Query 023028
Match_columns 288
No_of_seqs 116 out of 1066
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00211 ribonucleoside-diphos 100.0 9.6E-73 2.1E-77 522.0 33.0 272 17-288 3-274 (330)
2 PLN02492 ribonucleoside-diphos 100.0 1E-70 2.2E-75 507.5 32.9 263 26-288 1-263 (324)
3 KOG1567 Ribonucleotide reducta 100.0 1.1E-71 2.4E-76 483.1 21.0 272 17-288 16-288 (344)
4 PRK07209 ribonucleotide-diphos 100.0 4E-66 8.8E-71 483.7 32.9 265 21-288 34-322 (369)
5 PF00268 Ribonuc_red_sm: Ribon 100.0 9.9E-66 2.2E-70 466.5 31.6 260 27-288 2-263 (281)
6 PRK09101 nrdB ribonucleotide-d 100.0 8.6E-65 1.9E-69 475.5 32.6 264 22-288 12-318 (376)
7 COG0208 NrdF Ribonucleotide re 100.0 8.8E-65 1.9E-69 465.6 31.6 264 24-288 14-294 (348)
8 PRK09614 nrdF ribonucleotide-d 100.0 2.3E-64 5E-69 465.9 32.0 258 27-288 2-269 (324)
9 cd01049 RNRR2 Ribonucleotide R 100.0 1.2E-62 2.7E-67 447.6 31.2 252 36-288 1-264 (288)
10 PRK12759 bifunctional gluaredo 100.0 2.3E-61 5E-66 457.5 31.9 268 14-288 79-357 (410)
11 PRK13966 nrdF2 ribonucleotide- 100.0 3.2E-61 7E-66 443.2 31.0 256 27-288 6-268 (324)
12 PRK13965 ribonucleotide-diphos 100.0 2.3E-59 5E-64 432.7 30.3 250 34-288 23-279 (335)
13 PRK13967 nrdF1 ribonucleotide- 100.0 4E-57 8.6E-62 416.0 30.8 251 33-288 9-266 (322)
14 PRK08326 ribonucleotide-diphos 100.0 8.7E-51 1.9E-55 372.5 29.1 243 34-288 21-282 (311)
15 cd07911 RNRR2_Rv0233_like Ribo 100.0 2.6E-50 5.6E-55 365.2 29.7 242 46-288 9-262 (280)
16 PF11583 AurF: P-aminobenzoate 98.7 2.4E-06 5.2E-11 78.4 20.8 177 55-241 46-233 (304)
17 PF02332 Phenol_Hydrox: Methan 97.9 0.0025 5.3E-08 56.4 18.9 163 74-240 66-232 (233)
18 cd01057 AAMH_A Aromatic and Al 97.7 0.0061 1.3E-07 59.2 20.0 178 71-253 67-249 (465)
19 cd01050 Acyl_ACP_Desat Acyl AC 97.7 0.0063 1.4E-07 55.6 18.7 168 54-240 24-210 (297)
20 cd01058 AAMH_B Aromatic and Al 97.6 0.023 5.1E-07 52.3 21.0 167 70-238 88-257 (304)
21 cd00657 Ferritin_like Ferritin 97.5 0.0034 7.4E-08 48.0 12.7 111 104-231 19-129 (130)
22 PF03405 FA_desaturase_2: Fatt 96.9 0.027 5.8E-07 52.2 13.1 169 55-241 27-217 (330)
23 PF05138 PaaA_PaaC: Phenylacet 96.4 0.5 1.1E-05 42.6 18.0 175 72-263 7-185 (263)
24 TIGR02156 PA_CoA_Oxy1 phenylac 95.7 1.6 3.4E-05 39.9 18.5 170 75-263 17-189 (289)
25 PRK13778 paaA phenylacetate-Co 95.4 2.2 4.8E-05 39.4 18.8 170 75-263 35-207 (314)
26 PF11266 DUF3066: Protein of u 95.3 1.6 3.5E-05 36.9 19.6 180 76-274 4-187 (219)
27 PRK13654 magnesium-protoporphy 95.2 0.17 3.8E-06 46.5 9.6 142 71-233 72-220 (355)
28 CHL00185 ycf59 magnesium-proto 94.6 0.36 7.8E-06 44.3 10.0 142 71-233 68-216 (351)
29 cd01041 Rubrerythrin Rubreryth 94.3 1.1 2.3E-05 35.9 11.3 105 104-233 25-131 (134)
30 COG1633 Uncharacterized conser 94.1 3 6.5E-05 35.3 14.2 142 85-236 27-170 (176)
31 cd01047 ACSF Aerobic Cyclase S 94.1 0.31 6.7E-06 44.3 8.5 44 192-235 76-121 (323)
32 PLN00179 acyl- [acyl-carrier p 94.0 1.4 3E-05 41.6 12.8 116 114-242 157-275 (390)
33 PRK13654 magnesium-protoporphy 94.0 0.35 7.5E-06 44.6 8.7 44 192-235 96-141 (355)
34 TIGR02029 AcsF magnesium-proto 94.0 0.37 7.9E-06 44.1 8.7 44 192-235 86-131 (337)
35 COG3396 Uncharacterized conser 93.7 4.9 0.00011 36.0 17.8 149 74-239 11-163 (265)
36 PF04305 DUF455: Protein of un 93.7 0.82 1.8E-05 41.0 10.5 105 118-239 104-212 (253)
37 CHL00185 ycf59 magnesium-proto 93.6 0.46 1E-05 43.6 8.6 43 192-234 92-136 (351)
38 TIGR02029 AcsF magnesium-proto 93.5 0.8 1.7E-05 41.9 10.1 142 71-233 62-210 (337)
39 PRK14983 aldehyde decarbonylas 93.3 1.7 3.6E-05 37.2 10.9 140 76-233 14-156 (231)
40 PLN02508 magnesium-protoporphy 93.0 0.11 2.3E-06 47.7 3.7 44 192-235 92-137 (357)
41 cd01047 ACSF Aerobic Cyclase S 92.8 0.77 1.7E-05 41.8 8.8 142 71-233 52-200 (323)
42 PLN02508 magnesium-protoporphy 92.5 0.64 1.4E-05 42.8 8.0 142 71-233 68-216 (357)
43 cd01045 Ferritin_like_AB Uncha 90.9 6.2 0.00014 30.6 16.1 37 104-140 19-55 (139)
44 cd01044 Ferritin_CCC1_N Ferrit 89.6 8.7 0.00019 30.2 14.4 102 103-231 18-122 (125)
45 cd07908 Mn_catalase_like Manga 88.3 12 0.00027 30.3 11.7 111 104-230 39-152 (154)
46 PF02915 Rubrerythrin: Rubrery 87.6 2.5 5.4E-05 33.0 6.9 112 105-231 20-136 (137)
47 PF10118 Metal_hydrol: Predict 86.8 23 0.00049 31.7 17.1 144 81-237 27-175 (253)
48 cd01051 Mn_catalase Manganese 84.0 16 0.00035 30.1 10.1 105 110-235 51-155 (156)
49 cd07908 Mn_catalase_like Manga 77.8 11 0.00024 30.6 7.2 62 200-261 39-119 (154)
50 PF03405 FA_desaturase_2: Fatt 75.0 24 0.00052 32.9 9.2 42 104-145 176-218 (330)
51 PF08671 SinI: Anti-repressor 71.8 2.1 4.5E-05 25.3 0.9 27 256-282 3-29 (30)
52 PLN00179 acyl- [acyl-carrier p 71.6 22 0.00047 33.7 8.0 43 103-145 232-275 (390)
53 PF13668 Ferritin_2: Ferritin- 71.2 49 0.0011 26.1 11.3 100 108-232 34-135 (137)
54 cd01051 Mn_catalase Manganese 69.6 43 0.00092 27.6 8.7 36 104-139 120-155 (156)
55 cd01050 Acyl_ACP_Desat Acyl AC 69.0 34 0.00073 31.5 8.6 41 105-145 169-212 (297)
56 PF14518 Haem_oxygenas_2: Iron 67.2 22 0.00047 26.7 6.1 77 126-205 16-92 (106)
57 COG1592 Rubrerythrin [Energy p 63.6 88 0.0019 26.2 13.6 108 96-236 19-130 (166)
58 cd01055 Nonheme_Ferritin nonhe 62.9 79 0.0017 25.4 9.7 56 205-260 32-97 (156)
59 cd00907 Bacterioferritin Bacte 61.4 51 0.0011 26.4 7.6 59 203-261 32-99 (153)
60 PF00268 Ribonuc_red_sm: Ribon 60.6 79 0.0017 28.4 9.5 75 157-236 37-113 (281)
61 cd01046 Rubrerythrin_like rubr 53.0 1.1E+02 0.0023 23.9 14.6 96 104-233 25-120 (123)
62 cd01045 Ferritin_like_AB Uncha 50.9 97 0.0021 23.6 7.5 53 208-260 27-103 (139)
63 cd00907 Bacterioferritin Bacte 50.1 1.3E+02 0.0028 23.9 14.6 110 107-236 32-141 (153)
64 PF12902 Ferritin-like: Ferrit 46.6 38 0.00082 29.8 4.8 35 204-238 24-58 (227)
65 cd01041 Rubrerythrin Rubreryth 46.5 1.3E+02 0.0029 23.6 7.7 55 202-256 27-86 (134)
66 PF06945 DUF1289: Protein of u 46.2 23 0.0005 23.4 2.6 22 67-88 25-46 (51)
67 cd00657 Ferritin_like Ferritin 45.7 60 0.0013 23.7 5.4 54 207-260 26-94 (130)
68 TIGR02158 PA_CoA_Oxy3 phenylac 45.6 2.2E+02 0.0047 25.3 17.9 143 105-263 15-159 (237)
69 PRK09614 nrdF ribonucleotide-d 44.4 96 0.0021 28.6 7.4 76 157-237 40-117 (324)
70 PF02915 Rubrerythrin: Rubrery 44.1 1.4E+02 0.003 22.7 7.4 32 104-135 105-136 (137)
71 COG1528 Ftn Ferritin-like prot 41.2 2.1E+02 0.0045 24.0 8.1 54 204-260 33-99 (167)
72 cd01046 Rubrerythrin_like rubr 40.7 1.7E+02 0.0038 22.7 8.7 55 201-260 26-80 (123)
73 PRK13967 nrdF1 ribonucleotide- 40.3 1.6E+02 0.0035 27.2 8.2 76 157-237 40-117 (322)
74 PF05067 Mn_catalase: Manganes 40.2 87 0.0019 28.6 6.2 73 51-140 121-195 (283)
75 cd01049 RNRR2 Ribonucleotide R 39.8 2.8E+02 0.006 24.8 11.6 61 175-238 46-107 (288)
76 TIGR03225 benzo_boxB benzoyl-C 39.6 3.5E+02 0.0076 26.0 10.9 161 63-236 86-254 (471)
77 PF03070 TENA_THI-4: TENA/THI- 38.7 2.3E+02 0.0051 23.6 19.9 150 105-263 51-208 (210)
78 COG3687 Predicted metal-depend 37.8 3.1E+02 0.0067 24.8 15.0 149 78-237 35-187 (280)
79 cd01044 Ferritin_CCC1_N Ferrit 35.8 95 0.0021 24.2 5.2 40 200-239 19-58 (125)
80 PHA03154 hypothetical protein; 34.9 2.2E+02 0.0048 25.9 7.7 61 224-286 211-275 (304)
81 PF03810 IBN_N: Importin-beta 34.5 35 0.00076 23.7 2.3 34 48-87 38-71 (77)
82 PF13668 Ferritin_2: Ferritin- 34.0 2.3E+02 0.005 22.1 7.7 33 104-136 103-135 (137)
83 PRK12759 bifunctional gluaredo 32.8 4.3E+02 0.0094 25.3 10.1 74 67-140 220-297 (410)
84 PF11251 DUF3050: Protein of u 28.3 4.2E+02 0.0091 23.4 12.8 161 90-258 32-228 (232)
85 cd01055 Nonheme_Ferritin nonhe 27.4 3.2E+02 0.0069 21.8 14.1 111 107-236 30-140 (156)
86 cd01052 DPSL DPS-like protein, 27.3 3.1E+02 0.0066 21.5 9.7 60 202-261 32-111 (148)
87 TIGR01114 mtrH N5-methyltetrah 27.3 75 0.0016 29.3 3.6 46 239-285 49-94 (314)
88 COG1592 Rubrerythrin [Energy p 26.2 1.5E+02 0.0032 24.9 4.9 34 201-234 29-62 (166)
89 cd01052 DPSL DPS-like protein, 25.6 3.3E+02 0.0072 21.3 13.1 110 110-231 36-147 (148)
90 PF12165 DUF3594: Domain of un 25.4 1.2E+02 0.0027 24.2 4.0 36 126-161 86-126 (137)
91 PRK14047 putative methyltransf 23.6 93 0.002 28.6 3.4 46 239-285 49-94 (310)
92 TIGR00754 bfr bacterioferritin 23.1 4E+02 0.0087 21.4 9.4 59 203-261 33-100 (157)
93 KOG3316 Transport protein part 23.0 1.3E+02 0.0027 24.9 3.8 39 182-220 37-76 (163)
94 PF09959 DUF2193: Uncharacteri 23.0 2.1E+02 0.0046 27.5 5.7 76 185-263 124-214 (499)
95 PRK13966 nrdF2 ribonucleotide- 21.3 5.1E+02 0.011 23.9 8.0 61 174-237 58-119 (324)
96 PF09011 HMG_box_2: HMG-box do 20.7 79 0.0017 22.1 2.0 17 70-86 41-57 (73)
97 PF06628 Catalase-rel: Catalas 20.3 1.3E+02 0.0028 20.9 3.0 29 61-89 6-34 (68)
98 PF11583 AurF: P-aminobenzoate 20.0 4.3E+02 0.0093 23.8 7.2 30 111-140 199-228 (304)
99 COG3313 Predicted Fe-S protein 20.0 1E+02 0.0022 22.2 2.4 24 67-90 30-53 (74)
No 1
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=9.6e-73 Score=522.02 Aligned_cols=272 Identities=70% Similarity=1.217 Sum_probs=265.6
Q ss_pred hccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 023028 17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGI 96 (288)
Q Consensus 17 ~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~ 96 (288)
+.+++.|++|+||+||+++++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||+++++++++|+.+|++
T Consensus 3 ~~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~ 82 (330)
T PTZ00211 3 EAMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGI 82 (330)
T ss_pred hhhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHH
Q 023028 97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF 176 (288)
Q Consensus 97 v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~ 176 (288)
|++++++.+++.++.||+++|+++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.+++++.+++
T Consensus 83 v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~ 162 (330)
T PTZ00211 83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSF 162 (330)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 023028 177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIET 256 (288)
Q Consensus 177 ~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~ 256 (288)
++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++.++|++++.+||++|.
T Consensus 163 ~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~ 242 (330)
T PTZ00211 163 AERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIER 242 (330)
T ss_pred HHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+|+++++|++++||+.+++++||+|+||+||.
