BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023031
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium
discoideum GN=arcB PE=1 SV=1
Length = 293
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 160/293 (54%), Gaps = 29/293 (9%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
MLLL++H+R L + +++ + + + + +FD V+++VQ T + +++SVSL
Sbjct: 1 MLLLETHNRILYDEVISHFEGDRRVNNI---FADFDGVKFNVQ-TSDDKSSLMVSVSLHA 56
Query: 61 PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
L G +K+ YG+++Q P G+++TL + S NK L
Sbjct: 57 AADL------LKNGGSALLKSVYGDMLQA--KPEGGYDVTLVIQSS----FSGNKEELAK 104
Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
K++ ++ ++ AP +V + + +K + +++A+ +R E+F+L PQ + V V+F +
Sbjct: 105 KVSLLKRHLVAAPFLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIA 161
Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPS-ETLSANAGFVT 238
F D+ D +L+ FLQ FV+ R+T ++N P +S PPLELKGV AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 219
Query: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLIN--RSILSSLSQTL 287
FV+FP H+ KK + + TF Y+ YH+K G++ R+ + SL Q L
Sbjct: 220 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVL 270
>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2
OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1
Length = 301
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATE---VDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M++L+ ++R ++E L + N + + V+ + +FD V Y + + ++LS+S
Sbjct: 1 MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYKLSNPDGDRTKIILSIS 60
Query: 58 LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
L + GA + ++ YG + P GFN+TL+ NL+ LP + +
Sbjct: 61 LK------FYTELQQHGADDLLRRVYGG--HMRSTPEQGFNVTLEYNLADLPADTTD--- 109
Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
LV+ AS + A V K+ + + + + +R E+ ++ +A++VTV+F
Sbjct: 110 -LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVIF 166
Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAGF 236
F D+ D ++ FLQEF E R+ + AP ++S PPLELK +P + N G+
Sbjct: 167 STVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGY 224
Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
+TFV+FPRH K D T+ + +F Y+ YH+K
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKC 259
>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1
Length = 317
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 26/287 (9%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
ML L ++ F+ E L R + + + +D +FD V +H+ T + +L+S+S+
Sbjct: 1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58
Query: 61 PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
P + +G ++ +K YG V P G+N ++ ++L +LP +E K L +
Sbjct: 59 YPE------LVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
I+ ++ VL AP + L LA K + +L+A+ +R +E+ L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
P+ ++VTVVF +F + D + FLQEFV+ARR + AP ++S PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVG 272
+ GFVTFV+F RH + + + ++ F + +H+K
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKAS 276
>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii
GN=ARPC2 PE=2 SV=1
Length = 300
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
++TFV+FPRH D T+ + TF Y+ YH+K
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257
>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens
GN=ARPC2 PE=1 SV=1
Length = 300
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
++TFV+FPRH D T+ + TF Y+ YH+K
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257
>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2
PE=1 SV=1
Length = 300
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---YLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
++TFV+FPRH D T+ + TF Y+ YH+K
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257
>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus
