Query 023033
Match_columns 288
No_of_seqs 232 out of 1177
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02758 oxidoreductase, 2OG-F 100.0 1.6E-71 3.6E-76 507.6 27.2 275 1-281 14-299 (361)
2 PLN02216 protein SRG1 100.0 8.3E-71 1.8E-75 502.2 28.1 274 2-281 15-297 (357)
3 PLN02947 oxidoreductase 100.0 2.8E-70 6E-75 500.5 26.6 272 2-281 26-311 (374)
4 PLN02904 oxidoreductase 100.0 1.9E-69 4.1E-74 492.9 28.0 272 2-281 14-294 (357)
5 PLN03178 leucoanthocyanidin di 100.0 1.8E-69 3.9E-74 494.7 27.7 277 3-281 7-297 (360)
6 PLN02912 oxidoreductase, 2OG-F 100.0 3.5E-69 7.6E-74 490.0 27.1 269 4-281 8-283 (348)
7 PLN02393 leucoanthocyanidin di 100.0 4.1E-69 8.9E-74 492.3 27.4 277 2-281 13-300 (362)
8 PLN00417 oxidoreductase, 2OG-F 100.0 3.1E-68 6.8E-73 483.7 29.4 271 4-281 9-290 (348)
9 PLN02276 gibberellin 20-oxidas 100.0 2.4E-68 5.2E-73 487.1 28.7 262 14-281 18-292 (361)
10 PLN02515 naringenin,2-oxogluta 100.0 8E-68 1.7E-72 482.1 27.1 268 7-280 6-282 (358)
11 PLN02639 oxidoreductase, 2OG-F 100.0 9E-68 2E-72 479.8 27.1 267 5-281 3-277 (337)
12 PLN02254 gibberellin 3-beta-di 100.0 1.4E-67 3.1E-72 480.4 27.4 257 13-281 27-297 (358)
13 COG3491 PcbC Isopenicillin N s 100.0 6.5E-67 1.4E-71 450.1 24.8 241 35-280 3-260 (322)
14 PLN02704 flavonol synthase 100.0 9.2E-67 2E-71 472.8 26.9 273 2-282 4-286 (335)
15 PLN02750 oxidoreductase, 2OG-F 100.0 4.1E-66 8.9E-71 470.3 27.6 258 14-281 2-281 (345)
16 PTZ00273 oxidase reductase; Pr 100.0 1.9E-65 4.1E-70 462.5 26.4 243 35-281 3-265 (320)
17 PLN02485 oxidoreductase 100.0 5.3E-64 1.1E-68 454.5 26.3 244 35-281 5-276 (329)
18 PLN02997 flavonol synthase 100.0 8.6E-64 1.9E-68 450.4 27.2 235 34-281 29-269 (325)
19 KOG0143 Iron/ascorbate family 100.0 3.7E-63 8E-68 444.7 27.2 243 34-281 14-264 (322)
20 PLN02299 1-aminocyclopropane-1 100.0 8.7E-63 1.9E-67 443.5 25.3 238 34-281 3-245 (321)
21 PLN03002 oxidoreductase, 2OG-F 100.0 2.8E-62 6E-67 442.8 25.5 238 35-282 12-275 (332)
22 PLN02156 gibberellin 2-beta-di 100.0 1.5E-61 3.2E-66 436.9 26.6 230 37-281 26-267 (335)
23 PLN02984 oxidoreductase, 2OG-F 100.0 1.2E-61 2.7E-66 438.4 25.2 229 35-277 36-282 (341)
24 PLN02403 aminocyclopropanecarb 100.0 5.8E-61 1.3E-65 427.8 25.4 234 37-281 2-241 (303)
25 PLN02365 2-oxoglutarate-depend 100.0 1.3E-58 2.7E-63 413.7 24.5 223 36-281 4-238 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 4.5E-51 9.7E-56 357.2 19.6 191 87-281 2-202 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 8E-24 1.7E-28 163.6 9.1 95 38-138 1-96 (116)
28 PLN03176 flavanone-3-hydroxyla 99.9 9.2E-23 2E-27 157.7 11.4 104 14-119 13-117 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.9 6.7E-22 1.5E-26 148.2 8.1 89 195-287 2-94 (98)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 92.2 0.13 2.9E-06 37.7 2.9 65 197-278 1-86 (100)
31 smart00702 P4Hc Prolyl 4-hydro 84.0 8.1 0.00018 31.4 8.4 79 164-256 60-152 (178)
32 PRK05467 Fe(II)-dependent oxyg 79.6 12 0.00026 32.1 8.1 34 231-277 129-163 (226)
33 PF07350 DUF1479: Protein of u 70.8 4.1 8.9E-05 38.1 3.1 54 35-95 47-100 (416)
34 PRK08333 L-fuculose phosphate 66.5 11 0.00024 31.0 4.7 50 37-92 120-171 (184)
35 PRK08130 putative aldolase; Va 63.0 15 0.00032 31.1 4.9 50 37-92 127-178 (213)
36 TIGR02409 carnitine_bodg gamma 62.7 11 0.00024 34.8 4.3 52 35-94 107-158 (366)
37 PRK05874 L-fuculose-phosphate 56.9 20 0.00044 30.5 4.7 36 37-78 127-162 (217)
38 PRK15401 alpha-ketoglutarate-d 53.3 51 0.0011 28.0 6.4 61 197-267 118-189 (213)
39 TIGR02410 carnitine_TMLD trime 53.1 21 0.00045 33.0 4.4 52 36-94 99-150 (362)
40 COG2140 Thermophilic glucose-6 52.6 29 0.00063 29.3 4.7 62 196-262 91-155 (209)
41 PF13532 2OG-FeII_Oxy_2: 2OG-F 51.9 37 0.0008 27.8 5.4 63 196-267 98-170 (194)
42 TIGR00568 alkb DNA alkylation 50.1 1.4E+02 0.003 24.3 8.7 55 197-259 97-162 (169)
43 PRK08087 L-fuculose phosphate 45.1 41 0.0009 28.5 4.7 50 37-92 122-173 (215)
44 PRK08660 L-fuculose phosphate 44.8 48 0.001 27.2 4.9 49 37-92 115-165 (181)
45 PRK03634 rhamnulose-1-phosphat 44.5 40 0.00087 29.8 4.7 50 37-92 179-230 (274)
46 cd00491 4Oxalocrotonate_Tautom 44.4 34 0.00073 21.9 3.2 29 39-67 1-29 (58)
47 TIGR02624 rhamnu_1P_ald rhamnu 43.5 40 0.00087 29.8 4.5 50 37-92 177-228 (270)
48 PRK02289 4-oxalocrotonate taut 42.6 39 0.00084 22.1 3.3 30 39-68 2-31 (60)
49 PRK06833 L-fuculose phosphate 42.5 39 0.00085 28.6 4.2 50 37-92 124-175 (214)
50 PF00596 Aldolase_II: Class II 41.4 22 0.00048 29.1 2.4 50 36-91 122-174 (184)
51 PRK06661 hypothetical protein; 41.0 44 0.00096 28.7 4.3 37 56-92 138-176 (231)
52 COG3695 Predicted methylated D 40.3 14 0.0003 27.4 0.9 29 255-284 41-69 (103)
53 PRK06755 hypothetical protein; 39.8 38 0.00083 28.7 3.7 50 37-92 136-187 (209)
54 PRK02220 4-oxalocrotonate taut 38.7 46 0.00099 21.6 3.2 29 39-67 2-30 (61)
55 PF01361 Tautomerase: Tautomer 36.3 38 0.00082 22.0 2.5 29 39-67 1-29 (60)
56 PF11243 DUF3045: Protein of u 35.5 34 0.00073 24.1 2.1 21 59-79 36-56 (89)
57 TIGR00013 taut 4-oxalocrotonat 35.4 56 0.0012 21.3 3.3 29 39-67 1-30 (63)
58 COG3128 PiuC Uncharacterized i 34.7 2E+02 0.0044 24.0 6.8 8 271-278 160-167 (229)
59 TIGR03328 salvage_mtnB methylt 34.7 67 0.0014 26.7 4.3 48 37-91 126-178 (193)
60 PF06820 Phage_fiber_C: Putati 34.1 51 0.0011 21.8 2.6 36 211-246 15-61 (64)
61 cd00398 Aldolase_II Class II A 33.1 46 0.00099 28.0 3.1 53 36-92 121-175 (209)
62 PRK05834 hypothetical protein; 33.0 61 0.0013 27.1 3.8 37 56-92 136-176 (194)
63 PRK00745 4-oxalocrotonate taut 32.5 68 0.0015 20.8 3.3 29 39-67 2-30 (62)
64 PF03668 ATP_bind_2: P-loop AT 32.4 73 0.0016 28.4 4.3 30 60-91 16-45 (284)
65 PF06560 GPI: Glucose-6-phosph 32.0 78 0.0017 26.3 4.2 37 222-259 93-136 (182)
66 TIGR01086 fucA L-fuculose phos 31.6 75 0.0016 26.8 4.2 36 37-78 121-156 (214)
67 PRK06557 L-ribulose-5-phosphat 31.5 70 0.0015 27.1 4.0 50 37-92 130-183 (221)
68 PRK06357 hypothetical protein; 31.3 1E+02 0.0023 26.1 5.0 49 37-91 130-186 (216)
69 PLN02433 uroporphyrinogen deca 30.9 1.1E+02 0.0023 28.0 5.3 46 48-93 288-337 (345)
70 PF01471 PG_binding_1: Putativ 30.0 71 0.0015 20.3 3.0 42 56-97 3-44 (57)
71 PF03460 NIR_SIR_ferr: Nitrite 29.3 90 0.002 20.8 3.6 37 56-92 24-68 (69)
72 cd00379 Ribosomal_L10_P0 Ribos 29.3 1.7E+02 0.0037 22.9 5.7 38 54-91 3-41 (155)
73 COG3384 Aromatic ring-opening 29.1 1.3E+02 0.0029 26.5 5.2 42 34-77 129-170 (268)
74 COG1402 Uncharacterized protei 28.6 2.2E+02 0.0047 24.9 6.5 44 52-95 86-132 (250)
75 KOG0256 1-aminocyclopropane-1- 27.3 1.7E+02 0.0038 27.6 5.9 55 41-95 393-460 (471)
76 PRK06754 mtnB methylthioribulo 27.0 82 0.0018 26.5 3.6 37 56-92 149-188 (208)
77 PRK01964 4-oxalocrotonate taut 27.0 90 0.002 20.5 3.2 29 39-67 2-30 (64)
78 PRK09553 tauD taurine dioxygen 27.0 1.1E+02 0.0025 26.8 4.7 52 36-96 14-65 (277)
79 PLN00052 prolyl 4-hydroxylase; 26.9 4.6E+02 0.01 23.7 8.5 15 78-92 63-77 (310)
80 PF12851 Tet_JBP: Oxygenase do 26.4 3.5E+02 0.0077 21.9 9.8 51 211-262 84-147 (171)
81 cd05796 Ribosomal_P0_like Ribo 25.8 1.8E+02 0.0039 23.4 5.3 39 53-91 2-41 (163)
82 cd05797 Ribosomal_L10 Ribosoma 25.5 2.6E+02 0.0057 22.1 6.2 39 53-91 4-43 (157)
83 cd00250 CAS_like Clavaminic ac 24.5 1.4E+02 0.0031 25.7 4.8 50 36-93 17-66 (262)
84 cd05795 Ribosomal_P0_L10e Ribo 24.3 2E+02 0.0043 23.5 5.3 39 53-91 2-41 (175)
85 PF00046 Homeobox: Homeobox do 24.1 84 0.0018 19.9 2.5 39 149-187 10-48 (57)
86 PF00466 Ribosomal_L10: Riboso 23.8 2.8E+02 0.0061 19.9 6.1 42 52-93 4-46 (100)
87 PRK00115 hemE uroporphyrinogen 23.1 1.8E+02 0.0038 26.5 5.3 45 49-93 296-344 (346)
88 PF01113 DapB_N: Dihydrodipico 22.9 1.5E+02 0.0032 22.6 4.1 44 39-91 70-114 (124)
89 PRK00099 rplJ 50S ribosomal pr 22.4 3.2E+02 0.007 22.0 6.3 40 53-92 5-45 (172)
90 PRK06208 hypothetical protein; 22.2 1.6E+02 0.0035 26.1 4.7 37 56-92 178-216 (274)
91 TIGR03581 EF_0839 conserved hy 22.1 1.4E+02 0.003 25.6 3.9 38 54-92 162-200 (236)
92 PF01198 Ribosomal_L31e: Ribos 21.5 66 0.0014 23.0 1.7 17 261-277 52-68 (83)
93 PF10055 DUF2292: Uncharacteri 21.0 75 0.0016 19.1 1.6 13 218-230 13-25 (38)
94 PRK04019 rplP0 acidic ribosoma 21.0 2.7E+02 0.0058 25.4 5.9 40 52-91 6-46 (330)
95 COG0289 DapB Dihydrodipicolina 20.9 2.7E+02 0.0059 24.5 5.7 44 40-92 73-117 (266)
96 COG0244 RplJ Ribosomal protein 20.9 3.6E+02 0.0077 22.1 6.2 41 52-92 6-47 (175)
97 PRK04516 minC septum formation 20.7 1.9E+02 0.0042 25.0 4.7 42 37-82 46-88 (235)
98 PRK15331 chaperone protein Sic 20.7 1.1E+02 0.0024 24.9 3.0 43 53-96 8-50 (165)
99 PF12791 RsgI_N: Anti-sigma fa 20.6 50 0.0011 21.3 0.8 21 239-262 14-34 (56)
100 COG3113 Predicted NTP binding 20.3 2.3E+02 0.005 20.9 4.3 56 37-99 40-95 (99)
101 PRK10628 LigB family dioxygena 20.3 2E+02 0.0043 25.1 4.7 40 34-74 107-146 (246)
102 PF08823 PG_binding_2: Putativ 20.1 1.6E+02 0.0035 20.4 3.4 34 56-89 16-49 (74)
103 KOG2833 Mevalonate pyrophospha 20.1 5.8E+02 0.013 23.3 7.5 119 86-206 130-274 (395)
No 1
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.6e-71 Score=507.56 Aligned_cols=275 Identities=36% Similarity=0.634 Sum_probs=243.3
Q ss_pred CcchhhhhhcCCCCCCCCCCcCCCCCCCcCC---CCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCC
Q 023033 1 MFCVKGLSESGRLTSVPSKYFFEKDLNDDCI---NSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHG 77 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~---~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhg 77 (288)
|..|+.|+++| ++++|++|++|+++++... .....+||+|||+.+.+++.+++++++++|.+||++||||||+|||
T Consensus 14 ~~~~~~l~~~~-~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG 92 (361)
T PLN02758 14 IDDVQELRKSK-PTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHG 92 (361)
T ss_pred cccHHHHHhcC-CCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCC
Confidence 45689999988 9999999999998887532 1134689999999998777667778899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHH
Q 023033 78 VPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSE 152 (288)
Q Consensus 78 i~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~ 152 (288)
|+.++++++++++++||+||.|+|+++... +...+||+...........||+|.+.++..+ .+.||+.+++||+
T Consensus 93 i~~~l~~~~~~~~~~FF~LP~eeK~k~~~~-~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~ 171 (361)
T PLN02758 93 IELELLEEIEKVAREFFMLPLEEKQKYPMA-PGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSE 171 (361)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhccc-CCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHHH
Confidence 999999999999999999999999998643 3356899765433345567999999887544 3569998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCC--
Q 023033 153 TIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQND-- 230 (288)
Q Consensus 153 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~-- 230 (288)
.+++|+++|.+|+.+|+++|+++||+++++|.+.+ . ...+.||++|||+|+.++..+|+++|||+|+||||+|++
T Consensus 172 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~ 248 (361)
T PLN02758 172 TLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMF--G-EAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGS 248 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHh--c-CccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCC
Confidence 99999999999999999999999999999999988 6 667899999999999988899999999999999999974
Q ss_pred CCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 231 HVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 231 ~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
++||||+++|+|++|+|.||++|||+||+||+ |||| |||++|||+.++++
T Consensus 249 v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~-~SNG~~kS~~HRVv~~~~~ 299 (361)
T PLN02758 249 CVGLQILKDNTWVPVHPVPNALVINIGDTLEV-LTNGKYKSVEHRAVTNKEK 299 (361)
T ss_pred CCCeeeeeCCEEEeCCCCCCeEEEEccchhhh-hcCCeeecccceeecCCCC
Confidence 88999999999999999999999999999999 9999 99999999987543
No 2
>PLN02216 protein SRG1
Probab=100.00 E-value=8.3e-71 Score=502.22 Aligned_cols=274 Identities=31% Similarity=0.595 Sum_probs=237.7
Q ss_pred cchhhhhhcCCCCCCCCCCcCCCCCCCcCC--CCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCC
Q 023033 2 FCVKGLSESGRLTSVPSKYFFEKDLNDDCI--NSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVP 79 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~--~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~ 79 (288)
.+|+.|++++.+++||+.|++|+++++... .....+||+|||+.+.++++ +.+++++|.+||++||||||+||||+
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~--~~~~~~~l~~Ac~~~GFF~v~nHGI~ 92 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA--MDSEVEKLDFACKEWGFFQLVNHGID 92 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc--HHHHHHHHHHHHHHCcEEEEECCCCC
Confidence 358899887339999999999999887532 11235799999999876543 44689999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHHHH
Q 023033 80 NTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSETI 154 (288)
Q Consensus 80 ~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~~~ 154 (288)
.++++++++.+++||+||.|+|+++... ...++||+........+..||+|.+.++..| .+.||+.++.||+.+
T Consensus 93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~ 171 (357)
T PLN02216 93 SSFLDKVKSEIQDFFNLPMEEKKKLWQR-PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTL 171 (357)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhhcC-CCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHH
Confidence 9999999999999999999999998543 3457889765433345667999999876433 456999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEc-CCCCC
Q 023033 155 QEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQ-NDHVG 233 (288)
Q Consensus 155 ~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q-~~~~G 233 (288)
++|+++|.+|+.+|+++||++||+++++|.+.+ .....+.||++|||||+.++..+|+++|||+|+||||+| ++++|
T Consensus 172 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~G 249 (357)
T PLN02216 172 ETYSAEVKSIAKILFAKMASALEIKPEEMEKLF--DDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEG 249 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--ccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCc
Confidence 999999999999999999999999999999988 523457899999999999888999999999999999999 57999
Q ss_pred eEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 234 LHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 234 Lqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
|||+.+|+|++|+|+||++|||+||+||+ |||| |||++|||+.++.+
T Consensus 250 LQV~~~g~Wi~V~p~pgalvVNiGD~L~~-~TNG~~kS~~HRVv~~~~~ 297 (357)
T PLN02216 250 LQIKKDGKWVSVKPLPNALVVNVGDILEI-ITNGTYRSIEHRGVVNSEK 297 (357)
T ss_pred eeEEECCEEEECCCCCCeEEEEcchhhHh-hcCCeeeccCceeecCCCC
Confidence 99999999999999999999999999999 9999 99999999877543
No 3
>PLN02947 oxidoreductase
Probab=100.00 E-value=2.8e-70 Score=500.45 Aligned_cols=272 Identities=39% Similarity=0.755 Sum_probs=237.2
Q ss_pred cchhhhhhcCCCCCCCCCCcCCCCCCCcCCC------CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEe
Q 023033 2 FCVKGLSESGRLTSVPSKYFFEKDLNDDCIN------SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVIN 75 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~------~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n 75 (288)
.+||.|+++| +++||++|++|+++++.... ....+||+|||+.+.+ .+|.+++++|.+||++||||||+|
T Consensus 26 ~~v~~l~~~~-~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~---~~~~~~~~~l~~Ac~~~GFF~v~n 101 (374)
T PLN02947 26 KGVKHLCDSG-ITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG---SNRPHVLATLAAACREYGFFQVVN 101 (374)
T ss_pred cCHHHHHhcC-CCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC---ccHHHHHHHHHHHHHHCcEEEEEc
Confidence 4799999998 99999999999998875321 1345799999999863 246788999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC----CCCCCCCCcchH
Q 023033 76 HGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP----QFNAPQNPLGFS 151 (288)
Q Consensus 76 hgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~----~~~wP~~~~~f~ 151 (288)
