BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023027
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 45 LNVNPQ---KALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPR 101
L +NP+ AL +NP + + YL LGL + R+L + PK+ T +
Sbjct: 134 LGLNPEPVFMALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTMR-QQ 192
Query: 102 DLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPS---FKFLVEFGFKGSHKI 158
D++ I+ L E+ L + L RCP +L D PS +KF + G +
Sbjct: 193 DIDNIVKVLKEKCLFTVQHITDILHRCPAVLQED------PSELEYKFQYAYFRMGLTHL 246
Query: 159 NCQTTVLLVSSVERTLKPKIDFLKNLG 185
+ T L S+ + +K + +L+ LG
Sbjct: 247 DIVRTDFLQYSIAK-VKQRHIYLERLG 272
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 45 LNVNPQ---KALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPR 101
L +NP+ AL +NP + YL LGL + R+L + P++ T R
Sbjct: 134 LGLNPEPVFNALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMH-QR 192
Query: 102 DLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQ 161
D++ ++ L E+ L + L RCP +L D +L +KF + G ++
Sbjct: 193 DIDRVVKVLREKCLFTAQHITDVLHRCPTVLQED-PNEL--EYKFQYAYFRMGLTHLDIV 249
Query: 162 TTVLLVSSVERTLKPKIDFLKNLG 185
T L S+ + +K + +L+ LG
Sbjct: 250 RTNFLQYSITK-IKQRHIYLERLG 272
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 45 LNVNPQ---KALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPR 101
L +NP+ L ++P P+ + YL LGL + R+L P++ T +
Sbjct: 134 LGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQ 192
Query: 102 DLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKF 146
D+ + L E+ L + K L CP +L DL QL F++
Sbjct: 193 DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQY 236
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 43/188 (22%)
Query: 74 LLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILV 133
L+ LG+ V + LLT D +D+ I+ FL ++V I N L LT+ P IL
Sbjct: 147 LVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFL-KDVGIEDNQLGPFLTKNPYILG 205
Query: 134 SDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVER 193
+L+ L+ ++ +LK+ + E+ +
Sbjct: 206 EELEA-----------------------------------LETRVAYLKSKKFGNAEITQ 230
Query: 194 MVIRSPGLLTFSVENNLVPKVDFFIQEM----KGDLDELKKFPQYFSFSLERKIKPRYRI 249
MV R+P LL FSVE L ++ FF E+ K D + +FP+ + LE +K ++
Sbjct: 231 MVSRAPYLLLFSVE-RLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLE-PVKENLQV 288
Query: 250 L-VDHGFK 256
V+ GF+
Sbjct: 289 CQVEFGFE 296
>sp|Q01346|VU8_HHV6U Protein U8 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U8 PE=3
SV=1
Length = 356
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 110 LLEEVLIPFNDLPKSLTRCPRILVSDLKTQ----LRPSFKFLVEFGFKGSHKINCQTTVL 165
LL + IP+ D+P + R RI + DL+T + +F+ V +G G++ I C V
Sbjct: 87 LLGTIQIPYRDVPILIGRSKRIFLHDLETDTLHFVCDNFEQFVRYGVLGTNIITCAEPVY 146
Query: 166 LVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENN 209
E P+ + L+NL +D V+RSP L V+ N
Sbjct: 147 RHGLYE---GPRFESLENLMNND------VLRSPYTLNVHVKLN 181
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Query: 73 YLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL-IPFND----LPKSLTR 127
+L S+GL+ + R+L P+ + + + + +++FL E + + ND + K +++
Sbjct: 164 FLCSVGLTHKCLCRLLTNAPRTFSNSLNLN-KQMVEFLQETGMSLGHNDPRDFVRKIISK 222
Query: 128 CPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSS-VERTLKPKIDFLK---- 182
P IL+ K +++ + +FL + + +N + +LL+ R L D K
