Query 023028
Match_columns 288
No_of_seqs 116 out of 1066
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olj_A Ribonucleoside-diphosph 100.0 5.9E-75 2E-79 525.7 29.0 266 23-288 3-269 (286)
2 2o1z_A Ribonucleotide reductas 100.0 5.8E-73 2E-77 517.7 26.8 268 20-287 24-291 (311)
3 2p1i_A Ribonucleotide reductas 100.0 3.8E-72 1.3E-76 519.8 22.9 264 24-287 29-292 (349)
4 1jk0_B RNR Y4, ribonucleoside- 100.0 3.7E-73 1.3E-77 525.8 15.8 271 16-287 15-286 (345)
5 1h0o_A Ribonucleoside-diphosph 100.0 6.5E-71 2.2E-75 516.7 30.4 267 21-287 66-333 (390)
6 1jk0_A RNR Y2, ribonucleoside- 100.0 5.2E-71 1.8E-75 520.2 25.1 272 16-287 86-359 (419)
7 4a58_A Ribonucleoside-diphosph 100.0 3.4E-70 1.2E-74 501.7 25.8 266 20-288 10-279 (324)
8 1syy_A Ribonucleoside-diphosph 100.0 2.9E-68 9.9E-73 494.1 31.2 263 22-287 14-300 (346)
9 2rcc_A Ribonucleoside-diphosph 100.0 1.6E-67 5.4E-72 489.4 29.8 262 24-287 18-293 (346)
10 1mxr_A Ribonucleotide reductas 100.0 5.7E-67 1.9E-71 490.1 31.8 263 22-287 11-316 (375)
11 3mjo_A Ribonucleotide reductas 100.0 8.5E-66 2.9E-70 467.6 31.0 250 34-288 16-272 (296)
12 3n37_A Ribonucleoside-diphosph 100.0 1.6E-64 5.5E-69 463.9 32.1 251 33-288 6-263 (319)
13 4dr0_A Ribonucleoside-diphosph 100.0 1.7E-64 5.7E-69 468.1 29.7 253 32-288 25-290 (350)
14 3dhz_A Ribonucleotide reductas 100.0 4E-64 1.4E-68 462.8 31.2 250 34-288 17-273 (329)
15 3ee4_A Probable ribonucleoside 100.0 6.6E-60 2.2E-64 433.3 23.3 253 23-287 12-283 (323)
16 2inc_A Toluene, O-xylene monoo 98.1 8.5E-05 2.9E-09 71.1 16.7 165 71-238 80-247 (491)
17 1mty_D Methane monooxygenase h 98.0 0.00092 3.1E-08 64.1 20.6 166 71-238 77-246 (512)
18 2uw1_A Desaturase, plastid del 97.8 0.0038 1.3E-07 56.5 21.1 165 56-241 35-224 (338)
19 2inc_B Toluene, O-xylene monoo 97.7 0.0055 1.9E-07 55.5 19.8 180 72-253 103-287 (322)
20 3ge3_A Toluene-4-monooxygenase 97.7 0.0018 6.1E-08 61.9 17.1 178 71-254 81-264 (500)
21 3ge3_B Toluene-4-monooxygenase 97.5 0.0067 2.3E-07 55.1 17.2 166 72-239 107-276 (327)
22 1za0_A Possible acyl-[acyl-car 97.3 0.0049 1.7E-07 54.5 13.7 173 50-244 25-212 (275)
23 3pvt_A Phenylacetic acid degra 97.0 0.045 1.5E-06 49.2 17.6 171 75-263 25-197 (311)
24 1mhy_B Methane monooxygenase h 96.9 0.047 1.6E-06 50.7 17.1 164 71-236 135-306 (395)
25 3u52_A Phenol hydroxylase comp 96.9 0.036 1.2E-06 53.2 16.6 156 72-238 86-250 (511)
26 3u52_C Phenol hydroxylase comp 96.8 0.057 1.9E-06 49.0 16.7 162 72-238 108-274 (333)
27 3chh_A P-aminobenzoate N-oxyge 96.6 0.26 8.9E-06 44.7 19.0 173 55-241 57-247 (336)
28 1mty_B Methane monooxygenase h 96.5 0.081 2.8E-06 48.9 15.4 164 71-236 127-298 (384)
29 3pf7_A Benzoyl-COA oxygenase c 96.2 0.028 9.6E-07 52.3 10.2 185 71-264 97-300 (481)
30 2oc5_A Hypothetical protein; D 95.1 1.2 4E-05 37.0 18.8 180 76-274 28-211 (244)
31 1zpy_A Hypothetical protein NE 93.7 1.2 4.2E-05 32.6 10.8 69 73-146 11-79 (95)
32 1rcw_A CT610, CADD; iron, DI-i 92.9 3.6 0.00012 34.3 21.6 200 48-263 11-219 (231)
33 3bjd_A Putative 3-oxoacyl-(acy 91.0 7.3 0.00025 34.9 14.9 152 104-263 162-323 (332)
34 3k6c_A Uncharacterized protein 85.8 8.4 0.00029 28.1 10.8 68 73-145 11-78 (95)
35 3qhb_A Symerythrin, ORF180; fo 83.8 16 0.00056 29.7 13.0 122 104-236 49-176 (179)
36 1za0_A Possible acyl-[acyl-car 82.5 9.4 0.00032 33.4 10.1 42 104-145 168-210 (275)
37 3dde_A TENA/THI-4 protein, dom 80.6 24 0.00083 29.5 17.1 149 106-261 63-216 (239)
38 4di0_A Rubrerythrin; ssgcid, s 69.5 37 0.0013 26.3 12.4 105 104-233 36-140 (144)
39 1yuz_A Nigerythrin; rubrythrin 68.1 49 0.0017 27.2 12.1 113 105-237 53-165 (202)
40 2uw1_A Desaturase, plastid del 67.7 25 0.00084 31.6 8.9 42 104-145 183-225 (338)
41 3b5o_A CADD-like protein of un 67.7 58 0.002 27.8 14.7 140 112-261 72-224 (244)
42 2a2m_A Hypothetical protein BT 64.2 67 0.0023 27.3 15.3 142 106-264 106-250 (258)
43 3pwf_A Rubrerythrin; non heme 62.4 58 0.002 26.0 13.9 101 103-237 29-129 (170)
44 3uno_A Probable bacterioferrit 58.3 61 0.0021 26.3 9.1 61 199-260 34-104 (189)
45 2qcx_A Transcriptional activat 57.8 88 0.003 26.6 21.4 149 105-263 85-240 (263)
46 1j30_A 144AA long hypothetical 57.7 61 0.0021 24.7 14.3 107 105-236 33-141 (144)
47 1nfv_A Bacterioferritin; 24 su 55.1 74 0.0025 24.9 12.9 107 110-236 41-147 (179)
48 2hz8_A De novo designed DIIRON 54.5 25 0.00086 26.5 5.5 49 208-260 61-109 (115)
49 3k6c_A Uncharacterized protein 54.2 59 0.002 23.5 7.3 54 175-234 19-73 (95)
50 3oql_A TENA homolog; transcrip 54.1 1.1E+02 0.0036 26.4 14.9 142 112-263 89-245 (262)
51 1o9i_A Pseudocatalase; oxidore 53.5 76 0.0026 27.4 9.2 69 54-139 122-192 (266)
52 3oj5_A Ferritin family protein 53.4 81 0.0028 25.2 9.1 60 201-261 36-105 (189)
53 1otk_A Protein PAAC, phenylace 52.8 1.1E+02 0.0037 26.1 15.2 151 85-254 7-162 (249)
54 3uoi_A Bacterioferritin, BFR; 51.7 78 0.0027 24.2 11.8 110 107-236 35-144 (161)
55 3qb9_A Bacterioferritin, BFR; 51.3 84 0.0029 24.4 11.8 108 109-236 37-144 (174)
56 2v8t_A Manganese-containing ps 50.5 92 0.0032 27.4 9.3 69 54-139 129-199 (302)
57 1o9i_A Pseudocatalase; oxidore 48.5 1.3E+02 0.0043 26.0 9.8 121 109-237 49-194 (266)
58 3uoi_A Bacterioferritin, BFR; 48.2 51 0.0018 25.3 6.9 59 203-261 35-102 (161)
59 1zpy_A Hypothetical protein NE 48.0 76 0.0026 23.0 7.3 54 175-234 19-73 (95)
60 2fzf_A Hypothetical protein; s 47.6 99 0.0034 24.2 14.1 134 86-237 24-163 (175)
61 2fzf_A Hypothetical protein; s 46.1 1E+02 0.0036 24.0 8.5 55 84-139 107-161 (175)
62 2qzc_A Transcriptional activat 45.3 1.2E+02 0.0042 24.6 16.3 138 106-264 63-208 (214)
63 1yuz_A Nigerythrin; rubrythrin 44.1 1.3E+02 0.0045 24.6 9.0 61 200-260 52-121 (202)
64 3gvy_A Bacterioferritin; iron 43.7 80 0.0027 24.1 7.3 60 202-261 32-100 (161)
65 1lko_A Rubrerythrin all-iron(I 43.7 1.3E+02 0.0044 24.3 11.2 113 104-237 32-144 (191)
66 3e6s_A Ferritin; iron storage, 42.2 1.2E+02 0.0043 23.8 9.2 62 199-261 28-101 (168)
67 3hl1_A Ferritin like protein; 42.2 55 0.0019 29.1 6.5 39 198-238 33-71 (317)
68 4am5_A Bacterioferritin; metal 41.0 1.2E+02 0.0041 23.3 9.1 58 204-261 34-100 (159)
69 2y3q_A Bacterioferritin; metal 41.0 79 0.0027 23.9 6.9 59 203-261 33-100 (158)
70 2qqy_A Sigma B operon; dodecam 39.9 1.1E+02 0.0039 22.6 10.8 101 111-232 41-141 (149)
71 1nfv_A Bacterioferritin; 24 su 39.6 69 0.0024 25.1 6.5 59 203-261 38-105 (179)
72 2gm8_A TENA homolog/THI-4 thia 37.1 1.7E+02 0.0058 23.9 18.6 144 105-263 66-218 (221)
73 1jgc_A Bacterioferritin, BFR; 36.7 1E+02 0.0034 23.4 6.9 58 203-260 33-99 (161)
74 4am5_A Bacterioferritin; metal 36.7 1.4E+02 0.0049 22.8 12.8 110 107-236 33-142 (159)
75 3qb9_A Bacterioferritin, BFR; 36.0 1E+02 0.0034 23.9 6.9 58 203-260 35-101 (174)
76 1eum_A Ferritin 1; ECFTNA, met 35.8 91 0.0031 24.3 6.5 72 191-262 18-101 (165)
77 3gvy_A Bacterioferritin; iron 35.0 1.5E+02 0.005 22.5 10.2 109 108-236 34-142 (161)
78 2o1z_A Ribonucleotide reductas 33.8 83 0.0028 27.7 6.5 60 174-236 84-144 (311)
79 3olj_A Ribonucleoside-diphosph 33.7 89 0.003 27.1 6.6 60 175-237 61-121 (286)
80 4dr0_A Ribonucleoside-diphosph 33.7 96 0.0033 27.8 7.0 61 174-237 73-135 (350)
81 1vlg_A Ferritin; TM1128, struc 33.0 1.8E+02 0.006 22.8 9.1 59 201-260 45-113 (176)
82 3mjo_A Ribonucleotide reductas 32.9 98 0.0034 26.9 6.8 77 157-238 46-124 (296)
83 1s3q_A Ferritin; ferroxidase, 31.2 1.9E+02 0.0065 22.7 9.3 61 200-261 32-102 (173)
84 3fvb_A Bacterioferritin; niaid 30.7 2E+02 0.0067 22.6 9.1 89 173-262 25-122 (182)
85 2y3q_A Bacterioferritin; metal 30.3 1.7E+02 0.0059 21.9 13.7 108 109-236 35-142 (158)
86 2qqy_A Sigma B operon; dodecam 28.9 1.1E+02 0.0038 22.7 5.8 59 203-261 37-103 (149)
87 3n37_A Ribonucleoside-diphosph 26.6 1E+02 0.0034 27.2 5.7 61 175-238 54-115 (319)
88 3dhz_A Ribonucleotide reductas 25.7 1.1E+02 0.0036 27.2 5.7 61 175-238 64-125 (329)
89 1udd_A Transcriptional regulat 25.3 2.7E+02 0.0094 22.6 17.0 139 111-263 65-212 (226)
90 1syy_A Ribonucleoside-diphosph 21.8 1.4E+02 0.005 26.4 5.9 60 175-237 76-136 (346)
91 2v2p_A Ferritin light chain; m 21.8 2.6E+02 0.009 21.8 7.0 56 206-261 43-109 (174)
92 2rcc_A Ribonucleoside-diphosph 20.4 1.9E+02 0.0064 25.6 6.3 59 175-237 76-135 (346)
93 1vjx_A Putative ferritin-like 20.3 2.9E+02 0.0099 21.0 8.4 35 104-138 121-155 (157)
94 2e0z_A Virus-like particle; ba 20.1 22 0.00075 32.1 0.0 56 104-161 40-95 (345)
No 1
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=5.9e-75 Score=525.68 Aligned_cols=266 Identities=67% Similarity=1.150 Sum_probs=258.6
Q ss_pred cccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023028 23 EDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (288)
Q Consensus 23 ~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~ 102 (288)
+++||||.+|++|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.
T Consensus 3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~ 82 (286)
T 3olj_A 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLV 82 (286)
T ss_dssp STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-chHHHHHHH
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLV 181 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv 181 (288)
+.+.+.++.||+++|+++|+++|+||+++||+++++++.||++++++|+++.++|.+++|++|+.+++++ +++++++++
T Consensus 83 ~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~~lv 162 (286)
T 3olj_A 83 ERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 162 (286)
T ss_dssp HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 8999999999999999999999999999999999999989999999999999999999999999999975 456899999
Q ss_pred HHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 023028 182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 182 ~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~ 261 (288)
+++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++++||++|++|+.+
T Consensus 163 a~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eave~E~~~~~~ 242 (286)
T 3olj_A 163 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE 242 (286)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 262 ALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 262 ~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
++|++++||+.+.+++||+|+||+||.
T Consensus 243 ~l~~~~~Gl~~~~~~~yi~y~An~~L~ 269 (286)
T 3olj_A 243 ALPVKLIGMNCTLMKQYIEFVADRLML 269 (286)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999973
No 2
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=5.8e-73 Score=517.73 Aligned_cols=268 Identities=66% Similarity=1.131 Sum_probs=253.1
Q ss_pred ccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 023028 20 QEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE 99 (288)
Q Consensus 20 ~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~ 99 (288)
.+.+++||||+||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||+++++++++|+.+|++|++
T Consensus 24 ~~~~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~ 103 (311)
T 2o1z_A 24 KSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLE 103 (311)
T ss_dssp HTTGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHC------
T ss_pred hhhhhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHH
Q 023028 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAER 179 (288)
Q Consensus 100 ~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 179 (288)
++++.+++.++.||+++|+++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.++++++++++++
T Consensus 104 ~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~ 183 (311)
T 2o1z_A 104 NLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAER 183 (311)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSSTTSCHHHH
T ss_pred hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCccHHHHH
Confidence 99888999999999999999999999999999999999998899999999999999999999999999999876679999
Q ss_pred HHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 023028 180 LVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFV 259 (288)
Q Consensus 180 lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~ 259 (288)
+++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++.+||++|++|+
T Consensus 184 lva~~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~eave~E~~~~ 263 (311)
T 2o1z_A 184 IVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFI 263 (311)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 260 CEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 260 ~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
++++|.+++||+.+.+++||+|+||++|
T Consensus 264 ~~~~~~~~~Gl~~~~~~~yi~y~an~~L 291 (311)
T 2o1z_A 264 CESLPCDLIGMNSRLMSQYIEFVADRLL 291 (311)
T ss_dssp TTTBCCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997
No 3
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=3.8e-72 Score=519.75 Aligned_cols=264 Identities=66% Similarity=1.120 Sum_probs=236.1
Q ss_pred ccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023028 24 DQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAA 103 (288)
Q Consensus 24 ~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~ 103 (288)
.++|||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++++
T Consensus 29 ~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~~ 108 (349)
T 2p1i_A 29 SNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLAS 108 (349)
T ss_dssp ------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCHH
T ss_pred ccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
.+++.++.||+++|+++|+++|+||+++||+|+++++.||.+++++|+++.++|.+++|++|+.++++++++++++++++
T Consensus 109 ~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva~ 188 (349)
T 2p1i_A 109 KFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVAN 188 (349)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999998777899999999
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|++|+.+++
T Consensus 189 ~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~l 268 (349)
T 2p1i_A 189 ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESL 268 (349)
T ss_dssp HHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 264 PCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 264 ~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
|.+++||+.+++++||+|+||+||
T Consensus 269 ~~~~~Gl~~~~~~~Yi~y~an~~L 292 (349)
T 2p1i_A 269 PCDLIGMNSRLMSQYIEFVADRLL 292 (349)
T ss_dssp CSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997
No 4
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=3.7e-73 Score=525.84 Aligned_cols=271 Identities=43% Similarity=0.821 Sum_probs=243.0
Q ss_pred hhccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 023028 16 EQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDG 95 (288)
Q Consensus 16 ~~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~ 95 (288)
+.++.+.+.++|||+||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|+
T Consensus 15 ~~~~~~~~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~ 94 (345)
T 1jk0_B 15 RHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDN 94 (345)
T ss_dssp HHHHHHHTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC----
T ss_pred hHhhhhhhhcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-ch
Q 023028 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SD 174 (288)
Q Consensus 96 ~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~~ 174 (288)
+|++++++.+++.++.||+++|+++|+++|+||+++||+|+++++.||.++ ++|+++.++|.+++|++|+.+++++ +.
