Query 023031
Match_columns 288
No_of_seqs 124 out of 197
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_D Actin-related protein 2 100.0 2E-114 5E-119 812.1 17.8 277 1-288 1-296 (317)
2 1k8k_D P34, ARP2/3 complex 34 100.0 4E-112 1E-116 793.2 21.2 270 1-288 1-278 (300)
3 3dwl_F Actin-related protein 2 91.7 0.47 1.6E-05 40.6 7.1 114 151-285 48-166 (168)
4 1k8k_F P20, ARP2/3 complex 20 90.8 0.39 1.3E-05 41.1 5.9 108 151-279 48-158 (168)
5 3fds_D DNA polymerase sliding 69.8 22 0.00074 30.9 8.9 96 131-244 137-244 (245)
6 3ifv_A PCNA; processivity fact 67.0 33 0.0011 29.9 9.5 99 131-244 135-243 (247)
7 3dwl_F Actin-related protein 2 54.4 19 0.00065 30.7 5.3 48 50-108 68-123 (168)
8 1k8k_F P20, ARP2/3 complex 20 50.4 22 0.00076 30.3 5.1 48 50-108 68-123 (168)
9 3lx2_A DNA polymerase sliding 36.9 2.1E+02 0.0071 24.8 15.9 84 153-248 154-251 (259)
10 2hew_F Tumor necrosis factor l 25.6 41 0.0014 28.1 2.7 33 152-184 68-105 (152)
11 3fds_C DNA polymerase sliding 24.0 3.5E+02 0.012 23.4 10.6 99 129-244 138-248 (249)
12 3ogk_Q JAZ1 incomplete degron 23.9 41 0.0014 19.5 1.7 20 191-210 2-21 (22)
13 3p91_A Proliferating cell nucl 23.4 3.7E+02 0.012 23.3 16.0 81 153-245 162-257 (265)
14 2hev_F Tumor necrosis factor l 20.6 67 0.0023 26.4 3.0 33 152-184 67-102 (137)
No 1
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-114 Score=812.14 Aligned_cols=277 Identities=29% Similarity=0.577 Sum_probs=240.0
Q ss_pred CcccCcccHHHHHHHHHhhhccCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHHHHH
Q 023031 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK 80 (288)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e~Lk 80 (288)
|||||++|+||+++|++|+. +++|.+||++++|||||+||||++ ++|++|+|||++|| |.++.+|||.|+||
T Consensus 1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~------~~~l~~~Ga~e~Lk 72 (317)
T 3dwl_D 1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC------YPELVNYGTLDLLK 72 (317)
T ss_dssp CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS------HHHHHTTTHHHHHH
T ss_pred CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc------hHHHHhcCHHHHHH
Confidence 99999999999999999996 489999999999999999999996 89999999999998 77888999999999
Q ss_pred HhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhchhHHHHHHHHhccc--------ccc----
Q 023031 81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKT--------VAS---- 148 (288)
Q Consensus 81 ~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aapF~~~f~~l~~~~--------~~~---- 148 (288)
++||+++ .+||+|||+||.+||++||++++++.++|+++|+||||||||||+++|+.+++.. .++
T Consensus 73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~ 149 (317)
T 3dwl_D 73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK 149 (317)
T ss_dssp HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence 9999997 6799999999999999999999999999999999999999999999997544210 111
Q ss_pred --cccceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccC-CCCCcccCCC
Q 023031 149 --DIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225 (288)
Q Consensus 149 --~~~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s-~~PPlEL~~~ 225 (288)
+++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++++||||+|| ++||+||+|+
T Consensus 150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~ 229 (317)
T 3dwl_D 150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229 (317)
T ss_dssp HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence 2468999999999999999999999999999999999999999999999999999889999999999 6999999999
Q ss_pred CCCCCCCCeeEEEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhhhcC
Q 023031 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQTLA 288 (288)
Q Consensus 226 ~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lkvL~ 288 (288)
++++.++|+|||||||||||++++.+++|||+||+||||||||||| |||||| +||++|||||+
T Consensus 230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLn 296 (317)
T 3dwl_D 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLN 296 (317)
T ss_dssp C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988899999999999999999999 999999 56999999994
No 2
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=4.1e-112 Score=793.23 Aligned_cols=270 Identities=29% Similarity=0.539 Sum_probs=253.8
Q ss_pred CcccCcccHHHHHHHHHhhhc---cCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHH
Q 023031 1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE 77 (288)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~---~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e 77 (288)
|||||++|++|+++|++|+.+ ++||.++|++++|||||+||||+++++|++++|||++|| |.++.+|||.|
T Consensus 1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~------~~~L~~~Ga~e 74 (300)
T 1k8k_D 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF------YKELQAHGADE 74 (300)
T ss_dssp CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT------HHHHHTTTHHH
T ss_pred CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc------hHHHhhcCHHH
Confidence 999999999999999999987 578999999999999999999999999999999999998 77888999999
Q ss_pred HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhchhHHHHHHHHhcccccccccceeEEe
Q 023031 78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV 157 (288)
Q Consensus 78 ~Lk~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aapF~~~f~~l~~~~~~~~~~~~~~i~ 157 (288)
+||++||+++ .+||+|||+||.+||++||++ +.++|+++|+||||||||||+++|+..+.+ +++..+++|+
T Consensus 75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~---~~~li~kia~LKrn~laapF~~~F~~~~~~---~~~~~~~~I~ 145 (300)
T 1k8k_D 75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPAS---KDSIVHQAGMLKRNCFASVFEKYFQFQEEG---KEGENRAVIH 145 (300)
T ss_dssp HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSC---HHHHHHHHHTHHHHHHHHHHHHHHHHHHHT---CCSCCCEEEE
T ss_pred HHHHHccccc---cCCCCCccEEEEEEHHHCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCceEEee
Confidence 9999999997 379999999999999999998 457999999999999999999999944332 2333449999
Q ss_pred ccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCC-CCCcccCCCCCCCCCCCeeE
Q 023031 158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF 236 (288)
Q Consensus 158 yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~-~PPlEL~~~~~~~~~~n~gy 236 (288)
||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+ +++||||+||+ +||+||+|++ .+.++|+||
T Consensus 146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy 222 (300)
T 1k8k_D 146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222 (300)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence 9999999999999999999999999999999999999999999999 99999999998 9999999998 466999999
Q ss_pred EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhhhcC
Q 023031 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQTLA 288 (288)
Q Consensus 237 VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lkvL~ 288 (288)
|||||||||++++++++|||+||+||||||||||| |||||| +||++|||||+
T Consensus 223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLn 278 (300)
T 1k8k_D 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLN 278 (300)
