Query 023034
Match_columns 288
No_of_seqs 347 out of 2742
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11088 rrmA 23S rRNA methylt 99.9 1.3E-24 2.7E-29 192.9 15.0 184 71-287 2-193 (272)
2 COG2226 UbiE Methylase involve 99.9 1.9E-22 4.1E-27 173.3 10.4 143 115-284 13-165 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 2.6E-21 5.6E-26 167.4 10.2 141 113-280 7-158 (233)
4 PLN02233 ubiquinone biosynthes 99.8 2.8E-18 6E-23 151.3 12.3 139 118-280 38-187 (261)
5 KOG1540 Ubiquinone biosynthesi 99.7 1.7E-17 3.7E-22 140.8 8.5 139 117-280 64-219 (296)
6 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.7E-17 3.7E-22 140.6 6.2 100 176-281 58-167 (243)
7 PRK05785 hypothetical protein; 99.7 5.1E-17 1.1E-21 140.3 8.3 116 119-268 15-130 (226)
8 TIGR02752 MenG_heptapren 2-hep 99.7 2.2E-16 4.7E-21 136.6 11.3 112 169-283 37-159 (231)
9 PRK10258 biotin biosynthesis p 99.7 3.1E-16 6.8E-21 137.5 12.0 111 167-287 32-152 (251)
10 PLN02244 tocopherol O-methyltr 99.7 6.6E-16 1.4E-20 141.2 14.3 108 167-277 103-225 (340)
11 PLN02396 hexaprenyldihydroxybe 99.6 8.4E-16 1.8E-20 138.7 9.6 100 176-279 130-239 (322)
12 PF08241 Methyltransf_11: Meth 99.6 1.4E-15 3.1E-20 112.3 9.0 80 182-268 1-80 (95)
13 PF13847 Methyltransf_31: Meth 99.6 2.6E-15 5.7E-20 121.6 11.2 97 177-277 3-112 (152)
14 PRK11036 putative S-adenosyl-L 99.6 3.9E-15 8.4E-20 130.9 9.6 109 167-280 35-154 (255)
15 PTZ00098 phosphoethanolamine N 99.6 7.7E-15 1.7E-19 129.6 11.3 113 160-278 35-159 (263)
16 PRK14103 trans-aconitate 2-met 99.6 6.5E-15 1.4E-19 129.5 10.3 100 167-277 19-128 (255)
17 PF12847 Methyltransf_18: Meth 99.6 1.2E-14 2.6E-19 111.2 8.7 96 177-275 1-111 (112)
18 PRK15068 tRNA mo(5)U34 methylt 99.6 3E-14 6.5E-19 129.2 11.6 108 166-277 111-228 (322)
19 TIGR03587 Pse_Me-ase pseudamin 99.6 4.3E-14 9.2E-19 120.1 11.8 93 177-278 43-145 (204)
20 KOG1270 Methyltransferases [Co 99.6 5E-15 1.1E-19 126.6 5.9 97 178-281 90-201 (282)
21 PLN02336 phosphoethanolamine N 99.5 7.8E-14 1.7E-18 133.2 14.2 109 165-278 254-372 (475)
22 TIGR02072 BioC biotin biosynth 99.5 5E-14 1.1E-18 121.9 11.4 103 177-286 34-146 (240)
23 PRK01683 trans-aconitate 2-met 99.5 8.6E-14 1.9E-18 122.5 11.6 101 167-276 21-131 (258)
24 TIGR00452 methyltransferase, p 99.5 8.9E-14 1.9E-18 125.1 11.6 107 167-277 111-227 (314)
25 COG2230 Cfa Cyclopropane fatty 99.5 1.8E-13 4E-18 119.9 12.5 107 166-278 61-179 (283)
26 PRK11207 tellurite resistance 99.5 1.2E-13 2.7E-18 116.8 11.1 90 168-263 21-110 (197)
27 PRK08317 hypothetical protein; 99.5 2.3E-13 5E-18 117.5 12.8 106 167-276 9-125 (241)
28 PRK06202 hypothetical protein; 99.5 2.1E-13 4.6E-18 118.2 11.0 100 174-279 57-170 (232)
29 PF07021 MetW: Methionine bios 99.5 1.5E-13 3.2E-18 113.5 8.1 100 166-278 4-111 (193)
30 PRK00107 gidB 16S rRNA methylt 99.5 9.8E-13 2.1E-17 110.1 13.2 75 178-256 46-120 (187)
31 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.2E-13 1.3E-17 116.4 12.5 98 176-277 55-166 (247)
32 PRK11873 arsM arsenite S-adeno 99.5 4.8E-13 1E-17 118.7 11.7 101 174-277 74-185 (272)
33 PF13649 Methyltransf_25: Meth 99.5 1.1E-13 2.3E-18 104.4 6.3 80 181-264 1-84 (101)
34 PF13489 Methyltransf_23: Meth 99.5 1.7E-13 3.6E-18 111.3 7.7 90 175-279 20-119 (161)
35 TIGR00477 tehB tellurite resis 99.5 4.1E-13 9E-18 113.4 10.4 89 168-263 21-109 (195)
36 PF02353 CMAS: Mycolic acid cy 99.4 5.5E-13 1.2E-17 118.0 10.6 107 166-278 51-169 (273)
37 PLN02490 MPBQ/MSBQ methyltrans 99.4 7.8E-13 1.7E-17 120.0 11.1 95 176-276 112-216 (340)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 7.1E-13 1.5E-17 113.5 10.3 103 170-277 32-145 (223)
39 TIGR02081 metW methionine bios 99.4 9.2E-13 2E-17 111.1 10.4 90 166-268 4-95 (194)
40 TIGR00138 gidB 16S rRNA methyl 99.4 1.3E-12 2.9E-17 108.9 10.9 104 177-286 42-152 (181)
41 COG4106 Tam Trans-aconitate me 99.4 4.8E-13 1E-17 111.3 7.4 93 167-268 20-112 (257)
42 PRK13944 protein-L-isoaspartat 99.4 3.3E-12 7.2E-17 108.7 12.8 108 166-275 61-173 (205)
43 smart00828 PKS_MT Methyltransf 99.4 1.4E-12 3E-17 112.3 10.4 96 179-277 1-106 (224)
44 PF08003 Methyltransf_9: Prote 99.4 9.6E-13 2.1E-17 115.7 9.1 109 166-278 104-222 (315)
45 PLN02585 magnesium protoporphy 99.4 2.9E-12 6.3E-17 115.5 12.4 95 166-265 130-229 (315)
46 PRK00216 ubiE ubiquinone/menaq 99.4 3.9E-12 8.5E-17 110.0 12.8 108 168-277 42-160 (239)
47 PF03848 TehB: Tellurite resis 99.4 4E-12 8.6E-17 106.2 12.0 98 172-276 25-134 (192)
48 PRK08287 cobalt-precorrin-6Y C 99.4 4.2E-12 9.2E-17 106.4 12.0 116 166-286 20-142 (187)
49 PRK13942 protein-L-isoaspartat 99.4 4.6E-12 1E-16 108.3 12.3 106 166-274 65-175 (212)
50 PRK12335 tellurite resistance 99.4 2.5E-12 5.5E-17 115.0 11.1 79 177-262 120-198 (287)
51 PRK00121 trmB tRNA (guanine-N( 99.4 2.9E-12 6.4E-17 108.8 10.7 107 177-286 40-167 (202)
52 KOG4300 Predicted methyltransf 99.4 1.6E-12 3.4E-17 107.5 8.5 108 169-280 68-187 (252)
53 TIGR03840 TMPT_Se_Te thiopurin 99.4 5.1E-12 1.1E-16 108.0 12.1 110 166-277 23-154 (213)
54 TIGR00740 methyltransferase, p 99.4 3.1E-12 6.7E-17 111.4 10.6 97 177-277 53-163 (239)
55 TIGR02021 BchM-ChlM magnesium 99.4 5E-12 1.1E-16 108.6 11.6 89 168-263 44-134 (219)
56 PF08242 Methyltransf_12: Meth 99.4 7.3E-14 1.6E-18 104.7 -0.0 84 182-268 1-86 (99)
57 TIGR02469 CbiT precorrin-6Y C5 99.4 8.7E-12 1.9E-16 96.7 11.6 107 167-276 9-123 (124)
58 TIGR00080 pimt protein-L-isoas 99.4 8E-12 1.7E-16 107.1 12.0 107 166-275 66-177 (215)
59 PRK07580 Mg-protoporphyrin IX 99.3 9E-12 1.9E-16 107.5 11.8 83 176-265 62-144 (230)
60 PRK06922 hypothetical protein; 99.3 5.3E-12 1.2E-16 121.7 10.9 82 177-262 418-501 (677)
61 TIGR00537 hemK_rel_arch HemK-r 99.3 1.2E-11 2.6E-16 102.9 11.5 88 168-263 10-97 (179)
62 PRK11705 cyclopropane fatty ac 99.3 8.6E-12 1.9E-16 115.7 10.1 103 166-278 156-270 (383)
63 COG2242 CobL Precorrin-6B meth 99.3 4.1E-11 9E-16 98.5 12.1 120 164-287 21-147 (187)
64 PF05401 NodS: Nodulation prot 99.3 1.5E-11 3.3E-16 101.8 9.5 99 172-278 38-149 (201)
65 PRK05134 bifunctional 3-demeth 99.3 2.1E-11 4.6E-16 105.6 10.8 106 167-278 38-154 (233)
66 PRK00312 pcm protein-L-isoaspa 99.3 5E-11 1.1E-15 101.9 12.6 106 166-276 67-176 (212)
67 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.5E-11 3.2E-16 103.8 8.7 107 177-286 16-143 (194)
68 PLN02336 phosphoethanolamine N 99.3 2.2E-11 4.7E-16 116.4 10.9 102 167-275 27-142 (475)
69 COG2518 Pcm Protein-L-isoaspar 99.3 7.1E-11 1.5E-15 99.1 11.8 106 165-275 60-169 (209)
70 KOG1541 Predicted protein carb 99.3 1.5E-11 3.3E-16 102.6 7.7 87 167-263 38-127 (270)
71 PRK14968 putative methyltransf 99.3 7.8E-11 1.7E-15 98.3 12.1 97 159-259 5-101 (188)
72 smart00138 MeTrc Methyltransfe 99.3 2.7E-11 6E-16 106.9 9.5 100 176-275 98-242 (264)
73 PRK00377 cbiT cobalt-precorrin 99.2 1.1E-10 2.5E-15 98.7 12.8 115 167-286 30-156 (198)
74 TIGR01983 UbiG ubiquinone bios 99.2 5.7E-11 1.2E-15 102.1 11.2 97 177-278 45-152 (224)
75 PF01135 PCMT: Protein-L-isoas 99.2 3.9E-11 8.5E-16 102.0 9.8 107 166-275 61-172 (209)
76 PRK13255 thiopurine S-methyltr 99.2 7.3E-11 1.6E-15 101.3 11.4 90 173-264 33-132 (218)
77 PLN03075 nicotianamine synthas 99.2 9.8E-11 2.1E-15 103.9 11.9 97 177-275 123-233 (296)
78 TIGR00406 prmA ribosomal prote 99.2 7.4E-11 1.6E-15 105.6 10.8 106 177-287 159-271 (288)
79 KOG1271 Methyltransferases [Ge 99.2 1.6E-10 3.5E-15 93.9 11.1 108 178-287 68-192 (227)
80 PF05175 MTS: Methyltransferas 99.2 2.2E-10 4.7E-15 94.6 11.9 92 167-262 21-112 (170)
81 PRK15001 SAM-dependent 23S rib 99.2 2.9E-10 6.2E-15 104.8 13.8 94 166-260 217-310 (378)
82 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.6E-10 3.5E-15 106.1 12.0 114 167-283 112-243 (390)
83 smart00650 rADc Ribosomal RNA 99.2 1.4E-10 3E-15 95.7 10.4 85 167-258 3-87 (169)
84 PRK07402 precorrin-6B methylas 99.2 1.8E-10 3.9E-15 97.3 10.9 113 167-286 30-153 (196)
85 PRK11188 rrmJ 23S rRNA methylt 99.2 2.3E-10 4.9E-15 97.7 11.3 96 176-285 50-175 (209)
86 TIGR02716 C20_methyl_CrtF C-20 99.2 3.1E-10 6.7E-15 102.4 12.2 105 167-276 139-255 (306)
87 PF06325 PrmA: Ribosomal prote 99.2 8.1E-11 1.7E-15 104.9 8.2 114 166-288 152-272 (295)
88 PRK13943 protein-L-isoaspartat 99.2 3E-10 6.6E-15 102.7 12.0 105 167-274 70-179 (322)
89 PRK09489 rsmC 16S ribosomal RN 99.2 5.2E-10 1.1E-14 102.2 13.2 105 167-277 186-305 (342)
90 TIGR03438 probable methyltrans 99.1 5.4E-10 1.2E-14 100.6 12.8 109 177-287 63-189 (301)
91 PRK00517 prmA ribosomal protei 99.1 2.9E-10 6.2E-15 99.7 9.7 101 176-287 118-225 (250)
92 COG4976 Predicted methyltransf 99.1 1.6E-11 3.5E-16 103.1 1.6 108 158-276 107-226 (287)
93 PF13659 Methyltransf_26: Meth 99.1 2.4E-10 5.2E-15 88.0 8.1 80 178-260 1-82 (117)
94 PRK14967 putative methyltransf 99.1 5.8E-10 1.3E-14 96.1 11.1 77 174-256 33-109 (223)
95 TIGR01177 conserved hypothetic 99.1 2E-09 4.4E-14 98.1 13.8 114 167-285 172-304 (329)
96 COG2264 PrmA Ribosomal protein 99.1 4.5E-10 9.8E-15 99.4 9.0 117 166-288 153-276 (300)
97 PHA03411 putative methyltransf 99.1 9.4E-10 2E-14 96.4 10.3 95 157-262 46-140 (279)
98 PRK14966 unknown domain/N5-glu 99.0 1.6E-09 3.4E-14 100.3 11.2 76 177-256 251-327 (423)
99 PRK13256 thiopurine S-methyltr 99.0 2.8E-09 6E-14 91.5 11.9 103 173-277 39-165 (226)
100 PRK00274 ksgA 16S ribosomal RN 99.0 1.5E-09 3.2E-14 96.4 10.2 84 165-256 30-113 (272)
101 PRK14896 ksgA 16S ribosomal RN 99.0 2.3E-09 4.9E-14 94.5 11.3 84 166-258 18-101 (258)
102 COG4123 Predicted O-methyltran 99.0 1E-09 2.2E-14 94.8 8.4 91 167-259 34-126 (248)
103 PRK04266 fibrillarin; Provisio 99.0 1.8E-09 3.9E-14 93.1 9.9 78 172-255 67-148 (226)
104 TIGR03533 L3_gln_methyl protei 99.0 2.5E-09 5.4E-14 95.5 11.1 77 176-255 120-196 (284)
105 TIGR03534 RF_mod_PrmC protein- 99.0 4.1E-09 9E-14 92.0 11.6 85 167-256 78-162 (251)
106 PHA03412 putative methyltransf 99.0 3E-09 6.6E-14 91.2 10.2 92 157-259 31-125 (241)
107 COG2263 Predicted RNA methylas 99.0 5.2E-09 1.1E-13 86.0 10.8 75 174-256 42-116 (198)
108 PRK13168 rumA 23S rRNA m(5)U19 99.0 2.7E-09 5.9E-14 101.1 10.5 85 166-255 286-374 (443)
109 TIGR00536 hemK_fam HemK family 99.0 5.7E-09 1.2E-13 93.2 11.7 74 179-255 116-189 (284)
110 COG2813 RsmC 16S RNA G1207 met 99.0 1E-08 2.2E-13 90.5 12.9 108 166-278 147-269 (300)
111 COG2519 GCD14 tRNA(1-methylade 99.0 8.3E-09 1.8E-13 88.6 11.4 116 162-285 79-205 (256)
112 PRK09328 N5-glutamine S-adenos 99.0 1.4E-08 3.1E-13 89.9 13.4 85 167-255 98-182 (275)
113 PRK11805 N5-glutamine S-adenos 98.9 5.5E-09 1.2E-13 94.2 10.6 75 178-255 134-208 (307)
114 PRK03522 rumB 23S rRNA methylu 98.9 3.4E-09 7.4E-14 96.0 8.9 85 166-255 162-247 (315)
115 PTZ00338 dimethyladenosine tra 98.9 9.6E-09 2.1E-13 92.0 10.9 86 165-256 24-109 (294)
116 TIGR00563 rsmB ribosomal RNA s 98.9 9.8E-09 2.1E-13 96.8 11.4 95 167-263 228-330 (426)
117 PRK10901 16S rRNA methyltransf 98.9 1.8E-08 3.9E-13 95.0 13.0 83 168-254 235-319 (427)
118 TIGR00755 ksgA dimethyladenosi 98.9 1.2E-08 2.7E-13 89.6 10.9 83 166-257 18-103 (253)
119 PF08704 GCD14: tRNA methyltra 98.9 4.9E-08 1.1E-12 85.0 14.3 128 150-284 13-155 (247)
120 cd02440 AdoMet_MTases S-adenos 98.9 8.5E-09 1.8E-13 75.9 8.3 85 180-268 1-87 (107)
121 PRK14901 16S rRNA methyltransf 98.9 1.5E-08 3.3E-13 95.8 11.8 94 167-263 242-346 (434)
122 PF05724 TPMT: Thiopurine S-me 98.9 1.9E-08 4.1E-13 86.3 10.9 101 162-264 22-132 (218)
123 TIGR00438 rrmJ cell division p 98.9 1.9E-08 4.1E-13 84.3 10.6 101 172-286 27-157 (188)
124 COG2890 HemK Methylase of poly 98.9 9.2E-09 2E-13 91.5 9.1 71 180-255 113-183 (280)
125 PLN02232 ubiquinone biosynthes 98.9 5.9E-09 1.3E-13 85.2 6.8 75 205-279 1-85 (160)
126 PRK01544 bifunctional N5-gluta 98.8 2E-08 4.3E-13 96.5 11.0 75 178-255 139-213 (506)
127 KOG2940 Predicted methyltransf 98.8 4.4E-09 9.5E-14 88.6 5.5 104 178-287 73-186 (325)
128 KOG3010 Methyltransferase [Gen 98.8 8E-09 1.7E-13 87.8 6.5 94 180-278 36-140 (261)
129 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.4E-08 9.6E-13 86.6 11.4 81 171-254 65-146 (264)
130 PRK04457 spermidine synthase; 98.8 4.4E-08 9.6E-13 86.4 11.4 78 176-255 65-143 (262)