T Consensus 95 iv~~nl~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~-~~f~~~~~~p~l~~K~~~i~~~~~~~~~ 173 (345)
T 1jk0_B 95 LVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI-PLFKEIANLPEVKHKAAFIERWISNDDS 173 (345)
T ss_dssp -----CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS-CSGGGGCSCHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHhhCHHHHHHHHHHHHHHhCCcH
Confidence 999999989999999999999999999999999999999999998888888 8999999999999999999999974 55
Q ss_pred HHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 023028 175 SFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEI 254 (288)
Q Consensus 175 ~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~ 254 (288)
++++++++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++.+||++
T Consensus 174 ~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~v~~l~~eave~ 253 (345)
T 1jk0_B 174 LYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEI 253 (345)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 255 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
|++|+++++|++++||+.+++++||+|+||+||
T Consensus 254 E~~~~~~~l~~~~~Gl~~~~~~~Yi~y~an~~L 286 (345)
T 1jk0_B 254 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLL 286 (345)
T ss_dssp HHHHHTTSCC-----------CTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999988999999999999999999999997
No 5
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=6.5e-71 Score=516.65 Aligned_cols=267 Identities=67% Similarity=1.160 Sum_probs=258.8
Q ss_pred cccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023028 21 EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (288)
Q Consensus 21 ~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~ 100 (288)
..+.++|||+||+.||+++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|+++
T Consensus 66 ~~~~~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~vla~fa~~Dsiv~~n 145 (390)
T 1h0o_A 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNEN 145 (390)
T ss_dssp CSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-chHHHHH
Q 023028 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAER 179 (288)
Q Consensus 101 l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~ 179 (288)
+++.|.+.++.||+++|+++|+++|+||+++||+|+++++.||.+++++|+++.++|.+++|++|+.+++++ +.+++++
T Consensus 146 l~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~~~~~~~~ 225 (390)
T 1h0o_A 146 LVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGER 225 (390)
T ss_dssp HHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccchhHHHH
Confidence 998999999999999999999999999999999999999989999999999999999999999999999975 4578999
Q ss_pred HHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 023028 180 LVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFV 259 (288)
Q Consensus 180 lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~ 259 (288)
+++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|++|+
T Consensus 226 lva~~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~~~v~el~~eave~E~~~~ 305 (390)
T 1h0o_A 226 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 260 CEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 260 ~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
.+++|.+++||+.+++++||+|+||++|
T Consensus 306 ~~~~~~~~iGl~~~~~~~YI~y~Anr~L 333 (390)
T 1h0o_A 306 TEALPVKLIGMNCTLMKQYIEFVADRLM 333 (390)
T ss_dssp HTTSCGGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997
No 6
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=5.2e-71 Score=520.24 Aligned_cols=272 Identities=61% Similarity=1.073 Sum_probs=263.2
Q ss_pred hhccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHh-cCCHHHHHHHHHHHHHHHHHH
Q 023028 16 EQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASD 94 (288)
Q Consensus 16 ~~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~-~L~~~er~~~~~~l~~l~~~d 94 (288)
+.++.+.+.++|||++|+.||+++|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+.+|
T Consensus 86 ~~~~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~~dw~~~Lt~~Er~~~~~vLa~fa~~D 165 (419)
T 1jk0_A 86 RHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASD 165 (419)
T ss_dssp HHHHHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhhhhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-c
Q 023028 95 GIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-S 173 (288)
Q Consensus 95 ~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~ 173 (288)
++|++++++.|.+.++.||+++|+++|+++|+||+++||+|+++++.||.+++++|+++.++|.|++|++|+.+++++ +
T Consensus 166 siv~~nl~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~~~ 245 (419)
T 1jk0_A 166 GIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD 245 (419)
T ss_dssp SHHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhccc
Confidence 999999988899999999999999999999999999999999999989999999999999999999999999999975 4
Q ss_pred hHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 023028 174 DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVE 253 (288)
Q Consensus 174 ~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave 253 (288)
.++++++++++++||++|||+|+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||+
T Consensus 246 ~~~~~~lva~~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~e~v~el~~eave 325 (419)
T 1jk0_A 246 ALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVE 325 (419)
T ss_dssp CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 254 IETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 254 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
+|++|+.+++|++++||+.+++++||+|+||++|
T Consensus 326 ~E~~~~~~~lp~~liGln~~~~~~YI~Y~Anr~L 359 (419)
T 1jk0_A 326 IEQRYFLDALPVALLGMNADLMNQYVEFVADRLL 359 (419)
T ss_dssp HHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997
No 7
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=3.4e-70 Score=501.72 Aligned_cols=266 Identities=26% Similarity=0.395 Sum_probs=241.5
Q ss_pred ccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 023028 20 QEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE 99 (288)
Q Consensus 20 ~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~ 99 (288)
++...-+|+||+|+.|+. +|++||++|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++
T Consensus 10 ~~~~~~~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~~~~~~D~iv~~ 88 (324)
T 4a58_A 10 LESTSLYKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNF 88 (324)
T ss_dssp ---------------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhHHHHHhCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 455667899999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHH
Q 023028 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAE 178 (288)
Q Consensus 100 ~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~ 178 (288)
++. .+++.++.||+++|+++|+++|+||+++||+|+++++. ||.+++++|+++.++|.+++|++|+.+++++.+++++
T Consensus 89 nl~-~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~ 167 (324)
T 4a58_A 89 NID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPE 167 (324)
T ss_dssp HHH-HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHCSSHHH
T ss_pred hHH-HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCchhHHH
Confidence 987 69999999999999999999999999999999999974 7899999999999999999999999999987778999
Q ss_pred HHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHH
Q 023028 179 RLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK---RLHWQKVHHMVHEAVEIE 255 (288)
Q Consensus 179 ~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~---e~~~~~i~e~~~eave~E 255 (288)
++++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+.+ ++..++|++++++||++|
T Consensus 168 ~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~p~~~~v~~i~~eave~E 247 (324)
T 4a58_A 168 KILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVE 247 (324)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998874 677899999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 256 TQFVCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
++|++++++ ++.|||.+.+++||+|+||+||.
T Consensus 248 ~~~~~~~~~-~~~~ln~~~~~~Yi~y~An~~L~ 279 (324)
T 4a58_A 248 TAFIEARGE-GVTLVDVRAIKQFLEATADRILG 279 (324)
T ss_dssp HHHHHHHST-TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cccCCCHHHHHHHHHHHHHHHHH
Confidence 999999997 67899999999999999999973
No 8
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=2.9e-68 Score=494.14 Aligned_cols=263 Identities=27% Similarity=0.513 Sum_probs=250.2
Q ss_pred cccccccccc-CCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Q 023028 22 QEDQEPILME-QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE--RLLDSEKHFISHVLAFFAASDGIVL 98 (288)
Q Consensus 22 ~~~~~~il~~-~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~--~L~~~er~~~~~~l~~l~~~d~~v~ 98 (288)
..++++||+| ++++++++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|+.+|++|+
T Consensus 14 ~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~~Er~~~~~~l~~~~~~D~iv~ 93 (346)
T 1syy_A 14 NLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVG 93 (346)
T ss_dssp CGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999 778899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc------
Q 023028 99 ENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------ 172 (288)
Q Consensus 99 ~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~------ 172 (288)
+++++.+++.++.||+++|+++|+++|+||+++||+++++++.++++ +|+++.++|.+++|++|+.++|++
T Consensus 94 ~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~e---~f~~~~~~p~l~~k~~~i~~~y~~~~~~~~ 170 (346)
T 1syy_A 94 NNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 (346)
T ss_dssp HHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH---HTTHHHHCHHHHHHHHHHHHTTSGGGSTTC
T ss_pred HhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHhhCHHHHHHHHHHHHHHHHhhhhcc
Confidence 99998999999999999999999999999999999999999988876 999999999999999999999864
Q ss_pred -------chHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-ch---
Q 023028 173 -------SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-LH--- 240 (288)
Q Consensus 173 -------~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-~~--- 240 (288)
+++++++++++ +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++ |+
T Consensus 171 ~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~~~~ 250 (346)
T 1syy_A 171 RTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT 250 (346)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh
Confidence 35799999999 5999999999999999999999999999999999999999999999999988865 44
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 241 ---WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 241 ---~~~i~e~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
+++|++++.+||++|++|++++++.+++||+.+++++||+|+||+||
T Consensus 251 ~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL 300 (346)
T 1syy_A 251 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRL 300 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999888999999999999999999997
No 9
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.6e-67 Score=489.35 Aligned_cols=262 Identities=19% Similarity=0.318 Sum_probs=250.0
Q ss_pred ccccccccCCCc-ceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023028 24 DQEPILMEQNQR-FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (288)
Q Consensus 24 ~~~~il~~~~~~-~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~ 102 (288)
.+++||+||+.+ .+++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++
T Consensus 18 ~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~l- 96 (346)
T 2rcc_A 18 ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYS- 96 (346)
T ss_dssp SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGGSCHHHHHHHHHHHHHHHHTTTTCCCHH-
T ss_pred ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 689999999986 479999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc------chHH
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------SDSF 176 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~------~~~~ 176 (288)
+.+++.++.||+++|+++|+++|+||+++||+|++++ .+|.+++++|+++.++|.+++|++|+.++|++ +.++
T Consensus 97 ~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl-~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 175 (346)
T 2rcc_A 97 MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSL-VPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTF 175 (346)
T ss_dssp HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCCChHHH
Confidence 7899999999999999999999999999999999999 58889999999999999999999999999862 4579
Q ss_pred HHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHHHHH
Q 023028 177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVH 249 (288)
Q Consensus 177 ~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~e~~~ 249 (288)
++++++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++++.| +++|++++.
T Consensus 176 ~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~e~~~~v~~l~~ 255 (346)
T 2rcc_A 176 LESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLM 255 (346)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCChhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887543 468999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcC
Q 023028 250 EAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 250 eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
+||++|++|+++++|.+++||+.+++++||+|+||+||
T Consensus 256 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L 293 (346)
T 2rcc_A 256 KAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRA 293 (346)
T ss_dssp HHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999997
No 10
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=5.7e-67 Score=490.07 Aligned_cols=263 Identities=24% Similarity=0.345 Sum_probs=246.3
Q ss_pred ccccccccccCCCcc-eecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023028 22 QEDQEPILMEQNQRF-CMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (288)
Q Consensus 22 ~~~~~~il~~~~~~~-~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~ 100 (288)
+..++|||+||+.++ .+.|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|+++
T Consensus 11 ~~~~~~~~~g~~~n~~r~~~~~y~~~~~lykk~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~Dsiv~~~ 90 (375)
T 1mxr_A 11 DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 90 (375)
T ss_dssp CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCChhhcCCcccHHHHHHHHHHHhcCCCchhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446799999998553 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc--------
Q 023028 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-------- 172 (288)
Q Consensus 101 l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-------- 172 (288)
+++.+++.++.||+++|+++|+++|+||+++||+|+++++.+|++ +|+++.++|.+++|++|+.++|++
T Consensus 91 ~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~e---~f~~i~~~p~i~~Ka~~i~~~y~~~~~~~~~~ 167 (375)
T 1mxr_A 91 PNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSV---VFDDIVTNEQIQKRAEGISSYYDELIEMTSYW 167 (375)
T ss_dssp HHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 998899999999999999999999999999999999999988886 999999999999999999999864
Q ss_pred ----------------------chHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHH
Q 023028 173 ----------------------SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (288)
Q Consensus 173 ----------------------~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~ 230 (288)
++++++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~lH~~~~~~ 247 (375)
T 1mxr_A 168 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 247 (375)
T ss_dssp HHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2368899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--hc---------hHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHHhhcC
Q 023028 231 LYSLLRK--RL---------HWQKVHHMVHEAVEIETQFVCEALP-CALIGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 231 l~~~l~~--e~---------~~~~i~e~~~eave~E~~~~~~~~~-~~~~Gl~~~~~~~yi~y~ad~~L 287 (288)
+++.+++ +. .+++|++++.+||++|++|++++++ ++++||+.+.+++||+|+||+||
T Consensus 248 l~~~l~~~~e~p~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL 316 (375)
T 1mxr_A 248 MLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRM 316 (375)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999887 22 2578999999999999999999986 47899999999999999999997
No 11
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=8.5e-66 Score=467.64 Aligned_cols=250 Identities=20% Similarity=0.295 Sum_probs=236.1
Q ss_pred CcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHH
Q 023028 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (288)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E 113 (288)
.+.++.|++||+.|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.||
T Consensus 16 ~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw~~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pe 95 (296)
T 3mjo_A 16 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 95 (296)
T ss_dssp CCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHH
T ss_pred ccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHh
Q 023028 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (288)
Q Consensus 114 ~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~ 193 (288)
+++|+++|+++|+||+++||+++++++.+ .+++++|+++.++|.+++|++|+.++++++. +++++++++++||++|||
T Consensus 96 ~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEGi~Fys 173 (296)
T 3mjo_A 96 EEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGDD-PLKKKVASTLLESFLFYS 173 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 4678899999999999999999999998754 578999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHHhcCCC
Q 023028 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (288)
Q Consensus 194 ~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~e~~~eave~E~~~~~~~~~~~ 266 (288)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++ +++++++++||++|++|+++++ +
T Consensus 174 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v~~l~~eave~E~~~~~~~~--~ 251 (296)
T 3mjo_A 174 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 251 (296)
T ss_dssp HTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999999988764 3488999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC
Q 023028 267 LIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 267 ~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.+||+.+ +++||+|+|||||.
T Consensus 252 ~iGl~~~-~~~yi~y~An~~L~ 272 (296)
T 3mjo_A 252 DLGWTED-VKRFLRYNANKALN 272 (296)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHH
T ss_pred ccCcHHH-HHHHHHHHHHHHHH
Confidence 7899876 99999999999973
No 12
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=1.6e-64 Score=463.90 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=236.7
Q ss_pred CCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChH
Q 023028 33 NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIP 112 (288)
Q Consensus 33 ~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~ 112 (288)
....++.|++||++|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.|
T Consensus 6 ~~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~p 85 (319)
T 3n37_A 6 ISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTP 85 (319)
T ss_dssp CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSH
T ss_pred cccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhH
Q 023028 113 EARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFS 192 (288)
Q Consensus 113 E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~ 192 (288)
|+++|+++|+++|+||+++||+++++++. +.+++++|+++.++|.+++|++|+.++++++. +++++|+++++||++||
T Consensus 86 e~~~~~~~q~~~E~iHs~sYs~il~tl~~-~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEgi~Fy 163 (319)
T 3n37_A 86 HEEAVLSNISFMEAVHARSYSSIFSTLCQ-TKDVDAAYAWSEENAPLQRKAQIIQQHYRGDD-PLKKKIASVFLESFLFY 163 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHhhCHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986 45678899999999999999999999998764 67899999999999999
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHHhcCC
Q 023028 193 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPC 265 (288)
Q Consensus 193 ~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~e~~~eave~E~~~~~~~~~~ 265 (288)
|||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++ +++++++++||++|++|+++++
T Consensus 164 s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i~~l~~eave~E~~~~~~~~-- 241 (319)
T 3n37_A 164 SGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELY-- 241 (319)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999988764 3489999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCC
Q 023028 266 ALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
+.+||+.+ +++||+|+||+||.
T Consensus 242 ~~iGl~~~-~~~yi~y~An~~L~ 263 (319)
T 3n37_A 242 AETPWADD-VKAFLCYNANKALM 263 (319)
T ss_dssp TTSSCHHH-HHHHHHHHHHHHHH
T ss_pred hccCcHHH-HHHHHHHHHHHHHH
Confidence 67899776 99999999999973
No 13
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=1.7e-64 Score=468.15 Aligned_cols=253 Identities=18% Similarity=0.258 Sum_probs=238.1
Q ss_pred CCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCCh
Q 023028 32 QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI 111 (288)
Q Consensus 32 ~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~ 111 (288)
...+.++.|++|||.+++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++++.+.+.++.
T Consensus 25 ~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~v~~ 104 (350)
T 4dr0_A 25 IYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDG 104 (350)
T ss_dssp CCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCS
T ss_pred cccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccch-----HHHHHHHHHHH
Q 023028 112 PEARAFYGFQIAMEN-IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-----SFAERLVGFAC 185 (288)
Q Consensus 112 ~E~~~~~~~Q~~~E~-iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~-----~~~~~lv~~~~ 185 (288)
||+++|+++|+++|+ ||+++||+|+++++ +++++.++|+++.++|.+++|++|+.++|++.. ++++++|++++
T Consensus 105 pE~~~~~~~q~~~E~aiHs~sYs~il~tl~-~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~~~~~~~~~~~lva~~~ 183 (350)
T 4dr0_A 105 HQRKAVLNFMAMMENAVHAKSYSNIFMTLA-PTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVY 183 (350)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHS-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 999999999999999 99999999999997 678888999999999999999999999997533 58999999999
Q ss_pred hhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHH
Q 023028 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQF 258 (288)
Q Consensus 186 lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~e~~~eave~E~~~ 258 (288)
+||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++ +++++++++||++|++|
T Consensus 184 lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~i~~l~~eave~E~~~ 263 (350)
T 4dr0_A 184 LESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEY 263 (350)
T ss_dssp HHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988764 44789999999999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028 259 VCEALPCALIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 259 ~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
++++++ .+||+.+ +++||+|+||+||.
