Query 023032
Match_columns 288
No_of_seqs 170 out of 1221
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_G Ribosomal protein L4; l 100.0 5.3E-89 1.8E-93 636.1 9.7 269 3-276 6-275 (293)
2 3v2d_F 50S ribosomal protein L 100.0 3.3E-74 1.1E-78 516.1 20.5 206 48-263 4-209 (210)
3 1dmg_A Ribosomal protein L4; a 100.0 1.8E-74 6E-79 522.5 14.3 206 53-261 2-225 (225)
4 3r8s_E 50S ribosomal protein L 100.0 1.1E-72 3.9E-77 503.1 17.4 191 66-261 11-201 (201)
5 2zjr_C 50S ribosomal protein L 100.0 1E-72 3.6E-77 504.7 10.0 201 53-263 3-203 (205)
6 2ftc_D Mitochondrial ribosomal 100.0 6.6E-66 2.3E-70 450.9 16.2 171 84-258 1-175 (175)
7 3j21_D 50S ribosomal protein L 100.0 3.3E-62 1.1E-66 448.8 15.9 200 53-261 2-255 (255)
8 4a17_C RPL4, ribosomal protein 100.0 1.4E-59 4.8E-64 452.0 18.7 207 51-263 4-273 (410)
9 2zkr_c 60S ribosomal protein L 100.0 8.4E-60 2.9E-64 454.8 14.5 203 53-262 7-266 (421)
10 1vq8_C 50S ribosomal protein L 100.0 1E-58 3.5E-63 423.9 14.4 194 53-259 2-246 (246)
11 3iz5_D 60S ribosomal protein L 100.0 4.8E-58 1.6E-62 442.0 11.6 208 51-263 6-272 (405)
12 2wwb_H 60S ribosomal protein L 100.0 2.8E-57 9.6E-62 431.9 11.4 200 53-262 5-264 (362)
13 1vq8_C 50S ribosomal protein L 52.3 6.7 0.00023 35.4 2.3 69 94-169 38-116 (246)
14 2ca6_A RAN GTPase-activating p 48.4 6.8 0.00023 35.4 1.8 17 217-233 294-311 (386)
15 2zu0_C Probable ATP-dependent 44.5 34 0.0012 30.2 5.7 41 156-199 171-211 (267)
16 2ca6_A RAN GTPase-activating p 44.3 6.4 0.00022 35.6 0.9 8 224-231 273-280 (386)
17 2d2e_A SUFC protein; ABC-ATPas 41.7 35 0.0012 29.7 5.3 54 155-212 149-202 (250)
18 4aby_A DNA repair protein RECN 41.1 23 0.00079 32.5 4.2 55 155-212 301-355 (415)
19 1ye8_A Protein THEP1, hypothet 37.8 75 0.0026 26.0 6.5 63 168-236 97-164 (178)
20 2ghi_A Transport protein; mult 37.7 47 0.0016 29.1 5.5 52 156-212 162-213 (260)
21 2qi9_C Vitamin B12 import ATP- 37.0 26 0.0009 30.7 3.7 43 156-198 133-179 (249)
22 3kta_B Chromosome segregation 36.4 62 0.0021 26.8 5.8 52 148-199 62-115 (173)
23 1g6h_A High-affinity branched- 36.2 25 0.00086 30.8 3.4 55 156-214 160-214 (257)
24 2ixe_A Antigen peptide transpo 35.6 40 0.0014 29.8 4.7 54 156-212 163-216 (271)
25 3gfo_A Cobalt import ATP-bindi 33.8 19 0.00064 32.3 2.2 62 150-214 143-205 (275)
26 3tui_C Methionine import ATP-b 33.5 17 0.00059 34.3 2.0 54 157-213 171-224 (366)
27 2nq2_C Hypothetical ABC transp 33.5 32 0.0011 30.2 3.6 54 156-212 135-188 (253)
28 1b0u_A Histidine permease; ABC 33.0 28 0.00096 30.6 3.2 53 156-212 160-212 (262)
29 1ji0_A ABC transporter; ATP bi 32.7 28 0.00096 30.1 3.1 54 156-213 146-199 (240)
30 1mv5_A LMRA, multidrug resista 32.4 41 0.0014 29.0 4.2 53 155-212 145-197 (243)
31 2ff7_A Alpha-hemolysin translo 32.2 33 0.0011 29.9 3.5 52 156-212 152-203 (247)
32 2pjz_A Hypothetical protein ST 31.7 64 0.0022 28.5 5.4 51 156-213 135-185 (263)
33 2yz2_A Putative ABC transporte 31.4 31 0.0011 30.4 3.2 54 156-213 145-198 (266)
34 3tif_A Uncharacterized ABC tra 30.6 20 0.00069 31.0 1.8 54 156-212 152-205 (235)
35 3auy_A DNA double-strand break 30.1 1.3E+02 0.0045 27.4 7.4 60 151-212 281-345 (371)
36 2olj_A Amino acid ABC transpor 29.4 29 0.00099 30.8 2.7 52 157-212 167-218 (263)
37 2ihy_A ABC transporter, ATP-bi 28.4 38 0.0013 30.2 3.3 54 156-213 168-223 (279)
38 3us3_A Calsequestrin-1; calciu 28.2 26 0.00088 32.1 2.2 44 223-266 308-352 (367)
39 4g1u_C Hemin import ATP-bindin 26.8 28 0.00095 30.8 2.1 49 150-198 141-193 (266)
40 1oxx_K GLCV, glucose, ABC tran 26.5 74 0.0025 29.4 5.1 56 156-214 147-202 (353)
41 2pcj_A ABC transporter, lipopr 26.3 34 0.0011 29.3 2.5 53 156-212 147-199 (224)
42 2onk_A Molybdate/tungstate ABC 25.6 27 0.00092 30.5 1.7 54 156-212 133-186 (240)
43 3qf7_A RAD50; ABC-ATPase, ATPa 25.2 1.3E+02 0.0044 27.6 6.4 56 156-212 286-344 (365)
44 1sgw_A Putative ABC transporte 23.7 43 0.0015 28.7 2.7 54 156-213 140-193 (214)
45 1e69_A Chromosome segregation 23.5 85 0.0029 28.0 4.7 50 149-198 218-269 (322)
46 3bbo_G Ribosomal protein L4; l 23.5 15 0.00052 34.0 -0.3 25 8-32 17-42 (293)
47 3rlf_A Maltose/maltodextrin im 23.2 85 0.0029 29.6 4.8 40 156-198 140-179 (381)
48 1vpl_A ABC transporter, ATP-bi 23.1 49 0.0017 29.1 3.0 53 156-212 153-205 (256)
49 2byk_A Chrac-16; nucleosome sl 22.9 29 0.001 28.5 1.3 17 215-231 77-93 (140)
50 2cbz_A Multidrug resistance-as 22.5 93 0.0032 26.7 4.6 38 156-196 134-171 (237)
51 1ayz_A UBC2, ubiquitin-conjuga 21.5 21 0.00071 29.9 0.2 9 258-266 146-154 (169)
52 1g29_1 MALK, maltose transport 20.8 47 0.0016 31.1 2.5 40 156-198 146-185 (372)
53 3ux8_A Excinuclease ABC, A sub 20.6 43 0.0015 33.4 2.3 56 156-212 550-605 (670)
54 2li5_B Ubiquitin-like modifier 20.4 20 0.00069 22.3 -0.1 16 258-273 16-31 (34)
55 2wwb_H 60S ribosomal protein L 20.3 75 0.0026 30.2 3.7 52 74-125 30-87 (362)
56 3d31_A Sulfate/molybdate ABC t 20.3 40 0.0014 31.3 1.9 56 156-214 134-189 (348)
57 1yqt_A RNAse L inhibitor; ATP- 20.3 1E+02 0.0036 30.0 4.9 61 148-212 156-217 (538)
No 1
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.3e-89 Score=636.10 Aligned_cols=269 Identities=65% Similarity=1.031 Sum_probs=202.6
Q ss_pred cccccccccccccccccCCC-CCCCCccCCCCCCCCCCCCCcceeecccCCCceeeccCCCeEeEEEcCCCCCCCCchHH
Q 023032 3 ASFSSLSFFSSTIFLTSSSN-KVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARA 81 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~d 81 (288)
+++++|||||||+|+|++++ .++++.++++ +++..+.+|+.++++|+ +++|||++|+++|+++||+.||+.++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~M~-~v~V~~~~G~~~g~veLp~~VF~~~~r~d 82 (293)
T 3bbo_G 6 SSSLSLSFFSSSLFSSKSRNFSSKPILKLPS--SSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARA 82 (293)
T ss_dssp -----------------------------------------------CCE-EEECCCSSSCCCSEEEECSSSSSSCCCTT
T ss_pred cCcceeeeeeccccccCccccCccchhhcCC--CCCcccccccchhhcCc-eeEEEcCCCCEeeeEEcCHHHhCCCccHH
Confidence 45778999999999999987 6666677755 44446788998999987 89999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCCCCccccccCHHHHHHHHH
Q 023032 82 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAIS 161 (288)
Q Consensus 82 llh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkPRd~~~klNkK~rrlAl~ 161 (288)
|||++|+||++|+|||||+||||+||+||||||||||||||||+|++|+|+|||||++|||+||||++|||||+|++||+
T Consensus 83 lih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~rsP~~rGGGvafGPkPRdy~~klNKK~rrlAlr 162 (293)
T 3bbo_G 83 VVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALS 162 (293)
T ss_dssp TTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSSCSSSSSSCCSSCCCSCCCCCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCcccCCceecCceecCCcCcchhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhc
Q 023032 162 TAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDIL 241 (288)
Q Consensus 162 sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL 241 (288)
+|||+++ |+|+|||++...++.||||+++++|+++|++.++++|||+.+.++|+++|+||||+|+++++++|||||||
