BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023030
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 31/301 (10%)
Query: 9 GIDVGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC--QGEYV 66
+ V P MNL+G +GN L+ +N NS+ +FAY + L+ + ++ S + +C Q +
Sbjct: 160 AVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCN 219
Query: 67 NVDPSNGLCIADLENITECI--SRVNHAQIYEPSCRGPFISPRRKLFNWNSSVLEEDSLD 124
D + C+ +L+ + + S +N +Y P G P + ++ V+++
Sbjct: 220 FYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGG---VPSHFRYEKDTVVVQDLGNI 276
Query: 125 FLSSPTQPA------ASGTWCRFH----NYVYSYIWANDKTVQRAIGVQEGTVKYWVRCN 174
F P + SG R N + + N+ V++A+ + E + W CN
Sbjct: 277 FTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPE-QLPQWDMCN 335
Query: 175 --QSLSYTKDVSS-SLAYHRNLIKKGYQVLIYSGDVDMKVPYVATEAWIKSLNLTIETGW 231
+L Y + S + Y + L + YQ+L+Y+GDVDM ++ E ++ SLN +E
Sbjct: 336 FLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQR 395
Query: 232 QPWFVE-----GQVAGYWYRYKEKNNYHLTFATVKGAGHTAPEYKPKECLGMIDRWFACH 286
+PW V+ Q+AG+ + H+ F T+KGAGH P KP M R+
Sbjct: 396 RPWLVKYGDSGEQIAGFVKEFS-----HIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
Query: 287 P 287
P
Sbjct: 451 P 451
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 146 YSYIWANDKTVQRAIGVQ-EGTVKY-WVRCNQSLS--YTKDVSSSLAYHRNLIKKGYQVL 201
YS + N + VQ A+ G + Y W C+ +++ + S L +R LI G ++
Sbjct: 11 YSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIW 70
Query: 202 IYSGDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEGQVAGYWYRYKEKNNYHLTFATVK 261
++SGD D VP AT I +L L T W PW+ + +V G+ YK LT +V+
Sbjct: 71 VFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-----LTLVSVR 125
Query: 262 GAGHTAPEYKPKECLGMIDRWFACHPL 288
GAGH P ++P++ L + + P+
Sbjct: 126 GAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 146 YSYIWANDKTVQRAIGVQ-EGTVKY-WVRCNQSLS--YTKDVSSSLAYHRNLIKKGYQVL 201
YS + N + VQ A+ G + Y W C+ +++ + S L +R LI G ++
Sbjct: 9 YSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIW 68
Query: 202 IYSGDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEGQVAGYWYRYKEKNNYHLTFATVK 261
++SGD D VP AT I +L L T W PW+ + +V G+ YK LT +V+
Sbjct: 69 VFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-----LTLVSVR 123
Query: 262 GAGHTAPEYKPKECLGMIDRWFACHPL 288
GAGH P ++P++ L + + P+
Sbjct: 124 GAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 146 YSYIWANDKTVQRAIGVQ-EGTVKY-WVRCNQSLS--YTKDVSSSLAYHRNLIKKGYQVL 201
YS + N + VQ A+ G + Y W C+ +++ + S L +R LI G ++
Sbjct: 9 YSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIW 68
Query: 202 IYSGDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEGQVAGYWYRYKEKNNYHLTFATVK 261
++SGD D VP AT I +L L T W PW+ + +V G+ YK LT +V+
Sbjct: 69 VFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-----LTLVSVR 123
Query: 262 GAGHTAPEYKPKECLGMIDRWFACHPL 288
GAGH P ++P++ L + + P+
Sbjct: 124 GAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 146 YSYIWANDKTVQRAIGVQ-EGTVKY-WVRCNQSLS--YTKDVSSSLAYHRNLIKKGYQVL 201
YS + N + VQ A+ G + Y W C+ +++ + S L +R LI G ++
Sbjct: 9 YSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIW 68
Query: 202 IYSGDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEGQVAGYWYRYKEKNNYHLTFATVK 261
++SGD D VP AT I +L L T W PW+ + +V G+ YK LT +V+
Sbjct: 69 VFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-----LTLVSVR 123
Query: 262 GAGHTAPEYKPKECLGMIDRWFACHPL 288
GAGH P ++P++ L + + P+
Sbjct: 124 GAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 150 WANDKTVQRAIGVQEGTVKYWVRCN--QSLSYTKDVSS-SLAYHRNLIKKGYQVLIYSGD 206
+ N+ V++A+ + E + W CN +L Y + S + Y + L + YQ+L+Y+GD
Sbjct: 14 YLNNPYVRKALNIPE-QLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGD 72
Query: 207 VDMKVPYVATEAWIKSLNLTIETGWQPWFVE-----GQVAGYWYRYKEKNNYHLTFATVK 261
VDM ++ E ++ SLN +E +PW V+ Q+AG+ + H+ F T+K
Sbjct: 73 VDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFS-----HIAFLTIK 127
Query: 262 GAGHTAPEYKPKECLGMIDRWFACHP 287
GAGH P KP M R+ P
Sbjct: 128 GAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 152 NDKTVQRAIGVQ-EGTVKY-WVRCNQSL--SYTKDVSSSLAYHRNLIKKGYQVLIYSGDV 207
N VQ A+ G V+Y W C+ ++ + + L +R LI+ G +V +YSGD
Sbjct: 17 NLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSGDT 76