T Consensus 264 ~~~~~~--~iGl~~~-~~~Yi~y~An~~L~ 290 (350)
T 4dr0_A 264 TEDLYD--QVGLSHD-VKKFIRYNANKALM 290 (350)
T ss_dssp HHHHHG--GGTCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHh--cCCcHHH-HHHHHHHHHHHHHH
Confidence 999874 4999865 99999999999983
No 14
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=4e-64 Score=462.84 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=235.9
Q ss_pred CcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHH
Q 023028 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (288)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E 113 (288)
.+.++.|++||+.|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.||
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pE 96 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 96 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHH
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHh
Q 023028 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (288)
Q Consensus 114 ~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~ 193 (288)
+++|+++|+++|+||+++||+++++++. +.+++++|+++.++|.+++|++|+.+++++. ++++++++++++||++|||
T Consensus 97 ~~~~~~~q~~~E~iHs~sYs~il~tl~~-~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 174 (329)
T 3dhz_A 97 EEAVYTNIAFMESVHAKSYSNIFMTLAS-TPQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFYS 174 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhhCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 4567889999999999999999999999875 4578999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHHhcCCC
Q 023028 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (288)
Q Consensus 194 ~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~e~~~eave~E~~~~~~~~~~~ 266 (288)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++ +++++++++||++|++|+++++ +
T Consensus 175 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~~~l~~eave~E~~~~~~~~--~ 252 (329)
T 3dhz_A 175 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 252 (329)
T ss_dssp HHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999999988764 3488999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC
Q 023028 267 LIGMNSSLMSQYIKFVADRLLH 288 (288)
Q Consensus 267 ~~Gl~~~~~~~yi~y~ad~~L~ 288 (288)
.+||+.+ +++||+|+|||||.
T Consensus 253 ~iGl~~~-~~~yi~y~An~~L~ 273 (329)
T 3dhz_A 253 DLGWTED-VKRFLRYNANKALN 273 (329)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHH
T ss_pred ccCchHH-HHHHHHHHHHHHHH
Confidence 7899776 99999999999973
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=100.00 E-value=6.6e-60 Score=433.32 Aligned_cols=253 Identities=16% Similarity=0.278 Sum_probs=228.0
Q ss_pred cccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023028 23 EDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (288)
Q Consensus 23 ~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~ 102 (288)
+..+++|.+|+.||+++|++ +|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.
T Consensus 12 ~~~~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~ 85 (323)
T 3ee4_A 12 RTRSGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQ 85 (323)
T ss_dssp CCCCGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccchhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34689999999999999995 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHH-HHHhc------c
Q 023028 103 ARFLNDIQI---PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWA-LDWIH------S 172 (288)
Q Consensus 103 ~~l~~~~~~---~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i-~~~~~------~ 172 (288)
.+++.++. ||+++|+++|+++|+||+++||+++++++.+++ +|+++.++|.+++|..+. ...+. +
T Consensus 86 -~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~----~f~~~~~~p~lr~k~~~~l~~~~~~~~~~~~ 160 (323)
T 3ee4_A 86 -PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED----LHRYLDDLPAYRQIFYAELPECLNALSADPS 160 (323)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC----CGGGGTTCHHHHHHHHTHHHHHHHHHHHCCC
T ss_pred -HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHcCHHHHHHHHHHHHHHHHhhccCCC
Confidence 57877764 999999999999999999999999999987653 899999999999986532 22221 2
Q ss_pred chHHHHHHHHHH-HhhhhHhHhHHHHHH-HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch------HHHH
Q 023028 173 SDSFAERLVGFA-CVEGIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH------WQKV 244 (288)
Q Consensus 173 ~~~~~~~lv~~~-~lEgi~f~~~F~~~~-~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~------~~~i 244 (288)
+.++++++++++ ++||++|||||++++ +|+++|+|||++++|++|.|||++|+.|++.+++.++++.| +++|
T Consensus 161 ~~~~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~v 240 (323)
T 3ee4_A 161 PAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRM 240 (323)
T ss_dssp HHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHH
Confidence 356899999995 899999999997554 89999999999999999999999999999999999988765 4889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHhhcC
Q 023028 245 HHMVHEAVEIETQFVCEALPCAL-IGMNSSLMSQYIKFVADRLL 287 (288)
Q Consensus 245 ~e~~~eave~E~~~~~~~~~~~~-~Gl~~~~~~~yi~y~ad~~L 287 (288)
++++.+||++ ++|+.+.+|.++ +|||.+++++||+|+||+||
T Consensus 241 ~el~~eave~-~e~~~~~~~~~~~lGl~~~~~~~Yi~y~AnrrL 283 (323)
T 3ee4_A 241 NELIPLALRL-IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRF 283 (323)
T ss_dssp HHHHHHHHHH-HHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999998887666 49999999999999999997
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=98.13 E-value=8.5e-05 Score=71.13 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=111.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~ 150 (288)
....+++.-+.+++..++.+..++-......+ .+.+..+++.++.+.++|+.+|.+|+..-.++...+......-+ -|
T Consensus 80 ~~~~~dprw~~~lk~~~~~~~~~Ey~a~~~~a-~~~r~ap~~~~rnaaa~q~lDElRHaQ~~~~~~~el~~~~~~~~-~f 157 (491)
T 2inc_A 80 FVDRADPGWVSTMQLHFGAIALEEYAASTAEA-RMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWD-WA 157 (491)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGG-HH
T ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc-cc
Confidence 34568888888888888888777766555544 56788999999999999999999999998887777543211100 02
Q ss_pred H--HHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHH
Q 023028 151 N--AIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227 (288)
Q Consensus 151 ~--~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f 227 (288)
+ ...++|..+.--..+.+..-+ ....+.+++.. +.|+++..-.|..+...+..+-=+.+..++..|+.||++|..+
T Consensus 158 ~~~~~~~~p~~~~~R~~~ed~~~t-~D~~E~~ialnlv~E~~~tnll~~~f~~~Aa~nGD~lt~~v~~siq~DEaRH~~~ 236 (491)
T 2inc_A 158 HKAIHTNEWAAIAARSFFDDMMMT-RDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQ 236 (491)
T ss_dssp HHGGGSCCHHHHHHHHHHHHHTTS-SCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHhhcCcccHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 1 233345443322222222122 23567777775 5699766555544445554443456999999999999999999
Q ss_pred HHHHHHHHHhh
Q 023028 228 ACLLYSLLRKR 238 (288)
Q Consensus 228 ~~~l~~~l~~e 238 (288)
|..+++.+.+.
T Consensus 237 g~~ll~~ll~d 247 (491)
T 2inc_A 237 GGPSLKILVEN 247 (491)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988765
No 17
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=97.97 E-value=0.00092 Score=64.13 Aligned_cols=166 Identities=13% Similarity=-0.031 Sum_probs=110.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKH 147 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~---~~~~e~~ 147 (288)
....+++.-+.+++..++.++.++-......+ .+.+..+++.++..+++|+.+|.+|+..-.++...+. .||.--.
T Consensus 77 ~~~~~dprW~~~Lk~~l~av~~~EY~a~~~~a-~~~r~ap~~~~rnaaa~qalDElRHaQ~~~~l~k~~~~~~~dp~Gfd 155 (512)
T 1mty_D 77 AGVRVHPKWNETMKVVSNFLEVGEYNAIAATG-MLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHN 155 (512)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTT
T ss_pred CcccCCHHHHHHHHHHHcccCHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCC
Confidence 35679999999999999999888866665444 5678899999999999999999999998544333332 1211100
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHH
Q 023028 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 226 (288)
Q Consensus 148 ~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~ 226 (288)
.--.+..++|..+-=-+.+.....+ .+..+.+++.. +.|.++..-.|..+...+..+-=..+..++.-|..||++|..
T Consensus 156 ~~r~~~~~~p~~q~~R~~fe~~~~t-~D~~E~~valn~v~E~~~tnll~~~~~~~Aa~nGD~~tptv~~siqsDEaRH~~ 234 (512)
T 1mty_D 156 DARRTRTIGPLWKGMKRVFSDGFIS-GDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMA 234 (512)
T ss_dssp THHHHGGGSSHHHHHHHHHTHHHHS-SCHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCchhhhHHHHHHHhhc-CChHHHhhhhhhhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 0112344466543322222111112 23567777775 568876655555544444433334499999999999999999
Q ss_pred HHHHHHHHHHhh
Q 023028 227 FACLLYSLLRKR 238 (288)
Q Consensus 227 f~~~l~~~l~~e 238 (288)
.|..+++.+.+.
T Consensus 235 ~g~~ll~~Lled 246 (512)
T 1mty_D 235 NGYQTVVSIAND 246 (512)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHcC
Confidence 999999988865
No 18
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=97.84 E-value=0.0038 Score=56.55 Aligned_cols=165 Identities=14% Similarity=-0.023 Sum_probs=101.9
Q ss_pred CCCCCcc-cCccc------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHccCC--------hHH
Q 023028 56 SFWTAEE-VDLSQ------DVQHW----ERLLDSEKHFISHVLAFFAASDGIVLENLA---ARFLNDIQ--------IPE 113 (288)
Q Consensus 56 ~fW~p~e-id~s~------D~~~w----~~L~~~er~~~~~~l~~l~~~d~~v~~~l~---~~l~~~~~--------~~E 113 (288)
..|.|.+ +|.++ +..+| +.||+.-.-.+... .+..+++. ..+..... .+.
T Consensus 35 ~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~~l~d~~~v~lv~~--------~iTEd~LPtY~~~L~~~fgvrd~~g~~~~~ 106 (338)
T 2uw1_A 35 KSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGD--------MITEEALPTYMSMLNRCDGIKDETGAEPSA 106 (338)
T ss_dssp GCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHHH--------HHHHHTHHHHHHHHTTSTTTSCSSSSCCSH
T ss_pred hcCCchhcCCCccccchhhhcccccHhhccCCHHHHHHHHHH--------HHhhhcchHHHHHHHHHcCcccccCCCcch
Confidence 5899988 66555 55677 47887766544332 22222221 12223321 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhhH
Q 023028 114 ARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHSS--DSFAERLVGFACVEGIF 190 (288)
Q Consensus 114 ~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~--~~~~~~lv~~~~lEgi~ 190 (288)
...|.....++|+.|+.+-..++-.-+. ||...+ .. +...+..-++.+ .+....++.-.+.|.--
T Consensus 107 w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE---~~---------~~~~i~~Gfd~~~~~~p~~~~vy~sfQE~AT 174 (338)
T 2uw1_A 107 WAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIE---KT---------IQYLIGSGMDIKSENSPYLGFIYTSFQERAT 174 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHH---HH---------HHHHHHHCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHH---HH---------HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999999885443 776621 11 111222223311 12334544335667654
Q ss_pred hHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 023028 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (288)
Q Consensus 191 f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (288)
+ .++.-+.-+++..-=|.++++...|++||.+|..|...++..+.+..+.
T Consensus 175 ~-vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd 224 (338)
T 2uw1_A 175 F-ISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPD 224 (338)
T ss_dssp H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 3 3444444444434468899999999999999999999999887765543
No 19
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=97.68 E-value=0.0055 Score=55.53 Aligned_cols=180 Identities=9% Similarity=-0.083 Sum_probs=116.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCChHHHHH
Q 023028 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSE---MYSLLLETYIKDSKEKHR 148 (288)
Q Consensus 72 w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e---~Ys~il~~~~~~~~e~~~ 148 (288)
+..+++.-++.++..++-+-..+-...-+.+ .+....+.+.++....+|+++|..|+. -|++-+....++...-..
T Consensus 103 ~~~ld~~w~~~l~~~l~p~~~~e~~~~~~~a-~~~r~~~~~~i~n~~~~qa~DelR~aQ~~~y~~~~L~~~~~~~g~~~~ 181 (322)
T 2inc_B 103 DQMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKR 181 (322)
T ss_dssp GGGSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTS
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchH
Confidence 4568888888888777666665544333333 467788899999999999999999999 777777655443211000
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHH
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f 227 (288)
--..+.++|..+---..+.+.+-. .++++.+++.. ++|+++..-.|..+-..+..+==..+..++..+.-||++|...
T Consensus 182 ~k~~w~~~p~wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~ 260 (322)
T 2inc_B 182 ERDVWENDPAWQGFRELIEKALIA-WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRW 260 (322)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHH
Confidence 112456677665533333333333 34678888886 4699866555555443333322356888889999999999999
Q ss_pred HHHHHHHHHhhch-HHHHHHHHHHHHH
Q 023028 228 ACLLYSLLRKRLH-WQKVHHMVHEAVE 253 (288)
Q Consensus 228 ~~~l~~~l~~e~~-~~~i~e~~~eave 253 (288)
+..+++.+.+++. ...+..-+.....
T Consensus 261 ~~alvk~~~~~~~N~~~lq~wi~~w~~ 287 (322)
T 2inc_B 261 SSALVKMALEKEGNREVLQKWVAKWEP 287 (322)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 9999999987643 3334444333333
No 20
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=97.68 E-value=0.0018 Score=61.90 Aligned_cols=178 Identities=14% Similarity=0.046 Sum_probs=116.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~ 150 (288)
-+.++++.-..+++..++.+..++-..... ...+.+..++++++..+.+|+.+|.+|+..=.+....+..++.. |
T Consensus 81 ~~~~ldp~W~~~Lk~~~~av~~~Ey~a~~g-~A~~~R~aps~~~rn~~~fQ~~DElRHaQ~q~y~~~~l~~~~~g----F 155 (500)
T 3ge3_A 81 IYENSDPGWISTLKSHYGAIAVGEYAAVTG-EGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQ----F 155 (500)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGG----G
T ss_pred CcccCCHHHHHHHHHHhcccchHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc----c
Confidence 355788998899999999999888666443 34678889999999999999999999999877777777543322 2
Q ss_pred HHHh---hCHHHH--HHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhH
Q 023028 151 NAIE---NIPCVA--QKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 224 (288)
Q Consensus 151 ~~~~---~~p~l~--~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H 224 (288)
++-. .+|.-+ .=-+.+-+.+- ..+.++.+++.. +.|.++=-..|..+...+..+==..+..++.-+..||++|
T Consensus 156 d~~~r~~~d~~W~~~~~R~~fE~~~~-t~Dw~E~~valnlvfEp~~tnll~v~l~~~Aa~NGD~~tptl~~S~qsDe~Rh 234 (500)
T 3ge3_A 156 DWAWRAYHSNEWAAIAAKHFFDDIIT-GRDAISVAIMLTFSFETGFANMQFLGLAADAAEAGDYTFANLISSIQTDESRH 234 (500)
T ss_dssp GHHHHGGGSCCHHHHHHHHHHHHHTT-SSCHHHHHHHTCCCCCCCCHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhCchhhhhHHHHHHHHHHc-cCCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHhHHHH
Confidence 2111 122211 10111111121 223667777774 4676543333334444454444466888889999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 023028 225 CDFACLLYSLLRKRLHWQKVHHMVHEAVEI 254 (288)
Q Consensus 225 ~~f~~~l~~~l~~e~~~~~i~e~~~eave~ 254 (288)
...+..+++.+.+.+.++.+...++...-.
T Consensus 235 ~~~g~alv~~lle~~~~~n~q~wld~wfwr 264 (500)
T 3ge3_A 235 AQQGGPALQLLIENGKREEAQKKVDMAIWR 264 (500)
T ss_dssp GGGHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999888764444455555554443
No 21
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=97.46 E-value=0.0067 Score=55.06 Aligned_cols=166 Identities=10% Similarity=-0.067 Sum_probs=108.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCChHHHHH
Q 023028 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEM---YSLLLETYIKDSKEKHR 148 (288)
Q Consensus 72 w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~---Ys~il~~~~~~~~e~~~ 148 (288)
+..+++.-+..++..++-+..++-...-+- ..+....+.+.++....+|+++|-.|+.. +++-+..-+.+-+....
T Consensus 107 ~~~ld~~w~~~l~~~l~pl~~~e~~a~m~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~~q~~~~~l~~~~~~~~~~~~ 185 (327)
T 3ge3_B 107 DQMVREGWEHTMARCYSPLRYLFHCLQMSS-AYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEH 185 (327)
T ss_dssp GGGSCTTHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTS
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCchhH
Confidence 457888888888888877777765543332 35777889999999999999999999544 77755544332110000
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHH
Q 023028 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227 (288)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f 227 (288)
--..+.++|.-+.--.++-+.+. ..++++.+++.. ++|+++..-.|..+-..+..+==..+..++..+..||++|...
