Your job contains 1 sequence.
>023032
MAASFSSLSFFSSTIFLTSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFT
GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKT
GRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFD
GKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDI
LDAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESEAREAGEESDAAE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023032
(288 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025107 - symbol:RPL4 "ribosomal protein L4" s... 861 4.3e-86 1
UNIPROTKB|Q3A9R7 - symbol:rplD "50S ribosomal protein L4"... 339 8.8e-31 1
TIGR_CMR|CHY_2308 - symbol:CHY_2308 "ribosomal protein L4... 339 8.8e-31 1
TIGR_CMR|BA_0111 - symbol:BA_0111 "ribosomal protein L4" ... 330 7.9e-30 1
TIGR_CMR|DET_0475 - symbol:DET_0475 "ribosomal protein L4... 286 3.6e-25 1
TIGR_CMR|GSU_2856 - symbol:GSU_2856 "ribosomal protein L4... 276 4.2e-24 1
UNIPROTKB|P60729 - symbol:rplD "50S ribosomal protein L4"... 258 3.4e-22 1
TIGR_CMR|CPS_0872 - symbol:CPS_0872 "ribosomal protein L4... 258 3.4e-22 1
TIGR_CMR|CBU_0239 - symbol:CBU_0239 "ribosomal protein L4... 252 1.5e-21 1
UNIPROTKB|Q32PI6 - symbol:MRPL4 "39S ribosomal protein L4... 242 1.7e-20 1
ASPGD|ASPL0000008992 - symbol:AN6843 species:162425 "Emer... 238 4.4e-20 1
TIGR_CMR|SO_0232 - symbol:SO_0232 "ribosomal protein L4" ... 238 4.4e-20 1
UNIPROTKB|K7ES61 - symbol:MRPL4 "39S ribosomal protein L4... 235 9.2e-20 1
UNIPROTKB|Q9BYD3 - symbol:MRPL4 "39S ribosomal protein L4... 235 9.2e-20 1
UNIPROTKB|Q9KNY5 - symbol:rplD "50S ribosomal protein L4"... 235 9.2e-20 1
TIGR_CMR|VC_2595 - symbol:VC_2595 "ribosomal protein L4" ... 235 9.2e-20 1
UNIPROTKB|P60723 - symbol:rplD species:83333 "Escherichia... 232 1.9e-19 1
UNIPROTKB|F1S3J8 - symbol:MRPL4 "Uncharacterized protein"... 230 3.1e-19 1
UNIPROTKB|F1PB94 - symbol:MRPL4 "Uncharacterized protein"... 229 4.0e-19 1
MGI|MGI:2137210 - symbol:Mrpl4 "mitochondrial ribosomal p... 229 4.0e-19 1
RGD|1311777 - symbol:Mrpl4 "mitochondrial ribosomal prote... 224 1.4e-18 1
TAIR|locus:2061659 - symbol:AT2G20060 species:3702 "Arabi... 224 1.4e-18 1
ZFIN|ZDB-GENE-050522-388 - symbol:zgmrpl4 "mitochondrial ... 221 2.8e-18 1
TIGR_CMR|APH_0281 - symbol:APH_0281 "ribosomal protein L4... 219 4.6e-18 1
TIGR_CMR|SPO_3824 - symbol:SPO_3824 "ribosomal protein L4... 217 7.5e-18 1
TIGR_CMR|ECH_0410 - symbol:ECH_0410 "ribosomal protein L4... 207 8.6e-17 1
FB|FBgn0001995 - symbol:mRpL4 "mitochondrial ribosomal pr... 200 4.7e-16 1
POMBASE|SPBC2D10.08c - symbol:SPBC2D10.08c "mitochondrial... 200 4.7e-16 1
DICTYBASE|DDB_G0283275 - symbol:DDB_G0283275 "ribosomal p... 198 7.7e-16 1
UNIPROTKB|K7ELQ0 - symbol:MRPL4 "39S ribosomal protein L4... 189 6.9e-15 1
TIGR_CMR|NSE_0267 - symbol:NSE_0267 "ribosomal protein L4... 181 4.9e-14 1
UNIPROTKB|K7EJ73 - symbol:MRPL4 "39S ribosomal protein L4... 174 2.7e-13 1
TIGR_CMR|CJE_1874 - symbol:CJE_1874 "ribosomal protein L4... 174 2.7e-13 1
UNIPROTKB|K7ELF1 - symbol:MRPL4 "39S ribosomal protein L4... 161 6.4e-12 1
WB|WBGene00020717 - symbol:mrpl-4 species:6239 "Caenorhab... 144 4.5e-08 1
>TAIR|locus:2025107 [details] [associations]
symbol:RPL4 "ribosomal protein L4" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0000311 "plastid large ribosomal subunit"
evidence=TAS] [GO:0009547 "plastid ribosome" evidence=IPI]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009570 GO:GO:0008266
GO:GO:0006412 GO:GO:0003735 GO:GO:0009535 GO:GO:0022626
GO:GO:0019843 EMBL:AC022464 UniGene:At.68122 GO:GO:0000311
EMBL:Y14565 EMBL:Y14566 EMBL:AY063889 EMBL:AY117317 EMBL:AY085081
IPI:IPI00519853 PIR:D86208 RefSeq:NP_001030985.1
RefSeq:NP_001030986.1 RefSeq:NP_563786.1 UniGene:At.10172
ProteinModelPortal:O50061 SMR:O50061 STRING:O50061 PaxDb:O50061
PRIDE:O50061 EnsemblPlants:AT1G07320.1 GeneID:837243
KEGG:ath:AT1G07320 GeneFarm:65 TAIR:At1g07320 eggNOG:COG0088
HOGENOM:HOG000248767 InParanoid:O50061 KO:K02926 OMA:FDILNAN
PhylomeDB:O50061 ProtClustDB:CLSN2687716 Genevestigator:O50061
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 Uniprot:O50061
Length = 282
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 171/243 (70%), Positives = 199/243 (81%)
Query: 22 NKVPKP-IQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTAR 80
+++PK I ++K S KPL VSSQLA+ LPILSF GEK+GETYLDLK+A DTAR
Sbjct: 24 HQIPKTYISVSKLGS--GRVSKPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTAR 80
Query: 81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
AVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVF
Sbjct: 81 AVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVF 140
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN-TIVVEEFDGKFERPKTKEFIEAMRRWG 199
GP+P+DWSIKIN+KEK+L E IVVEEF KFE+PKTK+F+ AM+RWG
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200
Query: 200 LDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259
LDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN R
Sbjct: 201 LDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNAR 260
Query: 260 YGV 262
YGV
Sbjct: 261 YGV 263
>UNIPROTKB|Q3A9R7 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_361117.1 ProteinModelPortal:Q3A9R7
STRING:Q3A9R7 GeneID:3728653 KEGG:chy:CHY_2308 PATRIC:21277687
BioCyc:CHYD246194:GJCN-2307-MONOMER Uniprot:Q3A9R7
Length = 206
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 80/201 (39%), Positives = 110/201 (54%)
Query: 54 LPILSFTGEKIGETYL-DLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGR 112
+P+ + G ++GE L D AP +AV++ + + N+RRGT T TRGEV GGGR
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAP-VNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGR 62
Query: 113 KPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN 172