||||.++++++++.+++||+||.|+|+++...+.....||+..+.....+..+|+|.+.+...| .+.||+.+++||
T Consensus 102 HGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr 181 (374)
T PLN02947 102 HGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLR 181 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHH
Confidence 9999999999999999999999999999864443445678755433345567899998765444 356999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEc
Q 023033 152 ETIQEYCKRVRELANELLKGIMESLGLE---ESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQ 228 (288)
Q Consensus 152 ~~~~~y~~~~~~la~~ll~~la~~Lgl~---~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q 228 (288)
+.+++|+++|.+|+.+|+++|+++||++ .++|.+.+ . ...+.+|++|||||++++..+|+++|||+|+||||+|
T Consensus 182 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~--~-~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q 258 (374)
T PLN02947 182 KVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEF--E-AGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQ 258 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHh--c-CcceeeeeecCCCCCCcccccCCCCccCCCceEEEEe
Confidence 9999999999999999999999999996 45777776 5 5668899999999999988999999999999999999
Q ss_pred CCCCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 229 NDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 229 ~~~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
++++||||+++|+|++|+|.||++|||+||+||+ |||| |||++|||+.++.+
T Consensus 259 d~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~-~SNG~~kS~~HRVv~~~~~ 311 (374)
T PLN02947 259 DEVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEI-FSNGRYKSVLHRVRVNSTK 311 (374)
T ss_pred cCCCCeeEeECCEEEeCCCCCCeEEEEeCceeee-eeCCEEeccccccccCCCC
Confidence 9999999999999999999999999999999999 9999 99999999987654
No 4
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.9e-69 Score=492.92 Aligned_cols=272 Identities=36% Similarity=0.692 Sum_probs=235.6
Q ss_pred cchhhhhhcCCCCCCCCCCcCCCCCCCcCCC---CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCC
Q 023033 2 FCVKGLSESGRLTSVPSKYFFEKDLNDDCIN---SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGV 78 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~---~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi 78 (288)
-+|++|+++| +++||+.|++|+++++.... .+..+||+|||+.+.+ ++.|.+++++|.+||++||||||+||||
T Consensus 14 ~~~~~l~~~~-~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~--~~~r~~~~~~l~~Ac~~~GFf~v~nHGI 90 (357)
T PLN02904 14 TSAMTLTNSG-VPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHD--PLLRSCVIHEIEMACKGFGFFQVINHGI 90 (357)
T ss_pred cchHHHHhcC-CCCCCHHhCCCchhcccccccccccCCCCCEEECcccCC--chhHHHHHHHHHHHHHHCceEEEEeCCC
Confidence 3799999998 99999999999999886421 1346899999998863 4567789999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC----CCCCCCCCcchHHHH
Q 023033 79 PNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP----QFNAPQNPLGFSETI 154 (288)
Q Consensus 79 ~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~----~~~wP~~~~~f~~~~ 154 (288)
+.++++++++++++||+||.|+|+++......++.||+...........+|+|.+.....+ .+.||+.+|+||+.+
T Consensus 91 ~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~ 170 (357)
T PLN02904 91 PSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKV 170 (357)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHH
Confidence 9999999999999999999999999865443445567654322234455888876554322 366999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCe
Q 023033 155 QEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGL 234 (288)
Q Consensus 155 ~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GL 234 (288)
++|+++|.+|+.+|+++||++||+++++|.+.+ . ...+.||++|||||+.++..+|+++|||+|+||||+|+ .+||
T Consensus 171 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd-~~GL 246 (357)
T PLN02904 171 GKYAEATHVLHKQLIEAISESLGLEKNYLQEEI--E-EGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS-SQGL 246 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--c-CcccEEEeeecCCCCCcccccCCcCccCCCceEEEecC-CCee
Confidence 999999999999999999999999999999988 6 56678999999999988889999999999999999997 4899
Q ss_pred EEee-CCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 235 HVRH-DGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 235 qv~~-~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
||++ +|+|++|+|.||++|||+||+||+ |||| ||||+|||+.++..
T Consensus 247 QV~~~~g~Wi~V~p~pgalVVNiGD~Le~-~TNG~~kSt~HRVv~~~~~ 294 (357)
T PLN02904 247 QIMDCNKNWVCVPYIEGALIVQLGDQVEV-MSNGIYKSVVHRVTVNKDY 294 (357)
T ss_pred eEEeCCCCEEECCCCCCeEEEEccHHHHH-HhCCeeeccCCcccCCCCC
Confidence 9998 899999999999999999999999 9999 99999999987544
No 5
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=1.8e-69 Score=494.66 Aligned_cols=277 Identities=30% Similarity=0.533 Sum_probs=240.4
Q ss_pred chhhhhhcCCCCCCCCCCcCCCCCCCcCCC-------CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEe
Q 023033 3 CVKGLSESGRLTSVPSKYFFEKDLNDDCIN-------SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVIN 75 (288)
Q Consensus 3 ~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~-------~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n 75 (288)
.|+.|++++ +.+||+.|++|+++++.... .....||+|||+.+.++++++|..++++|.+||+++|||||+|
T Consensus 7 ~~~~l~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n 85 (360)
T PLN03178 7 RVEALASSG-VSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVG 85 (360)
T ss_pred hHHHHHhcC-CCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEc
Confidence 488999988 89999999999988875421 1345799999999998887788899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCC-CCCceeccccccccCCccccccccccccccC-----CCCCCCCCcc
Q 023033 76 HGVPNTLRDEMIRASESFFDLSDEQKREYAGKK-LFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLG 149 (288)
Q Consensus 76 hgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~-~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~ 149 (288)
|||+.++++++++.+++||+||.|+|+++.... ...++||+........+..||+|.+.....| .+.||+.+++
T Consensus 86 HGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~ 165 (360)
T PLN03178 86 HGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPD 165 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCchH
Confidence 999999999999999999999999999996543 2356899654332334556899887653322 3569998899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC
Q 023033 150 FSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN 229 (288)
Q Consensus 150 f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~ 229 (288)
||+.+++|+++|.+++.+|+++||++||+++++|.+.+.......+.||++|||+|+.++..+|+++|||+|+||||+|+
T Consensus 166 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd 245 (360)
T PLN03178 166 YVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHN 245 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeC
Confidence 99999999999999999999999999999999999988321133568999999999988889999999999999999999
Q ss_pred CCCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 230 DHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 230 ~~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
+++||||+++|+|++|+|.||++|||+||+||+ |||| ||||+|||+.++..
T Consensus 246 ~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~~-~TNG~~kSt~HRVv~~~~~ 297 (360)
T PLN03178 246 MVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLEI-LSNGRYKSILHRGLVNKEK 297 (360)
T ss_pred CCCceeEeECCEEEEcCCCCCeEEEEccHHHHH-HhCCccccccceeecCCCC
Confidence 999999999999999999999999999999999 9999 99999999876543
No 6
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.5e-69 Score=489.98 Aligned_cols=269 Identities=37% Similarity=0.671 Sum_probs=230.8
Q ss_pred hhhhhhcCCCCCCCCCCcCCCCCCCcCCC--CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChH
Q 023033 4 VKGLSESGRLTSVPSKYFFEKDLNDDCIN--SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNT 81 (288)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~p~~~~~~~~~--~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~ 81 (288)
||+|+ +| ++.+|+.|++|.++++.+.. .+..+||+|||+.+.+. ++.+++++|.+||++||||||+||||+.+
T Consensus 8 ~~~~~-~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~---~~~~~~~~l~~A~~~~GFf~v~nHGI~~~ 82 (348)
T PLN02912 8 VSDIA-SV-VDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGP---NRADIINQFAHACSSYGFFQIKNHGVPEE 82 (348)
T ss_pred HHHHh-cC-CCCCCHHhcCCchhccccccccccCCCCCeEECcccCCc---CHHHHHHHHHHHHHHCCEEEEEeCCCCHH
Confidence 66776 67 89999999999988875321 13467999999998642 35678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC----CCCCCCCCcchHHHHHHH
Q 023033 82 LRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP----QFNAPQNPLGFSETIQEY 157 (288)
Q Consensus 82 ~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~----~~~wP~~~~~f~~~~~~y 157 (288)
+++++++++++||+||.|+|+++....+....+|+..+.....+..+|+|.+.+...+ .|.||+.+++||+.+++|
T Consensus 83 l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y 162 (348)
T PLN02912 83 TIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEY 162 (348)
T ss_pred HHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHHH
Confidence 9999999999999999999999644333333333333322234567899998765433 367999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEe
Q 023033 158 CKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVR 237 (288)
Q Consensus 158 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~ 237 (288)
+++|.+|+.+|+++||++||+++++|.+.+ . ...+.||++|||||+.++..+|+++|||+|+||||+||+++||||+
T Consensus 163 ~~~~~~l~~~il~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~ 239 (348)
T PLN02912 163 ATSVRALVLTLLEAISESLGLEKDRVSNTL--G-KHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVF 239 (348)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--c-CccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCCCceEEE
Confidence 999999999999999999999999999988 5 5678899999999998888999999999999999999999999999
Q ss_pred eCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 238 HDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 238 ~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
.+|+|++|+|.||++|||+||+||+ |||| ||||+|||++++..
T Consensus 240 ~~g~Wi~V~p~pgalvVNiGD~L~~-~TNG~~kSt~HRVv~~~~~ 283 (348)
T PLN02912 240 KDGKWIAVNPIPNTFIVNLGDQMQV-ISNDKYKSVLHRAVVNTDK 283 (348)
T ss_pred ECCcEEECCCcCCeEEEEcCHHHHH-HhCCEEEcccccccCCCCC
Confidence 9999999999999999999999999 9999 99999999877544
No 7
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=4.1e-69 Score=492.29 Aligned_cols=277 Identities=39% Similarity=0.634 Sum_probs=240.6
Q ss_pred cchhhhhhcCCCCCCCCCCcCCCCCCCcCC----CCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCC
Q 023033 2 FCVKGLSESGRLTSVPSKYFFEKDLNDDCI----NSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHG 77 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~----~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhg 77 (288)
-.|+.|++++ ++++|++|++|+++++... ..+.++||+|||+.+.++++++|.+++++|.+||++||||||+|||
T Consensus 13 ~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHG 91 (362)
T PLN02393 13 VRVQSLSESG-LPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHG 91 (362)
T ss_pred chHHHHHhcC-CCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCC
Confidence 3588898888 9999999999999887541 1245689999999998877778889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHH
Q 023033 78 VPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSE 152 (288)
Q Consensus 78 i~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~ 152 (288)
|+.++++++++.+++||+||.|+|+++... +..++||+...........||+|.+.++..+ .|.||+.+++|++
T Consensus 92 I~~~li~~~~~~~~~FF~LP~eeK~~~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~ 170 (362)
T PLN02393 92 VRPELMDRAREAWREFFHLPLEVKQRYANS-PATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRE 170 (362)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHhhhcc-cCcccccccccccccccccCchhheeeeecCccccchhhCcccchHHHH
Confidence 999999999999999999999999998643 3457899644323334567999988765322 4679998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEc-CCC
Q 023033 153 TIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQ-NDH 231 (288)
Q Consensus 153 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q-~~~ 231 (288)
.+++|+++|.+++.+|+++||++||+++++|.+.+.....+.+.||++|||+|+.++..+|+++|||+|+||||+| +++
T Consensus 171 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~~~v 250 (362)
T PLN02393 171 LIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPDDNV 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeCCCC
Confidence 9999999999999999999999999999999998732211337899999999998888999999999999999998 578
Q ss_pred CCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 232 VGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 232 ~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
+||||+.+|+|++|+|.||++|||+||+||+ |||| ||||+|||+.++.+
T Consensus 251 ~GLQV~~~g~W~~V~p~pgalVVNiGD~l~~-~Tng~~kSt~HRVv~~~~~ 300 (362)
T PLN02393 251 AGLQVRRDDAWITVKPVPDAFIVNIGDQIQV-LSNAIYKSVEHRVIVNSAK 300 (362)
T ss_pred CcceeeECCEEEECCCCCCeEEEEcchhhHh-hcCCeeeccceecccCCCC
Confidence 9999999999999999999999999999999 9999 99999999987543
No 8
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.1e-68 Score=483.74 Aligned_cols=271 Identities=30% Similarity=0.554 Sum_probs=232.3
Q ss_pred hhhhhhcCCCCCCCCCCcCCCCCCCc----CCCCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCC
Q 023033 4 VKGLSESGRLTSVPSKYFFEKDLNDD----CINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVP 79 (288)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~p~~~~~~----~~~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~ 79 (288)
|+++++++ ..+|+.|++|++.++. ....+.++||+|||+.+.+++++.+ +.+++|.+||+++|||||+||||+
T Consensus 9 ~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~-~~~~~l~~A~~~~GFf~l~nHGI~ 85 (348)
T PLN00417 9 VQEVVAAG--EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGR-EELSKLHSALSTWGVVQVMNHGIT 85 (348)
T ss_pred HHHHHhCC--CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHH-HHHHHHHHHHHHCCEEEEEcCCCC
Confidence 78888877 5899999999988532 1112456899999999987666444 456899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHHHH
Q 023033 80 NTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSETI 154 (288)
Q Consensus 80 ~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~~~ 154 (288)
.++++++++.+++||+||.|+|+++.... ..++||+........+..+|+|.+.+...+ .|.||+.+++||+.+
T Consensus 86 ~~l~~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~ 164 (348)
T PLN00417 86 EAFLDKIYKLTKQFFALPTEEKQKCAREI-GSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETL 164 (348)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcCC-CCccccccccccccCCCcCccceeecccCCcccccccccccccHHHHHHH
Confidence 99999999999999999999999996543 346899765322334567899987665433 256999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCC
Q 023033 155 QEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVG 233 (288)
Q Consensus 155 ~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~G 233 (288)
++|+++|.+|+.+|+++||++||+++++|.+.+ .....+.||++|||||+.++..+|+++|||+|+||||+|+ +++|
T Consensus 165 ~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~--~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~G 242 (348)
T PLN00417 165 HEYTMKQRLVIEKFFKAMARSLELEENCFLEMY--GENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEG 242 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--ccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCc
Confidence 999999999999999999999999999999888 4234467999999999988888999999999999999996 6999
Q ss_pred eEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 234 LHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 234 Lqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
|||+.+|+|++|+|.||++|||+||+||+ |||| |+||+|||+.++..