T Consensus 186 ~k~~W~~dp~Wq~~R~~~Ed~~~-~~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~Aa~nGD~~t~~l~~s~qsD~~Rh~~~ 264 (327)
T 3ge3_B 186 ERELWEKEPGWQGLRELMEKQLT-AFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRW 264 (327)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTT-CCSHHHHHHHHHHTHHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcchHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHH
Confidence 11234455655432122222221 224678888875 6898765544544444444333467888889999999999999
Q ss_pred HHHHHHHHHhhc
Q 023028 228 ACLLYSLLRKRL 239 (288)
Q Consensus 228 ~~~l~~~l~~e~ 239 (288)
+..+++.+.+++
T Consensus 265 ~~alvk~ll~~~ 276 (327)
T 3ge3_B 265 SKALVKHALENP 276 (327)
T ss_dssp HHHHHHHHTTST
T ss_pred HHHHHHHHhcCh
Confidence 999999888774
No 22
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=97.29 E-value=0.0049 Score=54.48 Aligned_cols=173 Identities=17% Similarity=0.070 Sum_probs=94.8
Q ss_pred HHHHhcCCCCCcc-cCccc-------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccC-ChHHHHH
Q 023028 50 YKKAQASFWTAEE-VDLSQ-------DVQHW----ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI-QIPEARA 116 (288)
Q Consensus 50 ykk~~~~fW~p~e-id~s~-------D~~~w----~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~-~~~E~~~ 116 (288)
+.+ ....|.|.+ +|.++ +..+| .+||+.-+.++...+--=-.+.+.++ . +.... .++....
T Consensus 25 ~l~-~~~~W~p~d~lPw~~~~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP~Y~~-~----L~~~~~~d~~w~~ 98 (275)
T 1za0_A 25 HLD-TEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHR-E----LVEHFILEDWWGR 98 (275)
T ss_dssp HHH-TCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC--------------------CHHHH
T ss_pred Hhh-hhccCChhhcCCCcccccchhcccccccHhhccCCHHHHHHHHHHHHHhhcchHHHH-H----HHHhcCCCchHHH
Confidence 344 445799998 65441 33455 36888777655443211111222221 1 22222 1356778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhhHhHhH
Q 023028 117 FYGFQIAMENIHSEMYSLLLETYI-KDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGS 194 (288)
Q Consensus 117 ~~~~Q~~~E~iH~e~Ys~il~~~~-~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~~~ 194 (288)
|.....++|+.|+.+-..++-.-+ .||.. +.. . +...+.+-++. ..+....++.-.+.|.--+
T Consensus 99 w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---lE~------~---~~~~i~~g~~~~~~~p~~~~vy~~fqE~aT~--- 163 (275)
T 1za0_A 99 WLGRWTAEEHLHAIALREYLVVTREVDPVA---NED------V---RVQHVMKGYRAEKYTQVETLVYMAFYERCGA--- 163 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCTTT---TTC------T---TC----------CCCHHHHHHHHHHHHHHHH---
T ss_pred HhhhHhHHHHHHHHHHHHHHHHhCCCCHHH---HHH------H---HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH---
Confidence 999999999999999999886432 25544 110 0 01111111211 1112344443345676432
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHH
Q 023028 195 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKV 244 (288)
Q Consensus 195 F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i 244 (288)
.....+++.--=|.++++...|++||.+|..|...+++.+.+..|...+
T Consensus 164 -v~y~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~~~ 212 (275)
T 1za0_A 164 -VFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETI 212 (275)
T ss_dssp -HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 2222334444468899999999999999999999999988876665443
No 23
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=97.05 E-value=0.045 Score=49.18 Aligned_cols=171 Identities=12% Similarity=0.002 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 023028 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (288)
Q Consensus 75 L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~ 154 (288)
+|+.-|..+.+.++.++-.+-+.+.-+. ......|+.+.+.-++..+.+|.-|...+...+.+++.++++ +.....
T Consensus 25 mP~~Yr~~L~~ll~~laD~ELi~~~rl~-ew~~~AP~Lee~iALa~ia~DE~GHa~~l~~~a~~lG~d~d~---l~~~~r 100 (311)
T 3pvt_A 25 MPDAYRKTLIRQIGQHAHSEIVGMLPEG-NWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED---IYQKML 100 (311)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTHHHHH-TTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHh
Confidence 8999999999999998887766665554 466788999999999999999999999999999999777655 332222
Q ss_pred hCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhHhHhHHHHHHHHH-HcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 155 NIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 155 ~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~-~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
... .|.. ..++ .+.+|+..++--.+. .+++..++.. .+.-.+-++.+...|++.|+.|..++...+
T Consensus 101 ~~~---~~~~---~lfe~P~~dWad~vvr~~l~------D~~a~~~~~~L~~ss~~plA~~a~ki~kEE~yH~~~g~~wv 168 (311)
T 3pvt_A 101 DGR---MKYS---SIFNYPTLSWADIGVIGWLV------DGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEAC 168 (311)
T ss_dssp TTS---SCCC---GGGGSCCCSHHHHHHHHHHH------HHHHHHHHHTTTTCSBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cch---hhhh---hHHhCCCCCHHHHHHHHHHH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0000 0111 234566555433333 3444443332 245567899999999999999999999988
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 233 SLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 233 ~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
..|...- ++.++.+.+|++.=--++..+|
T Consensus 169 ~rL~~gt--~esr~r~Q~Al~~~wp~~~elF 197 (311)
T 3pvt_A 169 MALAQGS--EAQKQMLQDAINRFWWPALMMF 197 (311)
T ss_dssp HHHHTSC--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCC--HHHHHHHHHHHHHHHHHHHHHc
Confidence 8877432 3456777788775555555555
No 24
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=96.93 E-value=0.047 Score=50.71 Aligned_cols=164 Identities=7% Similarity=-0.148 Sum_probs=109.5
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH-
Q 023028 71 HWERLLDSEK-HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKE- 145 (288)
Q Consensus 71 ~w~~L~~~er-~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~---~~~~e- 145 (288)
.+..|++.-+ +.++..++.+..++-....+.+ .+......+.++....+|+++|-.|+..-+++...+. .++.+
T Consensus 135 ~~~~ld~~w~~~~l~~~l~p~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~g~~~~ 213 (395)
T 1mhy_B 135 SIRTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDAS 213 (395)
T ss_dssp GGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 3457899999 8899999988888876655544 5678889999999999999999999999998865552 22211
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH-hccchHHHHHHHHHH-HhhhhHhHhHHHHH-HHHHHcCCCccHHHHHHHHHhhhh
Q 023028 146 KHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGFA-CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEG 222 (288)
Q Consensus 146 ~~~~~~~~~~~p~l~~k~~~i~~~-~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~-~~l~~~~~m~g~~~~i~~I~RDE~ 222 (288)
.+.-=..+.++|.-+---..+-+. +.. .++++.+++.. ++|+++..-.|..+ ..++..+==..+..++.-+.-||+
T Consensus 214 ~~~~k~~W~~dp~Wq~~R~~~E~~~l~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~~Aa~nGD~~tptl~~s~q~D~~ 292 (395)
T 1mhy_B 214 TDVPKKIWTTDPIYSGARATVQEIWQGV-QDWNEILWAGHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQ 292 (395)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHHHHHHSC-CCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCcchHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 000112344555432211122222 222 23678888886 56998766555555 455544323344555556899999
Q ss_pred hHHHHHHHHHHHHH
Q 023028 223 LHCDFACLLYSLLR 236 (288)
Q Consensus 223 ~H~~f~~~l~~~l~ 236 (288)
+|...+..+++.+.
T Consensus 293 Rh~~~~~alvk~ll 306 (395)
T 1mhy_B 293 TTRGAIDDLFVYCL 306 (395)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 25
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=96.91 E-value=0.036 Score=53.18 Aligned_cols=156 Identities=12% Similarity=-0.020 Sum_probs=107.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHH
Q 023028 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD-----SKEK 146 (288)
Q Consensus 72 w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~-----~~e~ 146 (288)
...+++.-++.++..++.+..++-....+.+ .+......+..+..+.+|+++|..|+..-+++...+.+. ...+
T Consensus 86 ~~~~d~~W~~~Lk~~l~al~~~EYgA~~~~a-~~~r~~~g~~~~na~~fqa~DeLRhAQ~~~~~~~~l~~~~~Gf~d~a~ 164 (511)
T 3u52_A 86 QNISDARYVNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPH 164 (511)
T ss_dssp GGSSCGGGHHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhhh
Confidence 4567888888888888988888876655444 577788999999999999999999999888877666321 1111
Q ss_pred HHHHHHHhhCHHH---HHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhh
Q 023028 147 HRLFNAIENIPCV---AQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG 222 (288)
Q Consensus 147 ~~~~~~~~~~p~l---~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~ 222 (288)
..+|.- +.| .++-+.. +. +.++.+|+.. +.|+++---.|..+...+..+==..+..++.-+..||+
T Consensus 165 -------~~d~~W~~~~~R-~~vEd~~-t~-Dw~E~~vA~nlv~E~l~tnLl~~~~~~~Aa~nGD~~t~t~~~s~qsDes 234 (511)
T 3u52_A 165 -------MHDRVWYLSVPK-SFFDDAR-SA-GPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEA 234 (511)
T ss_dssp -------HHTTCGGGHHHH-HHHHHHH-HS-CHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------hcCccccchhhH-HHHhhcc-cc-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHH
Confidence 112221 122 2222222 12 3568888885 57887555455555455555434567777899999999
Q ss_pred hHHHHHHHHHHHHHhh
Q 023028 223 LHCDFACLLYSLLRKR 238 (288)
Q Consensus 223 ~H~~f~~~l~~~l~~e 238 (288)
+|...+..+++.+..+
T Consensus 235 Rh~~w~~alvk~~l~~ 250 (511)
T 3u52_A 235 RHMTLGLEVIKFILEQ 250 (511)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999977643
No 26
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=96.84 E-value=0.057 Score=49.03 Aligned_cols=162 Identities=9% Similarity=-0.039 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH-HHHHH
Q 023028 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE-KHRLF 150 (288)
Q Consensus 72 w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e-~~~~~ 150 (288)
+..+++.-++.++..++-+...+-...-+.+ .+....+.+.++....+|+++|-.|+..-+++...+..++.. ...--
T Consensus 108 ~~~ld~~w~~~l~~~~~plr~~E~ga~~~~a-~~~r~~~~~~i~na~~fqa~DelRhaQ~ls~~~l~l~~~~g~~~~~~k 186 (333)
T 3u52_C 108 LTRLSEETQKQLLRLLVPLRHVELGANMNNA-KIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESK 186 (333)
T ss_dssp TTTSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred cccCCHHHHHHHHHHcchHhHHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHH
Confidence 4578888888888888777777755443333 577888999999999999999999999888776666443211 11112
Q ss_pred HHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHH-HHcC-CCccHHHHHHHHHhh-hhhHHH
Q 023028 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWL-KKRG-LMPGLTFSNELISRD-EGLHCD 226 (288)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l-~~~~-~m~g~~~~i~~I~RD-E~~H~~ 226 (288)
..+.++|.-+---.++-+.+. ..++++.+++.. ++|+++..-.|..+..- +.+| -+. + ++--++.| |++|..
T Consensus 187 ~~W~~dp~Wq~~R~~~Ed~~~-~~Dw~E~~vA~nlv~E~ll~~L~~~~~~~~aa~~gd~~~--~-~~~s~q~d~~~Rh~~ 262 (333)
T 3u52_C 187 AYWMDDEMWQPMRKLVEDTLV-VDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDV--S-MLTEFMRDWYKESLR 262 (333)
T ss_dssp HHHHHCTTTHHHHHHHHHHTT-CCCHHHHHHHHHTHHHHHHHHHHHTHHHHHHHTTTCGGG--G-GTSHHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcee--h-hhHHHhhhHHHHHHH
Confidence 234567755432122222221 223678888886 58998665555555433 3333 222 2 44445555 999999
Q ss_pred HHHHHHHHHHhh
Q 023028 227 FACLLYSLLRKR 238 (288)
Q Consensus 227 f~~~l~~~l~~e 238 (288)
.+..+++.+.++
T Consensus 263 ~~~alvk~ll~~ 274 (333)
T 3u52_C 263 WTNAMMKAVAGE 274 (333)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988865
No 27
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=96.56 E-value=0.26 Score=44.71 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=94.5
Q ss_pred cCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHcc-CC---hHHHHHHHHHHHHHH
Q 023028 55 ASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAA-----SDGIVLENLAARFLND-IQ---IPEARAFYGFQIAME 125 (288)
Q Consensus 55 ~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~-----~d~~v~~~l~~~l~~~-~~---~~E~~~~~~~Q~~~E 125 (288)
..+|.|.+.-.--+-..|..||++.|..+.+--..-.. .+..+..-+...++.. .+ ....+...-+.+.+|
T Consensus 57 ~~~~~p~ellpl~gtp~w~~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei~DE 136 (336)
T 3chh_A 57 LVPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDE 136 (336)
T ss_dssp TSCSSCGGGCTTTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCChhhccccCCHhHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 34677666665577788999999999877754322222 3333333333344443 12 234444436667899
Q ss_pred HHHHHHHHHHHHH----hcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhc-cchHHHHHHHHH---HHhhhhHhHhHHHH
Q 023028 126 NIHSEMYSLLLET----YIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH-SSDSFAERLVGF---ACVEGIFFSGSFCA 197 (288)
Q Consensus 126 ~iH~e~Ys~il~~----~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~---~~lEgi~f~~~F~~ 197 (288)
+.|+.++.+..+- .+..|.- .+. .+.+-+++ ...+. .+..+-..++.+ .+.|-++= . .
T Consensus 137 ~~Hs~Mf~~~~~~~~~~~G~~~~~---~~p----~~~l~r~l---~~~la~~~~~~~~~l~~~a~~lvaEeiid--~--~ 202 (336)
T 3chh_A 137 SFHTYMHMLAIDRTRELRKISERP---PQP----ELVTYRRL---RRVLADMPEQWERDIAVLVWGAVAETCIN--A--L 202 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC---CCC----CCHHHHHH---HHHHTTCCCHHHHHHHHHHHHHHHHHSBC--H--H
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC---CCC----hHHHHHHH---HHHHccCchhhhhHHHHHHHHHHHHHHHH--H--H
Confidence 9999999999983 4332000 000 01111111 11121 122222222222 23465422 1 1
Q ss_pred HHHHHHcC-CCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 023028 198 IFWLKKRG-LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (288)
Q Consensus 198 ~~~l~~~~-~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (288)
.-.+.+.. +-|-+-.+++.=.+||++|..|+..+++.+....+.
T Consensus 203 ~r~~~~D~~vQP~vR~v~riHv~DEaRH~~fare~~~~~~~~l~~ 247 (336)
T 3chh_A 203 LALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNE 247 (336)
T ss_dssp HHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 22234444 444444555666899999999999999988877664
No 28
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=96.50 E-value=0.081 Score=48.93 Aligned_cols=164 Identities=10% Similarity=-0.137 Sum_probs=107.0
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---h-HH
Q 023028 71 HWERLLDSEK-HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD---S-KE 145 (288)
Q Consensus 71 ~w~~L~~~er-~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~---~-~e 145 (288)
.+..+++.-+ +.++..++.+..++-....+.+ .+....+.+.++....+|+++|-.|+..-++.+..+..+ . +.
T Consensus 127 ~~~~ld~~w~~~~l~~~l~~~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~gf~~~ 205 (384)
T 1mty_B 127 QIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDES 205 (384)
T ss_dssp GGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcch
Confidence 3456888888 8888888888888876665554 467888999999999999999999999988886655311 0 00
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH-hccchHHHHHHHHHH-HhhhhHhHhHHHH-HHHHHHcCCCccHHHHHHHHHhhhh
Q 023028 146 KHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGFA-CVEGIFFSGSFCA-IFWLKKRGLMPGLTFSNELISRDEG 222 (288)
Q Consensus 146 ~~~~~~~~~~~p~l~~k~~~i~~~-~~~~~~~~~~lv~~~-~lEgi~f~~~F~~-~~~l~~~~~m~g~~~~i~~I~RDE~ 222 (288)
...-=..+.++|..+.--+.+... +.. .++++.+|+.. ++|+++..-.|.- +..++..+==..+..++.-+.-||+
T Consensus 206 ~~~~k~~W~~dp~wq~~R~~vE~~~l~~-~Dw~E~~va~nlv~epl~~~L~~~~~~~~~Aa~nGD~~tp~l~~s~q~D~~ 284 (384)
T 1mty_B 206 TAVPKAEWTNGEVYKSARLAVEGLWQEV-FDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQ 284 (384)
T ss_dssp SHHHHHHHHHCSTTHHHHHHHHHHHHTC-CCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCchhHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 000112344555444332333222 221 23677778775 4698765433322 2344443322344555566899999
Q ss_pred hHHHHHHHHHHHHH
Q 023028 223 LHCDFACLLYSLLR 236 (288)
Q Consensus 223 ~H~~f~~~l~~~l~ 236 (288)
+|...+..+++.+.
T Consensus 285 Rh~~w~~alvk~ll 298 (384)
T 1mty_B 285 IAKQGVQDLYYNCL 298 (384)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 29
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Probab=96.18 E-value=0.028 Score=52.33 Aligned_cols=185 Identities=9% Similarity=-0.004 Sum_probs=105.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHH
Q 023028 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL-ETYIKDSKEKHRL 149 (288)
Q Consensus 71 ~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il-~~~~~~~~e~~~~ 149 (288)
-|+.+|+.=|..+.++++.++-++-.-...-. .+....++-..+.-+..-..+|.-|...+.+++ ++|+.|..+ .