KP+ QK TGRAR GS R+PL GG+VFGP PRD+S + KK +R N
Sbjct: 63 KPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENN 122
Query: 173 TIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP 232
IVV+ F PKTKE I + L K + E VEKS+RNI + ++T
Sbjct: 123 LIVVDSLT--FAAPKTKEMIRVLNN--LKVNGKTLIVTAGYDEIVEKSARNIPGVSVMTA 178
Query: 233 RTLNLFDILDAETLVLTPSTV 253
+LN +L+ + L++T V
Sbjct: 179 PSLNALSLLNHDKLIMTRDAV 199
>TIGR_CMR|CHY_2308 [details] [associations]
symbol:CHY_2308 "ribosomal protein L4" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_361117.1 ProteinModelPortal:Q3A9R7
STRING:Q3A9R7 GeneID:3728653 KEGG:chy:CHY_2308 PATRIC:21277687
BioCyc:CHYD246194:GJCN-2307-MONOMER Uniprot:Q3A9R7
Length = 206
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 80/201 (39%), Positives = 110/201 (54%)
Query: 54 LPILSFTGEKIGETYL-DLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGR 112
+P+ + G ++GE L D AP +AV++ + + N+RRGT T TRGEV GGGR
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAP-VNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGR 62
Query: 113 KPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN 172
KP+ QK TGRAR GS R+PL GG+VFGP PRD+S + KK +R N
Sbjct: 63 KPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENN 122
Query: 173 TIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP 232
IVV+ F PKTKE I + L K + E VEKS+RNI + ++T
Sbjct: 123 LIVVDSLT--FAAPKTKEMIRVLNN--LKVNGKTLIVTAGYDEIVEKSARNIPGVSVMTA 178
Query: 233 RTLNLFDILDAETLVLTPSTV 253
+LN +L+ + L++T V
Sbjct: 179 PSLNALSLLNHDKLIMTRDAV 199
>TIGR_CMR|BA_0111 [details] [associations]
symbol:BA_0111 "ribosomal protein L4" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088
HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:NP_842679.1 RefSeq:YP_016716.1
RefSeq:YP_026397.1 ProteinModelPortal:Q81VS9 DNASU:1086331
EnsemblBacteria:EBBACT00000008905 EnsemblBacteria:EBBACT00000014698
EnsemblBacteria:EBBACT00000019905 GeneID:1086331 GeneID:2819212
GeneID:2850889 KEGG:ban:BA_0111 KEGG:bar:GBAA_0111 KEGG:bat:BAS0111
BioCyc:BANT260799:GJAJ-122-MONOMER
BioCyc:BANT261594:GJ7F-124-MONOMER Uniprot:Q81VS9
Length = 207
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 76/195 (38%), Positives = 113/195 (57%)
Query: 60 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKK 119
TG ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK
Sbjct: 10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKG 69
Query: 120 TGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEF 179
TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL EN IVV E
Sbjct: 70 TGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVV-ENNIVVLE- 127
Query: 180 DGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFD 239
D PKTK+ + ++ GL ++KA + + +E+VE S+RNI + ++T +N+ D
Sbjct: 128 DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLD 185
Query: 240 ILDAETLVLTPSTVD 254
+L + L++T + V+
Sbjct: 186 VLHHDKLIMTKAAVE 200
>TIGR_CMR|DET_0475 [details] [associations]
symbol:DET_0475 "ribosomal protein L4" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B
HOGENOM:HOG000248766 OMA:PWNQKGT RefSeq:YP_181219.1 STRING:Q3Z980
GeneID:3230154 KEGG:det:DET0475 PATRIC:21608019
BioCyc:DETH243164:GJNF-475-MONOMER Uniprot:Q3Z980
Length = 210
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 70/200 (35%), Positives = 100/200 (50%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+P+ + +GE I + A+VH+A + N R+GT ST TRGEV+G RK
Sbjct: 3 IPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSSRK 62
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENT 173
Y QK TG AR G+NR+P+R GGV FGP+PRD+S + KK +R
Sbjct: 63 IYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESGEL 122
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
VV++ F+ PKT++ + + L V N KS+RNI +K
Sbjct: 123 KVVDQLS--FDEPKTRDMAKILA--ALQVMSPTLIAVDNPDTNFIKSARNIPAVKTTPAN 178
Query: 234 TLNLFDILDAETLVLTPSTV 253
LN+ D+L + LV+T V
Sbjct: 179 LLNISDMLRNKQLVMTEEAV 198
>TIGR_CMR|GSU_2856 [details] [associations]
symbol:GSU_2856 "ribosomal protein L4" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:NP_953899.1 ProteinModelPortal:P61063
GeneID:2686778 KEGG:gsu:GSU2856 PATRIC:22028559
BioCyc:GSUL243231:GH27-2830-MONOMER Uniprot:P61063
Length = 207
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 63/205 (30%), Positives = 104/205 (50%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + K+G L+ + ++H A+ + N+R GT S R V GGG+K
Sbjct: 4 IDVFDISKNKVGVMDLNDNVFNGEVKEYLIHEAIKVQLANRRAGTVSVKNRAIVSGGGKK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENT 173
PY QK TG+AR+G R P GGGV FGP+P+ +++ +NKK ++
Sbjct: 64 PYRQKGTGQARQGCIRAPHFVGGGVAFGPRPKVYNLSMNKKARKAAVRSALSMLYKENKL 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
V++ F TK F+ ++ + L K +V E + N+E S+RN+ +K+L
Sbjct: 124 SVLDSFT--LPSISTKGFVTVLKAFDL---AKTLVVVDEPNLNLELSARNVKDVKVLKAE 178
Query: 234 TLNLFDILDAETLVLTPSTVDFLNG 258
LN+FDI+ +++T S V + G
Sbjct: 179 HLNVFDIVKYNNIIVTQSAVRTIEG 203
>UNIPROTKB|P60729 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 EMBL:BX842574 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B PIR:A70642
RefSeq:NP_215216.1 RefSeq:NP_335146.1 RefSeq:YP_006514046.1
ProteinModelPortal:P60729 SMR:P60729 PRIDE:P60729
EnsemblBacteria:EBMYCT00000000063 EnsemblBacteria:EBMYCT00000070302
GeneID:13318591 GeneID:888345 GeneID:926019 KEGG:mtc:MT0729
KEGG:mtu:Rv0702 KEGG:mtv:RVBD_0702 PATRIC:18123335
TubercuList:Rv0702 OMA:GAGRKPF Uniprot:P60729
Length = 223
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 67/180 (37%), Positives = 94/180 (52%)
Query: 81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
A++H+ + R+GT ST TRGEV GGGRKPY QK TGRAR+GS R P GGGVV
Sbjct: 38 ALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVH 97
