (288)
|...+||+|++-.-.|.++ |+.+-.+.++.......+|+++ .+. ..| ++.|+
T Consensus 75 FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~-~~~-~~~~~~~D~ 130 (185)
T PRK15412 75 VWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKE-LGN-PYALSLFDG 130 (185)
T ss_pred EECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHH-cCC-CCceEEEcC
Confidence 4456999999876565543 5554444443322233455543 322 345 35553
No 197
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=45.46 E-value=27 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=30.4
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc----C--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El----g--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
.+.+|..++|+.|+.....+.++ . -.+.+..++-... .++...+ .+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~-~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKK-YGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHh-CCCCCcCEEE
Confidence 46667788999999776555442 2 2244444432210 3444433 3456799774
No 198
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=45.43 E-value=24 Score=28.86 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=25.2
Q ss_pred CCceEEEEeCCChhHHHHHHHHH----Hc----CCceEEEEcCCC
Q 023026 132 PTRLQLFEFEACPFCRRVREAIT----EL----DLSVEVFPCPKG 168 (288)
Q Consensus 132 ~~~LtLY~~e~SPfCrkVr~~L~----El----gIpye~~~V~kg 168 (288)
+..|++|.-..||+|++....+. +. .|.+.+++++..
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34688888889999999876553 33 456677777544
No 199
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=45.27 E-value=18 Score=28.31 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=30.8
Q ss_pred ceEEEEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
-+..|..++|++|+...-.++++ ++.+- .|+.. ...++.. +...-..+|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~--~vd~~-~~~~~l~-~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHL--AIEES-SIKPSLL-SRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceE--EEECC-CCCHHHH-HhcCCeecCEEE
Confidence 45666778999999988777654 33333 33322 1234433 344567789764
No 200
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=45.23 E-value=29 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=23.3
Q ss_pred CceEEEEeCCChhHHHHHHHHHHc------CCceEEEEcCC
Q 023026 133 TRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK 167 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~El------gIpye~~~V~k 167 (288)
-.|..|....||+|++....+..+ ++.++.+++..
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~ 57 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVF 57 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcc
Confidence 345566666899999988776543 45666666543
No 201
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=41.37 E-value=46 Score=28.68 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=33.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcC-------CceEEEEcCCCCcCCHHHHHHhCC-----CCcccEEEeCCCCeeec
Q 023026 135 LQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGG-----KEQFPFLIDPNTGVSMY 198 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~Elg-------Ipye~~~V~kg~~~~~efLk~lnP-----~~qVPvLvDpn~G~~L~ 198 (288)
+..|..++||.|+...-.++++- +.+-.+++++ .++...+.+- -.++|+++-=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 55667789999998876665432 3334445543 2343333321 23489875323565444
No 202
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.25 E-value=81 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=18.7
Q ss_pred EEEEeCCChhHHHHHHHHHHc---CCceEEEEc
Q 023026 136 QLFEFEACPFCRRVREAITEL---DLSVEVFPC 165 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~El---gIpye~~~V 165 (288)
..|...+||.|++..-.+.++ |+.+-.+++
T Consensus 68 l~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~ 100 (173)
T TIGR00385 68 LNVWASWCPPCRAEHPYLNELAKDGLPIVGVDY 100 (173)
T ss_pred EEEECCcCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 334567999999876666543 544444444
No 203
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=40.49 E-value=1.1e+02 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=34.9
Q ss_pred CceEEE-EeCCChhHHHHH-HHHHH------cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEE--EeCCCCe
Q 023026 133 TRLQLF-EFEACPFCRRVR-EAITE------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGV 195 (288)
Q Consensus 133 ~~LtLY-~~e~SPfCrkVr-~~L~E------lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvL--vDpn~G~ 195 (288)
+.+-+| +.++|++|.+.. ..|+. ++=.|..+.++..+....++. ...+...+|++ +|+.+|.
