RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023032
(288 letters)
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 197
Score = 134 bits (337), Expect = 4e-39
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 10/203 (4%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ ++ G + E L L P+ V+H + + ++RRGTAST TR +V GRK
Sbjct: 3 INVIGQNGGRTIE--LPL----PEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRK 56
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
Y QK TG AR G P GGGV FGPKPR + + ++ ++L ++ AIAS
Sbjct: 57 MYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKL 116
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
+ V+ FD KTK FI ++ GLD +K + + EN +++RN+ + +L
Sbjct: 117 VAVDGFD--IADAKTKNFISWAKQNGLDGTEKVLLVTDD--ENTRRAARNVSWVSVLPVA 172
Query: 234 TLNLFDILDAETLVLTPSTVDFL 256
+N++DIL + LV+ + ++ +
Sbjct: 173 GVNVYDILRHDRLVIDAAALEIV 195
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
[TaxId: 562]}
Length = 198
Score = 129 bits (326), Expect = 1e-37
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 80 RAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVV 139
A+VH+ ++ R+GT + TR EV G G+KP+ QK TGRAR GS ++P+ GGV
Sbjct: 25 EALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVT 84
Query: 140 FGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFDGKFERPKTKEFIEAMRRWG 199
F +P+D S K+NKK R A+ + ++ + IVVE+F E PKTK + ++
Sbjct: 85 FAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKF--SVEAPKTKLLAQKLKDMA 142
Query: 200 LDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFL 256
L+ + E+ EN+ ++RN+ + + ++ ++ + +V+T V +
Sbjct: 143 LED---VLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQV 196
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 126 bits (317), Expect = 6e-36
Identities = 88/225 (39%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+ +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRK
Sbjct: 3 VDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRK 62
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
P+ QK TGRAR GS R+P+ GGVV GPKPRDWS K+NKK K+LA+ +A++
Sbjct: 63 PWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKL 122
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLV--MEVSENVEKSSRNIGTLKMLT 231
+V D K ERPKTK E ++ L K+ L E NV+ S RN+ +K++
Sbjct: 123 LV--LDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVII 180
Query: 232 PRT---------------LNLFDILDAETLVLTPSTVDFLNGRYG 261
LN+FD+L + LVLT V + G
Sbjct: 181 ADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG 225
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 124 bits (313), Expect = 1e-35
Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 9/208 (4%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRK 113
+P+LS +G + L + ++ + + +RRGTAST TRGEV GRK
Sbjct: 9 IPVLSPSGRRELAADLPAE-----INPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRK 63
Query: 114 PYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENT 173
+ QK TGRAR G P+ GGGVVFGPKPRD+S + KK ++ ++ A+A A
Sbjct: 64 IWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKL 123
Query: 174 IVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPR 233
++V KTKEF+ + GLD + L++ +E V +++RN+ + L P
Sbjct: 124 LLV--EAFAGVNGKTKEFLAWAKEAGLDGSES--VLLVTGNELVRRAARNLPWVVTLAPE 179
Query: 234 TLNLFDILDAETLVLTPSTVDFLNGRYG 261
LN++DI+ E LV+ + R G
Sbjct: 180 GLNVYDIVRTERLVMDLDAWEVFQNRIG 207
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 246
Score = 119 bits (299), Expect = 4e-33
Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 40/245 (16%)
Query: 54 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTR--GEVRGGG 111
I G GE L P ++ +A+ N+++ S
Sbjct: 3 ATIYDLDGNTDGEVDLPDVFETP-VRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESF 61
Query: 112 RKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKP-RDWSIKINKKEKRLAISTAIASAAAA 170
Q + + R P G PK +D S+ +N KE++LA+ +A+A+ A A
Sbjct: 62 GSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADA 121
Query: 171 ENT-----------IVVEEFDGKFERPKTKEFIEAMRRWGLDPK---------------- 203
+ + V D + KT+E + + +
Sbjct: 122 DLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSA 181
Query: 204 -----QKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETL----VLTPSTVD 254
++ ++ S+ ++RN+ + T +N D+ V T S +
Sbjct: 182 RGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALA 241
Query: 255 FLNGR 259
+ R
Sbjct: 242 EVAER 246
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 32.5 bits (74), Expect = 0.021
Identities = 24/91 (26%), Positives = 26/91 (28%), Gaps = 9/91 (9%)
Query: 76 PDTARAVVHRALITDMQNKRRGTASTL----TRGEVRGGGRKPYSQKKTGRARRGS-NRT 130
A V D +N G A R VRG P G R R
Sbjct: 60 HGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRP 119
Query: 131 PLRPGGGVVFGPKPRDWSIKINKKEKRLAIS 161
P P G G K R K K R I+
Sbjct: 120 PASPWGWQTKGLKTR----KRRKPSSRFIIA 146
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 95
Score = 25.8 bits (57), Expect = 2.8
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 16/82 (19%)
Query: 94 KRRGTASTLTRGEVRGGGRKPYSQ-------------KKTGRARRGSNRTPLRPGGGVVF 140
GT L R G P + K G G V
Sbjct: 6 PLEGTRGKLKNK-PRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVE 64
Query: 141 GPKPRDWSIKINK--KEKRLAI 160
G + + + I KEK + +
Sbjct: 65 GKQGDAYKVDIVDGGKEKTIIV 86
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 27.0 bits (59), Expect = 2.8
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 11/119 (9%)
Query: 2 AASFSSLS----FFSSTIFLTSSSNKVPKPIQLAKPN------SLINLPPKPLIVSSQLA 51
A + LS + T+ + N + L V
Sbjct: 121 ARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPG 180
Query: 52 SPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGG 110
+ +L + A + V A + + L+ +V GG
Sbjct: 181 QGVSLLLEADREYAREAGAPALLARLPSVLVEAGAG-GGHRVLYWSSLERLSTADVEGG 238
>d1vqo21 a.137.1.1 (2:1-49) Ribosomal protein L39e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 49
Score = 24.4 bits (53), Expect = 3.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 111 GRKPYSQKKT-GRARRGSNRTP----LRPGGGVVFGPKPRDW 147
G+K + KK + ++R P L+ V K R W
Sbjct: 1 GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHW 42
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 26.4 bits (57), Expect = 4.9
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 132 LRPGGGVVFGPKPRDWSIKINKKEKRLAISTAIASAAAAENTIVVEEFD 180
G ++ G + + R+ + TAIA+ A+ + ++ +
Sbjct: 360 PTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAE 408
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2
{Pea seedling (Pisum sativum) [TaxId: 3888]}
Length = 108
Score = 25.1 bits (55), Expect = 6.0
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 173 TIVVEEFDGKFERPKT-KEFIEAMRRWGLDPKQ 204
+ V+E + P FI+++++ GL+ +
Sbjct: 4 ILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSE 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.359
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,001,335
Number of extensions: 45929
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)