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXENT---IVVEEFDGKFERPKTKEFIEAMRR 197
GPKPRD+S + KK + N + E +G + P TK +
Sbjct: 98 GPKPRDYSQRTPKK--MIAAALRGALSDRARNGRIHAITELVEG--QNPSTKSARAFLA- 152
Query: 198 WGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLN 257
L +++ ++ E KS RN+ + +L P LN +D+L A+ +V + V+ LN
Sbjct: 153 -SLTERKQVLVVIGRSDEAGAKSVRNLPGVHILAPDQLNTYDVLRADDVVFS---VEALN 208
>TIGR_CMR|CPS_0872 [details] [associations]
symbol:CPS_0872 "ribosomal protein L4" species:167879
"Colwellia psychrerythraea 34H" [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_267621.1 ProteinModelPortal:Q487Z4
SMR:Q487Z4 STRING:Q487Z4 GeneID:3518520 KEGG:cps:CPS_0872
PATRIC:21465037 HOGENOM:HOG000248766 OMA:PWNQKGT
BioCyc:CPSY167879:GI48-958-MONOMER Uniprot:Q487Z4
Length = 201
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/178 (34%), Positives = 93/178 (52%)
Query: 81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
A+VH+ ++ R+GT + TR EV GGG KP+ QK TGRAR G+ R P+ GGV F
Sbjct: 26 ALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTTRGPIWRTGGVTF 85
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 200
KP+D S K+N+K R E +VVE F E PKTKE + ++ GL
Sbjct: 86 AAKPQDHSQKVNRKMYRGAIASILSELVRQERLVVVENFS--VETPKTKELVAKLK--GL 141
Query: 201 DPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG 258
+ K + EV EN+ S+RN+ + + ++ ++ E +++T V + G
Sbjct: 142 ELKD-VLIVTKEVDENLFLSARNLYKVDVRDVAAIDPVSLVGFEKVLITADAVKEIEG 198
>TIGR_CMR|CBU_0239 [details] [associations]
symbol:CBU_0239 "ribosomal protein L4" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
ProtClustDB:PRK05319 HAMAP:MF_01328_B HOGENOM:HOG000248766
OMA:PWNQKGT RefSeq:NP_819283.2 ProteinModelPortal:Q83ES3 SMR:Q83ES3
GeneID:1208120 KEGG:cbu:CBU_0239 PATRIC:17929171
BioCyc:CBUR227377:GJ7S-245-MONOMER Uniprot:Q83ES3
Length = 205
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 67/207 (32%), Positives = 102/207 (49%)
Query: 54 LPILSFTGEKIGETYLDLKSA-APDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGR 112
LP+ SF +K T SA + +VH+ + + R GT + TR EV GGG
Sbjct: 3 LPVNSFD-KKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGGA 61
Query: 113 KPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXEN 172
KP+ QK TGRAR GS+R+PL GGV F KPRD++ K+N+K R E
Sbjct: 62 KPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRREQ 121
Query: 173 TIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP 232
+VV+ K PKT+E E++++ L ++ N+ +SRN+ + +
Sbjct: 122 LVVVDSL--KLNEPKTRELKESLKKLNLG---NVLIIIDGDDRNINLASRNMVGVSVCDA 176
Query: 233 RTLNLFDILDAETLVLTPSTVDFLNGR 259
++ ++ AE +V+T V L R
Sbjct: 177 LHVDPVSLVAAENIVVTVDAVKRLEER 203
>UNIPROTKB|Q32PI6 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 PDB:2FTC PDBsum:2FTC EMBL:BC108102
IPI:IPI00700987 RefSeq:NP_001032527.1 UniGene:Bt.40442
STRING:Q32PI6 PRIDE:Q32PI6 Ensembl:ENSBTAT00000001861 GeneID:507154
KEGG:bta:507154 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 InParanoid:Q32PI6 OMA:VYGLNVY OrthoDB:EOG4XKV7V
EvolutionaryTrace:Q32PI6 NextBio:20867926 Uniprot:Q32PI6
Length = 294
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 80/247 (32%), Positives = 119/247 (48%)
Query: 28 IQLA-KPNSLINLPPK-PLIVSSQLASPL---PIL----SFTG---EKIGETYL--DLKS 73
+Q A KP L N P+ P++ +L PL P+ S G E++G T L D+ S
Sbjct: 29 VQSAEKPEPLANAGPQAPVLRRCELPVPLHRRPVQAWVESLRGYEQERVGLTELHPDVFS 88
Query: 74 AAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLR 133
AP ++H+ I KR A T TR EVRGGGRKP+ QK +GRAR GS R+P+
Sbjct: 89 TAPRLD--ILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSGRARHGSIRSPIW 146
Query: 134 PGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFI 192
GGGV GP+ P + + K + ++ +V+ + P+ +
Sbjct: 147 RGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMEL 206
Query: 193 EAMRRWGLDPKQKATFLVME---VSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 249
RRWG F+ +E + +NV ++ + T ++ LN+ +L +TLVLT
Sbjct: 207 ARYRRWG----DSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLT 262
Query: 250 PSTVDFL 256
TV FL
Sbjct: 263 LPTVAFL 269
>ASPGD|ASPL0000008992 [details] [associations]
symbol:AN6843 species:162425 "Emericella nidulans"
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
EMBL:BN001301 GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HOGENOM:HOG000176814 OMA:TASTKWR EnsemblFungi:CADANIAT00007641
Uniprot:C8V2I4
Length = 287
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 68/227 (29%), Positives = 114/227 (50%)
Query: 37 INLPPKPLIVSSQLASPLPIL----SF-TGEKIGETYLDLKSAAPDTARAVVHRALITDM 91
+N+PP + ++ A P P+L SF T E + + ++HRA++ +
Sbjct: 45 VNVPPSREELLAKWA-PKPVLATTYSFPTMEPVQFVEYARNHLMMPLRKDILHRAVVYEG 103
Query: 92 QNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKI 151
R+GTAST RG+V G RK Y+QK TGRAR G ++P+R GGGV FGP PRD+S ++
Sbjct: 104 DMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGGGVAFGPHPRDFSTEL 163
Query: 152 NKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM---RRWGLDPKQKATF 208
+K I+++ G T FI+ + RWG + ++T
Sbjct: 164 PRKIYDQAWRIALSYRYRRGQLIIIDNEIG-IPEDATPYFIKEIFKFNRWGRE-FGRSTL 221
Query: 209 LVMEVSENVEKSSRNIGT-LKMLTPRTLNLFDILDAETLVLTPSTVD 254
+ V E + ++ R++G K+L +++ D+L+ L++ +D
Sbjct: 222 ITDRVHEELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALD 268
>TIGR_CMR|SO_0232 [details] [associations]
symbol:SO_0232 "ribosomal protein L4" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 ProtClustDB:PRK05319 HAMAP:MF_01328_B
HOGENOM:HOG000248766 RefSeq:NP_715872.1 ProteinModelPortal:Q8EK67
SMR:Q8EK67 PRIDE:Q8EK67 GeneID:1168115 KEGG:son:SO_0232
PATRIC:23520157 OMA:AHNIVIS Uniprot:Q8EK67
Length = 201
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 59/177 (33%), Positives = 89/177 (50%)