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHH-HHhCccCCCeEEEEeCccCc
Confidence 445444 567999998863 23322 222455555554433444544 45667789977 5663453
No 204
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=39.85 E-value=9.1 Score=32.07 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=28.0
Q ss_pred ceEEEEeCCChhHHHHHHHH----HHc-CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEe
Q 023026 134 RLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L----~El-gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvD 190 (288)
.+.++.-+|||.|+...-++ ++. +|++.++..+.......+++ .++...||.++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l--t~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL--TNGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT--T-SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH--hCCCeecCEEEE
Confidence 56667778999998875444 444 67777665442211122333 277889998853
No 205
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=1.8e+02 Score=26.15 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=45.0
Q ss_pred CCCceEEEEeCCChhHHH----------HHHHHHHc------CCceEE-EEcCCCCc---CCHHHHHHhCCCCcccEEE-
Q 023026 131 SPTRLQLFEFEACPFCRR----------VREAITEL------DLSVEV-FPCPKGSI---RHREMVRRLGGKEQFPFLI- 189 (288)
Q Consensus 131 p~~~LtLY~~e~SPfCrk----------Vr~~L~El------gIpye~-~~V~kg~~---~~~efLk~lnP~~qVPvLv- 189 (288)
....+-+++-+.|+||.+ +|+.|.+. ++.+.- +....|+. ..-+.|.+...-...|.++
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 334678888899999965 46666653 121111 11111211 1223355566677788775
Q ss_pred -eCCCCeeecC---------hHHHHHHHHHHh
Q 023026 190 -DPNTGVSMYE---------SGDIVNYLFQQY 211 (288)
Q Consensus 190 -Dpn~G~~L~E---------S~aIl~YL~e~Y 211 (288)
|. +|..|.+ =.+|+.|.++.+
T Consensus 122 fdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 122 FDK-TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EcC-CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 44 5555544 367899988753
No 206
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.43 E-value=43 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred eEEEEeCCChhHHHHHHHHH----HcCCceEEEEcC
Q 023026 135 LQLFEFEACPFCRRVREAIT----ELDLSVEVFPCP 166 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~----ElgIpye~~~V~ 166 (288)
|++|....||||......|+ +.+++++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 46788889999988755554 457777777763
No 207
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.30 E-value=85 Score=25.42 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCCCceEE-EEeCCChhHHHHHHHHHHc-----CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee
Q 023026 130 DSPTRLQL-FEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (288)
Q Consensus 130 ~p~~~LtL-Y~~e~SPfCrkVr~~L~El-----gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~ 196 (288)
.+.+.+.+ |.-.||+.|+.+.-.++++ ++-|-.++|++ .++...+ ..-..+|+++--.+|..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~-~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKE-FNVKAMPTFVFYKGGEE 86 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHh-cCceEeeEEEEEECCEE
Confidence 34455444 4557999999998777665 34444456664 4555543 44667898753224543
No 208
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=39.01 E-value=1.5e+02 Score=27.97 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred ceEEEEeCCChhHHHHHHH----HHHcCCceEEEEcCCCCc-C------CHHHHHHhCCCCcccEE--EeCCCC
Q 023026 134 RLQLFEFEACPFCRRVREA----ITELDLSVEVFPCPKGSI-R------HREMVRRLGGKEQFPFL--IDPNTG 194 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~----L~ElgIpye~~~V~kg~~-~------~~efLk~lnP~~qVPvL--vDpn~G 194 (288)
.|.++.-..||+|.+---. -+..||++..+.++.... . .....+++ +-..+|+| ++++++
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQ 225 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCC
Confidence 4666666789999876544 456799988888864311 1 12223333 35679976 677655
No 209
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.83 E-value=39 Score=28.90 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=22.1
Q ss_pred eEEEEeCCChhHHHHHHHH----HHc----CCceEEEEcC
Q 023026 135 LQLFEFEACPFCRRVREAI----TEL----DLSVEVFPCP 166 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L----~El----gIpye~~~V~ 166 (288)
|++|....||||......| ++. +++++.+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4678888999998665554 455 5666766653
No 210
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=38.11 E-value=48 Score=25.50 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=26.2
Q ss_pred EEeCCChhHHHHHHHHHHcC----CceEEEEcCCCC-cCCHHHHHHhCCCCcccEEEe
Q 023026 138 FEFEACPFCRRVREAITELD----LSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLID 190 (288)
Q Consensus 138 Y~~e~SPfCrkVr~~L~Elg----Ipye~~~V~kg~-~~~~efLk~lnP~~qVPvLvD 190 (288)
|..++||.|+...-.+.++. -.+.++-+..++ ....++++ ..+...+|++.+
T Consensus 28 F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~-~~~~~~~p~~~~ 84 (114)
T cd02967 28 FLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLK-KHGLEAFPYVLS 84 (114)
T ss_pred EECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHH-HhCCCCCcEEec
Confidence 44568999998765565431 123333332221 12334443 343445787753
No 211
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=37.76 E-value=1.9e+02 Score=27.79 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=43.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHH-------cC--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE-eCCCCe--e----e
Q 023026 134 RLQLFEFEACPFCRRVREAITE-------LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTGV--S----M 197 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~E-------lg--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv-Dpn~G~--~----L 197 (288)
-+.+|..++|+.|+...-.+.+ .+ +.+-.++|+.. ++... ..+-..+|.++ ..+++. . .