GN=Arpc2 PE=1 SV=1
Length = 300
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
++TFV+FPRH D T+ + TF Y+ YH+K
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKC 257
>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus
GN=Arpc2 PE=1 SV=3
Length = 300
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ + V++S+S
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPEPGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
++TFV+FPRH D T+ + TF Y+ YH+K
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKC 257
>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles
gambiae GN=Arc-p34 PE=3 SV=2
Length = 304
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 21/276 (7%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E L + +N +KA +D +FD V +H+ + V S+S
Sbjct: 1 MILLEINNRIVEETLTVKFKNAIAGNKAESIDVTVADFDGVLFHISNINGDKTKVRTSIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ +L P DG+N+++ ++L +P EN
Sbjct: 61 LK-------FYKQLQEHGADELLKREYGD---LLVAPEDGYNVSVLVDLENIP---ENWE 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+ KI ++ + + + + + +R E+ ++ + ++VTVV
Sbjct: 108 ETVRKIGLLKRNCFASVFEKYFDFQSQGEGEGEGQKRAVINYRNDETMYVEAKPDRVTVV 167
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D VL F+QE E RR + + AP ++S PPLEL + + N G
Sbjct: 168 FSTIFRDEDDVVLGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTGAR-VGENIG 224
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
+VTFV+FPRH + D T+ + F Y+ YH+K
Sbjct: 225 YVTFVLFPRHTAKETRDNTINLIHMFRDYLHYHIKC 260
>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila
melanogaster GN=Arc-p34 PE=2 SV=2
Length = 301
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 24/276 (8%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
M+LL+ ++R + E LL + +N K +D +FD V YH+ + V +S+S
Sbjct: 1 MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60
Query: 58 LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
L F L GA E +K YG+ +L +G+N+++ +NL ++P E+
Sbjct: 61 LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIP---EDCE 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+ +I ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 QIAKRIGLLKRNCFAS---VFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D ++ F+QE E RR + + AP ++S PPLEL + + N G
Sbjct: 165 FSTIFRDEDDVIIGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTDAR-VGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
+VTFV+FPRH + D T+ + F Y+ YH+K
Sbjct: 222 YVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKC 257
>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1
SV=1
Length = 342
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 30/296 (10%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKAT--EVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSL 58
ML LQ + + + L ++ + K + +D +FD YH+ T ++ I+LLSV
Sbjct: 1 MLHLQPQNLLIQKTLNEAIEALRKGSPLTMDRIVSDFDYTTYHISNTAEDKSILLLSVKT 60
Query: 59 P--VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
V E G L A + V I G++ TL++ L++L
Sbjct: 61 KAWVSVSECQLDGSLTLLKFLADHYSSLGGVTIPSEVEPGYDYTLQITLAELVQES---- 116
Query: 117 ALLVKIASVREVVLGAPLRVVLKHL----------------ASKTVASDIDQLLALVHRP 160
+++++ ++ ++L P + + + A+ + L + +R
Sbjct: 117 --ILQLSVLKTIILSFPFELAISKFIELSQQQPAPVEAEITGGEVAANGDNTLFTIKYRD 174
Query: 161 KESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEAR-RTAGLNNAPLCMWSSSPP 219
+E+ F+ P ++VT++F F D D + FLQEFV+AR R + +AP ++S PP
Sbjct: 175 EENIFIKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPP 234
Query: 220 LELKGV--PSETLSANAGFVTFVIFPRHVEGKKLD-RTVWNLSTFHAYVSYHVKVG 272
LELK + P + + F+TFV+FPRH + K+L ++ L+ F Y YH+K
Sbjct: 235 LELKRLYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCS 290
>sp|B8GC73|RUVX_CHLAD Putative Holliday junction resolvase OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=Cagg_0094 PE=3 SV=1