Query: 77 DTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGG 136
D A+VH+ ++ N R+GT + TR EV G G+KP+ QK TGRAR G + P+ GG
Sbjct: 22 DFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAGGVKGPIWRGG 81
Query: 137 GVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 196
GV F K +D S K+NKK R + +VVE F E PKTKE ++
Sbjct: 82 GVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQDRLVVVESFS--VEAPKTKELKAKLK 139
Query: 197 RWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 253
L+ + EV EN+ ++RN+ + + L+ ++ T+++T V
Sbjct: 140 AMNLED---VLIVTSEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNTVLVTADAV 193
>UNIPROTKB|K7ES61 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B HGNC:HGNC:14276
Ensembl:ENST00000592514 Uniprot:K7ES61
Length = 300
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 63/204 (30%), Positives = 101/204 (49%)
Query: 59 FTGEKIG--ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYS 116
F E++G + + D+ + AP ++H+ + KR A T TR EVRGGGRKP+
Sbjct: 72 FEQERVGLADLHPDVFATAPRLD--ILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWP 129
Query: 117 QKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIV 175
QK TGRAR GS R+PL GGGV GP+ P + + K + L ++ +
Sbjct: 130 QKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHI 189
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
++ + P+ + RRWG D E+ +++ +++ + T ++ L
Sbjct: 190 MDSLELPTGDPQYLTELAHYRRWG-DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGL 248
Query: 236 NLFDILDAETLVLTPSTVDFLNGR 259
N+ +L +TLVLT TV FL +
Sbjct: 249 NVHSMLKHQTLVLTLPTVAFLEDK 272
>UNIPROTKB|Q9BYD3 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AB049635 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH471106 EMBL:AC011511 eggNOG:COG0088
HOGENOM:HOG000248767 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV
CTD:51073 HOVERGEN:HBG083638 OrthoDB:EOG4XKV7V EMBL:AF132962
EMBL:BC000756 EMBL:BC009858 EMBL:AY007152 IPI:IPI00023334
IPI:IPI00107137 RefSeq:NP_057040.2 RefSeq:NP_666499.1
RefSeq:NP_666500.1 UniGene:Hs.279652 ProteinModelPortal:Q9BYD3
SMR:Q9BYD3 IntAct:Q9BYD3 MINT:MINT-1389069 STRING:Q9BYD3
PhosphoSite:Q9BYD3 DMDM:74733471 PaxDb:Q9BYD3 PRIDE:Q9BYD3
Ensembl:ENST00000253099 Ensembl:ENST00000307422
Ensembl:ENST00000393733 GeneID:51073 KEGG:hsa:51073 UCSC:uc002mnm.3
UCSC:uc002mno.3 GeneCards:GC19P010362 HGNC:HGNC:14276 HPA:HPA051261
MIM:611823 neXtProt:NX_Q9BYD3 PharmGKB:PA30971 InParanoid:Q9BYD3
PhylomeDB:Q9BYD3 ChiTaRS:MRPL4 GenomeRNAi:51073 NextBio:53691
Bgee:Q9BYD3 CleanEx:HS_MRPL4 Genevestigator:Q9BYD3
GermOnline:ENSG00000105364 Uniprot:Q9BYD3
Length = 311
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 63/204 (30%), Positives = 101/204 (49%)
Query: 59 FTGEKIG--ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYS 116
F E++G + + D+ + AP ++H+ + KR A T TR EVRGGGRKP+
Sbjct: 72 FEQERVGLADLHPDVFATAPRLD--ILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWP 129
Query: 117 QKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIV 175
QK TGRAR GS R+PL GGGV GP+ P + + K + L ++ +
Sbjct: 130 QKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHI 189
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
++ + P+ + RRWG D E+ +++ +++ + T ++ L
Sbjct: 190 MDSLELPTGDPQYLTELAHYRRWG-DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGL 248
Query: 236 NLFDILDAETLVLTPSTVDFLNGR 259
N+ +L +TLVLT TV FL +
Sbjct: 249 NVHSMLKHQTLVLTLPTVAFLEDK 272
>UNIPROTKB|Q9KNY5 [details] [associations]
symbol:rplD "50S ribosomal protein L4" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 GO:GO:0006417 GO:GO:0006355 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 GO:GO:0006353 eggNOG:COG0088 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B OMA:AHNIVIS PIR:E82059 RefSeq:NP_232223.1
ProteinModelPortal:Q9KNY5 SMR:Q9KNY5 DNASU:2615612 GeneID:2615612
KEGG:vch:VC2595 PATRIC:20084216 Uniprot:Q9KNY5
Length = 200
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 58/173 (33%), Positives = 90/173 (52%)
Query: 81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
A+VH+ ++ R+GT + TR EV GGG KP+ QK TGRAR G+ R+P+ GGV F
Sbjct: 25 ALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTF 84
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 200
KP+D S K+NKK R E IVVE F E PKTK + ++ L
Sbjct: 85 AAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFS--VEAPKTKALVAKLKELEL 142
Query: 201 DPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 253
+ + EV EN+ ++RN+ + + ++ ++ + +++T + V
Sbjct: 143 ND---VLIVTGEVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAV 192
>TIGR_CMR|VC_2595 [details] [associations]
symbol:VC_2595 "ribosomal protein L4" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006417
GO:GO:0006355 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0006353
eggNOG:COG0088 KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
ProtClustDB:PRK05319 HAMAP:MF_01328_B OMA:AHNIVIS PIR:E82059
RefSeq:NP_232223.1 ProteinModelPortal:Q9KNY5 SMR:Q9KNY5
DNASU:2615612 GeneID:2615612 KEGG:vch:VC2595 PATRIC:20084216
Uniprot:Q9KNY5
Length = 200
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 58/173 (33%), Positives = 90/173 (52%)
Query: 81 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
A+VH+ ++ R+GT + TR EV GGG KP+ QK TGRAR G+ R+P+ GGV F
Sbjct: 25 ALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTF 84
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 200
KP+D S K+NKK R E IVVE F E PKTK + ++ L
Sbjct: 85 AAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFS--VEAPKTKALVAKLKELEL 142
Query: 201 DPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 253
+ + EV EN+ ++RN+ + + ++ ++ + +++T + V
Sbjct: 143 ND---VLIVTGEVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAV 192