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~-~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLAQ-KYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHHH-hCCCccccEEEEEeCCccceeEecCC
Confidence 4666777899999987644432 23 44445555532 34333 34456689773 222222 1 2
Q ss_pred cChHHHHHHHHHHhC
Q 023026 198 YESGDIVNYLFQQYG 212 (288)
Q Consensus 198 ~ES~aIl~YL~e~Y~ 212 (288)
....+|..++.+..+
T Consensus 96 ~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 96 RDADGIVKYMKKQSG 110 (462)
T ss_pred CCHHHHHHHHHHhcC
Confidence 356788999988765
No 212
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=36.34 E-value=1.9e+02 Score=29.64 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=30.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHc-------CCceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El-------gIpye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
|..|..++|++|+...-.++++ ++.+-.++|+... .++..+...-..+|.++
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~---~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQLGSFPTIL 433 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc---cHHHHHHcCCCccceEE
Confidence 4557778999999887655443 2444445665431 12232233456789774
No 213
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=36.12 E-value=95 Score=25.97 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHHH----HcCCceEEE--EcCC-CCcCCH--HHHHH-hCCCCcccEEEeCCCCeeecChHH
Q 023026 141 EACPFCRRVREAIT----ELDLSVEVF--PCPK-GSIRHR--EMVRR-LGGKEQFPFLIDPNTGVSMYESGD 202 (288)
Q Consensus 141 e~SPfCrkVr~~L~----ElgIpye~~--~V~k-g~~~~~--efLk~-lnP~~qVPvLvDpn~G~~L~ES~a 202 (288)
.|||.|+++.-++. ...-...++ .|+. ..++.+ .|-.. .-....||.|+--+++..|.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 38999999875554 332234444 4432 123333 22210 123567999986556667776543
No 214
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=35.81 E-value=42 Score=29.34 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=31.8
Q ss_pred EEEeCCChhHHHHHHHHHHcCC---ceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee
Q 023026 137 LFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (288)
Q Consensus 137 LY~~e~SPfCrkVr~~L~ElgI---pye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L 197 (288)
.|..++|+.|+.+.-.|+++-- .+.++.|+-.. . + +....+-..+|+|+-=.+|..+
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--~-~-l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--T-G-ASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--h-h-hHHhCCCCCCCEEEEEECCEEE
Confidence 3455799999988766655421 23333333221 1 2 3345667789988532356544
No 215
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=35.60 E-value=53 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=12.9
Q ss_pred EEEeCCChhHHHHHHHHH
Q 023026 137 LFEFEACPFCRRVREAIT 154 (288)
Q Consensus 137 LY~~e~SPfCrkVr~~L~ 154 (288)
.|...+||.|+...-.|.
T Consensus 23 ~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 23 YFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEECCCCchHHHHHHHHH
Confidence 345679999998765554
No 216
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.57 E-value=61 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=24.3
Q ss_pred ceEEEEeCCChhHHHHHHHH----HHcCCceEEEEcC
Q 023026 134 RLQLFEFEACPFCRRVREAI----TELDLSVEVFPCP 166 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L----~ElgIpye~~~V~ 166 (288)
.|++|....||||.....-| .+.+++++.+++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 47899888999998765444 4567777777764
No 217
>smart00594 UAS UAS domain.
Probab=34.73 E-value=1.8e+02 Score=23.44 Aligned_cols=61 Identities=13% Similarity=0.299 Sum_probs=32.8
Q ss_pred ceEEEEeCCChhHHHH-HHHHHH------cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEE--EeCCCCe
Q 023026 134 RLQLFEFEACPFCRRV-REAITE------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGV 195 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkV-r~~L~E------lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvL--vDpn~G~ 195 (288)
.+...+.++|+.|... |.++.. ++=.|....++-......++. ......++|.+ +++++|.
