BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023032
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana
GN=RPL4 PE=1 SV=2
Length = 282
Score = 340 bits (872), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 175/223 (78%), Positives = 202/223 (90%), Gaps = 2/223 (0%)
Query: 42 KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAST 101
KPL VSSQLA+ LPILSF GEK+GETYLDLK+A DTARAVVHRA++TD+ NKRRGTAST
Sbjct: 43 KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTAST 101
Query: 102 LTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAIS 161
LTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+LAIS
Sbjct: 102 LTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAIS 161
Query: 162 TAIASAAAAE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKS 220
TA++SAA+AE IVVEEF KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KS
Sbjct: 162 TALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKS 221
Query: 221 SRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 263
SRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV+
Sbjct: 222 SRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGVD 264
>sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum
GN=RPL4 PE=2 SV=1
Length = 282
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/216 (76%), Positives = 191/216 (88%), Gaps = 3/216 (1%)
Query: 46 VSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRG 105
+ S++A+ +PILSF G ++G T L+LKSA DTARAVVHR L TD++N+RRGTASTLTR
Sbjct: 41 IRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRS 99
Query: 106 EVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIA 165
EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRLAISTA++
Sbjct: 100 EVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALS 159
Query: 166 SAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIG 225
S A+ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV SSRNIG
Sbjct: 160 S--ASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIG 217
Query: 226 TLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261
TLKMLTPRTLNLFDILD+E LVLT S VDFLN RYG
Sbjct: 218 TLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253
>sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea
GN=RPL4 PE=1 SV=1
Length = 293
Score = 322 bits (826), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/211 (72%), Positives = 182/211 (86%), Gaps = 2/211 (0%)
Query: 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGR 112
PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGR
Sbjct: 54 PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGR 113
Query: 113 KPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAEN 172
KPY QKKTGRARRGS +PLRPGGGV+FGPKPRDW+IK+NKKE+RLA+STAIASA N
Sbjct: 114 KPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--N 171
Query: 173 TIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTP 232
+ VVEEF FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTP
Sbjct: 172 SFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTP 231
Query: 233 RTLNLFDILDAETLVLTPSTVDFLNGRYGVE 263
R+LNLFD+L+AE LV T T+ +LN RYGV+
Sbjct: 232 RSLNLFDVLNAEKLVFTEGTIQYLNQRYGVD 262
>sp|Q8DMN0|RL4_THEEB 50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplD PE=3 SV=1
Length = 210
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 141/203 (69%), Gaps = 2/203 (0%)
Query: 59 FTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQK 118
+ G GE LDL +A P+TA +VHRAL+ + N R+GT ST TR EVRGGGRKP+ QK
Sbjct: 9 WQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQK 68
Query: 119 KTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEE 178
TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RLA+ TA+ S E+ IVV++
Sbjct: 69 GTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMS--RVEDLIVVQD 126
Query: 179 FDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLF 238
F RPKTKE + A++RWG++P+QK L +++E V S+RN+ TLK+L LN+F
Sbjct: 127 FADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVF 186
Query: 239 DILDAETLVLTPSTVDFLNGRYG 261
D+L A+ +V T + + YG
Sbjct: 187 DLLYADRIVATTGAIAKIQEVYG 209
>sp|B8HMQ5|RL4_CYAP4 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rplD PE=3 SV=1
Length = 210
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 142/206 (68%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I + G ++GET L+L+ A + A +VHRAL M N R+GTAST TR EVRGGGRKP+
Sbjct: 6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GSNR+PL GGGV+FGPKPRD+SIK+N KE+RLA+ TA+ S +++ IV
Sbjct: 66 RQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALIS--RSDSLIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE+F K RPKTKE A+ RWG+ P K +V + + + S+RNI T+K++ +L