Sbjct: 223 NPSILIQSTK-RVKTNIEFL-----QSTFNLNKRDLLLLICGPGARILDLSNDCTKKNYT 276
Query: 183 -------NLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYF 235
+LG S+EEV+R V+ ++ F E K+D I+E K ++ + P+
Sbjct: 277 NIRERLLSLGCSEEEVQRFVLSYLNMV-FLSEKKFNDKIDCLIEE-KISASQIIENPRIL 334
Query: 236 SFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLK 280
S+ +K R R L G+ L + + +S ++ R E +LK
Sbjct: 335 DSSIN-TLKTRIRELSHAGYDLSTSSIALLS---WSQRRYEAKLK 375
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 41 HLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIP 100
+L + V+ A + P +++ L+ +LLS G S +G I+ +P+ +T P
Sbjct: 60 NLVTMGVDIDMARRRQPGVFNKAVTNEQELKLFLLSKGASDKVIGSIISRYPRAITR-TP 118
Query: 101 RDLEPIIDFLLEEVLIPFNDLPKSLTRCPR-ILVSDLKTQLRPSFKFLVEFGFKGSHKIN 159
L D L +++ ++ L R P S+ L + KFL G +HK
Sbjct: 119 ESLSKRWD-LWRKIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGL--THKCL 175
Query: 160 CQTTVLLVSSVERTL-------KPKIDFLKNLGLS------DEEVERMVIRSPGLLTFSV 206
C+ L+++ RT K ++FL+ G+S + V +++ ++P +L S
Sbjct: 176 CR----LLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHNDPRDFVRKIISKNPSILIQST 231
Query: 207 E 207
+
Sbjct: 232 K 232
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 41 HLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIP 100
+L + V+ A + P +++ L+ +LLS G S +G I+ +P+ +T P
Sbjct: 55 NLLTMGVDVDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPRAITR-TP 113
Query: 101 RDLEPIIDFLLEEVLIPFNDLPKSLTRCPR-ILVSDLKTQLRPSFKFLVEFGFKGSHKIN 159
L D L E++ ++ L R P S+ L + KFL G +HK
Sbjct: 114 ESLSKRWD-LWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGL--THKCL 170
Query: 160 CQTTVLLVSSVERTL-------KPKIDFLKNLGLS------DEEVERMVIRSPGLLTFSV 206
C+ L++S RT K ++FL+ G+S + V +++ ++P +L S
Sbjct: 171 CR----LLTSAPRTFSNSLNLNKQMVEFLQETGISLGHNNPTDFVRKIISKNPSILIQST 226
Query: 207 E 207
+
Sbjct: 227 K 227
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 73 YLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL-IPFND----LPKSLTR 127
+L S+GL+R + R+L P+ + + + + +++FL L + ND + K + +
Sbjct: 182 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFK 240
Query: 128 CPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSS------------VERTLK 175
P IL+ K +++ + +FL + + +N + ++L+ R+
Sbjct: 241 NPFILIQSTK-RVKANIEFL-----RSTFNLNSEELLVLICGPGAEILDLSNDYARRSYA 294
Query: 176 PKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYF 235
+ L +LG ++EEV++ V+ P ++ F E K+D ++E + ++ + P+
Sbjct: 295 NIKEKLFSLGCTEEEVQKFVLSYPDVI-FLAEKKFNDKIDCLMEE-NISISQIIENPRVL 352
Query: 236 SFSLERKIKPRYRILVDHGFKLPLAQ--MLRVSDGEFNARL 274
S+ +K R + LV+ G L +L S + A+L
Sbjct: 353 DSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKL 392
>sp|Q9QJ52|VU8_HHV6Z Protein U8 OS=Human herpesvirus 6B (strain Z29) GN=U8 PE=4 SV=1
Length = 411
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 110 LLEEVLIPFNDLPKSLTRCPRILVSDLKTQ----LRPSFKFLVEFGFKGSHKINCQTTVL 165
LL + IP+ D+P + R RI + DL+T + +F+ V +G G++ I C V
Sbjct: 142 LLGTIQIPYRDVPILIGRSKRIFLHDLETDTLHFVCDNFEQFVRYGVLGTNIITCAEPVY 201
Query: 166 LVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENN 209
+ P+ + L+NL +D V+RSP L ++ N
Sbjct: 202 RHGLYD---GPRFESLENLRNND------VLRSPCTLNIHLKLN 236
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 173 TLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEM----KGDLDEL 228