T Consensus 163 sALSak~--g~LvVvd~~~~~~~~~KTK~~~~~Lk~lg~~~~~k~LlV~~~~d~nl~~A~RNIp~V~v~~v~~LNvydLl 240 (293)
T 3bbo_G 163 TAIASAV--GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240 (293)
T ss_dssp HHHHHHH--HTTCCCCCCGGGTTCCSSHHHHTTHHHHSCSSCSSSCCEECCCSSSCCTTTSSSSSCEECCSSCCCHHHHH
T ss_pred HHHHHHc--CCEEEEecccccccCCCHHHHHHHHHHcCCcccCceEEEEcCCChhHHHHHhCCCCcEEEeeCceeHHHhh
Confidence 9999999 88999999821268899999999999999964357899998889999999999999999999999999999
Q ss_pred CCCcEEEcHHHHHHHHHhhCCCCCCCCCchhhhHH
Q 023032 242 DAETLVLTPSTVDFLNGRYGVEFEGDGDEEEEESE 276 (288)
Q Consensus 242 ~~~~lViT~~Al~~L~e~~~~~~~~~~~~~~~~~~ 276 (288)
++++||||++||++|+++|+...+|++||||||+|
T Consensus 241 ~~~~lViT~~Al~~Lee~l~~~~~~~~~~~~~~~~ 275 (293)
T 3bbo_G 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEE 275 (293)
T ss_dssp HSSCEECCTTHHHHHHHHSCC--------------
T ss_pred CCCcEEEEHHHHHHHHHHhccccccccccchhhhc
Confidence 99999999999999999999999996666555555
No 2
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=3.3e-74 Score=516.05 Aligned_cols=206 Identities=36% Similarity=0.543 Sum_probs=195.4
Q ss_pred cccCCCceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCC
Q 023032 48 SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGS 127 (288)
Q Consensus 48 ~~~~~~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs 127 (288)
..|| +++|||.+|+++|+++||+ ++|+||||++|+||++|+|||||+||||+||+||||||||||||||||+||
T Consensus 4 ~~m~-~v~V~~~~G~~~g~i~L~~-----~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs 77 (210)
T 3v2d_F 4 VAVY-QIPVLSPSGRRELAADLPA-----EINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGD 77 (210)
T ss_dssp --CC-CCCEECSSSCCCCCCCCCS-----CCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSSCSSSSSSCCCCC
T ss_pred cccc-eeEEEcCCCCEeeeEecCC-----cccHHHHHHHHHHHHHhccCCccCCCccccccCCCCCCCCCCCCCccCCCc
Confidence 3566 8999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceE
Q 023032 128 NRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKAT 207 (288)
Q Consensus 128 ~rsP~~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~L 207 (288)
+|||+|||||++|||+||||++|||||+|++|+++|||+++++++++|||+|. ++.||||+++++|++||++.++++|
T Consensus 78 ~rsP~~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~L 155 (210)
T 3v2d_F 78 IGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVL 155 (210)
T ss_dssp TTSTTSTTCCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEE
T ss_pred ccCCcccCCeeeCCCCCccceeeCCHHHHHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999985 6889999999999999996556789
Q ss_pred EEEeccchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhCCC
Q 023032 208 FLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 208 iV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~~~ 263 (288)
||++ ++|+++|+||||+|+++++++||+||||++++||||++||++|+++|+++
T Consensus 156 iV~~--~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~vv~t~~Al~~l~e~~~~~ 209 (210)
T 3v2d_F 156 LVTG--NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIGGE 209 (210)
T ss_dssp EECS--CHHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHHHC--
T ss_pred EEeC--ChhHHHHHhCcCCceEEeeCCccHHHHhCCCCEEEEHHHHHHHHHHhccC
Confidence 9987 89999999999999999999999999999999999999999999999843
No 3
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=1.8e-74 Score=522.52 Aligned_cols=206 Identities=41% Similarity=0.639 Sum_probs=146.2
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCC
Q 023032 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPL 132 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~ 132 (288)
+++|||++|+++|+++||+.+|+.++|+||||++|+||++|+|||||+||||+||+||||||||||||||||+||+|||+
T Consensus 2 ~~~v~~~~g~~~g~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 81 (225)
T 1dmg_A 2 QVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPI 81 (225)
T ss_dssp EEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC----------------------------------------
T ss_pred eeEEEcCCCCEeeEEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccccceeeEeecCCCCCCCCCCCCccccccccCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 133 RPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 133 ~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
|||||++|||+||||++|||||+|++||++|||++++++.|+|||++. ++.||||+++++|+++|++ ++++|||+++
T Consensus 82 ~rGGG~~fgPkpR~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~~--~~~~KTK~~~~~L~~l~~~-~~~~LiV~~~ 158 (225)
T 1dmg_A 82 WRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLK--LERPKTKSLKEILQNLQLS-DKKTLIVLPW 158 (225)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCC--CSSCCHHHHHHHHHHTTCT-TSCEEEEECC
T ss_pred eecCceecCCcCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeecc--cCCCCHHHHHHHHHHcCCC-CCCEEEEECC
Confidence 999999999999999999999999999999999999999999999984 7889999999999999985 2469999987
Q ss_pred cch---hHHHhhhcCCCceeecCCC---------------cchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023032 213 VSE---NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 213 ~~~---nl~~s~RNIp~V~v~~~~~---------------Lnv~dLL~~~~lViT~~Al~~L~e~~~ 261 (288)
.++ |+++|+||||+|+++++++ ||+||||++++||||++|+++|+++|+
T Consensus 159 ~~~~~~n~~~a~RNip~v~v~~~~~~~~~~~~~~~~~~~~lNv~dll~~~~lv~t~~Al~~lee~l~ 225 (225)
T 1dmg_A 159 KEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG 225 (225)
T ss_dssp CSHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHHC
T ss_pred CccchHHHHHHHhCCCCCEEEecCCcccccccccccCcCcEEHHHHhCCCcEEEeHHHHHHHHHHhC
Confidence 788 9999999999999999999 999999999999999999999999985
No 4
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=1.1e-72 Score=503.06 Aligned_cols=191 Identities=30% Similarity=0.487 Sum_probs=186.4
Q ss_pred EEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCCCC
Q 023032 66 ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPR 145 (288)
Q Consensus 66 ~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkPR 145 (288)
+|+||+.+|+.|+|+||||++|+||++|+|||||+||||+||+||||||||||||||||+||+|||+|||||++|||+||
T Consensus 11 ~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~pR 90 (201)
T 3r8s_E 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQ 90 (201)
T ss_dssp CEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSSCSSSSSSCCCCCTTCTTSTTCCBTTCCCCC
T ss_pred eEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCCCcceeeecCCCCCCCccCCCCccccCcCcCCceeCCEeecCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccchhHHHhhhcCC
Q 023032 146 DWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIG 225 (288)
Q Consensus 146 d~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~~nl~~s~RNIp 225 (288)
||++|||||+|++|+++|||+++++++++|||++. ++.||||+++++|+++|+ +++|||+++.|+|+++|+||||
T Consensus 91 ~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~l~~---~~~LiV~~~~~~~~~~a~RNip 165 (201)
T 3r8s_E 91 DHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFS--VEAPKTKLLAQKLKDMAL---EDVLIITGELDENLFLAARNLH 165 (201)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCEEECSCCC--CSSSCHHHHHHHHHHHTC---SSEEEEESSCCHHHHHTTSSCS