Sbjct: 124 VEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A+ +V T + + YG
Sbjct: 184 NVFDLLNADWIVATVEALGKIQEVYG 209
>sp|Q110A8|RL4_TRIEI 50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplD PE=3 SV=1
Length = 212
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Query: 58 SFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQ 117
++ GE++G+ L+L+ A ++A +VHR+L M N R+GTAST TR EVRGGGRKP+ Q
Sbjct: 8 NWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQ 67
Query: 118 KKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVE 177
K TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KEKRLA+STA S +E+ IV+E
Sbjct: 68 KGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRLALSTAFQS--RSEDLIVIE 125
Query: 178 EFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNL 237
+ +F +PKTKE ++A+ RWG+D + K ++ E ENV S RNI LK++ LN+
Sbjct: 126 DLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNLNI 185
Query: 238 FDILDAETLVLTPSTVDFLNGRYGVE 263
+DIL A+ ++ T + + + YG E
Sbjct: 186 YDILAADKIIATVTAIAKIQEVYGNE 211
>sp|B2ITQ4|RL4_NOSP7 50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=rplD PE=3 SV=1
Length = 212
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 144/205 (70%), Gaps = 4/205 (1%)
Query: 58 SFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQ 117
++ GE++GET +L+ A +TA +VHRAL+ + N R+G AST TR EVRGGGRKP+ Q
Sbjct: 8 NWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQ 67
Query: 118 KKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVE 177
K TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RLA+ TA ++ IVVE
Sbjct: 68 KGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRLALRTAF--VGRIDDLIVVE 125
Query: 178 EFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTL 235
EF + RPKTK+ + A+ RWG+ P+ KA ++ E+ ++NV S+RNI LK++ L
Sbjct: 126 EFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQL 185
Query: 236 NLFDILDAETLVLTPSTVDFLNGRY 260
N+FD+L A+ +V+T S ++ + Y
Sbjct: 186 NVFDLLHADKIVVTASALEKIQEVY 210
>sp|P73319|RL4_SYNY3 50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplD PE=3 SV=1
Length = 210
Score = 204 bits (518), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE++G L L+ A + A +VHRAL+ N R+G AS TR EVRGGGRKP+
Sbjct: 6 VKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RLA+ TAIAS A+N +V
Sbjct: 66 KQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTAIAS--RADNMVV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE F +F +PKTKE A+ RWG P+++ ++ E+ ENV S RNI LK+L L
Sbjct: 124 VEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENVFLSGRNIPYLKILRADNL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N++D+L A+T+V T + ++ + YG
Sbjct: 184 NIYDVLVADTIVATATALEKIQEVYG 209
>sp|B7KHY8|RL4_CYAP7 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424)
GN=rplD PE=3 SV=1
Length = 210
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/194 (50%), Positives = 139/194 (71%), Gaps = 2/194 (1%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ G+++G+T L+LK A +TA ++HRA++ + N R+G AST TR EVRGGGRKP+
Sbjct: 6 VKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GSNR+PL GGGV+FGPKPRD+S K+N+KE+RLA+ TA+ S AEN I+
Sbjct: 66 RQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALNS--KAENLII 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE F + +PKTKE A+ RWG+ K K ++ E+ EN+ S+RNI +K++ ++
Sbjct: 124 VENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRADSI 183
Query: 236 NLFDILDAETLVLT 249
N++DIL A LV T
Sbjct: 184 NVYDILSASKLVAT 197
>sp|B7K334|RL4_CYAP8 50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801)
GN=rplD PE=3 SV=1
Length = 211
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 142/205 (69%), Gaps = 2/205 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I ++ GE++G+ L+LK A + A +VHRAL+ N R+GTAST TR EVRGGGRKP+
Sbjct: 6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV FGPKP+D+++K+N+KE+RLA+ TA+ S E+ IV
Sbjct: 66 RQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRLALRTALDS--RIEDLIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE F + +PKTKE + A+ RWG+D QK +V E+++N++ S+RN+ +K+L L
Sbjct: 124 VENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKADGL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRY 260
N++D+L A+ +V T + + Y
Sbjct: 184 NVYDLLVADKIVATAEALSKVQEVY 208
>sp|B0JI02|RL4_MICAN 50S ribosomal protein L4 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplD PE=3 SV=1
Length = 210
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE+ G L+LK+A P+TA+ ++HR +++ + R+G AS+ TR EVRGGGRKP+
Sbjct: 6 VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KEKRLA+ TA+ S A+N IV