T Consensus 243 LQV~~~g~Wi~V~p~pg~lVVNiGD~Le~-~Tng~~kSt~HRVv~~~~~ 290 (348)
T PLN00417 243 LQFLKDGKWYKAPIVPDTILINVGDQMEI-MSNGIYKSPVHRVVTNREK 290 (348)
T ss_pred eeEeECCeEEECCCCCCcEEEEcChHHHH-HhCCeecccceEEecCCCC
Confidence 99999999999999999999999999999 9999 99999999987543
No 9
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=2.4e-68 Score=487.07 Aligned_cols=262 Identities=30% Similarity=0.539 Sum_probs=231.6
Q ss_pred CCCCCCCcCCCCCCCcCCCCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHH
Q 023033 14 TSVPSKYFFEKDLNDDCINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESF 93 (288)
Q Consensus 14 ~~~p~~~~~p~~~~~~~~~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~f 93 (288)
.+||+.|++|++++|..+ ....+||+|||+.+.++++++|.+++++|.+||++||||||+||||+.++++++++.+++|
T Consensus 18 ~~vp~~~~~~~~~~p~~~-~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~F 96 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAA-VPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAF 96 (361)
T ss_pred CCCCHHhcCCccccCCCC-CcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 579999999998887532 1346899999999988787788899999999999999999999999999999999999999
Q ss_pred hcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC------------CCCCCCCCcchHHHHHHHHHHH
Q 023033 94 FDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP------------QFNAPQNPLGFSETIQEYCKRV 161 (288)
Q Consensus 94 F~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~------------~~~wP~~~~~f~~~~~~y~~~~ 161 (288)
|+||.|+|+++... +...+||+........+..||+|.|.++..+ .+.||+..++|++.+++|+++|
T Consensus 97 F~LP~eeK~k~~~~-~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~ 175 (361)
T PLN02276 97 FKLPLSEKQRAQRK-PGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAM 175 (361)
T ss_pred HcCCHHHHHhhccC-CCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHH
Confidence 99999999998643 4456899765433334557999999886422 1346766678999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEeeCCe
Q 023033 162 RELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGK 241 (288)
Q Consensus 162 ~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~~g~ 241 (288)
.+|+.+||++||++||+++++|.+.+ . .+.+.||++|||+|+.++..+|+++|||+|+||||+|++++||||+.+|+
T Consensus 176 ~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~ 252 (361)
T PLN02276 176 KTLSLKIMELLGISLGVDRGYYRKFF--E-DGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNK 252 (361)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHh--c-CccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCE
Confidence 99999999999999999999999988 6 66789999999999988889999999999999999999999999999999
Q ss_pred eEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 242 WIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 242 W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
|++|+|.||++|||+||+||+ |||| |+||+|||+.++.+
T Consensus 253 Wi~V~p~pgalVVNiGD~L~~-~TNG~~kSt~HRVv~~~~~ 292 (361)
T PLN02276 253 WRSVRPRPGALVVNIGDTFMA-LSNGRYKSCLHRAVVNSER 292 (361)
T ss_pred EEEcCCCCCeEEEEcHHHHHH-HhCCccccccceeecCCCC
Confidence 999999999999999999999 9999 99999999987543
No 10
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=8e-68 Score=482.05 Aligned_cols=268 Identities=31% Similarity=0.528 Sum_probs=228.9
Q ss_pred hhhcCCCCCCCCCCcCCCCCCCcCCCC-CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHH
Q 023033 7 LSESGRLTSVPSKYFFEKDLNDDCINS-EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDE 85 (288)
Q Consensus 7 ~~~~~~~~~~p~~~~~p~~~~~~~~~~-~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~ 85 (288)
+.+-++++.+|+.|++|+.+++..... ...+||+|||+.+..++ .+|.+++++|.+||++||||||+||||+.+++++
T Consensus 6 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~ 84 (358)
T PLN02515 6 LTALAGESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVG-GRRGEICRKIVEACEDWGIFQVVDHGVDANLVAD 84 (358)
T ss_pred cccccCCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCc-hHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHH
Confidence 334334789999999999888754221 33579999999987644 4678899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHHHHHHHHHH
Q 023033 86 MIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSETIQEYCKR 160 (288)
Q Consensus 86 ~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~~~~~y~~~ 160 (288)
+++.+++||+||.|+|+++..... ..+||............||+|.+.+...+ .|.||+.+++||+.+++|+++
T Consensus 85 ~~~~~~~FF~LP~eeK~k~~~~~~-~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~ 163 (358)
T PLN02515 85 MTRLARDFFALPAEEKLRFDMSGG-KKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEK 163 (358)
T ss_pred HHHHHHHHhcCCHHHHhhhCcCCC-CccCcccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHH
Confidence 999999999999999999855433 34688532222234567999998764322 367999889999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEee-C
Q 023033 161 VRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRH-D 239 (288)
Q Consensus 161 ~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~-~ 239 (288)
|.+|+.+|+++|+++||+++++|.+.+ . ...+.+|++|||+|+.++..+|+++|||+|+||||+||+++||||++ +
T Consensus 164 ~~~L~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~ 240 (358)
T PLN02515 164 LMGLACKLLEVLSEAMGLEKEALTKAC--V-DMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDG 240 (358)
T ss_pred HHHHHHHHHHHHHHhcCCChhhHHHhh--c-CccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECC
Confidence 999999999999999999999999988 5 55678999999999988889999999999999999999999999988 3
Q ss_pred C-eeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCc
Q 023033 240 G-KWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNV 280 (288)
Q Consensus 240 g-~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~ 280 (288)
| +|++|+|.||++|||+||+||+ |||| ||||+|||+.++.
T Consensus 241 ~~~Wi~Vpp~pgalVVNiGD~L~~-~TNG~~kSt~HRVv~~~~ 282 (358)
T PLN02515 241 GKTWITVQPVEGAFVVNLGDHGHY-LSNGRFKNADHQAVVNSN 282 (358)
T ss_pred CCeEEECCCCCCeEEEEccHHHHH-HhCCeeeeecceEECCCC
Confidence 3 7999999999999999999999 9999 9999999987754
No 11
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9e-68 Score=479.76 Aligned_cols=267 Identities=41% Similarity=0.745 Sum_probs=228.9
Q ss_pred hhhhhcC-CCCCCCCCCcCCCCCCCcCCC-CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHH
Q 023033 5 KGLSESG-RLTSVPSKYFFEKDLNDDCIN-SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTL 82 (288)
Q Consensus 5 ~~~~~~~-~~~~~p~~~~~p~~~~~~~~~-~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~ 82 (288)
++|++.| +..++|+.|++|++++|.... .+..+||+|||+.. ++++++++|.+||++||||||+||||+.++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l 76 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP------DRAQVVQQIGDACRRYGFFQVINHGVSAEL 76 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHH
Confidence 4588888 349999999999988875322 24568999999863 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC----CCCCCCCCcchHHHHHHHH
Q 023033 83 RDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP----QFNAPQNPLGFSETIQEYC 158 (288)
Q Consensus 83 ~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~----~~~wP~~~~~f~~~~~~y~ 158 (288)
++++++.+++||+||.|+|+++....+....+++..+....+...+|+|.+.+...| .|.||+.+++|++.+++|+
T Consensus 77 ~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~ 156 (337)
T PLN02639 77 VEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYC 156 (337)
T ss_pred HHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHH
Confidence 999999999999999999999855433323333333322234556899988775433 3569998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCCeEEe
Q 023033 159 KRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVGLHVR 237 (288)
Q Consensus 159 ~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~ 237 (288)
++|.+|+.+|+++||++||+++++|.+.+ . ...+.||++|||+++.++..+|+++|||+|+||||+|+ +++||||+
T Consensus 157 ~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~ 233 (337)
T PLN02639 157 REVRELGFRLQEAISESLGLEKDYIKNVL--G-EQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVL 233 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHh--C-CCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEee
Confidence 99999999999999999999999999988 6 56678999999999988888999999999999999998 49999999
Q ss_pred eCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 238 HDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 238 ~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
++|+|++|+|.||++|||+||+||+ |||| ||||+|||+.++..
T Consensus 234 ~~g~Wi~V~p~pg~lVVNiGD~L~~-~TNG~~kSt~HRVv~~~~~ 277 (337)
T PLN02639 234 KDGKWVAVNPHPGAFVINIGDQLQA-LSNGRYKSVWHRAVVNTDK 277 (337)
T ss_pred cCCeEEeccCCCCeEEEechhHHHH-HhCCeeeccCcccccCCCC
Confidence 9999999999999999999999999 9999 99999999977543
No 12
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.4e-67 Score=480.38 Aligned_cols=257 Identities=33% Similarity=0.582 Sum_probs=222.0
Q ss_pred CCCCCCCCcCCCCCC--CcCC---CCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHH
Q 023033 13 LTSVPSKYFFEKDLN--DDCI---NSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMI 87 (288)
Q Consensus 13 ~~~~p~~~~~p~~~~--~~~~---~~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~ 87 (288)
+.+||.+|++|++++ +... .....+||||||+. + .++++|.+||++||||||+||||+.+++++++
T Consensus 27 ~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~-----~----~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~ 97 (358)
T PLN02254 27 LQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD-----P----NALTLIGHACETWGVFQVTNHGIPLSLLDDIE 97 (358)
T ss_pred hccCChhhcCChhhccCccccccccCcCCCCCeEeCCC-----H----HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHH
Confidence 568999999999888 3211 11345799999974 2 46899999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHhhhcCCCCCceeccccccccCCccccccccccccccC----CCCCCCCCcchHHHHHHHHHHHHH
Q 023033 88 RASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP----QFNAPQNPLGFSETIQEYCKRVRE 163 (288)
Q Consensus 88 ~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~----~~~wP~~~~~f~~~~~~y~~~~~~ 163 (288)
+.+++||+||.|+|+++... ...+.||+...........+|+|.|.+...+ .+.||+.+++||+.+++|+++|.+
T Consensus 98 ~~~~~FF~LP~EeK~k~~~~-~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~ 176 (358)
T PLN02254 98 SQTRRLFSLPAQRKLKAARS-PDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKK 176 (358)
T ss_pred HHHHHHHcCCHHHHHhhccC-CCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999998543 4457899865543344567999999875433 356999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHhcc---ccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEeeCC
Q 023033 164 LANELLKGIMESLGLEESYIQKAMD---LETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDG 240 (288)
Q Consensus 164 la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~~g 240 (288)
|+.+|+++|+++||+++++|.+.+. .. .+.+.||++|||||+.++..+|+++|||+|+||||+||+++||||+++|
T Consensus 177 L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~-~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~~~ 255 (358)
T PLN02254 177 LAERLMWLMLGSLGITEEDIKWAGPKSGSQ-GAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQVFREG 255 (358)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhhccccc-CcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCceEECCC
Confidence 9999999999999999999877651 12 4567899999999999888999999999999999999999999999854
Q ss_pred -eeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 241 -KWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 241 -~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
+|++|+|.||++|||+||+||+ |||| |||++|||+.++.+
T Consensus 256 ~~Wi~V~p~pgalVVNiGD~lq~-~SNg~~kS~~HRVv~~~~~ 297 (358)
T PLN02254 256 VGWVTVPPVPGSLVVNVGDLLHI-LSNGRFPSVLHRAVVNKTR 297 (358)
T ss_pred CEEEEcccCCCCEEEEhHHHHHH-HhCCeeccccceeecCCCC
Confidence 8999999999999999999999 9999 99999999987544
No 13
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=6.5e-67 Score=450.07 Aligned_cols=241 Identities=30% Similarity=0.460 Sum_probs=225.9
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCcee
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR 114 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~g 114 (288)
+..||+|||+.+..+++.+|..++++|++||+++|||||+||||+.++++++++++++||+||.|+|.++.+.....++|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 45899999999998888899999999999999999999999999999999999999999999999999998877778899
Q ss_pred ccccccccCCcccccccccccccc---------------CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 023033 115 WGTSFNVNVDKTLFWRDYLKIHVH---------------PQFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLE 179 (288)
Q Consensus 115 y~~~~~~~~~~~~d~~e~~~~~~~---------------~~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~ 179 (288)
|.........+..||+|.+.++.+ -+|.|| ..|+||+.+..|+++|.+++.+||++||++|+|+
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~ 161 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLP 161 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 987766667778899999998752 135699 7889999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEee-CCeeEeecCCCCcEEEEech
Q 023033 180 ESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRH-DGKWIPVNPPPGSFVVNIGD 258 (288)
Q Consensus 180 ~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~-~g~W~~V~~~~~~~vVn~Gd 258 (288)
+++|++.+ + ++.+.||++|||+.+..++..+.++|||+|+||||+||.++||||+. .|+|++|+|+||++|||+||
T Consensus 162 ~d~Fd~~~--~-d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGd 238 (322)
T COG3491 162 EDFFDKRT--S-DPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVNIGD 238 (322)
T ss_pred hhhhhhcc--C-CchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCCCCCeEEEeHHH
Confidence 99999997 7 89999999999999988888899999999999999999999999999 69999999999999999999
Q ss_pred hhhHHhhcC-CcCCCceEEeCCc
Q 023033 259 HMEVILSNH-FYLYLHSIYSLNV 280 (288)
Q Consensus 259 ~l~~~~TnG-~~s~~HRV~~~~~ 280 (288)
|||+ |||| ||||+|||+.|++
T Consensus 239 mLe~-~Tng~lrST~HRV~~~~~ 260 (322)
T COG3491 239 MLER-WTNGRLRSTVHRVRNPPG 260 (322)
T ss_pred HHHH-HhCCeeccccceeecCCC
Confidence 9999 9999 9999999999999
No 14
>PLN02704 flavonol synthase
Probab=100.00 E-value=9.2e-67 Score=472.79 Aligned_cols=273 Identities=30% Similarity=0.528 Sum_probs=231.5
Q ss_pred cchhhhhhc-CCCCCCCCCCcCCCCCCCcCCC--CCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCC
Q 023033 2 FCVKGLSES-GRLTSVPSKYFFEKDLNDDCIN--SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGV 78 (288)
Q Consensus 2 ~~~~~~~~~-~~~~~~p~~~~~p~~~~~~~~~--~~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi 78 (288)
-+|+.++++ +++.+||+.|++|+.++|.... .+..+||+|||+.. ++.+++++|.+||+++|||||+||||
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI 77 (335)
T PLN02704 4 ERVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP------DEEKLTRLIAEASKEWGMFQIVNHGI 77 (335)
T ss_pred hhHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc------cHHHHHHHHHHHHHHcCEEEEEcCCC
Confidence 457888775 3478999999999999886521 14567999999964 23478899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHhhhcCC-CCCceeccccccccCCccccccccccccccC-----CCCCCCCCcchHH
Q 023033 79 PNTLRDEMIRASESFFDLSDEQKREYAGKK-LFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSE 152 (288)
Q Consensus 79 ~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~-~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~ 152 (288)
+.++++++++.+++||+||.|+|+++.... ...++||+........+..+|+|.+.....+ .|.||+.+++||+
T Consensus 78 ~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~ 157 (335)
T PLN02704 78 PSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYRE 157 (335)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhHH
Confidence 999999999999999999999999986543 3346899755433335566788876443222 2469998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCC
Q 023033 153 TIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHV 232 (288)
Q Consensus 153 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~ 232 (288)
.+++|+++|.+|+.+|+++|+++||+++++|.+.+... ...+.||++|||||+.++..+|+++|||+|+||||+|++++
T Consensus 158 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~-~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~ 236 (335)
T PLN02704 158 VNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGE-ELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQ 236 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC-chhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCCCC
Confidence 99999999999999999999999999999999887211 23468999999999988889999999999999999999999
Q ss_pred CeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcce
Q 023033 233 GLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVCV 282 (288)
Q Consensus 233 GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~~ 282 (288)
||||+.+|+|++|+|.||++|||+||+||+ |||| ||||+|||+.++...
