Query 023027
Match_columns 288
No_of_seqs 178 out of 1286
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 100.0 3E-44 1E-48 320.4 7.1 239 36-281 6-262 (270)
2 3mva_O Transcription terminati 100.0 3.3E-43 1.1E-47 323.7 12.0 238 34-277 18-342 (343)
3 4fp9_B Mterf domain-containing 100.0 5.4E-36 1.8E-40 273.0 10.2 201 66-276 45-261 (335)
4 3m66_A Mterf3, mterf domain-co 100.0 3.1E-31 1.1E-35 236.2 7.6 209 68-281 6-226 (270)
5 4fp9_B Mterf domain-containing 99.9 1.1E-25 3.8E-30 205.0 9.2 177 34-224 45-228 (335)
6 3mva_O Transcription terminati 99.9 1.4E-25 4.8E-30 206.2 9.2 147 65-218 17-166 (343)
7 4fzv_B Mterf domain-containing 99.4 1.1E-12 3.9E-17 103.5 12.8 155 114-273 43-213 (239)
8 4fzv_B Mterf domain-containing 98.1 4E-06 1.4E-10 66.2 6.2 147 66-223 32-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 87.0 0.7 2.4E-05 29.8 3.6 35 54-91 20-54 (54)
10 4ae4_A Ubiquitin-associated pr 86.5 1.4 4.9E-05 33.2 5.8 99 36-149 9-113 (118)
11 1oqy_A HHR23A, UV excision rep 81.2 1.4 4.8E-05 40.0 4.4 38 175-220 326-363 (368)
12 4ae4_A Ubiquitin-associated pr 80.9 15 0.00053 27.5 11.3 39 176-222 78-116 (118)
13 2ooa_A E3 ubiquitin-protein li 80.7 4.6 0.00016 25.7 5.3 43 65-116 9-51 (52)
14 3ff5_A PEX14P, peroxisomal bio 80.6 2.2 7.4E-05 27.5 3.9 33 162-198 22-54 (54)
15 2w84_A Peroxisomal membrane pr 80.4 1.7 5.9E-05 29.5 3.5 34 55-91 26-59 (70)
16 1ify_A HHR23A, UV excision rep 80.2 5.5 0.00019 24.9 5.8 38 67-112 8-45 (49)
17 2w84_A Peroxisomal membrane pr 74.4 4.2 0.00014 27.6 4.1 33 162-198 27-59 (70)
18 2knz_A Ubiquilin-4; cytoplasm, 73.7 3.3 0.00011 26.4 3.3 12 36-47 12-23 (53)
19 1oqy_A HHR23A, UV excision rep 70.8 3 0.0001 37.8 3.6 19 34-52 167-185 (368)
20 1ify_A HHR23A, UV excision rep 70.8 11 0.00037 23.4 5.3 39 173-219 7-45 (49)
21 2knz_A Ubiquilin-4; cytoplasm, 68.8 13 0.00043 23.6 5.3 39 66-112 10-49 (53)
22 2g3q_A Protein YBL047C; endocy 66.9 10 0.00036 22.6 4.5 36 68-111 5-40 (43)
23 1veg_A NEDD8 ultimate buster-1 64.4 14 0.00049 25.8 5.3 41 174-222 29-69 (83)
24 1z96_A DNA-damage, UBA-domain 64.3 18 0.00062 20.9 5.2 24 68-91 5-28 (40)
25 1vg5_A RSGI RUH-014, rhomboid 64.2 13 0.00043 25.4 4.9 38 66-111 28-65 (73)
26 1wji_A Tudor domain containing 64.0 15 0.00053 24.1 5.2 38 175-220 10-47 (63)
27 2e8o_A SAM domain and HD domai 63.9 30 0.001 24.9 7.3 62 16-81 14-78 (103)
28 2d9s_A CBL E3 ubiquitin protei 63.7 21 0.00072 22.7 5.4 42 65-115 7-48 (53)
29 2dkl_A Trinucleotide repeat co 62.8 7.7 0.00026 27.3 3.7 20 69-88 23-42 (85)
30 1wji_A Tudor domain containing 62.5 19 0.00063 23.7 5.4 37 68-112 10-46 (63)
31 1vg5_A RSGI RUH-014, rhomboid 61.4 15 0.00051 25.1 4.8 43 30-76 24-66 (73)
32 2dak_A Ubiquitin carboxyl-term 61.1 17 0.00058 23.8 5.0 41 174-222 9-49 (63)
33 2jy5_A Ubiquilin-1; UBA, alter 59.9 15 0.00052 23.1 4.4 40 171-218 9-49 (52)
34 2cos_A Serine/threonine protei 59.5 3.6 0.00012 26.3 1.3 43 33-79 7-50 (54)
35 2jy5_A Ubiquilin-1; UBA, alter 58.1 23 0.00078 22.2 5.0 38 66-111 11-49 (52)
36 1wiv_A UBP14, ubiquitin-specif 57.5 20 0.00068 24.3 4.9 39 174-220 29-67 (73)
37 1wgn_A UBAP1, ubiquitin associ 56.5 14 0.00049 24.3 3.8 40 174-221 19-58 (63)
38 1veg_A NEDD8 ultimate buster-1 56.3 39 0.0013 23.6 6.4 40 68-115 30-69 (83)
39 2dai_A Ubadc1, ubiquitin assoc 52.1 32 0.0011 23.9 5.4 40 175-222 30-69 (83)
40 1vej_A Riken cDNA 4931431F19; 50.1 42 0.0014 22.8 5.6 38 66-111 28-66 (74)
41 2dah_A Ubiquilin-3; UBA domain 50.1 21 0.00071 22.7 3.8 41 171-219 6-47 (54)
42 1wgn_A UBAP1, ubiquitin associ 48.9 19 0.00065 23.7 3.5 37 68-112 20-56 (63)
43 2dkl_A Trinucleotide repeat co 47.5 42 0.0014 23.5 5.4 48 29-81 16-63 (85)
44 1wiv_A UBP14, ubiquitin-specif 47.2 33 0.0011 23.2 4.7 36 68-111 30-65 (73)
45 2dak_A Ubiquitin carboxyl-term 46.6 29 0.001 22.6 4.3 37 68-112 10-46 (63)
46 2oo9_A E3 ubiquitin-protein li 45.2 28 0.00096 21.4 3.6 38 66-111 3-40 (46)
47 2dna_A Unnamed protein product 44.2 38 0.0013 22.6 4.5 43 169-219 14-57 (67)
48 1wr1_B Ubiquitin-like protein 43.5 36 0.0012 22.0 4.2 42 170-219 13-55 (58)
49 2dag_A Ubiquitin carboxyl-term 43.1 39 0.0013 22.9 4.6 41 175-222 10-50 (74)
50 2ekk_A UBA domain from E3 ubiq 43.0 19 0.00064 22.0 2.7 35 175-218 10-44 (47)
51 2cpw_A CBL-interacting protein 42.6 34 0.0012 22.5 4.1 39 176-221 21-59 (64)
52 3oq9_A Tumor necrosis factor r 42.0 75 0.0026 22.2 6.1 46 66-115 11-56 (86)
53 3idw_A Actin cytoskeleton-regu 40.3 9.1 0.00031 26.0 0.9 14 70-83 5-18 (72)
54 2bwb_A Ubiquitin-like protein 38.2 35 0.0012 20.8 3.4 41 170-218 3-44 (46)
55 1dv0_A DNA repair protein HHR2 36.8 12 0.00042 23.0 1.1 35 176-218 6-40 (47)
56 1ixs_A Holliday junction DNA h 36.5 24 0.00083 23.1 2.6 25 67-91 17-41 (62)
57 4ayb_F DNA-directed RNA polyme 35.3 57 0.0019 24.0 4.8 74 33-126 32-105 (113)
58 2juj_A E3 ubiquitin-protein li 33.4 57 0.002 20.8 3.8 40 67-115 7-46 (56)
59 3ayh_A DNA-directed RNA polyme 33.3 22 0.00076 27.2 2.3 64 56-126 66-129 (136)
60 2c35_A Human RPB4, DNA-directe 33.1 44 0.0015 26.1 4.0 32 62-93 85-116 (152)
61 2crn_A Ubash3A protein; compac 32.4 68 0.0023 21.0 4.3 39 177-222 12-50 (64)
62 3k9o_A Ubiquitin-conjugating e 28.1 90 0.0031 25.2 5.3 24 104-128 164-187 (201)
63 1q08_A Zn(II)-responsive regul 27.8 48 0.0016 23.2 3.2 22 176-197 7-28 (99)
64 4dnc_D MALE-specific lethal 1 27.6 56 0.0019 20.3 2.9 26 261-286 22-47 (48)
65 2cwb_A Chimera of immunoglobul 27.5 38 0.0013 24.9 2.6 40 65-112 64-104 (108)
66 3dfg_A Xcrecx, regulatory prot 25.1 2.4E+02 0.0081 21.7 10.8 150 23-199 9-160 (162)
67 2cp8_A NEXT to BRCA1 gene 1 pr 24.5 75 0.0026 20.2 3.2 40 171-218 6-46 (54)
68 1wj7_A Hypothetical protein (R 24.1 95 0.0032 22.6 4.1 39 66-112 38-77 (104)
69 2lky_A Uncharacterized protein 23.6 1.8E+02 0.0061 21.4 5.6 82 67-153 10-94 (112)
70 2kvc_A Putative uncharacterize 23.0 2.2E+02 0.0074 20.6 6.3 82 67-153 8-92 (103)
71 3ezq_A Tumor necrosis factor r 22.7 88 0.003 23.2 3.8 28 66-93 19-46 (115)
72 1whc_A RSGI RUH-027, UBA/UBX 3 21.7 56 0.0019 21.3 2.3 39 177-222 12-50 (64)
73 2xzm_O RPS13E; ribosome, trans 21.6 60 0.0021 25.3 2.8 37 55-91 23-59 (153)
74 1wj7_A Hypothetical protein (R 21.4 69 0.0024 23.3 2.9 40 173-220 38-78 (104)
75 1vek_A UBP14, ubiquitin-specif 21.0 91 0.0031 21.6 3.4 41 175-222 30-70 (84)
76 3u5c_N S27A, YS15, 40S ribosom 20.6 64 0.0022 25.1 2.7 58 55-117 21-81 (151)
77 2y0m_B MALE-specific lethal 1 20.6 81 0.0028 21.5 2.9 26 261-286 30-55 (74)
78 1ich_A TNF-1, tumor necrosis f 20.5 1.1E+02 0.0037 22.6 3.9 54 68-125 26-79 (112)
79 2of5_A Death domain-containing 20.3 81 0.0028 23.2 3.2 41 71-115 39-79 (114)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3e-44 Score=320.36 Aligned_cols=239 Identities=20% Similarity=0.337 Sum_probs=218.9
Q ss_pred hHhHHHHhhCCCChhhHhhhCCCC----CCCCCC-ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHH
Q 023027 36 RQKILHLQALNVNPQKALHQNPNF----RCTPLS-SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFL 110 (288)
Q Consensus 36 ~~~~~~L~~~G~~~~~l~~~~P~l----l~~s~~-~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L 110 (288)
.++++||.++|++.+++ .+.|.+ +.++.+ ++.++++||+++|+++++|+++++++|.++++++++ +.++++||
T Consensus 6 s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 47899999999999886 556776 899986 899999999999999999999999999999999986 99999999
Q ss_pred hhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHH-HHhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCC
Q 023027 111 LEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFL-VEFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGL 186 (288)
Q Consensus 111 ~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L-~~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~ 186 (288)
+ ++|+++++|.+++.++|++|++++++ ++++++|| .++|+++. .+++.++|.+++.+.+ .++++++++ +++||
T Consensus 84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 84 H-SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF 160 (270)
T ss_dssp H-HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred H-HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence 9 69999999999999999999999985 99999999 57999865 5889999999999985 699999976 79999
Q ss_pred CHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCcHHHHhhCCcccccccccccHhhHHHHHHC---CC------CC
Q 023027 187 SDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDH---GF------KL 257 (288)
Q Consensus 187 s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~~~~l~~~P~~L~~sle~~l~pR~~~L~~~---G~------~~ 257 (288)
+.+|+..|+.++|++|++|.+ +|++|++||.++||++.++|.++|.+|+||+| ||+|||.+|+.. |+ .+
T Consensus 161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~ 238 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI 238 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence 999999999999999999997 99999999999999999999999999999999 999999998764 44 26
Q ss_pred ChhhhcccCHHHHHHHHHHHHHhh
Q 023027 258 PLAQMLRVSDGEFNARLIEMRLKL 281 (288)
Q Consensus 258 ~l~~~l~~s~~~F~~~~~~~~~~~ 281 (288)
++.+++++||++|+++|++...+.
T Consensus 239 ~L~~~l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 239 SLDKLVSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp CHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred CHHHHhcCCHHHHHHHHhcCCHHH
Confidence 778899999999999997765543
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.3e-43 Score=323.73 Aligned_cols=238 Identities=22% Similarity=0.391 Sum_probs=195.3
Q ss_pred chhHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhh
Q 023027 34 LFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEE 113 (288)
Q Consensus 34 ~~~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~ 113 (288)
+++++++||.++|++.+++++++|.++..++++++++++||+++|+++++|++++.++|.+|+++.+ ++.++++||+ +
T Consensus 18 ~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~-~ 95 (343)
T 3mva_O 18 KNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWR-K 95 (343)
T ss_dssp --CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHT-T
T ss_pred ccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHH-H
Confidence 4567778888888888888888888887788888888888888888888888888888888888854 7888888887 5
Q ss_pred cCCCCCCHhHHHhhCCc-cceeccccchhhHHHHHHHhccCCC--Cc---------------------------------
Q 023027 114 VLIPFNDLPKSLTRCPR-ILVSDLKTQLRPSFKFLVEFGFKGS--HK--------------------------------- 157 (288)
Q Consensus 114 lG~s~~~i~~il~~~P~-lL~~~~~~~l~~~v~~L~~lG~~~~--~~--------------------------------- 157 (288)
+|++++++.+++.++|+ +++...+++++++++||+++|+++. .+
T Consensus 96 lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~ 175 (343)
T 3mva_O 96 IVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHN 175 (343)
T ss_dssp TSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCC
Confidence 88888888888888888 4444433468888888888877642 12
Q ss_pred --------eeecccceeeecchhcHHHHHHHHH-----------------------------------------HcCCCH
Q 023027 158 --------INCQTTVLLVSSVERTLKPKIDFLK-----------------------------------------NLGLSD 188 (288)
Q Consensus 158 --------li~~~P~lL~~~~~~~l~~kv~~L~-----------------------------------------~lG~s~ 188 (288)
++.++|.+++.+ +++++++++||+ ++||++
T Consensus 176 ~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~ 254 (343)
T 3mva_O 176 DPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTE 254 (343)
T ss_dssp CHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCH
T ss_pred cHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCH
Confidence 344566666666 456666666665 479999
Q ss_pred HHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCcHHHHhhCCcccccccccccHhhHHHHHHCCCCCChh--hhcccC
Q 023027 189 EEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLA--QMLRVS 266 (288)
Q Consensus 189 ~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~~~~l~~~P~~L~~sle~~l~pR~~~L~~~G~~~~l~--~~l~~s 266 (288)
+|+..|+.++|.+|++|.+ +|++|++||.+ ||++.++|+++|.+|+||+| ||+|||++|++.|++++++ ++|++|
T Consensus 255 ~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s 331 (343)
T 3mva_O 255 EEVQKFVLSYPDVIFLAEK-KFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWS 331 (343)
T ss_dssp HHHHHHHHTCGGGGGSCHH-HHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSC
T ss_pred HHHHHHHHhCCchhcccHH-HHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCC
Confidence 9999999999999999999 79999999998 99999999999999999999 9999999999999999988 999999
Q ss_pred HHHHHHHHHHH
Q 023027 267 DGEFNARLIEM 277 (288)
Q Consensus 267 ~~~F~~~~~~~ 277 (288)
|++|.++|.++
T Consensus 332 ~~~F~~~~~~~ 342 (343)
T 3mva_O 332 KKRYEAKLKKL 342 (343)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 99999999764
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=273.01 Aligned_cols=201 Identities=21% Similarity=0.297 Sum_probs=185.8
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhHHH
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFK 145 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~ 145 (288)
+++.++.+|.++||++++|+++++.+|.++.. ++.+++.||. .+|++.++|.++|.++|++|+++++ +++++++
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 47789999999999999999999999999865 4678999999 5999999999999999999999997 5999999
Q ss_pred HHHHhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 146 FLVEFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 146 ~L~~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
||+++|+++. .+++.++|++++++.+ .+..++.+| .++||+.+++..|+.++|+||++|.+ +|++|++||.++||
T Consensus 119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e-~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMG 196 (335)
T ss_dssp HHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTTC
T ss_pred HHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-HHHHHHHHHHHHhC
Confidence 9999999865 5899999999999986 699999998 58999999999999999999999988 89999999999999
Q ss_pred CcHHHHhhCCcccccccccccHhhHHHHHHCCC-------------CCChhhhcccCHHHHHHHHHH
Q 023027 223 GDLDELKKFPQYFSFSLERKIKPRYRILVDHGF-------------KLPLAQMLRVSDGEFNARLIE 276 (288)
Q Consensus 223 ~~~~~l~~~P~~L~~sle~~l~pR~~~L~~~G~-------------~~~l~~~l~~s~~~F~~~~~~ 276 (288)
++.++|++ |.+|+||++ ||+|||.||+.+|. ++++.+++..||++||.++++
T Consensus 197 l~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~ 261 (335)
T 4fp9_B 197 IKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTAC 261 (335)
T ss_dssp CCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSC
T ss_pred CCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHh
Confidence 99999998 999999998 99999999999997 246899999999999988753
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=3.1e-31 Score=236.18 Aligned_cols=209 Identities=22% Similarity=0.301 Sum_probs=190.5
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHH
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFL 147 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L 147 (288)
.++++||.++|++.++|.+....+|.++++++++++.++++||. ++|+++++|++++.++|.+|++++++ ++++++||