131 PRK14904 16S rRNA methyltransf 98.8 6.2E-08 1.3E-12 91.9 12.8 82 169-254 242-324 (445)
132 PRK10909 rsmD 16S rRNA m(2)G96 98.8 3E-08 6.6E-13 83.8 9.5 87 167-257 42-130 (199)
133 TIGR03704 PrmC_rel_meth putati 98.8 4.5E-08 9.8E-13 85.8 10.8 73 178-256 87-161 (251)
134 PRK14903 16S rRNA methyltransf 98.8 4.4E-08 9.5E-13 92.4 11.5 84 168-254 228-313 (431)
135 PTZ00146 fibrillarin; Provisio 98.8 4.6E-08 9.9E-13 86.7 10.4 80 173-257 128-211 (293)
136 PF02390 Methyltransf_4: Putat 98.8 8.2E-08 1.8E-12 81.0 10.9 76 178-256 18-96 (195)
137 TIGR00479 rumA 23S rRNA (uraci 98.8 3.6E-08 7.8E-13 93.2 9.6 84 166-254 281-368 (431)
138 PRK14902 16S rRNA methyltransf 98.8 9.6E-08 2.1E-12 90.6 12.4 84 168-255 241-327 (444)
139 PLN02672 methionine S-methyltr 98.7 5.6E-08 1.2E-12 99.5 10.5 79 178-256 119-211 (1082)
140 PRK04148 hypothetical protein; 98.7 1.2E-07 2.5E-12 74.6 9.6 79 167-257 6-86 (134)
141 KOG3420 Predicted RNA methylas 98.7 3.6E-08 7.8E-13 77.4 6.3 87 167-258 38-124 (185)
142 PRK15128 23S rRNA m(5)C1962 me 98.7 8.4E-08 1.8E-12 89.3 9.1 94 158-255 203-300 (396)
143 KOG2361 Predicted methyltransf 98.7 5.9E-08 1.3E-12 82.5 7.0 102 180-285 74-193 (264)
144 PLN02781 Probable caffeoyl-CoA 98.7 8.7E-08 1.9E-12 83.2 8.1 89 166-256 57-152 (234)
145 PF03291 Pox_MCEL: mRNA cappin 98.6 1.6E-07 3.4E-12 85.4 9.8 104 177-281 62-192 (331)
146 TIGR02085 meth_trns_rumB 23S r 98.6 9.9E-08 2.2E-12 88.5 8.6 84 167-255 223-307 (374)
147 COG0030 KsgA Dimethyladenosine 98.6 2.5E-07 5.4E-12 80.7 10.4 84 166-256 19-103 (259)
148 PF00891 Methyltransf_2: O-met 98.6 2E-07 4.4E-12 81.1 10.0 96 169-277 92-201 (241)
149 PRK00811 spermidine synthase; 98.6 2.5E-07 5.4E-12 82.6 10.1 81 177-257 76-159 (283)
150 PF01170 UPF0020: Putative RNA 98.6 2E-07 4.2E-12 77.7 8.4 90 166-257 17-115 (179)
151 PRK00050 16S rRNA m(4)C1402 me 98.6 2.8E-07 6.1E-12 82.3 9.1 98 166-268 8-112 (296)
152 PRK11727 23S rRNA mA1618 methy 98.6 3.6E-07 7.8E-12 82.5 9.7 81 177-258 114-199 (321)
153 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.1E-07 4.7E-12 92.9 8.6 76 178-255 539-615 (702)
154 KOG1499 Protein arginine N-met 98.5 3.2E-07 6.9E-12 82.3 8.3 78 175-256 58-135 (346)
155 PRK03612 spermidine synthase; 98.5 5.9E-07 1.3E-11 86.8 9.5 82 177-258 297-383 (521)
156 COG4122 Predicted O-methyltran 98.5 5.1E-07 1.1E-11 76.9 8.0 90 166-257 48-141 (219)
157 COG0220 Predicted S-adenosylme 98.5 5.9E-07 1.3E-11 77.3 8.0 82 172-256 43-127 (227)
158 PF05219 DREV: DREV methyltran 98.5 8.4E-07 1.8E-11 76.8 8.8 88 177-278 94-191 (265)
159 TIGR00478 tly hemolysin TlyA f 98.5 6.9E-07 1.5E-11 77.0 8.1 90 169-268 66-162 (228)
160 COG3963 Phospholipid N-methylt 98.4 2.2E-06 4.8E-11 69.1 9.9 112 160-279 31-160 (194)
161 KOG2904 Predicted methyltransf 98.4 1.4E-06 3.1E-11 75.4 9.4 77 178-256 149-230 (328)
162 PF10294 Methyltransf_16: Puta 98.4 1.2E-06 2.7E-11 72.4 8.7 87 175-262 43-133 (173)
163 PF01596 Methyltransf_3: O-met 98.4 4E-07 8.7E-12 77.3 5.8 80 176-257 44-130 (205)
164 PRK01581 speE spermidine synth 98.4 1.7E-06 3.7E-11 78.9 10.1 79 177-255 150-233 (374)
165 KOG0820 Ribosomal RNA adenine 98.4 2.1E-06 4.5E-11 74.4 9.7 85 166-256 47-131 (315)
166 TIGR00417 speE spermidine synt 98.4 3.1E-06 6.8E-11 75.0 11.1 80 178-257 73-154 (270)
167 PLN02366 spermidine synthase 98.4 1.8E-06 4E-11 77.8 9.6 81 177-257 91-174 (308)
168 COG1041 Predicted DNA modifica 98.4 1.5E-06 3.3E-11 78.3 8.9 85 166-255 186-271 (347)
169 PLN02476 O-methyltransferase 98.4 2.8E-06 6.1E-11 75.2 9.9 89 166-256 107-202 (278)
170 TIGR02143 trmA_only tRNA (urac 98.3 1.2E-06 2.5E-11 80.7 7.3 70 166-241 187-256 (353)
171 KOG1661 Protein-L-isoaspartate 98.3 2.5E-06 5.4E-11 71.3 8.4 106 167-276 74-194 (237)
172 KOG1500 Protein arginine N-met 98.3 2.6E-06 5.6E-11 75.8 8.8 76 174-254 174-249 (517)
173 TIGR00095 RNA methyltransferas 98.3 4E-06 8.6E-11 70.4 9.6 75 177-254 49-127 (189)
174 PRK05031 tRNA (uracil-5-)-meth 98.3 1.8E-06 3.8E-11 79.8 8.2 70 166-241 196-265 (362)
175 PF05185 PRMT5: PRMT5 arginine 98.3 6.4E-06 1.4E-10 77.9 11.7 74 178-254 187-264 (448)
176 COG2265 TrmA SAM-dependent met 98.3 2.6E-06 5.6E-11 80.1 8.4 85 165-254 281-368 (432)
177 COG1092 Predicted SAM-dependen 98.3 3.6E-06 7.8E-11 77.9 9.0 94 157-254 199-296 (393)
178 KOG1975 mRNA cap methyltransfe 98.3 4.9E-06 1.1E-10 73.8 9.1 84 177-261 117-209 (389)
179 PF02475 Met_10: Met-10+ like- 98.3 5.2E-06 1.1E-10 70.1 9.0 85 167-256 93-177 (200)
180 KOG3191 Predicted N6-DNA-methy 98.3 1.8E-05 3.9E-10 64.7 11.6 76 176-256 42-118 (209)
181 PF05958 tRNA_U5-meth_tr: tRNA 98.2 5.5E-06 1.2E-10 76.3 8.8 72 165-242 185-256 (352)
182 PF00398 RrnaAD: Ribosomal RNA 98.2 8.8E-06 1.9E-10 71.9 9.7 84 166-256 19-105 (262)
183 PF03141 Methyltransf_29: Puta 98.2 2.4E-06 5.3E-11 80.0 6.0 101 166-278 102-222 (506)
184 PRK10611 chemotaxis methyltran 98.2 9.6E-06 2.1E-10 72.3 9.5 106 159-264 96-239 (287)
185 PF02384 N6_Mtase: N-6 DNA Met 98.2 5E-06 1.1E-10 75.1 7.8 98 158-256 27-133 (311)
186 COG2835 Uncharacterized conser 98.2 1E-06 2.2E-11 58.3 2.1 46 67-121 4-49 (60)
187 PRK11827 hypothetical protein; 98.2 1E-06 2.2E-11 58.9 2.0 46 68-122 5-50 (60)
188 PF09445 Methyltransf_15: RNA 98.2 3.1E-06 6.7E-11 69.0 5.0 72 180-255 2-76 (163)
189 PF05891 Methyltransf_PK: AdoM 98.1 4.2E-06 9E-11 70.8 5.9 86 177-266 55-140 (218)
190 TIGR00006 S-adenosyl-methyltra 98.1 2E-05 4.4E-10 70.6 10.5 100 165-268 8-114 (305)
191 PRK04338 N(2),N(2)-dimethylgua 98.1 6.4E-06 1.4E-10 76.5 7.5 75 178-255 58-132 (382)
192 PF10672 Methyltrans_SAM: S-ad 98.1 1.2E-05 2.6E-10 71.5 8.8 75 178-254 124-201 (286)
193 KOG2915 tRNA(1-methyladenosine 98.1 3.9E-05 8.5E-10 66.6 11.3 90 164-255 92-184 (314)
194 PLN02589 caffeoyl-CoA O-methyl 98.1 1.2E-05 2.5E-10 70.3 7.7 89 166-256 68-164 (247)
195 PRK01544 bifunctional N5-gluta 98.1 1.7E-05 3.6E-10 76.4 9.2 78 177-257 347-426 (506)
196 PF06080 DUF938: Protein of un 98.0 2.7E-05 5.8E-10 65.5 8.8 95 166-263 15-117 (204)
197 PF01739 CheR: CheR methyltran 98.0 1.2E-05 2.6E-10 67.8 6.7 90 177-266 31-154 (196)
198 PF13679 Methyltransf_32: Meth 98.0 2.8E-05 6.1E-10 62.1 8.3 80 176-257 24-108 (141)
199 COG0116 Predicted N6-adenine-s 98.0 3.7E-05 8E-10 70.4 9.7 89 166-256 180-307 (381)
200 PF03602 Cons_hypoth95: Conser 98.0 1.2E-05 2.5E-10 67.2 5.5 87 166-255 29-121 (183)
201 COG2520 Predicted methyltransf 98.0 6.1E-05 1.3E-09 68.4 10.4 112 165-281 178-295 (341)
202 TIGR01444 fkbM_fam methyltrans 98.0 3.8E-05 8.2E-10 61.0 7.8 59 180-241 1-59 (143)
203 PF09243 Rsm22: Mitochondrial 97.9 8.2E-05 1.8E-09 66.1 10.4 106 168-278 24-142 (274)
204 PF02527 GidB: rRNA small subu 97.9 0.00011 2.4E-09 61.3 10.4 75 180-258 51-125 (184)
205 KOG1331 Predicted methyltransf 97.9 8E-06 1.7E-10 71.4 3.4 89 163-266 33-121 (293)
206 KOG2899 Predicted methyltransf 97.9 6.2E-05 1.4E-09 64.4 8.1 47 177-223 58-104 (288)
207 KOG1269 SAM-dependent methyltr 97.9 3.3E-05 7.2E-10 71.0 6.8 90 176-268 109-198 (364)
208 PF05148 Methyltransf_8: Hypot 97.9 2.9E-05 6.2E-10 65.3 5.8 109 144-277 42-160 (219)
209 COG0742 N6-adenine-specific me 97.9 0.00015 3.2E-09 60.3 9.7 92 164-258 28-124 (187)
210 PLN02823 spermine synthase 97.8 5.4E-05 1.2E-09 69.0 7.5 79 177-255 103-183 (336)
211 KOG2187 tRNA uracil-5-methyltr 97.8 2.4E-05 5.3E-10 73.4 5.1 73 165-242 371-443 (534)
212 PF12147 Methyltransf_20: Puta 97.8 0.00033 7.1E-09 61.8 11.8 88 176-265 134-226 (311)
213 PF08123 DOT1: Histone methyla 97.8 5.1E-05 1.1E-09 64.4 6.5 92 167-258 32-132 (205)
214 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00016 3.5E-09 72.4 11.0 89 166-256 178-311 (702)
215 TIGR02987 met_A_Alw26 type II 97.8 7.4E-05 1.6E-09 72.5 8.0 96 158-256 5-120 (524)
216 COG3897 Predicted methyltransf 97.8 5.5E-05 1.2E-09 62.7 5.9 92 169-268 71-162 (218)
217 COG0421 SpeE Spermidine syntha 97.8 0.00012 2.7E-09 65.0 8.3 79 179-257 78-158 (282)
218 PF07091 FmrO: Ribosomal RNA m 97.7 0.00011 2.4E-09 63.5 7.6 94 166-266 96-189 (251)
219 KOG2730 Methylase [General fun 97.7 2.8E-05 6E-10 65.5 3.7 91 161-255 77-172 (263)
220 COG4076 Predicted RNA methylas 97.7 4.9E-05 1.1E-09 62.6 5.0 71 178-255 33-103 (252)
221 PRK11933 yebU rRNA (cytosine-C 97.7 0.00032 7E-09 66.8 11.2 78 174-254 110-189 (470)
222 COG0293 FtsJ 23S rRNA methylas 97.7 0.00031 6.8E-09 59.2 9.4 97 176-286 44-170 (205)
223 COG0357 GidB Predicted S-adeno 97.7 0.00029 6.2E-09 60.0 9.2 77 178-257 68-144 (215)
224 TIGR03439 methyl_EasF probable 97.7 0.00092 2E-08 60.6 12.8 109 177-287 76-209 (319)
225 PRK11760 putative 23S rRNA C24 97.6 0.00036 7.9E-09 63.1 9.4 70 176-257 210-279 (357)
226 COG0500 SmtA SAM-dependent met 97.6 0.00063 1.4E-08 52.9 9.8 94 181-280 52-160 (257)
227 PF04816 DUF633: Family of unk 97.5 0.0003 6.4E-09 59.8 7.3 73 181-256 1-74 (205)
228 COG2521 Predicted archaeal met 97.5 6E-05 1.3E-09 64.2 3.0 83 170-254 127-211 (287)
229 PF01795 Methyltransf_5: MraW 97.5 0.00012 2.6E-09 65.7 4.6 99 166-268 9-115 (310)
230 COG1352 CheR Methylase of chem 97.5 0.00068 1.5E-08 59.8 9.2 90 178-267 97-221 (268)
231 PF01728 FtsJ: FtsJ-like methy 97.5 0.00011 2.3E-09 61.1 4.0 95 177-285 23-149 (181)
232 KOG2352 Predicted spermine/spe 97.5 0.00091 2E-08 62.8 10.3 84 180-268 51-134 (482)
233 PF03966 Trm112p: Trm112p-like 97.5 5.1E-05 1.1E-09 52.7 1.6 47 67-113 3-68 (68)
234 KOG3045 Predicted RNA methylas 97.4 0.00097 2.1E-08 57.7 8.5 126 125-277 130-266 (325)
235 PF01564 Spermine_synth: Sperm 97.3 0.00085 1.9E-08 58.7 7.7 81 177-257 76-159 (246)
236 KOG3178 Hydroxyindole-O-methyl 97.3 0.0008 1.7E-08 60.8 7.0 87 179-277 179-277 (342)
237 COG2384 Predicted SAM-dependen 97.2 0.0024 5.2E-08 54.1 8.7 85 167-256 8-93 (226)
238 PF11968 DUF3321: Putative met 97.2 0.00063 1.4E-08 57.6 5.2 79 179-278 53-152 (219)
239 KOG1663 O-methyltransferase [S 97.1 0.0033 7.1E-08 53.6 9.0 89 164-254 60-155 (237)
240 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0015 3.3E-08 60.5 7.4 76 178-256 45-122 (374)
241 PF04672 Methyltransf_19: S-ad 97.1 0.0043 9.3E-08 54.5 9.4 95 168-265 58-167 (267)
242 COG0275 Predicted S-adenosylme 97.1 0.0056 1.2E-07 54.4 10.0 99 166-268 12-118 (314)
243 PF05971 Methyltransf_10: Prot 97.1 0.003 6.5E-08 56.5 8.4 82 178-260 103-189 (299)
244 COG0144 Sun tRNA and rRNA cyto 97.1 0.012 2.5E-07 54.4 12.7 84 168-254 147-235 (355)
245 KOG3987 Uncharacterized conser 97.0 0.00014 3E-09 60.8 -0.3 87 177-277 112-209 (288)
246 PRK00536 speE spermidine synth 97.0 0.0036 7.8E-08 55.1 8.2 76 176-256 71-147 (262)
247 KOG4589 Cell division protein 97.0 0.004 8.6E-08 51.5 7.6 97 176-286 68-195 (232)
248 PRK10742 putative methyltransf 96.9 0.0053 1.1E-07 53.3 8.4 92 167-260 76-176 (250)
249 KOG3115 Methyltransferase-like 96.8 0.0023 5E-08 53.5 5.0 63 178-240 61-127 (249)
250 KOG4058 Uncharacterized conser 96.8 0.0044 9.5E-08 49.3 6.2 101 163-268 58-158 (199)
251 COG0286 HsdM Type I restrictio 96.7 0.0086 1.9E-07 57.6 8.9 117 140-258 144-274 (489)
252 PF03059 NAS: Nicotianamine sy 96.6 0.009 2E-07 52.9 8.0 81 178-259 121-203 (276)
253 COG4262 Predicted spermidine s 96.4 0.021 4.5E-07 52.0 8.5 86 178-268 290-380 (508)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.3 0.011 2.3E-07 52.9 6.5 82 170-254 78-162 (283)
255 PF04445 SAM_MT: Putative SAM- 96.2 0.019 4.1E-07 49.6 7.3 92 167-260 63-163 (234)
256 PF01269 Fibrillarin: Fibrilla 96.2 0.097 2.1E-06 44.7 11.2 79 173-256 69-151 (229)
257 PHA01634 hypothetical protein 96.1 0.047 1E-06 42.4 8.2 47 177-224 28-74 (156)
258 PF01555 N6_N4_Mtase: DNA meth 96.1 0.02 4.3E-07 48.6 6.9 56 161-219 176-231 (231)
259 PRK11524 putative methyltransf 96.1 0.025 5.5E-07 50.5 7.7 58 163-223 195-252 (284)
260 PF02636 Methyltransf_28: Puta 96.1 0.016 3.4E-07 50.8 6.3 80 178-262 19-109 (252)
261 PF07757 AdoMet_MTase: Predict 95.9 0.009 2E-07 44.9 3.5 32 177-210 58-89 (112)
262 PRK13699 putative methylase; P 95.7 0.052 1.1E-06 46.9 7.9 61 161-224 148-208 (227)
263 PF07942 N2227: N2227-like pro 95.6 0.081 1.7E-06 46.8 8.8 81 177-259 56-176 (270)