T Consensus 237 GLQV~~~g~Wi~V~p~pg~lvVNvGD~L~~-~TNg~~kSt~HRVv~~~~~~ 286 (335)
T PLN02704 237 GLQVFRDDHWFDVKYIPNALVIHIGDQIEI-LSNGKYKSVLHRTTVNKEKT 286 (335)
T ss_pred ceeEeECCEEEeCCCCCCeEEEEechHHHH-HhCCeeecccceeecCCCCC
Confidence 999999999999999999999999999999 9999 999999999875443
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.1e-66 Score=470.31 Aligned_cols=258 Identities=35% Similarity=0.649 Sum_probs=224.1
Q ss_pred CCCCCCCcCCCCCCCcCCCC-CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHH
Q 023033 14 TSVPSKYFFEKDLNDDCINS-EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASES 92 (288)
Q Consensus 14 ~~~p~~~~~p~~~~~~~~~~-~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~ 92 (288)
.++|..|++|+.+++..... ...+||+|||+.+. ..+|++++++|.+||+++|||||+||||+.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~---~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~ 78 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVST---SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKE 78 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCC---cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 47999999999888753211 24589999999853 235778899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHhhhcCCCCCceeccccccccCCcccccccccccccc-----C-------------CCCCCCCCcchHHHH
Q 023033 93 FFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVH-----P-------------QFNAPQNPLGFSETI 154 (288)
Q Consensus 93 fF~lP~e~K~~~~~~~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~~-----~-------------~~~wP~~~~~f~~~~ 154 (288)
||+||.|+|+++... ....+||.... ...+..||+|.|.++.. | .|.||+.+++||+++
T Consensus 79 FF~LP~eeK~~~~~~-~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~ 155 (345)
T PLN02750 79 FFDQTTEEKRKVKRD-EVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELC 155 (345)
T ss_pred HHcCCHHHHHhhccC-CCCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHH
Confidence 999999999998543 33456885321 22345699999987531 1 367999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCe
Q 023033 155 QEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGL 234 (288)
Q Consensus 155 ~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GL 234 (288)
++|++.|.+|+.+|+++||++||+++++|.+.+ . .+.+.||++||||++.++..+|+++|||+|+||||+||+++||
T Consensus 156 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GL 232 (345)
T PLN02750 156 QEYARQVEKLAFKLLELISLSLGLPADRLNGYF--K-DQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGL 232 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--c-CcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCce
Confidence 999999999999999999999999999999998 6 6678999999999998878899999999999999999999999
Q ss_pred EEee--CCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 235 HVRH--DGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 235 qv~~--~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
||+. +|+|++|+|.||++|||+||+||+ |||| |+||+|||+.+++.
T Consensus 233 QV~~~~~g~Wi~V~p~pg~~vVNiGD~L~~-~Tng~~~St~HRVv~~~~~ 281 (345)
T PLN02750 233 QISRRSDGEWIPVKPIPDAFIINIGNCMQV-WTNDLYWSAEHRVVVNSQK 281 (345)
T ss_pred EEeecCCCeEEEccCCCCeEEEEhHHHHHH-HhCCeeecccceeccCCCC
Confidence 9975 899999999999999999999999 9999 99999999987543
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.9e-65 Score=462.49 Aligned_cols=243 Identities=28% Similarity=0.502 Sum_probs=216.2
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCcee
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR 114 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~g 114 (288)
.++||+|||+.+.++++.++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...+....+|
T Consensus 3 ~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~G 82 (320)
T PTZ00273 3 RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRG 82 (320)
T ss_pred CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCC
Confidence 46899999999988787788899999999999999999999999999999999999999999999999986554556789
Q ss_pred ccccccc--cCCcccccccccccccc---------------CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 023033 115 WGTSFNV--NVDKTLFWRDYLKIHVH---------------PQFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLG 177 (288)
Q Consensus 115 y~~~~~~--~~~~~~d~~e~~~~~~~---------------~~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lg 177 (288)
|+..... ...+..||+|.|.++.. ..|.||+.+|+|++.+++|+++|.+|+.+|+++||++||
T Consensus 83 Y~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lg 162 (320)
T PTZ00273 83 YGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIG 162 (320)
T ss_pred CCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9754321 12445699999987631 146799888999999999999999999999999999999
Q ss_pred CCHHHHHHhccccCCCcceeEeeccCCCCCC-CCccCCCCccccCceEEEEcCCCCCeEEee-CCeeEeecCCCCcEEEE
Q 023033 178 LEESYIQKAMDLETDSHQLLVVNLYPPCPQP-EVVMGLPPHSDHGLLTILMQNDHVGLHVRH-DGKWIPVNPPPGSFVVN 255 (288)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~-~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~-~g~W~~V~~~~~~~vVn 255 (288)
+++++|.+.+ . .+.+.||++|||+++.+ +..+|+++|||+|+||||+||.++||||+. +|+|++|+|.||++|||
T Consensus 163 l~~~~f~~~~--~-~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lvVN 239 (320)
T PTZ00273 163 LREDFFDSKF--M-EPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFVVN 239 (320)
T ss_pred cCHHHHHHhh--C-CCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEEEE
Confidence 9999999988 6 66788999999999864 468899999999999999999999999997 99999999999999999
Q ss_pred echhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 256 IGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 256 ~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
+||+||+ |||| ||||+|||+.+...
T Consensus 240 vGD~l~~-~TnG~~kSt~HRVv~~~~~ 265 (320)
T PTZ00273 240 IGDMMEM-WSNGRYRSTPHRVVNTGVE 265 (320)
T ss_pred HHHHHHH-HHCCeeeCCCccccCCCCC
Confidence 9999999 9999 99999999876543
No 17
>PLN02485 oxidoreductase
Probab=100.00 E-value=5.3e-64 Score=454.47 Aligned_cols=244 Identities=27% Similarity=0.428 Sum_probs=210.1
Q ss_pred CCCCceeecCCCCCC--C-----hhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcC
Q 023033 35 AETIPIIDFSMLTSG--S-----PEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGK 107 (288)
Q Consensus 35 ~~~iPvIDls~l~~~--d-----~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~ 107 (288)
...||+|||+.|.++ + +.+|.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 5 ~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~ 84 (329)
T PLN02485 5 FKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMT 84 (329)
T ss_pred CCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccc
Confidence 457999999998642 2 235677899999999999999999999999999999999999999999999998655
Q ss_pred CCCCceeccccccccCCccccccccccccc--------------cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 023033 108 KLFDPIRWGTSFNVNVDKTLFWRDYLKIHV--------------HPQFNAPQNPLGFSETIQEYCKRVRELANELLKGIM 173 (288)
Q Consensus 108 ~~~~~~gy~~~~~~~~~~~~d~~e~~~~~~--------------~~~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la 173 (288)
....++||.........+..||+|.+.++. ...|.||+.+++||+.+++|+++|.+++.+|+++||
T Consensus 85 ~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a 164 (329)
T PLN02485 85 PAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIA 164 (329)
T ss_pred CCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568996543233345678999887642 124679998899999999999999999999999999
Q ss_pred HHcCCCHHHHHHhccccCCCcceeEeeccCCCCC----CCCccCCCCccccCceEEEEcC-CCCCeEEee-CCeeEeecC
Q 023033 174 ESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQ----PEVVMGLPPHSDHGLLTILMQN-DHVGLHVRH-DGKWIPVNP 247 (288)
Q Consensus 174 ~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~----~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~~-~g~W~~V~~ 247 (288)
++||+++++|.+.+ ...+.+.||++|||+++. ++..+|+++|||+|+||||+|+ +++||||+. +|+|++|+|
T Consensus 165 ~~Lgl~~~~f~~~~--~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p 242 (329)
T PLN02485 165 LALGGSPDEFEGKM--AGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIP 242 (329)
T ss_pred HHcCCChHHhhhhh--ccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCC
Confidence 99999999998765 325567899999999985 4568999999999999999997 589999997 999999999
Q ss_pred CCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 248 PPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 248 ~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
.||++|||+||+||+ |||| |+||+|||+.+++.
T Consensus 243 ~pg~~vVNiGD~L~~-~TnG~~~St~HRVv~~~~~ 276 (329)
T PLN02485 243 IPGTFVCNIGDMLKI-WSNGVYQSTLHRVINNSPK 276 (329)
T ss_pred CCCcEEEEhHHHHHH-HHCCEeeCCCceecCCCCC
Confidence 999999999999999 9999 99999999987554
No 18
>PLN02997 flavonol synthase
Probab=100.00 E-value=8.6e-64 Score=450.42 Aligned_cols=235 Identities=28% Similarity=0.506 Sum_probs=205.7
Q ss_pred CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCce
Q 023033 34 EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPI 113 (288)
Q Consensus 34 ~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 113 (288)
+..+||+|||+.+. +.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ..++
T Consensus 29 ~~~~IPvIDls~~~------~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~--~~~~ 100 (325)
T PLN02997 29 SAVDVPVVDLSVSD------EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE--EDFE 100 (325)
T ss_pred CCCCCCeEECCCCC------HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC--CCcc
Confidence 34589999999752 347899999999999999999999999999999999999999999999998542 3467
Q ss_pred eccccccccCCccccccccccccccC-----CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcc
Q 023033 114 RWGTSFNVNVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMD 188 (288)
Q Consensus 114 gy~~~~~~~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~ 188 (288)
||.... ..+..+|+|.+.....+ .+.||+.+++||+++++|+++|.+|+.+|+++|+++||+++++|.+.+.
T Consensus 101 GY~~~~---~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~ 177 (325)
T PLN02997 101 GYKRNY---LGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIG 177 (325)
T ss_pred ccCccc---ccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 887543 24556888876543322 2569998899999999999999999999999999999999999999882
Q ss_pred ccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-
Q 023033 189 LETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH- 267 (288)
Q Consensus 189 ~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG- 267 (288)
.. ...+.||++||||++.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++|||+||+||+ ||||
T Consensus 178 ~~-~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le~-~TNG~ 255 (325)
T PLN02997 178 GE-TAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAFKDEQWLDLNYINSAVVVIIGDQLMR-MTNGR 255 (325)
T ss_pred CC-cccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEeECCcEEECCCCCCeEEEEechHHHH-HhCCc
Confidence 11 23458999999999988889999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCceEEeCCcc
Q 023033 268 FYLYLHSIYSLNVC 281 (288)
Q Consensus 268 ~~s~~HRV~~~~~~ 281 (288)
||||+|||+.++..
T Consensus 256 ~kSt~HRVv~~~~~ 269 (325)
T PLN02997 256 FKNVLHRAKTDKER 269 (325)
T ss_pred cccccceeeCCCCC
Confidence 99999999987654
No 19
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=3.7e-63 Score=444.71 Aligned_cols=243 Identities=44% Similarity=0.745 Sum_probs=218.4
Q ss_pred CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCce
Q 023033 34 EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPI 113 (288)
Q Consensus 34 ~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 113 (288)
...+||+|||+.+...++ .+..++++|++||++||||+++|||||.++++++++.+++||+||.|+|+++..... .+.
T Consensus 14 ~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~~~ 91 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPG-KYR 91 (322)
T ss_pred cCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCC-Ccc
Confidence 346899999998876565 688899999999999999999999999999999999999999999999999965443 678
Q ss_pred eccccccccCCccccccccccccccCC-----CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcc
Q 023033 114 RWGTSFNVNVDKTLFWRDYLKIHVHPQ-----FNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMD 188 (288)
Q Consensus 114 gy~~~~~~~~~~~~d~~e~~~~~~~~~-----~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~ 188 (288)
||+..+........+|++.+.+...|. +.||+.++.||+++++|.+++.+|+.+|+++|+++||++.+++.+.+
T Consensus 92 gY~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~- 170 (322)
T KOG0143|consen 92 GYGTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLF- 170 (322)
T ss_pred cccccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhh-
Confidence 998776544456789999998766553 45999999999999999999999999999999999999987777777
Q ss_pred ccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCCeEEee-CCeeEeecCCCCcEEEEechhhhHHhhc
Q 023033 189 LETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVGLHVRH-DGKWIPVNPPPGSFVVNIGDHMEVILSN 266 (288)
Q Consensus 189 ~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~~-~g~W~~V~~~~~~~vVn~Gd~l~~~~Tn 266 (288)
.....+.||++||||||+|+.++|+++|||.|+||+|+|| +++||||.+ +|+|++|+|.||++|||+||+||+ |||
T Consensus 171 -~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~~-lSN 248 (322)
T KOG0143|consen 171 -GETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQI-LSN 248 (322)
T ss_pred -CCccceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHhH-hhC
Confidence 5234668999999999999999999999999999999997 899999995 999999999999999999999999 999
Q ss_pred C-CcCCCceEEeCCcc
Q 023033 267 H-FYLYLHSIYSLNVC 281 (288)
Q Consensus 267 G-~~s~~HRV~~~~~~ 281 (288)
| |||+.|||+++..+
T Consensus 249 G~ykSv~HRV~~n~~~ 264 (322)
T KOG0143|consen 249 GRYKSVLHRVVVNGEK 264 (322)
T ss_pred CcccceEEEEEeCCCC
Confidence 9 99999999998766
No 20
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=8.7e-63 Score=443.53 Aligned_cols=238 Identities=31% Similarity=0.572 Sum_probs=204.8
Q ss_pred CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCce
Q 023033 34 EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPI 113 (288)
Q Consensus 34 ~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 113 (288)
.+++||+|||+.+.. .++.+++++|++||++||||||+|||||.++++++++++++||+||.|+|+++.. . .+
T Consensus 3 ~~~~iPvIDls~~~~---~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~-~---~~ 75 (321)
T PLN02299 3 KMESFPVIDMEKLNG---EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV-A---SK 75 (321)
T ss_pred CCCCCCEEECcCCCc---ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc-C---CC
Confidence 356899999999842 2466789999999999999999999999999999999999999999999999743 2 24
Q ss_pred eccccccccCCccccccccccccccCC---CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcccc
Q 023033 114 RWGTSFNVNVDKTLFWRDYLKIHVHPQ---FNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLE 190 (288)
Q Consensus 114 gy~~~~~~~~~~~~d~~e~~~~~~~~~---~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~ 190 (288)
||.... ...+..||+|.|.++..+. +.||+.+++||+.+++|+++|.+|+.+|+++|+++||+++++|.+.+...
T Consensus 76 gy~~~~--~~~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 153 (321)
T PLN02299 76 GLEGVQ--TEVEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGS 153 (321)
T ss_pred Cccccc--ccCCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Confidence 553221 1124568999998764432 45999889999999999999999999999999999999999999887211
Q ss_pred CCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-C
Q 023033 191 TDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-F 268 (288)
Q Consensus 191 ~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~ 268 (288)
....+.||++|||||+.++...|+++|||+|+||||+|+ +++||||+.+|+|++|+|.||++|||+||+||+ |||| |
T Consensus 154 ~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~~-~Tng~~ 232 (321)
T PLN02299 154 KGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEV-ITNGKY 232 (321)
T ss_pred CCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHHH-HhCCce
Confidence 134567999999999988888899999999999999996 599999999999999999999999999999999 9999 9
Q ss_pred cCCCceEEeCCcc
Q 023033 269 YLYLHSIYSLNVC 281 (288)
Q Consensus 269 ~s~~HRV~~~~~~ 281 (288)
||++|||+.+...