>UNIPROTKB|P60723 [details] [associations]
symbol:rplD species:83333 "Escherichia coli K-12"
[GO:0030371 "translation repressor activity" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0046677 "response to antibiotic" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0030371 GO:GO:0006412 GO:GO:0046677
EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0006353
PDB:2VHM PDBsum:2VHM PDB:2RDO PDBsum:2RDO eggNOG:COG0088 KO:K02926
OMA:FDILNAN Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 PDB:3J0T
PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS
PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12
PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6
PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T
PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE
PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1
PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B
PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20
PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS
PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0
PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX EMBL:X02613 ProtClustDB:PRK05319
HAMAP:MF_01328_B HOGENOM:HOG000248766 PIR:C23129 RefSeq:NP_417778.1
RefSeq:YP_492113.1 ProteinModelPortal:P60723 SMR:P60723
DIP:DIP-35791N IntAct:P60723 MINT:MINT-1219709 PaxDb:P60723
PRIDE:P60723 EnsemblBacteria:EBESCT00000004275
EnsemblBacteria:EBESCT00000015064 GeneID:12932297 GeneID:947818
KEGG:ecj:Y75_p3857 KEGG:eco:b3319 PATRIC:32122070 EchoBASE:EB0860
EcoGene:EG10867 BioCyc:EcoCyc:EG10867-MONOMER
BioCyc:ECOL316407:JW3281-MONOMER ChEMBL:CHEMBL1931
EvolutionaryTrace:P60723 Genevestigator:P60723 Uniprot:P60723
Length = 201
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/177 (31%), Positives = 91/177 (51%)
Query: 77 DTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGG 136
D A+VH+ ++ R+GT + TR EV G G+KP+ QK TGRAR GS ++P+ G
Sbjct: 22 DFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSG 81
Query: 137 GVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 196
GV F +P+D S K+NKK R + IVVE+F E PKTK + ++
Sbjct: 82 GVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFS--VEAPKTKLLAQKLK 139
Query: 197 RWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 253
L+ + E+ EN+ ++RN+ + + ++ ++ + +V+T V
Sbjct: 140 DMALED---VLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAV 193
>UNIPROTKB|F1S3J8 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B GeneTree:ENSGT00390000014512
OMA:VYGLNVY EMBL:CU657936 RefSeq:XP_003123269.2
Ensembl:ENSSSCT00000014920 GeneID:100511369 KEGG:ssc:100511369
Uniprot:F1S3J8
Length = 294
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 76/242 (31%), Positives = 115/242 (47%)
Query: 29 QLAKPNSLINLPPKPLIVSS-QLASPL---PIL----SFTG---EKIGETYL--DLKSAA 75
Q KP S+ +L +P ++ +L P P+ S G E++G T L D+ S A
Sbjct: 31 QAEKPESVASLGLQPPVLRKCELPVPAHRRPVQAWIESLRGYEQERVGLTELHPDVFSTA 90
Query: 76 PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPG 135
P ++H+ I KR A T TR EVRGGGRKP+ QK +GRAR GS R+P+ G
Sbjct: 91 PRLD--ILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWVQKGSGRARHGSIRSPIWRG 148
Query: 136 GGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEA 194
GGV GP+ P + + K + ++ +V+ + P+ +
Sbjct: 149 GGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTADPQYLIELAR 208
Query: 195 MRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 254
RRWG D ++ +NV ++ + T ++ LN+ +L +TLVLT TV
Sbjct: 209 YRRWG-DSVLLVDLEHEDMPQNVVAATSGLKTFNLVPAVGLNVHSMLKHQTLVLTLPTVA 267
Query: 255 FL 256
FL
Sbjct: 268 FL 269
>UNIPROTKB|F1PB94 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:AAEX03012426 RefSeq:XP_854013.1 Ensembl:ENSCAFT00000028364
GeneID:611273 KEGG:cfa:611273 Uniprot:F1PB94
Length = 294
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 68/242 (28%), Positives = 115/242 (47%)
Query: 29 QLAKPNSLINL-PPKPLIVSSQLASPLP-------ILSFTG---EKIG--ETYLDLKSAA 75
Q AKP ++ + P +P++ +L P P + S G E++G E + ++ S A
Sbjct: 31 QAAKPEAVGSAGPQEPVLRRCELPVPAPRRPVQAWVESLRGYEQERVGLAELHPEVFSTA 90
Query: 76 PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPG 135
P ++H+ I KR A T TR EV+GGGRKP+ QK +GR+R GS R+P+ G
Sbjct: 91 PRLD--ILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKPWPQKGSGRSRHGSIRSPIWRG 148
Query: 136 GGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEA 194
GG+ GP+ P + + K + ++ +V+ + P+ +
Sbjct: 149 GGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELAR 208
Query: 195 MRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 254
R WG D + +N+ ++ + T ++ LN++ +L +TLVLT T+
Sbjct: 209 YRHWG-DSVLLVDLAYENMPQNIVAATTGLKTFNLIPAVGLNVYSMLKHQTLVLTLQTLA 267
Query: 255 FL 256
FL
Sbjct: 268 FL 269
>MGI|MGI:2137210 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 MGI:MGI:2137210
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:AB049634
EMBL:AB041599 EMBL:AK002464 EMBL:BC037064 EMBL:BC039983
EMBL:BC061095 IPI:IPI00121359 RefSeq:NP_075656.2 UniGene:Mm.427576
ProteinModelPortal:Q9DCU6 SMR:Q9DCU6 STRING:Q9DCU6
PhosphoSite:Q9DCU6 PaxDb:Q9DCU6 PRIDE:Q9DCU6
Ensembl:ENSMUST00000003386 GeneID:66163 KEGG:mmu:66163
UCSC:uc009oju.1 InParanoid:Q9DCU6 NextBio:320818 Bgee:Q9DCU6
CleanEx:MM_MRPL4 Genevestigator:Q9DCU6
GermOnline:ENSMUSG00000003299 Uniprot:Q9DCU6
Length = 294
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 70/247 (28%), Positives = 117/247 (47%)
Query: 26 KPIQLAKPNSLINLPPKPLIVSSQLASPL---PILS-------FTGEKIG--ETYLDLKS 73
+P ++++P L P++ +L P+ P+ + F E+IG E + D+ +
Sbjct: 30 RPAEISEPRDSAGLLD-PVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFA 88
Query: 74 AAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLR 133
AP +VH+ I +R A+T TR EV GGGRKP+ QK +GRAR GS R+PL