Sbjct: 66 RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALIS--QADNFIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE F +F +PKTKE A+ RWG P++K ++ E+ ENV S RNI LK++ +L
Sbjct: 124 VESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N++D++ A+ ++ T + + + YG
Sbjct: 184 NVYDVILADRVIATAAALAKIEEVYG 209
>sp|Q3MFC0|RL4_ANAVT 50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplD PE=3 SV=1
Length = 210
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 141/205 (68%), Gaps = 2/205 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE++G+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+
Sbjct: 6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RLA+ TA+ S ++ I+
Sbjct: 66 RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTALVS--RIDDLIL 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ L
Sbjct: 124 VEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRY 260
N++D+L A+ +V+T S ++ + Y
Sbjct: 184 NVYDLLHADKIVVTTSALEKIQEVY 208
>sp|Q8YPI0|RL4_NOSS1 50S ribosomal protein L4 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplD PE=3 SV=1
Length = 210
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 2/205 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE+IG+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+
Sbjct: 6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RLA+ TA S ++ I+
Sbjct: 66 RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTAFVS--RIDDLIL 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ L
Sbjct: 124 VEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRY 260
N++D+L A+ +V+T S ++ + Y
Sbjct: 184 NVYDLLHADKIVVTTSALEKIQEVY 208
>sp|B0C1D4|RL4_ACAM1 50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC
11017) GN=rplD PE=3 SV=1
Length = 210
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 136/198 (68%), Gaps = 2/198 (1%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE G+ LDLK A + A +VHRAL M N R+GTAS+ TR EVRGGGRKP+
Sbjct: 6 VRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS+R+PL GGGV+FGPKPR +S K+N+KE+RLA+ TA AS AE+ +V
Sbjct: 66 RQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRLALRTAFAS--RAEDLVV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE+F RPKTK+ +EAM RWG++ K ++ + + + S+RN+ LK++ L
Sbjct: 124 VEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTIYLSARNVEKLKLILASNL 183
Query: 236 NLFDILDAETLVLTPSTV 253
N++D+L A+ +V T S +
Sbjct: 184 NVYDLLAADQIVATQSAI 201
>sp|O24690|RL4_SYNP6 50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1
Length = 210
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I + G+ G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+
Sbjct: 6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RLA+ TA+ S +A + +V
Sbjct: 66 KQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTALISRSA--DLVV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V+EF + RPKT++ EA+ RWG++P K + + +NVE S RN+ +K++T L
Sbjct: 124 VQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A+ +V T + ++ + YG
Sbjct: 184 NIFDLLNADRIVSTSAALEKIQEVYG 209
>sp|Q31L08|RL4_SYNE7 50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC
7942) GN=rplD PE=3 SV=1
Length = 210
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I + G+ G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+
Sbjct: 6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RLA+ TA+ S +A + +V
Sbjct: 66 KQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTALISRSA--DLVV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V+EF + RPKT++ EA+ RWG++P K + + +NVE S RN+ +K++T L
Sbjct: 124 VQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A+ +V T + ++ + YG
Sbjct: 184 NIFDLLNADRIVSTSAALEKIQEVYG 209
>sp|A2BYT5|RL4_PROM5 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9515) GN=rplD PE=3 SV=1
Length = 210
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 141/209 (67%), Gaps = 2/209 (0%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ L L + G+K+G+ +DLK A ++ ++HRA++ + N+R+GTASTLTR EVRGGG
Sbjct: 2 TTLETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RLA+ TA+ S +
Sbjct: 62 RKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMS--RVD 119
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
+ VE+F +PKT E I + R G++ +K ++ SE ++KS NI +K++
Sbjct: 120 DIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSEVIKKSINNIAKVKLIA 179
Query: 232 PRTLNLFDILDAETLVLTPSTVDFLNGRY 260
LN+FDIL+A LV+ S ++ + Y
Sbjct: 180 ADQLNVFDILNANKLVIGQSAINKIQEVY 208
>sp|A9BCP6|RL4_PROM4 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9211) GN=rplD PE=3 SV=1
Length = 211
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+L + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VLDWQGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG++FGPKPR +S+ +N+KE+RLA+ TA+ A + ++