T Consensus 233 kS~~HRVv~~~~~ 245 (321)
T PLN02299 233 KSVMHRVVAQTDG 245 (321)
T ss_pred ecccceeecCCCC
Confidence 9999999987543
No 21
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.8e-62 Score=442.75 Aligned_cols=238 Identities=24% Similarity=0.383 Sum_probs=202.6
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCcee
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR 114 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~g 114 (288)
..+||+|||+.. ++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... ...+|
T Consensus 12 ~~~iP~IDl~~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~--~~~~G 83 (332)
T PLN03002 12 VSSLNCIDLAND------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN--EKHRG 83 (332)
T ss_pred CCCCCEEeCCch------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC--CCCCC
Confidence 458999999942 3456899999999999999999999999999999999999999999999998543 34689
Q ss_pred cccccccc----CCcccccccccccccc-------------CCCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023033 115 WGTSFNVN----VDKTLFWRDYLKIHVH-------------PQFNAPQN--PLGFSETIQEYCKRVRELANELLKGIMES 175 (288)
Q Consensus 115 y~~~~~~~----~~~~~d~~e~~~~~~~-------------~~~~wP~~--~~~f~~~~~~y~~~~~~la~~ll~~la~~ 175 (288)
|....... .....||+|.|.++.. ..|.||+. +|+||+.+++|+++|.+|+..|+++||++
T Consensus 84 Y~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 163 (332)
T PLN03002 84 YTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALA 163 (332)
T ss_pred cCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97543211 1123699999987642 13669974 68999999999999999999999999999
Q ss_pred cCCCHHHHHHhccccCCCcceeEeeccCCCCCCC-CccCCCCccccCceEEEEcCCCCCeEEeeC-----CeeEeecCCC
Q 023033 176 LGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPE-VVMGLPPHSDHGLLTILMQNDHVGLHVRHD-----GKWIPVNPPP 249 (288)
Q Consensus 176 Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~-~~~~~~~HtD~~~lTlL~q~~~~GLqv~~~-----g~W~~V~~~~ 249 (288)
||+++++|.+....+ .+.+.||++|||+++.++ ..+|+++|||+|+||||+||+++||||+++ |+|++|||+|
T Consensus 164 Lgl~~~~f~~~~~~~-~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~p 242 (332)
T PLN03002 164 LDLDVGYFDRTEMLG-KPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIK 242 (332)
T ss_pred cCCChHHhccccccC-CCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCC
Confidence 999999998632114 556889999999998765 478999999999999999999999999863 6899999999
Q ss_pred CcEEEEechhhhHHhhcC-CcCCCceEEeCCcce
Q 023033 250 GSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVCV 282 (288)
Q Consensus 250 ~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~~ 282 (288)
|++|||+||+||+ |||| ||||+|||+.+...+
T Consensus 243 g~~VVNiGD~L~~-wTng~~kSt~HRVv~~~~~R 275 (332)
T PLN03002 243 GAFIVNLGDMLER-WSNGFFKSTLHRVLGNGQER 275 (332)
T ss_pred CeEEEEHHHHHHH-HhCCeeECcCCeecCCCCCe
Confidence 9999999999999 9999 999999999876443
No 22
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=1.5e-61 Score=436.94 Aligned_cols=230 Identities=29% Similarity=0.543 Sum_probs=196.8
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceecc
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWG 116 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~ 116 (288)
.||+|||+. + +..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ...||+
T Consensus 26 ~iPvIDls~-----~----~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~~~Gy~ 93 (335)
T PLN02156 26 LIPVIDLTD-----S----DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---DPFGYG 93 (335)
T ss_pred CCCcccCCC-----h----HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---CCcccC
Confidence 699999983 2 2457899999999999999999999999999999999999999999998532 345886
Q ss_pred ccccccCCccccccccccccccC-------CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHhcc
Q 023033 117 TSFNVNVDKTLFWRDYLKIHVHP-------QFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLE-ESYIQKAMD 188 (288)
Q Consensus 117 ~~~~~~~~~~~d~~e~~~~~~~~-------~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~-~~~~~~~~~ 188 (288)
... .......+|+|.+.+...+ .+.||+.++.||+.+++|+++|.+|+.+|+++|+++||++ +++|.+++.
T Consensus 94 ~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~ 172 (335)
T PLN02156 94 TKR-IGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVK 172 (335)
T ss_pred ccc-cCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhc
Confidence 432 1223345899988775422 3569988889999999999999999999999999999996 478988773
Q ss_pred ccCCCcceeEeeccCCCCCC--CCccCCCCccccCceEEEEcCCCCCeEEee-CCeeEeecCCCCcEEEEechhhhHHhh
Q 023033 189 LETDSHQLLVVNLYPPCPQP--EVVMGLPPHSDHGLLTILMQNDHVGLHVRH-DGKWIPVNPPPGSFVVNIGDHMEVILS 265 (288)
Q Consensus 189 ~~~~~~~~lrl~~Yp~~~~~--~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~-~g~W~~V~~~~~~~vVn~Gd~l~~~~T 265 (288)
.. ...+.||++|||+|+.. +..+|+++|||+|+||||+||+++||||+. +|+|++|+|.||++|||+||+||+ ||
T Consensus 173 ~~-~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~-wT 250 (335)
T PLN02156 173 VK-ESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQV-MT 250 (335)
T ss_pred CC-CccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHH-Hh
Confidence 22 44578999999999853 257899999999999999999999999985 999999999999999999999999 99
Q ss_pred cC-CcCCCceEEeCCcc
Q 023033 266 NH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 266 nG-~~s~~HRV~~~~~~ 281 (288)
|| ||||.|||+.+.+.
T Consensus 251 Ng~~kSt~HRVv~~~~~ 267 (335)
T PLN02156 251 NGRFKSVKHRVVTNTKR 267 (335)
T ss_pred CCeeeccceeeecCCCC
Confidence 99 99999999977544
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-61 Score=438.41 Aligned_cols=229 Identities=29% Similarity=0.488 Sum_probs=193.5
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCC-CC-Cc
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKK-LF-DP 112 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~-~~-~~ 112 (288)
..+||+|||+.+ .+++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++.... .. ..
T Consensus 36 ~~~IPvIDls~~----------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECL----------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYF 105 (341)
T ss_pred cCCCCeEeCcHH----------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccc
Confidence 456999999875 2479999999999999999999999999999999999999999999985211 11 11
Q ss_pred eeccccccc---c----CCccccccccccccccC---CCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 023033 113 IRWGTSFNV---N----VDKTLFWRDYLKIHVHP---QFNAP---QNPLGFSETIQEYCKRVRELANELLKGIMESLGLE 179 (288)
Q Consensus 113 ~gy~~~~~~---~----~~~~~d~~e~~~~~~~~---~~~wP---~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~ 179 (288)
.||...... . ..+..||+|.|.++..+ .+.|| ..+++||+.+++|+++|.+|+.+|+++||++||++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~ 185 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLE 185 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 222111100 0 11256999999986432 12242 33578999999999999999999999999999999
Q ss_pred --HHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEeeCCeeEeecCCCCcEEEEec
Q 023033 180 --ESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIG 257 (288)
Q Consensus 180 --~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~~g~W~~V~~~~~~~vVn~G 257 (288)
+++|.+.+ . .+.+.||++|||||+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++|||+|
T Consensus 186 ~~~~~f~~~~--~-~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~Wv~V~p~pgalVVNiG 262 (341)
T PLN02984 186 LSGDQKMSYL--S-ESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVMKDGEWFNVKPIANTLVVNLG 262 (341)
T ss_pred cchhHHHHHh--c-CccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEeeCCceEECCCCCCeEEEECC
Confidence 99999988 6 667899999999999887889999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcC-CcCCCceEEe
Q 023033 258 DHMEVILSNH-FYLYLHSIYS 277 (288)
Q Consensus 258 d~l~~~~TnG-~~s~~HRV~~ 277 (288)
|+||+ |||| ||||+|||+.
T Consensus 263 D~Le~-wTNg~~kSt~HRVv~ 282 (341)
T PLN02984 263 DMMQV-ISDDEYKSVLHRVGK 282 (341)
T ss_pred hhhhh-hcCCeeeCCCCcccc
Confidence 99999 9999 9999999964
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=5.8e-61 Score=427.83 Aligned_cols=234 Identities=32% Similarity=0.562 Sum_probs=198.8
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceecc
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWG 116 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~ 116 (288)
+||+|||+.+.. ++|.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|... . .. ..++.
T Consensus 2 ~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~-~-~~--~~~~~ 74 (303)
T PLN02403 2 EIPVIDFDQLDG---EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYE-S-EI--AKALD 74 (303)
T ss_pred CCCeEeCccCCc---ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhc-c-cc--cCccc
Confidence 699999998852 35678999999999999999999999999999999999999999999998621 1 11 11111
Q ss_pred ccccccCCccccccccccccccC---CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCC
Q 023033 117 TSFNVNVDKTLFWRDYLKIHVHP---QFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDS 193 (288)
Q Consensus 117 ~~~~~~~~~~~d~~e~~~~~~~~---~~~wP~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~ 193 (288)
. ....+..||+|.|.++..| .+.||+.+|+||+.+++|+++|.+++..|+++|+++||+++++|.+.+..+...
T Consensus 75 ~---~~~~~~~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~ 151 (303)
T PLN02403 75 N---EGKTSDVDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGP 151 (303)
T ss_pred c---cCCCCCccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCc
Confidence 1 1123356999999987544 356998889999999999999999999999999999999999999887211123
Q ss_pred cceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCCeEEeeCCeeEeecCCC-CcEEEEechhhhHHhhcC-CcC
Q 023033 194 HQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVGLHVRHDGKWIPVNPPP-GSFVVNIGDHMEVILSNH-FYL 270 (288)
Q Consensus 194 ~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~~~g~W~~V~~~~-~~~vVn~Gd~l~~~~TnG-~~s 270 (288)
.+.+|++|||+++.++...|+++|||+|+||||+|+ +++||||+.+|+|++|+|.| |++|||+||+||+ |||| |||
T Consensus 152 ~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~~-~Tng~~~S 230 (303)
T PLN02403 152 SVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLEV-LSNGRYKS 230 (303)
T ss_pred cceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHHH-HhCCeeec
Confidence 346999999999988778899999999999999997 59999998899999999999 6999999999999 9999 999
Q ss_pred CCceEEeCCcc
Q 023033 271 YLHSIYSLNVC 281 (288)
Q Consensus 271 ~~HRV~~~~~~ 281 (288)
++|||+.+...
T Consensus 231 ~~HRVv~~~~~ 241 (303)
T PLN02403 231 TLHRVMADKNG 241 (303)
T ss_pred ccceeecCCCC
Confidence 99999987543
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=1.3e-58 Score=413.67 Aligned_cols=223 Identities=31% Similarity=0.479 Sum_probs=189.1
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceec
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRW 115 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy 115 (288)
..||+|||+.+. ..+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+||
T Consensus 4 ~~iPvIDls~~~--------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~--~~~~GY 73 (300)
T PLN02365 4 VNIPTIDLEEFP--------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV--ILGSGY 73 (300)
T ss_pred CCCCEEEChhhH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC--CCCCCC
Confidence 469999999872 2358999999999999999999999999999999999999999999996432 234688
Q ss_pred cccccccCCccccccccccccc--cC--CCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHhc
Q 023033 116 GTSFNVNVDKTLFWRDYLKIHV--HP--QFNAP---QNPLGFSETIQEYCKRVRELANELLKGIMESLGL-EESYIQKAM 187 (288)
Q Consensus 116 ~~~~~~~~~~~~d~~e~~~~~~--~~--~~~wP---~~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl-~~~~~~~~~ 187 (288)
.... ...+++|.+.+.. .+ .+.|| ..+++||+.+++|+++|.+|+.+|+++|+++||+ ++++|.+.
T Consensus 74 ~~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~- 147 (300)
T PLN02365 74 MAPS-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW- 147 (300)
T ss_pred CCcC-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc-
Confidence 6432 1235777776542 11 12354 3457899999999999999999999999999999 77787653
Q ss_pred cccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcC-CCCCeEEee--CCeeEeecCCCCcEEEEechhhhHHh
Q 023033 188 DLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQN-DHVGLHVRH--DGKWIPVNPPPGSFVVNIGDHMEVIL 264 (288)
Q Consensus 188 ~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~-~~~GLqv~~--~g~W~~V~~~~~~~vVn~Gd~l~~~~ 264 (288)
.+.||++|||+++.++..+|+++|||+|+||||+|| +++||||++ +|+|++|+|.||++|||+||+||+ |
T Consensus 148 ------~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~~-~ 220 (300)
T PLN02365 148 ------PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVATA-W 220 (300)
T ss_pred ------ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHHH-H
Confidence 257999999999988888999999999999999998 499999987 689999999999999999999999 9
Q ss_pred hcC-CcCCCceEEeCCcc
Q 023033 265 SNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 265 TnG-~~s~~HRV~~~~~~ 281 (288)
||| ||||+|||+++++.
T Consensus 221 TNG~~~St~HRVv~~~~~ 238 (300)
T PLN02365 221 SNGRLCNVKHRVQCKEAT 238 (300)
T ss_pred hCCceecccceeEcCCCC
Confidence 999 99999999987643
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.5e-51 Score=357.21 Aligned_cols=191 Identities=34% Similarity=0.556 Sum_probs=167.2
Q ss_pred HHHHHHHhc-CCHHHHHhhhcCC-CCCceeccccccc--cCCccccccccccccccC-----CCCCCCCCcchHHHHHHH
Q 023033 87 IRASESFFD-LSDEQKREYAGKK-LFDPIRWGTSFNV--NVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSETIQEY 157 (288)
Q Consensus 87 ~~~~~~fF~-lP~e~K~~~~~~~-~~~~~gy~~~~~~--~~~~~~d~~e~~~~~~~~-----~~~wP~~~~~f~~~~~~y 157 (288)
.+.+++||+ ||.|+|+++.... ...++||+..... ...+..||+|.|.+...| .+.||+.+++|++.+++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 567899997 9999999986543 2346799654321 123456999999886433 356999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccCceEEEEcCCCCCeEEe
Q 023033 158 CKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVR 237 (288)
Q Consensus 158 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~ 237 (288)
+++|.+|+.+|+++|+++||+++++|.+.+ . ...+.+|++|||||+.++..+|+++|||+|+||||+||+++||||+
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~--~-~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~ 158 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAV--G-DFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLL 158 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHh--c-CcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCCCCceEEe
Confidence 999999999999999999999999999988 5 5567899999999998888999999999999999999999999999
Q ss_pred eCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCCCceEEeCCcc
Q 023033 238 HDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLYLHSIYSLNVC 281 (288)
Q Consensus 238 ~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~~HRV~~~~~~ 281 (288)
.+|+|++|+|.||++|||+||+||+ |||| |+|++|||+++...
T Consensus 159 ~~g~Wi~V~p~p~a~vVNiGD~l~~-~tng~~~S~~HRVv~~~~~ 202 (262)
T PLN03001 159 KDAEWLMVPPISDAILIIIADQTEI-ITNGNYKSAQHRAIANANK 202 (262)
T ss_pred eCCeEEECCCCCCcEEEEccHHHHH-HhCCccccccceEEcCCCC
Confidence 9999999999999999999999999 9999 99999999987544
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.90 E-value=8e-24 Score=163.58 Aligned_cols=95 Identities=32% Similarity=0.607 Sum_probs=81.4
Q ss_pred CceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCceeccc
Q 023033 38 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGT 117 (288)
Q Consensus 38 iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~gy~~ 117 (288)
||||||+. +.++|.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.. +..++||..
T Consensus 1 iPvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~--~~~~~Gy~~ 74 (116)
T PF14226_consen 1 IPVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYAR--SPSYRGYSP 74 (116)
T ss_dssp --EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBC--CTTCSEEEE
T ss_pred CCeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcC--CCCCccccc
Confidence 79999998 567899999999999999999999999999999999999999999999999999943 347899976
Q ss_pred cccccCC-cccccccccccccc
Q 023033 118 SFNVNVD-KTLFWRDYLKIHVH 138 (288)
Q Consensus 118 ~~~~~~~-~~~d~~e~~~~~~~ 138 (288)
....... +..||+|.|.++..