T Consensus 97 ~WqemP~eYR~~LiRlI~~haDSEiagve~e~-~wi~~APSL~~k~~L~aiVqDE~gHg~~mlyllae~fG~Dr~e---~ 172 (481)
T 3pf7_A 97 VWQEVPGEYRSTLRRIIVTQGDTEPASVEQQR-HLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGRE---E 172 (481)
T ss_dssp CBSSCCGGGHHHHHHHHHHHHHHHHHHHHHHT-TGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---H
T ss_pred chhhCCHHHHHHHHHHHHHHhhhHHhhchhhh-hHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHH---H
Confidence 38899999999999999998887754332222 234456666665555556789999999888888 666533322 3
Q ss_pred HHHHhhCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHH
Q 023028 150 FNAIENIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 228 (288)
Q Consensus 150 ~~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~ 228 (288)
.+....-..-..+.-.....++ ...++....+.-.++.+. +-.-+..|.+.. .--++...+.|+..|+.|...|
T Consensus 173 ad~LL~R~sGd~~~pk~L~~FNyPt~~WaD~~~f~~LvDrA----gi~qL~~L~~sS-Y~PlARamr~I~kEEafH~~~G 247 (481)
T 3pf7_A 173 GEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRD----GKFQLASLAESA-FDPLARTCKFMLTEEAHHLFVG 247 (481)
T ss_dssp HHHHHHCCTTCSSSCCSSGGGSSCCCSHHHHHHHHHHTHHH----HHHHHHHHTTCS-BHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcccccccccccCCCCCHHHHHHHHHhhhHH----HHHHHHHHHhCC-cHHHHHHHHHHhhHHHHHHHHH
Confidence 3222100000000000001111 123454443322345553 233333444433 3447788899999999999999
Q ss_pred HHHHHHHHhhc----------hHHHHH-------HHHHHHHHHHHHHHHHhcC
Q 023028 229 CLLYSLLRKRL----------HWQKVH-------HMVHEAVEIETQFVCEALP 264 (288)
Q Consensus 229 ~~l~~~l~~e~----------~~~~i~-------e~~~eave~E~~~~~~~~~ 264 (288)
-..+..+.++. .++.++ +++.++++-=.--+-.+|+
T Consensus 248 e~gl~rli~~t~e~~~~~gt~d~~~~r~~g~i~l~~~Q~alNrWwp~~LdmFG 300 (481)
T 3pf7_A 248 ESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYG 300 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhhhccCcchhhhhhhcccccHHHHHHHHHHHhHHHHHHhC
Confidence 98776665432 234556 6788877743333333443
No 30
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=95.13 E-value=1.2 Score=37.00 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 023028 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (288)
Q Consensus 76 ~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e--~~~~~~~~ 153 (288)
|+.=|++|.++=+-..-++.-..++.. .+...+| +-+-=+..-+-||+.|.+.|.-.=+.+.-.|+- -.+.|...
T Consensus 28 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~llP--~~~dEL~rLakME~rH~kgF~aCGrNL~V~pDm~fA~~fF~~L 104 (244)
T 2oc5_A 28 SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLLP--DHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL 104 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCG--GGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeeEechHHHHHhHH-HHHHHCc--ccHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 466789999998888888888777775 3665544 444556677889999999998888877654432 12233322
Q ss_pred hhCHHHHHHHHHHHHHhccchHHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 154 ENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
..+= .+ ... ......+++.-. ++|. |.-++|.+.. .-.=|-.-++-.-+.+||..|..||-.-+
T Consensus 105 H~nF---q~------A~~-~gkv~TCLlIQaLiIE~-FAIaAYniYI----pVAD~FARkITegVVkDEY~HLNfGe~WL 169 (244)
T 2oc5_A 105 RDNF---QT------ALG-QGKTPTCLLIQALLIEA-FAISAYHTYI----PVSDPFARKITEGVVKDEYTHLNYGEAWL 169 (244)
T ss_dssp HHHH---HH------HHH-TTCHHHHHHHHHTHHHH-HHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HH------HHh-cCCeeehHHHHHHHHHH-HHHHHHhhcc----ccccHHHHHHHHhHHhhHHhhcchHHHHH
Confidence 1110 00 011 112333433332 4554 2223333321 01113334566789999999999997654
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHH
Q 023028 233 SLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSL 274 (288)
Q Consensus 233 ~~l~~e~~~~~i~e~~~eave~E~~~~~~~~-~~~~~Gl~~~~ 274 (288)
+.-. +.+++++.+.-++...+-.+.++..- +..++|++.+.
T Consensus 170 k~~f-~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~Mekea 211 (244)
T 2oc5_A 170 KANL-ESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKED 211 (244)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 3222 12344444444444444444443322 23566777554
No 31
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=93.69 E-value=1.2 Score=32.60 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=55.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 023028 73 ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146 (288)
Q Consensus 73 ~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~ 146 (288)
.+||+..++....+-+..+-++.+. +=...+...++|+++.++.-.+-+|..|.-.+-.++..+ ||...
T Consensus 11 ~~ls~~~~d~~rai~aL~~EleAI~---~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~--dp~~~ 79 (95)
T 1zpy_A 11 QELSDETRDMHRAIISLREELEAVD---LYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAFD 79 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHH
Confidence 4799999998887775555555443 334577889999999999999999999999999999987 66653
No 32
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=92.88 E-value=3.6 Score=34.32 Aligned_cols=200 Identities=16% Similarity=0.048 Sum_probs=120.4
Q ss_pred HHHHHHhcCCCCC-cccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHH-
Q 023028 48 EMYKKAQASFWTA-EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAME- 125 (288)
Q Consensus 48 ~lykk~~~~fW~p-~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E- 125 (288)
.|.++.. |.+ ...|+-+...+ .+||++.-..+..--. .... ...+.++ ......++++.+..+...+..|
T Consensus 11 ~L~~~~~---~~~~~~HPf~~~l~~-G~L~~e~~~~yl~qdy--~yl~-~f~~~~a-~~~~~~~~~~~~~~~~~~i~~e~ 82 (231)
T 1rcw_A 11 QLDLIIQ---NKHMLEHTFYVKWSK-GELTKEQLQAYAKDYY--LHIK-AFPKYLS-AIHSRCDDLEARKLLLDNLMDEE 82 (231)
T ss_dssp HHHHHHH---HTCGGGSHHHHHHHT-TCCCHHHHHHHHHHTH--HHHH-HHHHHHH-HHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhhcccCHHHHHHhC-CCCCHHHHHHHHHHhH--HHHH-HHHHHHH-HHHhcCCCHHHHHHHHHHHHHhc
Confidence 4555444 544 45555443321 3788665543322211 1111 1222222 3445678899888888888888
Q ss_pred ---HHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhHhHhHHHHH-HHH
Q 023028 126 ---NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAI-FWL 201 (288)
Q Consensus 126 ---~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~-~~l 201 (288)
..|.+.|.+.++.++.++++ + ....-.|..+.-.+++.+...+. ++...+.++.+.|++.-. -+... -.+
T Consensus 83 ~~~~~h~~l~~~~~~~~Gi~~~~---~-~~~~~~p~t~~y~~~~~~~~~~~-~~~~~laal~~~E~~~~~-~~~~~~~~~ 156 (231)
T 1rcw_A 83 NGYPNHIDLWKQFVFALGVTPEE---L-EAHEPSEAAKAKVATFMRWCTGD-SLAAGVAALYSYESQIPR-IAREKIRGL 156 (231)
T ss_dssp SSSSCHHHHHHHHHHHTTCCHHH---H-HHCCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTHHH-HHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCHHH---H-hcCCCCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 69999999999999888776 2 22334577777778887766543 355555554345665310 01111 111
Q ss_pred HH-cCCC--ccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 023028 202 KK-RGLM--PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (288)
Q Consensus 202 ~~-~~~m--~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~~ 263 (288)
.. .+.. -+..---..+.-| ..|+..+..++..+.. ...+++.+.+..+++.|..|-+.+.
T Consensus 157 ~~~~~wi~~~~~~~f~~h~~~d-~~h~~~~~~~l~~~~~-~~~~~~~~~~~~~~~le~~fwd~~~ 219 (231)
T 1rcw_A 157 TEYFGFSNPEDYAYFTEHEEAD-VRHAREEKALIEMLLK-DDADKVLEASQEVTQSLYGFLDSFL 219 (231)
T ss_dssp HHHSCCCSGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCChhhhHHHHHHHHHh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2333 2333333556666 4699999988887765 4567899999999999999998765
No 33
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=90.95 E-value=7.3 Score=34.92 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=89.7
Q ss_pred HHHccCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAME-------NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF 176 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E-------~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~ 176 (288)
......++++.+..+.....+| ..|.+.|..+++.++.+++ +......|....-.........+. ++
T Consensus 162 ~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~-----~~~~~~~p~~~~~v~~~~~~~~~~-~~ 235 (332)
T 3bjd_A 162 DLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD-----FQAVSTMPEEIAYLNNRARAFRHA-EV 235 (332)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC-----TTCCCCCHHHHHHHHHHHHHHHCS-ST
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChh-----HhcccCCHHHHHHHHHHHHHHhcC-CH
Confidence 3455678899888888877777 3679999999999987764 122233465555555555544433 24
Q ss_pred HHHHHHHHHhhhhHhHhHHHHH-HHHHHcCCCc-cHHHHHHHHHhhhhhHH-HHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 023028 177 AERLVGFACVEGIFFSGSFCAI-FWLKKRGLMP-GLTFSNELISRDEGLHC-DFACLLYSLLRKRLHWQKVHHMVHEAVE 253 (288)
Q Consensus 177 ~~~lv~~~~lEgi~f~~~F~~~-~~l~~~~~m~-g~~~~i~~I~RDE~~H~-~f~~~l~~~l~~e~~~~~i~e~~~eave 253 (288)
...+.++.+.|+.+. .+|.-+ -.+.+.|.-+ +..---.+|.-|. .|. .....++..+.....+..+......+++
T Consensus 236 ~~alaal~~~E~~~p-~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~-~H~~~~~~~ll~~~~~~~~q~~~~~a~~~~l~ 313 (332)
T 3bjd_A 236 GWGLAVFYITELVVP-GNHEKLYRALLQAGLSEDQAEYYKVHISLVP-PRAKREWQLIARRIPDVQFQNAFLTSLSQHFR 313 (332)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC----CTTHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCcccchHHHHHHHHhH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455544567899754 344333 3666666523 4455668888888 488 3333332322211122345555555668
Q ss_pred HHHHHHHHhc
Q 023028 254 IETQFVCEAL 263 (288)
Q Consensus 254 ~E~~~~~~~~ 263 (288)
.+..|.+.+.
T Consensus 314 ~~~~f~D~l~ 323 (332)
T 3bjd_A 314 VERAYYDAIW 323 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999888653
No 34
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=85.77 E-value=8.4 Score=28.07 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 023028 73 ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145 (288)
Q Consensus 73 ~~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e 145 (288)
.+||+..++....+.+.-+-+|.+ ++=...+...++|+++..+.--+-+|-.|...+-.+++.+ ||..
T Consensus 11 e~Ls~e~~d~~Rai~sl~~EleAI---~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~--Dp~~ 78 (95)
T 3k6c_A 11 QELSDETRDMHRAIISLREELEAV---DLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAF 78 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHH
Confidence 479999888777665544444433 3334567789999999999999999999999999999986 6654
No 35
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=83.83 E-value=16 Score=29.74 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=72.3
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHhhCHHHHHHHHHHHHHhc-cchHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS-----KEKHRLFNAIENIPCVAQKAKWALDWIH-SSDSFA 177 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~-----~e~~~~~~~~~~~p~l~~k~~~i~~~~~-~~~~~~ 177 (288)
..+..-.-+++...+...+..|..|++-|..++..+-.++ ...+ +.. -...|. ..+. +.+++-
T Consensus 49 ~~A~~EG~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~-~v~-~~~~p~---------~~~~~T~eN~~ 117 (179)
T 3qhb_A 49 EIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKR-LVS-TIESQI---------DAVASDSRGLR 117 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHH-HHH-HHHHTH---------HHHHHSHHHHH
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc-ccc-cccccc---------cccCcHHHHHH
Confidence 3445556688999999999999999999999888654331 1111 111 111221 0111 122221
Q ss_pred HHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 178 ERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 178 ~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
+.|-...-.|.--....|.-+.-.++.--++..+..++.|..||..|......++..+.
T Consensus 118 ~~L~~A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l~ 176 (179)
T 3qhb_A 118 RALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLL 176 (179)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233222223333334466666899999999999999999998888877654
No 36
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=82.53 E-value=9.4 Score=33.39 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e 145 (288)
.+......|-++..++..+.+|+.|-.+|.++++.++. +|+.
T Consensus 168 n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~ 210 (275)
T 1za0_A 168 NLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDE 210 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 35567889999999999999999999999999998864 5554
No 37
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=80.63 E-value=24 Score=29.52 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=87.2
Q ss_pred HccCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 106 LNDIQIPE--ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 106 ~~~~~~~E--~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
....++++ .+.++...+..|..|-..+-+-+..++.++++ + ....-.|....-.+++........ +...+.+.
T Consensus 63 ~~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~G~~~~~---~-~~~~~~pat~aY~~~l~~~a~~~~-~~~~la~~ 137 (239)
T 3dde_A 63 GIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDRED---V-LSSKPLPATETLIAYLYWISATGN-PVQRLGYS 137 (239)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHH---H-HTCCCCHHHHHHHHHHHHHHHSSC-GGGGHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHhCCCHHH---H-HhCCCChHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 34456655 77777777778877776666668888777665 2 223446777777888876654332 23333445
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCcc--HHHHHHHHHhhhhhHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLLR-KRLHWQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g--~~~~i~~I~RDE~~H~~f~~~l~~~l~-~e~~~~~i~e~~~eave~E~~~~~ 260 (288)
.++||+. -.+=...-.+.+.--+|. +.=..-...-|+ -|..+...+++.+. +....+.|.+..+.++++...+.+
T Consensus 138 ~~~E~~y-~~~~~~~~~l~~~~~l~~~~~~f~~~h~~~d~-~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~ 215 (239)
T 3dde_A 138 YWAENVY-GYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDA-KHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILD 215 (239)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-HHHHHHHHHHHHHhCcCHHHHHHHHHHHhcch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789985 222222223333322343 222223333455 58888777777663 333456677777777777766665
Q ss_pred H
Q 023028 261 E 261 (288)
Q Consensus 261 ~ 261 (288)
.
T Consensus 216 ~ 216 (239)
T 3dde_A 216 D 216 (239)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=69.52 E-value=37 Score=26.34 Aligned_cols=105 Identities=12% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
..+..-.-|++..++..++..|..|++.+-.++..+. +|.. ..| +.+. .+.|-.-
T Consensus 36 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~~-~p~~---------~~~------------~~~T---~enL~~A 90 (144)
T 4di0_A 36 SKADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAVG-DPAT---------GLP------------FGTS---RQNLQSA 90 (144)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CTTT---------SCC------------CSSH---HHHHHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Cccc---------CCC------------CCcH---HHHHHHH
Confidence 3444455688999999999999999998877776542 4310 001 1111 1111111
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (288)
..-|.--....|..+.-.++.--.+.++..++.|.+||..|......++.
T Consensus 91 ~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~ 140 (144)
T 4di0_A 91 IAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALD 140 (144)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222211122323333355445799999999999999999997776654
No 39
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=68.15 E-value=49 Score=27.21 Aligned_cols=113 Identities=12% Similarity=-0.024 Sum_probs=67.6
Q ss_pred HHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 023028 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (288)
Q Consensus 105 l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (288)
.+..-.-+++..++..++..|..|++-|..++..+.+++. + .+ .|. ..+.+. ...+-...
T Consensus 53 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~----i--~~--~p~---------~~~gst---~enL~~a~ 112 (202)
T 1yuz_A 53 AAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE----K--PT--VAA---------PSAYSC---DLNLISGA 112 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC----C--CC--C-----------CCCCCH---HHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce----e--cc--CCc---------cCCCCH---HHHHHHHH
Confidence 4444556889999999999999999999999998754432 1 00 121 001111 11111111
Q ss_pred HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 185 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 185 ~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
--|.--....+.-+.-.++.-....++..+++|.++|..|......++..+..
T Consensus 113 ~gE~~E~t~my~~~a~~A~eEgd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~ 165 (202)
T 1yuz_A 113 NGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDA 165 (202)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222222222333333554456889999999999999999988877766553
No 40
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=67.72 E-value=25 Score=31.64 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~-~~~e 145 (288)
+++.....|-++..++..+.+|+.|-.+|.++++.++. +|+.