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK-DVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH-HHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 47899999999999999887777788899999889999999998 59999999999999999999999997 99999999
Q ss_pred HHhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCc
Q 023027 148 VEFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGD 224 (288)
Q Consensus 148 ~~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~ 224 (288)
+++|+++. .+++.++|.+|+.+++ +++++++|| .++|++.+++.+++.++|+++++|.+ .++++++|+..++|++
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK 161 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence 99999865 5889999999999987 599999999 68999999999999999999999999 8999999987799999
Q ss_pred HHHH----hhCCcccccccccccHhhHHHHH-HCCCC----CChhhhcccCHHHHHHHHHHHHHhh
Q 023027 225 LDEL----KKFPQYFSFSLERKIKPRYRILV-DHGFK----LPLAQMLRVSDGEFNARLIEMRLKL 281 (288)
Q Consensus 225 ~~~l----~~~P~~L~~sle~~l~pR~~~L~-~~G~~----~~l~~~l~~s~~~F~~~~~~~~~~~ 281 (288)
.+++ .++|.+|++|.+ +++++++||. ++|++ .+.+.++.+|-++...|+..++.-+
T Consensus 162 ~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~ 226 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLG 226 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHHHHHHHHhh
Confidence 8864 689999999996 8999999995 58986 3468899999999999987776643
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=205.00 Aligned_cols=177 Identities=16% Similarity=0.265 Sum_probs=159.5
Q ss_pred chhHhHHHHhhCCCChh---hHhhhCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHH
Q 023027 34 LFRQKILHLQALNVNPQ---KALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFL 110 (288)
Q Consensus 34 ~~~~~~~~L~~~G~~~~---~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L 110 (288)
.++..+..|.++||+++ +++.++|.++. .++.+++.||.++|++.++|++++.++|++|+.+++ +|.++++||
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL 120 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHH
Confidence 46677899999999976 57999999864 357899999999999999999999999999999996 799999999
Q ss_pred hhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHHH-HhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCC
Q 023027 111 LEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLV-EFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGL 186 (288)
Q Consensus 111 ~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L~-~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~ 186 (288)
+ ++|++.+++++++.++|++|+++.++ +..++.+|. ++|++.. ..|+.++|.+|.++. +.+++|++|| ..||+
T Consensus 121 ~-~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 121 Q-KLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGI 197 (335)
T ss_dssp H-HTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCC
T ss_pred H-HcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCC
Confidence 9 59999999999999999999999885 899999986 6999965 689999999999996 5799999999 68999
Q ss_pred CHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCc
Q 023027 187 SDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGD 224 (288)
Q Consensus 187 s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~ 224 (288)
+.++|. + |.+|++|++ +|++|+.||. .+|.-
T Consensus 198 ~~~eIv----k-P~~l~ySLe-RIkpRH~fL~-~lG~~ 228 (335)
T 4fp9_B 198 KHPDIV----K-SEYLQYSLT-KIKQRHIYLE-RLGRY 228 (335)
T ss_dssp CHHHHH----H-TTGGGSCHH-HHHHHHHHHH-HHTSC
T ss_pred CHHHcc----c-cchhhccHH-HHHHHHHHHH-HcCCc
Confidence 999973 3 999999999 9999999997 78863
No 6
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.92 E-value=1.4e-25 Score=206.20 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=125.5
Q ss_pred CChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhHH
Q 023027 65 SSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSF 144 (288)
Q Consensus 65 ~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v 144 (288)
+.-+.+++||.++|++.++ ++.++|+++..+++ +..++++||+ ++|+++++|++++.++|.+|+++.+ ++.+++
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~-~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l 90 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLL-SKGASKEVIASIISRYPRAITRTPE-NLSKRW 90 (343)
T ss_dssp ---CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHH
T ss_pred cccHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHH-HcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHH
Confidence 3467799999999999665 56789999999985 7999999999 6999999999999999999999965 699999
Q ss_pred HHHHHhccCCC--Cceeecccceeeecch-hcHHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHH
Q 023027 145 KFLVEFGFKGS--HKINCQTTVLLVSSVE-RTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 145 ~~L~~lG~~~~--~~li~~~P~lL~~~~~-~~l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
+||+++|+++. .+++.++|.++..+.+ ++++++++||+++|++.+++.+++.++|++|+++++ .++++++|+.
T Consensus 91 ~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~ 166 (343)
T 3mva_O 91 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQ 166 (343)
T ss_dssp HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHH
Confidence 99999999865 5889999995444444 489999999999999999999999999999999987 4466666664
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=103.52 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=112.4
Q ss_pred cCCCCCCHhHHHhhCCccceeccccchhhHHHHHHHhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCCCHHH
Q 023027 114 VLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGLSDEE 190 (288)
Q Consensus 114 lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~s~~~ 190 (288)
+|++++-+--++.+.|++|...+- .++.+-.||+.+|+.+. .+++.-+|.++...- ..+...+..| ..+-|+.++
T Consensus 43 lglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllkekclftvqq 120 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQ 120 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHHHSCCCHHH
T ss_pred hcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHHhHHhhHHH
Confidence 455555555555555555544443 24445555555444432 234444555554442 3466677777 467799999
Q ss_pred HHHHHHhCCceeecCcccchhhHHHHHHHhhcCcHHHHhhCCcccccccccccHhhHHHHHHCCC-------------CC
Q 023027 191 VERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGF-------------KL 257 (288)
Q Consensus 191 v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~~~~l~~~P~~L~~sle~~l~pR~~~L~~~G~-------------~~ 257 (288)
+.+++..||.+|.-+.. .++.|+.|-.-+||...-+|++. .+|.||+. +|+.|+-+|...|. ++
T Consensus 121 vtkilhscpsvlredlg-qleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnp 197 (239)
T 4fzv_B 121 VTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNP 197 (239)
T ss_dssp HHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCC
T ss_pred HHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCCh
Confidence 99999999999999987 89999999888999999999985 88999998 69999999999886 13
Q ss_pred ChhhhcccCHHHHHHH
Q 023027 258 PLAQMLRVSDGEFNAR 273 (288)
Q Consensus 258 ~l~~~l~~s~~~F~~~ 273 (288)
-+.+++..|+.+|.++
T Consensus 198 llkdilrvseaeflar 213 (239)
T 4fzv_B 198 LLKDILRVSEAEFLAR 213 (239)
T ss_dssp CHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 4678999999999876
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.12 E-value=4e-06 Score=66.21 Aligned_cols=147 Identities=19% Similarity=0.311 Sum_probs=125.6
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhHHH
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFK 145 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~ 145 (288)
.+...+.-+.-+|+.++-++-++.+.|.++...+. .++.+-.|++ .+|+.+..+.+++..+|.++++... ++...+.