T Consensus 75 ~~~~~~~~~~~d~~E~~~~~~~ 96 (116)
T PF14226_consen 75 PGSESTDGGKPDWKESFNIGPD 96 (116)
T ss_dssp SEEECCTTCCCCSEEEEEEECC
T ss_pred CCccccCCCCCCceEEeEEECC
Confidence 5444344 48999999998865
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.89 E-value=9.2e-23 Score=157.72 Aligned_cols=104 Identities=23% Similarity=0.419 Sum_probs=87.5
Q ss_pred CCCCCCCcCCCCCCCcCCCC-CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHH
Q 023033 14 TSVPSKYFFEKDLNDDCINS-EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASES 92 (288)
Q Consensus 14 ~~~p~~~~~p~~~~~~~~~~-~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~ 92 (288)
..+|..|++|..++|..... ...+||+|||+.+.++++ .|.+++++|++||++||||||+||||+.++++++++.+++
T Consensus 13 ~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~-~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~ 91 (120)
T PLN03176 13 KTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGE-KRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKE 91 (120)
T ss_pred CCCCHhhcCChhhCcCccccccCCCCCeEECccccCCch-HHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 68999999999888743221 234799999999987664 5778899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHhhhcCCCCCceeccccc
Q 023033 93 FFDLSDEQKREYAGKKLFDPIRWGTSF 119 (288)
Q Consensus 93 fF~lP~e~K~~~~~~~~~~~~gy~~~~ 119 (288)
||+||.|+|+++...+ ....||+..+
T Consensus 92 FF~LP~e~K~k~~~~~-~~~~gy~~~~ 117 (120)
T PLN03176 92 FFALPPEEKLRFDMSG-GKKGGFIVSS 117 (120)
T ss_pred HHCCCHHHHHhcccCC-CccCCcchhc
Confidence 9999999999986543 4466887553
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.86 E-value=6.7e-22 Score=148.22 Aligned_cols=89 Identities=45% Similarity=0.832 Sum_probs=67.6
Q ss_pred ceeEeeccCCCCCCCCccCCCCcccc--CceEEEEcCCCCCeEEeeCCeeEeecCCCCcEEEEechhhhHHhhcC-CcCC
Q 023033 195 QLLVVNLYPPCPQPEVVMGLPPHSDH--GLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEVILSNH-FYLY 271 (288)
Q Consensus 195 ~~lrl~~Yp~~~~~~~~~~~~~HtD~--~~lTlL~q~~~~GLqv~~~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG-~~s~ 271 (288)
+.||+++||+ ++...++++|+|. +++|+|+|++++|||+...++|+.|++.++.++||+||+|++ |||| ++|+
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~-~t~g~~~~~ 77 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEI-LTNGRYPAT 77 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHHH-HTTTSS---
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccccccccCccCccceeeeeceeeeec-ccCCccCCc
Confidence 4699999998 5667899999999 999999999999999999889999999999999999999999 9999 9999
Q ss_pred CceEEeCC-cceeeEEE
Q 023033 272 LHSIYSLN-VCVCLYIY 287 (288)
Q Consensus 272 ~HRV~~~~-~~~~~~~~ 287 (288)
.|||+.+. +.+.-..|
T Consensus 78 ~HrV~~~~~~~R~s~~~ 94 (98)
T PF03171_consen 78 LHRVVPPTEGERYSLTF 94 (98)
T ss_dssp -EEEE--STS-EEEEEE
T ss_pred eeeeEcCCCCCEEEEEE
Confidence 99999986 44443333
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=92.24 E-value=0.13 Score=37.73 Aligned_cols=65 Identities=28% Similarity=0.419 Sum_probs=42.1
Q ss_pred eEeeccCCCCCCCCccCCCCcccc-----CceEEEEc--CC-----CCCeEEee----CCeeEeec-----CCCCcEEEE
Q 023033 197 LVVNLYPPCPQPEVVMGLPPHSDH-----GLLTILMQ--ND-----HVGLHVRH----DGKWIPVN-----PPPGSFVVN 255 (288)
Q Consensus 197 lrl~~Yp~~~~~~~~~~~~~HtD~-----~~lTlL~q--~~-----~~GLqv~~----~g~W~~V~-----~~~~~~vVn 255 (288)
|++++|++ .....+|+|. ..+|+++. +. .+.|++.. ++....++ |.+|.+|+.
T Consensus 1 ~~~~~y~~------G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPP------GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEET------TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECc------CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 46777763 2346799998 58898853 22 35688874 34556666 999999988
Q ss_pred echhhhHHhhcCCcCCCceEEeC
Q 023033 256 IGDHMEVILSNHFYLYLHSIYSL 278 (288)
Q Consensus 256 ~Gd~l~~~~TnG~~s~~HRV~~~ 278 (288)
-+ .. .+|+|...
T Consensus 75 ~~---~~--------~~H~v~~v 86 (100)
T PF13640_consen 75 PS---DN--------SLHGVTPV 86 (100)
T ss_dssp ES---CT--------CEEEEEEE
T ss_pred eC---CC--------CeecCccc
Confidence 77 22 48888776
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=83.96 E-value=8.1 Score=31.43 Aligned_cols=79 Identities=22% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHhccccCCCcceeEeeccCCCCCCCCccCCCCccccC--------ceEEEEc--C--CC
Q 023033 164 LANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHG--------LLTILMQ--N--DH 231 (288)
Q Consensus 164 la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~--------~lTlL~q--~--~~ 231 (288)
+...|.+.++..++++.. .. .....+++.+|.+. -...+|.|.. .+|+++. + ..
T Consensus 60 ~~~~l~~~i~~~~~~~~~----~~----~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~G 125 (178)
T smart00702 60 VIERIRQRLADFLGLLRG----LP----LSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEG 125 (178)
T ss_pred HHHHHHHHHHHHHCCCch----hh----ccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcC
Confidence 455556666666666421 11 22345789999852 2467899966 6888874 2 23
Q ss_pred CCeEEeeCC--eeEeecCCCCcEEEEe
Q 023033 232 VGLHVRHDG--KWIPVNPPPGSFVVNI 256 (288)
Q Consensus 232 ~GLqv~~~g--~W~~V~~~~~~~vVn~ 256 (288)
|.|.+...+ ....|.|..|.+|+.-
T Consensus 126 G~~~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 126 GELVFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred ceEEecCCCCccceEEeCCCCcEEEEe
Confidence 447776633 2568899999887754
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=79.62 E-value=12 Score=32.15 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCCeEEee-CCeeEeecCCCCcEEEEechhhhHHhhcCCcCCCceEEe
Q 023033 231 HVGLHVRH-DGKWIPVNPPPGSFVVNIGDHMEVILSNHFYLYLHSIYS 277 (288)
Q Consensus 231 ~~GLqv~~-~g~W~~V~~~~~~~vVn~Gd~l~~~~TnG~~s~~HRV~~ 277 (288)
.|.|.+.+ .|. ..|+|..|.+|+.-. +.+|+|..
T Consensus 129 GGEl~~~~~~g~-~~Vkp~aG~~vlfps------------~~lH~v~p 163 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKLPAGDLVLYPS------------TSLHRVTP 163 (226)
T ss_pred CCceEEecCCCc-EEEecCCCeEEEECC------------CCceeeee
Confidence 45688876 444 578888777776543 35788875
No 33
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=70.81 E-value=4.1 Score=38.14 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=37.4
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhc
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFD 95 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~ 95 (288)
..-||.|||+++.++. ..++..+.+++.|++.|.|. ||.+...+..+..++|.+
T Consensus 47 ~~~IP~i~f~di~~~~------~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 47 SSIIPEIDFADIENGG------VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp --SS-EEEHHHHHCT---------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCceeeHHHHhCCC------CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 3469999999987532 34667788899999999765 888887777777777754
No 34
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=66.46 E-value=11 Score=31.05 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=35.6
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.+|++++... +++ +.++.+.+++.+...+.|.|||+=. +.+++++..+..
T Consensus 120 ~v~v~~~~~~--g~~----~la~~~~~~l~~~~~vll~nHGv~~~G~~~~eA~~~~e~ 171 (184)
T PRK08333 120 KIPILPFRPA--GSV----ELAEQVAEAMKEYDAVIMERHGIVTVGRSLREAFYKAEL 171 (184)
T ss_pred CEeeecCCCC--CcH----HHHHHHHHHhccCCEEEEcCCCCEEEcCCHHHHHHHHHH
Confidence 6899988653 344 6788888999988899999999632 345555554443
No 35
>PRK08130 putative aldolase; Validated
Probab=62.96 E-value=15 Score=31.09 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=35.9
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++++... +++ ++++.+.+++.+...+.|.|||+=. +.+++++..+..
T Consensus 127 ~i~v~~y~~~--g~~----~la~~~~~~l~~~~~vll~nHGvi~~G~s~~~A~~~~e~ 178 (213)
T PRK08130 127 HVPLIPYYRP--GDP----AIAEALAGLAARYRAVLLANHGPVVWGSSLEAAVNATEE 178 (213)
T ss_pred ccceECCCCC--ChH----HHHHHHHHHhccCCEEEEcCCCCeeeCCCHHHHHHHHHH
Confidence 5899887653 344 7888899999999999999999632 345555554444
No 36
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=62.65 E-value=11 Score=34.76 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHh
Q 023033 35 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFF 94 (288)
Q Consensus 35 ~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF 94 (288)
.+++|.||++.+.+++ +.+.++.+++.++|++.+.+-.++.+. +.+.++.|-
T Consensus 107 ~~~~~~~d~~~~~~~~-----~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G 158 (366)
T TIGR02409 107 ELSLPKFDHEAVMKDD-----SVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIG 158 (366)
T ss_pred cccCCceeHHHHhCCH-----HHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhc
Confidence 3678999998876533 467889999999999999988776543 445555553
No 37
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=56.88 E-value=20 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCC
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGV 78 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi 78 (288)
.+|++++.. .+++ ++++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~--~gs~----ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAA--SGTP----EVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCC--CCcH----HHHHHHHHHhCcCCEEEEcCCCC
Confidence 477777753 2344 78889999999999999999996
No 38
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=53.34 E-value=51 Score=28.04 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=38.4
Q ss_pred eEeeccCCCCCCCCccCCCCcccc-----C--ceEEEEcCCCCC-eEEe---eCCeeEeecCCCCcEEEEechhhhHHhh
Q 023033 197 LVVNLYPPCPQPEVVMGLPPHSDH-----G--LLTILMQNDHVG-LHVR---HDGKWIPVNPPPGSFVVNIGDHMEVILS 265 (288)
Q Consensus 197 lrl~~Yp~~~~~~~~~~~~~HtD~-----~--~lTlL~q~~~~G-Lqv~---~~g~W~~V~~~~~~~vVn~Gd~l~~~~T 265 (288)
.-+|+|.+. . +++.|.|- + ++++-+ +.+. +.+. .++.+..+....|.++|.-|+. +. |=
T Consensus 118 ~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSL--G~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s-r~-~~ 187 (213)
T PRK15401 118 CLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSL--GLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS-RL-RY 187 (213)
T ss_pred EEEEeccCc-----C-ccccccCCCcccCCCCEEEEeC--CCCeEEEecccCCCCceEEEEeCCCCEEEECchH-hh-ee
Confidence 458999742 2 78999993 2 222222 2222 2222 1556899999999999999996 55 43
Q ss_pred cC
Q 023033 266 NH 267 (288)
Q Consensus 266 nG 267 (288)
-|
T Consensus 188 Hg 189 (213)
T PRK15401 188 HG 189 (213)
T ss_pred cc
Confidence 44
No 39
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=53.10 E-value=21 Score=32.96 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=38.0
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHh
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFF 94 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF 94 (288)
..+|.+|+..+...++ +.+.++.+++.++|+..+.|-.++.+.. .+.++.|-
T Consensus 99 ~~~~~~~~~~~~~~~d----~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG 150 (362)
T TIGR02410 99 LKDPSVHFKTTYDHTD----STLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERIS 150 (362)
T ss_pred ccCCceeHHHHhccCH----HHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhc
Confidence 3468899988765323 5688999999999999999888766443 44555553
No 40
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=52.58 E-value=29 Score=29.34 Aligned_cols=62 Identities=29% Similarity=0.344 Sum_probs=39.2
Q ss_pred eeEeeccCCCCC-CCCccCCCCccccCceEEEEcCCCCCeEEee--CCeeEeecCCCCcEEEEechhhhH
Q 023033 196 LLVVNLYPPCPQ-PEVVMGLPPHSDHGLLTILMQNDHVGLHVRH--DGKWIPVNPPPGSFVVNIGDHMEV 262 (288)
Q Consensus 196 ~lrl~~Yp~~~~-~~~~~~~~~HtD~~~lTlL~q~~~~GLqv~~--~g~W~~V~~~~~~~vVn~Gd~l~~ 262 (288)
.+|.+||.|... ++-...+. |-=..+.|+..+-..+.. .|.=+.|||-=|+.++|+||-=-.
T Consensus 91 ~~~~~H~Hp~ade~E~y~vi~-----G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLv 155 (209)
T COG2140 91 AMRELHYHPNADEPEIYYVLK-----GEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLV 155 (209)
T ss_pred cccccccCCCCCcccEEEEEe-----ccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEE
Confidence 478889876543 22222222 122334445445566655 688899999999999999985444
No 41
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=51.87 E-value=37 Score=27.80 Aligned_cols=63 Identities=27% Similarity=0.384 Sum_probs=37.1
Q ss_pred eeEeeccCCCCCCCCccCCCCccccCce-------EEEEcCCCCCeEEee---CCeeEeecCCCCcEEEEechhhhHHhh
Q 023033 196 LLVVNLYPPCPQPEVVMGLPPHSDHGLL-------TILMQNDHVGLHVRH---DGKWIPVNPPPGSFVVNIGDHMEVILS 265 (288)
Q Consensus 196 ~lrl~~Yp~~~~~~~~~~~~~HtD~~~l-------TlL~q~~~~GLqv~~---~g~W~~V~~~~~~~vVn~Gd~l~~~~T 265 (288)
..-+|+|++ +. ++++|.|-..+ ||-+- ...-+.+.. .+..+.|...+|+++|.-|++=.. |
T Consensus 98 ~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG-~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~-~- 168 (194)
T PF13532_consen 98 QCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLG-SSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYD-W- 168 (194)
T ss_dssp EEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEE-S-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHH-E-
T ss_pred EEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEc-cCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhh-e-
Confidence 456899975 33 88999987633 22221 112233333 468899999999999999999777 5
Q ss_pred cC
Q 023033 266 NH 267 (288)
Q Consensus 266 nG 267 (288)
-+
T Consensus 169 H~ 170 (194)
T PF13532_consen 169 HG 170 (194)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 42
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=50.07 E-value=1.4e+02 Score=24.34 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=34.8
Q ss_pred eEeeccCCCCCCCCccCCCCccccCce-------EEEEcCCCCC-eEEee---CCeeEeecCCCCcEEEEechh
Q 023033 197 LVVNLYPPCPQPEVVMGLPPHSDHGLL-------TILMQNDHVG-LHVRH---DGKWIPVNPPPGSFVVNIGDH 259 (288)
Q Consensus 197 lrl~~Yp~~~~~~~~~~~~~HtD~~~l-------TlL~q~~~~G-Lqv~~---~g~W~~V~~~~~~~vVn~Gd~ 259 (288)
.-+|+|++. -++++|.|-.-+ .+-+ +... +.+.. ++....+...+|.++|.-|+.
T Consensus 97 ~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSL--G~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 97 CLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSL--GLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEEeecCC------CccccccccccccCCCCEEEEeC--CCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 458999853 368999995322 1111 1122 22221 455788999999999999974
No 43
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=45.14 E-value=41 Score=28.46 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=34.2
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.+|++.+... +++ ++++.+.+++.+...+.|.|||+-. +.+++++..+..
T Consensus 122 ~v~~~~y~~~--gs~----~la~~~~~~l~~~~~vLl~nHGv~~~G~~~~~A~~~~e~ 173 (215)
T PRK08087 122 SIPCAPYATF--GTR----ELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHE 173 (215)
T ss_pred CceeecCCCC--CCH----HHHHHHHHHhCcCCEEEecCCCCEEEcCCHHHHHHHHHH
Confidence 4788877643 344 6778888888888899999999632 344455544443
No 44
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=44.81 E-value=48 Score=27.17 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++ +... +++ +.++.+.+++.+.-.+.|.|||+=. +.+++++..+..
T Consensus 115 ~ipv~-~~~~--~~~----~la~~v~~~l~~~~~vll~nHG~~~~G~~i~~A~~~~e~ 165 (181)
T PRK08660 115 TIPVV-GGDI--GSG----ELAENVARALSEHKGVVVRGHGTFAIGKTLEEAYIYTSQ 165 (181)
T ss_pred CEeEE-eCCC--CCH----HHHHHHHHHHhhCCEEEEcCCCceEeCCCHHHHHHHHHH
Confidence 58888 3322 343 6788889999999999999999622 344555554443
No 45
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=44.48 E-value=40 Score=29.82 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++.+... +++ ++++.+.+++.+...+.|.|||+=. +.+++++..+..
T Consensus 179 ~i~vvpy~~p--gs~----eLa~~v~~~l~~~~avLL~nHGvv~~G~~l~eA~~~~e~ 230 (274)
T PRK03634 179 GVGIVPWMVP--GTD----EIGQATAEKMQKHDLVLWPKHGVFGSGPTLDEAFGLIDT 230 (274)
T ss_pred ceeEecCCCC--CCH----HHHHHHHHHhccCCEEEEcCCCCeEecCCHHHHHHHHHH
Confidence 4777776532 344 6788888999988999999999633 445555554443
No 46
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=44.41 E-value=34 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=18.4
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-....++++++++++.|.+++.+
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~ 29 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSE 29 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 45555444333577777777777777765
No 47
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=43.51 E-value=40 Score=29.78 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++.+.. .|+. ++++.+.+++++..-+.|.|||+=. ..+++++..+..