T ss_dssp EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999 89999999995
No 3
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.70 E-value=0.47 Score=40.63 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=83.9
Q ss_pred cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (288)
Q Consensus 151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~ 230 (288)
-.|+.|..-+.|..+|.++-+.|.|.|...-.|+-++++.+-|+. |.-.|-. +=+||-. .|-
T Consensus 48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv--- 109 (168)
T 3dwl_F 48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFILRR---------KPV--- 109 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTTBCS---------SCC---
T ss_pred cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCc---
Confidence 467788888899999999999999999999999999999999987 4433321 2222222 111
Q ss_pred CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchhhcHH--HHhh
Q 023031 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINRSILS--SLSQ 285 (288)
Q Consensus 231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR~Rv~--~~lk 285 (288)
-|| |||.+--.|++.--+.+-|+.|.+|=.-.-=-|.- -.+-+|.|.- +||+
T Consensus 110 ---~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~ 166 (168)
T 3dwl_F 110 ---QGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLS 166 (168)
T ss_dssp ---TTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred ---CCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 144 89999999998766789999999998877666655 6666775532 4554
No 4
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=90.83 E-value=0.39 Score=41.14 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=79.4
Q ss_pred cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (288)
Q Consensus 151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~ 230 (288)
-.++.|...++|..+|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-. +=+||-. .|-
T Consensus 48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv--- 109 (168)
T 1k8k_F 48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPV--- 109 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCC---
T ss_pred ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCc---
Confidence 457788888899999999999999999999999999999999987 4444421 2222322 111
Q ss_pred CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchhhc
Q 023031 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINRSI 279 (288)
Q Consensus 231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR~R 279 (288)
-|| |||.+---|++.--+.+-|+.|.+|=.-.-=-|.- -.+-+|.|
T Consensus 110 ---~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR 158 (168)
T 1k8k_F 110 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARAR 158 (168)
T ss_dssp ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 133 89999999998766789999999987665555544 45555644
No 5
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=69.79 E-value=22 Score=30.94 Aligned_cols=96 Identities=13% Similarity=0.269 Sum_probs=62.3
Q ss_pred chhHHHHHHHHhcccccccccceeEEeccCCceEEEeecC--CeeEEEee------cee-cCCccchhhhHHHHHHHHHh
Q 023031 131 GAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQA--EKVTVVFP------MRF-NDSIDTVLATSFLQEFVEAR 201 (288)
Q Consensus 131 aapF~~~f~~l~~~~~~~~~~~~~~i~yR~~E~iyi~~~~--DrVTViFs------t~F-~D~~D~vigkvFLQEFvdaR 201 (288)
+..|.++++.++.- ++.+.|.--++ .+.+.+++ +++.+.++ ..+ .++....|.--+|.+|..|
T Consensus 137 s~~f~~~i~~~~~~------s~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~ka- 208 (245)
T 3fds_D 137 TITFADIIDELSDL------GEVLNIHSKEN-KLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKM- 208 (245)