T Consensus 183 r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd~ 225 (338)
T 2uw1_A 183 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDT 225 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 45666789999999999999999999999999998764 5555
No 41
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=67.69 E-value=58 Score=27.80 Aligned_cols=140 Identities=11% Similarity=-0.033 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH-HhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 112 PEARAFYGFQIAMENI-------HSEMYSLLLE-TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 112 ~E~~~~~~~Q~~~E~i-------H~e~Ys~il~-~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
|+...-+..=..+|.= |.+.|.+.++ .++.|++.+ .-.|.-++-++-+.+++ +.+. ..++-++
T Consensus 72 ~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~~-------~p~~sT~~~idt~~~lc-s~d~-~~aLGA~ 142 (244)
T 3b5o_A 72 NGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKNT-------MPSVATSKLLRTVLSLF-DRQV-DYVLGAT 142 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTTC-------CCCHHHHHHHHHHHHHH-TSCH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCcccc-------CCCchHHHHHHHHHHHh-CCCH-HHHHHHH
Confidence 5656666666677755 9999999999 998887552 33355555666677777 5443 4555566
Q ss_pred HHhhhhHhHh--HHHHH-HHHHHcCCCcc-HHHHHHHHHh-hhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 023028 184 ACVEGIFFSG--SFCAI-FWLKKRGLMPG-LTFSNELISR-DEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258 (288)
Q Consensus 184 ~~lEgi~f~~--~F~~~-~~l~~~~~m~g-~~~~i~~I~R-DE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~ 258 (288)
..+|++.-+. -+..+ -.|.+. ..|. .-.-+++=.. +|.-|..--..++..+.+......+.+-+..+++....|
T Consensus 143 yatE~iaipe~~ly~~li~gL~~~-~~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~~~~eef~~~~~G~~~~Lda~~~f 221 (244)
T 3b5o_A 143 YAIEATSIPELTLIVKLVEWLHEG-AIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVW 221 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHC-------CHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhC-CCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 6889884431 22222 244333 3444 2233343334 788899988887776655555677888888888876666
Q ss_pred HHH
Q 023028 259 VCE 261 (288)
Q Consensus 259 ~~~ 261 (288)
-+.
T Consensus 222 Wdg 224 (244)
T 3b5o_A 222 WQE 224 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 42
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=64.20 E-value=67 Score=27.33 Aligned_cols=142 Identities=11% Similarity=-0.093 Sum_probs=85.4
Q ss_pred HccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 023028 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (288)
Q Consensus 106 ~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (288)
+...++ +....+..++..... +.+..+++.++.++++ + ....|.-+.-.+++.....+ .++...++++..
T Consensus 106 ~aka~~-~~~~~~~~~~~~~~~--~lh~~~~~~~Gi~~~~---~---~~~~pat~aYt~~ll~~a~~-g~~~~~laAl~p 175 (258)
T 2a2m_A 106 ATCAQD-ETLREFFKAKAKSYD--EYNETYHQTWHLREAS---G---LIPGTDIKDYADYEAYVAGS-LASPYMCVVMLP 175 (258)
T ss_dssp HHTCSS-HHHHHHHHHHHHHHH--HHHHHHHHTSCBCCGG---G---BCCCHHHHHHHHHHHHHHHH-SCTHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHH---c---cCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 334455 444444433333211 5666677777665554 2 34457777777777765432 246677777766
Q ss_pred hhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 023028 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262 (288)
Q Consensus 186 lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~---RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~~ 262 (288)
++.++...|- .+..... |. .---.||. -|+ -++.....++..+..+.+.+++.+++..+++.|..|-+..
T Consensus 176 C~~~Y~eig~----~l~~~~~-~~-~~Y~~WI~~~Y~~~-~~v~~~~~lld~~~~~~~~~~l~~~F~~a~~lE~~Fwd~a 248 (258)
T 2a2m_A 176 CEYLWPWIAN----FLDGYTP-TN-SLYRFWIEWNGGTP-NGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSS 248 (258)
T ss_dssp HHHHHHHHHH----HHGGGSC-TT-STTHHHHHHHCSCC-HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HHHhccC-CC-chHHHHHHhccCCH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665443332 2222211 21 11235666 677 6777777777766655567889999999999999999876
Q ss_pred cC
Q 023028 263 LP 264 (288)
Q Consensus 263 ~~ 264 (288)
..
T Consensus 249 ~~ 250 (258)
T 2a2m_A 249 TI 250 (258)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 43
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=62.44 E-value=58 Score=26.02 Aligned_cols=101 Identities=10% Similarity=-0.034 Sum_probs=61.6
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHH
Q 023028 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (288)
Q Consensus 103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (288)
...+..-.-|++..++..++..|..|++-+-..+..+ +++.+ .|+.-+
T Consensus 29 A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~i-~~t~e------------nL~~a~------------------- 76 (170)
T 3pwf_A 29 AEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL-GKTPE------------NLQMGI------------------- 76 (170)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHH------------HHHHHH-------------------
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChHH------------HHHHHH-------------------
Confidence 3455666678999999999999999998775554321 11111 111000
Q ss_pred HHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 183 ~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
--|.--....+.-+.-.++.--...++..+++|..||..|......++..+.+
T Consensus 77 --~gE~~e~~~mY~~~a~~A~eeg~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~~ 129 (170)
T 3pwf_A 77 --EGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK 129 (170)
T ss_dssp --HHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --HhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00110011112222223444446888999999999999999999888877753
No 44
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=58.29 E-value=61 Score=26.28 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=41.3
Q ss_pred HHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------h--HHHHHHHHHHHHHHHHHHHH
Q 023028 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------H--WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 199 ~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~--~~~i~e~~~eave~E~~~~~ 260 (288)
+++.+.| ++|++.-+...+.+|.-|..-....++.+-..+ . ...+.+++..+.+.|+..+.
T Consensus 34 ~~f~~~~-l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~~~~~s~~e~le~aL~~Ek~v~~ 104 (189)
T 3uno_A 34 VYFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4556667 999999999999999999985555444332221 1 13466777777777776554
No 45
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=57.79 E-value=88 Score=26.61 Aligned_cols=149 Identities=11% Similarity=-0.075 Sum_probs=95.6
Q ss_pred HHccCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 105 FLNDIQIPEARAFYGFQIAME-NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 105 l~~~~~~~E~~~~~~~Q~~~E-~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
.....++++...++..++... ......+..+++.++.++++ .....-.|..+.-.+++.....+ .++...++++
T Consensus 85 a~aka~~~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~----l~~~~~~pat~aYt~~l~~~a~~-g~~~~~laAl 159 (263)
T 2qcx_A 85 GAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEE----RKAFKPSPTAYSFTSHMYRSVLS-GNFAEILAAL 159 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HHSCCCCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 344567787777777665443 22456666677888777666 22234467777788888776544 3466777777
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCcc--HHHHHHHHHhhh-hhHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHH
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDE-GLHCDFACLLYSLLRKRLH---WQKVHHMVHEAVEIETQ 257 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g--~~~~i~~I~RDE-~~H~~f~~~l~~~l~~e~~---~~~i~e~~~eave~E~~ 257 (288)
..+|.++..-|- .+..... |. ..+=|+.=.-+| .-|+.....++..+....+ .+++.+++..+++.|..
T Consensus 160 ~pC~w~Y~~ig~----~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~~~~~~l~~~F~~a~~lE~~ 234 (263)
T 2qcx_A 160 LPCYWLYYEVGE----KLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQ 234 (263)
T ss_dssp HHHHHHHHHHHH----HHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 777776543332 2333322 33 233333334455 5789999999888765544 35688999999999999
Q ss_pred HHHHhc
Q 023028 258 FVCEAL 263 (288)
Q Consensus 258 ~~~~~~ 263 (288)
|-+...
T Consensus 235 Fwd~a~ 240 (263)
T 2qcx_A 235 FWGMAY 240 (263)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998766
No 46
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=57.72 E-value=61 Score=24.71 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred HHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHH
Q 023028 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLET--YIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (288)
Q Consensus 105 l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~--~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (288)
.+..-.-|.+..++-.|+..|..|++.+-..+.. ++ .|. . ..| +.+....++.
T Consensus 33 ~a~~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg-~p~--------~-~~p------------~~~~~e~L~~--- 87 (144)
T 1j30_A 33 RADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT-DPA--------T-DKP------------IGTLEQMIES--- 87 (144)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCB-CTT--------T-SCB------------CSSHHHHHHH---
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCC--------c-CCC------------CccHHHHHHH---
Confidence 3334455889999999999999999988877776 53 331 0 112 1111111111
Q ss_pred HHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 183 ~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
..-.|.--....+.-+...++....+.+...++.|..||..|......++..+.
T Consensus 88 al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 88 AIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222233344445566677899999999999999999998887776554
No 47
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=55.07 E-value=74 Score=24.91 Aligned_cols=107 Identities=12% Similarity=-0.031 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 023028 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGI 189 (288)
Q Consensus 110 ~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi 189 (288)
.-+.+..++..++.+|..|++.+...+..+++.|.-. .+. | .....+....+-...-.|.
T Consensus 41 ~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~-----~~~--~------------~~~~~~~~e~l~~al~~E~- 100 (179)
T 1nfv_A 41 DYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQ-----KEG--K------------VVTGQAVPVIYESDADQED- 100 (179)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-----CSS--C------------CCCSCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCC-----CCC--c------------CCCCCCHHHHHHHHHHHHH-
Confidence 3488999999999999999999999999887654210 000 0 0000111111111111222
Q ss_pred HhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 190 ~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
.....+.-+...+....-+.+..++..+..||.-|......++..+.
T Consensus 101 ~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l~ 147 (179)
T 1nfv_A 101 ATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK 147 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333334444445689999999999999999988877766554
No 48
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=54.52 E-value=25 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 023028 208 PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 208 ~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~ 260 (288)
...-++|.-|.+||-.|...++.++. +. +++.-.+-+..|+.-|.+=.+
T Consensus 61 ee~k~iI~eIr~DE~rH~~~F~~lY~---TG-~p~sY~eGL~~A~~~Eqeave 109 (115)
T 2hz8_A 61 PEKRQVIDKILEDEEKHIEWLKAASK---QG-NAEQFASLVQQILQDEQRHVE 109 (115)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHH---SS-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hC-ChHhHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999887 32 445666777778777766443
No 49
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=54.20 E-value=59 Score=23.53 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=38.6
Q ss_pred HHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 175 SFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 175 ~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
.+.+++.+.. =+|.|-+|...+.. -.-|.+..++.-|+.+|-.|.+....+++.
T Consensus 19 d~~Rai~sl~~EleAI~~Y~q~a~~------~~d~~~k~vl~~i~~EEkeH~g~~lelLrr 73 (95)
T 3k6c_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRR 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555443 27788777665544 456899999999999999999976665443
No 50
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=54.07 E-value=1.1e+02 Score=26.36 Aligned_cols=142 Identities=14% Similarity=0.042 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH-HHhhhhH
Q 023028 112 PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIF 190 (288)
Q Consensus 112 ~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~ 190 (288)
.+++.++...+..|..|.+.+..+...++.++++ + ....-.|.-..-..++.+.... .++...+.+. ..+|+..
T Consensus 89 ~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~ee---l-~~~~~~P~~~aYt~~ml~~a~~-g~l~e~lAAl~ya~e~~i 163 (262)
T 3oql_A 89 DMARRWLMRNIRVELNHADYWVNWCAAHDVTLED---L-HDQRVAPELHALSHWCWQTSSS-DSLAVAMAATNYAIEGAT 163 (262)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHH---H-HHTCSCGGGGHHHHHHHHHHHH-SCHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHH---H-hcCCCChHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHh
Confidence 3788888878788888999999999999877776 3 3344567766777777655432 2355555544 3444432
Q ss_pred hHhHHHHHHHHHHcCC-----Ccc-----HHHHHHHHHhhhhhHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHH
Q 023028 191 FSGSFCAIFWLKKRGL-----MPG-----LTFSNELISRDEGLHCDFACLLYSLLRKRL----HWQKVHHMVHEAVEIET 256 (288)
Q Consensus 191 f~~~F~~~~~l~~~~~-----m~g-----~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~----~~~~i~e~~~eave~E~ 256 (288)
---+ .-...|+ .+. ..+-++.=..-...|..-...++..+.... ..+++.+.+..+.+.|.
T Consensus 164 g~~s-----~~~~~g~~~~~~~~~~~~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~~~~~~~e~~~~~~a~~~S~~~~~ 238 (262)
T 3oql_A 164 GEWS-----AVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAELRQAVTKSYDYMY 238 (262)
T ss_dssp HHHH-----HHHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-----HHhhhhHHHhcCCCcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 2100 0011121 111 111122112233469999999999888433 35678889999999999
Q ss_pred HHHHHhc
Q 023028 257 QFVCEAL 263 (288)
Q Consensus 257 ~~~~~~~ 263 (288)
.|.+.+.
T Consensus 239 ~fld~~y 245 (262)
T 3oql_A 239 LFLERCI 245 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 51
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=53.49 E-value=76 Score=27.44 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred hcCCCCCcccCccccHHH-Hh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHH
Q 023028 54 QASFWTAEEVDLSQDVQH-WE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEM 131 (288)
Q Consensus 54 ~~~fW~p~eid~s~D~~~-w~-~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~ 131 (288)
..+-|++.-|..+.|+.. .. ++.- +.-- +..-.++...+.+|.++..+.+-+..|.+|...
T Consensus 122 ~G~pWt~~yv~~~Gdl~aDL~~niaa----------------E~~A-r~~Y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~ 184 (266)
T 1o9i_A 122 NGAAWNAGYVTSSGNLVADMRFNVVR----------------ESEA-RLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQ 184 (266)
T ss_dssp TCCBCBGGGCCCCSCHHHHHHHHHHH----------------HHHH-HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccCCCHHHHHHHHHHH----------------HHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence 347899999988887752 21 2211 1111 112246788899999999999999999999999
Q ss_pred HHHHHHHh
Q 023028 132 YSLLLETY 139 (288)
Q Consensus 132 Ys~il~~~ 139 (288)
|...++.+
T Consensus 185 f~~aLe~l 192 (266)
T 1o9i_A 185 FMKAQEEL 192 (266)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 52
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=53.35 E-value=81 Score=25.17 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=44.7
Q ss_pred HHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------hH--HHHHHHHHHHHHHHHHHHHH
Q 023028 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------HW--QKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 201 l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~~--~~i~e~~~eave~E~~~~~~ 261 (288)
+...| +++++..++-...+|.-|..-....++.+-..| +. ..+.++++.+++.|...+..
T Consensus 36 ~~~~g-f~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~ 105 (189)
T 3oj5_A 36 FDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTDQ 105 (189)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35556 999999999999999999997777666554332 11 34778888888888876654
No 53
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=52.78 E-value=1.1e+02 Score=26.14 Aligned_cols=151 Identities=9% Similarity=0.039 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhhCHHHHHH
Q 023028 85 HVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY-IK-DSKEKHRLFNAIENIPCVAQK 162 (288)
Q Consensus 85 ~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~-~~-~~~e~~~~~~~~~~~p~l~~k 162 (288)
+.+..++-.+-+.+..+. .-....|.-|.+.-++..+-+|.=|+..+-.+..++ +. |.++ + . +...+.
T Consensus 7 ~~l~~laD~elil~~r~~-eW~~~AP~LEediAlanialDelGhar~ly~~a~~l~G~~~~D~---L-a-~~R~~~---- 76 (249)
T 1otk_A 7 AYTLRLGDNCLVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDT---L-A-FTRDER---- 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHH---H-H-HSCCGG----
T ss_pred HHHHHHhCHHHHhccccc-hHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH---H-H-HhcCHH----
Confidence 333444443334443433 245667788999999999999999999999999999 65 3444 2 1 222221
Q ss_pred HHHHHH-Hhc-cchHHHHHHHHHHHhhhhHhHhHHHHHHHHH-HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 023028 163 AKWALD-WIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (288)
Q Consensus 163 ~~~i~~-~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~-~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~ 239 (288)
++-+- .++ .+.+|+..++- -+++.++..+.+-. .+.--+-++.+..+|++.|+.|..++...+..|...
T Consensus 77 -~frn~~l~e~P~gdwa~ti~r------~~l~d~~~~~~~~~L~~ss~~plA~ia~K~~kEe~yH~~h~~~w~~rL~~g- 148 (249)
T 1otk_A 77 -QFSNLLLVEQPNGNFADTIAR------QYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNG- 148 (249)
T ss_dssp -GCCCCGGGGSCCCSHHHHHHH------HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred -HhhccHHHcCCCCCHHHHHHH------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 00000 011 12345544332 23445555543221 234568899999999999999999998887777532
Q ss_pred hHHHHHHHHHHHHHH
Q 023028 240 HWQKVHHMVHEAVEI 254 (288)
Q Consensus 240 ~~~~i~e~~~eave~ 254 (288)
.++-++.+.+|++.
T Consensus 149 -T~Es~~r~Q~Al~~ 162 (249)
T 1otk_A 149 -TDVSGQKMQQAINK 162 (249)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 24446666666663
No 54
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=51.66 E-value=78 Score=24.16 Aligned_cols=110 Identities=14% Similarity=-0.005 Sum_probs=67.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
....-+....++-.|+.+|.-|++.....+..+++.|.-.. +.. | ....+....+-...-.
T Consensus 35 ~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~-----~~~-~-------------~~~~~~~e~l~~~l~~ 95 (161)
T 3uoi_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQR-----IGS-L-------------RIGQTLREQFEADLAI 95 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-----CCC-C-------------CCCSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-----CCC-C-------------CCCCCHHHHHHHHHHH
Confidence 34456788899999999999999999999988876553210 110 0 1011111111111111
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
|.- ....+.-+..++....-+.++..+..+.+||--|..+....+..+.