LK ++ +L++ S ++ RMV +P LL+FSVE L ++ FF +E+ K D +
Sbjct: 217 NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVE-RLDNRLGFFQKELELNVKKTRDLV 275
Query: 229 KKFPQYFSFSLE 240
+ P+ + SLE
Sbjct: 276 VRLPRLLTGSLE 287
>sp|Q5R9U8|MTERF_PONAB Transcription termination factor, mitochondrial OS=Pongo abelii
GN=MTERF PE=2 SV=1
Length = 398
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 73 YLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRIL 132
+L S+GL+R + R+L P+ + + + + +++FL L ++ P R +I+
Sbjct: 182 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVR--KII 238
Query: 133 VSDLK-TQLRPSFKFLVEFGFKGSHKINCQTTVLLVSS------------VERTLKPKID 179
+ L Q K +EF + + +N + ++L+ R+ +
Sbjct: 239 LKTLYLIQSTKRVKANIEF-LRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKE 297
Query: 180 FLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSL 239
L +LG ++EEV++ V+ P ++ F E K+D ++E + ++ + P+ S+
Sbjct: 298 KLFSLGCTEEEVQKFVLSYPDVI-FLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSI 355
Query: 240 ERKIKPRYRILVDHGFKLPLAQ--MLRVSDGEFNARL 274
+K R + LV+ G L +L S + A+L
Sbjct: 356 S-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKL 391
>sp|Q9RKC6|Y3161_STRCO Putative ABC transporter ATP-binding protein SCO3161
OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2)
/ M145) GN=SCO3161 PE=3 SV=1
Length = 260
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 81 RPAVGRILDMHPKLLTADIP---------RDLEPIIDFLLEEVLIPFNDLPKSLTRCPRI 131
R AV +L M P++L D P R+L I+ L VL+ +DLP +L CPR
Sbjct: 157 RVAVATVLAMEPEILVLDEPSSNLDPASRRELADILRSLDVTVLMVTHDLPYALELCPRA 216
Query: 132 LV 133
L+
Sbjct: 217 LI 218
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 74 LLSLGLSRPAVGRILDMHPK----LLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCP 129
LL + LS+ ++ HP+ LL D +D++ ++ FL ++V I N L LT+
Sbjct: 161 LLGVDLSK------IEKHPEAANLLLRLDFEKDIKQMLLFL-KDVGIEDNQLGAFLTKNH 213
Query: 130 RILVSDLKT-QLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFL-KNLGLS 187
I DL+ + R ++ F ++ + LL SVER L ++ F K L LS
Sbjct: 214 AIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELS 272
Query: 188 DEEVERMVIRSPGLLTFSVE 207
++ +V+R P LLT S+E
Sbjct: 273 VKKTRDLVVRLPRLLTGSLE 292
>sp|A2AX52|CO6A4_MOUSE Collagen alpha-4(VI) chain OS=Mus musculus GN=Col6a4 PE=1 SV=2
Length = 2309
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 100 PRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKIN 159
PR + + +EE L+P +P L LV D + +P+F+ +V F H +N
Sbjct: 613 PRVMTDVAKDAVEECLVP---VPADLV----FLVEDFSSARQPNFQRVVHFLTTTVHSLN 665
Query: 160 CQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTF 204
VS V + KP+++F ++ S +V R + R LTF
Sbjct: 666 IHPDTTRVSLVFYSEKPRLEFSLDMYQSAAQVLRHLDR----LTF 706
>sp|Q82HA2|Y3608_STRAW Putative ABC transporter ATP-binding protein SAV_3608
OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=SAV_3608 PE=3 SV=1
Length = 262
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 81 RPAVGRILDMHPKLLTADIP---------RDLEPIIDFLLEEVLIPFNDLPKSLTRCPRI 131
R AV +L M P++L D P R+L I+ L VL+ +DLP +L CPR
Sbjct: 159 RVAVATVLAMEPEILVLDEPSSNLDPASRRELADILRSLDVTVLMVTHDLPYALELCPRS 218
Query: 132 LV 133
L+
Sbjct: 219 LI 220
