Query 023029
Match_columns 288
No_of_seqs 231 out of 1255
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.1E-32 2.4E-37 229.8 11.4 155 37-201 2-159 (159)
2 KOG1471 Phosphatidylinositol t 100.0 1E-31 2.2E-36 249.4 15.2 164 37-204 90-259 (317)
3 smart00516 SEC14 Domain in hom 100.0 2.2E-30 4.7E-35 215.8 15.1 155 36-202 3-157 (158)
4 KOG1470 Phosphatidylinositol t 100.0 4.5E-30 9.7E-35 234.8 16.3 181 4-204 64-245 (324)
5 cd00170 SEC14 Sec14p-like lipi 99.9 4.8E-26 1E-30 187.2 13.6 141 46-195 13-155 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 9.1E-15 2E-19 121.3 5.7 141 44-204 4-146 (149)
7 KOG4406 CDC42 Rho GTPase-activ 98.5 1.4E-06 3.1E-11 82.2 10.9 143 32-190 69-215 (467)
8 CHL00198 accA acetyl-CoA carbo 41.1 2.8E+02 0.006 26.2 9.9 21 6-26 36-56 (322)
9 PF14394 DUF4423: Domain of un 41.1 67 0.0014 27.2 5.4 120 21-147 45-166 (171)
10 PF03641 Lysine_decarbox: Poss 29.7 1.3E+02 0.0027 24.2 5.1 62 122-185 65-133 (133)
11 PF11339 DUF3141: Protein of u 29.5 2.5E+02 0.0054 28.5 7.8 80 52-152 99-178 (581)
12 TIGR02886 spore_II_AA anti-sig 25.2 2.7E+02 0.0059 20.6 6.1 51 104-158 40-90 (106)
13 TIGR00513 accA acetyl-CoA carb 24.7 5.9E+02 0.013 23.9 10.1 20 7-26 34-53 (316)
14 PTZ00351 adenylosuccinate synt 24.3 42 0.00091 34.3 1.5 63 217-280 46-109 (710)
15 PF04378 RsmJ: Ribosomal RNA s 23.8 51 0.0011 29.8 1.9 29 140-168 206-234 (245)
16 COG2961 ComJ Protein involved 23.2 58 0.0013 29.7 2.1 27 140-166 237-263 (279)
17 TIGR02364 dha_pts dihydroxyace 22.3 1.2E+02 0.0026 24.3 3.6 50 102-161 60-109 (125)
18 KOG1534 Putative transcription 21.6 1.1E+02 0.0023 27.6 3.3 104 78-188 75-192 (273)
19 PF14419 SPOUT_MTase_2: AF2226 20.2 1.5E+02 0.0033 25.1 3.8 41 9-59 47-99 (173)
No 1
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=100.00 E-value=1.1e-32 Score=229.82 Aligned_cols=155 Identities=28% Similarity=0.476 Sum_probs=127.9
Q ss_pred HHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcC
Q 023029 37 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS 116 (288)
Q Consensus 37 ~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~ 116 (288)
.++++++.+++|+|++||||+++++|++|..+.+.++++++.++++|..++.. ++ +.+++++++|+|++|++++
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~~-----~~~~~~~~~iiD~~g~~~~ 75 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRM-PE-----GGQVEGIVVIIDLSGFSLS 75 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTH-HH-----TSHHH-EEEEEE-TT--HH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhh-cc-----cccceeEEEEEeCCCceEe
Confidence 46678889999999999999999999999988889999999999999987532 11 3567899999999999999
Q ss_pred CCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCC-CCHhHHHhcCCCCCcccc
Q 023029 117 ALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQG-NGRDELLKIMDYASLPHF 193 (288)
Q Consensus 117 ~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~-~~~~~L~k~Id~~~LP~~ 193 (288)
++.. +++++.++++++++||||++++||||+|++|+++|++++|||+++|++||+++++ ++.++|.++||+++||.+
T Consensus 76 ~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~ 155 (159)
T PF00650_consen 76 NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVE 155 (159)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGG
T ss_pred ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchh
Confidence 8753 6889999999999999999999999999999999999999999999999999975 455799999999999999
Q ss_pred cccCCCCc
Q 023029 194 CRKEGSGS 201 (288)
Q Consensus 194 yGGe~GGt 201 (288)
| ||+
T Consensus 156 ~----GG~ 159 (159)
T PF00650_consen 156 Y----GGT 159 (159)
T ss_dssp G----TSS
T ss_pred c----CCC
Confidence 9 664
No 2
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.97 E-value=1e-31 Score=249.40 Aligned_cols=164 Identities=34% Similarity=0.487 Sum_probs=149.2
Q ss_pred HHHhcCceeEeccCCCCCeEEEEecCCCCCC----CCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCC
Q 023029 37 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG 112 (288)
Q Consensus 37 ~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~----~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~G 112 (288)
.+.++++.+++|.|++|+||++.+.|..|.+ .....+++++++.-.|...+.+++.+.+..+++++|++.|+||+|
T Consensus 90 ~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G 169 (317)
T KOG1471|consen 90 ELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKG 169 (317)
T ss_pred hhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCC
Confidence 3444789999999999999999999999866 468889999999999999887777777666789999999999999
Q ss_pred CCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCCc
Q 023029 113 LKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 190 (288)
Q Consensus 113 ls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~L 190 (288)
++++|++. ...+++++.++++||||+++++||||+|++|+++|++|||||+++|++||+++++++.++|+++|+++.|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~L 249 (317)
T KOG1471|consen 170 VSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVL 249 (317)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhC
Confidence 99999964 5889999999999999999999999999999999999999999999999997777899999999999999
Q ss_pred ccccccCCCCcccc
Q 023029 191 PHFCRKEGSGSSRH 204 (288)
Q Consensus 191 P~~yGGe~GGt~~~ 204 (288)
|.+| ||++.+
T Consensus 250 P~~y----GG~~~~ 259 (317)
T KOG1471|consen 250 PEEY----GGTCGD 259 (317)
T ss_pred cccc----CCCccc
Confidence 9999 677665
No 3
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=2.2e-30 Score=215.75 Aligned_cols=155 Identities=26% Similarity=0.443 Sum_probs=139.8
Q ss_pred HHHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCc
Q 023029 36 RAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKL 115 (288)
Q Consensus 36 ~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~ 115 (288)
+.++.++++++ |+|++||||+++++++++.+..+.+++++++++.+|...+. .....+++++++|+|++|+++
T Consensus 3 ~~~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~i~D~~~~~~ 75 (158)
T smart00516 3 ELGKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQR------EKKTGGIEGFTVIFDLKGLSM 75 (158)
T ss_pred hhHHHhcCCCC-CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHH------HhcCCCeeeEEEEEECCCCCc
Confidence 34567778887 99999999999999999988899999999999999987642 123456899999999999999
Q ss_pred CCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCCcccccc
Q 023029 116 SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCR 195 (288)
Q Consensus 116 ~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yG 195 (288)
+++. ++.++.++++++.+||++++++||||+|++|+++|+++++|++++|++||+++++++.+.|.++||+++||.+|
T Consensus 76 ~~~~-~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~- 153 (158)
T smart00516 76 SNPD-LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEEL- 153 (158)
T ss_pred cccc-HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhh-
Confidence 9964 68899999999999999999999999999999999999999999999999999976789999999999999999
Q ss_pred cCCCCcc
Q 023029 196 KEGSGSS 202 (288)
Q Consensus 196 Ge~GGt~ 202 (288)
||++
T Consensus 154 ---GG~~ 157 (158)
T smart00516 154 ---GGTL 157 (158)
T ss_pred ---CCCC
Confidence 7765
No 4
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.97 E-value=4.5e-30 Score=234.84 Aligned_cols=181 Identities=21% Similarity=0.315 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCCCCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 023029 4 QEEIKQFQTLMEDLDDS-LKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMN 82 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-l~~~~~~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~ 82 (288)
+.|+|+|...+-|+-+. ++ .++...++-..++.+. +++.|+|++||||+|+++...-....+.+.+.|+.++++
T Consensus 64 ~kA~kml~~tL~WR~~~~~~----~~~~~~Ev~~e~~tGK-~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~m 138 (324)
T KOG1470|consen 64 KKASKMLSNTLKWRRSFGPE----EVIEADEVAAELETGK-AYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTL 138 (324)
T ss_pred HHHHHHHHHHhHHHHhcCCc----cccCHHHHHHHhhcCc-EEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 56777776666555333 33 3688888999999997 999999999999999988877666779999999999999
Q ss_pred HHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhccc
Q 023029 83 EYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 162 (288)
Q Consensus 83 E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL 162 (288)
|.... .+.++++++++++|++|+||++.+ +++.+.+++++|+||||||+.++++|+||+|..+|+++||||
T Consensus 139 E~Ai~--------~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpfl 209 (324)
T KOG1470|consen 139 ENAIL--------FLPPGQEQFVWLFDLTGFSMSNPD-IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFL 209 (324)
T ss_pred HHHHH--------hCCCCcceEEEEEecccCcccCCC-cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhcc
Confidence 98644 234667889999999999999876 789999999999999999999999999999999999999999
Q ss_pred chhhhcceEEeCCCCHhHHHhcCCCCCcccccccCCCCcccc
Q 023029 163 QERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRH 204 (288)
Q Consensus 163 ~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yGGe~GGt~~~ 204 (288)
++.|++||+|..+ ...|.+|||+++||..| ||+...