T Consensus 243 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~ 274 (330)
T PTZ00211 243 EFICDALPVDLIGMNSRLMAQYIEFVADRLLV 274 (330)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999973
No 2
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=1e-70 Score=507.54 Aligned_cols=263 Identities=80% Similarity=1.361 Sum_probs=257.4
Q ss_pred ccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023028 26 EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (288)
Q Consensus 26 ~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l 105 (288)
|+||.+|++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||+++++++++|+++|++|++++.+.+
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~ 80 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARF 80 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 023028 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (288)
Q Consensus 106 ~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (288)
++.++.||+++++++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.++++++++++++++++++
T Consensus 81 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~ 160 (324)
T PLN02492 81 MKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFAC 160 (324)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999988899999999999
Q ss_pred hhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023028 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265 (288)
Q Consensus 186 lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~~~ 265 (288)
+||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++.+++++++.+||++|.+|+++++|.
T Consensus 161 lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~~~~~~~~ 240 (324)
T PLN02492 161 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240 (324)
T ss_pred hhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCC
Q 023028 266 ALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+++||+.+.+++||+|+||+||.
T Consensus 241 ~~~Gl~~~~~~~yi~y~ad~~L~ 263 (324)
T PLN02492 241 ALVGMNADLMSQYIEFVADRLLV 263 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999983
No 3
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-71 Score=483.14 Aligned_cols=272 Identities=69% Similarity=1.175 Sum_probs=265.6
Q ss_pred hccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 023028 17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGI 96 (288)
Q Consensus 17 ~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~ 96 (288)
..+++..+++++|.+++.|++++|++|+.+|++||++++.||+++|||+++|..||.+|+++||..+.++|++++++|++
T Consensus 16 ~~~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGi 95 (344)
T KOG1567|consen 16 HDMKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGI 95 (344)
T ss_pred hhccccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccc
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccc-hH
Q 023028 97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-DS 175 (288)
Q Consensus 97 v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~-~~ 175 (288)
|.++++.++...++.||+|+||++|+++||||+++||.+++++++||++|+.+|+++.+.|.+++|++|..+|+.+. .+
T Consensus 96 vnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s~ 175 (344)
T KOG1567|consen 96 VNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDSL 175 (344)
T ss_pred hhHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999755 45
Q ss_pred HHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 023028 176 FAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE 255 (288)
Q Consensus 176 ~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E 255 (288)
|++++|||+++|||+|+|+|+.+|||.++|+|||++-.+.+|+|||++|+.|+|.++.+|+++|+++.|++++.+||++|
T Consensus 176 faeRlvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IE 255 (344)
T KOG1567|consen 176 FAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIE 255 (344)
T ss_pred HHHHHHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 256 TQFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.+|...++|...+|||.+.|++||+|+|||+|.
T Consensus 256 qef~~eaLPv~liGMN~~lM~qYIEFVADrLL~ 288 (344)
T KOG1567|consen 256 QEFLTEALPVNLIGMNCDLMSQYIEFVADRLLV 288 (344)
T ss_pred HHHHHhccchhhhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999873
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=4e-66 Score=483.69 Aligned_cols=265 Identities=28% Similarity=0.550 Sum_probs=248.4
Q ss_pred cccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhc---CCHHHHHHHHHHHHHHHHHHHHH
Q 023028 21 EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER---LLDSEKHFISHVLAFFAASDGIV 97 (288)
Q Consensus 21 ~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~---L~~~er~~~~~~l~~l~~~d~~v 97 (288)
..-.+++|++|+++..+++|++|||+|++|+++.++||+|+|||+++|+.||++ ||+.||++++++|++|+.+|++|
T Consensus 34 ~~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v 113 (369)
T PRK07209 34 VNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLV 113 (369)
T ss_pred ccccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899998888899999999999999999999999999999999999974 99999999999999999999999
Q ss_pred HhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-----
Q 023028 98 LENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS----- 172 (288)
Q Consensus 98 ~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~----- 172 (288)
++++.+.+.+.++.||+++|+++|+++|+||+++||+++++++.++++ +|+++.++|.+++|++|+.++++.
T Consensus 114 ~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e---~f~~~~~~p~l~~K~~~i~~~~~~~~~~~ 190 (369)
T PRK07209 114 ANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGE---IFNMYHEVPSIRAKDEFLIPFTRSLTDPN 190 (369)
T ss_pred HHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHhccccc
Confidence 999988899999999999999999999999999999999999887766 999999999999999999998853
Q ss_pred --------chHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---
Q 023028 173 --------SDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--- 240 (288)
Q Consensus 173 --------~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--- 240 (288)
++++++++++++ ++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++.+.|
T Consensus 191 ~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~ 270 (369)
T PRK07209 191 FKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLW 270 (369)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 346899999985 58999999999999999999999999999999999999999999999999986654
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 241 ----WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 241 ----~~~i~e~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.++|++++++||++|.+|+++++|.+++||+.+++++||+|+||+||.
T Consensus 271 ~~~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~ 322 (369)
T PRK07209 271 TAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQ 322 (369)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999983
No 5
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=9.9e-66 Score=466.46 Aligned_cols=260 Identities=40% Similarity=0.735 Sum_probs=244.7
Q ss_pred cccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023028 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL 106 (288)
Q Consensus 27 ~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~ 106 (288)
+||.+|+.+| +|++||++|++|++++++||.|+|||+++|+.+|++||+.||+++++++++|+.+|++|++++.+.++
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~ 79 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIM 79 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 7899999888 99999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
+.+++||+++|+++|+++|+||+++||+++++++.|+.++.++|+++.++|.+++|++++.+++++++++.+++++++++
T Consensus 80 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 159 (281)
T PF00268_consen 80 PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVIL 159 (281)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987899999999999999999999999999999877899999999999
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHhcC
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--KRLHWQKVHHMVHEAVEIETQFVCEALP 264 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~--~e~~~~~i~e~~~eave~E~~~~~~~~~ 264 (288)
|||+|||||+++++|+++|+|||+++++++|+|||++|+.|++.+++.++ .+++.+.|++++++||++|.+|++..++
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~~~~~~~ 239 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEFIDDILP 239 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 5677899999999999999999998888
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 265 CALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 265 ~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+++.|++.+++++||+|+||+||.
T Consensus 240 ~~~~gl~~~~~~~yi~y~an~~L~ 263 (281)
T PF00268_consen 240 GDIIGLNKEDIKQYIKYNANRRLR 263 (281)
T ss_dssp GGGTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999973
No 6
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=8.6e-65 Score=475.52 Aligned_cols=264 Identities=24% Similarity=0.346 Sum_probs=243.6
Q ss_pred ccccccccccCCCcc-eecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023028 22 QEDQEPILMEQNQRF-CMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (288)
Q Consensus 22 ~~~~~~il~~~~~~~-~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~ 100 (288)
+..++|||+|++.++ .+.|++|||+|++||++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+++
T Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~ 91 (376)
T PRK09101 12 DQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 91 (376)
T ss_pred ccccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345699999998665 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccc-------
Q 023028 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS------- 173 (288)
Q Consensus 101 l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~------- 173 (288)
+...+++.++.||+++++++|+++|+||+++||+|+++++.+|++ +|+++.++|.+++|++|+.+++++.
T Consensus 92 ~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~e---~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~ 168 (376)
T PRK09101 92 PNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSV---VFDDIVTNEEILKRAKDISSYYDDLIEMTSYY 168 (376)
T ss_pred hHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 988899999999999999999999999999999999999888876 9999999999999999999988642
Q ss_pred -----------------------hHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHH
Q 023028 174 -----------------------DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (288)
Q Consensus 174 -----------------------~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~ 230 (288)
..+++++++++++||++|||||+++++|+++|+|||+|++|++|+|||++|+.|++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~ 248 (376)
T PRK09101 169 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 248 (376)
T ss_pred hhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 224556688889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--hch---------HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 231 LYSLLRK--RLH---------WQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 231 l~~~l~~--e~~---------~~~i~e~~~eave~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+++.+.. +.| .++|++++++||++|++|+++++ +++++||+.+.+++||+|+||+||.
T Consensus 249 l~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~ 318 (376)
T PRK09101 249 MLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQ 318 (376)
T ss_pred HHHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999984 322 36899999999999999999998 4579999999999999999999983
No 7
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.8e-65 Score=465.57 Aligned_cols=264 Identities=30% Similarity=0.480 Sum_probs=239.0
Q ss_pred ccccccccCC-CcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023028 24 DQEPILMEQN-QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (288)
Q Consensus 24 ~~~~il~~~~-~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~ 102 (288)
+...++.|++ +..++.|++|||+|.+|+++.++||.|+|||+++|+.||++||+.||+++.++|++|+++|++|++++.
T Consensus 14 ~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~ 93 (348)
T COG0208 14 EEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGV 93 (348)
T ss_pred cccccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444556654 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc------c---
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------S--- 173 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~------~--- 173 (288)
+.+.+.++.||+++++++|++||+||++|||+|++|++.+++.....++|+.++|.+++|++++...|++ .
T Consensus 94 ~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~ 173 (348)
T COG0208 94 PALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLE 173 (348)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchH
Confidence 9999999999999999999999999999999999999865555443448888999999999999998872 1
Q ss_pred hHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHH
Q 023028 174 DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHH 246 (288)
Q Consensus 174 ~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~e 246 (288)
..+.+++++.+++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++++.| ++++++
T Consensus 174 ~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~ 253 (348)
T COG0208 174 EFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYD 253 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHH
Confidence 2245555555899999999999999999999999999999999999999999999999999988754 577999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 247 MVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 247 ~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
++.+||++|++|+.++++ +++||+.+.+++||+|+||+||.
T Consensus 254 l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~ 294 (348)
T COG0208 254 LFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQ 294 (348)
T ss_pred HHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 59999999999999999999983
No 8
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=2.3e-64 Score=465.86 Aligned_cols=258 Identities=25% Similarity=0.377 Sum_probs=242.4
Q ss_pred cccccC-CCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023028 27 PILMEQ-NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (288)
Q Consensus 27 ~il~~~-~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l 105 (288)
++++|+ .++.+++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~ 81 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL 81 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 467776 4678999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc--chHHHHHHHHH
Q 023028 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGF 183 (288)
Q Consensus 106 ~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~ 183 (288)
.+.++.||+++|+++|+++|+||+++||+++++++ ++.++.++|+++.++|.+++|++|+.+++++ ...+.++++++
T Consensus 82 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~ 160 (324)
T PRK09614 82 MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVAS 160 (324)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999996 4566688999999999999999999999984 23578888888
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIET 256 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~e~~~eave~E~ 256 (288)
+++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++++.+. ++|++++++||++|+
T Consensus 161 ~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~ 240 (324)
T PRK09614 161 VFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987663 689999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+|++++++ ++| +.+++++||+|+||+||.
T Consensus 241 ~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~ 269 (324)
T PRK09614 241 AYTELLYD--IVG-LAEDVKKYIRYNANKRLM 269 (324)
T ss_pred HHHHHHHC--cCC-CHHHHHHHHHHHHHHHHH
Confidence 99999997 999 999999999999999983
No 9
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=1.2e-62 Score=447.58 Aligned_cols=252 Identities=55% Similarity=0.921 Sum_probs=241.0
Q ss_pred ceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHH
Q 023028 36 FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEAR 115 (288)
Q Consensus 36 ~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~ 115 (288)
++++|++|||+|++|++++++||.|+|||+++|+.+|++||+.||+.+++++++|+.+|++|++++.+.+.+.++.||++
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~ 80 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEAR 80 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHhhhhH
Q 023028 116 AFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-----DSFAERLVGFACVEGIF 190 (288)
Q Consensus 116 ~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~-----~~~~~~lv~~~~lEgi~ 190 (288)
+|+++|+++|+||+++||+++++++.++ +++++|+++.++|.+++|++|+.+++++. +++++++++++++||++
T Consensus 81 ~~~~~q~~~E~iH~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 159 (288)
T cd01049 81 AFYGFQAFMENIHSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIF 159 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 77889999999999999999999999753 47999999999999999
Q ss_pred hHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-------LHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 191 f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-------~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
|+|||+++++|+++|+|||+++++++|.|||++|+.|++.+++.++++ ...+.|.+++++||++|++|+++++
T Consensus 160 f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E~~~~~~~~ 239 (288)
T cd01049 160 FYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLL 239 (288)
T ss_pred HHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999877 3478899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 264 PCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 264 ~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+.++.|++.+++++||+|+||+||.
T Consensus 240 ~~~~~g~~~~~~~~yi~y~an~~l~ 264 (288)
T cd01049 240 PDGILGLNKEDMKQYIEYVANRRLE 264 (288)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9899999999999999999999973
No 10
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.3e-61 Score=457.54 Aligned_cols=268 Identities=24% Similarity=0.365 Sum_probs=244.9
Q ss_pred hhhhccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHh--cCCHHHHHHHHHHHHHHH
Q 023028 14 QREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE--RLLDSEKHFISHVLAFFA 91 (288)
Q Consensus 14 ~~~~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~--~L~~~er~~~~~~l~~l~ 91 (288)
.+.-++.+...+.+|+.+.. ++.|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+
T Consensus 79 ~~~g~l~~~~~~~~~~~~~~---~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~ 155 (410)
T PRK12759 79 ARAGEVIARVKGSSLTTFSK---TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFT 155 (410)
T ss_pred HHhCCHHHHhcCCccccccc---ccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 35566677777777877544 8899999999999999999999999999999999996 799999999999999999
Q ss_pred HHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 023028 92 ASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH 171 (288)
Q Consensus 92 ~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~ 171 (288)
.+|++|++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.+ ++ .|+.+.++|.+++|++|+.++..
T Consensus 156 ~lD~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~-~~---~~~~~~~~~~~~~k~~~~~~~~~ 231 (410)
T PRK12759 156 QSDVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLP-DS---EYHAFLEYKAMTDKIDFMMDADP 231 (410)
T ss_pred HHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HH---HHHHHHhhHHHHHHHHHHHhcCc
Confidence 999999999988899999999999999999999999999999999999765 33 49999999999999999987654
Q ss_pred c-chHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHH
Q 023028 172 S-SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQK 243 (288)
Q Consensus 172 ~-~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~ 243 (288)
. ...+++++++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++.+.| .++
T Consensus 232 ~~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~ 311 (410)
T PRK12759 232 TTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKE 311 (410)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHH
Confidence 3 34578888888999999999999999999999999999999999999999999999999999976543 478
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHhhcCC
Q 023028 244 VHHMVHEAVEIETQFVCEALPC-ALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 244 i~e~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
|++++++||++|++|++++++. .++||+.+++++||+|+||+||.
T Consensus 312 v~~~~~eave~E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an~~L~ 357 (410)
T PRK12759 312 IYLMASKAVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLN 357 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 69999999999999999999983
No 11
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=3.2e-61 Score=443.21 Aligned_cols=256 Identities=18% Similarity=0.273 Sum_probs=235.4
Q ss_pred cccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023028 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL 106 (288)
Q Consensus 27 ~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~ 106 (288)
+++.| ....++.|++|||++.+|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+.