Sbjct: 66 KQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRLALRTAL--MARINDLMI 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F + PKT+E +EA+ R+G+ K ++ + SE + +S RNI +K++ L
Sbjct: 124 VQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSEIIIRSVRNIERVKVIGADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A +LV+ + + YG
Sbjct: 184 NVFDLLNANSLVIGEKALSTIKEVYG 209
>sp|Q7UZU8|RL4_PROMP 50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=rplD PE=3 SV=1
Length = 210
Score = 191 bits (484), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 141/209 (67%), Gaps = 2/209 (0%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ L L + G+K G+ +DLK A ++ ++HRA++ + NKR+GTASTLTR EVRGGG
Sbjct: 2 TTLETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RLA+ TA+ S +
Sbjct: 62 RKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISDF 121
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
T VE+F ++PKT E I + R G++ +K ++ S+ ++KS N+ +K++
Sbjct: 122 KT--VEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSDVIKKSINNLEKVKLIA 179
Query: 232 PRTLNLFDILDAETLVLTPSTVDFLNGRY 260
LN+FDIL+A LV+ S ++ + Y
Sbjct: 180 ADQLNVFDILNANKLVIGQSAINKIQEVY 208
>sp|Q7U4J9|RL4_SYNPX 50S ribosomal protein L4 OS=Synechococcus sp. (strain WH8102)
GN=rplD PE=3 SV=1
Length = 211
Score = 190 bits (483), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 136/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 IRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RLA+ TA+ A E+ V
Sbjct: 66 KQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTAL--MARVEDVTV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F E PKTKE +A+ R G+ K ++ E S+ V +S RN+ +K++ L
Sbjct: 124 VKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLIAANQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A LVL + + YG
Sbjct: 184 NVFDLLHANALVLGEDALATIQEVYG 209
>sp|A3PF46|RL4_PROM0 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplD PE=3 SV=1
Length = 210
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 139/209 (66%), Gaps = 2/209 (0%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGG
Sbjct: 2 TTLETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ S +
Sbjct: 62 RKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS-- 119
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
+ VE+F ++PKT + I + R G+ +K ++ S+ ++KS NI +K++
Sbjct: 120 DIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIA 179
Query: 232 PRTLNLFDILDAETLVLTPSTVDFLNGRY 260
LN+FDIL+A LV+ S +D + Y
Sbjct: 180 ADQLNVFDILNANKLVIGQSAIDKIQEVY 208
>sp|Q46IR0|RL4_PROMT 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A)
GN=rplD PE=3 SV=1
Length = 211
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+L + G++ GE+ +DLK+A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG++FGPKPR +++++N+KE+RLA+ TA+ S + +
Sbjct: 66 KQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIP--DAKI 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
+++F K E PKT E + ++R G+D K ++ + SE +++S +N+ +K+++ L
Sbjct: 124 IKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A +LV+ + + YG
Sbjct: 184 NVFDLLNANSLVIGEDALSTIKEVYG 209
>sp|A2BTD6|RL4_PROMS 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601)
GN=rplD PE=3 SV=1
Length = 210
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 139/209 (66%), Gaps = 2/209 (0%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGG
Sbjct: 2 TTLETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ S +
Sbjct: 62 RKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS-- 119
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
+ VE+F ++PKT + I + R G+ +K ++ S+ ++KS NI +K++
Sbjct: 120 DMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIA 179
Query: 232 PRTLNLFDILDAETLVLTPSTVDFLNGRY 260
LN+FDIL+A LV+ S +D + Y
Sbjct: 180 ADQLNVFDILNANKLVIGQSAIDKIQEVY 208
>sp|Q7NPG9|RL4_GLOVI 50S ribosomal protein L4 OS=Gloeobacter violaceus (strain PCC 7421)
GN=rplD PE=3 SV=1
Length = 213
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 137/207 (66%), Gaps = 3/207 (1%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
I + G GE LDL A+ TA VV+ A M N R+GTASTLTRGEVRGGGRKP+
Sbjct: 6 IKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGV+FGPKPRD+ IK+N+KE+RLA+ TA+ S E+ IV
Sbjct: 66 KQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRLALRTALQS--RVEDLIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM-EVSENVEKSSRNIGTLKMLTPRT 234
V+EF+G+ PKT+E ++A RWG+D ++ L++ E N S+RN+ +K++T
Sbjct: 124 VDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKVITAGN 183