264 COG1189 Predicted rRNA methyla 95.4 0.046 9.9E-07 47.1 6.3 74 176-259 78-155 (245)
265 KOG1709 Guanidinoacetate methy 95.4 0.073 1.6E-06 45.2 7.4 77 176-257 100-178 (271)
266 KOG1122 tRNA and rRNA cytosine 95.0 0.22 4.7E-06 46.4 9.9 78 173-254 237-318 (460)
267 KOG2671 Putative RNA methylase 95.0 0.024 5.2E-07 51.2 3.6 79 174-255 205-291 (421)
268 PF11599 AviRa: RRNA methyltra 94.9 0.082 1.8E-06 44.8 6.4 56 167-222 41-98 (246)
269 KOG1501 Arginine N-methyltrans 94.9 0.06 1.3E-06 50.2 6.0 61 179-242 68-128 (636)
270 cd00315 Cyt_C5_DNA_methylase C 94.9 0.091 2E-06 46.7 7.1 68 180-257 2-71 (275)
271 KOG3201 Uncharacterized conser 94.9 0.0099 2.1E-07 48.1 0.7 108 176-283 28-149 (201)
272 COG1198 PriA Primosomal protei 94.8 0.22 4.7E-06 50.1 9.9 99 179-280 484-605 (730)
273 PRK00420 hypothetical protein; 94.0 0.038 8.2E-07 42.0 2.1 31 72-112 24-54 (112)
274 KOG2793 Putative N2,N2-dimethy 93.9 0.33 7.2E-06 42.3 8.1 102 177-279 86-203 (248)
275 COG1889 NOP1 Fibrillarin-like 93.7 0.63 1.4E-05 39.3 9.0 77 173-254 72-151 (231)
276 COG3129 Predicted SAM-dependen 93.7 0.29 6.2E-06 42.1 7.1 83 177-260 78-165 (292)
277 PF01861 DUF43: Protein of unk 93.4 1.1 2.5E-05 38.7 10.4 74 176-254 43-118 (243)
278 KOG1088 Uncharacterized conser 93.2 0.044 9.5E-07 41.4 1.3 27 94-120 94-120 (124)
279 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.1 0.15 3.2E-06 44.8 4.6 102 176-278 55-202 (256)
280 PF08271 TF_Zn_Ribbon: TFIIB z 93.1 0.057 1.2E-06 33.6 1.5 28 72-107 1-28 (43)
281 TIGR01206 lysW lysine biosynth 92.9 0.072 1.6E-06 35.0 1.9 33 71-110 2-34 (54)
282 PF13578 Methyltransf_24: Meth 92.3 0.028 6.2E-07 42.0 -0.7 72 182-256 1-77 (106)
283 COG1565 Uncharacterized conser 92.2 0.56 1.2E-05 43.0 7.2 48 177-224 77-132 (370)
284 COG1645 Uncharacterized Zn-fin 92.1 0.089 1.9E-06 41.0 1.7 23 73-106 30-52 (131)
285 PF13719 zinc_ribbon_5: zinc-r 92.1 0.12 2.5E-06 31.2 1.9 34 72-109 3-36 (37)
286 PF10571 UPF0547: Uncharacteri 92.0 0.11 2.3E-06 28.7 1.5 24 73-109 2-25 (26)
287 PRK09678 DNA-binding transcrip 91.9 0.16 3.5E-06 35.4 2.7 49 71-120 1-51 (72)
288 PF13240 zinc_ribbon_2: zinc-r 91.6 0.1 2.2E-06 27.9 1.1 21 73-106 1-21 (23)
289 PRK00398 rpoP DNA-directed RNA 91.4 0.2 4.3E-06 31.7 2.5 30 70-108 2-31 (46)
290 PF03492 Methyltransf_7: SAM d 91.4 2.1 4.5E-05 39.2 10.1 88 176-263 15-122 (334)
291 PF14803 Nudix_N_2: Nudix N-te 91.3 0.1 2.2E-06 30.8 1.0 31 73-108 2-32 (34)
292 PF09297 zf-NADH-PPase: NADH p 91.2 0.12 2.6E-06 30.0 1.2 27 73-108 5-31 (32)
293 COG1064 AdhP Zn-dependent alco 91.1 0.75 1.6E-05 42.0 6.9 94 173-277 162-261 (339)
294 PLN02668 indole-3-acetate carb 91.0 0.66 1.4E-05 43.2 6.5 86 178-263 64-177 (386)
295 PF08421 Methyltransf_13: Puta 90.9 0.075 1.6E-06 36.0 0.2 36 46-82 16-52 (62)
296 COG1997 RPL43A Ribosomal prote 90.7 0.18 3.8E-06 36.2 1.9 31 71-110 35-65 (89)
297 PF04989 CmcI: Cephalosporin h 90.4 0.37 8E-06 40.8 4.0 61 178-242 33-97 (206)
298 PF09862 DUF2089: Protein of u 90.3 0.15 3.2E-06 38.8 1.4 22 74-108 1-22 (113)
299 PF06962 rRNA_methylase: Putat 90.3 1.4 3.1E-05 34.9 7.0 60 203-266 1-62 (140)
300 PF13717 zinc_ribbon_4: zinc-r 89.9 0.26 5.6E-06 29.5 1.9 33 72-108 3-35 (36)
301 TIGR02098 MJ0042_CXXC MJ0042 f 89.9 0.17 3.6E-06 30.5 1.1 34 72-109 3-36 (38)
302 TIGR00595 priA primosomal prot 89.7 3.4 7.4E-05 40.0 10.6 33 179-211 262-294 (505)
303 PF14446 Prok-RING_1: Prokaryo 89.6 0.24 5.2E-06 32.4 1.7 27 72-109 6-32 (54)
304 KOG2651 rRNA adenine N-6-methy 89.5 1.2 2.5E-05 41.2 6.6 42 177-219 153-194 (476)
305 COG1867 TRM1 N2,N2-dimethylgua 89.4 0.61 1.3E-05 42.8 4.8 74 178-254 53-127 (380)
306 COG1568 Predicted methyltransf 89.2 0.68 1.5E-05 40.9 4.7 75 176-254 151-227 (354)
307 PHA00626 hypothetical protein 89.0 0.31 6.8E-06 31.9 1.9 33 73-110 2-35 (59)
308 smart00661 RPOL9 RNA polymeras 88.7 0.6 1.3E-05 30.0 3.2 34 73-113 2-35 (52)
309 PF13248 zf-ribbon_3: zinc-rib 88.7 0.23 4.9E-06 27.4 1.0 22 72-106 3-24 (26)
310 COG1656 Uncharacterized conser 88.5 0.19 4.1E-06 40.7 0.8 39 70-109 96-141 (165)
311 PF08274 PhnA_Zn_Ribbon: PhnA 88.5 0.26 5.7E-06 28.2 1.2 25 73-107 4-28 (30)
312 PF05206 TRM13: Methyltransfer 88.4 2 4.2E-05 37.9 7.2 65 176-243 17-86 (259)
313 KOG1596 Fibrillarin and relate 88.2 1.7 3.8E-05 37.7 6.4 77 173-254 152-232 (317)
314 PF11899 DUF3419: Protein of u 88.2 1.8 3.9E-05 40.3 7.2 54 168-223 26-79 (380)
315 PF02005 TRM: N2,N2-dimethylgu 88.0 0.92 2E-05 42.3 5.1 76 178-254 50-127 (377)
316 PF08792 A2L_zn_ribbon: A2L zi 87.7 0.53 1.1E-05 27.6 2.2 30 71-109 3-32 (33)
317 PF07191 zinc-ribbons_6: zinc- 87.7 0.25 5.3E-06 34.1 0.9 28 72-110 2-29 (70)
318 KOG0024 Sorbitol dehydrogenase 86.9 2.2 4.7E-05 38.7 6.6 48 173-220 165-213 (354)
319 PF02150 RNA_POL_M_15KD: RNA p 86.6 0.42 9.1E-06 28.4 1.3 32 72-111 2-33 (35)
320 PRK05580 primosome assembly pr 86.2 7 0.00015 39.4 10.6 31 180-210 431-461 (679)
321 PTZ00357 methyltransferase; Pr 86.0 3.4 7.4E-05 41.2 7.8 74 180-254 703-798 (1072)
322 PRK00432 30S ribosomal protein 85.9 0.58 1.2E-05 30.2 1.8 26 73-108 22-47 (50)
323 PF00145 DNA_methylase: C-5 cy 85.5 1.2 2.6E-05 39.9 4.5 66 180-257 2-70 (335)
324 COG0863 DNA modification methy 85.3 4 8.7E-05 36.2 7.7 59 163-224 209-267 (302)
325 KOG1562 Spermidine synthase [A 85.1 1.2 2.5E-05 39.8 3.9 78 177-254 121-201 (337)
326 PF01096 TFIIS_C: Transcriptio 85.1 0.28 6E-06 29.9 0.0 36 73-108 2-38 (39)
327 PRK06266 transcription initiat 85.0 0.36 7.8E-06 40.0 0.7 34 65-106 111-144 (178)
328 smart00440 ZnF_C2C2 C2C2 Zinc 85.0 0.51 1.1E-05 28.9 1.2 36 73-108 2-38 (40)
329 PRK10458 DNA cytosine methylas 85.0 6.3 0.00014 37.8 9.1 74 164-243 68-147 (467)
330 PRK10220 hypothetical protein; 84.9 0.8 1.7E-05 34.3 2.4 30 72-111 4-33 (111)
331 KOG2920 Predicted methyltransf 84.9 0.8 1.7E-05 40.6 2.8 37 177-214 116-152 (282)
332 COG1063 Tdh Threonine dehydrog 84.8 3.1 6.6E-05 38.3 6.8 44 177-220 168-212 (350)
333 PF05050 Methyltransf_21: Meth 84.8 2.2 4.7E-05 33.9 5.2 38 183-220 1-42 (167)
334 PF14353 CpXC: CpXC protein 84.7 0.52 1.1E-05 36.7 1.4 42 72-113 2-53 (128)
335 COG5459 Predicted rRNA methyla 84.2 3.4 7.4E-05 37.9 6.5 102 174-278 110-228 (484)
336 PF06677 Auto_anti-p27: Sjogre 84.2 0.74 1.6E-05 28.4 1.7 23 73-105 19-41 (41)
337 PRK14873 primosome assembly pr 84.2 11 0.00024 37.8 10.9 75 178-264 430-506 (665)
338 KOG0821 Predicted ribosomal RN 84.2 2.5 5.5E-05 36.2 5.4 71 167-242 40-110 (326)
339 PF03119 DNA_ligase_ZBD: NAD-d 84.2 0.48 1E-05 26.6 0.7 22 73-103 1-22 (28)
340 TIGR00675 dcm DNA-methyltransf 84.1 2.2 4.8E-05 38.6 5.5 66 181-256 1-67 (315)
341 TIGR00373 conserved hypothetic 84.1 0.4 8.7E-06 38.9 0.6 35 65-107 103-137 (158)
342 COG3809 Uncharacterized protei 84.1 0.57 1.2E-05 32.9 1.2 36 71-113 1-36 (88)
343 PF11781 RRN7: RNA polymerase 83.2 0.66 1.4E-05 27.7 1.1 26 72-107 9-34 (36)
344 TIGR00686 phnA alkylphosphonat 83.2 0.94 2E-05 34.0 2.1 29 73-111 4-32 (109)
345 TIGR00497 hsdM type I restrict 83.1 6.3 0.00014 38.1 8.5 97 159-256 197-301 (501)
346 PF01927 Mut7-C: Mut7-C RNAse 82.8 0.75 1.6E-05 36.8 1.7 39 71-110 91-136 (147)
347 smart00659 RPOLCX RNA polymera 82.7 1.1 2.4E-05 28.1 2.0 27 71-107 2-28 (44)
348 PF07754 DUF1610: Domain of un 82.5 1.3 2.7E-05 23.9 1.9 23 74-105 1-23 (24)
349 smart00834 CxxC_CXXC_SSSS Puta 82.3 0.82 1.8E-05 27.7 1.4 31 70-106 4-34 (41)
350 PF09538 FYDLN_acid: Protein o 82.0 0.92 2E-05 34.3 1.8 30 72-111 10-39 (108)
351 COG4798 Predicted methyltransf 81.9 3.9 8.6E-05 34.4 5.5 43 170-212 41-84 (238)
352 KOG2906 RNA polymerase III sub 81.7 0.67 1.4E-05 34.0 0.9 37 71-114 1-37 (105)
353 smart00531 TFIIE Transcription 81.7 0.67 1.4E-05 37.1 1.0 37 68-107 96-132 (147)
354 PRK00464 nrdR transcriptional 81.6 0.98 2.1E-05 36.5 1.9 40 72-112 1-42 (154)
355 COG5379 BtaA S-adenosylmethion 81.2 4.2 9E-05 36.4 5.8 50 173-224 59-108 (414)
356 PF12760 Zn_Tnp_IS1595: Transp 81.1 1.1 2.5E-05 28.2 1.7 27 72-106 19-45 (46)
357 KOG1227 Putative methyltransfe 80.8 1.5 3.2E-05 39.2 2.9 75 178-256 195-270 (351)
358 KOG2078 tRNA modification enzy 80.8 1.8 3.9E-05 40.5 3.5 69 167-240 241-309 (495)
359 COG3510 CmcI Cephalosporin hyd 80.2 4.9 0.00011 33.8 5.5 69 166-242 58-130 (237)
360 PF01780 Ribosomal_L37ae: Ribo 80.1 0.88 1.9E-05 33.1 1.1 31 70-109 34-64 (90)
361 KOG1098 Putative SAM-dependent 79.8 4.2 9.1E-05 40.0 5.7 37 175-211 42-79 (780)
362 KOG2539 Mitochondrial/chloropl 79.4 5.1 0.00011 38.1 6.0 89 177-268 200-294 (491)
363 PRK09880 L-idonate 5-dehydroge 79.3 8.7 0.00019 34.8 7.7 46 175-220 167-213 (343)
364 KOG2782 Putative SAM dependent 79.3 1.3 2.7E-05 37.9 1.9 100 166-268 32-140 (303)
365 COG2888 Predicted Zn-ribbon RN 79.2 1.4 3.1E-05 29.3 1.7 36 67-106 23-58 (61)
366 PF03514 GRAS: GRAS domain fam 77.8 7.4 0.00016 36.2 6.7 97 167-263 100-215 (374)
367 COG1255 Uncharacterized protei 77.8 4.8 0.0001 30.8 4.4 62 178-255 14-77 (129)
368 KOG2198 tRNA cytosine-5-methyl 77.7 13 0.00027 34.4 7.9 80 172-254 150-242 (375)
369 COG1326 Uncharacterized archae 77.6 1.1 2.5E-05 37.1 1.1 37 71-110 6-42 (201)
370 cd08283 FDH_like_1 Glutathione 77.4 8.2 0.00018 35.7 7.0 48 173-220 180-228 (386)
371 COG1571 Predicted DNA-binding 77.3 1.4 3.1E-05 41.2 1.8 36 67-112 346-381 (421)
372 KOG0822 Protein kinase inhibit 77.2 7.7 0.00017 37.5 6.6 73 179-254 369-445 (649)
373 COG3877 Uncharacterized protei 77.1 1.3 2.9E-05 33.0 1.2 24 72-108 7-30 (122)
374 PF03604 DNA_RNApol_7kD: DNA d 77.0 1.9 4.2E-05 25.0 1.7 26 72-107 1-26 (32)
375 COG1096 Predicted RNA-binding 77.0 1.6 3.4E-05 36.2 1.7 35 64-109 142-176 (188)
376 smart00778 Prim_Zn_Ribbon Zinc 75.9 3.1 6.7E-05 25.0 2.4 27 73-106 5-33 (37)
377 COG1779 C4-type Zn-finger prot 75.6 1 2.2E-05 37.6 0.4 41 69-109 12-54 (201)
378 PF04606 Ogr_Delta: Ogr/Delta- 75.6 1.1 2.5E-05 28.3 0.5 40 73-113 1-42 (47)
379 TIGR02300 FYDLN_acid conserved 75.4 2 4.4E-05 33.2 1.9 31 71-111 9-39 (129)
380 PRK12495 hypothetical protein; 75.2 2 4.3E-05 36.5 1.9 32 68-110 39-70 (226)
381 COG2933 Predicted SAM-dependen 75.1 11 0.00024 33.3 6.5 70 176-257 210-279 (358)
382 PF03141 Methyltransf_29: Puta 74.9 10 0.00022 36.5 6.7 76 178-264 366-443 (506)
383 COG0270 Dcm Site-specific DNA 74.9 10 0.00022 34.6 6.7 74 178-260 3-79 (328)
384 TIGR03655 anti_R_Lar restricti 74.5 2.5 5.4E-05 27.5 1.9 36 72-110 2-38 (53)
385 PF13453 zf-TFIIB: Transcripti 74.4 0.89 1.9E-05 27.9 -0.2 30 73-109 1-30 (41)
386 PRK14890 putative Zn-ribbon RN 74.3 2.3 5E-05 28.3 1.7 12 69-80 23-34 (59)
387 COG4888 Uncharacterized Zn rib 73.9 1.7 3.8E-05 32.1 1.2 37 71-110 22-58 (104)
388 COG1998 RPS31 Ribosomal protei 73.4 2.5 5.4E-05 27.0 1.6 26 72-108 20-47 (51)
389 PRK09496 trkA potassium transp 73.0 32 0.00069 32.4 9.9 68 178-255 231-304 (453)
390 TIGR01384 TFS_arch transcripti 72.8 2.6 5.7E-05 31.4 2.0 27 73-110 2-28 (104)
391 COG1327 Predicted transcriptio 72.6 2.1 4.6E-05 34.1 1.4 42 72-113 1-43 (156)
392 PF07282 OrfB_Zn_ribbon: Putat 72.5 2.7 5.8E-05 28.7 1.8 28 71-107 28-55 (69)
393 PF12692 Methyltransf_17: S-ad 72.4 10 0.00022 30.4 5.2 33 178-210 29-61 (160)
394 TIGR00244 transcriptional regu 72.4 2.4 5.2E-05 33.8 1.7 42 72-113 1-43 (147)
395 COG4640 Predicted membrane pro 72.3 1.9 4.2E-05 39.7 1.3 30 71-113 1-30 (465)
396 PF02737 3HCDH_N: 3-hydroxyacy 72.2 11 0.00025 31.0 5.9 42 180-223 1-44 (180)
397 PTZ00255 60S ribosomal protein 72.1 2.5 5.3E-05 30.8 1.6 31 70-109 35-65 (90)
398 PF14205 Cys_rich_KTR: Cystein 72.1 3.2 7E-05 27.1 1.9 35 72-111 5-41 (55)
399 TIGR00280 L37a ribosomal prote 72.0 2.2 4.8E-05 31.1 1.3 31 70-109 34-64 (91)
400 PHA02998 RNA polymerase subuni 71.5 2.3 4.9E-05 34.9 1.4 39 72-110 144-183 (195)
401 PF10122 Mu-like_Com: Mu-like 71.2 1.6 3.5E-05 28.1 0.4 37 69-112 2-38 (51)
402 PRK14892 putative transcriptio 70.9 3.6 7.8E-05 30.6 2.3 35 70-110 20-54 (99)
403 PF12242 Eno-Rase_NADH_b: NAD( 70.8 18 0.0004 25.5 5.6 33 178-210 39-73 (78)
404 KOG1099 SAM-dependent methyltr 70.8 6.5 0.00014 34.0 4.0 66 178-257 42-124 (294)
405 KOG2907 RNA polymerase I trans 70.7 2.9 6.4E-05 31.5 1.7 42 68-109 71-113 (116)