T Consensus 30 ~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 30 LWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVS-QFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred EEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHH-HhcCcCCCCEEEEEecCCCc
Confidence 4455566789999763 222221 122455554543333344444 34455679977 6776653
No 218
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.64 E-value=79 Score=32.32 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHc--CCc-eEEEEcCCCCcCCHHHHHHh---CC--CCcccEE----EeC-CCCeeecChHHHHHHHH
Q 023026 142 ACPFCRRVREAITEL--DLS-VEVFPCPKGSIRHREMVRRL---GG--KEQFPFL----IDP-NTGVSMYESGDIVNYLF 208 (288)
Q Consensus 142 ~SPfCrkVr~~L~El--gIp-ye~~~V~kg~~~~~efLk~l---nP--~~qVPvL----vDp-n~G~~L~ES~aIl~YL~ 208 (288)
.|||-.|+.++.+++ ++| |.++.|.+....-.++++++ |+ .++=|++ +|. ..|.-|....+-++|..
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Confidence 699999999999986 565 88888876544445666654 33 3567887 553 13367999999999999
Q ss_pred HHhCCCC
Q 023026 209 QQYGKGR 215 (288)
Q Consensus 209 e~Y~~~~ 215 (288)
..||-..
T Consensus 83 ~yyg~~s 89 (452)
T cd05295 83 SYYGITS 89 (452)
T ss_pred HHhCccc
Confidence 9999654
No 219
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=33.73 E-value=1.3e+02 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHc
Q 023026 135 LQLFEFEACPFCRRVREAITEL 156 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El 156 (288)
+..|...+||.|+...-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 3444567999999877666554
No 220
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=32.92 E-value=1.1e+02 Score=24.35 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCceEEEEe--CCChhHHHHHHHHHH-------cCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 132 PTRLQLFEF--EACPFCRRVREAITE-------LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 132 ~~~LtLY~~--e~SPfCrkVr~~L~E-------lgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
.+++.|+-+ .+||.|......|.+ .++.+-.+.++.. .....+.+ ..+...+|+|.|+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~-~~~~~~~~-~~~~~~~~~l~D~ 88 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP-FSHKAWAE-KEGGLNFPLLSDP 88 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHh-cccCCCceEEECC
Confidence 345555554 479999886555544 3444433433211 12234443 3334578888874
No 221
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=32.47 E-value=1e+02 Score=23.97 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=28.6
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcC--CceEEEEcCCC-CcCCHHHHHHhCCCCcccEEEeC
Q 023026 134 RLQLFEFEACPFCRRVREAITELD--LSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~Elg--Ipye~~~V~kg-~~~~~efLk~lnP~~qVPvLvDp 191 (288)
.+..|...+||.|+...-.|..+. +.+..+.++.+ .....++.++ .+ ..+|++.|+
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~-~~~~~~~d~ 81 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQK-KG-YGFPVINDP 81 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHH-cC-CCccEEECC
Confidence 344455678999998865555432 33333333322 1122344433 22 356777664
No 222
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=32.32 E-value=1e+02 Score=24.57 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=29.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcC---------CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE
Q 023026 135 LQLFEFEACPFCRRVREAITELD---------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~Elg---------Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv 189 (288)
+..|..++|+.|+.....++++. +.+-.++|+.. ..++..+ ...-..+|.++
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~-~~~i~~~Pt~~ 83 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCR-DFGVTGYPTLR 83 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHH-hCCCCCCCEEE
Confidence 55567789999998766654431 23333444322 2344443 34456789774
No 223
>PTZ00102 disulphide isomerase; Provisional
Probab=32.10 E-value=2.8e+02 Score=27.08 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred CceEEEEeCCChhHHHHHHHHH-------HcC--CceEEEEcCCCCcCCHHHHHHhCCCCcccEEE-eCCCCee----ec
Q 023026 133 TRLQLFEFEACPFCRRVREAIT-------ELD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTGVS----MY 198 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~-------Elg--Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLv-Dpn~G~~----L~ 198 (288)
.-+..|..++|++|++..-.+. +.+ +.+-.++|.. .++..+ ..+-..+|.++ -.+++.. -.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~~-~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELAQ-EFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHHH-hcCCCcccEEEEEECCceEEecCCC
Confidence 3567777889999997753222 223 3334445543 234333 34456699773 2223322 13
Q ss_pred ChHHHHHHHHHHhCC
Q 023026 199 ESGDIVNYLFQQYGK 213 (288)
Q Consensus 199 ES~aIl~YL~e~Y~~ 213 (288)
....|+.|+.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 467799999887653
No 224
>PTZ00056 glutathione peroxidase; Provisional
Probab=30.53 E-value=1.1e+02 Score=27.09 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=36.5
Q ss_pred EEEeCCChhHHHHHHHHHHc-------CCceEEEEcCC------CC-cCCHHHHHHhCCCCcccEEEeCCCCeeecChHH
Q 023026 137 LFEFEACPFCRRVREAITEL-------DLSVEVFPCPK------GS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGD 202 (288)
Q Consensus 137 LY~~e~SPfCrkVr~~L~El-------gIpye~~~V~k------g~-~~~~efLk~lnP~~qVPvLvDpn~G~~L~ES~a 202 (288)
-|...+||+|++-.-.|.++ |+.+.-++++. ++ ....+|+++ .+ -.+|++.|. ++.=.+...