Query: 235 LNLFDILDAETLVLTPSTVDFLNGRYG 261
LN+ D+L + +V+T ++ + YG
Sbjct: 184 LNVRDLLATDWIVVTGPALELIKETYG 210
>sp|Q318I5|RL4_PROM9 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplD PE=3 SV=1
Length = 210
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 137/204 (67%), Gaps = 2/204 (0%)
Query: 57 LSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYS 116
L + G+K GE LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY
Sbjct: 7 LKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYK 66
Query: 117 QKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVV 176
QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ S + + V
Sbjct: 67 QKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRIS--DVKAV 124
Query: 177 EEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLN 236
E+F ++PKT + I + R G+ +K ++ SE ++KS NI +K++ LN
Sbjct: 125 EDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSEVIKKSINNIEKVKLIAADQLN 184
Query: 237 LFDILDAETLVLTPSTVDFLNGRY 260
+FDIL+A LV+ S ++ + Y
Sbjct: 185 VFDILNANKLVIGQSAINKIKEVY 208
>sp|A8G761|RL4_PROM2 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplD PE=3 SV=1
Length = 210
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 139/209 (66%), Gaps = 2/209 (0%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGG
Sbjct: 2 TTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ S +
Sbjct: 62 RKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS-- 119
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
+ VE+F ++PKT + I + R G+ +K ++ S+ ++KS NI +K++
Sbjct: 120 DMKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLIA 179
Query: 232 PRTLNLFDILDAETLVLTPSTVDFLNGRY 260
LN+FDIL+A L++ S +D + Y
Sbjct: 180 ADQLNVFDILNANKLLIGQSAIDKIQEVY 208
>sp|A5GIU4|RL4_SYNPW 50S ribosomal protein L4 OS=Synechococcus sp. (strain WH7803)
GN=rplD PE=3 SV=1
Length = 211
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RLA+ TA+ A ++ V
Sbjct: 66 KQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTAL--MARIDDVTV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F E PKT+E ++A+ R G++ K ++ SE + +S RN+ +K++ L
Sbjct: 124 VKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSEVLRRSVRNLEKVKLIAANQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A LVL + + YG
Sbjct: 184 NVFDLLHANALVLGEEALATIQEVYG 209
>sp|Q7V541|RL4_PROMM 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9313) GN=rplD PE=3 SV=1
Length = 211
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ A E+ IV
Sbjct: 66 KQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTAL--MARIEDVIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F + PKT+E +A+ R GL K ++ SE + +S RN+ +K++ L
Sbjct: 124 VKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A +LVL+ + + YG
Sbjct: 184 NVFDLLHANSLVLSEEALAKIQEVYG 209
>sp|Q2JV82|RL4_SYNJA 50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplD PE=3 SV=1
Length = 326
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 137/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+
Sbjct: 6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++LA+ TA+ S E+ IV
Sbjct: 66 RQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQS--RVEDLIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ RNI +K++ L
Sbjct: 124 VEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+ + +++T S ++ L R+G
Sbjct: 184 NVFDLLNVDWVLITTSALEKLKARWG 209
>sp|Q3AMN1|RL4_SYNSC 50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9605)
GN=rplD PE=3 SV=1
Length = 211
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPL+PGGG++FGPKPR +++ +N+KE+RLA+ TA+ A ++ V
Sbjct: 66 KQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTAL--MARIDDVTV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F E PKT+E +A+ R G+ K ++ S+ V +S RN+ +K+++ L
Sbjct: 124 VQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLISADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A LVL + + YG
Sbjct: 184 NVFDLLHANALVLGEEALATIQEVYG 209
>sp|A2CC28|RL4_PROM3 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT
9303) GN=rplD PE=3 SV=1
Length = 211
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 138/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ A E+ IV
Sbjct: 66 KQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTAL--MARLEDVIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F + PKT+E +A+ R G+ K ++ SE + +S RN+ +K++ L
Sbjct: 124 VKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A +LVL+ + + YG
Sbjct: 184 NVFDLLHANSLVLSEEALAKIQEVYG 209
>sp|Q3AUW2|RL4_SYNS9 50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9902)
GN=rplD PE=3 SV=1
Length = 211
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R A+ TA+ A ++ V
