Query 023029
Match_columns 288
No_of_seqs 231 out of 1255
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.6E-42 5.6E-47 330.4 20.6 238 4-255 50-299 (403)
2 1aua_A Phosphatidylinositol tr 100.0 1.6E-37 5.6E-42 284.2 17.6 182 36-223 98-285 (296)
3 3q8g_A CRAL-TRIO domain-contai 100.0 6.7E-38 2.3E-42 290.6 13.7 185 35-225 112-314 (320)
4 3hx3_A Retinaldehyde-binding p 100.0 5.6E-36 1.9E-40 277.1 14.6 164 28-204 129-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 6.7E-35 2.3E-39 261.6 16.4 183 4-197 48-232 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.4 1.6E-12 5.3E-17 116.6 8.8 138 37-190 6-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.2 3.8E-11 1.3E-15 109.3 8.6 137 37-189 25-162 (290)
8 1sbo_A Putative anti-sigma fac 24.5 1.7E+02 0.0059 20.3 5.9 50 105-158 46-95 (110)
9 2ka5_A Putative anti-sigma fac 23.7 1.5E+02 0.0052 21.8 5.6 51 105-159 54-104 (125)
10 2kln_A Probable sulphate-trans 21.7 2.1E+02 0.0071 21.1 6.1 50 104-157 49-98 (130)
11 2oo3_A Protein involved in cat 21.4 40 0.0014 29.8 2.0 32 135-166 233-264 (283)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.6e-42 Score=330.39 Aligned_cols=238 Identities=23% Similarity=0.328 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCCCCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCC----CCCHHHHHHHH
Q 023029 4 QEEIKQFQTLMEDLDDS-LKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSH 78 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-l~~~~~~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~----~~~~~~~lk~~ 78 (288)
+.|.+.|+..+.|+.+. +...++ -..+ +.++++++++++|+|++||||+++++|++|++ ..+.+++++++
T Consensus 50 ~~A~~~l~~~l~wR~~~~~~~i~~-~~~~----~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~ 124 (403)
T 1olm_A 50 QKSEAMLRKHVEFRKQKDIDNIIS-WQPP----EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK 124 (403)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGGG-SCCC----HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccc-cCCH----HHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHH
Confidence 45556665555555432 222232 1112 35677788999999999999999999999976 47899999999
Q ss_pred HHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHH
Q 023029 79 IQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWK 156 (288)
Q Consensus 79 i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~ 156 (288)
++++|..++. ++.++++.|++++++++|+||+|++++|+++ +++++.+++++|+|||||++++||||+|++|+++|+
T Consensus 125 ~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~ 203 (403)
T 1olm_A 125 MRECELLLQE-CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYN 203 (403)
T ss_dssp HHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHH
T ss_pred HHHHHHHHHH-HHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHH
Confidence 9999998764 4566777888899999999999999999985 478899999999999999999999999999999999
Q ss_pred HHhcccchhhhcceEEeCCCCHhHHHhcCCCCCcccccccCCCCcccccCCCCCCCcccC---CCccchhHHHHHHhhhh
Q 023029 157 VVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSL---DHAFHQRLYNYIKQQAV 233 (288)
Q Consensus 157 lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yGGe~GGt~~~~~~~~~~~c~~~---~~~~p~~~y~~l~~~~~ 233 (288)
++||||+++|++||+|+++++.++|.++||+++||++| ||++.+ |++++.|.+. ||++|+++| +.+..+
T Consensus 204 ~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~ 275 (403)
T 1olm_A 204 LIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVK 275 (403)
T ss_dssp HHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCC
T ss_pred HHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcc
Confidence 99999999999999999877788999999999999999 999998 8999999976 899999999 655422
Q ss_pred -cc-cceeeccCCceEEeccCCCC
Q 023029 234 -LT-ESVVPIRQGSFHVDFPEPDP 255 (288)
Q Consensus 234 -~~-~~~~~~~~~~~~v~~~~~~~ 255 (288)
.. ++++|.+|++++|++++.++
T Consensus 276 ~~~~~~~~V~~g~~~~v~~~v~~~ 299 (403)
T 1olm_A 276 QQYEHSVQISRGSSHQVEYEILFP 299 (403)
T ss_dssp CCCSEEEEECTTCEEEEEEEECST
T ss_pred cccceEEEEcCCCEEEEEEEEcCC
Confidence 23 56999999999999998643
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.6e-37 Score=284.23 Aligned_cols=182 Identities=23% Similarity=0.339 Sum_probs=159.1
Q ss_pred HHHHhcCceeEeccCCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCC
Q 023029 36 RAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMT 111 (288)
Q Consensus 36 ~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~----~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~ 111 (288)
..++++++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|...+..++.+++..|.+++++++|+|++
T Consensus 98 ~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 98 PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 567788899999999999999999999998653 5889999999999999877656677777888899999999999
Q ss_pred CCCcCCCCh-HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCCc
Q 023029 112 GLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 190 (288)
Q Consensus 112 Gls~~~l~~-~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~L 190 (288)
|+|++|+++ +.+++.++.++++|||||++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus 178 g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 178 GISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence 999999876 4788999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred ccccccCCCCcccccCCCCCCCcccC-CCccchh
Q 023029 191 PHFCRKEGSGSSRHIGNGTTENCFSL-DHAFHQR 223 (288)
Q Consensus 191 P~~yGGe~GGt~~~~~~~~~~~c~~~-~~~~p~~ 223 (288)
|++| ||++++ ++.+..|... -||-.+.
T Consensus 258 P~~y----GG~~~~--~~~~~g~~~~~~~~w~~~ 285 (296)
T 1aua_A 258 PVKF----GGKSEV--DESKGGLYLSDIGPWRDP 285 (296)
T ss_dssp BGGG----TSCBCC--CGGGCCSTTCCCSGGGCG
T ss_pred cHHh----CCCCCC--CCCCCCceeCCCCCCCCh
Confidence 9999 888887 4433446543 3444333
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6.7e-38 Score=290.59 Aligned_cols=185 Identities=23% Similarity=0.354 Sum_probs=163.0
Q ss_pred HHHHHhcCceeEeccCCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeC
Q 023029 35 YRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDM 110 (288)
Q Consensus 35 ~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~----~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl 110 (288)
...++++++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|...+..++++++..|.+++++++|+||
T Consensus 112 ~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~ 191 (320)
T 3q8g_A 112 RIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDL 191 (320)
T ss_dssp HHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEEC
Confidence 3467889999999999999999999999999764 478899999999999987666677888889999999999999
Q ss_pred CCCCcCCCCh-HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCC
Q 023029 111 TGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYAS 189 (288)
Q Consensus 111 ~Gls~~~l~~-~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~ 189 (288)
+|+|++++++ +.+++.++.++|++||||++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++
T Consensus 192 ~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~ 271 (320)
T 3q8g_A 192 KGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271 (320)
T ss_dssp TTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhh
Confidence 9999999875 478899999999999999999999999999999999999999999999999998777899999999999
Q ss_pred cccccccCCCCcccccCCCCCCCccc-------------CCCccchhHH
Q 023029 190 LPHFCRKEGSGSSRHIGNGTTENCFS-------------LDHAFHQRLY 225 (288)
Q Consensus 190 LP~~yGGe~GGt~~~~~~~~~~~c~~-------------~~~~~p~~~y 225 (288)
||++| ||++++ ++..+.|.. ++|..|+++|
T Consensus 272 LP~~y----GG~~~~--~~~~ggc~~~~~gpw~~~~~~~~~~~~~~~~~ 314 (320)
T 3q8g_A 272 LPVKY----GGTSVL--HNPNDKFYYSDIGPWRDPRYIGPEGEIPNIFG 314 (320)
T ss_dssp SBGGG----TSCBCC--SSTTSCGGGBCBSGGGCTTTCCTTCCCCCTTG
T ss_pred CChhh----CCCCCC--CCCCCCeecCCCCCCCChhhcCCCCccCcccc
Confidence 99999 888887 444455742 2556666665
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.6e-36 Score=277.15 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=148.0
Q ss_pred CCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEE
Q 023029 28 PILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKV 107 (288)
Q Consensus 28 pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~I 107 (288)
.+.++++...++.+++.+++|+|++||||+++++|++|+++.+.+++++++++++|..++. .+.+++|+++|