T Consensus 6 ~~~~~-~~~~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~ 84 (324)
T PRK13966 6 KLIDR-VSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLI 84 (324)
T ss_pred ccccc-cccccCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34443 33468899999999999999999999999999999999999999999999999999999999999999887899
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
+.++.||+++|+++|+++|+||+++||+++++++ ++++++++|+++.++|.+++|++|+.+++++.. .++++++++++
T Consensus 85 ~~~~~pe~~~~~~~q~~~E~IHsesYs~il~tl~-~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~-~~~~~va~~~l 162 (324)
T PRK13966 85 PDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLC-STAEIDDAFRWSEENRNLQRKAEIVLQYYRGDE-PLKRKVASTLL 162 (324)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Confidence 9999999999999999999999999999999997 467888999999999999999999999998765 46999999999
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc---h----HHHHHHHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL---H----WQKVHHMVHEAVEIETQFV 259 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~---~----~~~i~e~~~eave~E~~~~ 259 (288)
||++|||||+++++|+++|+|||+++++++|+|||++|+.|++.+++.+..+. . .+++++++++||++|++|+
T Consensus 163 Egi~FysgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E~e~~ 242 (324)
T PRK13966 163 ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYT 242 (324)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999665432 2 2567999999999999999
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 260 CEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 260 ~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.+++ +++||+. ++++||+|+||+||.
T Consensus 243 ~~~~--~~~Gl~~-~v~~Yi~y~An~~L~ 268 (324)
T PRK13966 243 QDLY--DEVGLTE-DVKKFLRYNANKALM 268 (324)
T ss_pred HHHH--hcCCChH-HHHHHHHHHHHHHHH
Confidence 9987 4799987 599999999999984
No 12
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.3e-59 Score=432.71 Aligned_cols=250 Identities=18% Similarity=0.287 Sum_probs=228.3
Q ss_pred CcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHH
Q 023028 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (288)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E 113 (288)
...++.|++|||++++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+..+.....+....++
T Consensus 23 ~~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~ 102 (335)
T PRK13965 23 RSINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 102 (335)
T ss_pred ccccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchH
Confidence 35688999999999999999999999999999999999999999999999999999999999999876555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHh
Q 023028 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (288)
Q Consensus 114 ~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~ 193 (288)
.++|+++|+++|+||+++||+++++++.++ +++++|+++.++|.+++|++|+.+++++.. .++++++++++||++|||
T Consensus 103 e~~~l~~q~~~E~IHs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEGi~Fys 180 (335)
T PRK13965 103 EQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRRARVLIPYYTGDD-PLKSKVAAAMMPGFLLYG 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997655 667899999999999999999999998654 478999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023028 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVHEAVEIETQFVCEALPCA 266 (288)
Q Consensus 194 ~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~e~~~eave~E~~~~~~~~~~~ 266 (288)
||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+..+++ .++|++++++||++|++|++++++
T Consensus 181 gFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E~~~~~~~~~-- 258 (335)
T PRK13965 181 GFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYA-- 258 (335)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999987665543 256999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC
Q 023028 267 LIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 267 ~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.+|++.+ +++||+|+||+||.
T Consensus 259 ~~g~~~~-~~~Yi~y~an~~L~ 279 (335)
T PRK13965 259 GFDLAED-AIRFSLYNAGKFLQ 279 (335)
T ss_pred CCCcHHH-HHHHHHHHHHHHHH
Confidence 6999877 99999999999983
No 13
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4e-57 Score=416.02 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=229.9
Q ss_pred CCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChH
Q 023028 33 NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIP 112 (288)
Q Consensus 33 ~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~ 112 (288)
....++..++|++...+|+++.++||.|+|||+++|+.||++||+.||+++++++++|+.+|++|+.++.+.+...++.|
T Consensus 9 ~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~~~ 88 (322)
T PRK13967 9 VHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVTP 88 (322)
T ss_pred cccCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCCH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999887788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhH
Q 023028 113 EARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFS 192 (288)
Q Consensus 113 E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~ 192 (288)
|+++|+++|+++|+||+++||+++++++. +++++++|+++.++|.+++|++|+.+++++. ...+++++++++||++||
T Consensus 89 e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~-~~~~~~v~~~~lEgi~Fy 166 (322)
T PRK13967 89 HEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRGD-DALKRKASSVMLESFLFY 166 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999965 6777889999999999999999999999865 356888889999999999
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHHHHHHHHHHHHHHHHHhcCC
Q 023028 193 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVHEAVEIETQFVCEALPC 265 (288)
Q Consensus 193 ~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~e~~~eave~E~~~~~~~~~~ 265 (288)
|||+++++|+++|+|||+|++|++|.|||++|+.|+++++.....+++ .+.+.+++.+|+++|++|+.+++
T Consensus 167 sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~~~E~~~~~~~~-- 244 (322)
T PRK13967 167 SGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLY-- 244 (322)
T ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999997754444432 34588999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCC
Q 023028 266 ALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+++||+.+ +++||+|+||+||.
T Consensus 245 ~~~Gl~~~-v~~yi~Y~an~rL~ 266 (322)
T PRK13967 245 DELGWTDD-VLPYMRYNANKALA 266 (322)
T ss_pred CcCCchHH-HHHHHHHHHHHHHH
Confidence 58999866 88999999999973
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=8.7e-51 Score=372.48 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=211.8
Q ss_pred CcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCCh--
Q 023028 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI-- 111 (288)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~-- 111 (288)
.+|+.+| .++|++++++||+|+|||+++|+.||++||+.||+++++++++|+.+|+.|+.++.+ +...++.
T Consensus 21 ~~w~~~~------~~ly~~~~~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~ 93 (311)
T PRK08326 21 LNWNSFP------MKLFAKGNAKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEG 93 (311)
T ss_pred cCcchhH------HHHHHHHHHcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccC
Confidence 3566666 479999999999999999999999999999999999999999999999999999875 5556665
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHH----HHHHHhc---cchHHHHHHHHH
Q 023028 112 -PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAK----WALDWIH---SSDSFAERLVGF 183 (288)
Q Consensus 112 -~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~----~i~~~~~---~~~~~~~~lv~~ 183 (288)
||+++|+++|+++|++|+++|++++++++.+. + +++++.++|.+++|.. +....+. +++.+++++++|
T Consensus 94 ~~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~-~---~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~ 169 (311)
T PRK08326 94 RLEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTE-D---LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTY 169 (311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-H---HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999996543 3 6777778899999853 4444443 345678888876
Q ss_pred -HHhhhhHhHhHHHHH-HHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHHH
Q 023028 184 -ACVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH------WQKVHHMVHEAVEIE 255 (288)
Q Consensus 184 -~~lEgi~f~~~F~~~-~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~------~~~i~e~~~eave~E 255 (288)
+++|||+|||||+++ ++++++|+|||+++++++|.|||++|+.||+.+++.++.+.+ .+.+.+++.+||++
T Consensus 170 ~~~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~- 248 (311)
T PRK08326 170 NHVVEGVLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL- 248 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-
Confidence 579999999999997 699999999999999999999999999999999999987654 36788999999995
Q ss_pred HHHHHHhcCCCCC-CCCHHHHHHHHHHHHhhcCC
Q 023028 256 TQFVCEALPCALI-GMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 256 ~~~~~~~~~~~~~-Gl~~~~~~~yi~y~ad~~L~ 288 (288)
++|+.+.+|.++. |++.+++++||+|+||+||.
T Consensus 249 ~~~~~~~~~~~i~~Gl~~~~~~~Yi~y~an~RL~ 282 (311)
T PRK08326 249 IDEIFALYGDQIPFELSNDEFVDYAADRGQRRLG 282 (311)
T ss_pred HHHHHHhccCcccCCCCHHHHHHHHHHHHHHHHH
Confidence 8899888877786 99999999999999999973
No 15
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=2.6e-50 Score=365.19 Aligned_cols=242 Identities=19% Similarity=0.272 Sum_probs=204.7
Q ss_pred HHHHHHHHhcC-CCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--ccCChHHHHHHHHHHH
Q 023028 46 VWEMYKKAQAS-FWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL--NDIQIPEARAFYGFQI 122 (288)
Q Consensus 46 ~~~lykk~~~~-fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~--~~~~~~E~~~~~~~Q~ 122 (288)
.+++|++++++ ||+|+|||+++|+.+|++||+.||+++++++++|+.+|++|+.++.+.+. ...+.||+++|+++|+
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~ 88 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFL 88 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 45899999999 99999999999999999999999999999999999999999999987665 5567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccc--hHHHHHHHH-HHHhhhhHhHhHHHHHH
Q 023028 123 AMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS--DSFAERLVG-FACVEGIFFSGSFCAIF 199 (288)
Q Consensus 123 ~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~--~~~~~~lv~-~~~lEgi~f~~~F~~~~ 199 (288)
++|++|+++||+++++++.+++ .+...++....+.+.++..+....++++ .+++++.+. ..++||++|||||+++.
T Consensus 89 ~~EaiH~esYs~~l~tl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~ 167 (280)
T cd07911 89 FEEAKHTDFFRRWLDAVGVSDD-LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWR 167 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976543 2334455444555555556555555533 345664443 46899999999999977
Q ss_pred -HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHH
Q 023028 200 -WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--WQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSS 273 (288)
Q Consensus 200 -~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--~~~i~e~~~eave~E~~~~~~~~---~~~~~Gl~~~ 273 (288)
+++++|+|||++++|++|.|||++|+.||+.+++.++++.| .+.+.+.++++++.|.+++++++ +..++|++.+
T Consensus 168 ~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~~~~~~~~~~~~g~~~~ 247 (280)
T cd07911 168 TICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPD 247 (280)
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCHH
Confidence 79999999999999999999999999999999999987754 25578888888888888887764 4569999999
Q ss_pred HHHHHHHHHHhhcCC
Q 023028 274 LMSQYIKFVADRLLH 288 (288)
Q Consensus 274 ~~~~yi~y~ad~~L~ 288 (288)
++++|++|.||+||.
T Consensus 248 ~~~~Y~~~~a~~rL~ 262 (280)
T cd07911 248 ELMQYAVDQFQRRLG 262 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999983
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.74 E-value=2.4e-06 Score=78.45 Aligned_cols=177 Identities=17% Similarity=0.064 Sum_probs=102.8
Q ss_pred cCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHH----ccCChHHHHHHHHHHHHHH
Q 023028 55 ASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA-----ARFL----NDIQIPEARAFYGFQIAME 125 (288)
Q Consensus 55 ~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~-----~~l~----~~~~~~E~~~~~~~Q~~~E 125 (288)
...|.|.+...--+-..|++||+++|..+.+--..-....++..+... ..++ +.-.....+.|...++.+|
T Consensus 46 ~~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE 125 (304)
T PF11583_consen 46 DRPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADE 125 (304)
T ss_dssp TS-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHH
T ss_pred cccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 467887777766777889999999999877654444444444443321 2233 2234567788888999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH-HHhhhhHhHhHHHHHHH-HHH
Q 023028 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFW-LKK 203 (288)
Q Consensus 126 ~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~-l~~ 203 (288)
+.|+.+|.++++..+.. . .+-. ...-+........+....... ......+++ .+.|.+.- ..... ...
T Consensus 126 ~rH~~mf~~~~~~~~~~--~--~l~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~lv~Ee~i~----~~~~~~~~D 195 (304)
T PF11583_consen 126 ARHSLMFARAINRTGRR--R--GLAP-LPPPYPPRRLLRRLARLLPPW-ERGLLFFAFALVAEEIID----AYQREIARD 195 (304)
T ss_dssp HHHHHHHHHHHHHHHHH--T--T-----S--HHHHHHHHHHHTS-SHH-HHHHHHHHHHHHHHHSBH----HHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhhh--c--Cccc-CCCCCchHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHH----HHHHHhhcC
Confidence 99999999999988610 0 0000 111122223333333322211 111222223 35677532 11122 333
Q ss_pred cCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 023028 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (288)
Q Consensus 204 ~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (288)
.++-|-+.++++...+||++|+.|+...+.....+.+.
T Consensus 196 ~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 196 ETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 45778899999999999999999999999999887764
No 17
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.88 E-value=0.0025 Score=56.45 Aligned_cols=163 Identities=17% Similarity=0.044 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH
Q 023028 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK---DSKEKHRLF 150 (288)
Q Consensus 74 ~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~---~~~e~~~~~ 150 (288)
.|++.-++.++..++.+...+-....+-+ .+....+.++++..+.+|+++|..|..--.+.+..+.+ ++..-. -
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k 142 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMASA-YIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--K 142 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--H
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--H
Confidence 46999999999999999998876665544 57888899999999999999999999998888887742 222000 2
Q ss_pred HHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHH
Q 023028 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (288)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~ 229 (288)
..+.++|..+---..+.+.+- ..++++.+|+.. ++|+++..-.|..+-..+..+==..+..++..+..||.+|...+-
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~-~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~ 221 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLV-TYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGD 221 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTT-SSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 346677776554444443332 234678888885 579987766666665445444446788889999999999999999
Q ss_pred HHHHHHHhhch
Q 023028 230 LLYSLLRKRLH 240 (288)
Q Consensus 230 ~l~~~l~~e~~ 240 (288)
.+++.+.++++
T Consensus 222 al~~~~~~~~~ 232 (233)
T PF02332_consen 222 ALFKMALEDDP 232 (233)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 18
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=97.72 E-value=0.0061 Score=59.18 Aligned_cols=178 Identities=15% Similarity=0.033 Sum_probs=114.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh---HHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS---KEKH 147 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~---~e~~ 147 (288)
.+..+++.-.++++..++.+..++-......+ .+.+..++++++..+.+|+.+|.+|+..=.+....+.++- +.
T Consensus 67 ~~~~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~a-~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~-- 143 (465)
T cd01057 67 AYEKVDPRWVEAMKLFLGAITPGEYAAVRGMA-MLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDW-- 143 (465)
T ss_pred ccccCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCh--
Confidence 35678999999999999999988876665554 5778899999999999999999999988777666554310 01
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHH
Q 023028 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 226 (288)
Q Consensus 148 ~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~ 226 (288)
--..+.++|..+.=-..+.+...+ .+..+.+++.. +.|.++=-..|..+...+..+==..+..++.-+..||++|..
T Consensus 144 -~~~~~~~~~~~~~~R~~~ed~~~t-~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~ 221 (465)
T cd01057 144 -AQKAFHGNWYAGAAKRFFFDGFIT-GDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMA 221 (465)
T ss_pred -HHHHHhhCcHHHHHHHHHHHHHhc-CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Confidence 002233556554422233222222 24567778774 578764443444334444332224466677778899999999
Q ss_pred HHHHHHHHHHhhch-HHHHHHHHHHHHH
Q 023028 227 FACLLYSLLRKRLH-WQKVHHMVHEAVE 253 (288)
Q Consensus 227 f~~~l~~~l~~e~~-~~~i~e~~~eave 253 (288)
.+..++..+.+.+. ...+.+-++...-
T Consensus 222 ~g~~ll~~l~~Dp~N~~~lq~wld~w~w 249 (465)
T cd01057 222 NGYPTLVLLENDPDNVPLLQRDLDKAFW 249 (465)
T ss_pred hHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 99999966665432 3334444433333
No 19
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.69 E-value=0.0063 Score=55.62 Aligned_cols=168 Identities=16% Similarity=-0.010 Sum_probs=99.0
Q ss_pred hcCCCCCcccCccc-------cHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccC-----ChHHHHHH
Q 023028 54 QASFWTAEEVDLSQ-------DVQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI-----QIPEARAF 117 (288)
Q Consensus 54 ~~~fW~p~eid~s~-------D~~~w~----~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~-----~~~E~~~~ 117 (288)
...-|.|.++-+-. +..+|. +||+.-+.++...+--=-.+.+.+ ..+...+ ..++...|
T Consensus 24 ~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~-----~~L~~~f~~~~~~~~~w~~w 98 (297)
T cd01050 24 VEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH-----SMLNRLFGLDDESPTAWARW 98 (297)
T ss_pred HhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH-----HHHHHHcCcccccccHHHHH
Confidence 34678887765444 455662 688877765554421111122222 1222222 23788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc--chHHHHHHHHHHHhhhhHhHhH
Q 023028 118 YGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIFFSGS 194 (288)
Q Consensus 118 ~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~f~~~ 194 (288)
.....++|+.|+.+-.+++-.-+. ||.. +... +...+.+-++. +.+....++.-.+.|..- ..+
T Consensus 99 ~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---le~~---------~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT-~v~ 165 (297)
T cd01050 99 VRRWTAEENRHGDLLNKYLYLTGRVDPRA---LERT---------RQYLIGSGFDPGTDNSPYRGFVYTSFQELAT-RIS 165 (297)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCCCHHH---HHHH---------HHHHHhCCCCCCCcccHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999976432 5554 2211 11122222321 112234433334556542 234
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch
Q 023028 195 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (288)
Q Consensus 195 F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~ 240 (288)
+..+.-+++ .-=|-++++...|++||.+|..|...++..+.+..+
T Consensus 166 y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp 210 (297)
T cd01050 166 HRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDP 210 (297)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 444444442 235889999999999999999999999987775444
No 20
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.59 E-value=0.023 Score=52.27 Aligned_cols=167 Identities=10% Similarity=-0.061 Sum_probs=114.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HH
Q 023028 70 QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KH 147 (288)
Q Consensus 70 ~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e--~~ 147 (288)
..+.+|++.-++.++..++-+...+-....+.+ .+......+.++..+.+|+++|..|+.--+++...+.++... -.
