BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023034
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
E+ ++ L V G I+D CG G F R + G S V+ LD SE L +
Sbjct: 31 EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA------R 83
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
+ P RAD+ +L S D ++ A+H
Sbjct: 84 AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALH 118
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G +++A CG G + I AK+ + + ++D S L++ E E N K N ++A
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE--NTEKNGIK-NVKFLQA 94
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQV 274
+I LPF SS D + + SP + +V
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKV 131
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QESN 226
L+ Y K G ++D +CG G FS + G VV +D SE+ +++ E+ + +ESN
Sbjct: 31 LLXKYXKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRESN 86
Query: 227 FPKENFLLVRADISRLPFASSSIDAV 252
+ D +L F + D V
Sbjct: 87 VE-----FIVGDARKLSFEDKTFDYV 107
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 177 LGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 234
L GN ++D + G G + FA VVA D +E++LK F++ + +
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEY 89
Query: 235 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQV 274
V+ D + PF V A H + +P++ V ++V
Sbjct: 90 VQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRV 129
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
+ +FVW + E + L P G I+D CG+G + A+SG + V+ D +
Sbjct: 38 KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGV 270
+++ + N+P +F + A R+ +DAV + A +H P +
Sbjct: 89 ATXIEKARQ------NYPHLHFDVADARNFRV---DKPLDAVFSNAXLHWVKEPEAAIAS 139
Query: 271 FFQ 273
Q
Sbjct: 140 IHQ 142
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK+G V+A+D SE +L Q + ++ N ++ +L++ I
Sbjct: 49 VLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIRL--NKLEDTIVLIKGKIE 104
Query: 241 RLPFASSSIDAV 252
+ +D +
Sbjct: 105 EVSLPVEKVDVI 116
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG G ++ FA + LD S+ +K +P+ F + A
Sbjct: 89 VLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYPQVTFCV--ASSH 140
Query: 241 RLPFASSSIDAV 252
RLPF+ +S DA+
Sbjct: 141 RLPFSDTSXDAI 152
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
N++D C G FS A G + +V +D+ + + C ++ +F E
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAE 117
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK+G V+ +D SE +L Q + ++ N ++ L++ I
Sbjct: 68 VLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRL--NKLEDTITLIKGKIE 123
Query: 241 RLPFASSSIDAV 252
+ +D +
Sbjct: 124 EVHLPVEKVDVI 135
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG G + +++G + V +D SE +++ E P +F ++ D+S
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQKGKE----RGEGPDLSF--IKGDLS 108
Query: 241 RLPFASSSIDAVHAGAAIHCWSSP 264
LPF + +A+ A ++ P
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEP 132
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235
+ G ID G G S AK FS + ALD+S++ + + + ++N + +V
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNI-ADANL-NDRIQIV 98
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVGVFFQV 274
+ D+ +P + D + + ++ W +T +++
Sbjct: 99 QGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRI 137
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--SNFPKENFLL 234
G +D GSG+ + FA+ G V+ +D+ + ++ V+++ + L
Sbjct: 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137
Query: 235 VRADISRLPFASSS-IDAVHAGAA 257
V D R+ +A + DA+H GAA
Sbjct: 138 VVGD-GRMGYAEEAPYDAIHVGAA 160
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 167 ELMKGYLK---PVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
EL+K L+ P G ++D CG G F + + G+ S + +D +E+M+K C
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIES--IGVDINEDMIKFC 79
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197
+L+ L P G ++D CG+G+ S FA+
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
LK +ID CG G +I K F + +D S L+ E
Sbjct: 25 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71
>pdb|3UFB|A Chain A, Crystal Structure Of A Modification Subunit Of A Putative
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 530
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 139 MPFMSFIYERGWRQNFVWGGFPG----PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
M +S +YE R+ G G P M + P LG +++D +CG+G F
Sbjct: 175 MHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGF--- 231
Query: 195 FAKSGLFSLVVALDYSENMLK--QCYEFVQQESNFPKEN----FLLVRADI 239
LV A ++ E K + E +Q+ S F E +LLV+ ++
Sbjct: 232 --------LVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
LK +ID CG G +I K F + +D S L+ E
Sbjct: 15 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 61
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G+ S AK G V+ +D S ++++ E V+ K L + +
Sbjct: 42 VLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV 99
Query: 241 RLPFASSSI 249
LPF I
Sbjct: 100 HLPFPKVDI 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,778,024
Number of Sequences: 62578
Number of extensions: 302931
Number of successful extensions: 607
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 23
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)