T Consensus 129 ~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~I 200 (316)
T 3hx3_A 129 SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN--------EETQINGFCII 200 (316)
T ss_dssp TCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEE
T ss_pred CCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc--------ccCCcceEEEE
Confidence 3567778888999999999999999999999999999999999999999999999987531 12357899999
Q ss_pred EeCCCCCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcC
Q 023029 108 LDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIM 185 (288)
Q Consensus 108 vDl~Gls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~I 185 (288)
+|++|+|++|+++ ...++.++.+++++||+|++++||||+|++|.++|+++||||+++|++||+|++++ .++|.++|
T Consensus 201 iD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~-~~~L~~~I 279 (316)
T 3hx3_A 201 ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD-LSGFYQEI 279 (316)
T ss_dssp EECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC-CHHHHHHS
T ss_pred EECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC-HHHHHhhC
Confidence 9999999999854 47899999999999999999999999999999999999999999999999999755 47999999
Q ss_pred CCCCcccccccCCCCcccc
Q 023029 186 DYASLPHFCRKEGSGSSRH 204 (288)
Q Consensus 186 d~~~LP~~yGGe~GGt~~~ 204 (288)
|+++||++| ||++.+
T Consensus 280 ~~~~LP~ey----GG~~~~ 294 (316)
T 3hx3_A 280 DENILPSDF----GGTLPK 294 (316)
T ss_dssp CGGGSBGGG----TSSBCC
T ss_pred CHhhCcHhh----CCCCCC
Confidence 999999999 888775
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=6.7e-35 Score=261.60 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 023029 4 QEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNE 83 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E 83 (288)
+.|.+.|+..+.|+.+. ...+ ..+.+.++...++.++..+++|+|++||||+++++|++|++..+..+++++.++++|
T Consensus 48 ~~A~~~l~~~l~wR~~~-~~i~-~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E 125 (262)
T 1r5l_A 48 DLAWRLLKNYYKWRAEC-PEIS-ADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSE 125 (262)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHH-SCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hHhh-hcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHH
Confidence 45666666666655432 1112 234556677888999988999999999999999999999988899999999999999
Q ss_pred HHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcc
Q 023029 84 YRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 161 (288)
Q Consensus 84 ~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpf 161 (288)
..++. .. .++.|+++|+|++|+|++|+++ +++++.+++++++|||||++++||||+|++|+++|+++|||
T Consensus 126 ~~~~~----~~----~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpf 197 (262)
T 1r5l_A 126 LIVQE----VE----TQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF 197 (262)
T ss_dssp HHTTS----HH----HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGG
T ss_pred HHHhC----hh----hcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHh
Confidence 76431 11 1357899999999999999864 47899999999999999999999999999999999999999
Q ss_pred cchhhhcceEEeCCCCHhHHHhcCCCCCcccccccC
Q 023029 162 LQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKE 197 (288)
Q Consensus 162 L~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yGGe 197 (288)
|+++|++||+|+++++.++|.++|| ++||++|||+
T Consensus 198 l~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~ 232 (262)
T 1r5l_A 198 LTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGE 232 (262)
T ss_dssp SCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCS
T ss_pred cCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCC
Confidence 9999999999998778899999999 9999999433
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.35 E-value=1.6e-12 Score=116.57 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=112.7
Q ss_pred HHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcC
Q 023029 37 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS 116 (288)
Q Consensus 37 ~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~ 116 (288)
.|.+....+-.|.|++||||+++.+.+++......+.++.+.+..++... -+...+|+|++|++..