Sbjct: 66 KQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTAL--MARIDDITV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F E PKT+E EA+ R G+ K ++ SE V +S RN+ +K+++ L
Sbjct: 124 VKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLISANHL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A +LV+ + + YG
Sbjct: 184 NVFDLLHANSLVVGEDALTTIQEVYG 209
>sp|Q0ID06|RL4_SYNS3 50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9311)
GN=rplD PE=3 SV=1
Length = 211
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 135/206 (65%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + G++ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R A+ TA+ A E+ +V
Sbjct: 66 KQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTAL--MARIEDLVV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F PKTKE I+A+ R + K ++ SE V +S RN+ T+K++ L
Sbjct: 124 VKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLIAADQL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L A LV+ + + YG
Sbjct: 184 NVFDLLHANKLVVGEDALAKIQEVYG 209
>sp|Q2JIM6|RL4_SYNJB 50S ribosomal protein L4 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rplD PE=3 SV=1
Length = 316
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 137/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+
Sbjct: 6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++LA+ TA+ S E+ IV
Sbjct: 66 KQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQS--RVEDLIV 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
VE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ RNI +K++ +
Sbjct: 124 VEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQI 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+ + +++T S ++ L R+G
Sbjct: 184 NVFDLLNVDWVLITVSALEQLKARWG 209
>sp|Q7V9W3|RL4_PROMA 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplD PE=3 SV=1
Length = 211
Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 137/206 (66%), Gaps = 2/206 (0%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+L + G++ G+ L+LK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY
Sbjct: 6 VLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPY 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RLA+ TA+ A + I
Sbjct: 66 KQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRLALRTAL--MARFNDVIA 123
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
V++F K + PKTKE + + R + K ++ + S+ + +S RN+ +K++ L
Sbjct: 124 VKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAAEHL 183
Query: 236 NLFDILDAETLVLTPSTVDFLNGRYG 261
N+FD+L+A +L++ + + YG
Sbjct: 184 NVFDLLNANSLIIGEDALGKIKEVYG 209
>sp|Q1XDH5|RK4_PORYE 50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis
GN=rpl4 PE=3 SV=1
Length = 214
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 138/206 (66%), Gaps = 5/206 (2%)
Query: 44 LIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLT 103
+ V++QL + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T T
Sbjct: 1 MTVNTQL--NYQVYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKT 57
Query: 104 RGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTA 163
R EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE++LA+ TA
Sbjct: 58 RSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTA 117
Query: 164 IASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRN 223
+ + + NT++VE F+ F +PKTK F+EA+ RW LD +K +V + NV S RN
Sbjct: 118 LNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRN 175
Query: 224 IGTLKMLTPRTLNLFDILDAETLVLT 249
+ +++++ TLN+ +L A +++T
Sbjct: 176 LHNVELISADTLNIMALLAAHKIIIT 201
>sp|P51313|RK4_PORPU 50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea
GN=rpl4 PE=3 SV=1
Length = 214
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 5/206 (2%)
Query: 44 LIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLT 103
+ V +QL + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T T
Sbjct: 1 MTVKTQL--NYQVYNWEGQVSGNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKT 57
Query: 104 RGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTA 163
R EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE +LA+ TA
Sbjct: 58 RSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTA 117
Query: 164 IASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRN 223
+ + + NT+VVE FD F++PKTK FIEA+ RW LD +K +V + NV S RN
Sbjct: 118 LNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRN 175
Query: 224 IGTLKMLTPRTLNLFDILDAETLVLT 249
+ +++++ TLN+ +L A +++T
Sbjct: 176 LYNVEIISADTLNIMALLAAHKVIIT 201
>sp|Q8R7V5|RL4_THETN 50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rplD PE=3 SV=1
Length = 206
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+P+ + GE++GE L AV+H+A++ + N+R+GT ST TRGEVRGGGRK
Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR+GS R P GGVVFGPKPRD+S K+ KK KRLA+ +A++S
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV++EF K E+PKTK+ E ++ + + A +V + +NVE S+RN+ K L
Sbjct: 124 IVLDEF--KLEQPKTKKVAELLKNFN---AKSALIVVPQGEKNVELSARNMPNAKALYAN 178
Query: 234 TLNLFDILDAETLVLTPSTVDFL 256
LN +D+L E ++T V +
Sbjct: 179 LLNTYDVLKYEKFIITKDAVAIV 201
>sp|B0K5P4|RL4_THEPX 50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514)
GN=rplD PE=3 SV=1
Length = 206
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRK
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRLA+ +A++S
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S+RNI +K L
Sbjct: 124 IVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYAN 178
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRY 260
LN +DIL + ++T V + Y
Sbjct: 179 YLNTYDILKYDKFIITKDAVGIVEEVY 205
>sp|B0KCK1|RL4_THEP3 50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1
Length = 206
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRK
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRLA+ +A++S
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S+RNI +K L
Sbjct: 124 IVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYAN 178
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRY 260
LN +DIL + ++T V + Y
Sbjct: 179 YLNTYDILKYDKFIITKDAVGIVEEVY 205
>sp|C4Z2T1|RL4_EUBE2 50S ribosomal protein L4 OS=Eubacterium eligens (strain ATCC 27750
/ VPI C15-48) GN=rplD PE=3 SV=1
Length = 206
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + G+++G L+ + +VH A++ + N R+GT S TR EV GGGRK
Sbjct: 4 VSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TG AR+GS R+P GGGVVF PKPRD+S K+NKKEKR+A+ +A++S A
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKI 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
+V++ F+ + KTK+F E M +D KA ++ ++NV S RNI T+K+
Sbjct: 124 VVLDAFN--LDEIKTKKFAEVMSNLKVD---KALVVIEGENKNVVLSGRNIPTVKVSATN 178
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRY 260
+N +D+L ETLV+T + V+ L Y
Sbjct: 179 EINTYDVLKYETLVVTKAAVEKLEEVY 205
>sp|Q6B8V4|RK4_GRATL 50S ribosomal protein L4, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rpl4 PE=3 SV=1
Length = 217
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 2/180 (1%)
Query: 82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFG 141
++HRALI + N R A T TRGEV GGGRKP+ QK TGRAR GSNR+PL GGGV+FG
Sbjct: 39 ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFG 98
Query: 142 PKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLD 201
P+ + + KINKKEK+LA+ I + +NTIV E F K P TK + ++++ LD
Sbjct: 99 PRHKKYVNKINKKEKQLALRILINN--KFKNTIVTENFISKISTPNTKILVNNLKKYNLD 156
Query: 202 PKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261
+V E S ++ S+RN+ +++L LN+ +L A +++ +D +N Y
Sbjct: 157 TNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIVSLLKANHIIINKDALDIINKMYN 216
>sp|B9MKI0|RL4_CALBD 50S ribosomal protein L4 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rplD PE=3 SV=1
Length = 208
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 124/202 (61%), Gaps = 3/202 (1%)
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGG 111
+ +P+ + G++IGE L+ V+H+A++ + N+R+GT + TR EVRGGG
Sbjct: 2 AKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGG 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAE 171
RKP+ QK TGRAR+GS R P GGVVF KPRD+SI + KK KRLA+ A++S
Sbjct: 62 RKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKEN 121
Query: 172 NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLT 231
N IV++ +D + KTKE + ++ GL+ QKA ++ E +E ++KS++NI +K L
Sbjct: 122 NLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNEYLQKSTKNIPEVKTLQ 178
Query: 232 PRTLNLFDILDAETLVLTPSTV 253
LN+FDIL + V+ V
Sbjct: 179 VGNLNVFDILKYDKFVILQDAV 200
>sp|Q250N1|RL4_DESHY 50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain
Y51) GN=rplD PE=3 SV=1
Length = 207
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 125/200 (62%), Gaps = 4/200 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ +++ G +GE LD + V+H+A++ + ++RRGT STL RGEVRGGGRK
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR GS R+PL GG V+FGPKPR + + KK +RLA+ +A++S +
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV+E+ KT+E ++ ++ L+ +KA + E E +E+S+RNI +K
Sbjct: 124 IVLEDLS--LNEAKTREMVKVLQ--ALNVSKKALIVTDEFMETIERSARNIAGIKTTAVE 179
Query: 234 TLNLFDILDAETLVLTPSTV 253
+N++D+L+++ +V+T + V
Sbjct: 180 GMNIYDLLNSDVIVMTKAAV 199
>sp|C4ZBD5|RL4_EUBR3 50S ribosomal protein L4 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplD PE=3 SV=1
Length = 206