T Consensus 88 ~~~~~ld~~w~~~l~~~l~p~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~ 166 (304)
T cd01058 88 GLAEALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGD 166 (304)
T ss_pred CChhhCCHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCch
Confidence 346689999999999999998888865554444 467788899999999999999999999988876666442111 11
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHH
Q 023028 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 226 (288)
Q Consensus 148 ~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~ 226 (288)
.--..+.++|.-+.-=+.+.+.+-. .++++.+++.. ++|+++-.-.|.-+-..+..+==.-+..++..+..||++|..
T Consensus 167 ~~k~~W~~dp~Wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~ 245 (304)
T cd01058 167 AAKEAWEEDPAWQGLRELVEKLLVT-YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRR 245 (304)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHH
Confidence 1223355666554311222222212 34678888874 689876554555443333332234577788899999999999
Q ss_pred HHHHHHHHHHhh
Q 023028 227 FACLLYSLLRKR 238 (288)
Q Consensus 227 f~~~l~~~l~~e 238 (288)
.+..+++.+.++
T Consensus 246 ~~~alvk~l~~~ 257 (304)
T cd01058 246 WTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHcc
Confidence 999999988874
No 21
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.52 E-value=0.0034 Score=47.96 Aligned_cols=111 Identities=18% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
.+...+++|+.+.++..++.+|..|.+.+..++..++.+|...... . .+.........+....+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~~ 85 (130)
T cd00657 19 QLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH------------L-LAAYALPKTSDDPAEALRAA 85 (130)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------H-HHhcccCCCccCHHHHHHHH
Confidence 4566677999999999999999999999999999987655431111 0 00111112223344444444
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
...|.. ....|..+. ....-+.+..+++.+.+||..|..++...
T Consensus 86 ~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 86 LEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567773 223333332 22225889999999999999999987654
No 22
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=96.86 E-value=0.027 Score=52.17 Aligned_cols=169 Identities=14% Similarity=-0.009 Sum_probs=88.7
Q ss_pred cCCCCCcccCcccc-------HHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCC--------hHHHH
Q 023028 55 ASFWTAEEVDLSQD-------VQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--------IPEAR 115 (288)
Q Consensus 55 ~~fW~p~eid~s~D-------~~~w~----~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~--------~~E~~ 115 (288)
+.-|.|.++-+-.+ ..+|. +||+.-+.++... +..=|.+=+ ....+...+. ..+..
T Consensus 27 ~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~---llTEd~LPs--Y~~~l~~~~~~~~~~ga~~~~W~ 101 (330)
T PF03405_consen 27 EKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGN---LLTEDNLPS--YHRELATLFGVRDEDGASDSPWG 101 (330)
T ss_dssp GGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHH---HHHHHTHHH--HHHHHTTSTTT--SSSS--SHHH
T ss_pred hhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHH---HHhhhhhhH--HHHHHHhhcCccccCCCCCCcHH
Confidence 46899977754433 34562 5777666544332 222222111 0112333322 23578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCHHHHHHHHHHHHHhc--cchHHHHHHHHHHHhhhhHhH
Q 023028 116 AFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIH--SSDSFAERLVGFACVEGIFFS 192 (288)
Q Consensus 116 ~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~--~~~~~~~~lv~~~~lEgi~f~ 192 (288)
.|.+...++|+.|+.+-..++-.-+. ||.+.+ +.+...+.+-++ ...+-...++...+-|-.-+
T Consensus 102 ~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE------------~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~- 168 (330)
T PF03405_consen 102 RWVGRWTAEENRHGDALRDYLYVSGRVDPVALE------------RTRMYLITAGFDPGFESDPYLGFVYTSFQERATQ- 168 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCC------------HCCHHHHHH----S-TTHHHHHHHHHHHHHHHHH-
T ss_pred HHcccccccccccHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHH-
Confidence 99999999999999999888853322 443210 011111222222 11112233332234453211
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 023028 193 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (288)
Q Consensus 193 ~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (288)
.++..+.-+++.--=|-++++...|++||.+|..|.+.++..+....|.
T Consensus 169 vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 169 VSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 2333333444333458899999999999999999999999887765553
No 23
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=96.42 E-value=0.5 Score=42.62 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=110.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 023028 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLF 150 (288)
Q Consensus 72 w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~ 150 (288)
-..+|+..+..+.+.+..++-.+-+.+..+.. .....|..|.+.-++..+-+|.-|+..+-.++..+.+ ..++-+-.|
T Consensus 7 ~~~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~ 85 (263)
T PF05138_consen 7 PDEMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDLAF 85 (263)
T ss_dssp TSS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHh
Confidence 34689999999999988888877777777664 6778899999999999999999999999999999933 222211122
Q ss_pred HHHhhCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHH
Q 023028 151 NAIENIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDF 227 (288)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f 227 (288)
..-.. .. |+- ..++ ...+|+..++.. +|+..+..+. .| .+.-.+-++.+.+.|.++|..|..+
T Consensus 86 ~R~~~--~~--rn~---~l~e~p~~dwa~~v~r~------~l~d~~~~~~l~~l-~~ssy~pla~~a~k~~kEe~yH~~h 151 (263)
T PF05138_consen 86 LRDAR--EF--RNL---LLFEQPNGDWADTVARQ------FLFDRAGKVLLEAL-ADSSYEPLAAIAAKILKEEAYHLRH 151 (263)
T ss_dssp HHHTT--CS---SS---GGGGS---SHHHHHHHH------HHHHHHHHHHHHHH-TT-SBHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc--hh--hhh---hhhccCCCCHHHHHHHH------HHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00 000 0111 123455443322 2333444433 23 3455678999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 228 ACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 228 ~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
+..-++.|... .++-++.+.+|++.=-.++..+|
T Consensus 152 ~~~w~~rL~~g--t~es~~r~q~Al~~~wp~~~elF 185 (263)
T PF05138_consen 152 GEDWLRRLGDG--TEESRERMQAALDRLWPYTLELF 185 (263)
T ss_dssp HHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988887622 23445555556554444444444
No 24
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.74 E-value=1.6 Score=39.92 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 023028 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (288)
Q Consensus 75 L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~ 154 (288)
+|+.-|..+.+.+..++-.+-+.+.-.. ......|..|.+.-++..+-+|.=|+..+-.+..+++.+.++ ....+.
T Consensus 17 mp~~yr~~L~r~l~~~AdsEli~a~r~~-eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~e---d~~a~~ 92 (289)
T TIGR02156 17 MPAAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREE---LLDALL 92 (289)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHhccccc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHh
Confidence 7788899999999998887766665444 466778899999999999999999999999999999764333 333222
Q ss_pred hCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 155 NIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 155 ~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
.. +.++.+ .++ ...+|+..++- + +|+.+++++. .|. +.--+-++.+...|++.|+.|..++...
T Consensus 93 r~-----~~~f~n-l~e~P~~dwA~tivr-----~-~l~D~~~~~~~~~L~-~SSy~plA~ia~Ki~KEe~yH~rh~~~w 159 (289)
T TIGR02156 93 TG-----KAKYSS-IFNYPTLTWADIGVI-----G-WLVDGAAIMNQTPLC-RCSYGPYSRAMVRICKEESFHQRQGYEI 159 (289)
T ss_pred cC-----hHhhcc-chhCCCCCHHHHHHH-----H-HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122211 122 22345544332 2 3445555543 232 4556789999999999999999999998
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 232 ~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
+..|.. ..++-++.+.+||+-=--++..+|
T Consensus 160 l~rL~~--GT~esr~r~Q~Ald~~Wp~~~emF 189 (289)
T TIGR02156 160 MLTLAR--GTQEQRQMAQDALNRWWWPSLMMF 189 (289)
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 887763 235566677777776666666555
No 25
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=95.40 E-value=2.2 Score=39.38 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 023028 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (288)
Q Consensus 75 L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~ 154 (288)
+|+.-|..+.+.+..++-.+-+.+.-+. ......|..|.+.-++..+-+|.=|+..+-.+..+++.+.++ ....+.
T Consensus 35 mp~~yr~~L~~~l~~laDseLi~a~r~~-eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e---~~~a~~ 110 (314)
T PRK13778 35 MPDAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREE---LIDDLL 110 (314)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcchhc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHh
Confidence 7777788888888888877766665544 466778889999999999999999999999999999764333 333222
Q ss_pred hCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 155 NIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 155 ~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
. .+.++.. .++ ...+|+..++- + +|+.+++++. .|. +.--+-++.+...|++.|+.|..++...
T Consensus 111 r-----~~~~f~n-~fe~P~~dwAdtvvr-----~-~L~D~a~~~~~~~L~-~sSy~plA~~a~Ki~KEe~yH~rhg~~w 177 (314)
T PRK13778 111 S-----GKAKYSS-IFNYPTLTWADVGVI-----G-WLVDGAAIMNQVPLC-RCSYGPYARAMVRICKEESFHQRQGEEI 177 (314)
T ss_pred c-----chHHhcc-cccCCCCCHHHHHHH-----H-HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222211 122 22345444332 2 2344555543 233 4456778999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 232 ~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
+..|... .++-++.+.+||+.=--++..+|
T Consensus 178 l~rL~~G--T~esr~r~Q~Ald~~Wp~~~emF 207 (314)
T PRK13778 178 LLALARG--TPAQKQMAQDALNRWWWPALMMF 207 (314)
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888642 45567777777776666666555
No 26
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=95.26 E-value=1.6 Score=36.93 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 023028 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (288)
Q Consensus 76 ~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e--~~~~~~~~ 153 (288)
|+.=|++|.++=+-..-++....++.. .+...+ |+-+-=+..-+-||+.|.+.|.-.=+.+.-.|+- -.+.|...
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~ll--P~~~deL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAELL--PDQKDELIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---GGGHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHH-HHHHHC--cccHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 566788999998888888888777765 355554 3444456677889999999998888877544432 11122221
Q ss_pred hhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 154 ENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
..+= .+ .. .......+++.-. ++|. |.-++|.+.. . -.=|-.-++-.-+.+||..|..||-.-+
T Consensus 81 h~nF---q~------A~-~~gk~~tCLlIQaliIE~-FAIaAYniYI--p--VAD~FARkITegVVkDEy~HLNfGe~WL 145 (219)
T PF11266_consen 81 HGNF---QR------AA-AEGKVVTCLLIQALIIEC-FAIAAYNIYI--P--VADPFARKITEGVVKDEYTHLNFGEEWL 145 (219)
T ss_dssp HHHH---HH------HH-HTT-HHHHHHHHHTHHHH-HHHHHHHHHG--G--GS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HH------HH-HcCCeeehHHHHHHHHHH-HHHHHhhhce--e--cccHHHHHHHHHHHhhHHHhcchHHHHH
Confidence 1100 00 01 1122333443332 4554 2223333321 0 0112334566789999999999997654
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHH
Q 023028 233 SLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSL 274 (288)
Q Consensus 233 ~~l~~e~~~~~i~e~~~eave~E~~~~~~~~-~~~~~Gl~~~~ 274 (288)
+.-. +.+++++.+.-++...+-.+.++..- +..++||+.+.
T Consensus 146 k~~f-~~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~ 187 (219)
T PF11266_consen 146 KANF-EQSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEA 187 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 3222 12334444444444444444333322 23456666544
No 27
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.16 E-value=0.17 Score=46.49 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=86.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~--~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~ 148 (288)
+|..|+++.|..+.--|-.-..++ .-|--+-..+...+. +|++.-+++..+-+|++|+-+-+.-+..++..
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 144 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLS------ 144 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcc------
Confidence 588999999987765543322222 112223334555665 99999999999999999999998888877531
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH--HHhhhhHhHhHHHHH-HHHHHc--CCCccHHHHHHHHHhhhhh
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAI-FWLKKR--GLMPGLTFSNELISRDEGL 223 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~~~F~~~-~~l~~~--~~m~g~~~~i~~I~RDE~~ 223 (288)
.+.+.|.+.-. |. -|.-+.|.| ++-|.|-+. =|..+ ..|.+. ..+--+=+-++.=|+||.+
T Consensus 145 -----lDLgfLtk~k~-----YT---fF~PkfIfYatYLSEKIGYw-RYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 210 (355)
T PRK13654 145 -----LDLGFLTKKKK-----YT---FFPPKFIFYATYLSEKIGYW-RYITIYRHLEKHPEHRFHPIFKFFENWCQDENR 210 (355)
T ss_pred -----ccchhhccCCc-----ee---eeCcceeeehhHhHhhhhHH-HHHHHHHHHHhCcccccCchHHHHHHHhcccch
Confidence 12233322110 00 011112323 356777332 23333 366654 3455566667788999999
Q ss_pred HHHHHHHHHH
Q 023028 224 HCDFACLLYS 233 (288)
Q Consensus 224 H~~f~~~l~~ 233 (288)
|+.+...+++
T Consensus 211 HGd~F~~lmr 220 (355)
T PRK13654 211 HGDFFALLMR 220 (355)
T ss_pred hHHHHHHHHh
Confidence 9999998864
No 28
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.57 E-value=0.36 Score=44.32 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=85.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~--~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~ 148 (288)
+|..|+++.|..+.--|-.-..++ .-|--+-..+...+ ++|++.-+++..+-+|++|+-+-+.-+..++..