T Consensus 210 Dp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~----GG~~~~ 245 (324)
T KOG1470|consen 210 DPKTASKVKFVEP--KDDLSEYFDESQLPSLF----GGKLLF 245 (324)
T ss_pred ChhhhceeEEecC--hhHHHhhCCccccchhh----CCCccc
Confidence 9999999999974 56699999999999999 775443
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.94 E-value=4.8e-26 Score=187.24 Aligned_cols=141 Identities=32% Similarity=0.519 Sum_probs=122.8
Q ss_pred EeccCCCCCeEEEEecCCCCCCCC-CHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCC-hHHH
Q 023029 46 VSGYSKEGLPVIAVGVGLSTHDKA-SVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN-QIKL 123 (288)
Q Consensus 46 ~~G~Dk~GrPV~i~~~g~~d~~~~-~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~-~~~~ 123 (288)
..|.|++||||++.++++.+.... ..++++++.++.+|...+.. ....+++++|+|++|++++++. .++.
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~i~D~~~~~~~~~~~~~~~ 84 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED--------DEQVEGFVVIIDLKGLSLSHLLPDPSL 84 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhh--------hhcccceEEEEECCCCChhccchhHHH
Confidence 344699999999999997665543 44889999999999876521 1122689999999999999885 4688
Q ss_pred HHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCCcccccc
Q 023029 124 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCR 195 (288)
Q Consensus 124 ~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yG 195 (288)
+++++++++.+||++++++||||+|++|+++|+++++|+++++++||++++++ .++|.++||+++||.+||
T Consensus 85 ~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~G 155 (157)
T cd00170 85 LKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYG 155 (157)
T ss_pred HHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhC
Confidence 99999999999999999999999999999999999999999999999999854 899999999999999993
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.53 E-value=9.1e-15 Score=121.27 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=93.3
Q ss_pred eeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCChHHH
Q 023029 44 VGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKL 123 (288)
Q Consensus 44 ~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~~~~ 123 (288)
....|+|++||||+++...++ +.....+.++.+.+..+. ++. .-.+.++|+|++|++..+-.....