Sbjct: 89 TAPRLD--IVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLW 146
Query: 134 PGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFI 192
GGGV GP+ P + + K + L ++ +V+ + P+ +
Sbjct: 147 RGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTEL 206
Query: 193 EAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPST 252
R WG E+ +NV ++ + + ++ LN++ +L +TLVLT +
Sbjct: 207 AQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPS 265
Query: 253 VDFLNGR 259
V FL +
Sbjct: 266 VAFLEDK 272
>RGD|1311777 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 RGD:1311777 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH473993 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
OrthoDB:EOG4XKV7V IPI:IPI00201814 RefSeq:NP_001102224.1
UniGene:Rn.13113 Ensembl:ENSRNOT00000049706 GeneID:363023
KEGG:rno:363023 UCSC:RGD:1311777 NextBio:682165 Uniprot:D4A131
Length = 294
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 67/247 (27%), Positives = 113/247 (45%)
Query: 26 KPIQLAKPNSLINLPPKPLIVSSQLASPLP----------ILSFTGEKIG--ETYLDLKS 73
+P ++++P L P++ +L P P + F E+IG E + D+ +
Sbjct: 30 RPAEISEPGDSAGLLD-PVLRKCELPIPAPRRPVQAWVESLRGFEQERIGLAELHPDVFA 88
Query: 74 AAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLR 133
P ++H+ + KR A T TR EV GGGRKP+ QK +GRAR GS R+P+
Sbjct: 89 TTPRLD--ILHQVAVWQRNFKRISYAKTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPIW 146
Query: 134 PGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFI 192
GGGV GP+ P + + K + L ++ +V+ + P+ +
Sbjct: 147 RGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTEL 206
Query: 193 EAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPST 252
R WG E+ +NV ++ + + ++ LN++ +L +TLVLT +
Sbjct: 207 AQYRHWG-SSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPS 265
Query: 253 VDFLNGR 259
V FL +
Sbjct: 266 VAFLEDK 272
>TAIR|locus:2061659 [details] [associations]
symbol:AT2G20060 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP002685
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC006081 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 HAMAP:MF_01328_B OMA:PWNQKGT
EMBL:AY072419 EMBL:BT002156 IPI:IPI00545678 PIR:E84584
RefSeq:NP_565463.1 UniGene:At.39751 HSSP:P38516
ProteinModelPortal:Q8VY61 SMR:Q8VY61 IntAct:Q8VY61 STRING:Q8VY61
PRIDE:Q8VY61 EnsemblPlants:AT2G20060.1 GeneID:816525
KEGG:ath:AT2G20060 TAIR:At2g20060 InParanoid:Q8VY61
PhylomeDB:Q8VY61 ProtClustDB:CLSN2688266 ArrayExpress:Q8VY61
Genevestigator:Q8VY61 Uniprot:Q8VY61
Length = 300
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 60/206 (29%), Positives = 108/206 (52%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTA--RAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+P+ +F E+ G ++ L D + ++H + + +++GT ST T EV G G
Sbjct: 91 IPVTNFQNEEKG--FMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTG 148
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE 171
RKP++QK TGRAR G+ R P GG V+ GPKPR +IK+NK+ +RL
Sbjct: 149 RKPWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEG 208
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME---VSENVEKSSRNIGTLK 228
+V ++ KTK + + ++ +K LV+E + E ++ +++N+ +
Sbjct: 209 KLLVFDDLG--LPTHKTKNIVNYYNQ--MENTKKV--LVVEGGPIDEKLKLATQNLHYVN 262
Query: 229 MLTPRTLNLFDILDAETLVLTPSTVD 254
++ LN++ IL +TL+++ V+
Sbjct: 263 IIPSIGLNVYSILLHDTLLMSRDAVN 288
>ZFIN|ZDB-GENE-050522-388 [details] [associations]
symbol:zgmrpl4 "mitochondrial ribosomal protein L4"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
ZFIN:ZDB-GENE-050522-388 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:BC095145
IPI:IPI00505153 RefSeq:NP_001018572.1 UniGene:Dr.14878
STRING:Q503X2 Ensembl:ENSDART00000081765 GeneID:553771
KEGG:dre:553771 CTD:553771 InParanoid:Q503X2 NextBio:20880493
Bgee:Q503X2 Uniprot:Q503X2
Length = 302
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 57/180 (31%), Positives = 93/180 (51%)
Query: 82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFG 141
++H + KR A+ TR EVRGGGRKP+ QK+TGRAR GS R+PL GGG++ G
Sbjct: 104 ILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGIIHG 163
Query: 142 PK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 200
P+ P + + K + + +V+ + P+ + + R+WG
Sbjct: 164 PRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHRQWG- 222
Query: 201 DPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFL 256
D + L+++V E N+ K++ ++ T+ ++ LN+ +L E+LVLT V FL
Sbjct: 223 D-----SVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFL 277
>TIGR_CMR|APH_0281 [details] [associations]
symbol:APH_0281 "ribosomal protein L4" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 RefSeq:YP_504893.1 ProteinModelPortal:Q2GL58
STRING:Q2GL58 GeneID:3931236 KEGG:aph:APH_0281 PATRIC:20949136
OMA:GKAHGPV ProtClustDB:PRK05319 BioCyc:APHA212042:GHPM-311-MONOMER
HAMAP:MF_01328_B Uniprot:Q2GL58
Length = 208
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 61/205 (29%), Positives = 96/205 (46%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I++ E +G L+ + + R V+ + + +R GT ++ G KPY
Sbjct: 5 IVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAKPY 64
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIV 175
QK TGRAR+GS R+P GG V+FGP PR +NKK +RL +V
Sbjct: 65 RQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKLVV 124
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME-VSENVEKSSRNIGTLKMLTPRT 234
++ D + KT + A +G + +V E E V ++ RN+ + +L
Sbjct: 125 LDSLD--VDLKKTAD---AKGVFGNFAGHSSYLVVSESCKEEVVRACRNLRGVDLLKCVG 179
Query: 235 LNLFDILDAETLVLTPSTVDFLNGR 259
+N+ DIL + ++LT TV L GR
Sbjct: 180 INVLDILKHDCVILTVDTVKSLEGR 204
>TIGR_CMR|SPO_3824 [details] [associations]
symbol:SPO_3824 "ribosomal protein L4" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_169012.1 ProteinModelPortal:Q5LLU7