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 140 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLS------ 140 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCcc------
Confidence 689999999987665543322222 11112223455566 459999999999999999999998888877531
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH--HHhhhhHhHhHHHHH-HHHHHc--CCCccHHHHHHHHHhhhhh
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAI-FWLKKR--GLMPGLTFSNELISRDEGL 223 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~~~F~~~-~~l~~~--~~m~g~~~~i~~I~RDE~~ 223 (288)
.+.+.|.+.-. |. -|.-+.|.| ++-|.|-+. =|..+ ..|.+. ..+--+=+-++.=|+||.+
T Consensus 141 -----lDLgfLtk~rk-----YT---fF~PkfI~YAtYLSEKIGYw-RYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnR 206 (351)
T CHL00185 141 -----LDLGFLTKSRK-----YT---FFSPKFIFYATYLSEKIGYW-RYITIYRHLEKNPEYRIYPIFKFFESWCQDENR 206 (351)
T ss_pred -----ccchhhccCCc-----ee---eecccceehhhHHHhhhhhh-HHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 22233322110 00 011122333 356777332 23333 366654 3444566667778999999
Q ss_pred HHHHHHHHHH
Q 023028 224 HCDFACLLYS 233 (288)
Q Consensus 224 H~~f~~~l~~ 233 (288)
|+.+...+++
T Consensus 207 HGdfF~almr 216 (351)
T CHL00185 207 HGDFFAALLK 216 (351)
T ss_pred hHHHHHHHHh
Confidence 9999998864
No 29
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=94.26 E-value=1.1 Score=35.86 Aligned_cols=105 Identities=12% Similarity=0.013 Sum_probs=68.9
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
..+..-.-+++..++..|+..|..|++-|...+..+++.|. .|.. -..+.....+
T Consensus 25 ~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----------~~~~---------~~~~~~~~l~----- 79 (134)
T cd01041 25 EKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----------GPPI---------GIGDTLENLK----- 79 (134)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------CCCC---------CcchHHHHHH-----
Confidence 44555667889999999999999999999999988876554 1110 0000001111
Q ss_pred HHhhhhH--hHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHH
Q 023028 184 ACVEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (288)
Q Consensus 184 ~~lEgi~--f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (288)
..+++-. ....+.-+.-.+.......++..+..|..||..|......++.
T Consensus 80 ~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 80 AAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112211 1234444455566777899999999999999999997776654
No 30
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=3 Score=35.27 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hCHHHHHH
Q 023028 85 HVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE--NIPCVAQK 162 (288)
Q Consensus 85 ~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~--~~p~l~~k 162 (288)
.+|+.=..++.--..... .++..++++++|..+...+.+|..|...++.++..+.+++..-++...+.. ..+..+.
T Consensus 27 e~L~~Ai~~E~eA~~fY~-~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (176)
T COG1633 27 ELLAIAIRGELEAIKFYE-ELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQP- 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCc-
Confidence 344443333432223333 477889999999999999999999999999999999765422111111111 1111111
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 163 AKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 163 ~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
+ .....+.++.+++- .++++-.....|+...... ..=++...++..+..||.-|.......++.+.
T Consensus 105 ---~-~~~~~~~~~~~~I~--~a~~~E~~t~~~Y~~~~~~--~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 105 ---G-KEMEKSVSYLEAIE--AAMEAEKDTIEFYEELLDE--LVNEEAKKLFKTIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred ---c-cccccchhHHHHHH--HHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 02333334444432 2233322222333322222 22377888999999999999999888877554
No 31
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.09 E-value=0.31 Score=44.25 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHcCC--CccHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 192 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 192 ~~~F~~~~~l~~~~~--m~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
+|||...--++++.+ =|-+++++.+.+|||++|.+|...-+...
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 588888888888764 49999999999999999999987765543
No 32
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=94.05 E-value=1.4 Score=41.55 Aligned_cols=116 Identities=15% Similarity=-0.066 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc--chHHHHHHHHHHHhhhhH
Q 023028 114 ARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIF 190 (288)
Q Consensus 114 ~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~ 190 (288)
...|.....++||.|...-..++-.-+. |+.+.++ .+...+.+-++. ..+....++.-.+-|..-
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~------------t~q~li~~G~d~~~~~~py~~~vYtSFQErAT 224 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK------------TIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 224 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHHHHH------------HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4457888999999999998888764443 5554221 111122222332 123445544334556543
Q ss_pred hHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHH
Q 023028 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQ 242 (288)
Q Consensus 191 f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~ 242 (288)
| .+..-.--++.+.-=|-++++...|+.||.+|-.|.++++..+.+-.|..
T Consensus 225 ~-VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 225 F-ISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred H-HHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 2 22222333444322478899999999999999999999999888655543
No 33
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.01 E-value=0.35 Score=44.58 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHcCC--CccHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 192 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 192 ~~~F~~~~~l~~~~~--m~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
+|||...--+.++.+ =|-+++++.+.+|||++|.+|...-+...
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 588988888988876 89999999999999999999987765543
No 34
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=93.97 E-value=0.37 Score=44.06 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHcCCCcc--HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 192 SGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 192 ~~~F~~~~~l~~~~~m~g--~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
+|||...--+.++.+=++ +++++.+.+|||++|.+|...-+...
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 588988888988865455 99999999999999999987765543
No 35
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=4.9 Score=36.03 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 023028 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY-IKDSKEKHRLFNA 152 (288)
Q Consensus 74 ~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~-~~~~~e~~~~~~~ 152 (288)
.+|+.-|+++.+.++.++-.+-+...-..+ -..+.|.-|.+..++.-+-+|.-|..-+=++.+++ +...++ .+..
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~e-W~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d---~la~ 86 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREGE-WLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGRED---DLAY 86 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCCc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH---HHHH
Confidence 478889999999999998888776655553 55577888999999999999999999999999999 544433 4433
Q ss_pred HhhCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHH
Q 023028 153 IENIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (288)
Q Consensus 153 ~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~ 229 (288)
... + ..+....++- .-+++-.++ + -|++-+++++. .| .+.-.+-++.+...|++-|..|..++.
T Consensus 87 ~r~-g-----~~k~n~~~n~P~~~Wadt~~-~-----~fLvD~~~~~~l~~l-~~ssy~PlA~~a~k~~kEe~fHl~~~~ 153 (265)
T COG3396 87 LRD-G-----RHKRNSLFNLPTGDWADTIV-R-----GFLVDGAAIYQLEAL-ADSSYGPLARAAQKICKEEEFHLRHGK 153 (265)
T ss_pred Hhh-h-----HHHHHHHHcCCCccHHHHHH-H-----HHHHhHHHHHHHHHH-HhccchHHHHHHHHHHHhHHHHHHHHH
Confidence 222 1 1111111221 113432222 2 12334444442 22 234567899999999999999999999
Q ss_pred HHHHHHHhhc
Q 023028 230 LLYSLLRKRL 239 (288)
Q Consensus 230 ~l~~~l~~e~ 239 (288)
..+..+.+.-
T Consensus 154 ~~l~~l~~gT 163 (265)
T COG3396 154 TWLKRLANGT 163 (265)
T ss_pred HHHHHHHhcC
Confidence 9988887543
No 36
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=93.71 E-value=0.82 Score=40.98 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH-HHhhhhHhHh
Q 023028 118 YGFQIAMENIHSEMYSLLLETYIKDSKE---KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSG 193 (288)
Q Consensus 118 ~~~Q~~~E~iH~e~Ys~il~~~~~~~~e---~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~~ 193 (288)
+...+.+|+.|-..+..-+..++.+-++ ...+++...+ +..++..++... ..+|+--+=.
T Consensus 104 ~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~----------------t~~dl~~R~A~vp~~~EArGLD~ 167 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQ----------------TAHDLLARMALVPRVLEARGLDV 167 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH----------------hccCHHHHHHHHHHHHHhhCCCC
Confidence 4478899999999999999999754222 1112222211 111233333333 2566643333
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 023028 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (288)
Q Consensus 194 ~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~ 239 (288)
+=.++--|...|-. .++.+++.|.+||--||.+|..=++.+.+..
T Consensus 168 ~p~~~~k~~~~gD~-~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~ 212 (253)
T PF04305_consen 168 TPFIIEKFRSAGDE-ESAAILEIILRDEIGHVAIGNRWFRYLCEQR 212 (253)
T ss_pred CHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 33333344544443 7889999999999999999999999888643
No 37
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=93.56 E-value=0.46 Score=43.63 Aligned_cols=43 Identities=28% Similarity=0.145 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHcC--CCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 192 ~~~F~~~~~l~~~~--~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
+|||...--++++. .=|-+++++.+.+|||++|.+|....+..
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~d 136 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSD 136 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 58898888888876 45999999999999999999998776554
No 38
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=93.55 E-value=0.8 Score=41.89 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=84.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~--~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~ 148 (288)
+|..|+++.|..+.--|-.-..++ .-|--+-..+...+ ++|.+.-+++..+-+|++|+-+-+.-+..++..
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~------ 134 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLA------ 134 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcc------
Confidence 466799998887665543322222 11112223455555 678899999999999999999998888877531
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH--HHhhhhHhHhHHHHH-HHHHHc--CCCccHHHHHHHHHhhhhh
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAI-FWLKKR--GLMPGLTFSNELISRDEGL 223 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~~~F~~~-~~l~~~--~~m~g~~~~i~~I~RDE~~ 223 (288)
.+.+.|.+.-. |. -|.-+.|.| ++-|.|-+. =|..+ ..|.+. ..+--+=+-++.=|+||.+
T Consensus 135 -----lDLgfLtk~r~-----YT---fF~PkfI~YAtYLSEKIGYw-RYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 200 (337)
T TIGR02029 135 -----LDLGFLTKTRK-----YT---FFRPKFIYYATYLSEKIGYW-RYITIYRHLEENPENQFYPIFKYFESWCQDENR 200 (337)
T ss_pred -----cchhhhccCCc-----ee---eeccceeehhhHhHhhhhhH-HHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 12233322100 00 011122333 356777332 23333 366654 3444566667788999999
Q ss_pred HHHHHHHHHH
Q 023028 224 HCDFACLLYS 233 (288)
Q Consensus 224 H~~f~~~l~~ 233 (288)
|+.+...+++
T Consensus 201 HGd~F~~lmr 210 (337)
T TIGR02029 201 HGDAFAALMR 210 (337)
T ss_pred hHHHHHHHHh
Confidence 9999998754
No 39
>PRK14983 aldehyde decarbonylase; Provisional
Probab=93.26 E-value=1.7 Score=37.17 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 023028 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (288)
Q Consensus 76 ~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e--~~~~~~~~ 153 (288)
|+.=|++|.++=+-..-++.-..+|.. .+...+ |+-+-=+..-+-||+.|.+.|.-.=+.+.-.|+- -.+.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~ll--P~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYI-SLATLL--PEHAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHH-HHHHHC--cccHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 455678888887777777776666665 355544 4445556777889999999997766665433322 12233322
Q ss_pred hhCHHHHHHHHHHHHHhccchHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 154 ENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
..+= .+ ... ......+++.- .++|.. .-++|.+..= -.=|-.-++-.-+.+||..|..||-.=+
T Consensus 91 h~nF---q~------A~~-egkv~TCLlIQaLiIE~F-AIaAYniYIp----VAD~FARkITegVVkDEY~HLN~Ge~WL 155 (231)
T PRK14983 91 HGNF---QK------AAA-EGKVVTCLLIQALIIEAF-AIAAYNIYIP----VADPFARKITEGVVKDEYLHLNFGEEWL 155 (231)
T ss_pred HHHH---HH------HHh-cCCeeehHHHHHHHHHHH-HHHHHhhccc----cccHHHHHHHHhHHhhHHHhcchHHHHH
Confidence 1110 00 011 11122233322 345641 2223322210 0112334566778999999999997654
Q ss_pred H
Q 023028 233 S 233 (288)
Q Consensus 233 ~ 233 (288)
+
T Consensus 156 k 156 (231)
T PRK14983 156 K 156 (231)
T ss_pred H
Confidence 3
No 40
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=92.98 E-value=0.11 Score=47.70 Aligned_cols=44 Identities=27% Similarity=0.166 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHcC--CCccHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 192 ~~~F~~~~~l~~~~--~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
+|||...--++++. .=|-+++++.+.+|||++|.+|...-+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 58888888888876 459999999999999999999987766543
No 41
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=92.84 E-value=0.77 Score=41.77 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=83.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~--~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~ 148 (288)
+|..++++.|..+.--|-.-..++ .-|--+-..+...+. +|++.-+++..+-+|++|+-+-+.-+..++..
T Consensus 52 ~~~~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 124 (323)
T cd01047 52 AADKIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLA------ 124 (323)
T ss_pred hhhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcc------
Confidence 366688888886665443322222 112223334556664 49999999999999999999998888877531
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH--HHhhhhHhHhHHHHH-HHHHHc--CCCccHHHHHHHHHhhhhh
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAI-FWLKKR--GLMPGLTFSNELISRDEGL 223 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~~~F~~~-~~l~~~--~~m~g~~~~i~~I~RDE~~ 223 (288)
.+.+.|.+.-. |. -|.-+.|.| ++-|.|-+. =|..+ ..|.+. ..+--+=+-++.=++||.+
T Consensus 125 -----lDLgfLtk~r~-----YT---fF~PkfI~YatYLSEKIGYw-RYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 190 (323)
T cd01047 125 -----LDLGFLTKTRK-----YT---FFKPKFIFYATYLSEKIGYW-RYITIYRHLERNPENQFHPIFKYFENWCQDENR 190 (323)
T ss_pred -----cchhhhccCCc-----ee---eeCccceeehhHhhhhhhhH-HHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 22233322110 00 011122323 356777332 23333 366654 3444566667778999999
Q ss_pred HHHHHHHHHH
Q 023028 224 HCDFACLLYS 233 (288)
Q Consensus 224 H~~f~~~l~~ 233 (288)
|+.+...+++
T Consensus 191 HGd~F~~lmr 200 (323)
T cd01047 191 HGDFFAALLR 200 (323)
T ss_pred hhHHHHHHHh
Confidence 9999998864
No 42
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=92.53 E-value=0.64 Score=42.75 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=83.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~--~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~ 148 (288)
+|..|+++.|..+.--|-.-..++ .-|--+-..+...+ .+|.+.-+++..+-+|++|+-+-+.-+..++..
T Consensus 68 ~~~~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~------ 140 (357)
T PLN02508 68 AADKIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLA------ 140 (357)
T ss_pred chhhCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCcc------
Confidence 466799888886665443322222 11111223455566 459999999999999999999998888877531
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH--HHhhhhHhHhHHHHH-HHHHHc--CCCccHHHHHHHHHhhhhh
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAI-FWLKKR--GLMPGLTFSNELISRDEGL 223 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~~~F~~~-~~l~~~--~~m~g~~~~i~~I~RDE~~ 223 (288)
.+...|.+.-. |. -|.-+.|.| ++-|.|-+. =|..+ ..|.++ ..+--+=+-++.=|+||.+
T Consensus 141 -----lDLgfLtk~rk-----YT---fF~PkfIfYAtYLSEKIGYw-RYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnR 206 (357)
T PLN02508 141 -----LDLGFLTKNRK-----YT---FFKPKFIFYATYLSEKIGYW-RYITIYRHLQANPDYQLYPIFKYFENWCQDENR 206 (357)
T ss_pred -----ccchhhcccCc-----ee---eeCcceeehhhHhhhhhhhh-hHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 12233322110 00 011111223 356777332 23333 366654 3444566667778999999
Q ss_pred HHHHHHHHHH
Q 023028 224 HCDFACLLYS 233 (288)
Q Consensus 224 H~~f~~~l~~ 233 (288)
|+.+...+++
T Consensus 207 HGd~Fa~lmr 216 (357)
T PLN02508 207 HGDFFSALLK 216 (357)
T ss_pred hHHHHHHHHH
Confidence 9999998864
No 43
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=90.90 E-value=6.2 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~ 140 (288)
.++..+++++++.++...+.+|-.|.+.+..++..++
T Consensus 19 ~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 19 ELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677789999999999999999999999999999885
No 44
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=89.59 E-value=8.7 Score=30.19 Aligned_cols=102 Identities=18% Similarity=0.067 Sum_probs=63.2
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHH-HHHHHHhccchHHHHHHH
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKA-KWALDWIHSSDSFAERLV 181 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~-~~i~~~~~~~~~~~~~lv 181 (288)
..++..+++|+.+-.+...+-+|.-|.+.+..++...+.+|. + +.++... .++.+... . .++.++.