T Consensus 4 ~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~-------~~~------~~~~f~vVid~~~~~~~~~~~~~~ 69 (149)
T PF13716_consen 4 FYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLS-------EEV------VDKPFSVVIDHTGFSRSSEPSLSW 69 (149)
T ss_dssp -EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH--------TTT------TTS-EEEEEE-TT--GGG---HHH
T ss_pred EEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhh-------HHh------cCCCEEEEEEcCCCccccCCchHH
Confidence 356789999999999998887 433344444444333221 110 124599999999998866545678
Q ss_pred HHHHHHhhhccCccccceEEEEcCChhHHHHH-HHHhcccchhh-hcceEEeCCCCHhHHHhcCCCCCcccccccCCCCc
Q 023029 124 MTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERT-RRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGS 201 (288)
Q Consensus 124 ~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w-~lvkpfL~e~T-r~KI~~~~~~~~~~L~k~Id~~~LP~~yGGe~GGt 201 (288)
++++.+++...|+..++++||||+.++++.++ .+.+++.+.+. ..||.++.+ .++|.++||+++||..+ ||+
T Consensus 70 l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~l----p~~ 143 (149)
T PF13716_consen 70 LKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESL----PGV 143 (149)
T ss_dssp HHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG----------HH
T ss_pred HHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccC----CCE
Confidence 89999999999999999999999999999999 56677888888 899999874 89999999999999999 788
Q ss_pred ccc
Q 023029 202 SRH 204 (288)
Q Consensus 202 ~~~ 204 (288)
+.+
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 765
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=1.4e-06 Score=82.24 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=109.8
Q ss_pred HHHHHHHHh--cCceeEec-cCCCCCeEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEE
Q 023029 32 AELYRAVRD--SQLVGVSG-YSKEGLPVIAVGVGLSTHDK-ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKV 107 (288)
Q Consensus 32 ~~~~~~lr~--~~~~~~~G-~Dk~GrPV~i~~~g~~d~~~-~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~I 107 (288)
.++|+.+|. .......+ +|+.||+|+++..-++...+ ..--.+++..++..++..+ +-.+.+
T Consensus 69 d~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve--------------~DYt~v 134 (467)
T KOG4406|consen 69 DPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVE--------------NDYTLV 134 (467)
T ss_pred ccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHh--------------ccceee
Confidence 447777776 44344444 69999999999999986542 2222367777777776533 125777
Q ss_pred EeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCC
Q 023029 108 LDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDY 187 (288)
Q Consensus 108 vDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~ 187 (288)
+=-.|+...+-..++++.....-+..+|=-.++.+|+|..-|+..++|+++|||++.+..+||+-++ ..++|.++|.-
T Consensus 135 Yfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n--~lseL~~~l~l 212 (467)
T KOG4406|consen 135 YFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN--SLSELFEALKL 212 (467)
T ss_pred ehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee--hHHHHHHhhhh
Confidence 7778887777666677777777788889999999999999999999999999999999999999986 58999998765
Q ss_pred CCc
Q 023029 188 ASL 190 (288)
Q Consensus 188 ~~L 190 (288)
++|
T Consensus 213 ~rL 215 (467)
T KOG4406|consen 213 NRL 215 (467)
T ss_pred hhh
Confidence 543
No 8
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=41.14 E-value=2.8e+02 Score=26.18 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 023029 6 EIKQFQTLMEDLDDSLKETFK 26 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~ 26 (288)
-.+++++|.+++++..++++.
T Consensus 36 ~~~~i~~l~~~~~~~~~~~~~ 56 (322)
T CHL00198 36 INNKLKSFQRKLRILKKEIFY 56 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777655
No 9
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=41.06 E-value=67 Score=27.23 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHhhCCCCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCc
Q 023029 21 LKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 100 (288)
Q Consensus 21 l~~~~~~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~ 100 (288)
|.+.+..+|+.+++.++|..-.-.|+...+.+|+-+.-...=. .....+....-++|.++++.....+ + ......+.
T Consensus 45 iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~-~~~~~~~~avr~~h~q~~~lA~~al-~-~~p~~~R~ 121 (171)
T PF14394_consen 45 IAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLT-TSSEIPSEAVRSYHKQMLELAQEAL-D-RVPPEERD 121 (171)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecceee-CCCCCcHHHHHHHHHHHHHHHHHHH-H-hCCccccc
Confidence 4444447898899988888777788888888877555332111 1224556667778888888876543 1 11122345
Q ss_pred cccEEEEEeCCCCCcCCCCh-H-HHHHHHHHhhhccCccccceEEEEcC
Q 023029 101 IGTSLKVLDMTGLKLSALNQ-I-KLMTVITTIDDLNYPEKTETYYIVNA 147 (288)
Q Consensus 101 i~~~v~IvDl~Gls~~~l~~-~-~~~~~i~~i~~~~YPerl~~i~iVNa 147 (288)
++++|+=+|-+++ ..+-. + ++-+++..+.+.. ....++|-+|.