PRIDE:Q5LLU7 GeneID:3195311 KEGG:sil:SPO3824 PATRIC:23381149
Uniprot:Q5LLU7
Length = 205
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 61/206 (29%), Positives = 92/206 (44%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
L ++ G K G LD + ++HR + N + GT LT+ EV +K
Sbjct: 3 LDVIKLDGTKAGNIDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYSTKK 62
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENT 173
Y QK TG AR GS ++P GGV GP PR + KK ++L
Sbjct: 63 IYRQKGTGGARHGSRKSPTFRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGEL 122
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
+V+E + + KT + + G K+ V+E +++RNI L +L
Sbjct: 123 VVIENAEAE---GKTAALAKQVANLGW--KRALVIDGAAVNEGFARAARNIEGLDILPSM 177
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGR 259
N++DIL +TLVLT + V+ L R
Sbjct: 178 GANVYDILKRDTLVLTKAAVEALEAR 203
>TIGR_CMR|ECH_0410 [details] [associations]
symbol:ECH_0410 "ribosomal protein L4" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_507228.1 ProteinModelPortal:Q2GH55
STRING:Q2GH55 GeneID:3927219 KEGG:ech:ECH_0410 PATRIC:20576297
BioCyc:ECHA205920:GJNR-411-MONOMER Uniprot:Q2GH55
Length = 205
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 55/177 (31%), Positives = 90/177 (50%)
Query: 87 LITDMQ-NKRR-GTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKP 144
++ D Q +KRR GT T G++ G KP+ QK TGRAR+GS R+P GG V+FGP
Sbjct: 34 MVVDWQLSKRRAGTHKAKTIGDISGTTAKPHRQKHTGRARQGSLRSPQFRGGAVIFGPVV 93
Query: 145 RDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQ 204
R + +NKK + L ++++ D F KT + ++ ++ + +
Sbjct: 94 RSHAYSLNKKVRNLGLKVALSLKNSCNKLLILDSIDVNFV--KTTQVLQFIKNF-----E 146
Query: 205 KATFLVMEVSEN--VEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259
+FL+++ N V S RN+ + +L N+ DIL + ++LT V +L R
Sbjct: 147 HKSFLIIDKDYNKSVVCSCRNLHNVTLLKQIGTNVLDILRHDCIILTVGAVKYLEER 203
>FB|FBgn0001995 [details] [associations]
symbol:mRpL4 "mitochondrial ribosomal protein L4"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AE014134 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 CTD:51073
GeneTree:ENSGT00390000014512 OMA:VYGLNVY EMBL:AY061407
RefSeq:NP_524939.1 UniGene:Dm.1535 SMR:Q9V3D0 IntAct:Q9V3D0
STRING:Q9V3D0 EnsemblMetazoa:FBtr0080843 GeneID:49425
KEGG:dme:Dmel_CG5818 UCSC:CG5818-RA FlyBase:FBgn0001995
InParanoid:Q9V3D0 OrthoDB:EOG43FFCQ GenomeRNAi:49425 NextBio:839752
Uniprot:Q9V3D0
Length = 296
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 73/244 (29%), Positives = 111/244 (45%)
Query: 37 INLPP---KPLIVSSQLASPLPILSFTGEK--------IGETYLDLKSAAPDTARAVVHR 85
+ PP PLI+ LP+ T + + E + L PD A
Sbjct: 37 VGAPPATRSPLILPQDYTDCLPVSRNTARQAWIENTDAVAERKVGLIELHPDVFAAQPRV 96
Query: 86 ALI---TDMQNKRR--GTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVF 140
+I + Q+K R A T TR EVRGGGRKP+ QK GRAR GS R+P+ GGGVV
Sbjct: 97 DIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLKGGGVVH 156
Query: 141 GPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTI-VVEEFD-GKFERPKTKEFIEAMRRW 198
GP+ + KR+ ++ + +++ D + K+ I A R W
Sbjct: 157 GPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLI-AERNW 215
Query: 199 GLDPKQKATFLVME---VSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDF 255
G P + +V E N+ ++S ++G + ++ LN++ +L +TLVLT + V
Sbjct: 216 G--P---SVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKH 270
Query: 256 LNGR 259
L R
Sbjct: 271 LEQR 274
>POMBASE|SPBC2D10.08c [details] [associations]
symbol:SPBC2D10.08c "mitochondrial ribosomal protein
subunit Yml6 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
PomBase:SPBC2D10.08c EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0088
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 PIR:T40111 RefSeq:NP_596227.1
ProteinModelPortal:O74801 STRING:O74801 EnsemblFungi:SPBC2D10.08c.1
GeneID:2540449 KEGG:spo:SPBC2D10.08c HOGENOM:HOG000176814
OMA:TILENPI OrthoDB:EOG41G6DC NextBio:20801576 Uniprot:O74801
Length = 261
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 47/132 (35%), Positives = 70/132 (53%)
Query: 80 RAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVV 139
R ++HRA+I + N R+GTAS+ R E+ GRK Y QK TG AR G +P+R GG
Sbjct: 35 RDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAKS 94
Query: 140 FGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 199
GPKPRD+S K+ + L N + + E +PKT+ +E +++
Sbjct: 95 HGPKPRDFSTKLQTQVYNLAMRIALSTRFI-NNELTILENPINLSQPKTRILLEVLKQHK 153
Query: 200 LDPKQ-KATFLV 210
L + KA F++
Sbjct: 154 LGHEYGKALFVL 165
>DICTYBASE|DDB_G0283275 [details] [associations]
symbol:DDB_G0283275 "ribosomal protein L4P family
protein" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
dictyBase:DDB_G0283275 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000052 eggNOG:COG0088 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 RefSeq:XP_639132.1 ProteinModelPortal:Q54RB5
STRING:Q54RB5 EnsemblProtists:DDB0185424 GeneID:8624003
KEGG:ddi:DDB_G0283275 InParanoid:Q54RB5 OMA:ANTKTRG
ProtClustDB:CLSZ2430382 Uniprot:Q54RB5
Length = 258
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 55/180 (30%), Positives = 87/180 (48%)
Query: 82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFG 141
++HR + ++GT L G + +KP QK +G AR+G+N + GG F
Sbjct: 81 LLHRMVRYQRAKSQQGTHQALNMGRMERTNKKPTRQKGSGNARKGTNHSVHFRGGARTFA 140
Query: 142 PKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRR-WGL 200
P R + + +K ++L +VV+ F+ E KTKE + + + WG
Sbjct: 141 PTMRSHAHDLPRKVRKLCLKVALSTKLAQNKLVVVDGFN--LESHKTKELLSKLPKDWG- 197
Query: 201 DPKQKATFLV-MEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259
T LV E+S+ + KSS N+ + L LN++ IL +TLVLT S+V+ L R
Sbjct: 198 -----RTLLVDSEISDFLNKSSLNVQKIDTLPQLGLNVYTILQNDTLVLTKSSVEALQAR 252
>UNIPROTKB|K7ELQ0 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HGNC:HGNC:14276 Ensembl:ENST00000588502