T Consensus 18 ~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~l~~~~g-~-~~~l~~~ 84 (125)
T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-R----------PKLKIFFYKLLARIFG-P-TFVLKLL 84 (125)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-C----------ccHHHHHHHHHHHHHh-H-HHHHHHH
Confidence 356777899999999999999999999999999999876542 1 1111100 01111111 1 1111111
Q ss_pred HHHHhh--hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 182 GFACVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 182 ~~~~lE--gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
.-.| ++.||...+-. ...+..|..||..|......+
T Consensus 85 --~~~E~~ai~~Y~~~~~~------------~~~~~~Ii~dE~~H~~~L~~~ 122 (125)
T cd01044 85 --ERGEERAIEKYDRLLEE------------RPELKEIIADELEHEEVLIAL 122 (125)
T ss_pred --HHhHHhhHhhHHhhhhh------------hHHHHHHHHHHHHHHHHHHHh
Confidence 1234 67676555433 446788999999999865544
No 45
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=88.34 E-value=12 Score=30.34 Aligned_cols=111 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
.++....+++.+..+...+.+|-.|.+....++..++++|.-....-... .+ |.........+... ++-+
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~--~~-------~~~~~~~~~~~~~~-~L~~ 108 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKF--TY-------WTGKYVNYGESIKE-MLKL 108 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccC--Cc-------CCccccCCccCHHH-HHHH
Confidence 44445578999999999999999999999999999987764211000000 00 11111111112211 2222
Q ss_pred H-Hhh--hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHH
Q 023028 184 A-CVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (288)
Q Consensus 184 ~-~lE--gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~ 230 (288)
. -.| ++-||...+- .-.=+.+..++..|..||-.|......
T Consensus 109 ~~~~E~~ai~~Y~~~~~------~~~d~~~r~ll~~I~~eE~~H~~~L~~ 152 (154)
T cd07908 109 DIASEKAAIAKYKRQAE------TIKDPYIRALLNRIILDEKLHIKILEE 152 (154)
T ss_pred HHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 233 4545444332 123378899999999999999885543
No 46
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=87.62 E-value=2.5 Score=32.96 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=61.7
Q ss_pred HHccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHH
Q 023028 105 FLNDIQI--PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (288)
Q Consensus 105 l~~~~~~--~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (288)
++..+++ |+++..+..-+.+|..|...+..++....+.... .+......+........ ....++ ...+.
T Consensus 20 ~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~-~~~l~ 90 (137)
T PF02915_consen 20 LAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP---PFLEEKVEYSFFPKLEE-----ETDENL-EEALE 90 (137)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT---HCHCCCCCHCCCCTCCS-----SHHHHH-HHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc---chhhhhhhhhhcchhhh-----hhhHHH-HHHHH
Confidence 4444555 8999999999999999999999999988543211 00000000000000000 000111 12122
Q ss_pred HH-Hhh--hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 183 FA-CVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 183 ~~-~lE--gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
.. ..| ++.||.- ++..---|...+.+..|++||..|......+
T Consensus 91 ~a~~~E~~~~~~Y~~------~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 91 MAIKEEKDAYEFYAE------LARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHTHHHHHHH------HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 122 3333322 2333334788899999999999999977655
No 47
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=86.81 E-value=23 Score=31.71 Aligned_cols=144 Identities=19% Similarity=0.125 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhCH
Q 023028 81 HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLFNAIENIP 157 (288)
Q Consensus 81 ~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~---~~~~e~~~~~~~~~~~p 157 (288)
+.+..+-..|-.++....+..- ...+.+++|+.+.=...++.+|+.|++.-..+.+.+. .+...
T Consensus 27 ~~~nalS~~fP~GE~ffi~svr-~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~~~~------------ 93 (253)
T PF10118_consen 27 HFFNALSLLFPEGERFFIRSVR-RARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYDVRP------------ 93 (253)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH------------
Confidence 3444444456667766665544 5778899999998888888999999999888887662 12111
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 158 CVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 158 ~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
.+........+.+..-.+...+|...+++|-.-..-|=..+- .+...|.=|.+..+..|=.--|.=|.+.+--+++.+
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~La~taalEH~TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVAfDvy~~~ 173 (253)
T PF10118_consen 94 FLEKMEKLFLKFLEKRLSLKFQLAYTAALEHFTAVLAEWLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVAFDVYQAV 173 (253)
T ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111122222122334444445788753322211111 112246668899999999999999988887777776
Q ss_pred Hh
Q 023028 236 RK 237 (288)
Q Consensus 236 ~~ 237 (288)
..
T Consensus 174 ~g 175 (253)
T PF10118_consen 174 GG 175 (253)
T ss_pred cC
Confidence 64
No 48
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=83.97 E-value=16 Score=30.15 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 023028 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGI 189 (288)
Q Consensus 110 ~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi 189 (288)
..++.+..+...+.+|--|.+..+..+..+++++.. ..| +-+ ++..+.+...-+-.....|.-
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw--~~~-----------yv~~~~d~~~~L~~ni~aE~~ 113 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW--TAA-----------YIQSSGNLVADLRSNIAAESR 113 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC--CCc-----------ccCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999765432 111 111 111111222222212223321
Q ss_pred HhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023028 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (288)
Q Consensus 190 ~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (288)
.-..+.-++.... =|++..++.+|..||..|..-...++..+
T Consensus 114 -Ai~~Y~~l~~~~~---Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 114 -ARLTYERLYEMTD---DPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred -HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112222222333 39999999999999999999877776543
No 49
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=77.83 E-value=11 Score=30.62 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=48.1
Q ss_pred HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------------------HHHHHHHHHHHHHHHHHHHH
Q 023028 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------------------WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 200 ~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------------------~~~i~e~~~eave~E~~~~~ 260 (288)
.+..++.-|.+.+.+..+++||..|..+...++..+-..|. ...+.++++.++..|..-++
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~ 118 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIA 118 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHH
Confidence 34445567999999999999999999999999887654332 12466789999999998775
Q ss_pred H
Q 023028 261 E 261 (288)
Q Consensus 261 ~ 261 (288)
.
T Consensus 119 ~ 119 (154)
T cd07908 119 K 119 (154)
T ss_pred H
Confidence 3
No 50
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=75.01 E-value=24 Score=32.91 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=36.5
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e 145 (288)
+++....+|-+...++..+.+|+.|..+|++++..++. ||+.
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~ 218 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDG 218 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHH
Confidence 56666789999999999999999999999999998864 6665
No 51
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=71.78 E-value=2.1 Score=25.28 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 023028 256 TQFVCEALPCALIGMNSSLMSQYIKFV 282 (288)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ 282 (288)
.+|+.-+..-...|++.++++.|+++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345543333345899999999999874
No 52
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=71.58 E-value=22 Score=33.73 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e 145 (288)
.+++....+|-+....+..+.+|+.|..+|+++++.++. ||++
T Consensus 232 arlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 232 ARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 457777778999999999999999999999999998875 7776
No 53
>PF13668 Ferritin_2: Ferritin-like domain
Probab=71.22 E-value=49 Score=26.09 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 023028 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVE 187 (288)
Q Consensus 108 ~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lE 187 (288)
...+++.+.++.....+|..|.+..+..+. +..+-. ..-|+. ..+ -+.++.++... -..+|
T Consensus 34 ~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~-~~~~~~-~~~------------~~~~~~~~L~~---A~~~E 94 (137)
T PF13668_consen 34 AALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVP-PPAYDF-PFD------------PFTDDASFLRL---AYTLE 94 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC-CCcccc-ccC------------CCCCHHHHHHH---HHHHH
Confidence 467889999999999999999999999986 222100 001222 000 11222233211 13456
Q ss_pred hh--HhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 188 GI--FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 188 gi--~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
.+ -+|.|.+.. .. =|.+..+..-|..+|..|....+.++
T Consensus 95 ~~~~~~Y~g~~~~---~~---~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 95 DVGVSAYKGAAPQ---IE---DPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 333333332 12 36788999999999999999877654
No 54
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=69.57 E-value=43 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~ 139 (288)
.+...+.+|.++..+.+-+.+|..|.+.|...++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677899999999999999999999999998865
No 55
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=69.04 E-value=34 Score=31.47 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 023028 105 FLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (288)
Q Consensus 105 l~~~~--~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e 145 (288)
+.... ..|-++..++..+.+|+.|-.+|+++++.++. +|+.
T Consensus 169 l~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~ 212 (297)
T cd01050 169 TARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDG 212 (297)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 34444 88999999999999999999999999998764 5554
No 56
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=67.24 E-value=22 Score=26.75 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcC
Q 023028 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205 (288)
Q Consensus 126 ~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~ 205 (288)
..|+..|.++++.++.|++... .-+.+ .|....-.++..........+...+-++...|++.-...=...-.+.+-|
T Consensus 16 ~~H~~Lf~~~L~~~Gi~~~~~~-~~~~~--~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 16 RSHPELFRRFLRALGIDDEPGA-YRDPY--PPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRLG 92 (106)
T ss_dssp G-HHHHHHHHHHHTT-----TT--------HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHcCCCCcccc-ccccC--CHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHcC
Confidence 4799999999999987655310 11111 12222333333333222233445544456788765433222223444443
No 57
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=63.59 E-value=88 Score=26.20 Aligned_cols=108 Identities=20% Similarity=0.248 Sum_probs=63.1
Q ss_pred HHHhhh-HHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 023028 96 IVLENL-AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLFNAIENIPCVAQKAKWALDWIH 171 (288)
Q Consensus 96 ~v~~~l-~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~---~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~ 171 (288)
.+++.+ ....+..-.-|++.-.+-.++..|.+|+.....++.-+. .|+.+ .+-.. ++
T Consensus 19 a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~e--Nl~~a-----------------ie 79 (166)
T COG1592 19 AVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRE--NLEEA-----------------IE 79 (166)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH--HHHHH-----------------Hc
Confidence 344433 345666777899999999999999999999988887542 12111 00000 11
Q ss_pred cchHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 172 SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 172 ~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
.+.+ |--..|..|+-.. ...| ......-++.+.|||.+|......++..+.
T Consensus 80 -GE~~----------e~~emyp~~ae~A--~~~g-~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 80 -GETY----------EITEMYPVFAEVA--EEEG-FKEAARSFRAAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -cchH----------HHHHhChHHHHHH--HHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 0000111111110 1111 467788889999999999998877766553
No 58
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=62.95 E-value=79 Score=25.42 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=41.7
Q ss_pred CCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------h--HHHHHHHHHHHHHHHHHHHH
Q 023028 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------H--WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 205 ~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~--~~~i~e~~~eave~E~~~~~ 260 (288)
.-+||++..++..+.+|..|..-...-+..+-..+ + ...+.+++..+++.|+....
T Consensus 32 ~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~~~~~l~~al~~E~~~~~ 97 (156)
T cd01055 32 KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFESLLEVFEAALEHEQKVTE 97 (156)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999996665554432111 1 23477889999999988665
No 59
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=61.38 E-value=51 Score=26.36 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=46.3
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
+..-+|+++..++-+..||..|..-....+..+-..|+ ...+.++++.+++.|...+..
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~ 99 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPEMLENDLALEYEAIAA 99 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999988887776654432 124778999999999877764
No 60
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=60.59 E-value=79 Score=28.42 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcc-chHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 157 PCVAQKAKWALDWIHS-SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 157 p~l~~k~~~i~~~~~~-~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
|.-+++.+|-. +.+ ......+++++ ..++++.--..-..+ ...=--|..........-.|++|..+.++++..
T Consensus 37 ~~~~D~~~~~~--Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i---~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~ 111 (281)
T PF00268_consen 37 DMSKDIKDWKK--LSEEEREAYKRILAFFAQLDSLVSENLLPNI---MPEITSPEIRAFLTFQAFMEAIHAESYSYILDS 111 (281)
T ss_dssp -GGGHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHh--CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555543 332 23455666665 567876543332222 222223778888889999999999999999998
Q ss_pred HH
Q 023028 235 LR 236 (288)
Q Consensus 235 l~ 236 (288)
+.
T Consensus 112 l~ 113 (281)
T PF00268_consen 112 LG 113 (281)
T ss_dssp HS
T ss_pred hc
Confidence 87
No 61
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=53.00 E-value=1.1e+02 Score=23.90 Aligned_cols=96 Identities=17% Similarity=-0.002 Sum_probs=59.2
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
..+..-.-|++..++..|+..|..|++.|..++..+-+++.+ .+.....
T Consensus 25 ~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i~~~~~~---~le~a~~---------------------------- 73 (123)
T cd01046 25 RVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKVSEDTKE---NLEMMLE---------------------------- 73 (123)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH---HHHHHHH----------------------------
Confidence 345556678899999999999999999998765332101111 1111100
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (288)
.|.-- ...+.-+...++.-....+...++.|.+||..|......++.
T Consensus 74 --~E~~~-~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 74 --GEAGA-NEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred --hHHHH-HHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01000 011222233455556788899999999999999998776654
No 62
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=50.93 E-value=97 Score=23.60 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHhhhhhHHHHHHHHHHHHH--hhch----------------------HHHHHHHHHHHHHHHHHHHH
Q 023028 208 PGLTFSNELISRDEGLHCDFACLLYSLLR--KRLH----------------------WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 208 ~g~~~~i~~I~RDE~~H~~f~~~l~~~l~--~e~~----------------------~~~i~e~~~eave~E~~~~~ 260 (288)
|++..++..+++||..|......++..+. .-|+ .....+++..++..|..-+.
T Consensus 27 ~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~ 103 (139)
T cd01045 27 PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998887763 1111 12245688888888887665
No 63
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=50.10 E-value=1.3e+02 Score=23.93 Aligned_cols=110 Identities=12% Similarity=-0.094 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
....-+.+..++-.|+.+|-.|++.....+..+++.|.-. . .|.+.. ..+.....+.. .-.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~-----~---~~~~~~--------~~~~~~~l~~~---l~~ 92 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQ-----R---LGKLRI--------GEDVPEMLEND---LAL 92 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----c---CCCCCc--------CCCHHHHHHHH---HHH
Confidence 4456678889999999999999999999999998765321 0 011100 00111111111 112
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
|. .....+.-+.-.+....-+.++..++.+.+||..|..+...++..+.
T Consensus 93 E~-~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~ 141 (153)
T cd00907 93 EY-EAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLID 141 (153)
T ss_pred HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12233333444455566789999999999999999999988877665
No 64
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=46.64 E-value=38 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=27.2
Q ss_pred cCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 023028 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (288)
Q Consensus 204 ~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (288)
.+.-......|+-|.++|.+|....+++++.+-..