Query: 208 DMKVPYVATEAWIKSLNLTIETGWQPWFV---EGQVAGYWYRYKEKNNYHLTFATVKGAG 264
D VP +T + +L L ++T W PW++ E +V G+ +Y+ LT+ TV+GAG
Sbjct: 77 DSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYE-----GLTYVTVRGAG 131
Query: 265 HTAPEYKPKECLGMIDRWFACHPL 288
H P ++P + + ++ P+
Sbjct: 132 HLVPVHRPAQAFLLFKQFLKGEPM 155
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 12 VGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC--QGEYVNVD 69
V P MNL+G +GN L+ +N NS+ +FAY + L+ + ++ S + +C Q + D
Sbjct: 165 VMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYD 224
Query: 70 PSNGLCIADLENITECI--SRVNHAQIYEPSCRG 101
+ C+ +L+ + + S +N +Y P G
Sbjct: 225 NKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGG 258
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 150 WANDKTVQRAIGVQEGTVKYWVRCNQSLSYTKDVSSS--LAYHR---NLIKKGYQVLIYS 204
+ N V+ A+G + V ++ CN ++ + YH +L+ + +L+Y+
Sbjct: 278 YLNQDYVKEAVGAE---VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYA 334
Query: 205 GDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEG-------QVAGYWYRYKEKNNYHLTF 257
GD D ++ +AW L + + V +VAG YK H T+
Sbjct: 335 GDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-----HFTY 389
Query: 258 ATVKGAGHTAPEYKPKECLGMIDRW 282
V GH P P+ L M++ W
Sbjct: 390 LRVFNGGHMVPFDVPENALSMVNEW 414
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 150 WANDKTVQRAIGVQEGTVKYWVRCNQSLSYTKDVSSS--LAYHR---NLIKKGYQVLIYS 204
+ N V+ A+G + V ++ CN ++ + YH +L+ + +L+Y+
Sbjct: 278 YLNQDYVKEAVGAE---VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYA 334
Query: 205 GDVDMKVPYVATEAWIKSLNLTIETGWQPWFVEG-------QVAGYWYRYKEKNNYHLTF 257
GD D ++ +AW L + + V +VAG YK H T+
Sbjct: 335 GDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-----HFTY 389
Query: 258 ATVKGAGHTAPEYKPKECLGMIDRW 282
V GH P P+ L M++ W
Sbjct: 390 LRVFNGGHMVPFDVPENALSMVNEW 414
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 3 VQHISDGIDVGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC- 61
V +S + P +NLKG+++GN L D + F + + ++S + Y K C
Sbjct: 159 VPELSQLVHRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACL 218
Query: 62 QGEYVNVDPSNGLCIADLENITECISRVNHAQIYEPSC 99
+++ P+ C A + T ++ +Y P C
Sbjct: 219 HDSFIHPSPA---CDAATDVATAEQGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 3 VQHISDGIDVGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC- 61
V +S + P +NLKG+++GN L D + F + + ++S + Y K C
Sbjct: 160 VPELSQLVHRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACL 219
Query: 62 QGEYVNVDPSNGLCIADLENITECISRVNHAQIYEPSC 99
+++ P+ C A + T ++ +Y P C
Sbjct: 220 HDSFIHPSPA---CDAATDVATAEQGNIDMYSLYTPVC 254
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 3 VQHISDGIDVGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC- 61
V +S + P +NLKG+++GN L D + F + + ++S + Y K C
Sbjct: 164 VPELSQLVHRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACL 223
Query: 62 QGEYVNVDPSNGLCIADLENITECISRVNHAQIYEPSC 99
+++ P+ C A + T ++ +Y P C
Sbjct: 224 HDSFIHPSPA---CDAATDVATAEQGNIDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 3 VQHISDGIDVGHRPRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNC- 61
V +S + P +NLKG+++GN L D + F + + ++S + Y K C
Sbjct: 164 VPELSQLVHRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACL 223
Query: 62 QGEYVNVDPSNGLCIADLENITECISRVNHAQIYEPSC 99
+++ P+ C A + T ++ +Y P C
Sbjct: 224 HDSFIHPSPA---CDAATDVATAEQGNIDMYSLYTPVC 258
>pdb|3OSS|D Chain D, The Crystal Structure Of Enterotoxigenic Escherichia Coli
Gspc-Gspd Complex From The Type Ii Secretion System
Length = 181
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 47 ALISHEIYESAKRNCQGEYVNVDPSNGLCIAD----LENITECISRVNHA 92
A I ++ +SA G VN DPSN + + +E +TE I RV+HA
Sbjct: 135 APILRQMIDSA---GSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA 181
>pdb|3EZJ|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Secretin
Gspd From Etec Determined With The Assistance Of A
Nanobody
pdb|3EZJ|C Chain C, Crystal Structure Of The N-Terminal Domain Of The Secretin
Gspd From Etec Determined With The Assistance Of A
Nanobody
pdb|3EZJ|E Chain E, Crystal Structure Of The N-Terminal Domain Of The Secretin
Gspd From Etec Determined With The Assistance Of A