T Consensus 96 E~~-~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~ 144 (161)
T 3uoi_A 96 EYD-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (161)
T ss_dssp HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122333334455556799999999999999999998887776654
No 55
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=51.28 E-value=84 Score=24.41 Aligned_cols=108 Identities=14% Similarity=-0.053 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 023028 109 IQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEG 188 (288)
Q Consensus 109 ~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEg 188 (288)
..-+....++..|+.+|..|++.+...+..+++.|.-.. +...+. + .+.....+. ..-.|.
T Consensus 37 ~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~-----i~~~~~----------~-~~~~e~l~~---al~~E~ 97 (174)
T 3qb9_A 37 WGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQR-----IGSLRI----------G-QTLREQFEA---DLAIEY 97 (174)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-----CCCCCC----------C-SSHHHHHHH---HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccC-----CCCCCC----------C-CCHHHHHHH---HHHHHH
Confidence 344788999999999999999999999988876543210 110000 0 111111111 111222
Q ss_pred hHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 189 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 189 i~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
- ....+.-+...+....-+.++..++.+.+||.-|.......+..+.
T Consensus 98 ~-~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i~ 144 (174)
T 3qb9_A 98 D-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (174)
T ss_dssp H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122333334455555689999999999999999988877766554
No 56
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=50.51 E-value=92 Score=27.42 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=51.4
Q ss_pred hcCCCCCcccCccccHHH-Hh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHH
Q 023028 54 QASFWTAEEVDLSQDVQH-WE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEM 131 (288)
Q Consensus 54 ~~~fW~p~eid~s~D~~~-w~-~L~~~er~~~~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~ 131 (288)
..+-|++.-|..+.|+.. .. ++. ++.-- +..-.++...+.+|.++..+++-+..|.+|...
T Consensus 129 ~G~pWta~Yv~~~Gdl~aDL~~Nia----------------AE~~A-r~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~ 191 (302)
T 2v8t_A 129 MGEHWNGEYVFTSGNLILDLLHNFF----------------LEVAA-RTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAA 191 (302)
T ss_dssp TSCBCBGGGCCCCSCHHHHHHHHHH----------------HHHHH-HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhcCCCCHHHHHHHHHH----------------HHHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence 457899999988887752 21 221 11111 112246788889999999999999999999999
Q ss_pred HHHHHHHh
Q 023028 132 YSLLLETY 139 (288)
Q Consensus 132 Ys~il~~~ 139 (288)
|...++.+
T Consensus 192 f~~ALe~l 199 (302)
T 2v8t_A 192 YGKALESL 199 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999998
No 57
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=48.52 E-value=1.3e+02 Score=26.00 Aligned_cols=121 Identities=14% Similarity=0.052 Sum_probs=71.1
Q ss_pred CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCHHHHHHH------HHHH-------------
Q 023028 109 IQIPEA-RAFYGFQIAMENIHSEMYSLLLETYIKD-SKEKHRLFNAIENIPCVAQKA------KWAL------------- 167 (288)
Q Consensus 109 ~~~~E~-~~~~~~Q~~~E~iH~e~Ys~il~~~~~~-~~e~~~~~~~~~~~p~l~~k~------~~i~------------- 167 (288)
++.|+. +..+.-.+.+|--|.|..+.++..+..+ +.+..+. ..+|.+..-. .++.
T Consensus 49 ~~~~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a----~~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~ 124 (266)
T 1o9i_A 49 STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDL----KRDPSLATTMAGMDPEHSLVHGLNASLNNPNGA 124 (266)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHH----HHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCC
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhc----ccchhhHhhhcCCChHHHHhcCCCCCccCCCCC
Confidence 345788 8889999999999999999999999653 2112111 1133331111 1221
Q ss_pred ----HHhccchHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 168 ----DWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 168 ----~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
.++..+.++..-+......|.-- -..+.-++.+.. =|++.+++.++..||..|..-....++.+..
T Consensus 125 pWt~~yv~~~Gdl~aDL~~niaaE~~A-r~~Y~rl~~~td---Dp~vkd~L~fLi~RE~~H~~~f~~aLe~l~~ 194 (266)
T 1o9i_A 125 AWNAGYVTSSGNLVADMRFNVVRESEA-RLQVSRLYSMTE---DEGVRDMLKFLLARETQHQLQFMKAQEELEE 194 (266)
T ss_dssp BCBGGGCCCCSCHHHHHHHHHHHHHHH-HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111122333333334455321 112222322222 4999999999999999999999888887754
No 58
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=48.25 E-value=51 Score=25.25 Aligned_cols=59 Identities=17% Similarity=0.014 Sum_probs=43.5
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
+..-+++++..++-+..+|.-|..-....++.+-..|. ...+.+++..+++.|...+..
T Consensus 35 ~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 102 (161)
T 3uoi_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLNR 102 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999977776665543332 134677788888887776653
No 59
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=48.05 E-value=76 Score=22.96 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHHH-HhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 175 SFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 175 ~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
++.+++.+.. =+|+|-+|...+.. -.-|.+..+..-|+.+|-.|+.....+++.
T Consensus 19 d~~rai~aL~~EleAI~~Y~q~A~~------t~D~evk~vl~~iadEEkeH~g~~l~~Lrr 73 (95)
T 1zpy_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRR 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666543 38899888777655 455899999999999999999966655443
No 60
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=47.58 E-value=99 Score=24.16 Aligned_cols=134 Identities=12% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-h--HHHHHHHHHHhhCHHHHHH
Q 023028 86 VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD-S--KEKHRLFNAIENIPCVAQK 162 (288)
Q Consensus 86 ~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~-~--~e~~~~~~~~~~~p~l~~k 162 (288)
+|..-..++.--..... .++..+++|+++..+..-+.+|..|.+.+..++..+.++ + .....++..+ .|.
T Consensus 24 ~L~~A~~~E~~a~~~Y~-~~A~~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~~~~~~~~--~~~---- 96 (175)
T 2fzf_A 24 LLGMAIKAEIGAREFYK-SLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPEL--QPV---- 96 (175)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCC--CCC----
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhh--hhh----
Confidence 44444444443333343 477778899999999999999999999999999887432 1 0000001000 000
Q ss_pred HHHHHHHhccchHHHHHHHHH-HHhh--hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 163 AKWALDWIHSSDSFAERLVGF-ACVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 163 ~~~i~~~~~~~~~~~~~lv~~-~~lE--gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
...+....+.... +.. .-.| ++-||..++-. -.-|.+..++..|.+||..|......++..+.+
T Consensus 97 ----~~~~~~~~~~~~~-L~~ai~~E~~a~~~Y~~~a~~------~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l~~ 163 (175)
T 2fzf_A 97 ----ARELEKVQDIIDL-IRWAMKAEEIAAEFYLKLEEM------VKEEEKKRLMRYLADMERGHYYTLRAEYELLLN 163 (175)
T ss_dssp ----CSCCCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHhccccCCHHHH-HHHHHHHHHHHHHHHHHHHhh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000111112111 212 1223 34444444332 223899999999999999999988877766543
No 61
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=46.09 E-value=1e+02 Score=24.01 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023028 84 SHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139 (288)
Q Consensus 84 ~~~l~~l~~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~ 139 (288)
..++..-..++.-..... ..++..+++|+++..+...+.+|..|.+.+..+++.+
T Consensus 107 ~~~L~~ai~~E~~a~~~Y-~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l 161 (175)
T 2fzf_A 107 IDLIRWAMKAEEIAAEFY-LKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445554433333 3577778889999999999999999999998888876
No 62
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=45.31 E-value=1.2e+02 Score=24.56 Aligned_cols=138 Identities=7% Similarity=-0.088 Sum_probs=84.9
Q ss_pred HccCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHH
Q 023028 106 LNDIQIPEARAFYGFQIA----MENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLV 181 (288)
Q Consensus 106 ~~~~~~~E~~~~~~~Q~~----~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv 181 (288)
.... +++....+..++. .|.-|-+ .+++.++.++++ .....-.|.-+.-.+++.....+ ++...++
T Consensus 63 ~~ka-~~~~~~~~~~~~~~~i~~E~~~h~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~--~~~~~~a 132 (214)
T 2qzc_A 63 SSKG-PIDKVTKILNLVFSSRDKGLETHG---KLYSKLDISRDV----IVKTGYNLINYAYTRHLYYYANL--DWNKFLV 132 (214)
T ss_dssp HTTS-CHHHHHHHHHHHTCC--CHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH--CHHHHHH
T ss_pred HHhC-CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc--CHHHHHH
Confidence 3344 6776666665533 3643333 346788777666 23345567777788888776554 5777777
Q ss_pred HHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHH---hhh-hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 023028 182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQ 257 (288)
Q Consensus 182 ~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~ 257 (288)
+...+|+++...|- .+... |+ .---+||. -+| .-|+.....+++.+ +...+ +.+++..+++.|..
T Consensus 133 Al~pc~~~Y~~ig~----~l~~~---~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~-~~~~f~~a~~~E~~ 201 (214)
T 2qzc_A 133 AWTPCMFGYSIVGD----YVIDS---PN-EVYKTWASFYASTEYKKRIEAILYALDEV--SITED-LLNIFINSVRFEIG 201 (214)
T ss_dssp HHHHHHHHHHHHHH----HHTTC---SC-HHHHHHHHHHHSHHHHHHHHHHHHHHTTS--CCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhC---CC-ChHHHHHHHhCCHHHHHHHHHHHHHHHhC--ccHHH-HHHHHHHHHHHHHH
Confidence 77777877654441 22222 43 12234553 244 45777777666555 33456 99999999999999
Q ss_pred HHHHhcC
Q 023028 258 FVCEALP 264 (288)
Q Consensus 258 ~~~~~~~ 264 (288)
|-+....
T Consensus 202 Fwd~a~~ 208 (214)
T 2qzc_A 202 FWDASLR 208 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
No 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.10 E-value=1.3e+02 Score=24.58 Aligned_cols=61 Identities=8% Similarity=-0.088 Sum_probs=41.6
Q ss_pred HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHHHH-HHHHH
Q 023028 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--------WQKVHHMVHEAVEIE-TQFVC 260 (288)
Q Consensus 200 ~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--------~~~i~e~~~eave~E-~~~~~ 260 (288)
..++.--+++++..++.++.+|..|......++..+-..+. ...+.+.++.+++.| .++..
T Consensus 52 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i~~~p~~~~gst~enL~~a~~gE~~E~t~ 121 (202)
T 1yuz_A 52 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETSD 121 (202)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCccCCCCHHHHHHHHHHhHHHHHHH
Confidence 33555667999999999999999999877777665422211 124566677777777 55543
No 64
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=43.67 E-value=80 Score=24.14 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=44.9
Q ss_pred HHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 202 ~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
.+..-+++++..+.-+..+|..|..-....+..+-..|+ ...+.+++..+++.|...+..
T Consensus 32 ~~~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 100 (161)
T 3gvy_A 32 QEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDARTL 100 (161)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999977777666644332 134678888888888876653
No 65
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.65 E-value=1.3e+02 Score=24.32 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=64.8
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (288)
..+..-.-+.+..++-.|+..|..|+.-+-.++. ++.+. ... ..|.- .+.+ ....+-..
T Consensus 32 ~~a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~-----i~~--~~p~~---------~~~s---~~e~l~~a 90 (191)
T 1lko_A 32 GQAKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLE-----IVA--AFPAG---------IIAD---THANLIAS 90 (191)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCC-----CCC--CCCCC---------CCCC---HHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcc-----ccC--cCCcc---------ccCC---HHHHHHHH
Confidence 3444555688999999999999999987766664 22210 000 00100 0001 11110000
Q ss_pred HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 184 ~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
.--|..-....+.-+.-.++.-....+...++++..+|..|......++..+..
T Consensus 91 l~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~ 144 (191)
T 1lko_A 91 AAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE 144 (191)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111211222223334444555556889999999999999999998888877764
No 66
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=42.15 E-value=1.2e+02 Score=23.77 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------hch----HHHHHHHHHHHHHHHHHHHHH
Q 023028 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK--------RLH----WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 199 ~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~--------e~~----~~~i~e~~~eave~E~~~~~~ 261 (288)
+++.+.| +||++.-+..-+.+|.-|..-....++..-. +|+ ...+.+++..+.++|+.....
T Consensus 28 ~~f~~~~-l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~i~~p~~~~~~~~~~e~le~aL~~Ek~v~~~ 101 (168)
T 3e6s_A 28 IWFDQND-WEGMAAYMLAESAEEREHGLGFVDFANKRNIPIELQAVPAPVSCAEWSSPEDVWQSILELEQANTRS 101 (168)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCGGGTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4667777 8999999999999999999854444332221 222 123678888888888877654
No 67
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=42.15 E-value=55 Score=29.09 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=30.9
Q ss_pred HHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 023028 198 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (288)
Q Consensus 198 ~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (288)
.+++...+ ......|+-|.++|.+|....+++++.+-..
T Consensus 33 ~ySi~~~n--~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~ 71 (317)
T 3hl1_A 33 LYSIKDPT--TVPYRLIQAAVYQEMLHAQLVSNIANAYGYS 71 (317)
T ss_dssp HHHBSCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444333 5788999999999999999999999887644
No 68
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=41.02 E-value=1.2e+02 Score=23.27 Aligned_cols=58 Identities=16% Similarity=-0.040 Sum_probs=41.2
Q ss_pred cCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 204 ~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
.--+++++..+...+.+|.-|..-....+..+-..|. .+.+.+++..+.+.|..++..
T Consensus 34 ~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 100 (159)
T 4am5_A 34 DWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRIGQTVKEVLESDLAAEREARAL 100 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999866555544443331 134677777888888777653
No 69
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=41.01 E-value=79 Score=23.92 Aligned_cols=59 Identities=19% Similarity=0.003 Sum_probs=43.7
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
...-++++...++....+|.-|..-....++.+-..|+ ...+.++++.+++.|...+..
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 100 (158)
T 2y3q_A 33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKN 100 (158)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999987777766543321 134667888888888876653
No 70
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=39.89 E-value=1.1e+02 Score=22.62 Aligned_cols=101 Identities=14% Similarity=-0.060 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhH
Q 023028 111 IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIF 190 (288)
Q Consensus 111 ~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~ 190 (288)
-+....++..|+.+|.-|.+.+...+..+++.|.-. + ...+ ...+.....+..+ -.|. .
T Consensus 41 ~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~--~----~~~~-----------~~~~~~e~l~~~l---~~E~-~ 99 (149)
T 2qqy_A 41 RQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTI--P----LRVK-----------QAEDVREMLEYAR---QSEY-E 99 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC--C----CCCC-----------CCSSHHHHHHHHH---HHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC--C----CCCC-----------CCCCHHHHHHHHH---HHHH-H
Confidence 367889999999999999999999998887654320 0 0000 0001111111111 1121 1
Q ss_pred hHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHH
Q 023028 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (288)
Q Consensus 191 f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (288)
....+.-+...+....-++++..+..+.+||..|.......+
T Consensus 100 ~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l 141 (149)
T 2qqy_A 100 TIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLL 141 (149)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222233344444568899999999999999998766554
No 71
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=39.61 E-value=69 Score=25.09 Aligned_cols=59 Identities=17% Similarity=0.001 Sum_probs=44.0
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~~ 261 (288)
...-+|+++..+..+..+|..|..-....+..+-..|. ...+.+++..+++.|...+..
T Consensus 38 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~al~~E~~~~~~ 105 (179)
T 1nfv_A 38 DDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEA 105 (179)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999977777766543321 124778888888888876653
No 72
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=37.07 E-value=1.7e+02 Score=23.85 Aligned_cols=144 Identities=10% Similarity=-0.109 Sum_probs=86.0
Q ss_pred HHccCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHH
Q 023028 105 FLNDIQIPEARAFYGFQIAM----ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180 (288)
Q Consensus 105 l~~~~~~~E~~~~~~~Q~~~----E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~l 180 (288)
.....++++...++..++.. |.- .+..+++.++.++++ .....-.|....-.+++.....+. ++...+
T Consensus 66 ~~~ka~~~~~~~~l~~~~~~~i~~E~~---lh~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~l 137 (221)
T 2gm8_A 66 AASRAPSVDLMKTALELAYGTVTGEMA---NYEALLKEVGLSLRD----AAEAEPNRVNVSYMAYLKSTCALE-GFYQCM 137 (221)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTHHH---HHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhcC-CHHHHH
Confidence 44456777777666655433 643 333446888777666 233445677777788887655432 466777
Q ss_pred HHHHHhhhhHhHhHHHHHHHHHHcCC-CccHHHHHHHHH---hhh-hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 023028 181 VGFACVEGIFFSGSFCAIFWLKKRGL-MPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE 255 (288)
Q Consensus 181 v~~~~lEgi~f~~~F~~~~~l~~~~~-m~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E 255 (288)
+++..+|.++...|- .+..... .|+ .---+||. -+| .-|+.....++..+ +...+++.+++..+++.|
T Consensus 138 aAl~pc~~~Y~~ig~----~l~~~~~~~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~f~~a~~lE 210 (221)
T 2gm8_A 138 AALLPCFWSYAEIAE----RHGGKLRENPV-HVYKKWASVYLSPEYRGLVERLRAVLDSS--GLSAEELWPYFKEASLYE 210 (221)
T ss_dssp HHHHHHHHHHHHHHH----HHGGGGGGCCC-HHHHHHHHHHHSHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH----HHHhccCCCCC-chHHHHHHHhCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 777777776544332 2222211 133 11124443 344 45666666666555 334578999999999999
Q ss_pred HHHHHHhc
Q 023028 256 TQFVCEAL 263 (288)
Q Consensus 256 ~~~~~~~~ 263 (288)
..|-+...