T Consensus 24 ~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 24 PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp -TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444588999999999999999999999887644
No 65
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=46.47 E-value=1.3e+02 Score=23.56 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=40.6
Q ss_pred HHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---c--hHHHHHHHHHHHHHHHH
Q 023028 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR---L--HWQKVHHMVHEAVEIET 256 (288)
Q Consensus 202 ~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e---~--~~~~i~e~~~eave~E~ 256 (288)
+++.-++|++..++.++.+|..|..-....+..+-.. | +...+.+.+..+.+.|.
T Consensus 27 a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E~ 86 (134)
T cd01041 27 ARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGET 86 (134)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhhH
Confidence 4445589999999999999999998776666555322 1 23457777888888776
No 66
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=46.17 E-value=23 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=17.8
Q ss_pred ccHHHHhcCCHHHHHHHHHHHH
Q 023028 67 QDVQHWERLLDSEKHFISHVLA 88 (288)
Q Consensus 67 ~D~~~w~~L~~~er~~~~~~l~ 88 (288)
+.+.+|.+|++.+|..+...+.
T Consensus 25 dEI~~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILARLR 46 (51)
T ss_pred HHHHHHhhCCHHHHHHHHHHHH
Confidence 4578999999999998776554
No 67
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=45.71 E-value=60 Score=23.75 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=40.0
Q ss_pred CccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------------HHHHHHHHHHHHHHHHHHHH
Q 023028 207 MPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------------WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 207 m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------------~~~i~e~~~eave~E~~~~~ 260 (288)
.|++..++..+..||..|......++..+...++ .....+.+..++..|.....
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~ 94 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAEALRAALEVEARAIA 94 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCccCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988877643332 12244667777777775554
No 68
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=45.64 E-value=2.2e+02 Score=25.28 Aligned_cols=143 Identities=11% Similarity=0.024 Sum_probs=89.0
Q ss_pred HHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 023028 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (288)
Q Consensus 105 l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (288)
.....|..|.+.-++..+-+|.=|++.+-.+...+.+..++ -+.. ...|.- -|+-.+.+. ...+|+..++-
T Consensus 15 W~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~ed---~La~-~R~~~~-frn~~l~e~--P~gdwa~tv~r-- 85 (237)
T TIGR02158 15 WCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDED---TLAF-FRDEAE-FRNLRLTEL--PNGDFALTIAR-- 85 (237)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHHH-hcChHH-hhhhHHHhC--CCCCHHHHHHH--
Confidence 44567788999999999999999999999999999653221 2221 122211 112112111 12345544332
Q ss_pred HhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 023028 185 CVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262 (288)
Q Consensus 185 ~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~ 262 (288)
-+|+..+..+. .| .+.--+-++.+..+|++.|..|..++...+..|... .++-++.+.+|++-=--++..+
T Consensus 86 ----~~l~d~~~~~~l~~L-~~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~g--t~es~~r~Q~Ald~~wp~~~el 158 (237)
T TIGR02158 86 ----QFLYDAYKVLLLEAL-TQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLG--TEESHRRLQEALNELWPYTAEL 158 (237)
T ss_pred ----HHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555443 22 245568899999999999999999999988877643 3444555666666555555444
Q ss_pred c
Q 023028 263 L 263 (288)
Q Consensus 263 ~ 263 (288)
|
T Consensus 159 F 159 (237)
T TIGR02158 159 F 159 (237)
T ss_pred c
Confidence 4
No 69
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=44.44 E-value=96 Score=28.56 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhc-cchHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 157 PCVAQKAKWALDWIH-SSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 157 p~l~~k~~~i~~~~~-~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
|.-+++.+|- .+. +...+...++++ ..++++.--.+-..+ ...=--|............|++|....++++..
T Consensus 40 ~~s~D~~dw~--~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~---~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~t 114 (324)
T PRK09614 40 PLSNDLKDWK--KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL---MPDITTPEEEAVLANIAFMEAVHAKSYSYIFST 114 (324)
T ss_pred cccchHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555552 232 233456666666 567776553322222 111112777888899999999999999999987
Q ss_pred HHh
Q 023028 235 LRK 237 (288)
Q Consensus 235 l~~ 237 (288)
+..
T Consensus 115 l~~ 117 (324)
T PRK09614 115 LCS 117 (324)
T ss_pred cCC
Confidence 753
No 70
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=44.12 E-value=1.4e+02 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLL 135 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~i 135 (288)
.++..+++|+++..+...+.+|..|.+.+..+
T Consensus 105 ~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 105 ELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777889999999999999999998887654
No 71
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=41.24 E-value=2.1e+02 Score=24.01 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=36.9
Q ss_pred cCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-----------ch--HHHHHHHHHHHHHHHHHHHH
Q 023028 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-----------LH--WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 204 ~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-----------~~--~~~i~e~~~eave~E~~~~~ 260 (288)
..=|||++.-++-=+.+|..|.- .+++.+... |+ ..-..++++.+.++|.....
T Consensus 33 ~~~l~G~A~f~~~qa~EE~~H~~---k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt~ 99 (167)
T COG1528 33 SESLPGFAKFLRAQAQEELTHAM---KLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVTS 99 (167)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999976 555555531 11 13356666666666665554
No 72
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=40.74 E-value=1.7e+02 Score=22.72 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 023028 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 201 l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~ 260 (288)
.++..-+|+++..++.+...|..|......++. ..+ ..+.+.+..+++.|..-..
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~----~i~-~~~~~~le~a~~~E~~~~~ 80 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELLG----KVS-EDTKENLEMMLEGEAGANE 80 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc-ccHHHHHHHHHHhHHHHHH
Confidence 355566899999999999999999986665432 222 4566677777776665443
No 73
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=40.27 E-value=1.6e+02 Score=27.22 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhc-cchHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 157 PCVAQKAKWALDWIH-SSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 157 p~l~~k~~~i~~~~~-~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
|--+++.+|- + +. +...+..+++++ +.++++..-.+-..++.-. . -|.........+--|++|....++++..
T Consensus 40 ~ls~D~~dw~-~-Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~--~-~~e~~~~l~~~~~~E~iHs~sYs~il~t 114 (322)
T PRK13967 40 PLSNDLASWQ-T-LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA--V-TPHEEAVLTNMAFMESVHAKSYSSIFST 114 (322)
T ss_pred CchhhHHHHH-h-CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566663 2 33 233466777776 5678877644432222111 1 2556677788888999999999999998
Q ss_pred HHh
Q 023028 235 LRK 237 (288)
Q Consensus 235 l~~ 237 (288)
+..
T Consensus 115 l~~ 117 (322)
T PRK13967 115 LCS 117 (322)
T ss_pred hCC
Confidence 854
No 74
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=40.16 E-value=87 Score=28.60 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=44.6
Q ss_pred HHHhcCCCCCcccCccccHH-HHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHH
Q 023028 51 KKAQASFWTAEEVDLSQDVQ-HWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIH 128 (288)
Q Consensus 51 kk~~~~fW~p~eid~s~D~~-~w~-~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH 128 (288)
..+..+-|+..-|.-+.|.. |.. ++.- + ..++..-.++.....+|.+|-.+++-+..|.+|
T Consensus 121 ~ds~G~PWt~~yv~~sGdl~aDL~~NiaA----------------E-~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH 183 (283)
T PF05067_consen 121 VDSNGVPWTAAYVQASGDLIADLRSNIAA----------------E-QRARLQYERLYEMTDDPGVKDMLSFLLAREIVH 183 (283)
T ss_dssp B-TTS-B-BGGG----S-HHHHHHHHHHH----------------H-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccchhhhhcCCHHHHHHHHHHH----------------H-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 34556789988888777764 221 2211 1 112334457888899999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 023028 129 SEMYSLLLETYI 140 (288)
Q Consensus 129 ~e~Ys~il~~~~ 140 (288)
...|..-++++.
T Consensus 184 ~~~f~~ALe~l~ 195 (283)
T PF05067_consen 184 QQQFGKALEELQ 195 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999884
No 75
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=39.81 E-value=2.8e+02 Score=24.79 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (288)
.....++++ +.++++.--..-..+.... --|.........+-+|++|+.+.++++..+...
T Consensus 46 ~~~~~~la~~~~~d~~v~~~~~~~~~~~~---~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~ 107 (288)
T cd01049 46 HFIKRVLAFLAALDSIVGENLVELFSRHV---QIPEARAFYGFQAFMENIHSESYSYILDTLGKD 107 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555555 5677764332221111111 136777888899999999999999999888643
No 76
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=39.63 E-value=3.5e+02 Score=25.98 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=85.2
Q ss_pred cCccccH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 63 VDLSQDV--QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (288)
Q Consensus 63 id~s~D~--~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~ 140 (288)
|.+.+.+ .-|+.+|.+-|..+.+++....--+-.-.+... .+...+++---...+.....+|.+|.-+-.+++...+
T Consensus 86 I~fG~hkGe~awqevPgE~r~~L~riIv~QgDtEpASVEQqr-~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~F 164 (471)
T TIGR03225 86 IPFGEHKGEPAWQEVPGEYRSMLRRLIVIQGDTEPASVEQQR-HLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYF 164 (471)
T ss_pred eccccccccchHhhCCHHHHHHHHHHHhhccCCCchhHHHHH-HhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454443 569999999999999998654333322112211 2333344443333444455788999999999995554
Q ss_pred C-Ch-HHHHHHHHHHh---hCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHH
Q 023028 141 K-DS-KEKHRLFNAIE---NIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSN 214 (288)
Q Consensus 141 ~-~~-~e~~~~~~~~~---~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i 214 (288)
+ |- ++-+++...-. ++|.+ ...++.+.+--...++|. +.-.. |-.-+..+++.+--| ++...
T Consensus 165 G~dGreeAe~LL~rrsGd~d~PRi-------L~AFN~~t~dWlsffmFT~ftDRd----Gk~QL~alaeS~FdP-LaRt~ 232 (471)
T TIGR03225 165 GRDGREEAEALLRRRSGDADNPRI-------LGAFNEKTPDWLSFFMFTYFTDRD----GKMQLAALAESGFDP-LSRTC 232 (471)
T ss_pred CCccHHHHHHHHHhhcCCCCCcch-------hhhccCCCccHHHHhHhheeeccc----chhhHHHHHhcCCch-Hhhhh
Confidence 4 32 22222322211 12221 112221111123334443 23332 333344566665444 56666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 023028 215 ELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 215 ~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
+.+...|..|.-+|-.=+..+.
T Consensus 233 rfMltEEahHmfvGetGv~rvi 254 (471)
T TIGR03225 233 RFMLTEEAHHMFVGESGVGRVI 254 (471)
T ss_pred HHHhhhhHhHhhhhhHHHHHHH
Confidence 8999999999999875444333
No 77
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=38.74 E-value=2.3e+02 Score=23.65 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=93.4
Q ss_pred HHccCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 105 FLNDIQIPEAR-AFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 105 l~~~~~~~E~~-~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
+....++++.. .++.........+.+.+..+.+.++.+.++ ...+.-.|..+.-.+++.+.... .++...++++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~p~~~~y~~~l~~~a~~-~~~~~~l~al 125 (210)
T PF03070_consen 51 LASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISRED----LENIEPSPATRAYTDFLLSLAQT-GSLAEGLAAL 125 (210)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH----HHHSTC-HHHHHHHHHHHHHHHH-SSHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHhhhhhhHHHHHHHHHHHHhcc-CCHHHHHHHH
Confidence 44566777666 555555555566788888889998765554 33345667887878888766432 2466777766
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCC-Ccc--HHHHHHHHHhhhh-hHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGL-MPG--LTFSNELISRDEG-LHCDFACLLYSLLRKRLH---WQKVHHMVHEAVEIET 256 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~-m~g--~~~~i~~I~RDE~-~H~~f~~~l~~~l~~e~~---~~~i~e~~~eave~E~ 256 (288)
..+|.++...+ -.+..... .++ ...-++.=.-++- -++.....+++.+....+ .+++.+++..+++.|.
T Consensus 126 ~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E~ 201 (210)
T PF03070_consen 126 LPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELEY 201 (210)
T ss_dssp HHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 65555433322 12222221 222 4555555555554 346666677777765544 4778899999999999
Q ss_pred HHHHHhc
Q 023028 257 QFVCEAL 263 (288)
Q Consensus 257 ~~~~~~~ 263 (288)
.|-+.++
T Consensus 202 ~Fwd~a~ 208 (210)
T PF03070_consen 202 DFWDAAY 208 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
No 78
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=37.81 E-value=3.1e+02 Score=24.77 Aligned_cols=149 Identities=14% Similarity=0.038 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 023028 78 SEKHFISHVLAF-FAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENI 156 (288)
Q Consensus 78 ~er~~~~~~l~~-l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~ 156 (288)
..+..+..+|+. |-.++....+.+ ....+.+.+|..+-=..-++.+|++|++.-+.+.+-+.. . -+.. -
T Consensus 35 p~~T~vfNaLs~LlP~GE~fFvd~v-~a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a---~---~~p~---~ 104 (280)
T COG3687 35 PVATHVFNALSLLLPAGERFFVDSV-KAYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDA---Q---GTPF---A 104 (280)
T ss_pred hHHHHHHHHHHHhccchhHHHHHHH-HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c---CCch---H
Confidence 344444444443 344554444443 246667778777766677778899999998888876621 0 0010 1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHH-HHhhhhHhHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHH
Q 023028 157 PCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (288)
Q Consensus 157 p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (288)
+.+..+.+-+..-+....+..+. +++ +++|-.-..-+=.++- -+...|-=|....+-+|=.+.|.-|...+--++.
T Consensus 105 e~~~~r~erll~~~~~~~~r~~q-~a~~aAlEHfTA~ma~~il~~~~l~~~~~dP~m~~LwRWHa~EE~EHkaVAyDv~~ 183 (280)
T COG3687 105 EQIAWRFERLLGESPRGSPRLEQ-VAIIAALEHFTAVMAEWILEHPQLLLVGADPVMLDLWRWHAAEEVEHKAVAYDVFK 183 (280)
T ss_pred HHHHHHHHHHhhhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHhcCcchhccCCCcHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 12222333332222222222222 334 4566532111111110 0122355688999999999999999998888877
Q ss_pred HHHh
Q 023028 234 LLRK 237 (288)
Q Consensus 234 ~l~~ 237 (288)
++..
