BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023031
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
           The Arp2 Subunit
 pdb|3DWL|I Chain I, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
           The Arp2 Subunit
          Length = 317

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 26/287 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSM--- 56

Query: 61  XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                 +   + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 57  ----KCYPELVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVG 272
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K  
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKAS 276


>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX
 pdb|1TYQ|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
           Calcium
 pdb|1U2V|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
           Calcium
 pdb|2P9I|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp And Crosslinked With Gluteraldehyde
 pdb|2P9K|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Atp And Crosslinked With Glutaraldehyde
 pdb|2P9L|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX
 pdb|2P9N|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9P|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9S|D Chain D, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
           AtpMG2+
 pdb|2P9U|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Amp-Pnp And Calcium
 pdb|3DXK|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0944636
 pdb|3DXM|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0993548
 pdb|3RSE|D Chain D, Structural And Biochemical Characterization Of Two Binding
           Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
           COMPLEX
 pdb|3UKR|D Chain D, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-666
 pdb|3UKU|D Chain D, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
 pdb|3ULE|D Chain D, Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-869 And Atp
          Length = 300

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     NP+       
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHIS----NPNGDKTKVM 56

Query: 58  XXXXXXETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                    F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 57  VSISLK---FYKELQAHGADELLKRVYGS---YLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257


>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
          Abundant (Lea) Protein At2g46140.1
          Length = 174

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 3  LLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPH 50
          LL     F  E L N         +VD+  V  D V YH +V++KNP+
Sbjct: 27 LLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPY 74


>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
           (kininase I) Catalytic Domain
          Length = 439

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 97  FNLTLKLNLSKLPPNEE-------NKHALLVKIASVREVVLGAPLRVVLKHLASKTVA 147
           F +TL+L+  K PP EE       NK AL+  +  V + + G  L     +LA+  ++
Sbjct: 284 FEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAVIS 341


>pdb|3ACB|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
           Phosphoribosyltransferase From Thermus Thermophilus Hb8
 pdb|3ACC|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
           Phosphoribosyltransferase With Gmp From Thermus
           Thermophilus Hb8
 pdb|3ACD|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
           Phosphoribosyltransferase With Imp From Thermus
           Thermophilus Hb8
          Length = 181

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 182 NDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVI 241
            D +DT L  S+L +++EAR+ A +  A L    S   +E   VP         ++ F I
Sbjct: 102 EDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVE---VPIH-------YLGFEI 151

Query: 242 FPRHVEGKKLDRTVWN 257
              +V G  LDR  ++
Sbjct: 152 EDAYVYGYGLDRAQFD 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,404,625
Number of Sequences: 62578
Number of extensions: 266444
Number of successful extensions: 562
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)