T ss_dssp HHHHHHHHHHHTTT------CSEEEEEEETT-EEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGG-
T ss_pred HHHHHHHHHHHHhc------CCEEEEEEeCC-EEEEEEEecCcEEEEEEcCCCCceEEEecceEEEEEEHHHHHHHhhh-
Confidence 55566677665432 13455555444 57777766 46777776 344 6677778887788776644
Q ss_pred hhcCCCCCCCcccC--CCCCcccC-CCCCCCCCCCeeEEEEEecCC
Q 023031 202 RTAGLNNAPLCMWS--SSPPLELK-GVPSETLSANAGFVTFVIFPR 244 (288)
Q Consensus 202 r~~~~~~APqvl~s--~~PPlEL~-~~~~~~~~~n~gyVTFvLFpr 244 (288)
++.+.+|..+ .+-|+-|+ .+ ++.||++|.|=||
T Consensus 209 ----~~~s~~V~i~~~~~~Pl~l~~~i------~~~g~~~y~laPr 244 (245)
T 3fds_D 209 ----RRASDSMELYFGSQIPLKLRFKL------PQEGYGDFYIAPR 244 (245)
T ss_dssp ----GGTCSEEEEEECTTSCEEEEEEC------STTCEEEEEECCC
T ss_pred ----cccCCEEEEEecCCccEEEEEEe------CCCeEEEEEEeec
Confidence 4457788544 45688776 22 2258999999997
No 6
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=66.98 E-value=33 Score=29.86 Aligned_cols=99 Identities=17% Similarity=0.357 Sum_probs=62.7
Q ss_pred chhHHHHHHHHhcccccccccceeEEecc-CCceEEEeecCC--eeEEEee----cee-cCCccchhhhHHHHHHHHHhh
Q 023031 131 GAPLRVVLKHLASKTVASDIDQLLALVHR-PKESFFLIPQAE--KVTVVFP----MRF-NDSIDTVLATSFLQEFVEARR 202 (288)
Q Consensus 131 aapF~~~f~~l~~~~~~~~~~~~~~i~yR-~~E~iyi~~~~D--rVTViFs----t~F-~D~~D~vigkvFLQEFvdaRr 202 (288)
+..|.++++.+..- ++.+.|.-- +++.+.+.+++| ++.+.++ ..+ .++....|.--+|.+|..|
T Consensus 135 s~~f~~~i~~~~~~------sd~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-- 206 (247)
T 3ifv_A 135 GTHLDRGIKAADMV------SDHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKA-- 206 (247)
T ss_dssp HHHHHHHHHHHHHH------CSEEEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhh------CCEEEEEEECCCCEEEEEEEecceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhh--
Confidence 44556666554321 135566554 356787777764 6777775 233 5567777888888887755
Q ss_pred hcCCCCCCCcccC--CCCCcccCCCCCCCCCCCeeEEEEEecCC
Q 023031 203 TAGLNNAPLCMWS--SSPPLELKGVPSETLSANAGFVTFVIFPR 244 (288)
Q Consensus 203 ~~~~~~APqvl~s--~~PPlEL~~~~~~~~~~n~gyVTFvLFpr 244 (288)
++.+.+|..+ .+-|+.|+=- .+.+.||++|.|=||
T Consensus 207 ---~~~s~~V~i~~~~~~Pl~l~~~----i~~~~g~~~~~lAPr 243 (247)
T 3ifv_A 207 ---IPTDAEVTVELGEEFPVKLHYQ----IAEGMGTITYMLAPR 243 (247)
T ss_dssp ---SCTTCEEEEEECBSSCEEEEEE----EGGGTEEEEEEECCC
T ss_pred ---ccCCCEEEEEecCCccEEEEEE----EcCCcEEEEEEEeec
Confidence 4557788544 4668887631 112358999999997
No 7
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=54.41 E-value=19 Score=30.72 Aligned_cols=48 Identities=8% Similarity=0.232 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCCCCccccCCCCccHHHHHHHhhcc--------cccccCCCCCCcceEEEEcCCCC
Q 023031 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGN--------VVQILDPPRDGFNLTLKLNLSKL 108 (288)
Q Consensus 50 ~~l~vSis~~~~~~e~~~~~~l~~G~~e~Lk~~Yg~--------~~~~~~~pe~Gy~~tL~idl~~l 108 (288)
|-+.|||.++- .|++ ...|-++|-. +....-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq-------aDei----e~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~ 123 (168)
T 3dwl_F 68 NSVRFSIRIKQ-------VDEI----ERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHT 123 (168)
T ss_dssp SEEEEEEECCC-------CSSH----HHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHH
T ss_pred ceEEEEEEehh-------hchH----HHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHH
Confidence 67899999993 1222 3444444433 33334568899999999986654
No 8
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=50.44 E-value=22 Score=30.33 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=30.0