T ss_pred cceeccCHHHHHHHHHHHHHHHhhcCCEEEecccc--ccCcCHHHHHHHHHHcCC---CceEEEECCCchHHHHHHhCCC
Confidence 99999999999999999999999999999999985 688999999999999998 3799999988999999999999
Q ss_pred CceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhC
Q 023032 226 TLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 226 ~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~ 261 (288)
+|+++++++||+||||++++||||++|+++|+++|+
T Consensus 166 ~v~v~~~~~lnv~dll~~~~~v~t~~Al~~lee~l~ 201 (201)
T 3r8s_E 166 KVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA 201 (201)
T ss_dssp SEEEEEGGGCCHHHHHHSSEEEECHHHHHHHHHHHC
T ss_pred CceEEeeCCCcHHHHhCCCCEEEEHHHHHHHHHHhC
Confidence 999999999999999999999999999999999985
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=1e-72 Score=504.73 Aligned_cols=201 Identities=33% Similarity=0.557 Sum_probs=188.9
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCC
Q 023032 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPL 132 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~ 132 (288)
+++|||.+|+++|+++||+ +|+||||++|+||++|+|||||+||||+||+||||||||||||||||+||+|||+
T Consensus 3 ~v~v~~~~g~~~g~i~L~~------~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 76 (205)
T 2zjr_C 3 QINVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPT 76 (205)
T ss_dssp CCCCSSCCCCCCCCCCTTT------CCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCSTT
T ss_pred eeEEEcCCCCEeeeEECCC------chHHHHHHHHHHHHHhccccccccceeeeccCCCCCCCCcCCCCCcccCcccCCc
Confidence 6999999999999999996 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 133 RPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 133 ~rGGGvafGPkPRd~~~klNkK~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
|||||++|||+||||++|||||+|++||++|||++++++.|+|||+|. ++.||||+++++|+++|++..+++|||+
T Consensus 77 ~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~lvVvd~~~--~~~~KTK~~~~~L~~l~~~~~~~~LiV~-- 152 (205)
T 2zjr_C 77 FVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFD--IADAKTKNFISWAKQNGLDGTEKVLLVT-- 152 (205)
T ss_dssp STTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTT--SCSSCSHHHHHHHHHTTCCSSSCEEEEC--
T ss_pred ccCCeeecCCCCcchhhhcCHHHHHHHHHHHHHHHhhcCCEEEEeccc--cCCCCHHHHHHHHHHcCCCcCCCEEEEE--
Confidence 999999999999999999999999999999999999999999999984 7889999999999999986325789998
Q ss_pred cchhHHHhhhcCCCceeecCCCcchhhhcCCCcEEEcHHHHHHHHHhhCCC
Q 023032 213 VSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 213 ~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~~~lViT~~Al~~L~e~~~~~ 263 (288)
.|+|+++|+||||+|+++++++||+||||++++||||++||++|+++|+.+
T Consensus 153 ~~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~~v~t~~Al~~lee~~~~~ 203 (205)
T 2zjr_C 153 DDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEEEAGEE 203 (205)
T ss_dssp CCHHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC-----
T ss_pred cCccHHHHHhCCCCceEEeeCceeHHHHhCCCcEEEEHHHHHHHHHHHhhh
Confidence 589999999999999999999999999999999999999999999998743
No 6
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=6.6e-66 Score=450.90 Aligned_cols=171 Identities=31% Similarity=0.512 Sum_probs=164.3
Q ss_pred HHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCccccCCCCCCCccCcccccCCC-CCccccccCHHHHHHHHHH
Q 023032 84 HRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPK-PRDWSIKINKKEKRLAIST 162 (288)
Q Consensus 84 h~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPk-PRd~~~klNkK~rrlAl~s 162 (288)
|++|+||++++|||||+||||+||+||||||||||||||||+||+|||+|||||++|||+ ||||+++||||+|++||++
T Consensus 1 h~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~~pR~~~~klnkK~rrlAl~s 80 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKV 80 (175)
T ss_pred CHHHHHHHHHhhcCCCCCcceeeecCCCCCCCCcCCCCccccCCCcCCcccCCEeecCCCCccchhhhcCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec-c--chhHHHhhhcCCCceeecCCCcchhh
Q 023032 163 AIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME-V--SENVEKSSRNIGTLKMLTPRTLNLFD 239 (288)
Q Consensus 163 ALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~-~--~~nl~~s~RNIp~V~v~~~~~Lnv~d 239 (288)
|||++++++.|+|||+|. ++.||||+++++|+++|++ .++|||+++ . ++|+++|+||||+|+++++++|||||
T Consensus 81 ALs~k~~~~~lvVvd~~~--~~~~KTK~~~~~l~~l~~~--~~~LiV~~~~~~~~~~~~~a~RNip~v~v~~~~~lnv~d 156 (175)
T 2ftc_D 81 ALTVKLAQDDLHIMDSLE--LPTGDPQYLTELAHYRRWG--DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHS 156 (175)
T ss_pred HHHHhccCCCEEEEeccc--CCCCCHHHHHHHHHHCCCC--CceEEEECCCccCCHHHHHHHhCCCCcEEEeeCCEeHHH
Confidence 999999999999999984 6889999999999999985 468999866 4 89999999999999999999999999
Q ss_pred hcCCCcEEEcHHHHHHHHH
Q 023032 240 ILDAETLVLTPSTVDFLNG 258 (288)
Q Consensus 240 LL~~~~lViT~~Al~~L~e 258 (288)
||++++||||++||++|++
T Consensus 157 ll~~~~lv~t~~Al~~lee 175 (175)
T 2ftc_D 157 MLKHQTLVLTLPTVAFLED 175 (175)
T ss_pred HhCCCCEEEEHHHHHHHhC
Confidence 9999999999999999985
No 7
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-62 Score=448.77 Aligned_cols=200 Identities=25% Similarity=0.312 Sum_probs=186.2
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCC--Cccc---ccccceecCCCCC---CcccCCC-Ccc
Q 023032 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRR--GTAS---TLTRGEVRGGGRK---PYSQKKT-GRA 123 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~Rq--GTa~---TKtR~EV~GsgRK---P~~QKGT-GRA 123 (288)
+++|||.+|+++|+++|| .+|..|+|+||||++|+||++|+|| ||+. ||||+||+|+||| ||||||| |||
T Consensus 2 ~v~V~~~~G~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGrA 80 (255)
T 3j21_D 2 KVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA 80 (255)
T ss_dssp EEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCCC
T ss_pred eeEEEcCCCCEeeEEEhH-HhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCcc
Confidence 699999999999999999 7999999999999999999999999 8887 8999999999995 9999999 999
Q ss_pred ccCCCCCCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHHhC---------------CcEEEeccCCCCCCcc
Q 023032 124 RRGSNRTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAAE---------------NTIVVEEFDGKFERPK 187 (288)
Q Consensus 124 R~Gs~rsP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~~~---------------~liVVd~~~~~~e~~K 187 (288)
| ++|+|||||++|||+| |+|+++||||+|++||++|||+++.++ .|+|||+|. +.+|
T Consensus 81 r----rsP~~rGGg~~~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~---~~~K 153 (255)
T 3j21_D 81 A----FVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ---KVQK 153 (255)
T ss_dssp S----SCSSSTTCCCSSCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG---TCCC
T ss_pred c----cCccccCCeeecCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc---CCCC
Confidence 8 7999999999999999 899999999999999999999999887 688888873 4579
Q ss_pred HHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcC
Q 023032 188 TKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILD 242 (288)