T Consensus 45 ~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~-~~-~~fpvl~d~--~v~g~~~~~ 120 (199)
T PTZ00056 45 TNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDK-NK-IKYNFFEPI--EVNGENTHE 120 (199)
T ss_pred EEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHH-cC-CCceeeeee--eccCCccCH
Confidence 34456999998755444433 45444444431 11 123345543 32 358888652 111114566
Q ss_pred HHHHHHHHh
Q 023026 203 IVNYLFQQY 211 (288)
Q Consensus 203 Il~YL~e~Y 211 (288)
+..||.+..
T Consensus 121 l~~~l~~~~ 129 (199)
T PTZ00056 121 LFKFLKANC 129 (199)
T ss_pred HHHHHHHhC
Confidence 777777554
No 225
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=30.44 E-value=80 Score=26.07 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCceEEEEeCC--ChhHHHHHHHHHHcCCc------eEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeeecC
Q 023026 131 SPTRLQLFEFEA--CPFCRRVREAITELDLS------VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (288)
Q Consensus 131 p~~~LtLY~~e~--SPfCrkVr~~L~ElgIp------ye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L~E 199 (288)
....+..|+-++ ||.|+.+.-+|+++--. +-.++++. .++ +.....-..+|.|+-=.+|..+..
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~-la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQA-LAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHH-HHHHcCCCcCCEEEEEECCEEEEE
Confidence 334566677674 99999999888765322 22334432 344 344566778998854335655443
No 226
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=27.95 E-value=1e+02 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=29.7
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcCCceEEEEcC
Q 023026 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCP 166 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~ 166 (288)
..++.|..+.|..|..-...|+.+|+.+..+..+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~ 59 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD 59 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC
Confidence 4688999999999999999999999988887654
No 227
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.81 E-value=77 Score=24.58 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHcCCceEEEEcC
Q 023026 144 PFCRRVREAITELDLSVEVFPCP 166 (288)
Q Consensus 144 PfCrkVr~~L~ElgIpye~~~V~ 166 (288)
.|+||+..+|++.|++|+..+-+
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCC
Confidence 69999999999999999987643
No 228
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=26.78 E-value=97 Score=23.28 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCC----ceEEEEcCCCCcCCHHHHHHhCCCC--cccEEE
Q 023026 134 RLQLFEFEACPFCRRVREAITELDL----SVEVFPCPKGSIRHREMVRRLGGKE--QFPFLI 189 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgI----pye~~~V~kg~~~~~efLk~lnP~~--qVPvLv 189 (288)
.+.+|..++|+.|...+..+++..- .+.+.-++.+ ..+++.... +.. .+|+++
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~--~~~~~~~~~-~i~~~~~P~~~ 73 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD--DFGRHLEYF-GLKEEDLPVIA 73 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH--hhHHHHHHc-CCChhhCCEEE
Confidence 4556667789999999888877532 2333333322 134444433 444 899885
No 229
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=26.76 E-value=1.3e+02 Score=27.02 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.8
Q ss_pred EEEEeCCChhHHHHH---HHHHHcCCce------EEEEcCCCCcCCHHHHHHh--CCCCccc---EEEeC
Q 023026 136 QLFEFEACPFCRRVR---EAITELDLSV------EVFPCPKGSIRHREMVRRL--GGKEQFP---FLIDP 191 (288)
Q Consensus 136 tLY~~e~SPfCrkVr---~~L~ElgIpy------e~~~V~kg~~~~~efLk~l--nP~~qVP---vLvDp 191 (288)
.-|--.+|+.|+.-. ..|+..|+++ ..++.+.+.+....|++.. .-....| ++.|+
T Consensus 64 vn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 64 VHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred EEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 334445899998765 4455568998 6667665434444554311 1122455 88885
No 230
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.58 E-value=1.8e+02 Score=23.91 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=28.0
Q ss_pred CceEEEEe--CCChhHHHHH-------HHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeC
Q 023026 133 TRLQLFEF--EACPFCRRVR-------EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 133 ~~LtLY~~--e~SPfCrkVr-------~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDp 191 (288)
+.+.|+-+ .+||.|+.-. ..+.+.|+.+--+.++.. ....+++++.+ ..+|+|-|+
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~~~~~~~~--~~~~~l~D~ 95 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP-EKLSRFAEKEL--LNFTLLSDE 95 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhC--CCCeEEECC
Confidence 34555544 3689896533 233344554444433321 22335554432 358888774
No 231