T Consensus 184 ~v~g 187 (280)
T COG3687 184 HVRG 187 (280)
T ss_pred Hhcc
Confidence 7663
No 79
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=35.85 E-value=95 Score=24.16 Aligned_cols=40 Identities=20% Similarity=0.014 Sum_probs=31.5
Q ss_pred HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 023028 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (288)
Q Consensus 200 ~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~ 239 (288)
.++..-.-|.+..++..++.+|..|..+...++..+...+
T Consensus 19 ~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 19 KLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3444445578999999999999999999998887766554
No 80
>PHA03154 hypothetical protein; Provisional
Probab=34.90 E-value=2.2e+02 Score=25.90 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHH---HHHHHHHHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHhhc
Q 023028 224 HCDFACLLYSLLRKRLHWQKVHH---MVHEAVEIET-QFVCEALPCALIGMNSSLMSQYIKFVADRL 286 (288)
Q Consensus 224 H~~f~~~l~~~l~~e~~~~~i~e---~~~eave~E~-~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~ 286 (288)
|+.|...++.....-...+.+.+ .+.+....|. .|..+.. +.-|-+.+.|..||+|.||.+
T Consensus 211 QvVfWTtvl~mYq~ciy~d~l~~sI~~~~~LLk~EvkaF~~W~~--sq~~y~~~~m~k~i~~~~~~~ 275 (304)
T PHA03154 211 QVVLWSTMFHFYSIAHCNDCINESIGFTEALLKQEVSAFYEWCL--EQEDYEADRMAKFIKFSADQI 275 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcCcccHHHHHHHHHHHHhhh
Confidence 34444444443333333444443 4445555554 5666654 445568999999999999975
No 81
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=34.53 E-value=35 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHH
Q 023028 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87 (288)
Q Consensus 48 ~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l 87 (288)
-+.|+....+|.+.. ...|..+|+++|..++..+
T Consensus 38 i~LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 38 ILLKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHH
Confidence 344666778899876 6778999999999999664
No 82
>PF13668 Ferritin_2: Ferritin-like domain
Probab=33.98 E-value=2.3e+02 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=27.4
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 136 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il 136 (288)
...+.+++|+.+..++..+..|+.|...+..++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788899999999999999999988877654
No 83
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=32.83 E-value=4.3e+02 Score=25.27 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=44.3
Q ss_pred ccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 67 QDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENL---AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (288)
Q Consensus 67 ~D~~~w~-~L~~~er~~~~~~l~~l~~~d~~v~~~l---~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~ 140 (288)
.++.+|- +-.+..+..+...+..+++++++.--.. ...|...=.-|-........+-+|++|..+...+++++.
T Consensus 220 ~~k~~~~~~~~~~~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~ 297 (410)
T PRK12759 220 TDKIDFMMDADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYC 297 (410)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 2333344445555566777787654222 112222222345556677788999999999999999885
No 84
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=28.33 E-value=4.2e+02 Score=23.44 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhhHHHHHccC--ChHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCH
Q 023028 90 FAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAME-N---------IHSEMYSLLLETYIKDSKEKHRLFNAIENIP 157 (288)
Q Consensus 90 l~~~d~~v~~~l~~~l~~~~--~~~E~~~~~~~Q~~~E-~---------iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p 157 (288)
-+.+.++|. .+++.=.|-+ .+|+++.+.+....-| + -|=+.|-.-...++.|+...+...+.+..-.
T Consensus 32 MSLlK~LQ~-~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~fl~~~~~g~ 110 (232)
T PF11251_consen 32 MSLLKALQR-DLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRFLSLLREGT 110 (232)
T ss_pred HHHHHHHHH-hCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC
Confidence 344555554 3333222333 4688888887665433 1 3888998888999888888777776655432
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHH--H-HhhhhHhHhHHHHHHHHHHcCCCccH--------------HHH-----HH
Q 023028 158 CVAQKAKWALDWIHSSDSFAERLVGF--A-CVEGIFFSGSFCAIFWLKKRGLMPGL--------------TFS-----NE 215 (288)
Q Consensus 158 ~l~~k~~~i~~~~~~~~~~~~~lv~~--~-~lEgi~f~~~F~~~~~l~~~~~m~g~--------------~~~-----i~ 215 (288)
.+..-+. ..+-+.+ ++..+.+ - +.+|= ...-+.-|.++|..+.|.+ +.. -+
T Consensus 111 ~v~~Al~----~~~~p~~-~~~Fv~~Tf~~i~~~~--~H~iAAaFtfGREdlIP~MF~~il~~~~~~~~~~~~f~yYL~R 183 (232)
T PF11251_consen 111 SVFEALQ----QADVPEP-AKRFVRFTFEIIAEGK--PHEIAAAFTFGREDLIPDMFRSILKDLNIPPGQLPTFRYYLER 183 (232)
T ss_pred CHHHHHH----hcCCCHH-HHHHHHHHHHHHhcCC--HHHHHHHHHhccccchHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 2221110 0010111 1111111 1 11110 0011122233333333332 111 26
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHH
Q 023028 216 LISRDEGLHCDFACLLYSLLRKRLH--WQKVHHMVHEAVEIETQF 258 (288)
Q Consensus 216 ~I~RDE~~H~~f~~~l~~~l~~e~~--~~~i~e~~~eave~E~~~ 258 (288)
.|--|.--|+-.+..++..|....+ .+++.....+|++.-+++
T Consensus 184 HIElDgdeHgPlA~~ml~~Lcg~D~~kw~ea~~aa~~AL~~Ri~L 228 (232)
T PF11251_consen 184 HIELDGDEHGPLAMQMLEELCGDDPQKWQEAEQAAKEALEARIAL 228 (232)
T ss_pred hhhcCCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999998886544 477888888888876654
No 85
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=27.38 E-value=3.2e+02 Score=21.75 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=68.1
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
.....|....++..++.+|..|++.+...+...++.|.- +.+...+. .+ .+ ....+-...-.
T Consensus 30 ~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~-----~~~~~~~~---------~~-~~---~~~~l~~al~~ 91 (156)
T cd01055 30 DSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVEL-----PAIEAPPS---------EF-ES---LLEVFEAALEH 91 (156)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeC-----CCCCCCCc---------cc-CC---HHHHHHHHHHH
Confidence 334678889999999999999999999999887654321 11110000 00 01 11111111223
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
|.- ....+.-+.-.+....-+.++..++++..||.-|......++..+.
T Consensus 92 E~~-~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~ 140 (156)
T cd01055 92 EQK-VTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLK 140 (156)
T ss_pred HHH-HHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2234444445566666799999999999999999877776665554
No 86
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=27.34 E-value=3.1e+02 Score=21.53 Aligned_cols=60 Identities=13% Similarity=-0.033 Sum_probs=46.6
Q ss_pred HHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--------------------HHHHHHHHHHHHHHHHHHHHH
Q 023028 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--------------------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 202 ~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--------------------~~~i~e~~~eave~E~~~~~~ 261 (288)
.+..-++++...++-+..+|..|..-.+.-+..+-..|+ ...+.++++.+++.|...+..
T Consensus 32 ~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~ 111 (148)
T cd01052 32 VKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKV 111 (148)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 334448899999999999999999998888877764443 123668899999998877764
No 87
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.29 E-value=75 Score=29.31 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q 023028 239 LHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADR 285 (288)
Q Consensus 239 ~~~~~i~e~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~ 285 (288)
.+++...+++....++......-.+ .+++|-+.+.+..||+|+++.
T Consensus 49 FDk~~Ae~Lin~q~elsd~tGnp~~-~qI~~~t~EA~~kYidfv~~i 94 (314)
T TIGR01114 49 FDKAAAETLIKTQEELSDATGNPYV-VQIFGETPEAIVRYIDWVADI 94 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeE-EEEecCCHHHHHHHHHHHhcc
Confidence 3567788888888887777665433 589999999999999999874
No 88
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=26.18 E-value=1.5e+02 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 201 l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
.+++--+|.++..++.|+.+|..|..-...++..
T Consensus 29 ~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~ 62 (166)
T COG1592 29 VAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGK 62 (166)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677789999999999999999999988877764
No 89
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=25.56 E-value=3.3e+02 Score=21.32 Aligned_cols=110 Identities=10% Similarity=-0.089 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--CHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 023028 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIEN--IPCVAQKAKWALDWIHSSDSFAERLVGFACVE 187 (288)
Q Consensus 110 ~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~--~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lE 187 (288)
.-+....++-.|+.+|..|++..+..+..+++.|.-....+..... .+.. . ....+.....+..+ -.|
T Consensus 36 ~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~l~~~~---~~e 105 (148)
T cd01052 36 EGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYL------P-PDPPDVKGILKVNL---KAE 105 (148)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCC------C-CCCccHHHHHHHHH---HHH
Confidence 3456888999999999999999999999998766542212211110 0000 0 00001111111111 111
Q ss_pred hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHH
Q 023028 188 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (288)
Q Consensus 188 gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l 231 (288)
...- ..+.-....+. +.=+++..+++.+..||..|......+
T Consensus 106 ~~~i-~~~~~~~~~a~-~~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 106 RCAI-KVYKELCDMTH-GKDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHH-HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 12222222333 356889999999999999999866543
No 90
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=25.41 E-value=1.2e+02 Score=24.16 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhCHHHHH
Q 023028 126 NIHSEMYSLLLET-----YIKDSKEKHRLFNAIENIPCVAQ 161 (288)
Q Consensus 126 ~iH~e~Ys~il~~-----~~~~~~e~~~~~~~~~~~p~l~~ 161 (288)
++|+++.-.-+.- |+.|..+|.++|+.+.+.|.+.+
T Consensus 86 AvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~E 126 (137)
T PF12165_consen 86 AVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFE 126 (137)
T ss_pred HHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHH
Confidence 6788876443332 23578999999999999998744
No 91
>PRK14047 putative methyltransferase; Provisional
Probab=23.59 E-value=93 Score=28.65 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q 023028 239 LHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADR 285 (288)
Q Consensus 239 ~~~~~i~e~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~ 285 (288)
.+++...+++....++......-.+ .+++|-+.+.+..||+|+++.
T Consensus 49 FDk~~Ae~Lin~q~elsd~TGnp~~-~~I~g~t~EA~~kYidfv~ei 94 (310)
T PRK14047 49 FDREAAEKLVNLQEEMSDETGNPCV-VHIFGTTPEAITNYIDFFSEV 94 (310)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeE-EEEecCCHHHHHHHHHHHhhc
Confidence 3567788888888887777665433 589999999999999999874
No 92
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=23.12 E-value=4e+02 Score=21.40 Aligned_cols=59 Identities=19% Similarity=0.052 Sum_probs=44.3
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
..--++|++......+.||.-|..-...-+..+-..|. ...+.++++.+++.|...+..
T Consensus 33 ~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~~~~~e~l~~~l~~E~~~~~~ 100 (157)
T TIGR00754 33 KNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIGETVREMLEADLALELDVLNR 100 (157)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44468999999999999999998876666555543332 244778899999998888764
No 93
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.97 E-value=1.3e+02 Score=24.92 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=32.0
Q ss_pred HHHHhhhhHhHhHHHHHH-HHHHcCCCccHHHHHHHHHhh
Q 023028 182 GFACVEGIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRD 220 (288)
Q Consensus 182 ~~~~lEgi~f~~~F~~~~-~l~~~~~m~g~~~~i~~I~RD 220 (288)
+..-+|+|-|-.|....- ...+++++.-.-++++.|+||
T Consensus 37 ~~~~LE~IGFqVG~~L~Erl~~e~~rf~deLeimKFiCkD 76 (163)
T KOG3316|consen 37 DLARLESIGFQVGRKLSERLTRERNRFKDELEIMKFICKD 76 (163)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 456789998888888774 455678899999999999998
No 94
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=22.96 E-value=2.1e+02 Score=27.49 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=47.8
Q ss_pred HhhhhHhHhHHHHHHHHHHcCCCcc-HHHHHHHHHhhhhhHHHHHHHHHHHHHhh-c--------h---HHHHH--HHHH
Q 023028 185 CVEGIFFSGSFCAIFWLKKRGLMPG-LTFSNELISRDEGLHCDFACLLYSLLRKR-L--------H---WQKVH--HMVH 249 (288)
Q Consensus 185 ~lEgi~f~~~F~~~~~l~~~~~m~g-~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-~--------~---~~~i~--e~~~ 249 (288)
-.|.+.-|+||+..--.-.-.++|| +...++.|.+.--+-...-..+ |..+ + . .+.+. ..+.
T Consensus 124 g~E~~RrygGFYGpTcVvDFAliPGSTsNVVN~IL~~~DIp~~hkqai---LaaKSWGMNTSYg~G~~Fa~~iE~g~t~~ 200 (499)
T PF09959_consen 124 GKESARRYGGFYGPTCVVDFALIPGSTSNVVNQILKKTDIPVDHKQAI---LAAKSWGMNTSYGIGDVFAHAIEEGKTLA 200 (499)
T ss_pred hHHHHHHhcCccCCceeeeeeecCCchHHHHHHHHHhCCCcHHHHHHH---HHhcccCCccccccHHHHHHHHHcCCCHH
Confidence 4699999999987743334467897 5667788887665555444433 2221 1 0 12333 2577
Q ss_pred HHHHHHHHHHHHhc
Q 023028 250 EAVEIETQFVCEAL 263 (288)
Q Consensus 250 eave~E~~~~~~~~ 263 (288)
+|++.|++-++.++
T Consensus 201 eA~~~Ei~~~q~iy 214 (499)
T PF09959_consen 201 EAVKKEIKMMQFIY 214 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877655
No 95
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=21.28 E-value=5.1e+02 Score=23.95 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=39.3
Q ss_pred hHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 174 DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 174 ~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
..+.+.++++ +.++++.--.+-..+ ...-.-|..........--|++|....++++..+..
T Consensus 58 k~~~~~~L~fl~~~D~~~~~n~~~~~---~~~~~~pe~~~~~~~q~~~E~IHsesYs~il~tl~~ 119 (324)
T PRK13966 58 KQLTMRVFTGLTMLDTIQGTVGAVSL---IPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS 119 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666 567776543221111 111112666777788888999999999999998864
No 96
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=20.74 E-value=79 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 023028 70 QHWERLLDSEKHFISHV 86 (288)
Q Consensus 70 ~~w~~L~~~er~~~~~~ 86 (288)
..|.+||+.||..|..-
T Consensus 41 ~~Wk~Ls~~EK~~Y~~~ 57 (73)
T PF09011_consen 41 ERWKSLSEEEKEPYEER 57 (73)
T ss_dssp HHHHHS-HHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 57999999999987754
No 97
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=20.28 E-value=1.3e+02 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=22.8
Q ss_pred cccCccccHHHHhcCCHHHHHHHHHHHHH
Q 023028 61 EEVDLSQDVQHWERLLDSEKHFISHVLAF 89 (288)
Q Consensus 61 ~eid~s~D~~~w~~L~~~er~~~~~~l~~ 89 (288)
.+-|+++=..-|+.|++.+|.-+..+++.
T Consensus 6 ~~ddf~Qa~~ly~~l~~~er~~lv~nia~ 34 (68)
T PF06628_consen 6 KDDDFSQARDLYRVLSDEERERLVENIAG 34 (68)
T ss_dssp GGCSSHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHCCHHHHHHHHHHHHH
Confidence 34677788888999999999977766654
No 98
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=20.01 E-value=4.3e+02 Score=23.82 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 111 IPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (288)
Q Consensus 111 ~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~ 140 (288)
.|=++........+|+.|..+...+++.+.
T Consensus 199 qP~~r~v~~iH~~DEaRHi~f~~~~l~~~~ 228 (304)
T PF11583_consen 199 QPLVRQVMRIHVRDEARHIAFAREELRRVW 228 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888887777664
No 99
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=20.00 E-value=1e+02 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=18.5
Q ss_pred ccHHHHhcCCHHHHHHHHHHHHHH
Q 023028 67 QDVQHWERLLDSEKHFISHVLAFF 90 (288)
Q Consensus 67 ~D~~~w~~L~~~er~~~~~~l~~l 90 (288)
+.+-.|.++|+.||..+...+-..
T Consensus 30 ~Ei~~W~~msd~Er~aVl~~l~qr 53 (74)
T COG3313 30 DEIFNWSSMSDDERRAVLRLLPQR 53 (74)
T ss_pred HHHHHHhhCCHHHHHHHHHHhHHH
Confidence 446689999999999887765433
Done!