Q Consensus 188 TK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~ 242 (288)
||+++++|++||++.| +++|||+++.++ +.+|+||||+|+++++++||+||||+
T Consensus 154 TK~~~~~L~~lg~~~dv~r~~~~~~~ragkgk~r~rr~~~~~~~LiV~~~~~~-~~~a~RNip~V~v~~~~~LNv~~Ll~ 232 (255)
T 3j21_D 154 TRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKNEG-IVLGARNHPGVDVVVVDNLGVEHLAP 232 (255)
T ss_dssp HHHHHHHHHHHTCTHHHHHHTSCCCSCSSGGGGGSCCSCCCCCCEEEESSSSS-SCSSSSSSTTCEEEETTTCCHHHHST
T ss_pred hHHHHHHHHHcCChhhhHHhhccceecccccccccccccCCCceEEEECCCcH-HHHHHhCCCCcEEEecCCccHHHHhC
Confidence 9999999999998531 468999977666 99999999999999999999999999
Q ss_pred CC----cEEEcHHHHHHHHHhhC
Q 023032 243 AE----TLVLTPSTVDFLNGRYG 261 (288)
Q Consensus 243 ~~----~lViT~~Al~~L~e~~~ 261 (288)
++ .||||++||+.|+++|+
T Consensus 233 ~~~~gr~~V~T~~A~~~lee~~g 255 (255)
T 3j21_D 233 GTHPGRLTVWTVSAIERLRELYG 255 (255)
T ss_dssp TSCCCCCEEEEHHHHHHHHSCCC
T ss_pred CCCCCceEEEEHHHHHHHHHHhC
Confidence 87 89999999999999885
No 8
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=1.4e-59 Score=452.00 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=188.6
Q ss_pred CCCceee-ccCCCeE-eE-EEcCCCCCCCCchHHHHHHHHHHHHhhCCC---------CcccccccceecCCCCCCcc--
Q 023032 51 ASPLPIL-SFTGEKI-GE-TYLDLKSAAPDTARAVVHRALITDMQNKRR---------GTASTLTRGEVRGGGRKPYS-- 116 (288)
Q Consensus 51 ~~~v~V~-~~~G~~~-g~-ieL~~~vF~~~~~~dllh~~v~~~~a~~Rq---------GTa~TKtR~EV~GsgRKP~~-- 116 (288)
||+++|| |.+|+.+ |+ |+|| .||..|+|+||||++|+||++|+|| |||.|+||+||||+|||||+
T Consensus 4 ~p~v~V~~~~~G~~~~g~~veLp-~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~RiP 82 (410)
T 4a17_C 4 RPQIHVHDAKEANKQTATKLTLP-AVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARIP 82 (410)
T ss_dssp CCEEEEEESSSTTEEEEEEEECC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSSE
T ss_pred CCeeEEEECCCCCccCCceEehh-HhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCccccc
Confidence 3489999 8999996 78 9995 6999999999999999999999999 88999999999999999999
Q ss_pred ---cCCCCccccCCCCCCCccCcccccCCCC--CccccccCHHHHHHHHHHHHHHHHH---------------hCCcEEE
Q 023032 117 ---QKKTGRARRGSNRTPLRPGGGVVFGPKP--RDWSIKINKKEKRLAISTAIASAAA---------------AENTIVV 176 (288)
Q Consensus 117 ---QKGTGRAR~Gs~rsP~~rGGGvafGPkP--Rd~~~klNkK~rrlAl~sALs~k~~---------------~~~liVV 176 (288)
||||||||||+++ |+|+ ||++|||+| |+|+++||+|+|++|+++|||+++. ++.++|+
T Consensus 83 R~~QKGTGRARqGs~r-P~~r-GGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LVV~ 160 (410)
T 4a17_C 83 RVGGSGTHRSGQAAFG-NQCR-KGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISNVQELPYVFD 160 (410)
T ss_dssp EECCSSSTTTTCBCSS-TTSS-SCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEEEC
T ss_pred cccCCCCCcccccccC-CccC-CeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccccCcCCEEEE
Confidence 9999999999999 9988 899999997 9999999999999999999999984 3445555
Q ss_pred eccCCCCCCccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeec
Q 023032 177 EEFDGKFERPKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLT 231 (288)
Q Consensus 177 d~~~~~~e~~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~ 231 (288)
|++. +.+|||+++++|++||++.+ +++|||+++.|+++++|+||||+|++++
T Consensus 161 D~~e---~~~KTK~~v~~Lk~lg~~~dv~r~~~~k~iRaGkGKmRgRry~~~k~~LIV~~~~d~~l~~A~RNIpgV~v~~ 237 (410)
T 4a17_C 161 DSVE---SYEKTKQAVAFLKRVGAYDDVLRVAETKALRAGQGKLRNRRYKLRRGPLVVYGNEKSTLTRALRNIPGVDVCN 237 (410)
T ss_dssp TTGG---GCCSHHHHHHHHHHHTTHHHHHHHHHCEEECCGGGGGGTCCEEECCCCEEEECCTTCSHHHHHTTSTTCEEEE
T ss_pred ecCc---CCCCHHHHHHHHHHcCCcchhhhhhcccceeccccccccccccCCCceEEEECCCchHHHHHHhCCCCcEEEE
Confidence 6653 34899999999999998632 3589999888999999999999999999
Q ss_pred CCCcchhhhcCCC----cEEEcHHHHHHHHHhhCCC
Q 023032 232 PRTLNLFDILDAE----TLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 232 ~~~Lnv~dLL~~~----~lViT~~Al~~L~e~~~~~ 263 (288)
+++||+||||+++ .||||++||+.|+++|+..
T Consensus 238 v~~LNv~dLl~~~~~gR~vV~TksAl~~Lee~~~~~ 273 (410)
T 4a17_C 238 VNRLNLLQLAPGGHVGRFIIWTESAFKKLNEIFGTY 273 (410)
T ss_dssp TTSCCHHHHSGGGCCCCCEEECHHHHHHHHHHHCBT
T ss_pred eCCccHHHHhCCCCCCceEEEEHHHHHHHHHHHccc
Confidence 9999999999976 9999999999999999863
No 9
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8.4e-60 Score=454.79 Aligned_cols=203 Identities=23% Similarity=0.303 Sum_probs=189.2
Q ss_pred CceeeccCCCeEe-EEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccc-----cccceecCCCCCCcc-----cCCCC
Q 023032 53 PLPILSFTGEKIG-ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAST-----LTRGEVRGGGRKPYS-----QKKTG 121 (288)
Q Consensus 53 ~v~V~~~~G~~~g-~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~T-----KtR~EV~GsgRKP~~-----QKGTG 121 (288)
+++|||++|+.+| +|+|| .||..|+|+||||++|+||++|+|||||+| |||+||||+|||||+ |||||
T Consensus 7 ~v~V~~~~G~~~g~~ieLp-~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~QKGTG 85 (421)
T 2zkr_c 7 LISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTH 85 (421)
T ss_dssp CCEEECTTSSEEEECSSCC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBTTTTBC
T ss_pred eeEEEcCCCCccccEEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCcccccCCCCC
Confidence 7999999999988 89999 999999999999999999999999999999 999999999999999 99999
Q ss_pred ccccCCCCCCCccCcccccCCC-C-CccccccCHHHHHHHHHHHHHHH---------------HHhCCcEEEeccCCCCC
Q 023032 122 RARRGSNRTPLRPGGGVVFGPK-P-RDWSIKINKKEKRLAISTAIASA---------------AAAENTIVVEEFDGKFE 184 (288)
Q Consensus 122 RAR~Gs~rsP~~rGGGvafGPk-P-Rd~~~klNkK~rrlAl~sALs~k---------------~~~~~liVVd~~~~~~e 184 (288)
|||||++++ +|| ||++|||+ | |||+++||+|+|++||++|||++ +.++.|+|||+|. +
T Consensus 86 RARqGs~rs-~~R-GGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~le---~ 160 (421)
T 2zkr_c 86 RSGQGAFGN-MCR-GGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVE---G 160 (421)
T ss_dssp CCSTTCCTT-STT-CCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGG---G
T ss_pred ccCcccccc-ccc-cceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCCc---c
Confidence 999999999 999 99999998 8 99999999999999999999999 7788899999873 6
Q ss_pred CccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcchhh
Q 023032 185 RPKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFD 239 (288)
Q Consensus 185 ~~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~d 239 (288)
.+|||+++++|+++|++.+ ..+|||+++ ++|+++|+||||+|+++++++|||||
T Consensus 161 ~~KTK~~v~~Lk~lgl~~d~~r~~~sk~iRaGkGKmRgRry~~~kg~LiV~~~-d~~l~~A~RNIpgV~v~~v~~LNv~d 239 (421)
T 2zkr_c 161 YKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNE-DNGIIKAFRKHPGITLLNVSKLNILK 239 (421)
T ss_dssp CCCHHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEESS-SSCCCHHHHTSTTCEEEEGGGCCHHH
T ss_pred ccChHHHHHHHHhcCCCcchhhhhhheecccccccccccccccCcceEEEECC-ChhHHHHHhCCCCcEEEeeCCccHHH
Confidence 7999999999999998632 127899877 88999999999999999999999999
Q ss_pred hcCCC----cEEEcHHHHHHHHHhhCC
Q 023032 240 ILDAE----TLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 240 LL~~~----~lViT~~Al~~L~e~~~~ 262 (288)
||+++ .||||++||++|+++|+.