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.39 E-value=1.2e+02 Score=23.83 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHcCCceEEEEcC
Q 023026 143 CPFCRRVREAITELDLSVEVFPCP 166 (288)
Q Consensus 143 SPfCrkVr~~L~ElgIpye~~~V~ 166 (288)
|-.+.++...+++.|+++++..++
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~ 36 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVP 36 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEec
Confidence 446778889999999998887654
No 232
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=25.72 E-value=1.5e+02 Score=27.79 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=37.2
Q ss_pred CceEEEEeCCChhHHHH----HHHHHHcCCceEEEEcCCCC-cC------CHHHHHHhCCCCcccEE--EeCCCC
Q 023026 133 TRLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGS-IR------HREMVRRLGGKEQFPFL--IDPNTG 194 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkV----r~~L~ElgIpye~~~V~kg~-~~------~~efLk~lnP~~qVPvL--vDpn~G 194 (288)
..|.++.-..||+|.+- +.+-+..||++..+.++... .. ......+++ ...+|+| ++++++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG-VKYFPALMLVDPKSG 218 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC-CcccceEEEEECCCC
Confidence 35666666789999875 45556679988888776321 11 111222233 4678966 677665
No 233
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=24.88 E-value=3.7e+02 Score=22.17 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=36.2
Q ss_pred ceEE-EEeCCChh--HH--HHH--------HHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee---
Q 023026 134 RLQL-FEFEACPF--CR--RVR--------EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--- 197 (288)
Q Consensus 134 ~LtL-Y~~e~SPf--Cr--kVr--------~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L--- 197 (288)
++.+ |.-.+|+. |+ ... ..|++.++.+--++++.. ++ +.+..+-..+|+|+-=.+|..+
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~----~~-La~~~~I~~iPTl~lfk~G~~v~~~ 103 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD----AK-VAKKLGLDEEDSIYVFKDDEVIEYD 103 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC----HH-HHHHcCCccccEEEEEECCEEEEee
Confidence 4444 44456665 98 222 122233565555666532 44 3345667889988432245422
Q ss_pred --cChHHHHHHHHH
Q 023026 198 --YESGDIVNYLFQ 209 (288)
Q Consensus 198 --~ES~aIl~YL~e 209 (288)
....+|..||.+
T Consensus 104 G~~~~~~l~~~l~~ 117 (120)
T cd03065 104 GEFAADTLVEFLLD 117 (120)
T ss_pred CCCCHHHHHHHHHH
Confidence 123456666554
No 234
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.40 E-value=1.3e+02 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHcCCceEEEEcCCCCcCCHH
Q 023026 143 CPFCRRVREAITELDLSVEVFPCPKGSIRHRE 174 (288)
Q Consensus 143 SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~e 174 (288)
-+.+.+++..|++.|++|+++-+.- ++.++
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~sa--HR~p~ 42 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASA--HRTPE 42 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--T--TTSHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec--cCCHH
Confidence 3789999999999999999876642 44444
No 235
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=95 Score=27.27 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=38.9
Q ss_pred ceEEEEeCCChhHHHHHHHHHHcCCc----eEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee
Q 023026 134 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~ElgIp----ye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L 197 (288)
-|.-|+.+||..|+.+.-.|+++.=+ +.++.++.++ +.+. .....-..||+++-=.+|+.+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~el-a~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPEL-AEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccch-HhhcceeeeeEEEEEECCEEe
Confidence 36678899999999999998887544 3334444332 3343 345667889977422256544
No 236
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=24.05 E-value=1.6e+02 Score=24.74 Aligned_cols=22 Identities=18% Similarity=0.702 Sum_probs=14.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHc
Q 023026 135 LQLFEFEACPFCRRVREAITEL 156 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~El 156 (288)
|..|...+||.|......|.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 3444567999998765555443
No 237
>PTZ00062 glutaredoxin; Provisional
Probab=23.23 E-value=3.9e+02 Score=24.21 Aligned_cols=88 Identities=10% Similarity=0.091 Sum_probs=50.9
Q ss_pred eEE-EEeCCChhHHHHHHHHHHcCCc---eEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCee-----ecChHHHHH
Q 023026 135 LQL-FEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-----MYESGDIVN 205 (288)
Q Consensus 135 LtL-Y~~e~SPfCrkVr~~L~ElgIp---ye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~-----L~ES~aIl~ 205 (288)
..| |.-+|||.|+.+..+|.++--+ +.+..|+.+ ..-..||+++-=.+|.. =.+...+..