Uniprot:K7ELQ0
Length = 220
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 48/144 (33%), Positives = 72/144 (50%)
Query: 59 FTGEKIG--ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYS 116
F E++G + + D+ + AP ++H+ + KR A T TR EVRGGGRKP+
Sbjct: 71 FEQERVGLADLHPDVFATAPRLD--ILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWP 128
Query: 117 QKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKEKRLXXXXXXXXXXXXENTIV 175
QK TGRAR GS R+PL GGGV GP+ P + + K + L ++ +
Sbjct: 129 QKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHI 188
Query: 176 VEEFDGKFERPKTKEFIEAMRRWG 199
++ + P+ + RRWG
Sbjct: 189 MDSLELPTGDPQYLTELAHYRRWG 212
>TIGR_CMR|NSE_0267 [details] [associations]
symbol:NSE_0267 "ribosomal protein L4" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_506158.1 ProteinModelPortal:Q2GED8
STRING:Q2GED8 GeneID:3931993 KEGG:nse:NSE_0267 PATRIC:22680625
OMA:WGSSANV BioCyc:NSEN222891:GHFU-294-MONOMER Uniprot:Q2GED8
Length = 214
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 49/167 (29%), Positives = 79/167 (47%)
Query: 91 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIK 150
+ +R GT T EV G RKPY QK TGRAR+GS R P GG+VFGP R
Sbjct: 44 LAKRRAGTHKTKGISEVSGTTRKPYRQKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFS 103
Query: 151 INKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG-LDPKQKATFL 209
+NKK + L V+E + K ++ L +K +
Sbjct: 104 VNKKVRSLALRSALSMRFAEGRLFVLES--SRLGESKAATLLKWFASNAELSVGKKFLIV 161
Query: 210 VMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFL 256
E +E + +++ N+ +K+L + N++D++ + ++L ++VD L
Sbjct: 162 TEEKNEGLLRAASNLHWVKVLWGSSANVYDVVLHDFVLLEKASVDVL 208
>UNIPROTKB|K7EJ73 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590702 Uniprot:K7EJ73
Length = 119
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 41/107 (38%), Positives = 55/107 (51%)
Query: 94 KRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKIN 152
KR A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV GP+ P + +
Sbjct: 5 KRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLP 64
Query: 153 KKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 199
K + L ++ +++ + P+ + RRWG
Sbjct: 65 MKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 111
>TIGR_CMR|CJE_1874 [details] [associations]
symbol:CJE_1874 "ribosomal protein L4" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767
KO:K02926 Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_179844.1 ProteinModelPortal:Q5HS91
STRING:Q5HS91 GeneID:3232501 KEGG:cjr:CJE1874 PATRIC:20045580
OMA:ISESIFN BioCyc:CJEJ195099:GJC0-1913-MONOMER Uniprot:Q5HS91
Length = 204
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 56/205 (27%), Positives = 95/205 (46%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
S + +L+ EK GE LDL S + ++ + + + + R TA T R +V GGG
Sbjct: 2 SKVVVLNDKLEKAGE--LDLPSKYAEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGGG 59
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGP-KPRDWSIKINKKEKRLXXXXXXXXXXXX 170
+KP+ QK G AR GS RT + GG V FGP R++ K+NKK+KRL
Sbjct: 60 KKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAAK 119
Query: 171 ENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV-SENVEKSSRNIGTLKM 229
+ E KTK+ +++ G+ K +V ++ E + RN+ +
Sbjct: 120 GVLFTADSL--AIESGKTKDANAVIKKLGV----KDALIVKDLLDEKTLLAYRNLANCYV 173
Query: 230 LTPRTLNLFDILDAETLVLTPSTVD 254
+ +N + + +++ S ++
Sbjct: 174 VDVTEVNAYLVSVFNAVIMEKSALE 198
>UNIPROTKB|K7ELF1 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590150 Uniprot:K7ELF1
Length = 163
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 59 FTGEKIG--ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYS 116
F E++G + + D+ + AP ++H+ + KR A T TR EVRGGGRKP+
Sbjct: 83 FEQERVGLADLHPDVFATAPRLD--ILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWP 140
Query: 117 QKKTGRARRGSNRTPLRPGGGV 138
QK TGRAR GS R+PL GGGV
Sbjct: 141 QKGTGRARHGSIRSPLWRGGGV 162
>WB|WBGene00020717 [details] [associations]
symbol:mrpl-4 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006412 GO:GO:0040011 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:FO081628 PIR:T32225 RefSeq:NP_505181.1
ProteinModelPortal:O17005 SMR:O17005 DIP:DIP-25082N IntAct:O17005
MINT:MINT-1044291 STRING:O17005 PaxDb:O17005
EnsemblMetazoa:T23B12.2 GeneID:179230 KEGG:cel:CELE_T23B12.2
UCSC:T23B12.2 CTD:179230 WormBase:T23B12.2 InParanoid:O17005
NextBio:904478 Uniprot:O17005
Length = 299
Score = 144 (55.7 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 57/228 (25%), Positives = 100/228 (43%)
Query: 40 PPKPLIVSSQL-ASPLPILSFTGEKIG--ETYLDLKSAAPDTARAVVHRALITDMQNKRR 96
P P I + Q S L + EK+G + + D+ +P ++HR L +
Sbjct: 41 PENPFIKTPQAWVSNLDTIE--DEKLGLVDLHPDIFRTSPRID--ILHRNLTWQSVYRNV 96
Query: 97 GTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKE 155
LT+ E+ GGGRKP+ QKKTGRA GS R+P GG G + PR W +
Sbjct: 97 QMTKMLTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAV 156
Query: 156 KRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM--RRWGLDPKQKATFL--VM 211
+ ++ +V++ + K +I+ R +G F+
Sbjct: 157 RIQGLCVALTLKHTQDDLHIVDKIQN-LQNGDPKYWIDLCEARNYGYS----VLFVDDCD 211
Query: 212 EVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 259
E+S + ++ + + L ++ LN F ++ +T+VL+ S ++ + R
Sbjct: 212 EISGGLAEAQQALPWLNVMPVYGLNCFSLMKYDTIVLSRSALERVEER 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 288 232 0.00085 113 3 11 22 0.45 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 565 (60 KB)
Total size of DFA: 149 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.50u 0.10s 21.60t Elapsed: 00:00:01
Total cpu time: 21.50u 0.10s 21.60t Elapsed: 00:00:01
Start: Sat May 11 07:45:03 2013 End: Sat May 11 07:45:04 2013