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvr 108 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVR 108 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHH
Confidence 34556777778999999999999999999999985 7899999999 6999999999999999999999965 5888999
Q ss_pred HHHH-hccCC--CCceeecccceeeecchhcHHHHHHHH-HHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhh
Q 023027 146 FLVE-FGFKG--SHKINCQTTVLLVSSVERTLKPKIDFL-KNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEM 221 (288)
Q Consensus 146 ~L~~-lG~~~--~~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~ 221 (288)
.|++ +-|+- ..+++..+|.++..+. ..++-|++|- -.||+.+.|+. + ...|.||.. +|+.++-||. ++
T Consensus 109 llkekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdiv---k--seylqyslt-kikqrhiyle-rl 180 (239)
T 4fzv_B 109 LLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIV---K--SEYLQYSLT-KIKQRHIYLE-RL 180 (239)
T ss_dssp HHHHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHH---H--TTGGGSCHH-HHHHHHHHHH-HH
T ss_pred HHHHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchh---H--HHHHHHHHH-HHHHHHhHHH-Hh
Confidence 9987 55542 2478899999999887 5799999987 79999999973 3 347899998 8999999996 67
Q ss_pred cC
Q 023027 222 KG 223 (288)
Q Consensus 222 g~ 223 (288)
|.
T Consensus 181 gr 182 (239)
T 4fzv_B 181 GR 182 (239)
T ss_dssp TC
T ss_pred cc
Confidence 75
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=86.97 E-value=0.7 Score=29.85 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=27.8
Q ss_pred hhCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhC
Q 023027 54 HQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMH 91 (288)
Q Consensus 54 ~~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~ 91 (288)
..+|.|-..+ +..+++||++.|++.++|...+.+.
T Consensus 20 L~dp~V~~sp---~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 20 LQNSRVRQSP---LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHCTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hCChhhhcCC---HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3466665444 6889999999999999999988763
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=86.51 E-value=1.4 Score=33.24 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=64.2
Q ss_pred hHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHH------hCCCChhHHHHHHHhCCcccccCCCCChHHHHHH
Q 023027 36 RQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLL------SLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDF 109 (288)
Q Consensus 36 ~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~------~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~ 109 (288)
++.++.|.++||+..++.+. +..+. ++.+..++||. +.|++..++...+..+..--.... .-...+.-
T Consensus 9 ~~~v~~l~~MGFp~~~~~kA---l~~~g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~--~~~~~v~~ 82 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRA---MKAAG-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM--EFLQLMSK 82 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHH---HHHHC-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH---HHHHC-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccc--cCHHHHHH
Confidence 45688899999998764433 11122 25677777764 468888888888876532111110 01234667
Q ss_pred HhhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHHHH
Q 023027 110 LLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVE 149 (288)
Q Consensus 110 L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L~~ 149 (288)
|. +.||+.+.+.+.+..+- +++..-++||..
T Consensus 83 L~-eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 83 FK-EMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HH-HTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HH-HcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 77 69999999999988643 357788888865
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=81.21 E-value=1.4 Score=40.03 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHh
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQE 220 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 220 (288)
+..|+-|..|||+...+.+.+..| +++...-.+||.+.
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~--------~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFAC--------EKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSS--------SSCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHhhC
Confidence 456677777777777765544443 22344556666543
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=80.95 E-value=15 Score=27.46 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 176 PKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 176 ~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
..+.-|.+|||+.+++++.++.+ ++.+..-+++|....|
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence 46777889999999998888776 3468888888876655
No 13
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=80.73 E-value=4.6 Score=25.67 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=29.2
Q ss_pred CChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCC
Q 023027 65 SSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLI 116 (288)
Q Consensus 65 ~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~ 116 (288)
+.+.+.|+-|.++|++++++.+.+...- +++.-.-.+|+ ++.+
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~--------nnve~AaniLl-ef~~ 51 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIAQ--------NNVEVARSILR-EFAF 51 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHH-HHCC
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHH-HhcC
Confidence 3556788888888888888888777652 35555666776 4654
No 14
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=80.56 E-value=2.2 Score=27.51 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=26.1
Q ss_pred ccceeeecchhcHHHHHHHHHHcCCCHHHHHHHHHhC
Q 023027 162 TTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRS 198 (288)
Q Consensus 162 ~P~lL~~~~~~~l~~kv~~L~~lG~s~~~v~~~l~~~ 198 (288)
+|.+-. ..+..|++||++-|++.+||...+.+.
T Consensus 22 dp~V~~----sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 22 NSRVRQ----SPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred Chhhhc----CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 455553 347799999999999999999888763
No 15
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=80.36 E-value=1.7 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred hCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhC
Q 023027 55 QNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMH 91 (288)
Q Consensus 55 ~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~ 91 (288)
.+|.|-..+ +..+++||++.|++.++|...+.+.
T Consensus 26 qdp~V~~sp---~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQSP---LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhCC---HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456654443 6889999999999999999999885
No 16
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.21 E-value=5.5 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=27.3
Q ss_pred hHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 67 LLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 67 l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
-.+.++-|.++||+++++.+.+..+- .++...++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 45677888888888888888777652 245577888864
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=74.37 E-value=4.2 Score=27.60 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=26.4
Q ss_pred ccceeeecchhcHHHHHHHHHHcCCCHHHHHHHHHhC
Q 023027 162 TTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRS 198 (288)
Q Consensus 162 ~P~lL~~~~~~~l~~kv~~L~~lG~s~~~v~~~l~~~ 198 (288)
+|.+-. ..+..|++||++-|++.+||...+.+.
T Consensus 27 dp~V~~----sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 27 NSRVRQ----SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp STTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred Chhhhh----CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 566653 247789999999999999999988874
No 18
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=73.72 E-value=3.3 Score=26.42 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=5.8
Q ss_pred hHhHHHHhhCCC
Q 023027 36 RQKILHLQALNV 47 (288)
Q Consensus 36 ~~~~~~L~~~G~ 47 (288)
.++++.|.++||
T Consensus 12 ~~~l~~L~~MGF 23 (53)
T 2knz_A 12 QQQLEQLNSMGF 23 (53)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHcCC
Confidence 444444555555
No 19
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=70.81 E-value=3 Score=37.85 Aligned_cols=19 Identities=0% Similarity=0.225 Sum_probs=15.9
Q ss_pred chhHhHHHHhhCCCChhhH
Q 023027 34 LFRQKILHLQALNVNPQKA 52 (288)
Q Consensus 34 ~~~~~~~~L~~~G~~~~~l 52 (288)
.+.+.|+.|.++||+..++
T Consensus 167 ~~~~~i~~l~~MGf~~~~~ 185 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERV 185 (368)
T ss_dssp THHHHHHHHHTTTCCSHHH
T ss_pred chHHHHHHHHHcCCCHHHH
Confidence 4778899999999998654
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.78 E-value=11 Score=23.45 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHH
Q 023027 173 TLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQ 219 (288)
Q Consensus 173 ~l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 219 (288)
.-..+++-|.+|||+++++...+..+- .++..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 356788999999999999988887652 246677888864
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=68.77 E-value=13 Score=23.56 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=30.2
Q ss_pred ChHHHHHHHHhCCC-ChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 66 SLLSLEHYLLSLGL-SRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 66 ~l~~~v~~L~~~Gl-s~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
...+.++-|.++|| +++...+.+..+- +++...++||.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~--------gnve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATG--------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 46778999999999 7777777776552 367788999974
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=66.88 E-value=10 Score=22.62 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
.+.++-|.++||+++++.+.+..+- .++...++||.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCN--------WDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHT--------SCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------cCHHHHHHHHH
Confidence 3467777788888877777666541 24556677765
No 23
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.44 E-value=14 Score=25.84 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 174 LKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 174 l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
-..+|+-|.+|||+++++...+..+- .++..-++||....|
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 35788999999999999988887662 258888999987766
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=64.30 E-value=18 Score=20.89 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhC
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMH 91 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~ 91 (288)
.+.++-|.++||++++..+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456677777777777776665554
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=64.17 E-value=13 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
..++.|+-|.++||+++++...+..+- .++...++||.