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~ 88 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVS 88 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHH
Confidence 444 4467999999999888876432 444455432 23456897653224532 224567888
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHhHhHHHhhccCcc
Q 023026 206 YLFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGM 241 (288)
Q Consensus 206 YL~e~Y~~~~~p~~~~~era~v~~Wl~t~lr~g~G~ 241 (288)
++.+.++... . ..+..++..++....-|
T Consensus 89 ~~~~~~~~~~------~--~~~~~~v~~li~~~~Vv 116 (204)
T PTZ00062 89 FIRGWAQKGS------S--EDTVEKIERLIRNHKIL 116 (204)
T ss_pred HHHHHcCCCC------H--HHHHHHHHHHHhcCCEE
Confidence 8877766321 1 23455566555554433
No 238
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.09 E-value=91 Score=22.42 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=20.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCceEEEEcC
Q 023026 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCP 166 (288)
Q Consensus 135 LtLY~~e~SPfCrkVr~~L~ElgIpye~~~V~ 166 (288)
.+||....---+..++..|++.||++.+.+..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 36787766667889999999999999987654
No 239
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.97 E-value=88 Score=26.46 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=21.8
Q ss_pred ceEEEEeCCChhHHHHHHHHH----Hc--CCceEEEEc
Q 023026 134 RLQLFEFEACPFCRRVREAIT----EL--DLSVEVFPC 165 (288)
Q Consensus 134 ~LtLY~~e~SPfCrkVr~~L~----El--gIpye~~~V 165 (288)
.|.+|....||+|......|+ +. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 377888889999976655544 43 566666543
No 240
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.91 E-value=1.5e+02 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHH
Q 023026 144 PFCRRVREAITELDLSVEVFPCPKGSIRHREMVR 177 (288)
Q Consensus 144 PfCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk 177 (288)
+..+.+..+|+++||+|+.+-+.- ++.|+.+.
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSA--HRTPe~m~ 47 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSA--HRTPEKMF 47 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEec--cCCHHHHH
Confidence 567888899999999999988763 56665443
No 241
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.79 E-value=27 Score=29.71 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCC-CCeeecChHHHHHHHHHH
Q 023026 145 FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (288)
Q Consensus 145 fCrkVr~~L~ElgIpye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn-~G~~L~ES~aIl~YL~e~ 210 (288)
|...+++++++.|++.+.+.++.......+.-....=.+.+|.++|-- --...-|...||.||.++
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 567889999999999887665432111011000122257889888720 012344678899999986
No 242
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=22.78 E-value=1.5e+02 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHcCCceEEEEcCCCCcCCHH
Q 023026 143 CPFCRRVREAITELDLSVEVFPCPKGSIRHRE 174 (288)
Q Consensus 143 SPfCrkVr~~L~ElgIpye~~~V~kg~~~~~e 174 (288)
=|.++++...|+++||+|++.-+.- ++.++
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~Sa--HRtp~ 40 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSA--HRTPE 40 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECc--ccCHH
Confidence 3688999999999999999987753 44443
No 243
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.66 E-value=3e+02 Score=26.30 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=48.5
Q ss_pred CceEEEEeCCChhHHHHHHHHHHcC-CceEEEEcCCCCc-----------------CCHHHHHHhCCCCcccEEEeCCCC
Q 023026 133 TRLQLFEFEACPFCRRVREAITELD-LSVEVFPCPKGSI-----------------RHREMVRRLGGKEQFPFLIDPNTG 194 (288)
Q Consensus 133 ~~LtLY~~e~SPfCrkVr~~L~Elg-Ipye~~~V~kg~~-----------------~~~efLk~lnP~~qVPvLvDpn~G 194 (288)
+.+++... .||+..++.....++. =-|.++-+++.++ ...+++..+....++-++- .|-
T Consensus 87 ~gl~viDa-TCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~~~~~v~vvs--QTT 163 (280)
T TIGR00216 87 KGLEVIDA-TCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFKVEDLLGVVS--QTT 163 (280)
T ss_pred CCCeEEeC-CCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCCCCCcEEEEE--cCC
Confidence 45788876 5999999988777653 3366666543222 2233444433333333332 244
Q ss_pred eeecChHHHHHHHHHHhCCCC
Q 023026 195 VSMYESGDIVNYLFQQYGKGR 215 (288)
Q Consensus 195 ~~L~ES~aIl~YL~e~Y~~~~ 215 (288)
..+.+-.+|+.+|.++|+...