T Consensus 122 ~s~~T~~vs~~~~--~ki~~~i~~fRk~i~~i~~~~--~~~~~Vy~lN~ 166 (171)
T PF14394_consen 122 FSGLTMSVSREDY--EKIKKEIREFRKKIIAIAEED--KEPDRVYQLNI 166 (171)
T ss_pred eeeeEEEeCHHHH--HHHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEE
Confidence 5666654443332 01100 2 5667788888874 33555666664
No 10
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=29.68 E-value=1.3e+02 Score=24.18 Aligned_cols=62 Identities=6% Similarity=0.114 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhccCccc-cc-eEEEEcCChhHHHHHHHH-----hcccchhhhcceEEeCCCCHhHHHhcC
Q 023029 122 KLMTVITTIDDLNYPEK-TE-TYYIVNAPYIFSACWKVV-----KPLLQERTRRKMQVLQGNGRDELLKIM 185 (288)
Q Consensus 122 ~~~~~i~~i~~~~YPer-l~-~i~iVNaP~~f~~~w~lv-----kpfL~e~Tr~KI~~~~~~~~~~L~k~I 185 (288)
..+-.++.++...+=.. -+ -++++|..-++.-+++.+ ..|++++..+.+.+.. ..+++.++|
T Consensus 65 GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d--~~~e~~~~i 133 (133)
T PF03641_consen 65 GTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD--DPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES--SHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHhhC
Confidence 34444444444222222 33 699999887888888876 5799999999999986 377776653
No 11
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=29.53 E-value=2.5e+02 Score=28.49 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCChHHHHHHHHHhh
Q 023029 52 EGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTID 131 (288)
Q Consensus 52 ~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~~~~~~~i~~i~ 131 (288)
.|+||+++.+-.......+.++..+....+.|.... .++. ...-++|-+|+| -..+.++
T Consensus 99 ~GHPvYFV~F~p~P~pgQTl~DV~~ae~~Fv~~V~~--------~hp~-~~kp~liGnCQg------------GWa~~ml 157 (581)
T PF11339_consen 99 AGHPVYFVGFFPEPEPGQTLEDVMRAEAAFVEEVAE--------RHPD-APKPNLIGNCQG------------GWAAMML 157 (581)
T ss_pred cCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHHHH--------hCCC-CCCceEEeccHH------------HHHHHHH
Confidence 377777777666544456788888776655555432 1211 124567766655 2234556
Q ss_pred hccCccccceEEEEcCChhHH
Q 023029 132 DLNYPEKTETYYIVNAPYIFS 152 (288)
Q Consensus 132 ~~~YPerl~~i~iVNaP~~f~ 152 (288)
...+|+..+.+.+--+|--+.
T Consensus 158 AA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 158 AALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred HhcCcCccCceeecCCCcccc
Confidence 778999999999888886443
No 12
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=25.24 E-value=2.7e+02 Score=20.64 Aligned_cols=51 Identities=4% Similarity=0.042 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHH
Q 023029 104 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 158 (288)
Q Consensus 104 ~v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lv 158 (288)
-.+|+||++++.-....+..+..+.+-+. .+=.+++++|++.-+.-++...
T Consensus 40 ~~vilDls~v~~iDssgi~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 90 (106)
T TIGR02886 40 KHLILNLKNVTFMDSSGLGVILGRYKKIK----NEGGEVIVCNVSPAVKRLFELS 90 (106)
T ss_pred CEEEEECCCCcEecchHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHh
Confidence 37899999998877655555544444433 2447899999987777666543
No 13
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=24.72 E-value=5.9e+02 Score=23.93 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 023029 7 IKQFQTLMEDLDDSLKETFK 26 (288)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~ 26 (288)
.+++++|.++.++..+++++
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~ 53 (316)
T TIGR00513 34 SEEIERLEKRSVELTKKIFS 53 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45667777777666666554
No 14
>PTZ00351 adenylosuccinate synthetase; Provisional
Probab=24.28 E-value=42 Score=34.28 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=41.1
Q ss_pred CCccchhHHHHHHhhhhcc-cceeeccCCceEEeccCCCCccchhhHHhhhhhhhcccCCCcccc
Q 023029 217 DHAFHQRLYNYIKQQAVLT-ESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINS 280 (288)
Q Consensus 217 ~~~~p~~~y~~l~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (288)
-.|+|++.| |+++.++.+ +...+.+.-|.+|++++-|.|-..=.++--+.-+.-.+.|.++.|
T Consensus 46 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (710)
T PTZ00351 46 HDPVPQEAY-YVKDEADACHQQQAPFREPSVEVEVEIIDDEPPRGSQKPLSVAPHTANANNSSGS 109 (710)
T ss_pred CCCcchhhh-hcccccchHhhccCCcCCCceEEEEEEccCCCCccccCCcccCcccccccCCccc
Confidence 458999998 788888766 445788999999999986665544444333333444444444433
No 15
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=23.77 E-value=51 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=21.7
Q ss_pred ceEEEEcCChhHHHHHHHHhcccchhhhc
Q 023029 140 ETYYIVNAPYIFSACWKVVKPLLQERTRR 168 (288)
Q Consensus 140 ~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~ 168 (288)
..++|||+||-+....+-+-|+|.+....