T Consensus 240 Ll~~~h~GR~vV~T~sAle~Lee~~~t 266 (421)
T 2zkr_c 240 LAPGGHVGRFCIWTESAFRKLDDLYGT 266 (421)
T ss_dssp HSGGGCCCCCEEEEHHHHHHHTTC---
T ss_pred HhcCCCCCcEEEEEhHHHHHHHHHHhc
Confidence 99987 999999999999999975
No 10
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=1e-58 Score=423.92 Aligned_cols=194 Identities=24% Similarity=0.362 Sum_probs=180.0
Q ss_pred CceeeccCCCeEeEEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCccc-----ccccceecCCCCCC---cccCCCCccc
Q 023032 53 PLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTAS-----TLTRGEVRGGGRKP---YSQKKTGRAR 124 (288)
Q Consensus 53 ~v~V~~~~G~~~g~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~-----TKtR~EV~GsgRKP---~~QKGTGRAR 124 (288)
+++|||.+|+++|+++|| .+|..|+|+||||++|+||++|+|||||. +|||+|++|+|||| |||| |+||
T Consensus 2 ~v~v~~~~g~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~rqK--G~ar 78 (246)
T 1vq8_C 2 QATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLD--GRAR 78 (246)
T ss_dssp EEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEET--TEEC
T ss_pred eeEEEcCCCCCccEEEhh-HhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccccc--Cccc
Confidence 589999999999999999 99999999999999999999999999999 99999999999999 9999 7775
Q ss_pred cCCCCCCCccCcccccCCCC-CccccccCHHHHHHHHHHHHHHHHH--------------hCCcEEEeccCCCCCCccHH
Q 023032 125 RGSNRTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAA--------------AENTIVVEEFDGKFERPKTK 189 (288)
Q Consensus 125 ~Gs~rsP~~rGGGvafGPkP-Rd~~~klNkK~rrlAl~sALs~k~~--------------~~~liVVd~~~~~~e~~KTK 189 (288)
+||+|||||++|||+| |||++|||||+|++||++|||+++. ++.|+|||++. +.||||
T Consensus 79 ----rsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~~e~~lvVvd~~~---~~~KTK 151 (246)
T 1vq8_C 79 ----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFE---DLVKTQ 151 (246)
T ss_dssp ----SSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGG---GCCCHH
T ss_pred ----cCCccCCCeeecCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhhcccccccccccEEEEeCcc---cCCCHH
Confidence 7999999999999998 9999999999999999999999997 57888889873 679999
Q ss_pred HHHHHHHHcCCCCC------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcchhhhcCC--
Q 023032 190 EFIEAMRRWGLDPK------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDA-- 243 (288)
Q Consensus 190 ~~~~~Lk~lg~~~~------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Lnv~dLL~~-- 243 (288)
+++++|+++|++.| +++|||+++ + +.+|+||||+|+++++++||+||||++
T Consensus 152 ~~~~~L~~lg~~~dv~r~~~~~iragkgk~r~rr~~~~~~~LiV~~~-~--~~~a~RNip~V~v~~~~~lnv~dll~~~~ 228 (246)
T 1vq8_C 152 EVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSD-E--PSTAARNLAGADVATASEVNTEDLAPGGA 228 (246)
T ss_dssp HHHHHHHHTTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEESS-S--CCTTTTTSTTCEEEETTTCCHHHHSGGGC
T ss_pred HHHHHHHhcCCcchhhhhhhhhcccccccccccccccCCcEEEEECc-H--HHHHHcCCCCcEEEeeCCeeHHHHhccCC
Confidence 99999999998621 368999864 3 899999999999999999999999998
Q ss_pred --CcEEEcHHHHHHHHHh
Q 023032 244 --ETLVLTPSTVDFLNGR 259 (288)
Q Consensus 244 --~~lViT~~Al~~L~e~ 259 (288)
++||||++||++|+++
T Consensus 229 ~gr~~v~T~~Al~~l~e~ 246 (246)
T 1vq8_C 229 PGRLTVFTESALAEVAER 246 (246)
T ss_dssp CCCCEEEEHHHHHHGGGC
T ss_pred CCCeEEEEHHHHHHHhhC
Confidence 5599999999999864
No 11
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=4.8e-58 Score=442.04 Aligned_cols=208 Identities=22% Similarity=0.267 Sum_probs=182.3
Q ss_pred CCCceeeccCCCeEe----EEEcCCCCCCCCchHHHHHHHHHHHHhhCCCCccccc-----ccceecCCCCCCc---ccC
Q 023032 51 ASPLPILSFTGEKIG----ETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTL-----TRGEVRGGGRKPY---SQK 118 (288)
Q Consensus 51 ~~~v~V~~~~G~~~g----~ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TK-----tR~EV~GsgRKP~---~QK 118 (288)
-|+++|||.+|+++| +|+|| .||..|+|+||||++|+||++|+|||||+|| ||+||||+||||| |||
T Consensus 6 rp~v~V~~~~G~~~g~~~~~v~Lp-~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQK 84 (405)
T 3iz5_D 6 RPLVSVKALEGDMATDNSSSLALA-EVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVP 84 (405)
T ss_dssp CCEECCBCCSCCCCSSCCCCEECC-GGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCCC
T ss_pred CceEEEEeCCCCcccccceeeccH-HHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCcccccccc
Confidence 358999999999999 79995 9999999999999999999999999999999 9999999999999 999
Q ss_pred --CCCccccCCCCCCCccCcccccCCCC--CccccccCHHHHHHHHHHHHHHHHH------h--------CCcEEEeccC
Q 023032 119 --KTGRARRGSNRTPLRPGGGVVFGPKP--RDWSIKINKKEKRLAISTAIASAAA------A--------ENTIVVEEFD 180 (288)
Q Consensus 119 --GTGRAR~Gs~rsP~~rGGGvafGPkP--Rd~~~klNkK~rrlAl~sALs~k~~------~--------~~liVVd~~~ 180 (288)
||||||+|+ .|+|+|||++|||+| |+|+++||||+|++||++|||+++. . +.++||+|..
T Consensus 85 G~GTgRAr~gs--~~~~~gGGr~fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~~ 162 (405)
T 3iz5_D 85 GGGTHRAGQGA--FGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162 (405)
T ss_dssp CCSSSCCCSCC--SSSSSTTCCCSSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTTS
T ss_pred CCCCCccCCCC--CCCccCCeEEcCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEecC
Confidence 555555555 589999999999998 9999999999999999999999964 1 2345565542
Q ss_pred CCCCCccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCc
Q 023032 181 GKFERPKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTL 235 (288)
Q Consensus 181 ~~~e~~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~L 235 (288)
.+.+|||+++++|++||++.+ +++|||+++.|+|+++|+||||+|+++++++|
T Consensus 163 --~~~~KTK~~v~~Lk~lg~~~d~~k~~~~~~iRaGkGKmRgRry~~~k~~LIV~~~~d~~l~~A~RNIpgV~v~~v~~L 240 (405)
T 3iz5_D 163 --ESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERL 240 (405)
T ss_dssp --SSCCCHHHHHHHHHHHTCHHHHHTTSSCCEECCSGGGGTTCSEECCCCCEEEECCTTTCCCHHHHTSTTCEEEEGGGC
T ss_pred --cccCChHHHHHHHHHcCCccccchhhccccccccccccccccccccCceEEEECCCchHHHHHHhCCCCcEEEecCCc
Confidence 256999999999999998621 25899998889999999999999999999999
Q ss_pred chhhhcCCC----cEEEcHHHHHHHHHhhCCC
Q 023032 236 NLFDILDAE----TLVLTPSTVDFLNGRYGVE 263 (288)
Q Consensus 236 nv~dLL~~~----~lViT~~Al~~L~e~~~~~ 263 (288)
|+||||+++ .||||++||+.|+++|+..