Q ss_pred ceEEEEEEeCCCCCCccccCCCCccHHHHHHHhhc--------ccccccCCCCCCcceEEEEcCCCC
Q 023031 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYG--------NVVQILDPPRDGFNLTLKLNLSKL 108 (288)
Q Consensus 50 ~~l~vSis~~~~~~e~~~~~~l~~G~~e~Lk~~Yg--------~~~~~~~~pe~Gy~~tL~idl~~l 108 (288)
|-+.|||.++- .|++ +..|-++|- ++....-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq-------~Dei----E~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~ 123 (168)
T 1k8k_F 68 NSVRVSIAVKQ-------ADEI----EKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 123 (168)
T ss_dssp SEEEEEEECCC-------CSHH----HHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHH
T ss_pred ceEEEEEEEcc-------cChH----HHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhH
Confidence 67899999993 1222 333444443 333334568899999999985443
No 9
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=36.93 E-value=2.1e+02 Score=24.80 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=52.6
Q ss_pred eeEEeccCCceEEEeecC--CeeEEEee------ceec---CCccchhhhHHHHHHHHHhhhcCCCCCCCcc--cCCCCC
Q 023031 153 LLALVHRPKESFFLIPQA--EKVTVVFP------MRFN---DSIDTVLATSFLQEFVEARRTAGLNNAPLCM--WSSSPP 219 (288)
Q Consensus 153 ~~~i~yR~~E~iyi~~~~--DrVTViFs------t~F~---D~~D~vigkvFLQEFvdaRr~~~~~~APqvl--~s~~PP 219 (288)
.+.|.-- ++.+.+.+++ +++.+.++ ..++ ++....|.--+|.+|..| ++.+.+|. |+.+-|
T Consensus 154 ~V~i~~~-~~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-----~~~s~~V~l~~~~~~P 227 (259)
T 3lx2_A 154 SIYFMAT-PEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRS-----LADADEVIIRFGFDIP 227 (259)
T ss_dssp EEEEEEC-SSCEEEEEECSSCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHSS-----SCTTSEEEEEECTTSC
T ss_pred EEEEEEE-CCEEEEEEEecCcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhcc-----ccCCCeEEEEeCCCCC
Confidence 3444433 3456666655 46777775 3454 667777777777766643 55677885 445668
Q ss_pred cccC-CCCCCCCCCCeeEEEEEecCCCCCC
Q 023031 220 LELK-GVPSETLSANAGFVTFVIFPRHVEG 248 (288)
Q Consensus 220 lEL~-~~~~~~~~~n~gyVTFvLFprH~~~ 248 (288)
+-|+ .++ +.||++|.|-||--.|
T Consensus 228 l~l~~~i~------~~g~~~y~laP~~~~~ 251 (259)
T 3lx2_A 228 LLLKYMVR------DAGEVSFLIAPRVEEG 251 (259)
T ss_dssp EEEEEEET------TTEEEEEEECCCC---
T ss_pred EEEEEEeC------CCeEEEEEEccccCCC
Confidence 8876 331 2599999999987665
No 10
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=25.62 E-value=41 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=22.3
Q ss_pred ceeEEeccCCce-EEEee--cCCe--eEEEeeceecCC
Q 023031 152 QLLALVHRPKES-FFLIP--QAEK--VTVVFPMRFNDS 184 (288)
Q Consensus 152 ~~~~i~yR~~E~-iyi~~--~~Dr--VTViFst~F~D~ 184 (288)
-.+.++||+||. +||-. +..+ -+++-+..|||+
T Consensus 68 ~sI~l~YRk~~~plf~~~L~~~~~V~sv~Va~L~fKDk 105 (152)
T 2hew_F 68 VKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDK 105 (152)
T ss_dssp CCEEEECCTTSCCEEECCCTTSSEEEEEEEEEECTTCE
T ss_pred cEEEEEEecCCCccchhhhhccceEeEEEEEEEeeccE
Confidence 367899999776 66433 2222 356778999984
No 11
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=23.99 E-value=3.5e+02 Score=23.38 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=57.1
Q ss_pred HhchhHHHHHHHHhcccccccccceeEEeccCCceEEEeecCC--eeEEEe-------eceecCCccchhhhHHHHHHHH
Q 023031 129 VLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVF-------PMRFNDSIDTVLATSFLQEFVE 199 (288)
Q Consensus 129 ~~aapF~~~f~~l~~~~~~~~~~~~~~i~yR~~E~iyi~~~~D--rVTViF-------st~F~D~~D~vigkvFLQEFvd 199 (288)
+-++.|+++++.+..- ++.+.|.--+ +.+.+...+| ...+.+ +..-+++....|+--.|-.|..
T Consensus 138 m~s~~f~~~~~dl~~~------sd~v~i~~~~-~~~~f~~~gd~~~~~~~~~~~~~l~~~~~~~~~~~~fsl~yL~~~~K 210 (249)