406 PRK07677 short chain dehydroge 70.5 30 0.00065 29.5 8.5 73 179-257 2-87 (252)
407 PRK05867 short chain dehydroge 70.5 28 0.00062 29.7 8.3 78 177-260 8-98 (253)
408 KOG3507 DNA-directed RNA polym 70.4 3.1 6.7E-05 27.5 1.6 31 68-108 17-47 (62)
409 PRK06139 short chain dehydroge 70.2 30 0.00065 31.4 8.7 77 177-259 6-95 (330)
410 COG0569 TrkA K+ transport syst 70.2 22 0.00048 30.5 7.4 66 180-255 2-73 (225)
411 COG3677 Transposase and inacti 70.1 3 6.6E-05 32.6 1.8 40 71-114 30-69 (129)
412 PF02719 Polysacc_synt_2: Poly 69.7 7.6 0.00016 34.8 4.5 76 186-264 5-93 (293)
413 PF02254 TrkA_N: TrkA-N domain 69.7 15 0.00033 27.3 5.7 60 186-255 4-69 (116)
414 PRK00423 tfb transcription ini 69.6 3.2 7E-05 37.5 2.2 31 71-109 11-41 (310)
415 PRK05854 short chain dehydroge 69.2 49 0.0011 29.6 9.8 80 177-260 13-105 (313)
416 PF14354 Lar_restr_allev: Rest 69.1 3.7 8E-05 27.3 1.9 33 71-106 3-37 (61)
417 PF08273 Prim_Zn_Ribbon: Zinc- 69.1 3 6.4E-05 25.6 1.2 28 73-106 5-34 (40)
418 COG4306 Uncharacterized protei 69.1 2.9 6.4E-05 32.2 1.5 44 69-112 37-82 (160)
419 PF08996 zf-DNA_Pol: DNA Polym 69.0 2.6 5.5E-05 35.3 1.3 39 71-109 18-56 (188)
420 PRK06172 short chain dehydroge 68.6 36 0.00078 29.0 8.5 75 178-258 7-94 (253)
421 PF09723 Zn-ribbon_8: Zinc rib 68.6 2.8 6.1E-05 25.8 1.1 31 70-106 4-34 (42)
422 PRK07035 short chain dehydroge 68.5 35 0.00076 29.0 8.4 75 178-258 8-95 (252)
423 PRK06124 gluconate 5-dehydroge 68.4 37 0.00081 28.9 8.6 76 177-258 10-98 (256)
424 COG4017 Uncharacterized protei 68.4 26 0.00056 29.5 6.9 93 168-278 35-132 (254)
425 PRK07890 short chain dehydroge 68.3 38 0.00083 28.8 8.6 75 178-258 5-92 (258)
426 PF04072 LCM: Leucine carboxyl 68.3 15 0.00032 30.3 5.8 95 167-262 67-171 (183)
427 COG4627 Uncharacterized protei 68.0 0.86 1.9E-05 36.8 -1.7 54 231-284 30-95 (185)
428 PRK03976 rpl37ae 50S ribosomal 67.9 3.1 6.6E-05 30.3 1.3 30 71-109 36-65 (90)
429 KOG3924 Putative protein methy 67.7 8.1 0.00018 36.0 4.3 93 166-259 181-283 (419)
430 PRK07454 short chain dehydroge 67.4 46 0.001 28.0 8.9 75 178-259 6-94 (241)
431 cd00350 rubredoxin_like Rubred 66.9 4.1 8.9E-05 23.6 1.5 24 72-106 2-25 (33)
432 KOG1201 Hydroxysteroid 17-beta 66.6 37 0.00081 30.5 8.1 78 177-261 37-127 (300)
433 PRK09424 pntA NAD(P) transhydr 66.5 16 0.00035 35.4 6.3 45 175-220 162-207 (509)
434 KOG2811 Uncharacterized conser 66.4 11 0.00025 34.7 4.9 63 177-243 182-247 (420)
435 PF12773 DZR: Double zinc ribb 66.3 4.9 0.00011 25.4 2.0 29 70-108 11-39 (50)
436 PF06044 DRP: Dam-replacing fa 65.8 2.9 6.3E-05 36.1 1.0 37 69-111 29-66 (254)
437 PRK07063 short chain dehydroge 65.7 42 0.00091 28.7 8.4 78 178-259 7-97 (260)
438 KOG0022 Alcohol dehydrogenase, 65.4 19 0.00042 32.7 6.0 48 173-220 188-236 (375)
439 COG1996 RPC10 DNA-directed RNA 65.2 4.4 9.4E-05 26.0 1.5 30 70-108 5-34 (49)
440 TIGR00561 pntA NAD(P) transhyd 65.1 29 0.00063 33.7 7.7 42 176-219 162-205 (511)
441 COG2051 RPS27A Ribosomal prote 65.1 4.4 9.6E-05 27.6 1.6 42 64-113 12-53 (67)
442 COG1062 AdhC Zn-dependent alco 65.1 25 0.00054 32.3 6.8 54 167-220 175-229 (366)
443 PF05129 Elf1: Transcription e 64.8 2 4.4E-05 30.7 -0.1 39 70-111 21-59 (81)
444 PRK09291 short chain dehydroge 64.8 46 0.00099 28.3 8.5 74 179-258 3-83 (257)
445 PF09526 DUF2387: Probable met 64.6 3.8 8.2E-05 28.5 1.2 36 71-113 8-45 (71)
446 PRK00241 nudC NADH pyrophospha 64.4 4.6 9.9E-05 35.5 2.0 35 67-110 95-129 (256)
447 PRK08339 short chain dehydroge 64.2 52 0.0011 28.5 8.7 77 177-258 7-95 (263)
448 PRK05876 short chain dehydroge 64.1 52 0.0011 28.7 8.8 76 178-259 6-94 (275)
449 COG1594 RPB9 DNA-directed RNA 64.0 6.7 0.00015 29.9 2.6 36 71-113 2-37 (113)
450 PRK08217 fabG 3-ketoacyl-(acyl 64.0 50 0.0011 27.8 8.5 76 177-258 4-92 (253)
451 cd08237 ribitol-5-phosphate_DH 63.7 17 0.00037 33.0 5.7 45 175-219 161-207 (341)
452 PRK12380 hydrogenase nickel in 63.7 4.4 9.6E-05 30.9 1.6 34 64-108 63-96 (113)
453 TIGR01053 LSD1 zinc finger dom 63.4 6.1 0.00013 22.7 1.7 27 72-107 2-28 (31)
454 PRK07478 short chain dehydroge 63.4 53 0.0011 28.0 8.6 75 178-258 6-93 (254)
455 PRK07814 short chain dehydroge 63.3 53 0.0011 28.3 8.6 75 177-257 9-96 (263)
456 PRK12826 3-ketoacyl-(acyl-carr 63.3 57 0.0012 27.4 8.7 76 178-259 6-94 (251)
457 COG1086 Predicted nucleoside-d 63.2 42 0.00091 32.9 8.3 83 178-264 250-341 (588)
458 TIGR03831 YgiT_finger YgiT-typ 63.2 5.8 0.00013 24.4 1.8 14 97-110 31-44 (46)
459 PRK03562 glutathione-regulated 62.8 26 0.00057 34.9 7.2 66 178-255 400-471 (621)
460 PRK08703 short chain dehydroge 62.7 69 0.0015 26.9 9.1 77 177-258 5-97 (239)
461 TIGR02443 conserved hypothetic 62.7 4.6 9.9E-05 26.9 1.3 36 70-112 8-45 (59)
462 PRK12829 short chain dehydroge 62.5 54 0.0012 28.0 8.5 75 176-258 9-96 (264)
463 PRK06113 7-alpha-hydroxysteroi 62.4 54 0.0012 28.0 8.5 75 178-258 11-98 (255)
464 PRK08862 short chain dehydroge 62.2 50 0.0011 28.0 8.1 74 178-257 5-92 (227)
465 KOG3277 Uncharacterized conser 62.0 11 0.00023 30.3 3.4 92 17-113 22-119 (165)
466 PF01488 Shikimate_DH: Shikima 62.0 13 0.00028 29.0 4.1 80 173-261 7-88 (135)
467 KOG2352 Predicted spermine/spe 61.9 5 0.00011 38.3 1.9 75 177-254 295-376 (482)
468 PRK05866 short chain dehydroge 61.9 54 0.0012 29.0 8.5 76 178-259 40-128 (293)
469 PRK07523 gluconate 5-dehydroge 61.5 56 0.0012 27.8 8.4 76 177-259 9-98 (255)
470 COG4301 Uncharacterized conser 61.5 37 0.00081 29.8 6.9 83 176-261 77-167 (321)
471 PRK03659 glutathione-regulated 61.4 18 0.00039 35.9 5.8 64 179-254 401-470 (601)
472 cd04476 RPA1_DBD_C RPA1_DBD_C: 60.9 7.7 0.00017 31.5 2.6 31 68-108 31-61 (166)
473 PRK08643 acetoin reductase; Va 60.9 58 0.0013 27.7 8.4 75 178-258 2-89 (256)
474 PRK00415 rps27e 30S ribosomal 60.7 6.9 0.00015 26.1 1.8 39 67-113 7-45 (59)
475 TIGR02605 CxxC_CxxC_SSSS putat 60.7 5.3 0.00011 25.6 1.3 32 70-107 4-35 (52)
476 PRK06194 hypothetical protein; 60.6 62 0.0013 28.1 8.7 76 178-259 6-94 (287)
477 TIGR03206 benzo_BadH 2-hydroxy 60.5 62 0.0014 27.3 8.5 75 178-258 3-90 (250)
478 cd00401 AdoHcyase S-adenosyl-L 60.4 35 0.00076 32.2 7.2 52 166-219 189-243 (413)
479 PF03811 Zn_Tnp_IS1: InsA N-te 60.4 10 0.00022 22.6 2.4 29 72-105 6-36 (36)
480 PRK14811 formamidopyrimidine-D 60.2 5.2 0.00011 35.4 1.6 31 73-110 237-267 (269)
481 PF09986 DUF2225: Uncharacteri 60.1 5.8 0.00013 33.9 1.8 14 96-109 46-59 (214)
482 PRK08665 ribonucleotide-diphos 60.1 5 0.00011 40.9 1.7 23 73-106 726-748 (752)
483 PRK05786 fabG 3-ketoacyl-(acyl 60.0 63 0.0014 27.1 8.4 58 178-242 5-65 (238)
484 PRK00564 hypA hydrogenase nick 59.9 6.5 0.00014 30.2 1.9 36 64-109 64-99 (117)
485 PRK07097 gluconate 5-dehydroge 59.8 62 0.0014 27.8 8.4 77 177-259 9-98 (265)
486 PF01783 Ribosomal_L32p: Ribos 59.8 7 0.00015 25.7 1.8 27 70-111 25-51 (56)
487 TIGR00515 accD acetyl-CoA carb 59.7 3.2 6.9E-05 37.1 0.2 32 71-110 26-57 (285)
488 PRK09072 short chain dehydroge 59.5 62 0.0013 27.7 8.4 76 178-260 5-92 (263)
489 PRK13394 3-hydroxybutyrate deh 59.4 62 0.0013 27.5 8.3 77 178-260 7-96 (262)
490 PRK08589 short chain dehydroge 59.2 72 0.0016 27.6 8.8 76 177-259 5-93 (272)
491 COG1592 Rubrerythrin [Energy p 58.6 7.1 0.00015 31.9 2.0 25 71-107 134-158 (166)
492 KOG1253 tRNA methyltransferase 58.6 4.9 0.00011 38.4 1.2 77 176-254 108-189 (525)
493 PRK05978 hypothetical protein; 58.6 7.5 0.00016 31.2 2.1 32 71-111 33-65 (148)
494 PRK10669 putative cation:proto 58.5 28 0.0006 34.1 6.5 64 179-254 418-487 (558)
495 PF03721 UDPG_MGDP_dh_N: UDP-g 58.3 21 0.00045 29.7 4.8 38 180-219 2-41 (185)
496 COG0777 AccD Acetyl-CoA carbox 58.3 3.9 8.4E-05 36.0 0.4 31 72-110 29-59 (294)
497 KOG4218 Nuclear hormone recept 58.2 5 0.00011 36.4 1.1 27 74-110 18-44 (475)
498 PRK03824 hypA hydrogenase nick 58.2 5.9 0.00013 31.2 1.5 42 67-108 66-117 (135)
499 PHA02768 hypothetical protein; 58.2 3.4 7.4E-05 27.2 0.1 45 71-116 5-49 (55)
500 KOG1371 UDP-glucose 4-epimeras 58.1 40 0.00087 30.7 6.8 80 178-260 2-89 (343)
No 1
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=1.3e-24 Score=192.90 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=137.7
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHH
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w 150 (288)
+|+||+|+.+|... ...|.|.++|+++..++||+++++.......... -..+++. -
T Consensus 2 ~~~CP~C~~~l~~~-----------~~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~-----------a 57 (272)
T PRK11088 2 SYQCPLCHQPLTLE-----------ENSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQ-----------A 57 (272)
T ss_pred cccCCCCCcchhcC-----------CCEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHH-----------H
Confidence 48899999999653 3679999999999999999999974332221111 0011222 2
Q ss_pred hhhhhcCCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHhcC
Q 023034 151 RQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES 225 (288)
Q Consensus 151 r~~~~~~g~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~l~~A~~~~~~~~ 225 (288)
|+.|++.|++.+..+ .+.+.+.+. ....+|||||||+|.++..+++..+. ..++|+|+|+.|++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 556666777766554 233444443 34578999999999999999876542 3799999999999999876
Q ss_pred CCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---ceEEEEecCcccHHHHHhh
Q 023034 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV---GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 226 g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l---G~lvi~t~~~~~l~el~~~ 287 (288)
..++.+.++|+.++|+++++||+|++......+.+..++| |.|++.++.+.++.+|++.
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAPCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecCCCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 4578899999999999999999999987755555555566 9999999999999998753
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=1.9e-22 Score=173.25 Aligned_cols=143 Identities=27% Similarity=0.371 Sum_probs=122.9
Q ss_pred eeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHH
Q 023034 115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194 (288)
Q Consensus 115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~ 194 (288)
+.-.+++.++.||.. |+++|++.++.|++.++ ..+...+|.+|||||||||.++..
T Consensus 13 v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~ 68 (238)
T COG2226 13 VQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALL 68 (238)
T ss_pred HHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHH
Confidence 344566777889887 89999999999999653 344444799999999999999999
Q ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc------
Q 023034 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV------ 268 (288)
Q Consensus 195 l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l------ 268 (288)
+++....++|+|+|+|++|++.|++++...+ ..++.|+++|+++|||+|++||+|++.++|++++|++++|
T Consensus 69 ~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RV 145 (238)
T COG2226 69 LAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV 145 (238)
T ss_pred HHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHh
Confidence 9999767899999999999999999988762 3449999999999999999999999999999999999999
Q ss_pred ----ceEEEEecCcccHHHH
Q 023034 269 ----GVFFQVTLIIHVVEDL 284 (288)
Q Consensus 269 ----G~lvi~t~~~~~l~el 284 (288)
|++++..+.......+
T Consensus 146 lKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 146 LKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred hcCCeEEEEEEcCCCCchhh
Confidence 8888888877655444
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=2.6e-21 Score=167.35 Aligned_cols=141 Identities=23% Similarity=0.395 Sum_probs=81.2
Q ss_pred CeeeeeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHH
Q 023034 113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192 (288)
Q Consensus 113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~ 192 (288)
.++.-+++..++.||.. |..++++.++.||+..+ +.+...++.+|||+|||||.++
T Consensus 7 ~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~~ 62 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDVT 62 (233)