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~--------~nve~Ave~Ll 65 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILM 65 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 345666777777777777766666541 24556667765
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.97 E-value=15 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.421 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHh
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQE 220 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 220 (288)
..+|+-|.+|||+.+++...+..+ .+++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 467888999999999987777766 22577888998754
No 27
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.87 E-value=30 Score=24.93 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCCCCCCCCcCCCCCcccchhHhHHHHhhCCCCh---hhHhhhCCCCCCCCCCChHHHHHHHHhCCCCh
Q 023027 16 TSVQPPSHISASTNDAGLLFRQKILHLQALNVNP---QKALHQNPNFRCTPLSSLLSLEHYLLSLGLSR 81 (288)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~G~~~---~~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~ 81 (288)
.+...|+|-....+..|. .++..+||.++|++. .+.+..+ .|-....-.+. .+-|+++|++.
T Consensus 14 ~~~~~~~~~~~~~v~~Ws-~~~V~~WL~~lgl~~~~y~~~F~~~-~I~G~~Ll~Lt--~~dLkeLGI~~ 78 (103)
T 2e8o_A 14 EADWSPGLELHPDYKTWG-PEQVCSFLRRGGFEEPVLLKNIREN-EITGALLPCLD--ESRFENLGVSS 78 (103)
T ss_dssp CCSCCSCCCCCSCGGGCH-HHHHHHHHHHHTCCCHHHHHHHHHT-TCCTTTTTTCC--HHHHHHTTCCC
T ss_pred cccCCCccccccChhhCC-HHHHHHHHHHcCCChHHHHHHHHHc-CCCHHHHHhCC--HHHHHHcCCCC
Confidence 344444455577777783 456779999999974 2333332 12111111122 45577788854
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.74 E-value=21 Score=22.72 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=30.5
Q ss_pred CChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcC
Q 023027 65 SSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL 115 (288)
Q Consensus 65 ~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG 115 (288)
+.....|+-|.++||+++++.+.+...- .++.-.-.+|+ ++.
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~--------nnve~Aa~iL~-ef~ 48 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAH--------NNIEMAKNILR-EFS 48 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTT--------TCHHHHHHHHH-HHT
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhc--------CCHHHHHHHHH-Hhc
Confidence 4566778899999999999888877652 35666667777 454
No 29
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.79 E-value=7.7 Score=27.35 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=9.5
Q ss_pred HHHHHHHhCCCChhHHHHHH
Q 023027 69 SLEHYLLSLGLSRPAVGRIL 88 (288)
Q Consensus 69 ~~v~~L~~~Gls~~~i~~ii 88 (288)
+.++-|.++||+++.+.+.+
T Consensus 23 ~~I~qL~~MGF~~~~a~~AL 42 (85)
T 2dkl_A 23 RLIKQLTDMGFPREPAEEAL 42 (85)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34444444555554444444
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.47 E-value=19 Score=23.74 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
...++-|.++||+++++.+.+..+- .++...++||.+
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~--------~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG--------NNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 4567778888888887777766652 246677777764
No 31
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.37 E-value=15 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=30.0
Q ss_pred CcccchhHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHHh
Q 023027 30 DAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLS 76 (288)
Q Consensus 30 ~~~~~~~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~~ 76 (288)
......+++|+.|.++||+..+++.. |.....+++..++||.+
T Consensus 24 ~~~~~~ee~I~~L~eMGF~r~~a~~A----L~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAMGFDRTQVEVA----LAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCSCCCHHHHHHHHTTTCCHHHHHHH----HHHHTSCHHHHHHHHHT
T ss_pred cCCcccHHHHHHHHHcCCCHHHHHHH----HHHhCCCHHHHHHHHHH
Confidence 33446688999999999998765433 12233468888888876
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.07 E-value=17 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 174 LKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 174 l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
-..+++-|.+|||+.++..+.+..+- .+++.-++||.....
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 35678889999999999988888762 247788999986543
No 33
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=59.88 E-value=15 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=26.5
Q ss_pred hhcHHHHHHHHHHcCC-CHHHHHHHHHhCCceeecCcccchhhHHHHHH
Q 023027 171 ERTLKPKIDFLKNLGL-SDEEVERMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 171 ~~~l~~kv~~L~~lG~-s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
+.....+++-|.+||| +++.....+..+ ..++..-++||.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4567788999999999 666655555443 124666677664
No 34
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.55 E-value=3.6 Score=26.33 Aligned_cols=43 Identities=16% Similarity=0.039 Sum_probs=20.7
Q ss_pred cchhHhHHHHhhCCCChhhHhhhCCCCCC-CCCCChHHHHHHHHhCCC
Q 023027 33 LLFRQKILHLQALNVNPQKALHQNPNFRC-TPLSSLLSLEHYLLSLGL 79 (288)
Q Consensus 33 ~~~~~~~~~L~~~G~~~~~l~~~~P~ll~-~s~~~l~~~v~~L~~~Gl 79 (288)
..+++.++-|.++||+.+++... +. .....+++.++||..++.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~A----lk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRA----LKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHH----HHHHTSCCHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHcCCCHHHHHHH----HHHhCcccHHHHHHHHHHhcC
Confidence 34455566666666665542211 00 111235666666655544
No 35
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=58.13 E-value=23 Score=22.23 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=21.0
Q ss_pred ChHHHHHHHHhCCC-ChhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 66 SLLSLEHYLLSLGL-SRPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 66 ~l~~~v~~L~~~Gl-s~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
...+.++-|.++|| +++.+.+.+..+- .++...++||.
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~--------gn~e~A~e~L~ 49 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATG--------GDINAAIERLL 49 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHT--------TCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 34566666777777 5555555554431 24555666654
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.53 E-value=20 Score=24.35 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHh
Q 023027 174 LKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQE 220 (288)
Q Consensus 174 l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 220 (288)
-..+|+-|.+|||+.+++.+.++.+- +++..-++||.+.
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHhC
Confidence 35678889999999999888777652 2577888888754
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.51 E-value=14 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhh
Q 023027 174 LKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEM 221 (288)
Q Consensus 174 l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~ 221 (288)
=...|+-+.+|||+.++..+.+++. .++++.-.+||..++
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 3466888999999999998888776 337888899987654
No 38
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.33 E-value=39 Score=23.57 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcC
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL 115 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG 115 (288)
.+.++-|.++||+++++.+.+..+- .++...++||.+..|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 5567777777777777777766552 245667777764333
No 39
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.06 E-value=32 Score=23.94 Aligned_cols=40 Identities=8% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
...++-|.+|||+.+...+.+..+ .++++.-++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 466788899999999988877765 1257788999987654
No 40
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.10 E-value=42 Score=22.84 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=20.1
Q ss_pred ChHHHHHHHHhCCCC-hhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 66 SLLSLEHYLLSLGLS-RPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls-~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
.....++-|.++||+ ++.+.+.+... ..++...++||.
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~ 66 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLL 66 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 445566666666663 34444444433 134556666665
No 41
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.05 E-value=21 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=27.0
Q ss_pred hhcHHHHHHHHHHcCCCHHH-HHHHHHhCCceeecCcccchhhHHHHHHH
Q 023027 171 ERTLKPKIDFLKNLGLSDEE-VERMVIRSPGLLTFSVENNLVPKVDFFIQ 219 (288)
Q Consensus 171 ~~~l~~kv~~L~~lG~s~~~-v~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 219 (288)
+.....+++-|.+|||++++ ..+.+..+ ..++..-+++|..