>sp|A4FZL0|TYPH_METM5 Putative thymidine phosphorylase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=MmarC5_1346 PE=3 SV=1
Length = 505
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 178 IDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQ-EMKGDLDELKKFPQYFS 236
++ L N+ L +EE++R+V + G L + NL P D I E +D PQ +
Sbjct: 209 MEVLTNVELKEEEIKRIVKTTNGCLAWGGGVNLAPADDIIINVERPVSID---PQPQLLA 265
Query: 237 FSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAE 283
+ +KI + V +P+ + +++ + A+L ++L E
Sbjct: 266 SVMAKKIATGIKYTV---IDIPVGKGVKIKNEAEGAKLARKFIELGE 309
>sp|A9A6M7|TYPH_METM6 Putative thymidine phosphorylase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=MmarC6_0624 PE=3 SV=1
Length = 505
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 178 IDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQ-EMKGDLDELKKFPQYFS 236
++ L N+ L +EE++R+V + G L + NL P D I E +D PQ +
Sbjct: 209 MEVLTNVELKEEEIKRIVKTTNGCLAWGGGVNLAPADDIIINVERPVSID---PQPQLLA 265
Query: 237 FSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAE 283
+ +KI + V +P+ + +++ + A+L ++L E
Sbjct: 266 SVMAKKIATGIKYTV---IDIPVGKGVKIKNEAEGAKLARKFIELGE 309
>sp|A6VIW6|TYPH_METM7 Putative thymidine phosphorylase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=MmarC7_1329 PE=3 SV=1
Length = 505
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 178 IDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQ-EMKGDLDELKKFPQYFS 236
++ L N+ L +EE++R+V + G L + NL P D I E +D PQ +
Sbjct: 209 MEVLTNVELKEEEIKRIVKTTNGCLAWGGGVNLAPADDIIINVERPVSID---PQPQLLA 265
Query: 237 FSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAE 283
+ +KI + V +P+ + +++ + A+L ++L E
Sbjct: 266 SVMAKKIATGIKYTV---IDIPVGKGVKIKNEAEGAKLARKFIELGE 309
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 72 HYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFND-------LPKS 124
+ LGL + R+L P + + ++ + ++ L E L L K
Sbjct: 154 QFFQELGLKNVVISRLLTAAPNVFHNPVEKN-KQMVRILQESYLDVGGSEANMKVWLLKL 212
Query: 125 LTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTV--LLVSSVERTLKPKIDFLK 182
L++ P IL++ T ++ + +FL E GF + + + L R+++ I F K
Sbjct: 213 LSQNPFILLNS-PTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSK 271
Query: 183 N-LGLSDEEVERMVIRSPGLLTFSV 206
N +D +++++V++ P LL +SV
Sbjct: 272 NAFKCTDHDLKQLVLKCPALLYYSV 296
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 53 LHQNPNFRCTPLSSLLSLEHYLLSLGLSR-PAVGRILDMHP------KLLTADIPRDLEP 105
LHQNPN R P+SS S +G SR P +G+ H ++L + I + +
Sbjct: 55 LHQNPNSR-QPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDS 113
Query: 106 I-IDFLLEEVLIPFNDLPKSLT 126
+D +L E+ PF D P+S +
Sbjct: 114 GQLDSVLSELFEPFKDKPESTS 135
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 174 LKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEM----KGDLDELK 229
LK ++ +L++ S ++ MV +P LL+FSVE L ++ FF +E+ K D +
Sbjct: 215 LKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVE-RLDNRLGFFQKELELSVKKTRDLVV 273
Query: 230 KFPQYFSFSLE 240
+ P+ + SLE
Sbjct: 274 RLPRLLTGSLE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,542,681
Number of Sequences: 539616
Number of extensions: 4375331
Number of successful extensions: 12711
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 12689
Number of HSP's gapped (non-prelim): 53
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)