T ss_dssp ---------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHHH
T ss_pred HHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHHH
Confidence 44556778888999987 88999999999999543 3445566889999999999999
Q ss_pred HHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc---
Q 023034 193 RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV--- 268 (288)
Q Consensus 193 ~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l--- 268 (288)
..+++. ++.++|+|+|+|++|++.|++++...+ ..+++++++|++++|+++++||+|++.+++++++|+.+++
T Consensus 63 ~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~ 139 (233)
T PF01209_consen 63 RELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREM 139 (233)
T ss_dssp HHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred HHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence 999887 556799999999999999999988762 4599999999999999999999999999999999999888
Q ss_pred -------ceEEEEecCccc
Q 023034 269 -------GVFFQVTLIIHV 280 (288)
Q Consensus 269 -------G~lvi~t~~~~~ 280 (288)
|++++..+....
T Consensus 140 ~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-S
T ss_pred HHHcCCCeEEEEeeccCCC
Confidence 888888876543
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=2.8e-18 Score=151.30 Aligned_cols=139 Identities=18% Similarity=0.262 Sum_probs=107.6
Q ss_pred eccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 023034 118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197 (288)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~ 197 (288)
.++..+..||.. +..++.+.++.|++.. .+++...++.+|||+|||+|.++..+++
T Consensus 38 ~f~~~A~~YD~~---------~~~~s~g~~~~~r~~~---------------~~~~~~~~~~~VLDlGcGtG~~~~~la~ 93 (261)
T PLN02233 38 LFNRIAPVYDNL---------NDLLSLGQHRIWKRMA---------------VSWSGAKMGDRVLDLCCGSGDLAFLLSE 93 (261)
T ss_pred HHHHhhhHHHHh---------hhhhcCChhHHHHHHH---------------HHHhCCCCCCEEEEECCcCCHHHHHHHH
Confidence 344555667654 4445556666677643 2344555688999999999999999888
Q ss_pred h-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc--------
Q 023034 198 S-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV-------- 268 (288)
Q Consensus 198 ~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l-------- 268 (288)
. ++.++|+|+|+|++|++.|+++..........++.++++|++++|+++++||+|++.++++|++++..++
T Consensus 94 ~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk 173 (261)
T PLN02233 94 KVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK 173 (261)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC
Confidence 6 4556999999999999999987542100123579999999999999999999999999999999998888
Q ss_pred --ceEEEEecCccc
Q 023034 269 --GVFFQVTLIIHV 280 (288)
Q Consensus 269 --G~lvi~t~~~~~ 280 (288)
|.+++.++...+
T Consensus 174 pGG~l~i~d~~~~~ 187 (261)
T PLN02233 174 PGSRVSILDFNKST 187 (261)
T ss_pred cCcEEEEEECCCCC
Confidence 999999887644
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.7e-17 Score=140.79 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=118.5
Q ss_pred eeccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHH
Q 023034 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196 (288)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~ 196 (288)
-+++..+..||.+ |+.++.+.++.|+..+ ...+.+.++.++||++||||..+..+.
T Consensus 64 ~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 64 HVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRIL 119 (296)
T ss_pred HHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHH
Confidence 3556667778887 8999999999998755 467888889999999999999998888
Q ss_pred HhCCC------CEEEEEeCCHHHHHHHHHHHHhcCCC-CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc-
Q 023034 197 KSGLF------SLVVALDYSENMLKQCYEFVQQESNF-PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV- 268 (288)
Q Consensus 197 ~~~~~------~~v~gvD~s~~~l~~A~~~~~~~~g~-~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l- 268 (288)
+.... .+|+++|+|+.||..++++.++. +. ....+.|+++|+++|||++.+||+.++.+.|..++++++++
T Consensus 120 ~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~ 198 (296)
T KOG1540|consen 120 RHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALR 198 (296)
T ss_pred HhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHH
Confidence 87543 79999999999999999998654 22 22348999999999999999999999999999999999999
Q ss_pred ---------ceEEEEecCccc
Q 023034 269 ---------GVFFQVTLIIHV 280 (288)
Q Consensus 269 ---------G~lvi~t~~~~~ 280 (288)
|+|.+-.|..-.
T Consensus 199 EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 199 EAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHhcCCCcEEEEEEccccc
Confidence 899888886544
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.70 E-value=1.7e-17 Score=140.63 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||||||-|.++..+++.|. .|+|+|+++.+++.|+.+.... ...+++.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence 3689999999999999999999997 9999999999999999988776 456778888888887766899999999
Q ss_pred cccccCCCccccc----------ceEEEEecCcccH
Q 023034 256 AAIHCWSSPSTGV----------GVFFQVTLIIHVV 281 (288)
Q Consensus 256 ~vl~h~~d~~~~l----------G~lvi~t~~~~~l 281 (288)
.||||++||+.++ |.++++|+...-.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 9999999999877 9999999885443
No 7
>PRK05785 hypothetical protein; Provisional
Probab=99.69 E-value=5.1e-17 Score=140.28 Aligned_cols=116 Identities=30% Similarity=0.367 Sum_probs=91.3
Q ss_pred ccCCCCCcCcCCchhhhhhcCcchhhhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh
Q 023034 119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198 (288)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~ 198 (288)
++..+..||.. +..++++.+..|++..+ +.+..... ++.+|||||||||.++..+++.
T Consensus 15 f~~iA~~YD~~---------n~~~s~g~~~~wr~~~~-----------~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 15 YNKIPKAYDRA---------NRFISFNQDVRWRAELV-----------KTILKYCG--RPKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred HHhhhHHHHHh---------hhhccCCCcHHHHHHHH-----------HHHHHhcC--CCCeEEEEcCCCCHHHHHHHHh
Confidence 33445556654 55566677777887553 33333333 3679999999999999999988
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc
Q 023034 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 199 ~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l 268 (288)
. ..+|+|+|+|++|++.|+++ ..++++|++.+|+++++||+|++.++++|++|+.+++
T Consensus 73 ~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 73 F-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred c-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 5 34999999999999999864 1357899999999999999999999999999998888
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=2.2e-16 Score=136.65 Aligned_cols=112 Identities=24% Similarity=0.316 Sum_probs=93.5
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023034 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (288)
Q Consensus 169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (288)
+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|++++... + ..++.++.+|+..++++++
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-G--LHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-C--CCceEEEEechhcCCCCCC
Confidence 445566667899999999999999999887 45569999999999999999998765 1 4679999999999998889
Q ss_pred ccceEEeccccccCCCccccc----------ceEEEEecCcccHHH
Q 023034 248 SIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVED 283 (288)
Q Consensus 248 sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~e 283 (288)
+||+|++..+++|++++..++ |.+++.+........
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 159 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPG 159 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence 999999999999999987766 888887765544433
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.68 E-value=3.1e-16 Score=137.46 Aligned_cols=111 Identities=28% Similarity=0.377 Sum_probs=96.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+.+.+...++.+|||+|||+|.++..+.+.+. +|+|+|+|+.|++.|+++. ....++++|++.+|+++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCCC
Confidence 4556666655678999999999999999988765 9999999999999999862 23468899999999999
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~ 287 (288)
++||+|+++.++++.+++..++ |.++++++..+++.++++.
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 9999999999999999998877 9999999999999998754
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=6.6e-16 Score=141.19 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=91.4
Q ss_pred HHHHhhcCC-----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 167 ELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 167 ~~l~~~l~~-----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
+.+.+.+.. .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.+..+ ...++.++++|+.+
T Consensus 103 ~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~ 179 (340)
T PLN02244 103 EESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALN 179 (340)
T ss_pred HHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCccc
Confidence 344455544 567899999999999999999874 3599999999999999999887651 23579999999999
Q ss_pred CCCCCCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 242 LPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 242 lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
+|+++++||+|++..+++|++|+..++ |.|++.++.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999999999999987777 999998764
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.63 E-value=8.4e-16 Score=138.73 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.|+++.... ....++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3577999999999999999998765 9999999999999999886553 11357999999999999888999999999
Q ss_pred cccccCCCccccc----------ceEEEEecCcc
Q 023034 256 AAIHCWSSPSTGV----------GVFFQVTLIIH 279 (288)
Q Consensus 256 ~vl~h~~d~~~~l----------G~lvi~t~~~~ 279 (288)
++|+|++|+..++ |.++++++...
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999888 99999987654
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=1.4e-15 Score=112.26 Aligned_cols=80 Identities=30% Similarity=0.522 Sum_probs=68.5
Q ss_pred EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccC
Q 023034 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261 (288)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~ 261 (288)
||+|||+|..+..+++. +..+|+|+|+++.|++.++++.... ++.+..+|++++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 3359999999999999999986543 5669999999999999999999999999999
Q ss_pred CCccccc
Q 023034 262 SSPSTGV 268 (288)
Q Consensus 262 ~d~~~~l 268 (288)
+++..++
T Consensus 74 ~~~~~~l 80 (95)
T PF08241_consen 74 EDPEAAL 80 (95)
T ss_dssp SHHHHHH
T ss_pred cCHHHHH
Confidence 8887777
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=2.6e-15 Score=121.64 Aligned_cols=97 Identities=20% Similarity=0.379 Sum_probs=84.7
Q ss_pred CCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~ 253 (288)
.+.+|||+|||+|.++..++ +.++..+++|+|+|+.|++.|+++++..+ ..++.++++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 47899999999999999999 45667899999999999999999988762 458999999999987 55 8999999
Q ss_pred eccccccCCCccccc----------ceEEEEecC
Q 023034 254 AGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 254 ~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
+..+++|+.++..++ |.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999998777 888888776
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=3.9e-15 Score=130.92 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=90.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (288)
+.+.+.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+ ...++.++++|+.+++ +.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhc
Confidence 34555554 3467999999999999999999876 99999999999999999987751 2357899999998764 56
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV 280 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~ 280 (288)
+++||+|++..+++|+++|..++ |.+++..+..+.