T Consensus 211 ~~Fwd~a~ 218 (221)
T 2gm8_A 211 LEFWQAAY 218 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 73
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=36.67 E-value=1e+02 Score=23.37 Aligned_cols=58 Identities=10% Similarity=-0.080 Sum_probs=41.1
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~ 260 (288)
+..-+++++..+..+..+|.-|..-....+..+-..|+ ...+.++++.+++.|...+.
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (161)
T 1jgc_A 33 EDWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGPRETLECDLAGEHDALK 99 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999977766655543321 12456777777777776654
No 74
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=36.65 E-value=1.4e+02 Score=22.84 Aligned_cols=110 Identities=11% Similarity=-0.080 Sum_probs=66.3
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 107 ~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
....-+....++-.|+.+|..|++-+...+..+++.|.- ..+. -|. ...+.....++.+ -.
T Consensus 33 ~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~-----~~~~-~~~----------~~~~~~e~l~~~l---~~ 93 (159)
T 4am5_A 33 EDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNL-----QTLD-PLR----------IGQTVKEVLESDL---AA 93 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----SBCC-CCC----------CCSSHHHHHHHHH---HH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-----cccc-ccc----------cchhHHHHHHHHH---HH
Confidence 344556788899999999999999988888888776531 0000 000 0011111111111 11
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
|-- ....+.-+..++....-+.++..+++|..||--|.......+..+.
T Consensus 94 E~~-~~~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~i~ 142 (159)
T 4am5_A 94 ERE-ARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS 142 (159)
T ss_dssp HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1123333344566677899999999999999999988877665543
No 75
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=36.05 E-value=1e+02 Score=23.94 Aligned_cols=58 Identities=17% Similarity=0.012 Sum_probs=42.1
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~e~~~eave~E~~~~~ 260 (288)
...-+|+++..+..+..+|.-|..-....+..+-..|+ ...+.++++.+++.|...+.
T Consensus 35 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~~~~~~~e~l~~al~~E~~~~~ 101 (174)
T 3qb9_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (174)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999977777666543321 13456777788888877665
No 76
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=35.84 E-value=91 Score=24.30 Aligned_cols=72 Identities=8% Similarity=-0.057 Sum_probs=0.0
Q ss_pred hHhHHHHHH--HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHHH
Q 023028 191 FSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH----------WQKVHHMVHEAVEIETQF 258 (288)
Q Consensus 191 f~~~F~~~~--~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~----------~~~i~e~~~eave~E~~~ 258 (288)
+++++.++. ....+--+||++..++..+.+|.-|..-....++.+-..|. ...+.++++.+.+.|+.-
T Consensus 18 l~A~~~Yl~~a~~~~~~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~l~~al~~E~~~ 97 (165)
T 1eum_A 18 LYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLI 97 (165)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 023028 259 VCEA 262 (288)
Q Consensus 259 ~~~~ 262 (288)
+..+
T Consensus 98 ~~~~ 101 (165)
T 1eum_A 98 TQKI 101 (165)
T ss_dssp HHHH
T ss_pred HHHH
No 77
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=35.03 E-value=1.5e+02 Score=22.54 Aligned_cols=109 Identities=9% Similarity=-0.136 Sum_probs=66.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 023028 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVE 187 (288)
Q Consensus 108 ~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lE 187 (288)
...-+....++-.|+.+|.-|++.....+..+++.|.-. .+ +.+. ...+.....+.. .-.|
T Consensus 34 ~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~-----~~---~~~~--------~~~~~~e~l~~~---l~~E 94 (161)
T 3gvy_A 34 DWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQ-----RL---NPLR--------IGQTLRETLDAD---LAAE 94 (161)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS-----CC---CCCC--------CCSSHHHHHHHH---HHHH
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccC-----CC---CCCC--------CCCCHHHHHHHH---HHHH
Confidence 334466788999999999999999999998887655320 00 0000 001111111111 1122
Q ss_pred hhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 188 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 188 gi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
.- ....+.-+..++....-++++..+..|.+||--|..+....+..+.
T Consensus 95 ~~-~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~i~ 142 (161)
T 3gvy_A 95 HD-ARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMG 142 (161)
T ss_dssp HH-HHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223333344566666799999999999999999988877766554
No 78
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=33.83 E-value=83 Score=27.66 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=34.2
Q ss_pred hHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 174 DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 174 ~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
..+..+++++ +.++++.--.+-..+ ...=--|-.........-.|++|....++++..+.
T Consensus 84 r~~~~~~l~~~~~~D~iv~~~l~~~l---~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~ 144 (311)
T 2o1z_A 84 KHFIKHVLAFFAASDGIVLENLASKF---LRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYI 144 (311)
T ss_dssp HHHHHHHHHHHHHC-------CHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH---HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3456666666 567877543321112 11111255556667778999999999999998886
No 79
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=33.73 E-value=89 Score=27.05 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
.+..+++++ +.++++.--.. .-.+...=..|-.........-.|++|....+.++..+..
T Consensus 61 ~~~~~~l~~~~~~D~iv~~~l---~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 121 (286)
T 3olj_A 61 YFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK 121 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466677665 56787754222 1112221224555566677788999999999999998863
No 80
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=33.67 E-value=96 Score=27.78 Aligned_cols=61 Identities=5% Similarity=-0.136 Sum_probs=40.9
Q ss_pred hHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhh-hHHHHHHHHHHHHHh
Q 023028 174 DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG-LHCDFACLLYSLLRK 237 (288)
Q Consensus 174 ~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~-~H~~f~~~l~~~l~~ 237 (288)
..+..+++++ +.++++.--.+-..+.-. =--|..........--|+ +|....+.++..+..
T Consensus 73 r~~~~~vl~f~~~~Dsiv~~~~~~~~~~~---v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~~ 135 (350)
T 4dr0_A 73 QDTYMKVLAGLTLLDTEQGNTGMPIVAEH---VDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAP 135 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHH---SCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3466777776 568887653333222211 123666677778888999 999999999998873
No 81
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=32.96 E-value=1.8e+02 Score=22.79 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------hH--HHHHHHHHHHHHHHHHHHH
Q 023028 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------HW--QKVHHMVHEAVEIETQFVC 260 (288)
Q Consensus 201 l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~~--~~i~e~~~eave~E~~~~~ 260 (288)
+... -++|++..++....+|.-|..-...-++.+-..| +. ..+.++++.+++.|...+.
T Consensus 45 ~~~~-~~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~~~l~~i~~p~~~~~~~~e~le~~l~~E~~v~~ 113 (176)
T 1vlg_A 45 FDAE-GFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQ 113 (176)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3443 4899999999999999999987666665543222 11 3467788888888877665
No 82
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=32.86 E-value=98 Score=26.94 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcc-chHHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023028 157 PCVAQKAKWALDWIHS-SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (288)
Q Consensus 157 p~l~~k~~~i~~~~~~-~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (288)
|--+++.+|- + +.+ ...+..+++++ +.++++.--.+-..+ ...=.-|..........-.|++|....++++..
T Consensus 46 ~ls~D~~dw~-~-Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~t 120 (296)
T 3mjo_A 46 PVSNDIQSWN-K-MTPQEQLATMRVFTGLTLLDTIQGTVGAISL---LPDAETMHEEAVYTNIAFMESVHAKSYSNIFMT 120 (296)
T ss_dssp CGGGGHHHHH-H-SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhccHHHHH-H-CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455553 1 332 23466677765 567776543322212 222223667777888899999999999999998
Q ss_pred HHhh
Q 023028 235 LRKR 238 (288)
Q Consensus 235 l~~e 238 (288)
+...
T Consensus 121 l~~~ 124 (296)
T 3mjo_A 121 LAST 124 (296)
T ss_dssp HSCH
T ss_pred hCCC
Confidence 8753
No 83
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=31.15 E-value=1.9e+02 Score=22.67 Aligned_cols=61 Identities=11% Similarity=-0.005 Sum_probs=41.4
Q ss_pred HHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------hH--HHHHHHHHHHHHHHHHHHHH
Q 023028 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------HW--QKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 200 ~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~~--~~i~e~~~eave~E~~~~~~ 261 (288)
++... -+||+++-++..+.+|.-|..-....++.+-..| .. ..+.+++..+.++|+.-+..
T Consensus 32 ~~~~~-~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~le~aL~~E~~v~~~ 102 (173)
T 1s3q_A 32 YFDSI-GLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTKR 102 (173)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34443 4899999999999999999986655544433222 11 34677777777777766653
No 84
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=30.65 E-value=2e+02 Score=22.64 Aligned_cols=89 Identities=17% Similarity=0.017 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH---------HH
Q 023028 173 SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW---------QK 243 (288)
Q Consensus 173 ~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~---------~~ 243 (288)
++.....|-.....|-...+-.+..-.++...| +++++..+.-...+|.-|..-....++.+-..|+. ..
T Consensus 25 ~~~~~~~LN~~la~E~~a~~~Y~~~a~~~~~~~-~~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~~~~~~~ 103 (182)
T 3fvb_A 25 EPKVIERLNEALFLELGAVNQYWLHYRLLNDWG-YTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLRIGQN 103 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023028 244 VHHMVHEAVEIETQFVCEA 262 (288)
Q Consensus 244 i~e~~~eave~E~~~~~~~ 262 (288)
+.++++.+++.|...+..+
T Consensus 104 ~~e~l~~~l~~E~~~~~~y 122 (182)
T 3fvb_A 104 VKEVLEADLKGEYDARASY 122 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 85
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=30.32 E-value=1.7e+02 Score=21.88 Aligned_cols=108 Identities=10% Similarity=-0.103 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q 023028 109 IQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEG 188 (288)
Q Consensus 109 ~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEg 188 (288)
..-+....++-.++.+|.-|++.+...+..+++.|.-.. +...+. -.+.....+. ..-.|.
T Consensus 35 ~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~-----~~~~~~-----------~~~~~e~l~~---~l~~E~ 95 (158)
T 2y3q_A 35 WGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQD-----LGKLNI-----------GEDVEEMLRS---DLALEL 95 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-----CCCCCC-----------CSSHHHHHHH---HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-----CCcCCC-----------CCCHHHHHHH---HHHHHH
Confidence 344788999999999999999999999988876543210 110000 0011111111 111222
Q ss_pred hHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023028 189 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (288)
Q Consensus 189 i~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (288)
- ....+.-+...+....-+.++..+..+..||.-|.......+..+.
T Consensus 96 ~-~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~ 142 (158)
T 2y3q_A 96 D-GAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122333334454445689999999999999999998887776554
No 86
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=28.87 E-value=1.1e+02 Score=22.69 Aligned_cols=59 Identities=17% Similarity=-0.044 Sum_probs=42.6
Q ss_pred HcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHHHHHHHHHH
Q 023028 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--------WQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 203 ~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--------~~~i~e~~~eave~E~~~~~~ 261 (288)
+..-++++...+..+..+|.-|..-....+..+-..|+ ...+.++++.+++.|...+..
T Consensus 37 ~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 103 (149)
T 2qqy_A 37 SGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQAEDVREMLEYARQSEYETIKR 103 (149)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33346889999999999999999977777665543332 124667888888888876653
No 87
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=26.55 E-value=1e+02 Score=27.18 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=41.1
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (288)
.+..+++++ +.++++.--.+-..+ ...=.-|..........-.|++|....++++..+...
T Consensus 54 ~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~ 115 (319)
T 3n37_A 54 QLTMRVFTGLTLLDTLQNVIGAPSL---MPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQT 115 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 466676665 567776543322212 2222236777778888999999999999999988753
No 88
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=25.66 E-value=1.1e+02 Score=27.18 Aligned_cols=61 Identities=10% Similarity=-0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (288)
.+..+++++ ++++++.--.+-..+ ...=.-|..........-.|++|....++++..+...
T Consensus 64 ~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~ 125 (329)
T 3dhz_A 64 LATMRVFTGLTLLDTIQGTVGAISL---LPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST 125 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHT---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666665 567776543222211 2222236677778888999999999999999988753
No 89
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=25.33 E-value=2.7e+02 Score=22.58 Aligned_cols=139 Identities=13% Similarity=-0.084 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 023028 111 IPEARAFYGFQIAM----ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (288)
Q Consensus 111 ~~E~~~~~~~Q~~~----E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (288)
+++....+..++.. |. ..+..+++.++.++++ .....-.|....-.+++.....+. ++...++++..+
T Consensus 65 ~~~~~~~l~~~~~~~i~~E~---~lh~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~laAl~pc 136 (226)
T 1udd_A 65 EYPLMAELIELARDEVTVEV---ENYVKLLKELDLTLED----AIKTEPTLVNSAYMDFMLATAYKG-NIIEGLTALLPC 136 (226)
T ss_dssp CTTHHHHHHHHHHHHTTHHH---HHHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCHHH----HhhCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 56555555544333 64 3334456888777666 223455677777788887655432 466777777777
Q ss_pred hhhHhHhHHHHHHHHHHcCCCccHHHHHHHHH---hhh-hhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHH
Q 023028 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKR-LHWQKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 187 Egi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e-~~~~~i~e~~~eave~E~~~~~~ 261 (288)
|+++...|-...-.. .+ .|+ .---+||. -+| .-|+.....++..+ + ...+++.+++..+++.|..|-+.
T Consensus 137 ~~~Y~~ig~~l~~~~--~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~~f~~a~~lE~~Fwd~ 210 (226)
T 1udd_A 137 FWSYAEIAEYHKDKL--RD-NPI-KIYREWGKVYLSNEYLNLVGRLRKIIDSS--GHSGYDRLRRIFITGSKFELAFWEM 210 (226)
T ss_dssp HHHHHHHHHHTHHHH--TT-CSC-HHHHHHHHGGGSHHHHHHHHHHHHHHHTS--CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CC-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655443221110 12 233 22234553 233 45666666666655 2 34578999999999999999887
Q ss_pred hc
Q 023028 262 AL 263 (288)
Q Consensus 262 ~~ 263 (288)
..
T Consensus 211 a~ 212 (226)
T 1udd_A 211 AW 212 (226)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 90
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=21.85 E-value=1.4e+02 Score=26.40 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=40.0
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
.+..+++++ ..++++.--.+-..+. ..=--|..........-.|++|+...++++..+..
T Consensus 76 ~~~~~~l~~~~~~D~iv~~~~~~~l~---~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~ 136 (346)
T 1syy_A 76 RVILLNLGFFSTAESLVGNNIVLAIF---KHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGL 136 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456666666 5678875433322121 21123667777788899999999999999988864
No 91
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=21.75 E-value=2.6e+02 Score=21.81 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhh--------c-hH--HHHHHHHHHHHHHHHHHHHH
Q 023028 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKR--------L-HW--QKVHHMVHEAVEIETQFVCE 261 (288)
Q Consensus 206 ~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e--------~-~~--~~i~e~~~eave~E~~~~~~ 261 (288)
-+||+++-+..-+.+|.-|..-...-+..+-.. | .. ..+.+++..+.++|+..+..
T Consensus 43 ~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~~ 109 (174)
T 2v2p_A 43 ALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQA 109 (174)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998655554443322 2 11 34788999999999877754
No 92
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=20.35 E-value=1.9e+02 Score=25.63 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHHHHHHHH-HHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 023028 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (288)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (288)
.+..+++++ ++++++.--.. -.+...=--|..........-.|++|....++++..+..
T Consensus 76 ~~~~~~l~~~~~~D~~v~~~l----~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl~~ 135 (346)
T 2rcc_A 76 EAFKKIIGLLAFLDSVQTDYS----MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVP 135 (346)
T ss_dssp HHHHHHHHHHHHTTTTCCCHH----HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhH----HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456666666 57788755332 222222122677777888899999999999999988853
No 93
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=20.28 E-value=2.9e+02 Score=20.99 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=30.4
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLET 138 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~ 138 (288)
.++..+++|+++..+...+.+|..|......+++.
T Consensus 121 ~~a~~~~d~~~k~l~~~la~eE~~H~~~l~~~~~~ 155 (157)
T 1vjx_A 121 ELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE 155 (157)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777899999999999999999999988777664
No 94
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}
Probab=20.06 E-value=22 Score=32.07 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHH
Q 023028 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161 (288)
Q Consensus 104 ~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~ 161 (288)
.++..+.+|+++..+...+-+|-.|...+..++..+ +|.+.+..-+...+..++..
T Consensus 40 q~A~~~~d~~~K~vl~~ia~EEk~H~~~f~~ll~~l--~~~~~~~~~~g~~ev~e~~~ 95 (345)
T 2e0z_A 40 QMARYSEDENVRKILLDVAREEKAHVGEFMALLLNL--DPEQVTELKGGFEEVKELTG 95 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHh
Confidence 467778999999999999999999999999999988 45543334344444444433
Done!