T Consensus 6 ~~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 6 SGHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQ 47 (54)
T ss_dssp CCSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 34567888999999997765 34444432 1357777888864
No 42
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.93 E-value=19 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
.+.|+-|.++||+.++..+.+.... .++...++||.+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~--------~NvErAaDWLFS 56 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 4468888899999999988888763 467788888875
No 43
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.51 E-value=42 Score=23.48 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=33.6
Q ss_pred CCcccchhHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHHhCCCCh
Q 023027 29 NDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSR 81 (288)
Q Consensus 29 ~~~~~~~~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~ 81 (288)
+++| ...++|+.|.++||+..++.... ...-.+++..++||.+...+.
T Consensus 16 ~~~~-~n~~~I~qL~~MGF~~~~a~~AL----~~~n~n~e~A~ewL~~h~~D~ 63 (85)
T 2dkl_A 16 DEAW-IMSRLIKQLTDMGFPREPAEEAL----KSNNMNLDQAMSALLEKKVDV 63 (85)
T ss_dssp CHHH-HHHHHHHHHHHHTCCHHHHHHHH----HHTTSCHHHHHHHHHTTSCCS
T ss_pred Cccc-cCHHHHHHHHHcCCCHHHHHHHH----HHcCCCHHHHHHHHHHCcCCc
Confidence 4444 45788999999999987765543 233346888899988765543
No 44
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.15 E-value=33 Score=23.21 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
...++-|.++||+++++.+.+..+- .++...++||.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~ 65 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 3455666666666666665555442 23445566665
No 45
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.64 E-value=29 Score=22.61 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
...++-|.++||++++..+.+..+- .++...++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 5567778888888888877777662 235567777764
No 46
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=45.23 E-value=28 Score=21.38 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHh
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLL 111 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~ 111 (288)
.++..++-|.+.|++.+++.+.+...- .++.-.-+.|+
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~--------Nnie~A~nIL~ 40 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQ--------NNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTT--------TCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhh--------ccHHHHHHHHH
Confidence 367788999999999999998877652 24555555665
No 47
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.18 E-value=38 Score=22.62 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=29.5
Q ss_pred cchhcHHHHHHHHHHcCCCHHHH-HHHHHhCCceeecCcccchhhHHHHHHH
Q 023027 169 SVERTLKPKIDFLKNLGLSDEEV-ERMVIRSPGLLTFSVENNLVPKVDFFIQ 219 (288)
Q Consensus 169 ~~~~~l~~kv~~L~~lG~s~~~v-~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 219 (288)
.++......++-|.+|||++.+- .+.+... - .++..-+++|..
T Consensus 14 ~pe~~y~~ql~qL~~MGF~d~~an~~AL~at-------~-Gnve~Ave~L~~ 57 (67)
T 2dna_A 14 APEVRFSKEMECLQAMGFVNYNANLQALIAT-------D-GDTNAAIYKLKS 57 (67)
T ss_dssp CHHHHTHHHHHHHHHHTCCCHHHHHHHHHHT-------T-SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHc-------C-CCHHHHHHHHHh
Confidence 34667888999999999976643 3333332 2 368888888874
No 48
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=43.47 E-value=36 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=27.9
Q ss_pred chhcHHHHHHHHHHcCCCH-HHHHHHHHhCCceeecCcccchhhHHHHHHH
Q 023027 170 VERTLKPKIDFLKNLGLSD-EEVERMVIRSPGLLTFSVENNLVPKVDFFIQ 219 (288)
Q Consensus 170 ~~~~l~~kv~~L~~lG~s~-~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 219 (288)
++.....+++-|.+|||++ +.+.+.+... ..++..-+++|..
T Consensus 13 pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 13 PEERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4566788999999999964 4544444432 1257777888764
No 49
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.12 E-value=39 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
...++-|.+|||+.+...+.+..+- + +.++.-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~-----n--~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTG-----N--SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHT-----S--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-----C--CCHHHHHHHHHhCCC
Confidence 4567888899999999887777652 1 148888999987654
No 50
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.02 E-value=19 Score=21.96 Aligned_cols=35 Identities=9% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHH
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
..+++-|.+|||+.++....+..+ . +++.-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~-----n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S-----TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C-----SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C-----CHHHHHHHHH
Confidence 467888999999999988877775 1 3556677775
No 51
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.62 E-value=34 Score=22.48 Aligned_cols=39 Identities=13% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhh
Q 023027 176 PKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEM 221 (288)
Q Consensus 176 ~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~ 221 (288)
..++-|.+|||+.++..+.+..+-. ++++.-++||.+.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhCC
Confidence 3567788999999998887776532 25778888887543
No 52
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=41.96 E-value=75 Score=22.18 Aligned_cols=46 Identities=4% Similarity=0.058 Sum_probs=33.8
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcC
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL 115 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG 115 (288)
.+..+-+|-+.+|+++.+|..|-..||+ +..+.....+.-|....|
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~~~~~~----d~~Eq~~qmL~~W~~~~g 56 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIMHDSIQ----DTAEQKVQLLLCWYQSHG 56 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHTCTT----CCTTHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHcCCCHhHHHHHHHhCCC----ChHHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999985 222345566666664455
No 53
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=40.30 E-value=9.1 Score=26.05 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=7.9
Q ss_pred HHHHHHhCCCChhH
Q 023027 70 LEHYLLSLGLSRPA 83 (288)
Q Consensus 70 ~v~~L~~~Gls~~~ 83 (288)
.++|+.+.|++...
T Consensus 5 Wf~FFl~aGv~~~~ 18 (72)
T 3idw_A 5 WFEFFLNCGVDVSN 18 (72)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCChHH
Confidence 45566666665543
No 54
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=38.22 E-value=35 Score=20.77 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.1
Q ss_pred chhcHHHHHHHHHHcCCCHH-HHHHHHHhCCceeecCcccchhhHHHHHH
Q 023027 170 VERTLKPKIDFLKNLGLSDE-EVERMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 170 ~~~~l~~kv~~L~~lG~s~~-~v~~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
++.....+++-|.+|||+++ .+...+... ..++..-+++|.
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~--------~gnv~~Ave~L~ 44 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLL 44 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 34567889999999999754 444444432 125666677764
No 55
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=36.78 E-value=12 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHH
Q 023027 176 PKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 176 ~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
..|+-|.+|||++..+.+.+..+- ++...-.++|.
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~--------~n~e~A~~~Lf 40 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACE--------KNENLAANFLL 40 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTT--------SCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 456778899999999877666652 24555566654
No 56
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=36.50 E-value=24 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=18.7
Q ss_pred hHHHHHHHHhCCCChhHHHHHHHhC
Q 023027 67 LLSLEHYLLSLGLSRPAVGRILDMH 91 (288)
Q Consensus 67 l~~~v~~L~~~Gls~~~i~~ii~~~ 91 (288)
..+.++-|.++|+++.++.+++..-
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567788888888888888777653
No 57
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=35.29 E-value=57 Score=24.01 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=47.8
Q ss_pred cchhHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 33 LLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 33 ~~~~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
..++.+++|+..+. ..+.+.....++.|.+.|+.+..+++++.-+|. +.+ .++..+.-+.
T Consensus 32 ~~~~ktl~y~~~Fs--------------k~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~----~~d-Elrali~s~e- 91 (113)
T 4ayb_F 32 NLLQRTYDYLNSVE--------------KCDAESAQKVVEELSSIISREDVRAVLASICPI----TPD-EVRSILIMDS- 91 (113)
T ss_dssp TTHHHHHHHTTTTC--------------SSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCCC----SSC-CCCTTTTTTC-
T ss_pred HHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC----CHH-HHHHHHHhhc-
Confidence 35567778877665 234455677889999999999999999999995 222 2333222232
Q ss_pred hcCCCCCCHhHHHh
Q 023027 113 EVLIPFNDLPKSLT 126 (288)
Q Consensus 113 ~lG~s~~~i~~il~ 126 (288)
...++++++.+++.