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 78999999999999999998777 888877666543
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.59 E-value=7.7e-15 Score=129.57 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC
Q 023034 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (288)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~ 239 (288)
++.....+.++..+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++... ..++.+..+|+
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence 3444556777788888889999999999999999887753 35999999999999999987543 25799999999
Q ss_pred CCCCCCCCccceEEeccccccCC--Cccccc----------ceEEEEecCc
Q 023034 240 SRLPFASSSIDAVHAGAAIHCWS--SPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 240 ~~lp~~~~sfD~V~~~~vl~h~~--d~~~~l----------G~lvi~t~~~ 278 (288)
...|+++++||+|++..+++|++ ++..++ |.|++..+..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999999999999999999986 555555 9999887744
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=6.5e-15 Score=129.46 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=84.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+++.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++ ++.++++|+++++ ++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CC
Confidence 345666666678999999999999999999987667999999999999999763 5778999998875 56
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
++||+|++..++||++++..++ |.+++..+.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 7999999999999999988777 888887543
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=1.2e-14 Score=111.20 Aligned_cols=96 Identities=25% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC-CCCCCCCCccceEEec
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 255 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~ 255 (288)
|+.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++... ....++.++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 478999999999999999999655569999999999999999998443 2368999999999 33332 3569999999
Q ss_pred c-ccccCCC---ccccc----------ceEEEEe
Q 023034 256 A-AIHCWSS---PSTGV----------GVFFQVT 275 (288)
Q Consensus 256 ~-vl~h~~d---~~~~l----------G~lvi~t 275 (288)
. +++++.. ..+++ |++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 5554433 23333 8877765
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=3e-14 Score=129.19 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=88.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
++.+..++....+.+|||||||+|.++..+++.++ ..|+|+|+|+.|+..++...... ....++.++.+|++++|+
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC-
Confidence 35566677666789999999999999999999876 36999999999997665432221 013579999999999998
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
+++||+|++..+++|+.++..++ |.+++.++.
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 78999999999999999998887 889887653
No 19
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.55 E-value=4.3e-14 Score=120.13 Aligned_cols=93 Identities=11% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|+++ ..++.+.++|+.+ |+++++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 46789999999999999998875556999999999999999986 2456788999888 88899999999999
Q ss_pred ccccCCC--ccccc--------ceEEEEecCc
Q 023034 257 AIHCWSS--PSTGV--------GVFFQVTLII 278 (288)
Q Consensus 257 vl~h~~d--~~~~l--------G~lvi~t~~~ 278 (288)
+|+|++. ...++ +.+++..+..
T Consensus 114 vL~hl~p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 9999952 12223 6677766543
No 20
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.55 E-value=5e-15 Score=126.58 Aligned_cols=97 Identities=25% Similarity=0.393 Sum_probs=80.4
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC-C----CEEEEEecCCCCCCCCCccceE
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-E----NFLLVRADISRLPFASSSIDAV 252 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~-~----~i~~~~~d~~~lp~~~~sfD~V 252 (288)
|.+|||+|||+|.++..|++.|. +|+|+|+++.|++.|+++.... ... . ++.+.+.|++.+. +.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~d--P~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMD--PVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcC--chhccccceeeehhhcchhhcc---ccccee
Confidence 57899999999999999999997 9999999999999999994432 111 1 3556777777663 459999
Q ss_pred EeccccccCCCccccc----------ceEEEEecCcccH
Q 023034 253 HAGAAIHCWSSPSTGV----------GVFFQVTLIIHVV 281 (288)
Q Consensus 253 ~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l 281 (288)
+|..++||+.||..++ |.++++|....-+
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTIL 201 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence 9999999999999988 9999999876443
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=7.8e-14 Score=133.18 Aligned_cols=109 Identities=19% Similarity=0.162 Sum_probs=93.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
+.+.+.+.+...++.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|+++.... ..++.+.++|+..+++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 45667777766678899999999999999888764 359999999999999999876543 4578999999999998
Q ss_pred CCCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023034 245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~ 278 (288)
++++||+|++..+++|++++..++ |.+++.++..
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 889999999999999999998887 9999887643
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=5e-14 Score=121.86 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=91.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++ ..++.++.+|+.+.++++++||+|++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence 357899999999999999999988778999999999999998863 2367899999999998889999999999
Q ss_pred ccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023034 257 AIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 257 vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
+++|+.++...+ |.+++.++..+++.++.+
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~ 146 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQ 146 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHH
Confidence 999999988777 999999998888877654
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=8.6e-14 Score=122.46 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=85.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.++..+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++ ..++.++.+|+..+. ++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence 455566666678899999999999999999887667999999999999999986 356789999998765 35
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEec
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL 276 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~ 276 (288)
++||+|+++.+++|++++..++ |.+++..+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 6899999999999999987777 88877653
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.52 E-value=8.9e-14 Score=125.11 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+..++...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+.+++...+.. ....++.+...+++++|..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence 4566677667789999999999999999888876 47999999999998754322211 0135788888999988864
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
.+||+|++..+++|+++|..++ |.|++.++.
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 5899999999999999998888 999988753
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.8e-13 Score=119.92 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+..++|.+|||||||.|.++.++++.. +.+|+|+++|+++.+.+++++...+ ...++++...|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence 4677888899999999999999999999999996 3699999999999999999999882 2358999999988875
Q ss_pred CCccceEEeccccccCCC--ccccc----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSS--PSTGV----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d--~~~~l----------G~lvi~t~~~ 278 (288)
+.||.|++..++||+.. -..++ |++++-++..
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 44999999999999976 33343 8888877654
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=1.2e-13 Score=116.78 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=75.3
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (288)
.+.+.+...++.+|||+|||+|.++..+++++. +|+|+|+|+.|++.+++++... + ..++.+..+|+..++++ +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE-N--LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCcceEEecChhhCCcC-C
Confidence 344455555678999999999999999999876 9999999999999999988775 2 34688899999888774 6
Q ss_pred ccceEEeccccccCCC
Q 023034 248 SIDAVHAGAAIHCWSS 263 (288)
Q Consensus 248 sfD~V~~~~vl~h~~d 263 (288)
+||+|++..+++|++.
T Consensus 95 ~fD~I~~~~~~~~~~~ 110 (197)
T PRK11207 95 EYDFILSTVVLMFLEA 110 (197)
T ss_pred CcCEEEEecchhhCCH
Confidence 7999999999998863
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.51 E-value=2.3e-13 Score=117.55 Aligned_cols=106 Identities=27% Similarity=0.350 Sum_probs=90.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..++++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence 345566666778999999999999999998875 5679999999999999999873332 46789999999998888
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEec
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL 276 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~ 276 (288)
+++||+|++..+++|++++..++ |.+++..+
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 89999999999999999998877 88887764
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=2.1e-13 Score=118.16 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=79.4
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sf 249 (288)
...++.+|||||||+|.++..+++. ++..+|+|+|+|+.|++.|+++... .++.+...+...+++.+++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence 3345789999999999998887753 5556999999999999999987432 35667777877777778899
Q ss_pred ceEEeccccccCCCcc--ccc--------ceEEEEecCcc
Q 023034 250 DAVHAGAAIHCWSSPS--TGV--------GVFFQVTLIIH 279 (288)
Q Consensus 250 D~V~~~~vl~h~~d~~--~~l--------G~lvi~t~~~~ 279 (288)
|+|+++.++||+++++ .++ |.+++.++...
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~ 170 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRS 170 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccC
Confidence 9999999999999864 344 77777776654
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.47 E-value=1.5e-13 Score=113.52 Aligned_cols=100 Identities=16% Similarity=0.337 Sum_probs=84.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C-C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l-p 243 (288)
.+.+.+++.+ +.+|||+|||.|.++..|.+. .+.+.+|+|++++.+..+.++ .+.++++|+.+ + .
T Consensus 4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLAD 70 (193)
T ss_pred HHHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhh
Confidence 3567777765 899999999999999999886 346999999999999888875 56789999984 4 4
Q ss_pred CCCCccceEEeccccccCCCccccc------ceEEEEecCc
Q 023034 244 FASSSIDAVHAGAAIHCWSSPSTGV------GVFFQVTLII 278 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~~d~~~~l------G~lvi~t~~~ 278 (288)
|++++||.|+.+.+|+++.+|+.+| |+-++.+|..
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence 8999999999999999999999999 6555555543
No 30
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.47 E-value=9.8e-13 Score=110.11 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=66.9
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
+.+|||||||+|..+..+++..+..+|+|+|+++.|++.|+++++.. + ..++.++.+|+.+++. +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-~--l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-G--LKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-C--CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 78999999999999999988776779999999999999999998887 2 3459999999998877 78999999975
No 31
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=6.2e-13 Score=116.42 Aligned_cols=98 Identities=13% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~ 253 (288)
.++.+|||||||+|..+..+++. .++.+++|+|+|+.|++.|++++...+ ...++.++++|+.+++++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCCC--CCCEEe
Confidence 35789999999999999888873 456799999999999999999987651 234799999999988764 499999
Q ss_pred eccccccCCCcc--ccc----------ceEEEEecC
Q 023034 254 AGAAIHCWSSPS--TGV----------GVFFQVTLI 277 (288)
Q Consensus 254 ~~~vl~h~~d~~--~~l----------G~lvi~t~~ 277 (288)
++.++||+++.+ .++ |.|++++..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999997543 333 888888743
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=4.8e-13 Score=118.68 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceE
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V 252 (288)
...++.+|||||||+|..+..+++. ++..+|+|+|+++.|++.|+++.... + ..++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-g--~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-G--YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-C--CCCEEEEEcchhhCCCCCCceeEE
Confidence 3456899999999999988776665 55568999999999999999988765 2 358899999999999988999999
Q ss_pred EeccccccCCCccccc----------ceEEEEecC
Q 023034 253 HAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 253 ~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
+++.+++|+++...++ |+++++.+.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999999887766 899887653
No 33
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=1.1e-13 Score=104.38 Aligned_cols=80 Identities=29% Similarity=0.448 Sum_probs=66.3
Q ss_pred EEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec-c
Q 023034 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A 256 (288)
Q Consensus 181 VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~-~ 256 (288)
|||+|||+|..+..+.+.. +..+++|+|+|+.|++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 3469999999999999999998765 348999999999999888999999994 5
Q ss_pred ccccCCCc
Q 023034 257 AIHCWSSP 264 (288)
Q Consensus 257 vl~h~~d~ 264 (288)
+++|+.+.
T Consensus 77 ~~~~~~~~ 84 (101)
T PF13649_consen 77 SLHHLSPE 84 (101)
T ss_dssp GGGGSSHH
T ss_pred ccCCCCHH
Confidence 59998653
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.46 E-value=1.7e-13 Score=111.30 Aligned_cols=90 Identities=24% Similarity=0.410 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . .......+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45688999999999999999988887 99999999999988 1 223344444455567889999999
Q ss_pred ccccccCCCccccc----------ceEEEEecCcc
Q 023034 255 GAAIHCWSSPSTGV----------GVFFQVTLIIH 279 (288)
Q Consensus 255 ~~vl~h~~d~~~~l----------G~lvi~t~~~~ 279 (288)
+.+|+|++|+..++ |.+++.++...
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999998888 99999998753
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=4.1e-13 Score=113.37 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=73.0
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (288)
.+.+.+...++.+|||+|||+|.++..+++++. +|+|+|+|+.|++.+++++... ..++.+..+|+...+++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-C
Confidence 344555555577999999999999999999876 9999999999999999887765 23477788888766664 5
Q ss_pred ccceEEeccccccCCC
Q 023034 248 SIDAVHAGAAIHCWSS 263 (288)
Q Consensus 248 sfD~V~~~~vl~h~~d 263 (288)
+||+|++..+++|++.
T Consensus 94 ~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQA 109 (195)
T ss_pred CCCEEEEecccccCCH
Confidence 7999999999999854
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=5.5e-13 Score=118.00 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+..++|.+|||||||.|.++..++++. +++|+|+.+|+++.+.++++++.. | ...++.+...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-g-l~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-G-LEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-T-SSSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-C-CCCceEEEEeeccccCC-
Confidence 4677788888899999999999999999999994 259999999999999999999987 2 34679999999988754
Q ss_pred CCccceEEeccccccCCCc--cccc----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~~ 278 (288)
+||.|++..+++|+... ..++ |++++-++..
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 89999999999999643 3333 8888766553
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=7.8e-13 Score=120.03 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||||||+|.++..+++..+..+|+++|+|++|++.|+++... .++.++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence 357799999999999998888775446999999999999999987432 46788999999999999999999999
Q ss_pred cccccCCCccccc----------ceEEEEec
Q 023034 256 AAIHCWSSPSTGV----------GVFFQVTL 276 (288)
Q Consensus 256 ~vl~h~~d~~~~l----------G~lvi~t~ 276 (288)
.+++|++++...+ |.+++...
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999988776 88877653
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.43 E-value=7.1e-13 Score=113.49 Aligned_cols=103 Identities=23% Similarity=0.346 Sum_probs=86.9
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023034 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (288)
Q Consensus 170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s 248 (288)
...+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++.. . ..++.+..+|+.++++++++
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCCc
Confidence 33444446889999999999999999988764 689999999999999998865 2 35788999999998888889
Q ss_pred cceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 249 IDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
||+|++..+++|++++..++ |.+++.++.
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999999987776 888877653
No 39
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=9.2e-13 Score=111.11 Aligned_cols=90 Identities=16% Similarity=0.326 Sum_probs=74.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C-C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l-p 243 (288)
++.+.+.+. ++.+|||||||+|.++..+++.. ...++|+|+|+.|++.++++ ++.++++|+.+ + +
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~ 70 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEA 70 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccc
Confidence 355666665 37799999999999999987664 24789999999999998752 46788899875 4 4
Q ss_pred CCCCccceEEeccccccCCCccccc
Q 023034 244 FASSSIDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~~d~~~~l 268 (288)
+++++||+|+++.+++|++++..++
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d~~~~l 95 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRNPEEIL 95 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcCHHHHH
Confidence 7788999999999999999998887
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.42 E-value=1.3e-12 Score=108.93 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.+++++++. + ..++.++++|+.+++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-~--~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-G--LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh-C--CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 378999999999999999988777679999999999999999988776 2 346999999999875 367999999976
Q ss_pred ccccCCCccccc-------ceEEEEecCcccHHHHHh
Q 023034 257 AIHCWSSPSTGV-------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 257 vl~h~~d~~~~l-------G~lvi~t~~~~~l~el~~ 286 (288)
++++++....+ |.+++. .......++..
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~ 152 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEE 152 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHH
Confidence 66555543332 666655 56666666543
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=4.8e-13 Score=111.32 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=83.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+...+......+|.|+|||+|..+..++++.|.+.++|+|-|++|++.|+++ ..+..|..+|+.... +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence 456667777778899999999999999999999999999999999999999887 678899999999875 35
Q ss_pred CccceEEeccccccCCCccccc
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l 268 (288)
..+|+++++.+|++++|-...+
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll 112 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELL 112 (257)
T ss_pred CccchhhhhhhhhhccccHHHH
Confidence 7899999999999999987777
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=3.3e-12 Score=108.69 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=85.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
...+.+.+...++.+|||||||+|..+..+++.. ...+|+++|++++|++.|++++...+ ...++.++.+|+.+...