T Consensus 6 ~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~ 71 (256)
T 3pg7_A 6 ALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPS 71 (256)
T ss_dssp THHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGG
T ss_pred HHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcc
Confidence 34455556777999999999999999998777777777766655554221 1458999999999998
Q ss_pred CCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHH-HhcccchhhhcceEEeCCCCHhHHHhcCCCCCc
Q 023029 117 ALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV-VKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 190 (288)
Q Consensus 117 ~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~l-vkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~L 190 (288)
+....+.++.+.+++...|...++++||+|++++|...|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 72 n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 72 NRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 88778999999999999999999999999999999977665 466777788899999974 8899999987655
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=109.31 Aligned_cols=137 Identities=11% Similarity=0.025 Sum_probs=103.7
Q ss_pred HHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcC
Q 023029 37 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS 116 (288)
Q Consensus 37 ~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~ 116 (288)
.|......+-.|.|++||||+++.+++++......+.++-+.+..++... -....+|+|++|++..
T Consensus 25 ~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~ 90 (290)
T 3peg_A 25 ALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPS 90 (290)
T ss_dssp CGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGG
T ss_pred hhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCcc
Confidence 34455556666899999999999999998877777777766555544221 1358999999999998
Q ss_pred CCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHH-HHHhcccchhhhcceEEeCCCCHhHHHhcCCCCC
Q 023029 117 ALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDELLKIMDYAS 189 (288)
Q Consensus 117 ~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w-~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~ 189 (288)
+-...++++.+.+++...|++.++++||+|++++|...+ ...++|.+.+..+|+.++++ ...|..++++++
T Consensus 91 n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~ 162 (290)
T 3peg_A 91 NRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQ 162 (290)
T ss_dssp GCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC---------
T ss_pred CCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHH
Confidence 877788999999999999999999999999999999855 57788888888999999864 345888887763
No 8
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=24.54 E-value=1.7e+02 Score=20.32 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=34.2
Q ss_pred EEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHH
Q 023029 105 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 158 (288)
Q Consensus 105 v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lv 158 (288)
.+|+|+++++.-...-+..+..+.+-++. +=.++.++|++.-+.-++.+.
T Consensus 46 ~vvlDls~v~~iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSYMDSAGLGTLVVILKDAKI----NGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCCBCHHHHHHHHHHHHHHHH----TTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEEccHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHh
Confidence 56999999987665445555555554443 347789999988777666654
No 9
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.70 E-value=1.5e+02 Score=21.83 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=35.9
Q ss_pred EEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHh
Q 023029 105 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 159 (288)
Q Consensus 105 v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvk 159 (288)
.+|+||++++.-...-+..+..+.+.++ ++=.++.++|++.-+.-++.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 6899999998776554555555554444 33478899999988777776543
No 10
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.71 E-value=2.1e+02 Score=21.05 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCcCCCChHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHH
Q 023029 104 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 157 (288)
Q Consensus 104 ~v~IvDl~Gls~~~l~~~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~l 157 (288)
-.+|+||++++.-....+..+..+.+-+. .+=.+++++|++.-+.-++..
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 98 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRA 98 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 47899999998877665556665555544 345778999988766555554
No 11
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=21.43 E-value=40 Score=29.81 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.0
Q ss_pred CccccceEEEEcCChhHHHHHHHHhcccchhh
Q 023029 135 YPEKTETYYIVNAPYIFSACWKVVKPLLQERT 166 (288)
Q Consensus 135 YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~T 166 (288)
....=..++|||+||-+....+-+-|+|.+..
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 34444779999999999998888888877643
Done!