T Consensus 241 Nv~dLl~~~~~gr~vV~T~sAl~~Lee~~~~~ 272 (405)
T 3iz5_D 241 NLLDLAPGGHLGRFVIWTESAFKKLEEVYGTF 272 (405)
T ss_dssp CHHHHSGGGCCCCCEEEEHHHHTTSTTCC---
T ss_pred cHHHHhcCCCCCceEEEEHHHHHHHHHHHccc
Confidence 999999976 5999999999999999853
No 12
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=2.8e-57 Score=431.90 Aligned_cols=200 Identities=25% Similarity=0.379 Sum_probs=189.1
Q ss_pred CceeeccCCCeEeE-EEcCCCCCCCCchHHHHHHHHHHHHhhCCCCcccccccceecCCCCCCcccCCCCcccc------
Q 023032 53 PLPILSFTGEKIGE-TYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARR------ 125 (288)
Q Consensus 53 ~v~V~~~~G~~~g~-ieL~~~vF~~~~~~dllh~~v~~~~a~~RqGTa~TKtR~EV~GsgRKP~~QKGTGRAR~------ 125 (288)
+++|||++|+.+|+ |+|| .||..|+|+||||++|+||++|+|||||+||+|+|| +|+||| ||||||+
T Consensus 5 ~v~V~~~~G~~~g~~i~Lp-~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgev--tg~K~w---GTGRAraripRv~ 78 (362)
T 2wwb_H 5 QVTVHSLTGEATANALPLP-AVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQ--TSAESW---GTGRAVARIPRVG 78 (362)
T ss_dssp CCCCCCSSCSCCSCCCCCC-GGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCS--SCCSSC---CCCSSSCSCSCCC
T ss_pred eeEEEcCCCcCcCceEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCCCCccccc--ccceec---CCCCCeeeccccc
Confidence 69999999999999 9999 999999999999999999999999999999999999 889999 9999999
Q ss_pred --CCCCCCC-----ccCcccccCCCC--CccccccCHHHHHHHHHHHHHHH---------------HHhCCcEEEeccCC
Q 023032 126 --GSNRTPL-----RPGGGVVFGPKP--RDWSIKINKKEKRLAISTAIASA---------------AAAENTIVVEEFDG 181 (288)
Q Consensus 126 --Gs~rsP~-----~rGGGvafGPkP--Rd~~~klNkK~rrlAl~sALs~k---------------~~~~~liVVd~~~~ 181 (288)
|+.|||+ |+|||++|||+| |+|+++||+|+|++|+++|||++ +.++.|+|||++
T Consensus 79 g~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~-- 156 (362)
T 2wwb_H 79 GGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL-- 156 (362)
T ss_dssp SCSSSSCSSTTTSSSCSSSCCSSSSCSSCCCCCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGG--
T ss_pred CCCCCCCcccccCCccCCeEECCCCCCCcchhhhcCHHHHHHHHHHHHHhccchhhhhhccccccccccCcEEEEecc--
Confidence 9999999 999999999998 99999999999999999999999 888999999997
Q ss_pred CCCCccHHHHHHHHHHcCCCCC-------------------------CceEEEEeccchhHHHhhhcCCCceeecCCCcc
Q 023032 182 KFERPKTKEFIEAMRRWGLDPK-------------------------QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLN 236 (288)
Q Consensus 182 ~~e~~KTK~~~~~Lk~lg~~~~-------------------------~k~LiV~~~~~~nl~~s~RNIp~V~v~~~~~Ln 236 (288)
++.+|||+++++|+++|++.+ .++|||+++ ++++.+|+||||+|+++++++||
T Consensus 157 -~~~~KTK~~~~~Lk~lg~~~d~~r~~~~~~iRaGkGKmRgRry~~~k~~LiV~~~-d~~l~~A~RNipgV~v~~v~~LN 234 (362)
T 2wwb_H 157 -ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLN 234 (362)
T ss_dssp -GTCCCHHHHHHHHHHHSCSHHHHHHTSTTSCCCCGGGTTSCCSCCCCCCEEEESS-SCCCCTTTSCSSSCEEEESSSCC
T ss_pred -cccCCHHHHHHHHHhcCCCcchhhhhhhhhcccccccccccccccCCceEEEEcC-ChhHHHHHhcCCCCcEEeeCCcc
Confidence 477999999999999998532 147999865 88999999999999999999999
Q ss_pred hhhhcCC----CcEEEcHHHHHHHHHhhCC
Q 023032 237 LFDILDA----ETLVLTPSTVDFLNGRYGV 262 (288)
Q Consensus 237 v~dLL~~----~~lViT~~Al~~L~e~~~~ 262 (288)
+||||++ |+||||++||++|+++|+.
T Consensus 235 v~dLl~~~~~gr~vV~T~sAl~~Le~~~~~ 264 (362)
T 2wwb_H 235 LLQLAPGAHLGRFVIWTEAAFTKLDQVWGS 264 (362)
T ss_dssp HHHHSTTSCCCCCEECCTTHHHHHHCCSSC
T ss_pred HHHHhcccCcCCEEEEEHHHHHHHHHHHcc
Confidence 9999994 5999999999999999986
No 13
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=52.35 E-value=6.7 Score=35.44 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=43.1
Q ss_pred CCCCcccccccceecCC--CCCCcccCCCCccccCCCCCCCccCcccccCCCC---C-ccc----cccCHHHHHHHHHHH
Q 023032 94 KRRGTASTLTRGEVRGG--GRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKP---R-DWS----IKINKKEKRLAISTA 163 (288)
Q Consensus 94 ~RqGTa~TKtR~EV~Gs--gRKP~~QKGTGRAR~Gs~rsP~~rGGGvafGPkP---R-d~~----~klNkK~rrlAl~sA 163 (288)
++.....-..++|++|+ +.++| |||||++ |.|=..|-| +++|.- + -+- .+...|+=+.-.+.|
T Consensus 38 ~~an~Rqgt~~~~~aG~kt~ae~~---GtGR~~a---ri~rqKG~a-rrsP~~rGGg~~~gPkp~R~~~~klnkK~rrlA 110 (246)
T 1vq8_C 38 AQANRKQDYGSDEYAGLRTPAESF---GSGRGQA---HVPKLDGRA-RRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLA 110 (246)
T ss_dssp HHHHTCCCCCCCTTTTTCCCCBCC---CSSSSCC---CCCEETTEE-CSSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHH
T ss_pred HHHhcccCcccccccCcccceeec---cCCCCcc---ccccccCcc-ccCCccCCCeeecCCCCCccchhhcCHHHHHHH
Confidence 33334444568999999 99999 9999884 111112555 688863 2 232 233566667777777
Q ss_pred HHHHHH
Q 023032 164 IASAAA 169 (288)
Q Consensus 164 Ls~k~~ 169 (288)
|...+.
T Consensus 111 l~sALs 116 (246)
T 1vq8_C 111 VRSALA 116 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=48.44 E-value=6.8 Score=35.41 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=8.9
Q ss_pred HHHhh-hcCCCceeecCC
Q 023032 217 VEKSS-RNIGTLKMLTPR 233 (288)
Q Consensus 217 l~~s~-RNIp~V~v~~~~ 233 (288)
+..+. .|+|.+..+...
T Consensus 294 l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHCTTCCEEECT
T ss_pred HHHHHHhcCCCceEEEcc
Confidence 33333 556666655543
No 15
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=44.50 E-value=34 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
+|+|+..||+. +-++++.|+-...+|..-...+.++|+.+.
T Consensus 171 QRv~iAraL~~---~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 171 KRNDILQMAVL---EPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HHHHHHHHHHH---CCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 56778877765 357889998776677667778888998873
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=44.26 E-value=6.4 Score=35.62 Aligned_cols=8 Identities=25% Similarity=0.015 Sum_probs=3.4
Q ss_pred CCCceeec
Q 023032 224 IGTLKMLT 231 (288)
Q Consensus 224 Ip~V~v~~ 231 (288)
.+.+..+.
T Consensus 273 ~~~L~~L~ 280 (386)
T 2ca6_A 273 NIGLQTLR 280 (386)
T ss_dssp SCCCCEEE
T ss_pred CCCeEEEE
Confidence 44444443
No 17
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=41.65 E-value=35 Score=29.67 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+|+..||+. +-+++++|+-...++..-...+.++|+.+.-. ...+++++++
T Consensus 149 kQrv~iAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd 202 (250)
T 2d2e_A 149 KKRNEILQLLVL---EPTYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHY 202 (250)
T ss_dssp HHHHHHHHHHHH---CCSEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSS
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 456788888865 36788999876667766677888899887321 2234555544
No 18
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=41.11 E-value=23 Score=32.46 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|++|..+|...... .++++|+....++......+.++|+.+. . +..+++|+++
T Consensus 301 ~qrl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~ 355 (415)
T 4aby_A 301 LSRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHL 355 (415)
T ss_dssp HHHHHHHHHHHHCCSS-SEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSC
T ss_pred HHHHHHHHHHHhCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCc
Confidence 3456666666544321 7889999877777777778888999885 2 2235556554
No 19
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=37.77 E-value=75 Score=26.03 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=37.0
Q ss_pred HHhCCcEEEec--cCCCCCCccH-HHHHHHHHHcCCCCCCc-eEEEEe-ccchhHHHhhhcCCCceeecCCCcc
Q 023032 168 AAAENTIVVEE--FDGKFERPKT-KEFIEAMRRWGLDPKQK-ATFLVM-EVSENVEKSSRNIGTLKMLTPRTLN 236 (288)
Q Consensus 168 ~~~~~liVVd~--~~~~~e~~KT-K~~~~~Lk~lg~~~~~k-~LiV~~-~~~~nl~~s~RNIp~V~v~~~~~Ln 236 (288)
+.+-.++++|+ -...++ +.+ ..+.++|+.. .. ++++++ ..+.++.....+-+++.++.....|
T Consensus 97 ~~~p~llilDEigp~~~ld-~~~~~~l~~~l~~~-----~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~ 164 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDP-----NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCT-----TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTT
T ss_pred ccCCCEEEEeCCCCcccCC-HHHHHHHHHHHhcC-----CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcC
Confidence 34567899998 332233 333 3344445431 23 555553 4566777777888888888766665
No 20
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=37.73 E-value=47 Score=29.09 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||.. +-.++++|+-...++..-.+.+.++|+.+.- ...+++|+++
T Consensus 162 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~ 213 (260)
T 2ghi_A 162 QRIAIARCLLK---DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHR 213 (260)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSS
T ss_pred HHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC
Confidence 56778777765 3578899987666776667778888888732 2234555544
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=37.04 E-value=26 Score=30.74 Aligned_cols=43 Identities=5% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHh----CCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023032 156 KRLAISTAIASAAAA----ENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~----~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|+++..||+..-.+ +.+++.|+-...++..-.+.+.++|+.+
T Consensus 133 qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 133 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp HHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 567888888877542 2289999876667766677788888876
No 22
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=36.38 E-value=62 Score=26.83 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=37.3
Q ss_pred ccccCHHHH-HHHHHHHHHHH-HHhCCcEEEeccCCCCCCccHHHHHHHHHHcC
Q 023032 148 SIKINKKEK-RLAISTAIASA-AAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199 (288)
Q Consensus 148 ~~klNkK~r-rlAl~sALs~k-~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg 199 (288)
...+.--+| ++|+..||+.. +....++++|+....++....+.+.++|+.+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~ 115 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS 115 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc
Confidence 345555544 56777888766 44457889998876777777888888998874
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.23 E-value=25 Score=30.76 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
+|+|+..||+. +-++++.|+-...++..-.+.+.++|+++.-. ...+++++++.+
T Consensus 160 Qrv~iAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~ 214 (257)
T 1g6h_A 160 KLVEIGRALMT---NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD 214 (257)
T ss_dssp HHHHHHHHHHT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS
T ss_pred HHHHHHHHHHc---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH
Confidence 45677777664 35788999877667777777888888876321 123555555543
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=35.61 E-value=40 Score=29.80 Aligned_cols=54 Identities=4% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+||..||.. +-+++++|+-...++..-.+.+.++|+.+.-.....+++|+.+
T Consensus 163 QRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 163 QAVALARALIR---KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHHHHHHHhc---CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 45677777654 3578899987666776666778888988732111234555444
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=33.82 E-value=19 Score=32.30 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=38.4
Q ss_pred ccCHHH-HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023032 150 KINKKE-KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 150 klNkK~-rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
.+.-=+ +|+|+..||+. +-++++.|+-...++..-...+.++|+.+.-.....+++|+.+.+
T Consensus 143 ~LSgGqkQRv~iAraL~~---~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 143 CLSFGQKKRVAIAGVLVM---EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp GSCHHHHHHHHHHHHHTT---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred cCCHHHHHHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 344433 35777777764 357889998766677666678888887763111123566666544
No 26
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=33.52 E-value=17 Score=34.29 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023032 157 RLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 157 rlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
|.|+..||+. +-++++.|+-...++..-++.+.++|+++.-.....+++|+++.