T Consensus 92 ~~~~~deeL~~IL~ 105 (113)
T 4ayb_F 92 NRTYTSEDIQKIID 105 (113)
T ss_dssp CCCCCCTHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 24456666666553
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=33.36 E-value=57 Score=20.81 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=30.0
Q ss_pred hHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcC
Q 023027 67 LLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL 115 (288)
Q Consensus 67 l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG 115 (288)
.+..++-|.++|++++++.+.+...- +++.-.-++|+ ++.
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~--------Ndv~~AtNiLl-Ef~ 46 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQ--------NNIEMAKNILR-EFV 46 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTT--------TCSHHHHHHHH-HSC
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhc--------ccHHHHHHHHH-HHH
Confidence 56788999999999999998887652 24555567777 465
No 59
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=33.27 E-value=22 Score=27.20 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHh
Q 023027 56 NPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLT 126 (288)
Q Consensus 56 ~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~ 126 (288)
.|.-...+.+.+...++.|..+|+++.++..|+.-+|. +.. .+...|+-..+ -|+++++..++.
T Consensus 66 ~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~----t~v-el~~iIEe~e~--Rfsee~ie~IL~ 129 (136)
T 3ayh_A 66 QGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPS----SVP-ELYACIEGIEE--RFKEEDIFKLVE 129 (136)
T ss_dssp TTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCC----SHH-HHHHHSTTHHH--HHTTTTHHHHHH
T ss_pred CCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCC----CHH-HHHHHHHhccc--CCCHHHHHHHHH
Confidence 34433345667888889999999999999999999994 111 23334433322 256777777764
No 60
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=33.12 E-value=44 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHhCCCChhHHHHHHHhCCc
Q 023027 62 TPLSSLLSLEHYLLSLGLSRPAVGRILDMHPK 93 (288)
Q Consensus 62 ~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~P~ 93 (288)
.+.+.+..+.+.|.++|+++.++.+|+.-+|.
T Consensus 85 k~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 85 KNRETIASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp CSHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 35667888889999999999999999999995
No 61
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.41 E-value=68 Score=21.00 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 177 KIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 177 kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
.++-|.+|||+.+.+.+.+..+- + +.++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~-----n--~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATG-----R--KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHT-----S--CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-----C--CCHHHHHHHHHhCCC
Confidence 45678899999988877666441 1 258889999986653
No 62
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=28.14 E-value=90 Score=25.24 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=11.7
Q ss_pred HHHHHHHhhhcCCCCCCHhHHHhhC
Q 023027 104 EPIIDFLLEEVLIPFNDLPKSLTRC 128 (288)
Q Consensus 104 ~~~l~~L~~~lG~s~~~i~~il~~~ 128 (288)
..+|+-|. +.||+++++..++.++
T Consensus 164 eekV~~l~-~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 164 TKKIENLC-AMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHc
Confidence 34444444 3555555555555444
No 63
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.83 E-value=48 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHh
Q 023027 176 PKIDFLKNLGLSDEEVERMVIR 197 (288)
Q Consensus 176 ~kv~~L~~lG~s~~~v~~~l~~ 197 (288)
..|.+++++|||-++|+.++..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 4577788999999999998864
No 64
>4dnc_D MALE-specific lethal 1 homolog; histone acetyltransferase, MOF, MSL, NSL, transcription; HET: ALY; 2.05A {Homo sapiens}
Probab=27.60 E-value=56 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.7
Q ss_pred hhcccCHHHHHHHHHHHHHhhhhhhc
Q 023027 261 QMLRVSDGEFNARLIEMRLKLAERSS 286 (288)
Q Consensus 261 ~~l~~s~~~F~~~~~~~~~~~~~~~~ 286 (288)
.+=+.||+.|..++.+....+..||.
T Consensus 22 ~~E~LsD~~F~kRH~k~E~~E~~Rkr 47 (48)
T 4dnc_D 22 LLENLDDSVFSKRHAKLELDEKRRKR 47 (48)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999988888877763
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=27.49 E-value=38 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=27.6
Q ss_pred CChHHHHHHHHhCCCCh-hHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 65 SSLLSLEHYLLSLGLSR-PAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 65 ~~l~~~v~~L~~~Gls~-~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
....+.++-|+++||++ +...+++... ..++...+++|.+
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t--------~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQAT--------GGDIQAALELIFA 104 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45678888999999865 4555555544 1467788888874
No 66
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.12 E-value=2.4e+02 Score=21.75 Aligned_cols=150 Identities=7% Similarity=-0.018 Sum_probs=79.4
Q ss_pred CCcCCCCCcccchhHhHHHHhhCCCChhhHhhhCCCCCCCCCCChHHHHHHHHhCCCChh-HHHHHHHhCCcccccCCCC
Q 023027 23 HISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRP-AVGRILDMHPKLLTADIPR 101 (288)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~L~~~G~~~~~l~~~~P~ll~~s~~~l~~~v~~L~~~Gls~~-~i~~ii~~~P~lL~~~~~~ 101 (288)
|-.+..|... +....+.||..-.-+..++..+--. -..+.+.+..+++.|.+.|+-.+ ..+..+.+.- +- ...
T Consensus 9 ~~~~~~~~~~-a~~~Al~~Ls~r~~s~~EL~~KL~~-kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~-~~-~~~-- 82 (162)
T 3dfg_A 9 KRGRRFKEQT-PVQRALGLLVHREHSKKELNRKLQA-RGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNR-AS-SGY-- 82 (162)
T ss_dssp --------CC-HHHHHHHHHHHSCCCHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-HT-TTC--
T ss_pred CCCCcchHHH-HHHHHHHHhhchhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HH-ccc--
Confidence 4444444443 4456678887777776654322100 13556679999999999887554 4455444321 11 111
Q ss_pred ChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHHHH-hccCCCCceeecccceeeecchhcHHHHHHH
Q 023027 102 DLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVE-FGFKGSHKINCQTTVLLVSSVERTLKPKIDF 180 (288)
Q Consensus 102 ~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L~~-lG~~~~~~li~~~P~lL~~~~~~~l~~kv~~ 180 (288)
--.....-|+ .-|++.+.|...+..... + ........++. +|-. .| .+ .+.-...+.|
T Consensus 83 G~~~I~~eL~-~KGI~~~~I~~al~~~~~------d-e~e~a~~l~~Kk~~~~--------~~----~~-~~~k~K~~~~ 141 (162)
T 3dfg_A 83 GPLHIRAELG-THGLDSDAVSAAMATFEG------D-WTENALDLIRRRFGED--------GP----VD-LAQRRKAADL 141 (162)
T ss_dssp CHHHHHHHHH-HTTCCHHHHHHHHTTCCS------C-HHHHHHHHHHHHHCTT--------CC----CS-HHHHHHHHHH
T ss_pred cHHHHHHHHH-HcCCCHHHHHHHHHhCcH------h-HHHHHHHHHHHhcCCC--------CC----CC-HHHHHHHHHH
Confidence 1223335566 489999999888877531 1 12222333332 3310 01 11 1223345688
Q ss_pred HHHcCCCHHHHHHHHHhCC
Q 023027 181 LKNLGLSDEEVERMVIRSP 199 (288)
Q Consensus 181 L~~lG~s~~~v~~~l~~~P 199 (288)
|..=||+.+.|...+...|
T Consensus 142 L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 142 LARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHTTCCHHHHHHHTTC--
T ss_pred HHHCCCCHHHHHHHHhcCc
Confidence 9899999999988765443
No 67
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.45 E-value=75 Score=20.22 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=23.8
Q ss_pred hhcHHHHHHHHHHcCCCHHHHH-HHHHhCCceeecCcccchhhHHHHHH
Q 023027 171 ERTLKPKIDFLKNLGLSDEEVE-RMVIRSPGLLTFSVENNLVPKVDFFI 218 (288)
Q Consensus 171 ~~~l~~kv~~L~~lG~s~~~v~-~~l~~~P~iL~~s~e~~l~~k~~fL~ 218 (288)
++.-.++++-|.+|||.+.+.. .++.++ -. ++..-++.|.