T Consensus 177 ~i~vvp~~~--pGs~----eLA~~v~~~l~~~~avLL~nHGvva~G~~l~eA~~~~E~ 228 (270)
T TIGR02624 177 GVGIIPWMV--PGTN----EIGEATAEKMKEHRLVLWPHHGIFGAGPSLDETFGLIET 228 (270)
T ss_pred ccccccCcC--CCCH----HHHHHHHHHhccCCEEEEcCCCCeEecCCHHHHHHHHHH
Confidence 477776654 3454 7888899999999999999999632 344555554443
No 48
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=42.59 E-value=39 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=20.0
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHhc
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLKW 68 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~~ 68 (288)
|+|.+.-+...++++++++++.|.+|+.+.
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~~ 31 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSRI 31 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 555555444346778888888888887643
No 49
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=42.53 E-value=39 Score=28.58 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++++.. .++. ++++.+.+++.+...+.|.|||+=. +.+++++..+..
T Consensus 124 ~i~~~~y~~--~gs~----~la~~v~~~l~~~~~vll~nHGv~~~G~~~~eA~~~~e~ 175 (214)
T PRK06833 124 NVRCAEYAT--FGTK----ELAENAFEAMEDRRAVLLANHGLLAGANNLKNAFNIAEE 175 (214)
T ss_pred CeeeccCCC--CChH----HHHHHHHHHhCcCCEEEECCCCCEEEeCCHHHHHHHHHH
Confidence 466666542 2333 6778888999999999999999632 345555554443
No 50
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=41.37 E-value=22 Score=29.08 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHH-hcceEEEEeCCCCh--HHHHHHHHHHH
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACL-KWGFFEVINHGVPN--TLRDEMIRASE 91 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~-~~GFf~l~nhgi~~--~~~~~~~~~~~ 91 (288)
..+|++++... +++ +.++.+.+++. +...+.+.|||+=. +.+++++..+.
T Consensus 122 ~~v~~~~~~~~--~~~----~l~~~i~~~l~~~~~~vll~nHG~~~~G~s~~~A~~~~~ 174 (184)
T PF00596_consen 122 GEVPVVPYAPP--GSE----ELAEAIAEALGEDRKAVLLRNHGVVVWGKSLEEAFYRAE 174 (184)
T ss_dssp SCEEEE-THST--TCH----HHHHHHHHHHTCTSSEEEETTTEEEEEESSHHHHHHHHH
T ss_pred ccceeeccccc--cch----hhhhhhhhhhcCCceEEeecCCceEEEeCCHHHHHHHHH
Confidence 46999988763 344 56788999998 88999999999522 34455555443
No 51
>PRK06661 hypothetical protein; Provisional
Probab=40.99 E-value=44 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.024 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 56 KTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 56 ~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
+.++.+.+++.+...+.|.|||+=. +.+++++..+..
T Consensus 138 ~~~~~~a~~l~~~~avll~nHG~v~~G~sl~eA~~~~~~ 176 (231)
T PRK06661 138 KQSSRLVNDLKQNYVMLLRNHGAITCGKTIHEAMFYTYH 176 (231)
T ss_pred hHHHHHHHHhCCCCEEEECCCCCeEecCCHHHHHHHHHH
Confidence 5678889999999999999999633 344455444443
No 52
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=40.27 E-value=14 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=22.0
Q ss_pred EechhhhHHhhcCCcCCCceEEeCCcceee
Q 023033 255 NIGDHMEVILSNHFYLYLHSIYSLNVCVCL 284 (288)
Q Consensus 255 n~Gd~l~~~~TnG~~s~~HRV~~~~~~~~~ 284 (288)
.+|-+|.. ++.|..-++|||++..++..+
T Consensus 41 qVG~il~~-l~~~s~lPWhRVvns~G~isl 69 (103)
T COG3695 41 QVGRILKH-LPEGSDLPWHRVVNSDGRISL 69 (103)
T ss_pred HHHHHHhh-CCCCCCCChhheecCCCcccC
Confidence 46778888 888855579999998877543
No 53
>PRK06755 hypothetical protein; Validated
Probab=39.79 E-value=38 Score=28.67 Aligned_cols=50 Identities=22% Similarity=0.078 Sum_probs=33.0
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||+|++..-. ..+.++.+.+++++...+.|.|||+-. ..+++++..+..
T Consensus 136 ~IPiv~~~~~~------~~~la~~~~~~~~~~~avLl~~HGv~~~G~~l~eA~~~~E~ 187 (209)
T PRK06755 136 TIPIVEDEKKF------ADLLENNVPNFIEGGGVVLVHNYGMIVWGKTPEEAKKWLEG 187 (209)
T ss_pred EEEEEeCCCch------hHHHHHHHHhhccCCCEEEEcCCCeEEEcCCHHHHHHHHHH
Confidence 58999875421 135666677777788899999999633 344555554443
No 54
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=38.72 E-value=46 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=18.8
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-+...++++++++++.|.+++.+
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~ 30 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSK 30 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 56666444334667777888888777664
No 55
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=36.31 E-value=38 Score=21.98 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=17.3
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-....+.++++++++++.+++.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~ 29 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVE 29 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 55555544433566777777777777665
No 56
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=35.45 E-value=34 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHhcceEEEEeCCCC
Q 023033 59 QAIGNACLKWGFFEVINHGVP 79 (288)
Q Consensus 59 ~~l~~A~~~~GFf~l~nhgi~ 79 (288)
+.|...|.+.||.|+.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 458889999999999877654
No 57
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=35.43 E-value=56 Score=21.31 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=17.1
Q ss_pred ceeecCCC-CCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSML-TSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l-~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-+ ...++++++++++.|.+++.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~ 30 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAE 30 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 55555544 223566677777777666654
No 58
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=34.72 E-value=2e+02 Score=24.03 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=4.8
Q ss_pred CCceEEeC
Q 023033 271 YLHSIYSL 278 (288)
Q Consensus 271 ~~HRV~~~ 278 (288)
++|+|..-
T Consensus 160 SlH~VtPV 167 (229)
T COG3128 160 SLHEVTPV 167 (229)
T ss_pred cceecccc
Confidence 56776543
No 59
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=34.68 E-value=67 Score=26.66 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHH---hcceEEEEeCCCCh--HHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACL---KWGFFEVINHGVPN--TLRDEMIRASE 91 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~---~~GFf~l~nhgi~~--~~~~~~~~~~~ 91 (288)
.||+++. ..+++ ++++.+.++++ +...+.|.|||+=. +.+++++..++
T Consensus 126 ~vp~~~~---~~gs~----ela~~~~~~l~~~~~~~avll~nHGv~~~G~~~~~A~~~~e 178 (193)
T TIGR03328 126 TIPIFEN---TQDIA----RLADSVAPYLEAYPDVPGVLIRGHGLYAWGRDWEEAKRHLE 178 (193)
T ss_pred EEeeecC---CCChH----HHHHHHHHHHhcCCCCCEEEEcCCcceEEcCCHHHHHHHHH
Confidence 4888864 23333 67888888886 47899999999632 34455554443
No 60
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=34.14 E-value=51 Score=21.77 Aligned_cols=36 Identities=36% Similarity=0.539 Sum_probs=23.8
Q ss_pred ccCCCCccccCceE---EEE-------cCCCCCeEEee-CCeeEeec
Q 023033 211 VMGLPPHSDHGLLT---ILM-------QNDHVGLHVRH-DGKWIPVN 246 (288)
Q Consensus 211 ~~~~~~HtD~~~lT---lL~-------q~~~~GLqv~~-~g~W~~V~ 246 (288)
..|.-|-+|...+| +|- |--..-|||+. +|.|.+|.
T Consensus 15 snG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 15 SNGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CCccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhcc
Confidence 34666777755544 441 22246799998 99999885
No 61
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=33.10 E-value=46 Score=27.96 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
..||++++.....++. +.++.+.+++.+.-.+.|.|||+=. +.+++++..+..
T Consensus 121 ~~ip~~~~~~~~~~~~----~la~~~~~~l~~~~~vll~nHG~~~~G~~~~~A~~~~~~ 175 (209)
T cd00398 121 GDIPCTPYMTPETGED----EIGTQRALGFPNSKAVLLRNHGLFAWGPTLDEAFHLAVV 175 (209)
T ss_pred CCeeecCCcCCCccHH----HHHHHHhcCCCcCCEEEEcCCCCeEecCCHHHHHHHHHH
Confidence 3689888876421222 5566677777788899999999632 344455544433
No 62
>PRK05834 hypothetical protein; Provisional
Probab=32.96 E-value=61 Score=27.06 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcc--eEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 56 KTIQAIGNACLKWG--FFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 56 ~~~~~l~~A~~~~G--Ff~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
..++.+.+++.+.. .+.|.|||+=. +.+++++..+..
T Consensus 136 ~la~~v~~~l~~~~~~avLL~nHGvv~~G~~l~eA~~~~e~ 176 (194)
T PRK05834 136 RADTEILRYLQEKNKNFVVIKGYGVYAYARDIYELAKKIAI 176 (194)
T ss_pred hHHHHHHHHHhhcCCCEEEEcCCcceEECCCHHHHHHHHHH
Confidence 34667888888755 99999999532 345555554444
No 63
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=32.47 E-value=68 Score=20.81 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=18.0
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-....++++++++++.|.+++.+
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~ 30 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVE 30 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 55655544333666777777777776654
No 64
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=32.40 E-value=73 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHhcceEEEEeCCCChHHHHHHHHHHH
Q 023033 60 AIGNACLKWGFFEVINHGVPNTLRDEMIRASE 91 (288)
Q Consensus 60 ~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~ 91 (288)
...+++++.|||.+.| +|..++.++.+...
T Consensus 16 ~Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 16 TALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 3567889999999987 89999888777655
No 65
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=32.02 E-value=78 Score=26.26 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCC-----eEEee--CCeeEeecCCCCcEEEEechh
Q 023033 222 LLTILMQNDHVG-----LHVRH--DGKWIPVNPPPGSFVVNIGDH 259 (288)
Q Consensus 222 ~lTlL~q~~~~G-----Lqv~~--~g~W~~V~~~~~~~vVn~Gd~ 259 (288)
-=.+|+|+. .| ..+.. .|+-+-|||-=++.+||+||-
T Consensus 93 ~g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 93 EGLILLQKE-EGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SEEEEEE-T-TS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred EEEEEEEec-CCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 335667764 34 22222 788889998889999999975
No 66
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=31.55 E-value=75 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCC
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGV 78 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi 78 (288)
.||++.+.... ++ ++++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~g--s~----~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG--ST----KLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC--hH----HHHHHHHHHhhhCCEEehhcCCC
Confidence 36666665432 33 57778888888889999999996
No 67
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=31.48 E-value=70 Score=27.12 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHH--HhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNAC--LKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~--~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
.||++.+... ++. +.++++.+++ .+...+.|.|||+-. +.+++++..+..
T Consensus 130 ~ip~~~y~~~--g~~----ela~~i~~~l~~~~~~~vll~nHG~~~~G~~~~eA~~~~e~ 183 (221)
T PRK06557 130 PIPVGPFALI--GDE----AIGKGIVETLKGGRSPAVLMQNHGVFTIGKDAEDAVKAAVM 183 (221)
T ss_pred CeeccCCcCC--CcH----HHHHHHHHHhCcCCCCEEEECCCCceEEcCCHHHHHHHHHH
Confidence 5777666533 233 6677888888 677889999999633 345555554443
No 68
>PRK06357 hypothetical protein; Provisional
Probab=31.35 E-value=1e+02 Score=26.11 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhc------ceEEEEeCCCCh--HHHHHHHHHHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKW------GFFEVINHGVPN--TLRDEMIRASE 91 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~------GFf~l~nhgi~~--~~~~~~~~~~~ 91 (288)
.+|++.+... +++ +.++.+.+++++. ..+.|.|||+=. ..+++++..+.
T Consensus 130 ~i~~~p~~~~--gs~----ela~~v~~~l~~~~~~~~~~~vLl~nHGvv~~G~~l~eA~~~~e 186 (216)
T PRK06357 130 KIPTLPFAPA--TSP----ELAEIVRKHLIELGDKAVPSAFLLNSHGIVITDTSLHKAYDILE 186 (216)
T ss_pred CcceecccCC--CcH----HHHHHHHHHHhhcCcccCCCEEEECCCCCeEecCCHHHHHHHHH
Confidence 4677766543 233 6777787877764 589999999632 34444444433
No 69
>PLN02433 uroporphyrinogen decarboxylase
Probab=30.89 E-value=1.1e+02 Score=28.01 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHHHHHhcceEEEEeCCCCh----HHHHHHHHHHHHH
Q 023033 48 SGSPEQRYKTIQAIGNACLKWGFFEVINHGVPN----TLRDEMIRASESF 93 (288)
Q Consensus 48 ~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~----~~~~~~~~~~~~f 93 (288)
.+++++-.+.++++.+++..-||+.-.+|||+. +-++.+.++++++
T Consensus 288 ~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 288 FGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 567776677777777777677877777898764 6778888888774
No 70
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=30.00 E-value=71 Score=20.31 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCC
Q 023033 56 KTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLS 97 (288)
Q Consensus 56 ~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP 97 (288)
+.+..|...+...||......|+-.....++...-+..+.|+
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 356788899999999844445655566666666666666664
No 71
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=29.34 E-value=90 Score=20.78 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcc--eEEEEe------CCCChHHHHHHHHHHHH
Q 023033 56 KTIQAIGNACLKWG--FFEVIN------HGVPNTLRDEMIRASES 92 (288)
Q Consensus 56 ~~~~~l~~A~~~~G--Ff~l~n------hgi~~~~~~~~~~~~~~ 92 (288)
+..+.|.+.++++| .+.++. +||+.+.++.+++..++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 56677778888776 777654 57888888888876554
No 72
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=29.25 E-value=1.7e+02 Score=22.94 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHH
Q 023033 54 RYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASE 91 (288)
Q Consensus 54 r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 91 (288)
+...++++.+.++++.++++.+ +|++...+.++....+
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 4567888899999888777776 4788877766665544
No 73
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=29.05 E-value=1.3e+02 Score=26.46 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=30.5
Q ss_pred CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCC
Q 023033 34 EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHG 77 (288)
Q Consensus 34 ~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhg 77 (288)
|.++||||.+|-...-.++.-.++.++|+++-.+ | +.+...|
T Consensus 129 PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSG 170 (268)
T COG3384 129 PDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASG 170 (268)
T ss_pred CccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecC
Confidence 6789999999987654565666788888888777 6 4444444
No 74
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=28.56 E-value=2.2e+02 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHhcce--EEEEe-CCCChHHHHHHHHHHHHHhc
Q 023033 52 EQRYKTIQAIGNACLKWGF--FEVIN-HGVPNTLRDEMIRASESFFD 95 (288)
Q Consensus 52 ~~r~~~~~~l~~A~~~~GF--f~l~n-hgi~~~~~~~~~~~~~~fF~ 95 (288)
+.-......+.+++..+|| |+++| ||=....+..+.+..+.-+.
T Consensus 86 ~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 86 ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 3455778889999999999 66655 88777666666665555443
No 75
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=27.33 E-value=1.7e+02 Score=27.59 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=42.4
Q ss_pred eecCCCC-CCChhHHHHHHHHHHHH------------HHhcceEEEEeCCCChHHHHHHHHHHHHHhc
Q 023033 41 IDFSMLT-SGSPEQRYKTIQAIGNA------------CLKWGFFEVINHGVPNTLRDEMIRASESFFD 95 (288)
Q Consensus 41 IDls~l~-~~d~~~r~~~~~~l~~A------------~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~ 95 (288)
+|++.+. +.+-+.-.++-++|..+ |.+-|.|.+.-....+++++-+++..+.|-+
T Consensus 393 vDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 393 VDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred EEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 6888765 45555555667778777 8999999999999999988877777777754
No 76
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=27.04 E-value=82 Score=26.51 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-hcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 56 KTIQAIGNACL-KWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 56 ~~~~~l~~A~~-~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
++++.+.++++ +...+.|.|||+=. ..+++++..++.
T Consensus 149 eLa~~v~~~l~~~~~avLl~nHG~v~~G~~l~~A~~~~E~ 188 (208)
T PRK06754 149 TLAEEFAKHIQGDSGAVLIRNHGITVWGRDAFEAKKHLEA 188 (208)
T ss_pred HHHHHHHHHhccCCcEEEECCCceEEEeCCHHHHHHHHHH
Confidence 78889999998 88899999999622 344455554443
No 77
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=27.04 E-value=90 Score=20.50 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=17.5
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHh
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLK 67 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~ 67 (288)
|+|.+.-....+.++++++++.|.+++.+
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~ 30 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISA 30 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 55555433333666777777777777664
No 78
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=26.97 E-value=1.1e+02 Score=26.79 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=36.6
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcC
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDL 96 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~l 96 (288)
+++.=+||+... ++ +..++|.+++.++|+..+.|-.++. ++..+.++.|-.+
T Consensus 14 aev~g~dl~~~l--~~----~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 14 AQISGIDLTRPL--SD----NQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred eEEeCcccCCcC--CH----HHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 455557776532 22 5678899999999999999988775 4456666666543
No 79
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=26.89 E-value=4.6e+02 Score=23.69 Aligned_cols=15 Identities=7% Similarity=0.333 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHHH
Q 023033 78 VPNTLRDEMIRASES 92 (288)
Q Consensus 78 i~~~~~~~~~~~~~~ 92 (288)
++++.++.+.+.++.