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 67999999999998888888887765443
No 16
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=23.21 E-value=58 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=23.0
Q ss_pred ceEEEEcCChhHHHHHHHHhcccchhh
Q 023029 140 ETYYIVNAPYIFSACWKVVKPLLQERT 166 (288)
Q Consensus 140 ~~i~iVNaP~~f~~~w~lvkpfL~e~T 166 (288)
..++|||+||-+..-...+-|||....
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 579999999999999998888887643
No 17
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=22.29 E-value=1.2e+02 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred ccEEEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcc
Q 023029 102 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 161 (288)
Q Consensus 102 ~~~v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpf 161 (288)
++++++.|+ |-+..+.. .. +.+++ ++..+++..+|+|.+..++-..+..-
T Consensus 60 dgVlvl~DL-Ggs~~n~e---~a---~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNAE---MA---VELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhHHH---HH---HHHhc---cccccEEEEechhHHHHHHHHHHHHc
Confidence 579999999 76554421 11 22222 46668999999999999988877654
No 18
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=21.57 E-value=1.1e+02 Score=27.59 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCC--CcCCCChHHHHHHHHHhhhc-cCccccceEEE------EcCC
Q 023029 78 HIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL--KLSALNQIKLMTVITTIDDL-NYPEKTETYYI------VNAP 148 (288)
Q Consensus 78 ~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gl--s~~~l~~~~~~~~i~~i~~~-~YPerl~~i~i------VNaP 148 (288)
.++++||...-+ .......| ..+.--+|+||-|= =..|+ .+++++++-++. +| ++..+|+ |++-
T Consensus 75 Lv~cmEyl~~Nl-dwL~~~~G-d~eddylifDcPGQIELytH~---pVm~~iv~hl~~~~F--~~c~Vylldsqf~vD~~ 147 (273)
T KOG1534|consen 75 LVYCMEYLLENL-DWLEEEIG-DVEDDYLIFDCPGQIELYTHL---PVMPQIVEHLKQWNF--NVCVVYLLDSQFLVDST 147 (273)
T ss_pred chhHHHHHHHHH-HHHHhhcc-CccCCEEEEeCCCeeEEeecC---hhHHHHHHHHhcccC--ceeEEEEeccchhhhHH
Confidence 467888876532 22222233 34566789999884 22444 466666666666 33 4444554 5555
Q ss_pred hhHHHHHHHHhcccchh-----hhcceEEeCCCCHhHHHhcCCCC
Q 023029 149 YIFSACWKVVKPLLQER-----TRRKMQVLQGNGRDELLKIMDYA 188 (288)
Q Consensus 149 ~~f~~~w~lvkpfL~e~-----Tr~KI~~~~~~~~~~L~k~Id~~ 188 (288)
.+|+.+++.++..+.=. ..+|.-.+++..+++|.++.+++
T Consensus 148 KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 148 KFISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNPD 192 (273)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCc
Confidence 66777777666554332 23344444333456666666544
No 19
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=20.20 E-value=1.5e+02 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.617 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhC------------CCCCcHHHHHHHHhcCceeEeccCCCCCeEEEE
Q 023029 9 QFQTLMEDLDDSLKETFK------------KPILPAELYRAVRDSQLVGVSGYSKEGLPVIAV 59 (288)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~------------~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~ 59 (288)
+|...+.-|.+.....++ -|+.-.|+|+.+|+ +.|+|+++.
T Consensus 47 eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V~DlYQ~vRd----------R~~~~lIvt 99 (173)
T PF14419_consen 47 ELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYVQDLYQVVRD----------RKGEPLIVT 99 (173)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeHHHHHHHHHh----------cCCCeEEEE
Confidence 456666666666555544 78888999988865 688999984
Done!