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + G+++ + L+ + +VH A++ + NKR+GT TR EVRGGGRK
Sbjct: 4 VAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TG AR+GS R+P GGGVVF P PRD+S K+NKKEKR A+ +A+ S
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKF 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
+VV+E K + KTK+F+E ++ + +KA ++ ++ E V S+ NI T+K
Sbjct: 124 VVVDEL--KLDEIKTKKFVEVLKNLNV---EKALVVLNDMDEKVIASAANIPTVKTTQTN 178
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRYG 261
LN+FD+L +T+V+T + V + Y
Sbjct: 179 ELNVFDVLKYDTVVVTKAAVATIEEVYA 206
>sp|B2A4E0|RL4_NATTJ 50S ribosomal protein L4 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplD PE=3
SV=1
Length = 207
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%)
Query: 61 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKT 120
G ++GE LD A D ++H A+ + +KRRGTAS TR EVRGGGRKP+ QK T
Sbjct: 11 GSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGGGRKPWRQKGT 70
Query: 121 GRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFD 180
GRAR GS R+P+ GGG+ F PKPRD+S K+ KK KR AI +A+ + +++EE
Sbjct: 71 GRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNNGEIVILEELT 130
Query: 181 GKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDI 240
E PKTK+ IE + L KA + NV +S+RNI + LN++D+
Sbjct: 131 --MEAPKTKKIIEMLE--NLSINHKAMIVTGASDLNVYRSTRNIPGVSSALANNLNVYDV 186
Query: 241 LDAETLVLTPSTVDFL 256
L+ + LVLT V +
Sbjct: 187 LNHDYLVLTKDAVSVI 202
>sp|A5D5J1|RL4_PELTS 50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 121/198 (61%), Gaps = 5/198 (2%)
Query: 56 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPY 115
+ + GE++GE L + + V+H A++ + N+R GT T TR EVRGGGRKP+
Sbjct: 6 LYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPW 65
Query: 116 SQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIV 175
QK TGRAR GS R+PL GGG++FGP PRD+S + +K +RLA+ +A+++ + + +V
Sbjct: 66 RQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNSGDILV 125
Query: 176 VEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235
++E K ++PKTKE + +D A + E E VE+S+RNI +K + L
Sbjct: 126 LDEL--KLDQPKTKEMARILNNLKVD---DALLVTAEKDEAVERSARNIPNIKPVQAALL 180
Query: 236 NLFDILDAETLVLTPSTV 253
N++DIL + LV+T V
Sbjct: 181 NVYDILAYDKLVMTRDAV 198
>sp|A4XLS9|RL4_CALS8 50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1
Length = 208
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 3/200 (1%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+P+ + G++IGE L+ V+H+A++ + N+R+GT + TR EVRGGGRK
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR+GS R P GGVVF KPRD+SI + KK +RLA+ A++S N
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNL 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV++++D + +TKE I ++ GL+ +KA ++ E +E ++KS++NI +K L
Sbjct: 124 IVLDKWD--MNQYRTKEVIRVLKNLGLE-NEKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180
Query: 234 TLNLFDILDAETLVLTPSTV 253
LN+FDIL + ++ V
Sbjct: 181 NLNVFDILKYDKFIILQDAV 200
>sp|B8G1W7|RL4_DESHD 50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=rplD PE=3 SV=1
Length = 207
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 125/200 (62%), Gaps = 4/200 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ +++ G +GE LD + V+H+A++ + ++RRGT STL RGEVRGGGRK
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR GS R+PL GG V+FGPKPR + + KK +RLA+ +A++S +
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV+E+ KT+E ++ ++ L+ +KA + E E +++S+RNI +K
Sbjct: 124 IVLEDLS--LNEAKTREMVKVLQ--ALNVGKKALIVTDEFMETIDRSARNIAGIKTTAVE 179
Query: 234 TLNLFDILDAETLVLTPSTV 253
+N++D+L+++ +V+T + V
Sbjct: 180 GMNIYDLLNSDVIVMTKAAV 199
>sp|Q2RFP8|RL4_MOOTA 50S ribosomal protein L4 OS=Moorella thermoacetica (strain ATCC
39073) GN=rplD PE=3 SV=1
Length = 207
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 124/200 (62%), Gaps = 4/200 (2%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ + + G+++GE LD + AV+H A++ + ++RRGTA+T +V GGGRK
Sbjct: 4 VALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR GS R+PL GG V+FGP+PRD+ ++ KK +RLA+ +A+AS N
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNI 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
IV++E K E+P+TK+ ++ L+ + KA + NVE S+RN+ ++ LT
Sbjct: 124 IVLDEL--KMEKPRTKDMAHILK--NLNAENKALVVTATREPNVELSARNLPGVRFLTSD 179
Query: 234 TLNLFDILDAETLVLTPSTV 253
+N++D+L + LV+T V
Sbjct: 180 GINVYDLLAHDKLVITKDAV 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,521,595
Number of Sequences: 539616
Number of extensions: 4423071
Number of successful extensions: 21021
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 19375
Number of HSP's gapped (non-prelim): 958
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)