T Consensus 63 Ls~~Ecd~Li~la~~ 77 (310)
T PLN00052 63 LSDAECDHLVKLAKK 77 (310)
T ss_pred CCHHHHHHHHHhccc
Confidence 678888888887765
No 80
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=26.45 E-value=3.5e+02 Score=21.95 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=37.1
Q ss_pred ccCCCCcccc----CceEEEEcC----CCCCeEEeeC-----CeeEeecCCCCcEEEEechhhhH
Q 023033 211 VMGLPPHSDH----GLLTILMQN----DHVGLHVRHD-----GKWIPVNPPPGSFVVNIGDHMEV 262 (288)
Q Consensus 211 ~~~~~~HtD~----~~lTlL~q~----~~~GLqv~~~-----g~W~~V~~~~~~~vVn~Gd~l~~ 262 (288)
......|+|. ...|++..- ..+|+-+... +. +.|.+.+|++++..|-.+..
T Consensus 84 nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g-~~~~~~~GtVl~~~~~~~~H 147 (171)
T PF12851_consen 84 NRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILG-VAFAYQPGTVLIFCAKRELH 147 (171)
T ss_pred ecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCC-EEEecCCCcEEEEcccceee
Confidence 3457889999 777887751 3467666654 33 67889999999999986655
No 81
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=25.76 E-value=1.8e+02 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcceEEEE-eCCCChHHHHHHHHHHH
Q 023033 53 QRYKTIQAIGNACLKWGFFEVI-NHGVPNTLRDEMIRASE 91 (288)
Q Consensus 53 ~r~~~~~~l~~A~~~~GFf~l~-nhgi~~~~~~~~~~~~~ 91 (288)
.+.+.+++|.+.+.++-.++|. .+|++...++++.+..+
T Consensus 2 ~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 2 LKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 3567889999999998876666 47999988887776554
No 82
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=25.55 E-value=2.6e+02 Score=22.08 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHH
Q 023033 53 QRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASE 91 (288)
Q Consensus 53 ~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 91 (288)
.+...++++.+.+++.-++++.+ .|++...+.++....+
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 43 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELR 43 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 44567788888888887766665 4788877776666555
No 83
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=24.47 E-value=1.4e+02 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHH
Q 023033 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESF 93 (288)
Q Consensus 36 ~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~f 93 (288)
..+|.+++..+.+.+ ....++..++.++|+..+.+-....+. +...++.|
T Consensus 17 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~g~~~~~~~~~~~~~---~~~~~~~~ 66 (262)
T cd00250 17 KALPVLSFLEVLELD-----SPLGKLLLASAGVGFAELEGAPLDPAA---LLGLAERI 66 (262)
T ss_pred cCCCcccHHHHhcCH-----HHHHHHHHHHHHhcEEEEeCCCCCHHH---HHHHHHHh
Confidence 468999998776533 467789999999999999876555433 34444444
No 84
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=24.25 E-value=2e+02 Score=23.49 Aligned_cols=39 Identities=5% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHH
Q 023033 53 QRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASE 91 (288)
Q Consensus 53 ~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 91 (288)
.+.+.+++|.+.+.++-.+++.+ .|++...++++....+
T Consensus 2 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr 41 (175)
T cd05795 2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLR 41 (175)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhh
Confidence 34578899999999998777765 6899988877766555
No 85
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=24.09 E-value=84 Score=19.93 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Q 023033 149 GFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAM 187 (288)
Q Consensus 149 ~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~ 187 (288)
.-...+++++.........-...||..||++.......|
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccCH
Confidence 345678888888888888889999999999987555443
No 86
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=23.77 E-value=2.8e+02 Score=19.86 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHhcceE-EEEeCCCChHHHHHHHHHHHHH
Q 023033 52 EQRYKTIQAIGNACLKWGFF-EVINHGVPNTLRDEMIRASESF 93 (288)
Q Consensus 52 ~~r~~~~~~l~~A~~~~GFf-~l~nhgi~~~~~~~~~~~~~~f 93 (288)
+.+...++++.+.+.++=.+ .+..+|++...+.++....+..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 35667889999999988444 4455799998887777666553
No 87
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=23.14 E-value=1.8e+02 Score=26.52 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHHHHHHhcceEEEEeCCCCh----HHHHHHHHHHHHH
Q 023033 49 GSPEQRYKTIQAIGNACLKWGFFEVINHGVPN----TLRDEMIRASESF 93 (288)
Q Consensus 49 ~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~----~~~~~~~~~~~~f 93 (288)
+++++-.+.++++.+.+..-||..-.+|||+. +-++.+.++++++
T Consensus 296 gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 296 APPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 56766667777777777777877777898764 6777888877763
No 88
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.93 E-value=1.5e+02 Score=22.56 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=31.6
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHH
Q 023033 39 PIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASE 91 (288)
Q Consensus 39 PvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 91 (288)
=+|||+. | +.+....+.|.++|.=.+.+ .|.+++.++.+.++++
T Consensus 70 VvIDfT~-----p----~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 70 VVIDFTN-----P----DAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp EEEEES------H----HHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred EEEEcCC-----h----HHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 3678873 4 66777788888889999986 5898887777766554
No 89
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=22.36 E-value=3.2e+02 Score=21.99 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHHH
Q 023033 53 QRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASES 92 (288)
Q Consensus 53 ~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~~ 92 (288)
.+.+.++++.+.++++-++++.+ .|++...+.++....+.
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 34566777777777775555554 46777666665555443
No 90
>PRK06208 hypothetical protein; Provisional
Probab=22.19 E-value=1.6e+02 Score=26.05 Aligned_cols=37 Identities=16% Similarity=-0.031 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcceEEEEeCCCCh--HHHHHHHHHHHH
Q 023033 56 KTIQAIGNACLKWGFFEVINHGVPN--TLRDEMIRASES 92 (288)
Q Consensus 56 ~~~~~l~~A~~~~GFf~l~nhgi~~--~~~~~~~~~~~~ 92 (288)
++++.+.+++++...+.|.|||+=. +.+++++..+..
T Consensus 178 ela~~va~~l~~~~avLL~NHGvv~~G~tl~eA~~~~e~ 216 (274)
T PRK06208 178 SEGRRIAAALGTHKAVILQNHGLLTVGPSVDAAAWWFIA 216 (274)
T ss_pred HHHHHHHHHhccCCEEEECCCCceEeeCCHHHHHHHHHH
Confidence 6788899999999999999999632 344444444433
No 91
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.07 E-value=1.4e+02 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcceEEEEeC-CCChHHHHHHHHHHHH
Q 023033 54 RYKTIQAIGNACLKWGFFEVINH-GVPNTLRDEMIRASES 92 (288)
Q Consensus 54 r~~~~~~l~~A~~~~GFf~l~nh-gi~~~~~~~~~~~~~~ 92 (288)
..++.+.+.+||.+.|| +|.-. ||+.+-...+.+.+.+
T Consensus 162 ~leE~~avA~aca~~g~-~lEPTGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGF-YLEPTGGIDLDNFEEIVQIALD 200 (236)
T ss_pred cHHHHHHHHHHHHHcCC-ccCCCCCccHHhHHHHHHHHHH
Confidence 45788999999999997 56554 6988887777776543
No 92
>PF01198 Ribosomal_L31e: Ribosomal protein L31e; InterPro: IPR000054 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial large subunit ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 87 to 128 amino-acid residues. This family consists of: Yeast L34 Archaeal L31 [] Plants L31 Mammalian L31 [] ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3G6E_X 3I56_X 1YIT_X 1NJI_Y 3CC4_X 1VQM_X 1KC8_Y 1VQ9_X 1VQN_X 1M1K_Y ....
Probab=21.45 E-value=66 Score=22.96 Aligned_cols=17 Identities=18% Similarity=-0.017 Sum_probs=10.1
Q ss_pred hHHhhcCCcCCCceEEe
Q 023033 261 EVILSNHFYLYLHSIYS 277 (288)
Q Consensus 261 ~~~~TnG~~s~~HRV~~ 277 (288)
+.||++|.+.+++||.+
T Consensus 52 ~~IWsrGi~~pP~rIRV 68 (83)
T PF01198_consen 52 KAIWSRGIRKPPRRIRV 68 (83)
T ss_dssp HHHHTTTSSS--SEEEE
T ss_pred HHHHhcccCCCCceEEE
Confidence 34588887777777754
No 93
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.05 E-value=75 Score=19.09 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.6
Q ss_pred cccCceEEEEcCC
Q 023033 218 SDHGLLTILMQND 230 (288)
Q Consensus 218 tD~~~lTlL~q~~ 230 (288)
..+|++||..||+
T Consensus 13 i~yGsV~iiiqdG 25 (38)
T PF10055_consen 13 IRYGSVTIIIQDG 25 (38)
T ss_pred CCcceEEEEEECC
Confidence 3579999999975
No 94
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=20.97 E-value=2.7e+02 Score=25.38 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHH
Q 023033 52 EQRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASE 91 (288)
Q Consensus 52 ~~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 91 (288)
+.+.+.+++|.+.+.++..+++.+ +|++...++++.+..+
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr 46 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLR 46 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 345667788888888887777665 5787777776666555
No 95
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.90 E-value=2.7e+02 Score=24.55 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=34.9
Q ss_pred eeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHHH
Q 023033 40 IIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASES 92 (288)
Q Consensus 40 vIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~~ 92 (288)
+|||+. | +...++.+-|.+.|.-.+++ .|.+++.++.+.++++.
T Consensus 73 ~IDFT~-----P----~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 73 LIDFTT-----P----EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EEECCC-----c----hhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 577774 4 56677888899999888877 59999998888887776
No 96
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=20.87 E-value=3.6e+02 Score=22.07 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHhcceEEEEe-CCCChHHHHHHHHHHHH
Q 023033 52 EQRYKTIQAIGNACLKWGFFEVIN-HGVPNTLRDEMIRASES 92 (288)
Q Consensus 52 ~~r~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~~ 92 (288)
+.+.+..+.+.+.+++...|.+.+ +|++...+.++....++
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 356678889999999886666554 79999888777776664
No 97
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=20.69 E-value=1.9e+02 Score=24.98 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.9
Q ss_pred CCc-eeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHH
Q 023033 37 TIP-IIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTL 82 (288)
Q Consensus 37 ~iP-vIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~ 82 (288)
..| |||++.+...++ .....|.+.|++.|+.-+--.|-+.+.
T Consensus 46 ~aPvVldl~~l~~~~~----~dl~~L~~~l~~~gl~~vGv~g~~~~~ 88 (235)
T PRK04516 46 VVPFVLDVQEFDYPES----LDLAALVSLFSRHGMQILGLKHSNERW 88 (235)
T ss_pred CCcEEEEchhhCCccc----ccHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 356 789999853221 235669999999999999877765543
No 98
>PRK15331 chaperone protein SicA; Provisional
Probab=20.65 E-value=1.1e+02 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcC
Q 023033 53 QRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDL 96 (288)
Q Consensus 53 ~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~l 96 (288)
+-.+.++.|.+|+.+ |-=.-.-|||+++.++.++..+..||..
T Consensus 8 ~~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 8 SEERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 344678888899887 5333335899999999999999999953
No 99
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.56 E-value=50 Score=21.26 Aligned_cols=21 Identities=33% Similarity=0.885 Sum_probs=17.6
Q ss_pred CCeeEeecCCCCcEEEEechhhhH
Q 023033 239 DGKWIPVNPPPGSFVVNIGDHMEV 262 (288)
Q Consensus 239 ~g~W~~V~~~~~~~vVn~Gd~l~~ 262 (288)
+|+++.|+..++ +.+|+..+.
T Consensus 14 dGeF~~ik~~~~---~~vG~eI~~ 34 (56)
T PF12791_consen 14 DGEFIKIKRKPG---MEVGQEIEF 34 (56)
T ss_pred CCcEEEEeCCCC---CcccCEEEE
Confidence 799999998888 788887666
No 100
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=20.35 E-value=2.3e+02 Score=20.95 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHHHHHHhcCCHH
Q 023033 37 TIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDE 99 (288)
Q Consensus 37 ~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lP~e 99 (288)
.+--||++.+..-|. .--.....+.+-|+..|. .+.-+|+|+.+. .--+.|+++..
T Consensus 40 ~~~~idLs~v~rvDS-aglALL~~~~~~~k~~g~-~~~L~~~p~~L~-----tLa~Ly~l~~~ 95 (99)
T COG3113 40 DTVRIDLSGVSRVDS-AGLALLLHLIRLAKKQGN-AVTLTGVPEQLR-----TLAELYNLSDW 95 (99)
T ss_pred CeEEEehhhcceech-HHHHHHHHHHHHHHHcCC-eeEEecCcHHHH-----HHHHHhCcHhh
Confidence 466689988765444 233566778888898888 777899998653 22345666543
No 101
>PRK10628 LigB family dioxygenase; Provisional
Probab=20.26 E-value=2e+02 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=25.9
Q ss_pred CCCCCceeecCCCCCCChhHHHHHHHHHHHHHHhcceEEEE
Q 023033 34 EAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVI 74 (288)
Q Consensus 34 ~~~~iPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~ 74 (288)
|.++||||-+|--.+.|++ ..-.+-+..+.+++-|...|-
T Consensus 107 P~adIPVvqlSl~~~~~~~-~h~~lG~aL~~LR~~gvLIig 146 (246)
T PRK10628 107 PDADIPMVQLSIDSTKPAA-WHFEMGRKLAALRDEGIMLVA 146 (246)
T ss_pred CCCCCCeEEeecCCCCCHH-HHHHHHHHHHhhccCCEEEEe
Confidence 6789999999954445653 222334445666788987553
No 102
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=20.08 E-value=1.6e+02 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcceEEEEeCCCChHHHHHHHHH
Q 023033 56 KTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRA 89 (288)
Q Consensus 56 ~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~ 89 (288)
++++.|.++++..||..=.-||.-.+..++++..
T Consensus 16 ~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 16 DVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 7889999999999997766677666555555543
No 103
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=20.07 E-value=5.8e+02 Score=23.34 Aligned_cols=119 Identities=13% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCHH--HHHhhhcCCCCCc-ee-ccccccc-cCCccccccccccccccCCCCCCCC--------------
Q 023033 86 MIRASESFFDLSDE--QKREYAGKKLFDP-IR-WGTSFNV-NVDKTLFWRDYLKIHVHPQFNAPQN-------------- 146 (288)
Q Consensus 86 ~~~~~~~fF~lP~e--~K~~~~~~~~~~~-~g-y~~~~~~-~~~~~~d~~e~~~~~~~~~~~wP~~-------------- 146 (288)
+.-+..+++++|.. +-....+...+.. +. || ++.. .-++..|-.+++.+...|...||+.
T Consensus 130 lv~alarly~l~~~~~els~iAR~GSGSACRSl~G-G~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t 208 (395)
T KOG2833|consen 130 LVLALARLYGLDDSPEELSRIARQGSGSACRSLYG-GFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKT 208 (395)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHhccCchhhhhhhc-ceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccc
Confidence 33445678877554 5555544333221 11 11 1111 1122334456666666677779852
Q ss_pred --CcchHHHHHH---HHHHHHHH-HHHHHHHHHHHc-CCCHHHHHHhccccCCCcceeEeeccCCCC
Q 023033 147 --PLGFSETIQE---YCKRVREL-ANELLKGIMESL-GLEESYIQKAMDLETDSHQLLVVNLYPPCP 206 (288)
Q Consensus 147 --~~~f~~~~~~---y~~~~~~l-a~~ll~~la~~L-gl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~ 206 (288)
-.+.+..++. |..++.++ -.+|. .+.++. .-+-+.|.+....++...+...|--|||+-
T Consensus 209 ~ST~GM~~sveTS~L~qhRi~~vVP~Ri~-~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~ 274 (395)
T KOG2833|consen 209 GSTEGMRRSVETSQLLQHRIESVVPQRIQ-QMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIF 274 (395)
T ss_pred cccHHHHHHHHHhHHHHHHHHhhhHHHHH-HHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeE
Confidence 1345554432 44445553 33333 333333 334456666543232445667888899874
Done!