T 3fds_C 138 TDESVLNVIAADVTLV------GEEMRISTEE-DKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVK 210 (249)
T ss_dssp ECHHHHHHHHHHHHHH------CSEEEEEEET-TEEEEEEEETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHh------CCEEEEEEEC-CEEEEEEEecCcEEEEEEcCCCCcEEEEcCCceEEEEEHHHHHHHHh
Confidence 3366777777666532 1233443332 3444444443 233333 1223456667777777777775
Q ss_pred -HhhhcCCCCCCCcc--cCCCCCcccCCCCCCCCCCCeeEEEEEecCC
Q 023031 200 -ARRTAGLNNAPLCM--WSSSPPLELKGVPSETLSANAGFVTFVIFPR 244 (288)
Q Consensus 200 -aRr~~~~~~APqvl--~s~~PPlEL~~~~~~~~~~n~gyVTFvLFpr 244 (288)
| .+-|.+|. ++.+-|+.|+=- . ++.|||+|.|=||
T Consensus 211 ~a-----~~ls~~V~i~~~~~~Pl~l~y~----i-~~~G~l~f~lAPr 248 (249)
T 3fds_C 211 GL-----RGFSAPTMVSFGENLPMKIDVE----A-VSGGHMIFWIAPR 248 (249)
T ss_dssp TT-----TTCCSCEEEEECTTCCEEEEEE----C-TTSCEEEEEECCB
T ss_pred hh-----cccCCEEEEEecCCcCEEEEEE----e-CCCcEEEEEEecc
Confidence 4 35577774 446889988652 1 1249999999997
No 12
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=23.89 E-value=41 Score=19.50 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhcCCCCCC
Q 023031 191 TSFLQEFVEARRTAGLNNAP 210 (288)
Q Consensus 191 kvFLQEFvdaRr~~~~~~AP 210 (288)
|.=||-|.+-||......||
T Consensus 2 k~SLqRFleKRk~R~~~~~P 21 (22)
T 3ogk_Q 2 RASLHRFLEKRKDRVTSKAP 21 (26)
T ss_pred chhHHHHHHHHHHHhhccCC
Confidence 34589999999964344555
No 13
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=23.38 E-value=3.7e+02 Score=23.34 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=54.2
Q ss_pred eeEEeccCCceEEEeecCC--eeEEEeec---------ee--cCCccchhhhHHHHHHHHHhhhcCCCCCCCcc--cCCC
Q 023031 153 LLALVHRPKESFFLIPQAE--KVTVVFPM---------RF--NDSIDTVLATSFLQEFVEARRTAGLNNAPLCM--WSSS 217 (288)
Q Consensus 153 ~~~i~yR~~E~iyi~~~~D--rVTViFst---------~F--~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl--~s~~ 217 (288)
.+.|.-- ++.+.+.+++| ++.+.++. .| .++....|.--+|..|..| .+-|.+|. |+.+
T Consensus 162 ~V~i~~~-~~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-----~~ls~~V~i~~~~~ 235 (265)
T 3p91_A 162 SITIGCT-KNEVTLTTKGAMCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKS-----APLADNVKLSLSGQ 235 (265)
T ss_dssp EEEEEEC-SSEEEEEEECSSCEEEEEEEC-------CCEEEESSCEEEEEEHHHHHHHGGG-----GGGCSEEEEEECSS
T ss_pred EEEEEEE-CCEEEEEEEecCceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHHhhcc-----cccCCEEEEEeCCC
Confidence 4455443 34677777664 78888862 34 4677888888888887744 34467775 4456
Q ss_pred CCcccCCCCCCCCCCCeeEEEEEecCCC
Q 023031 218 PPLELKGVPSETLSANAGFVTFVIFPRH 245 (288)
Q Consensus 218 PPlEL~~~~~~~~~~n~gyVTFvLFprH 245 (288)
-|+.|+=- . +.||++|.|=||=
T Consensus 236 ~Pl~l~~~----i--~~g~~~f~lAPri 257 (265)
T 3p91_A 236 APLIMEFK----G--EACVLKFYLAPKF 257 (265)
T ss_dssp SCEEEEEE----E--TTEEEEEEECCBC
T ss_pred ccEEEEEE----E--CCEEEEEEEcCCC
Confidence 68887631 1 3589999999985
No 14
>2hev_F Tumor necrosis factor ligand superfamily member 4; cytokine, receptor-ligand complex, TNFSF, TNFRSF; HET: NAG; 2.41A {Homo sapiens} SCOP: b.22.1.1
Probab=20.63 E-value=67 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=22.9
Q ss_pred ceeEEeccCCce-EEEeecCCe--eEEEeeceecCC
Q 023031 152 QLLALVHRPKES-FFLIPQAEK--VTVVFPMRFNDS 184 (288)
Q Consensus 152 ~~~~i~yR~~E~-iyi~~~~Dr--VTViFst~F~D~ 184 (288)
-.+.++||++|. ++...+..+ -+++-+..|||+
T Consensus 67 ~~I~l~YRk~~~p~~~L~~~~~v~s~~Va~L~fKDk 102 (137)
T 2hev_F 67 VDISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDK 102 (137)
T ss_dssp EEEEEESSTTSCCSEEEEEEEEEEEEEEEEECTTCE
T ss_pred cEEEEEEecCCCchhhhccceeEEEEEEEEEeeccE
Confidence 467899999776 655444433 356778999984
Done!