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc
Confidence 4566677777778999999999999999988764 24599999999999999999988761 12468999999987655
Q ss_pred CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023034 245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT 275 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t 275 (288)
..++||+|++..+++|+++.- +.| |++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence 567999999999999887432 223 7776644
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=1.4e-12 Score=112.34 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=82.3
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl 258 (288)
++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... | ...++.++.+|+...+++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-G-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-C-CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 3799999999999999998876679999999999999999998765 1 245789999999777664 589999999999
Q ss_pred ccCCCccccc----------ceEEEEecC
Q 023034 259 HCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 259 ~h~~d~~~~l----------G~lvi~t~~ 277 (288)
+|++++..++ |.+++.++.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9999987766 999988764
No 44
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.40 E-value=9.6e-13 Score=115.67 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=85.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
++++..++..-.|.+|||||||+|+++..++.+|+ ..|+|+|++.-...+.+....-. | ....+.+.-.-++++|.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~l-g-~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFL-G-QDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHh-C-CCccEEEcCcchhhccc-
Confidence 47788888777899999999999999999999987 58999999998766644322221 0 01233444356778887
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~ 278 (288)
.+.||+|++.+||.|..+|...| |.+++-|..-
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 78999999999999999998888 8999888754
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=2.9e-12 Score=115.49 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCCCEEEEEecCC
Q 023034 166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRADIS 240 (288)
Q Consensus 166 ~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g--~~~~~i~~~~~d~~ 240 (288)
++.+.+++.. .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++++..+. ....++.+..+|+.
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3444555532 2578999999999999999999876 999999999999999999765310 01246788888886
Q ss_pred CCCCCCCccceEEeccccccCCCcc
Q 023034 241 RLPFASSSIDAVHAGAAIHCWSSPS 265 (288)
Q Consensus 241 ~lp~~~~sfD~V~~~~vl~h~~d~~ 265 (288)
.+ +++||+|++..+++|+++..
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~ 229 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDK 229 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHH
Confidence 65 57899999999999998743
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.40 E-value=3.9e-12 Score=110.03 Aligned_cols=108 Identities=26% Similarity=0.344 Sum_probs=89.4
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
.+...+...++.+|||+|||+|.++..+++.++ ..+++|+|+++.+++.+++++... + ...++.++.+|+..+++..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-G-LSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-c-cccCeEEEecccccCCCCC
Confidence 344444455678999999999999999998875 579999999999999999987653 1 2357899999999988878
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEecC
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLI 277 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~ 277 (288)
++||+|++..+++|++++...+ |.+++.++.
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 8999999999999999988777 888877653
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=4e-12 Score=106.17 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=75.6
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~ 251 (288)
.+...+++++||+|||.|+.+.+|+++|. .|+++|+|+..++.+++.++.. ...+...+.|+....++ +.||+
T Consensus 25 a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 25 AVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CCcCE
Confidence 34444577999999999999999999998 9999999999999998887776 45699999999988775 68999
Q ss_pred EEeccccccCCCccc--cc----------ceEEEEec
Q 023034 252 VHAGAAIHCWSSPST--GV----------GVFFQVTL 276 (288)
Q Consensus 252 V~~~~vl~h~~d~~~--~l----------G~lvi~t~ 276 (288)
|++..|++|++.+.. .+ |.+++.++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 999999999975422 22 77777665
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.39 E-value=4.2e-12 Score=106.42 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=87.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+...+...++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++... + ..++.++.+|+. .++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-~--~~~i~~~~~d~~-~~~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-G--CGNIDIIPGEAP-IEL- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-C--CCCeEEEecCch-hhc-
Confidence 34455667666788999999999999999999887789999999999999999988776 2 346889988875 233
Q ss_pred CCccceEEeccccccCCCc----cccc---ceEEEEecCcccHHHHHh
Q 023034 246 SSSIDAVHAGAAIHCWSSP----STGV---GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~----~~~l---G~lvi~t~~~~~l~el~~ 286 (288)
.++||+|++....+++.+. .+.| |.+++......+..++.+
T Consensus 95 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~ 142 (187)
T PRK08287 95 PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALA 142 (187)
T ss_pred CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHH
Confidence 3679999998766554332 1222 888887766666666554
No 49
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=4.6e-12 Score=108.35 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
...+.+.+...++.+|||||||+|+++..+++.. ...+|+++|+++.+++.|+++++..+ ..++.++.+|+.....
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence 4566677777789999999999999999988873 44699999999999999999988762 4579999999987666
Q ss_pred CCCccceEEeccccccCCCcc-ccc---ceEEEE
Q 023034 245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQV 274 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~ 274 (288)
+.+.||+|++....++++..- +.| |++++.
T Consensus 142 ~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence 678999999998887765321 112 776664
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=2.5e-12 Score=114.97 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=69.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++++.. ..++.+...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence 355999999999999999999876 9999999999999999998776 3378888899887665 67899999999
Q ss_pred ccccCC
Q 023034 257 AIHCWS 262 (288)
Q Consensus 257 vl~h~~ 262 (288)
+++|++
T Consensus 193 vl~~l~ 198 (287)
T PRK12335 193 VLMFLN 198 (287)
T ss_pred hhhhCC
Confidence 999986
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=2.9e-12 Score=108.76 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=84.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC-CCCC--CCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~-~~lp--~~~~sfD~V~ 253 (288)
++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++... + ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-G--LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-C--CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 578999999999999999998877679999999999999999998775 1 36799999999 7666 7788999999
Q ss_pred eccccccCCC--------ccccc----------ceEEEEecCcccHHHHHh
Q 023034 254 AGAAIHCWSS--------PSTGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 254 ~~~vl~h~~d--------~~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
+.+...+... ...++ |.|++.+.......++.+
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~ 167 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLE 167 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 8765433221 11122 999999887777766654
No 52
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=107.52 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=89.8
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE-EEEecCCCCC-CCC
Q 023034 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-FAS 246 (288)
Q Consensus 169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~-~~~~d~~~lp-~~~ 246 (288)
+..++.......|||||||||....++... +..+|+++|++++|-+.|.+.+++.. ..++. |++++.+++| +++
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d 143 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD 143 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence 334555544556899999999988877533 34699999999999999999988762 56666 9999999998 899
Q ss_pred CccceEEeccccccCCCccccc----------ceEEEEecCccc
Q 023034 247 SSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHV 280 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~ 280 (288)
+++|+|++..+|..+.||.+.| |++++.....+.
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 9999999999999999999998 999998877644
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.38 E-value=5.1e-12 Score=108.01 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=79.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCEEEEE
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVR 236 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------g~~~~~i~~~~ 236 (288)
+..+...+...++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+...... -....++++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 33333333323578999999999999999999998 99999999999998654321100 00134689999
Q ss_pred ecCCCCCCC-CCccceEEeccccccCCCcccc--c----------ceEEEEecC
Q 023034 237 ADISRLPFA-SSSIDAVHAGAAIHCWSSPSTG--V----------GVFFQVTLI 277 (288)
Q Consensus 237 ~d~~~lp~~-~~sfD~V~~~~vl~h~~d~~~~--l----------G~lvi~t~~ 277 (288)
+|+.+++.. .+.||.|+...+++|++...+. + |++++.++.
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 999988743 4679999999999999754432 1 777777664
No 54
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.38 E-value=3.1e-12 Score=111.37 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=79.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
++.+|||||||+|.++..+++.. ++.+++|+|+|+.|++.|+++++..+ ...++.++++|+..++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence 57799999999999999998863 56799999999999999999987641 135789999999998865 5899999
Q ss_pred ccccccCCCc--cccc----------ceEEEEecC
Q 023034 255 GAAIHCWSSP--STGV----------GVFFQVTLI 277 (288)
Q Consensus 255 ~~vl~h~~d~--~~~l----------G~lvi~t~~ 277 (288)
..+++|+++. ..++ |.++++...
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 9999999753 3343 888888753
No 55
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.37 E-value=5e-12 Score=108.59 Aligned_cols=89 Identities=28% Similarity=0.414 Sum_probs=73.9
Q ss_pred HHHhhcC--CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 168 LMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 168 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+++. ..++.+|||||||+|.++..+++.+. +++|+|+|+.|++.|++++...+ ...++.+.++|+..++
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC--
Confidence 3444444 34588999999999999999998765 99999999999999999987651 1247999999998876
Q ss_pred CCccceEEeccccccCCC
Q 023034 246 SSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d 263 (288)
++||+|++..+++|++.
T Consensus 118 -~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPA 134 (219)
T ss_pred -CCcCEEEEhhHHHhCCH
Confidence 78999999999999864
No 56
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.37 E-value=7.3e-14 Score=104.74 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=54.7
Q ss_pred EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-C-CCCccceEEeccccc
Q 023034 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F-ASSSIDAVHAGAAIH 259 (288)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~-~~~sfD~V~~~~vl~ 259 (288)
||||||+|.++..+.+..+..+++|+|+|+.|++.|++++.... .........+..+.. . ..++||+|++.+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777799999999999999999888762 233444444433332 1 125999999999999
Q ss_pred cCCCccccc
Q 023034 260 CWSSPSTGV 268 (288)
Q Consensus 260 h~~d~~~~l 268 (288)
|++++..++
T Consensus 78 ~l~~~~~~l 86 (99)
T PF08242_consen 78 HLEDIEAVL 86 (99)
T ss_dssp --S-HHHHH
T ss_pred hhhhHHHHH
Confidence 998887766
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=8.7e-12 Score=96.72 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~ 245 (288)
..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.++++++..+ ..++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence 34455566556789999999999999999998766799999999999999999887762 3478888888775 3333
Q ss_pred CCccceEEeccccccCCC----ccccc---ceEEEEec
Q 023034 246 SSSIDAVHAGAAIHCWSS----PSTGV---GVFFQVTL 276 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d----~~~~l---G~lvi~t~ 276 (288)
..+||+|++....++... ..+.| |.+++..+
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999876655321 11122 77777654
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=8e-12 Score=107.11 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=85.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+ ..++.++.+|+.+...
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCc
Confidence 45666777777899999999999999999998854 3579999999999999999998872 4679999999987654
Q ss_pred CCCccceEEeccccccCCCc-cccc---ceEEEEe
Q 023034 245 ASSSIDAVHAGAAIHCWSSP-STGV---GVFFQVT 275 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~t 275 (288)
..++||+|++.....++++. .+.| |++++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence 55789999998888777532 2223 7777654
No 59
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=9e-12 Score=107.52 Aligned_cols=83 Identities=25% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||||||+|.++..+++.+. .|+|+|+|+.|++.|++++...+ ...++.+..+|+. ..+++||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~---~~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE---SLLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch---hccCCcCEEEEc
Confidence 4578999999999999999998876 89999999999999999887651 1247889998843 346889999999
Q ss_pred cccccCCCcc
Q 023034 256 AAIHCWSSPS 265 (288)
Q Consensus 256 ~vl~h~~d~~ 265 (288)
.+++|++++.
T Consensus 135 ~~l~~~~~~~ 144 (230)
T PRK07580 135 DVLIHYPQED 144 (230)
T ss_pred chhhcCCHHH
Confidence 9999987653
No 60
>PRK06922 hypothetical protein; Provisional
Probab=99.34 E-value=5.3e-12 Score=121.65 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=72.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEe
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~ 254 (288)
++.+|||||||+|.++..+++..++.+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999999998887789999999999999999886554 356888999998887 78899999999
Q ss_pred ccccccCC
Q 023034 255 GAAIHCWS 262 (288)
Q Consensus 255 ~~vl~h~~ 262 (288)
+.++||+.
T Consensus 494 n~vLH~L~ 501 (677)
T PRK06922 494 SSILHELF 501 (677)
T ss_pred chHHHhhh
Confidence 99999763
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.34 E-value=1.2e-11 Score=102.95 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (288)
.+...+...++.+|||+|||+|.++..+++.++ +|+|+|+|+.|++.+++++... ..++.++.+|+.+.+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence 344445445577899999999999999999887 9999999999999999998776 346888999987654 45
Q ss_pred ccceEEeccccccCCC
Q 023034 248 SIDAVHAGAAIHCWSS 263 (288)
Q Consensus 248 sfD~V~~~~vl~h~~d 263 (288)
+||+|+++..+++.++
T Consensus 82 ~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 82 KFDVILFNPPYLPLED 97 (179)
T ss_pred cccEEEECCCCCCCcc
Confidence 8999999988877754
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.31 E-value=8.6e-12 Score=115.65 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=82.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|++|++.|+++... ..+.+..+|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4556667777789999999999999999998864 25999999999999999998632 2478888888765
Q ss_pred CCccceEEeccccccCCCc--cccc----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t~~~ 278 (288)
+++||+|++..+++|+.+. ..++ |.+++.++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 4789999999999999643 3333 8888877653
No 63
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.30 E-value=4.1e-11 Score=98.46 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=98.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023034 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (288)
Q Consensus 164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (288)
+.....+..|.+.++.+++|||||+|..+..++..++..+|+++|-++++++..+++.++.+ .+++.++.+++.+.-
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~L 97 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHhh
Confidence 33456677888999999999999999999999988899999999999999999999999983 789999999998642
Q ss_pred CCCCccceEEeccccccCCCccccc-------ceEEEEecCcccHHHHHhh
Q 023034 244 FASSSIDAVHAGAAIHCWSSPSTGV-------GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~~d~~~~l-------G~lvi~t~~~~~l~el~~~ 287 (288)
-...+||.|+.... ..++..-... |++++.....+++..+.++
T Consensus 98 ~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~ 147 (187)
T COG2242 98 PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEA 147 (187)
T ss_pred cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHH
Confidence 22238999999888 5555433333 8999988888887777655
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.5e-11 Score=101.83 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=75.8
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccce
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~ 251 (288)
.|....-.++||+|||.|.++..|+.+.. +++++|+|+..++.|+++++.. .++.|.++|+.+. .++++||+
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCeeE
Confidence 45655567899999999999999999976 9999999999999999998764 6899999999875 36789999
Q ss_pred EEeccccccCCCcc---ccc----------ceEEEEecCc
Q 023034 252 VHAGAAIHCWSSPS---TGV----------GVFFQVTLII 278 (288)
Q Consensus 252 V~~~~vl~h~~d~~---~~l----------G~lvi~t~~~ 278 (288)
|+...+++++.+.+ .++ |.++++++..
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 99999999997643 222 9999988754
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=2.1e-11 Score=105.59 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=86.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (288)
+.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++... ...+.+...|+..++ ..
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence 4555555556788999999999999999988765 8999999999999999987765 246778888887765 34
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~ 278 (288)
+++||+|++..+++|++++..++ |.++++++..
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 57899999999999999988776 8888887643
No 66
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.28 E-value=5e-11 Score=101.88 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=83.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
...+...+...++.+|||||||+|.++..+++... +++++|+++++++.|+++++..+ ..++.+..+|+......
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc
Confidence 45666777777889999999999999998888764 89999999999999999988762 45689999998654334
Q ss_pred CCccceEEeccccccCCCccc-cc---ceEEEEec
Q 023034 246 SSSIDAVHAGAAIHCWSSPST-GV---GVFFQVTL 276 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~-~l---G~lvi~t~ 276 (288)
.++||+|++...+++++.... .| |.+++...