Nanobody
pdb|3EZJ|G Chain G, Crystal Structure Of The N-Terminal Domain Of The Secretin
Gspd From Etec Determined With The Assistance Of A
Nanobody
Length = 241
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 47 ALISHEIYESAKRNCQGEYVNVDPSNGLCIAD----LENITECISRVNHA 92
A I ++ +SA G VN DPSN + + +E +TE I RV+HA
Sbjct: 123 APILRQMIDSA---GSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA 169
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 16 PRMNLKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNCQG-EYVNVDPSNGL 74
P +N +G L+ + LT+ E+ + + + LIS E +S + C G +++ P
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPE--- 233
Query: 75 CIADLENITECISRVNHAQIYEPSC-RGPFISPRRKLF 111
C +N IY P+C R P SP ++ F
Sbjct: 234 CTEVWNKALAEQGNINPYTIYTPTCDREP--SPYQRRF 269
>pdb|3S12|A Chain A, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain Yu562 Crystal Form 1
pdb|3S13|A Chain A, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain Yu562 Crystal Form 2
Length = 336
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 20 LKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNCQGEYVNVDPSNGLC---- 75
+ G+LLGNP+ D N VP ++Y I E A P+N LC
Sbjct: 70 VAGWLLGNPMCDEFIN---VPEWSY--------IVEKAS-----------PANDLCYPGD 107
Query: 76 IADLENITECISRVNH 91
D E + +SR+NH
Sbjct: 108 FNDYEELKHLLSRINH 123
>pdb|2FK0|A Chain A, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|C Chain C, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|E Chain E, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|G Chain G, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|I Chain I, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|K Chain K, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|M Chain M, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|O Chain O, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|Q Chain Q, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|3GBM|A Chain A, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|C Chain C, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|4FQI|A Chain A, Crystal Structure Of Fab Cr9114 In Complex With A H5n1
Influenza Virus Hemagglutinin
Length = 334
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 20 LKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNCQGEYVNVDPSNGLC---- 75
+ G+LLGNP+ D N VP ++Y I E A +P N LC
Sbjct: 61 VAGWLLGNPMCDEFIN---VPEWSY--------IVEKA-----------NPVNDLCYPGD 98
Query: 76 IADLENITECISRVNH 91
D E + +SR+NH
Sbjct: 99 FNDYEELKHLLSRINH 114
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 140 RFHNYVYSYIWANDKTVQRAI 160
+FH Y Y IW KT+QRA+
Sbjct: 312 KFHGYAYDGIWVIAKTLQRAM 332
>pdb|2IBX|A Chain A, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|C Chain C, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|E Chain E, Influenza Virus (Vn1194) H5 Ha
Length = 340
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 20 LKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNCQGEYVNVDPSNGLC---- 75
+ G+LLGNP+ D N VP ++Y I E A +P N LC
Sbjct: 73 VAGWLLGNPMCDEFIN---VPEWSY--------IVEKA-----------NPVNDLCYPGD 110
Query: 76 IADLENITECISRVNH 91
D E + +SR+NH
Sbjct: 111 FNDYEELKHLLSRINH 126
>pdb|3FKU|A Chain A, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|C Chain C, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|E Chain E, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|G Chain G, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|I Chain I, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|K Chain K, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
Length = 338
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 20 LKGYLLGNPLTDSTENQNSVPHFAYLNALISHEIYESAKRNCQGEYVNVDPSNGLC---- 75
+ G+LLGNP+ D N VP ++Y I E A +P N LC
Sbjct: 65 VAGWLLGNPMCDEFIN---VPEWSY--------IVEKA-----------NPVNDLCYPGD 102
Query: 76 IADLENITECISRVNH 91
D E + +SR+NH
Sbjct: 103 FNDYEELKHLLSRINH 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,526,599
Number of Sequences: 62578
Number of extensions: 399616
Number of successful extensions: 827
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 62
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)