T Consensus 164 ~~~~~~~~i~~~l~~~~~~~~ 184 (280)
T TIGR00216 164 LSQEDTKEIVAELKARVPQKE 184 (280)
T ss_pred CcHHHHHHHHHHHHHhCCCcC
Confidence 556677899999999995433
No 244
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.03 E-value=78 Score=22.54 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.3
Q ss_pred eCCChhHHHHHHHHHHc
Q 023026 140 FEACPFCRRVREAITEL 156 (288)
Q Consensus 140 ~e~SPfCrkVr~~L~El 156 (288)
.++||+|++....|.+.
T Consensus 41 ~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 41 APWCPPCRAEAPLLEEL 57 (127)
T ss_pred cCcCHHHHhhchhHHHH
Confidence 67999999998777765
No 245
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.03 E-value=2.1e+02 Score=22.69 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=28.4
Q ss_pred CceEEEEe--CCChhHHHHHHHHH-------HcCCceEEEEcCCCC-cCCHHHHHHhCCCCcccEEEeC
Q 023026 133 TRLQLFEF--EACPFCRRVREAIT-------ELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDP 191 (288)
Q Consensus 133 ~~LtLY~~--e~SPfCrkVr~~L~-------ElgIpye~~~V~kg~-~~~~efLk~lnP~~qVPvLvDp 191 (288)
+.+.|+-+ .+||.|......|. +.|+. ++-|..+. ....+++++. + -.+|++.|+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~~-~-~~~~~l~D~ 88 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAV--VIGVSPDSVESHAKFAEKY-G-LPFPLLSDP 88 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHh-C-CCceEEECC
Confidence 34555444 47999987544433 33444 44443322 2233555433 3 358888875
No 246
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.35 E-value=2.4e+02 Score=24.33 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=36.8
Q ss_pred EEEEeCCChhHHHHHHHHHH-------cCCceEEEEcCC-CC------cCCHHHHHHhCCCCcccEEEe--CCCCeeecC
Q 023026 136 QLFEFEACPFCRRVREAITE-------LDLSVEVFPCPK-GS------IRHREMVRRLGGKEQFPFLID--PNTGVSMYE 199 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~E-------lgIpye~~~V~k-g~------~~~~efLk~lnP~~qVPvLvD--pn~G~~L~E 199 (288)
.++-..+||+|++-.-.|.+ .|+.+--++++. .+ ....+|+++..+ -.+|++.| . +|..
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~-~g~~--- 120 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQKIEV-NGEN--- 120 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCceEEec-CCCC---
Confidence 34556789999985544432 355444455431 11 112234332222 35898843 3 2321
Q ss_pred hHHHHHHHHHHhC
Q 023026 200 SGDIVNYLFQQYG 212 (288)
Q Consensus 200 S~aIl~YL~e~Y~ 212 (288)
...+..||.+..+
T Consensus 121 ~~~~~~~l~~~~~ 133 (183)
T PTZ00256 121 THEIYKYLRRNSE 133 (183)
T ss_pred CCHHHHHHHhhCC
Confidence 3457778887654
No 247
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.28 E-value=2.3e+02 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=31.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcC-----CceEEEEcCCCCcCCHHHHHHhCCCCcccEEEeCCCCeee
Q 023026 136 QLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (288)
Q Consensus 136 tLY~~e~SPfCrkVr~~L~Elg-----Ipye~~~V~kg~~~~~efLk~lnP~~qVPvLvDpn~G~~L 197 (288)
..|..++|+.|+.+.-.|.++- +.|-.++++. .. ...+-..+|+|+--.+|..+
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~-~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CI-PNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hH-hhCCCCCCCEEEEEECCEEE
Confidence 3355679999999987776653 3333333321 12 34567789988533356433
Done!