Length = 142
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 117 ALLVKIASVREVVLGAPLRVVLKHL-ASKTVASDIDQLLALVHRPKESF------FLIPQ 169
A LV VR VV+G PL + +H + + +D L A+++ P E F Q
Sbjct: 47 ARLVAERGVRRVVVGLPLTMRGEHGPQAAAIQRFVDALAAVLNCPVEMFDERLTSVAAEQ 106
Query: 170 AEKVTVVFPMRFNDSIDTVLATSFLQEFVEARR 202
+ V P + + ID V A+ LQ++++ARR
Sbjct: 107 MLRNLGVKPAKIKEQIDQVAASIILQDYLDARR 139
>sp|O04533|LRK52_ARATH Putative L-type lectin-domain containing receptor kinase V.2
OS=Arabidopsis thaliana GN=LECRK52 PE=3 SV=1
Length = 656
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 17 NRVQNVDKATEVDYH-WVEFDDVRYHVQVTM-----KNPHIVLLSVSLPVPP--PETIFI 68
R+ N+D A+ W+E+++ + VTM P I LLS+ + P E ++I
Sbjct: 169 GRLVNLDIASGKPIQVWIEYNNSTKQLDVTMHSIKISKPKIPLLSMRKDLSPYLHEYMYI 228
Query: 69 G----GLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLP--PNEENKHALLVKI 122
G G P + + ++ N + D +NLS+LP P+E+ + +L KI
Sbjct: 229 GFTSVGSPTSSHYILGWSFNNKGAVSD-----------INLSRLPKVPDEDQERSLSSKI 277
Query: 123 ASVREVVLGAPLRVVL 138
++ + G L +VL
Sbjct: 278 LAISLSISGVTLVIVL 293
>sp|Q5N492|DAPAT_SYNP6 LL-diaminopimelate aminotransferase OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapL PE=3 SV=1
Length = 411
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 136 VVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQ 195
V+ H + D L+ L + +F +EKV +++ N+ V + +LQ
Sbjct: 140 VMAGHTGDANDRGEYDGLVYLPISAENNFTAEIPSEKVDLIYLCFPNNPTGAVASREYLQ 199
Query: 196 EFVEARRTAG---LNNAPLCMWSSSPPL-----ELKG-----VPSETLSANAGF----VT 238
+V+ R G L +A + + P + E+ G + + S NAGF
Sbjct: 200 AWVDYARANGAIILFDAAYEAFITDPAIPHSIFEIPGARDCAIEFRSFSKNAGFTGTRCA 259
Query: 239 FVIFPRHVEGKKLDRT------VWN--LSTFHAYVSYHVKVG 272
F + P+ ++GK D + +WN ST VSY V+ G
Sbjct: 260 FTVVPKGLKGKAADGSEVELWGLWNRRQSTKFNGVSYIVQRG 301
>sp|Q31PY6|DAPAT_SYNE7 LL-diaminopimelate aminotransferase OS=Synechococcus elongatus
(strain PCC 7942) GN=dapL PE=3 SV=1
Length = 411
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 136 VVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQ 195
V+ H + D L+ L + +F +EKV +++ N+ V + +LQ
Sbjct: 140 VMAGHTGDANDRGEYDGLVYLPISAENNFTAEIPSEKVDLIYLCFPNNPTGAVASREYLQ 199
Query: 196 EFVEARRTAG---LNNAPLCMWSSSPPL-----ELKG-----VPSETLSANAGF----VT 238
+V+ R G L +A + + P + E+ G + + S NAGF
Sbjct: 200 AWVDYARANGAIILFDAAYEAFITDPAIPHSIFEIPGARDCAIEFRSFSKNAGFTGTRCA 259
Query: 239 FVIFPRHVEGKKLDRT------VWN--LSTFHAYVSYHVKVG 272
F + P+ ++GK D + +WN ST VSY V+ G
Sbjct: 260 FTVVPKGLKGKAADGSEVELWGLWNRRQSTKFNGVSYIVQRG 301
>sp|O82355|LEA2R_ARATH Desiccation-related protein At2g46140 OS=Arabidopsis thaliana
GN=At2g46140 PE=1 SV=1
Length = 166
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 3 LLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
LL F E L N +VD+ V D V YH +V++KNP+ S S+P+
Sbjct: 19 LLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPY----SQSIPI 72
>sp|P96403|Y221_MYCTU Putative diacyglycerol O-acyltransferase Rv0221/MT0231
OS=Mycobacterium tuberculosis GN=Rv0221 PE=2 SV=2
Length = 469
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 30/117 (25%)
Query: 94 RDGFNLTLKLNLSKLP-PNEENK--HALLVKIASVREVVLGAPLRVVLKHLASKTVASDI 150
RDG N L LN+S +P P E + AL+ +I SV + G+ L + TV S +
Sbjct: 367 RDGQNKVLNLNISNVPGPRERGRVGAALVTEIYSVGPLTAGSGLNI--------TVWSYV 418
Query: 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLN 207
DQL V + TV P + + +F+E RR AGL+
Sbjct: 419 DQLNISV-----------LTDGSTVQDPHE--------VTAGMIADFIEIRRAAGLS 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,482,961
Number of Sequences: 539616
Number of extensions: 4083467
Number of successful extensions: 8833
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8785
Number of HSP's gapped (non-prelim): 18
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)