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~-------~g-nv~~aI~~Ll 46 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKH-------NY-NILQVVTELL 46 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTT-------TT-CHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHc-------CC-CHHHHHHHHH
Confidence 4556678888889998665533 222222 22 5666666665
No 68
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.08 E-value=95 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.0
Q ss_pred ChHHHHHHHHhC-CCChhHHHHHHHhCCcccccCCCCChHHHHHHHhh
Q 023027 66 SLLSLEHYLLSL-GLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLE 112 (288)
Q Consensus 66 ~l~~~v~~L~~~-Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~ 112 (288)
..++.|..|.++ |++.+++..++..+ ..++...+.+|.+
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~--------ngDl~~AI~~Lle 77 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDC--------NGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 467889999997 99999999988877 2467788988874
No 69
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=23.57 E-value=1.8e+02 Score=21.40 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=54.0
Q ss_pred hHHHHHHHHh---CCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhH
Q 023027 67 LLSLEHYLLS---LGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPS 143 (288)
Q Consensus 67 l~~~v~~L~~---~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~ 143 (288)
+..+++||+. -|+...+-.-++.--.+=|+. +.+...+..|..+-.++..+|+..|++--.-+-.. ..+..+
T Consensus 10 l~siv~WLRAGYP~GVP~~Dy~PLLALL~r~Ltd---eev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~--eDI~RV 84 (112)
T 2lky_A 10 LAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTN---DEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPRE--EDIERV 84 (112)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCH--HHHHHH
T ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHcccCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCH--HHHHHH
Confidence 6778888885 588888776666644443444 35777777776544578888888887654433333 346666
Q ss_pred HHHHHHhccC
Q 023027 144 FKFLVEFGFK 153 (288)
Q Consensus 144 v~~L~~lG~~ 153 (288)
-+.|...|.+
T Consensus 85 ~arLaa~GWP 94 (112)
T 2lky_A 85 RRHLALQGWP 94 (112)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHhcCCC
Confidence 6777777765
No 70
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=23.01 E-value=2.2e+02 Score=20.60 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=51.7
Q ss_pred hHHHHHHHHh---CCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHHhhCCccceeccccchhhH
Q 023027 67 LLSLEHYLLS---LGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPS 143 (288)
Q Consensus 67 l~~~v~~L~~---~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~ 143 (288)
+..++.||+. -|++..+-.-++.--.+-|+. +.+...+..|..+-.++..+|+..|++--.-+-.. ..+..+
T Consensus 8 l~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltd---eev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~--eDI~RV 82 (103)
T 2kvc_A 8 LTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSH---DEVKAVANELMRLGDFDQIDIGVVITHFTDELPSP--EDVERV 82 (103)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCH---HHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCH--HHHHHH
T ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHhccCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCH--HHHHHH
Confidence 4567788875 588887766666544333443 35777777766443478888888887755544333 346666
Q ss_pred HHHHHHhccC
Q 023027 144 FKFLVEFGFK 153 (288)
Q Consensus 144 v~~L~~lG~~ 153 (288)
-+-|...|.+
T Consensus 83 ~arLaa~GWP 92 (103)
T 2kvc_A 83 RARLAAQGWP 92 (103)
T ss_dssp HHHHGGGCCC
T ss_pred HHHHHhcCCC
Confidence 6667666665
No 71
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=22.75 E-value=88 Score=23.18 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.8
Q ss_pred ChHHHHHHHHhCCCChhHHHHHHHhCCc
Q 023027 66 SLLSLEHYLLSLGLSRPAVGRILDMHPK 93 (288)
Q Consensus 66 ~l~~~v~~L~~~Gls~~~i~~ii~~~P~ 93 (288)
.+..+-.|-+.+|++..+|..|-..||+
T Consensus 19 ~~~~wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 19 TLSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHcCCC
Confidence 3677888999999999999999999985
No 72
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.70 E-value=56 Score=21.33 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 177 KIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 177 kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
.++-|.+|||+.+...+.+..+ .+ ++++.-++||.+...
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHhCCC
Confidence 5677889999999987777643 11 258888999986553
No 73
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=21.57 E-value=60 Score=25.30 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.0
Q ss_pred hCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHhC
Q 023027 55 QNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMH 91 (288)
Q Consensus 55 ~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~~ 91 (288)
..|.=+..+.+++++.+--|..-|+++++|+-++.-.
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 4677778888899999999999999999999988753
No 74
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.39 E-value=69 Score=23.33 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHc-CCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHh
Q 023027 173 TLKPKIDFLKNL-GLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQE 220 (288)
Q Consensus 173 ~l~~kv~~L~~l-G~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 220 (288)
.+.++|..|.++ ||++++++..+..+ + ..+..-+++|.+.
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~------n--gDl~~AI~~Lleg 78 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDC------N--GDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH------T--SCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHc------C--CCHHHHHHHHHhC
Confidence 478899999888 99999998877766 3 2477888888753
No 75
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.99 E-value=91 Score=21.58 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhc
Q 023027 175 KPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMK 222 (288)
Q Consensus 175 ~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g 222 (288)
...++-|.+|||+.+.+.+.+... -.++++.-++||..++.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-------~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-------SNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-------cCCCHHHHHHHHHhCCC
Confidence 456788889999999887766544 11257888999987653
No 76
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=20.58 E-value=64 Score=25.12 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred hCCCCCCCCCCChHHHHHHHHhCCCChhHHHHHHHh-C--CcccccCCCCChHHHHHHHhhhcCCC
Q 023027 55 QNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDM-H--PKLLTADIPRDLEPIIDFLLEEVLIP 117 (288)
Q Consensus 55 ~~P~ll~~s~~~l~~~v~~L~~~Gls~~~i~~ii~~-~--P~lL~~~~~~~l~~~l~~L~~~lG~s 117 (288)
..|.=+..+.+++++.+--|..-|+++++|+-++.- | |.+-... .. ...++|+ +-|+.
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vt-G~---kI~rILk-~~gla 81 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVIT-GN---KIMRILK-SNGLA 81 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHS-SS---CHHHHHH-HTTCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeec-cc---HHHHHHH-hCCCC
Confidence 456767888889999999999999999999998874 3 3332222 11 2345666 46765
No 77
>2y0m_B MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; HET: ALY ACO; 2.70A {Mus musculus}
Probab=20.56 E-value=81 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.9
Q ss_pred hhcccCHHHHHHHHHHHHHhhhhhhc
Q 023027 261 QMLRVSDGEFNARLIEMRLKLAERSS 286 (288)
Q Consensus 261 ~~l~~s~~~F~~~~~~~~~~~~~~~~ 286 (288)
.+=+.||+.|..++.++...+..||.
T Consensus 30 ~~E~LsD~~F~kRH~K~E~dEkrRkR 55 (74)
T 2y0m_B 30 ILENLDDSVFSKRHAKLELDEKRRKR 55 (74)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999888877777663
No 78
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.50 E-value=1.1e+02 Score=22.59 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcCCCCCCHhHHH
Q 023027 68 LSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSL 125 (288)
Q Consensus 68 ~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG~s~~~i~~il 125 (288)
...-+|.+.+|+++.+|..+-..+|+=+. +.....+.-|+...|-.++.+..++
T Consensus 26 ~~WK~~aRkLGLse~~Id~Ie~~~~r~l~----Eq~yqmLr~W~~~~G~~~Atv~~L~ 79 (112)
T 1ich_A 26 LRWKEFVKRLGLSDHEIDRLELQNGRCLR----EAQYSMLATWRRRTPRREATLELLG 79 (112)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHSCCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCcCChH----HHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 44667888999999999999999975322 3455667777655664444444443
No 79
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.35 E-value=81 Score=23.18 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHHhhhcC
Q 023027 71 EHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVL 115 (288)
Q Consensus 71 v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L~~~lG 115 (288)
-.+-+.+|++..+|..+-..+|. ++.+.....+..|+..-|
T Consensus 39 k~LAR~LGlse~dId~I~~~~p~----~l~eq~~qmL~~W~~r~G 79 (114)
T 2of5_A 39 EPMVLSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWRQRFG 79 (114)
T ss_dssp HHHHHTTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHC
Confidence 34456789999999999999983 332334455555554333
Done!