T Consensus 171 RVaIArAL~~---~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 171 RVAIARALAS---NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp HHHHHHHTTT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred HHHHHHHHhc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4555555543 24788899876667777778888888876321112366666654
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=33.45 E-value=32 Score=30.18 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+.. -+++++|+-...+|..-.+.+.++|+.+.-.....+++++++
T Consensus 135 qrv~lAraL~~~---p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 135 QLILIARAIASE---CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHHHHTT---CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 457777777653 578899987666776667778888887622101235555554
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=33.00 E-value=28 Score=30.62 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+. +-++++.|+-...++......+.++|+.+.-. ...+++++++
T Consensus 160 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd 212 (262)
T 1b0u_A 160 QRVSIARALAM---EPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHHHHT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 45677777764 35788899876667766677888888876211 1235555554
No 29
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.67 E-value=28 Score=30.11 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+|+..||+. +-++++.|+-...++..-.+.+.++|+.+.-. ...+++++++.
T Consensus 146 qrv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~ 199 (240)
T 1ji0_A 146 QMLAIGRALMS---RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNA 199 (240)
T ss_dssp HHHHHHHHHTT---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred HHHHHHHHHHc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH
Confidence 45666666654 35788899876667766677788888876311 12356666553
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=32.39 E-value=41 Score=29.02 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 155 EKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 155 ~rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
.+|+|+..||+.. -+++++|+-...++..-.+.+.++|+.+. . ...+++++++
T Consensus 145 ~qrv~lAral~~~---p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~ 197 (243)
T 1mv5_A 145 RQRLAIARAFLRN---PKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHR 197 (243)
T ss_dssp HHHHHHHHHHHHC---CSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCS
T ss_pred HHHHHHHHHHhcC---CCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCC
Confidence 3467777777653 57889998776777766777888888763 2 2234555544
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=32.19 E-value=33 Score=29.89 Aligned_cols=52 Identities=12% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+. +-+++++|+-...++....+.+.++|+.+. . ...+++++.+
T Consensus 152 qRv~iAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~ 203 (247)
T 2ff7_A 152 QRIAIARALVN---NPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHR 203 (247)
T ss_dssp HHHHHHHHHTT---CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSS
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCC
Confidence 45677777654 357888998776677777778888888872 1 2234555544
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=31.75 E-value=64 Score=28.49 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+|+..||+.. -+++++|+-...++..-.+.+.++|+.+.- .+++++++.
T Consensus 135 qRv~lAraL~~~---p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~ 185 (263)
T 2pjz_A 135 VLVRTSLALASQ---PEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL 185 (263)
T ss_dssp HHHHHHHHHHTC---CSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG
T ss_pred HHHHHHHHHHhC---CCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH
Confidence 456777777653 578889987666776666778888988731 456666553
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=31.37 E-value=31 Score=30.37 Aligned_cols=54 Identities=13% Similarity=0.378 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+|+..||+. +-++++.|+-...++..-.+.+.++|+.+.-. ...+++++++.
T Consensus 145 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~ 198 (266)
T 2yz2_A 145 RRVAIASVIVH---EPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI 198 (266)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC
T ss_pred HHHHHHHHHHc---CCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 45666666654 35788899877667766677888888876211 12345555543
No 34
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.63 E-value=20 Score=30.99 Aligned_cols=54 Identities=11% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+. +-++++.|+-...++..-...+.++|+++.-.....+++|+++
T Consensus 152 QRv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 152 QRVAIARALAN---NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 45788887764 3678899987766776677788888887631101135555554
No 35
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.15 E-value=1.3e+02 Score=27.38 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=38.2
Q ss_pred cCHHHHH---HHHHHHHHHHHHhC--CcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 151 INKKEKR---LAISTAIASAAAAE--NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 151 lNkK~rr---lAl~sALs~k~~~~--~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+..-+++ +|++.|++..+..+ .++++|+....++......+.++|+.+.- ...+++++++
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~ 345 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHH 345 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEECh
Confidence 4444443 56677777666544 67888987766776666778888888642 2235555544
No 36
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=29.38 E-value=29 Score=30.78 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 157 RLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 157 rlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
|+|+..||+. +-++++.|+-...+|..-.+.+.++|+.+.-. ...+++++.+
T Consensus 167 Rv~lAraL~~---~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd 218 (263)
T 2olj_A 167 RVAIARALAM---EPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE 218 (263)
T ss_dssp HHHHHHHHTT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred HHHHHHHHHC---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 4455555443 34788889876667766677788888876211 1234555444
No 37
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=28.38 E-value=38 Score=30.20 Aligned_cols=54 Identities=7% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCce--EEEEecc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKA--TFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~--LiV~~~~ 213 (288)
+|+|+..||+. +-++++.|+-...+|..-.+.+.++|+.+.-. ...+ ++++.+.
T Consensus 168 qRv~lAraL~~---~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~ 223 (279)
T 2ihy_A 168 QRVMIARALMG---QPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI 223 (279)
T ss_dssp HHHHHHHHHHT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG
T ss_pred HHHHHHHHHhC---CCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH
Confidence 45666666654 35788899877667766677788888776211 1236 6666553
No 38
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=28.24 E-value=26 Score=32.11 Aligned_cols=44 Identities=5% Similarity=-0.070 Sum_probs=23.1
Q ss_pred cCCCceeecCCCc-chhhhcCCCcEEEcHHHHHHHHHhhCCCCCC
Q 023032 223 NIGTLKMLTPRTL-NLFDILDAETLVLTPSTVDFLNGRYGVEFEG 266 (288)
Q Consensus 223 NIp~V~v~~~~~L-nv~dLL~~~~lViT~~Al~~L~e~~~~~~~~ 266 (288)
.+|.+-++....- ..+-.++.+.--+|.+.|+.+-+.+-.....
T Consensus 308 ~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~ 352 (367)
T 3us3_A 308 SAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEIN 352 (367)
T ss_dssp TSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSC
T ss_pred CCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcC
Confidence 5677766665432 1222233211246888888777666444333
No 39
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=26.80 E-value=28 Score=30.84 Aligned_cols=49 Identities=10% Similarity=0.206 Sum_probs=32.5
Q ss_pred ccCHHHH-HHHHHHHHHHHH---HhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023032 150 KINKKEK-RLAISTAIASAA---AAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 150 klNkK~r-rlAl~sALs~k~---~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.+.-=+| |+|+..||+.-+ .+-++++.|+-...++..-...+.++|+.+
T Consensus 141 ~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 3444433 577777776511 035688899876667766677888888876
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=26.48 E-value=74 Score=29.44 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
+|.||..||+. +-++++.|+-...+|..-...+.++|+++--.....+++|+++.+
T Consensus 147 QRvalAraL~~---~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 147 QRVALARALVK---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHHHHHHHh---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 35666666654 357888998665677666667777777651100113566665533
No 41
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=26.32 E-value=34 Score=29.27 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||.. +-++++.|+-...+|..-.+.+.++|+.+.-. ...+++++++
T Consensus 147 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd 199 (224)
T 2pcj_A 147 QRVAIARALAN---EPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHE 199 (224)
T ss_dssp HHHHHHHHTTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 35666666653 35788899876667766677788888876221 1234555444
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=25.62 E-value=27 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+. +-++++.|+-...++..-.+.+.++|+.+.-.....+++++++
T Consensus 133 qRv~lAral~~---~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 133 QRVALARALVI---QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp HHHHHHHHHTT---CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45666666654 3578889987666776666778888877621101135666655
No 43
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.19 E-value=1.3e+02 Score=27.58 Aligned_cols=56 Identities=9% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHHH-HHH--HhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIA-SAA--AAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs-~k~--~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+++..||+ +++ .+-.++++|+-...++..-...+.++|+.+.-. ...+++|+++
T Consensus 286 qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~ 344 (365)
T 3qf7_A 286 ALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHD 344 (365)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESC
T ss_pred HHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 3567777776 333 234678899876667766677888888887421 2235555554
No 44
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.67 E-value=43 Score=28.66 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEecc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV 213 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~ 213 (288)
+|+++..||+. +-+++++|+-...++..-...+.++|+.+.-. ...+++++.+.
T Consensus 140 qrv~laraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~ 193 (214)
T 1sgw_A 140 RRVQLASTLLV---NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE 193 (214)
T ss_dssp HHHHHHHHTTS---CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC
T ss_pred HHHHHHHHHHh---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 45666666653 45788999877677777777888888876311 12355555543
No 45
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.53 E-value=85 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=33.7
Q ss_pred cccCHHHH-HHHHHHHHHHH-HHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023032 149 IKINKKEK-RLAISTAIASA-AAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 149 ~klNkK~r-rlAl~sALs~k-~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
..+..-++ ++++..||+.. +....++++|+....++....+.+.++|+.+
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 35555544 45666666532 2334788999987677767777888888887
No 46
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.48 E-value=15 Score=33.98 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=0.0
Q ss_pred ccccc-cccccccCCCCCCCCccCCC
Q 023032 8 LSFFS-STIFLTSSSNKVPKPIQLAK 32 (288)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 32 (288)
..|+| +..|+++....++++.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (293)
T 3bbo_G 17 SLFSSKSRNFSSKPILKLPSSSHSQT 42 (293)
T ss_dssp --------------------------
T ss_pred cccccCccccCccchhhcCCCCCccc
Confidence 33444 55677777777776655443
No 47
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=23.17 E-value=85 Score=29.62 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
.|.||..||+. +-++++.|+-...++..-...+.+.|+++
T Consensus 140 QRVaiArAL~~---~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 140 QRVAIGRTLVA---EPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp HHHHHHHHHHH---CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 45777777764 35788999865556655455666677665
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.06 E-value=49 Score=29.08 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+. +-+++++|+-...++..-.+.+.++|+.+.-. ...+++++.+
T Consensus 153 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd 205 (256)
T 1vpl_A 153 RKLLIARALMV---NPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHN 205 (256)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 34666666653 35788899876667766677788888876311 1234555544
No 49
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.91 E-value=29 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=11.9
Q ss_pred hhHHHhhhcCCCceeec
Q 023032 215 ENVEKSSRNIGTLKMLT 231 (288)
Q Consensus 215 ~nl~~s~RNIp~V~v~~ 231 (288)
..+..+.++....+.+.
T Consensus 77 ~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 77 EHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp HHHHHHHHTCSTTGGGT
T ss_pred HHHHHHHhcCchhhhHh
Confidence 45778888877766654
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=22.51 E-value=93 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHH
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMR 196 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk 196 (288)
+|+|+..||... -+++++|+-...++..-.+.+.++|.
T Consensus 134 qRv~lAraL~~~---p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 134 QRVSLARAVYSN---ADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHHHHHHHHHHC---CSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC---CCEEEEeCcccccCHHHHHHHHHHHH
Confidence 457777777653 57888998765666544556667663
No 51
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=21.49 E-value=21 Score=29.92 Aligned_cols=9 Identities=0% Similarity=-0.352 Sum_probs=3.6
Q ss_pred HhhCCCCCC
Q 023032 258 GRYGVEFEG 266 (288)
Q Consensus 258 e~~~~~~~~ 266 (288)
++|+....+
T Consensus 146 ~~~a~~~~~ 154 (169)
T 1ayz_A 146 EKSWEDDMD 154 (169)
T ss_dssp HHHHHHHTC
T ss_pred HHHcCCCcc
Confidence 344433333
No 52
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=20.78 E-value=47 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRW 198 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~l 198 (288)
+|.||..||+.. -++++.|+-...+|..-...+.++|+++
T Consensus 146 QRvalArAL~~~---P~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 146 QRVALGRAIVRK---PQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp HHHHHHHHHHTC---CSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 456777777653 5788899865556655555666677665
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=20.62 E-value=43 Score=33.37 Aligned_cols=56 Identities=5% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
+|+|+..||+......++++.|+-...++..-...+.++|+.+.-. ...+++|+++
T Consensus 550 qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd 605 (670)
T 3ux8_A 550 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHN 605 (670)
T ss_dssp HHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCC
T ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4677777776654333588999877667766677888888876321 1235555554
No 54
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.39 E-value=20 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=10.2
Q ss_pred HhhCCCCCCCCCchhh
Q 023032 258 GRYGVEFEGDGDEEEE 273 (288)
Q Consensus 258 e~~~~~~~~~~~~~~~ 273 (288)
+|+|...||-|||+.|
T Consensus 16 erlgndvfeweddesd 31 (34)
T 2li5_B 16 ERLGNDVFEWEDDESD 31 (34)
T ss_dssp SSCCGGGCCSSCTTSG
T ss_pred HHhcCccccccccccc
Confidence 5777778885555433
No 55
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=20.30 E-value=75 Score=30.22 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHHHHhhCC-CCcccccccceecCCCCCCc-----ccCCCCcccc
Q 023032 74 AAPDTARAVVHRALITDMQNKR-RGTASTLTRGEVRGGGRKPY-----SQKKTGRARR 125 (288)
Q Consensus 74 F~~~~~~dllh~~v~~~~a~~R-qGTa~TKtR~EV~GsgRKP~-----~QKGTGRAR~ 125 (288)
+..++-..++.......++... .-++...+.++.||+||--. +|+||.|+.+
T Consensus 30 ~r~dlih~vv~~~~an~RQgt~~tk~rgevtg~K~wGTGRAraripRv~g~Gs~RSp~ 87 (362)
T 2wwb_H 30 IRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQ 87 (362)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSCSCSCCCSCSSSSCSS
T ss_pred ccHHHHHHHHHHHHHhccCCCCCCCcccccccceecCCCCCeeecccccCCCCCCCcc
Confidence 4677777777777777777753 34444446677778886543 5677777766
No 56
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.29 E-value=40 Score=31.31 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEeccc
Q 023032 156 KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS 214 (288)
Q Consensus 156 rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~~~ 214 (288)
+|.||..||+. +-++++.|+-...+|..-...+.++|+++.-.....+++|+++.+
T Consensus 134 QRvalAraL~~---~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 134 QRVALARALVT---NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp HHHHHHHHTTS---CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred HHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677766654 357888998655566555566777777652110113566665533
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=20.27 E-value=1e+02 Score=30.02 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=38.2
Q ss_pred ccccCHHH-HHHHHHHHHHHHHHhCCcEEEeccCCCCCCccHHHHHHHHHHcCCCCCCceEEEEec
Q 023032 148 SIKINKKE-KRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVME 212 (288)
Q Consensus 148 ~~klNkK~-rrlAl~sALs~k~~~~~liVVd~~~~~~e~~KTK~~~~~Lk~lg~~~~~k~LiV~~~ 212 (288)
...|.-=+ +|+||..||+. +-++++.|+-...++..-...+.++|+.+.-. ...+++|.++
T Consensus 156 ~~~LSgGekQRv~iAraL~~---~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd 217 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLR---NATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHD 217 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHS---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred hhhCCHHHHHHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 34454443 45677777764 45789999877667766677888888876221 1134555444
Done!