T Consensus 142 ~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence 578999999988887753221 12 77777665
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=1.5e-11 Score=103.80 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=83.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD~V~ 253 (288)
...+|||||||+|.++..+++..+...++|+|+++.|++.|++++... + ..++.++++|+.+++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-~--l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-G--LKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-C--CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 356899999999999999999988889999999999999999988776 2 358999999998653 4567899999
Q ss_pred eccccccCCCc--------cccc----------ceEEEEecCcccHHHHHh
Q 023034 254 AGAAIHCWSSP--------STGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 254 ~~~vl~h~~d~--------~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
++....+.... ..++ |.|++.+.......++.+
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~ 143 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLK 143 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 87654332211 1122 999998887776665544
No 68
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=2.2e-11 Score=116.39 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=82.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC--CCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF 244 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~--~lp~ 244 (288)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++.... ..++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence 4455666655678999999999999999999875 999999999999988764221 367899999996 4678
Q ss_pred CCCccceEEeccccccCCCc--cccc----------ceEEEEe
Q 023034 245 ASSSIDAVHAGAAIHCWSSP--STGV----------GVFFQVT 275 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~--~~~l----------G~lvi~t 275 (288)
++++||+|++..+++|+++. ..++ |.+++..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 88999999999999999874 3343 8887764
No 69
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.1e-11 Score=99.10 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=89.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
...++.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..+...+.|+++++..+ ..++.++++|...---
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCC
Confidence 356788889999999999999999999999999876 99999999999999999999883 5679999999986544
Q ss_pred CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023034 245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT 275 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t 275 (288)
+.+.||.|+.......+|+.. +.| |++++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEE
Confidence 568999999999998887632 222 7766654
No 70
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=102.65 Aligned_cols=87 Identities=30% Similarity=0.394 Sum_probs=69.2
Q ss_pred HHHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC-CCC
Q 023034 167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLP 243 (288)
Q Consensus 167 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~-~lp 243 (288)
+...+.+... ....|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.++- ..-+++.+|.- -+|
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLP 107 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCC
Confidence 3344444433 367899999999999999999987 8999999999999999741 12356777764 689
Q ss_pred CCCCccceEEeccccccCCC
Q 023034 244 FASSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~~d 263 (288)
|..++||.|++..+++++-+
T Consensus 108 frpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCCCccceEEEeeeeeeecc
Confidence 99999999999988887644
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=7.8e-11 Score=98.28 Aligned_cols=97 Identities=19% Similarity=0.293 Sum_probs=73.2
Q ss_pred CCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023034 159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (288)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d 238 (288)
.+.|..+...+.+.+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++... +....++.++.+|
T Consensus 5 ~~~p~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d 81 (188)
T PRK14968 5 VYEPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSD 81 (188)
T ss_pred ccCcchhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecc
Confidence 34444444556666655668899999999999999999885 49999999999999999998766 2111228888998
Q ss_pred CCCCCCCCCccceEEeccccc
Q 023034 239 ISRLPFASSSIDAVHAGAAIH 259 (288)
Q Consensus 239 ~~~lp~~~~sfD~V~~~~vl~ 259 (288)
+.+ ++.+++||+|+++..+.
T Consensus 82 ~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 82 LFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred ccc-cccccCceEEEECCCcC
Confidence 865 34455899999876543
No 72
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=2.7e-11 Score=106.94 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHhc---CCC----------------
Q 023034 176 VLGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQE---SNF---------------- 227 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~l~~A~~~~~~~---~g~---------------- 227 (288)
.++.+|||+|||+|. ++..+++.++ ..+|+|+|+|+.|++.|++.+-.. .+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4555555432 468999999999999999853100 000
Q ss_pred -----CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCcc--ccc----------ceEEEEe
Q 023034 228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVT 275 (288)
Q Consensus 228 -----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t 275 (288)
...++.|.++|+.+.+++.++||+|+|.++++|++++. +++ |.++++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 01368999999999887789999999999999997654 344 7777654
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.25 E-value=1.1e-10 Score=98.70 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=84.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF 244 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~ 244 (288)
......+...++.+|||+|||+|.++..+++. ++..+|+++|+++.|++.+++++... + ...++.++.+|+.+. +.
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g-~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-G-VLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-C-CCCCeEEEEechhhhHhh
Confidence 34456677778999999999999999988775 44569999999999999999998876 2 135788999998763 33
Q ss_pred CCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023034 245 ASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
..+.||.|++.... .++...+ |++++.....+++.++.+
T Consensus 108 ~~~~~D~V~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 156 (198)
T PRK00377 108 INEKFDRIFIGGGS---EKLKEIISASWEIIKKGGRIVIDAILLETVNNALS 156 (198)
T ss_pred cCCCCCEEEECCCc---ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHH
Confidence 34689999985432 2222223 888887776666666544
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=5.7e-11 Score=102.11 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=81.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEec
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~ 255 (288)
.+.+|||+|||+|.++..+++.+. .++|+|+++.+++.+++++...+ ..++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 477999999999999999988776 79999999999999999887651 22688899998877654 3789999999
Q ss_pred cccccCCCccccc----------ceEEEEecCc
Q 023034 256 AAIHCWSSPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 256 ~vl~h~~d~~~~l----------G~lvi~t~~~ 278 (288)
++++|+.++..++ |.+++++...
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9999999998776 8888877643
No 75
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.25 E-value=3.9e-11 Score=102.04 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
...+.+.+...++.+|||||||+|+++..++.. ++...|+++|..+..++.|+++++..+ ..++.++.+|.....-
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccc
Confidence 467788888889999999999999999999987 454589999999999999999999872 5689999999876444
Q ss_pred CCCccceEEeccccccCCCcc-ccc---ceEEEEe
Q 023034 245 ASSSIDAVHAGAAIHCWSSPS-TGV---GVFFQVT 275 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~~-~~l---G~lvi~t 275 (288)
..+.||.|++......+|..- +.| |++++-.
T Consensus 138 ~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEE
T ss_pred cCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEE
Confidence 567899999999988775331 122 6666543
No 76
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=7.3e-11 Score=101.25 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCEEEEEecCCCCC
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLP 243 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------g~~~~~i~~~~~d~~~lp 243 (288)
+...++.+|||+|||.|..+.+|+++|. +|+|+|+|+.+++.+.+...... .....++++.++|+.+++
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3344578999999999999999999998 99999999999998753211100 001357899999999886
Q ss_pred CCC-CccceEEeccccccCCCc
Q 023034 244 FAS-SSIDAVHAGAAIHCWSSP 264 (288)
Q Consensus 244 ~~~-~sfD~V~~~~vl~h~~d~ 264 (288)
..+ +.||.|+...+++|++..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~ 132 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEE 132 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHH
Confidence 433 689999999999999643
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.23 E-value=9.8e-11 Score=103.90 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=75.5
Q ss_pred CCCeEEEEcCccchHHHH--HHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~--l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
++.+|+|||||.|.++.. ++...++++++|+|+++.+++.|++.+... .....++.|..+|+.+.+-..+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEE
Confidence 678999999998855433 334567789999999999999999998542 12346799999999886534578999999
Q ss_pred ccccccC--CCccccc----------ceEEEEe
Q 023034 255 GAAIHCW--SSPSTGV----------GVFFQVT 275 (288)
Q Consensus 255 ~~vl~h~--~d~~~~l----------G~lvi~t 275 (288)
. +++++ +++.+++ |.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 98888 5666666 6666665
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=7.4e-11 Score=105.56 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=79.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
++.+|||+|||+|.++..+++.+. .+|+|+|+++.|++.|++++... + ....+.+..++.. +..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~-~~~~~~~~~~~~~--~~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-Q-VSDRLQVKLIYLE--QPIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-C-CCcceEEEecccc--cccCCCceEEEEec
Confidence 478999999999999998888764 58999999999999999998876 1 2334566666533 33467899999987
Q ss_pred ccccCCC----ccccc---ceEEEEecCcccHHHHHhh
Q 023034 257 AIHCWSS----PSTGV---GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 257 vl~h~~d----~~~~l---G~lvi~t~~~~~l~el~~~ 287 (288)
..+++.. ..+.+ |.++++.+......++.+.
T Consensus 234 ~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~ 271 (288)
T TIGR00406 234 LAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDA 271 (288)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHH
Confidence 6554322 22223 9999999988888877664
No 79
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=93.85 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=83.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v 257 (288)
..+|||+|||+|.++..|++.+.....+|+|+|+.+++.|+..++..+ ....|.|.+.|+....+..+.||+|+--.+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCc
Confidence 449999999999999999999887789999999999999998887762 234499999999988888899999998776
Q ss_pred cccCC----Ccccc-----------c--ceEEEEecCcccHHHHHhh
Q 023034 258 IHCWS----SPSTG-----------V--GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 258 l~h~~----d~~~~-----------l--G~lvi~t~~~~~l~el~~~ 287 (288)
+.-+. .+..- | |.+++.|....+..||-+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 65432 11111 1 5555556566677776554
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.20 E-value=2.2e-10 Score=94.64 Aligned_cols=92 Identities=25% Similarity=0.375 Sum_probs=72.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+.+.+...++.+|||+|||+|.++..+++.++..+|+++|+++.+++.++++++..+ ..++.++..|+.+.. ++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~~~~~-~~ 96 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDLFEAL-PD 96 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESSTTTTC-CT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---ccccccccccccccc-cc
Confidence 44555555446789999999999999999999987789999999999999999998872 233999999987532 37
Q ss_pred CccceEEeccccccCC
Q 023034 247 SSIDAVHAGAAIHCWS 262 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~ 262 (288)
++||+|+++--++.-.
T Consensus 97 ~~fD~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGG 112 (170)
T ss_dssp TCEEEEEE---SBTTS
T ss_pred cceeEEEEccchhccc
Confidence 8999999987655443
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.20 E-value=2.9e-10 Score=104.75 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=74.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+++....+.+|||+|||+|.++..+++++|..+|+++|+|+.|++.|+++++..+.....++.++..|+... ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 46677777765567999999999999999999988889999999999999999998765110123678888887542 24
Q ss_pred CCccceEEecccccc
Q 023034 246 SSSIDAVHAGAAIHC 260 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h 260 (288)
.++||+|+++-.+|.
T Consensus 296 ~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 296 PFRFNAVLCNPPFHQ 310 (378)
T ss_pred CCCEEEEEECcCccc
Confidence 568999999866654
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.20 E-value=1.6e-10 Score=106.11 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF 244 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~ 244 (288)
+.+...+....+..+||||||+|.++..+++..|...++|+|+++.|++.|.+++...+ ..++.++++|+..+ .+
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~ 188 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELL 188 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhC
Confidence 44555555556779999999999999999999888899999999999999999987762 46899999999764 57
Q ss_pred CCCccceEEeccccccCCCc------cccc----------ceEEEEecCcccHHH
Q 023034 245 ASSSIDAVHAGAAIHCWSSP------STGV----------GVFFQVTLIIHVVED 283 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h~~d~------~~~l----------G~lvi~t~~~~~l~e 283 (288)
+++++|.|++.+...|.... ..++ |.+.+.|-.......
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~ 243 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF 243 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence 78999999985433222111 1222 999998866554433
No 83
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=1.4e-10 Score=95.66 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+.+.+...++.+|||||||+|.++..+++++. +++++|+++.|++.+++++.. ..++.++.+|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence 3456666666788999999999999999999854 999999999999999988644 257999999999998877
Q ss_pred CccceEEecccc
Q 023034 247 SSIDAVHAGAAI 258 (288)
Q Consensus 247 ~sfD~V~~~~vl 258 (288)
..||.|+++--+
T Consensus 76 ~~~d~vi~n~Py 87 (169)
T smart00650 76 LQPYKVVGNLPY 87 (169)
T ss_pred cCCCEEEECCCc
Confidence 789999987544
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=1.8e-10 Score=97.30 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=82.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~ 245 (288)
..+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.|++.++++++.. + ..++.++.+|+.+ ++..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-~--~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-G--VKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCCeEEEECchHHHHhhC
Confidence 4566777777789999999999999999987766679999999999999999998776 2 3578999999864 2222
Q ss_pred CCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHHh
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
...+|.++.... .+...++ |.+++.+...+++.++.+
T Consensus 107 ~~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 153 (196)
T PRK07402 107 APAPDRVCIEGG----RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISE 153 (196)
T ss_pred CCCCCEEEEECC----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHH
Confidence 234677665321 1112222 899999887766665543
No 85
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=2.3e-10 Score=97.68 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CCC
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 246 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~ 246 (288)
.++.+|||||||+|.++..+++.. +...|+|+|+++ |. ...++.++++|+.+.+ +.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 558899999999999999998874 446999999998 21 1346889999999853 667
Q ss_pred CccceEEeccccccCCCcc-----------ccc----------ceEEEEecCcccHHHHH
Q 023034 247 SSIDAVHAGAAIHCWSSPS-----------TGV----------GVFFQVTLIIHVVEDLA 285 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~-----------~~l----------G~lvi~t~~~~~l~el~ 285 (288)
++||+|++..+.++..++. .++ |.|++.++..+.+.++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence 8999999987776654431 222 99999999888765554
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.17 E-value=3.1e-10 Score=102.41 Aligned_cols=105 Identities=15% Similarity=0.067 Sum_probs=85.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+.+.+...++.+|||||||+|.++..++++.|..+++++|. +.+++.+++++... | ...++.++.+|+.+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-g-l~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-G-VADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-C-ccceEEEEecCccCCCCC-
Confidence 4455555666678999999999999999999998889999998 78999999988776 2 246799999999876654
Q ss_pred CccceEEeccccccCCCcc--ccc----------ceEEEEec
Q 023034 247 SSIDAVHAGAAIHCWSSPS--TGV----------GVFFQVTL 276 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~--~~l----------G~lvi~t~ 276 (288)
.+|+|++..++|++.+.. ..+ |++++..+
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 369999999999987643 233 99998875
No 87
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=8.1e-11 Score=104.92 Aligned_cols=114 Identities=20% Similarity=0.319 Sum_probs=82.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.++.. ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..+ |. ..++.+. ...+. .
T Consensus 152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~-~~~~~v~--~~~~~--~ 222 (295)
T PF06325_consen 152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GV-EDRIEVS--LSEDL--V 222 (295)
T ss_dssp HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T--TTCEEES--CTSCT--C
T ss_pred HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CC-CeeEEEE--Eeccc--c
Confidence 455555544 478999999999999999999987 58999999999999999999887 22 3344432 22222 3
Q ss_pred CCccceEEecccccc----CCCccccc---ceEEEEecCcccHHHHHhhC
Q 023034 246 SSSIDAVHAGAAIHC----WSSPSTGV---GVFFQVTLIIHVVEDLAVSF 288 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h----~~d~~~~l---G~lvi~t~~~~~l~el~~~~ 288 (288)
.+.||+|+++-...- .++....+ |.++++.+......++.++|
T Consensus 223 ~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 223 EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence 489999999764432 23444444 99999999998888887653
No 88
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.17 E-value=3e-10 Score=102.66 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
..+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.|++.|+++++.. | ..++.++.+|+...+..
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-g--~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-G--IENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCChhhcccc
Confidence 4555666666789999999999999999988753 247999999999999999998876 2 45789999998876655
Q ss_pred CCccceEEeccccccCCCc-cccc---ceEEEE
Q 023034 246 SSSIDAVHAGAAIHCWSSP-STGV---GVFFQV 274 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~-~~~l---G~lvi~ 274 (288)
.++||+|++...+.++++. .+.+ |++++.
T Consensus 147 ~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 6789999998888777543 2222 777664
No 89
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.16 E-value=5.2e-10 Score=102.17 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=80.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.|++.|+++++.. .....++.+|.... .+
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--IK 259 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--cC
Confidence 4556666554566899999999999999999987779999999999999999998876 23456777777542 25
Q ss_pred CccceEEeccccccCCCc-----cccc----------ceEEEEecC
Q 023034 247 SSIDAVHAGAAIHCWSSP-----STGV----------GVFFQVTLI 277 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~-----~~~l----------G~lvi~t~~ 277 (288)
+.||+|+++-.+|+..+. ..++ |.+++....
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 789999999888864322 2222 888777644
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.15 E-value=5.4e-10 Score=100.63 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=79.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCC----ccc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID 250 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~----sfD 250 (288)
++.+|||+|||+|..+..+.+... ..+|+|+|+|+.|++.|++++... .+..++.++++|+.+ +++... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence 467899999999999999998853 358999999999999999998764 123567788999876 344332 234
Q ss_pred eEEeccccccCCCcc--ccc----------ceEEEEecCcccHHHHHhh
Q 023034 251 AVHAGAAIHCWSSPS--TGV----------GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 251 ~V~~~~vl~h~~d~~--~~l----------G~lvi~t~~~~~l~el~~~ 287 (288)
++++...++|++..+ .++ |.|++..-.......+..+
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence 555567788886432 223 8888887766666655544
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=2.9e-10 Score=99.75 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++... +. ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~-~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GV-ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CC-CceEEEccC--------CCCcCEEEEc
Confidence 3588999999999999998888776 36999999999999999998776 21 122333222 2279999987
Q ss_pred cccccCC----Cccccc---ceEEEEecCcccHHHHHhh
Q 023034 256 AAIHCWS----SPSTGV---GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 256 ~vl~h~~----d~~~~l---G~lvi~t~~~~~l~el~~~ 287 (288)
...+.+. ...+.| |.++++.+......++.+.
T Consensus 187 i~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~ 225 (250)
T PRK00517 187 ILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEA 225 (250)
T ss_pred CcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHH
Confidence 6544332 222333 9999998887777766553
No 92
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.12 E-value=1.6e-11 Score=103.07 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023034 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (288)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~ 237 (288)
+|..|....++| ..+...+-.++||+|||||..+..+..... +++|+|+|++|++.|.++ ...-.+.++
T Consensus 107 ~Y~vP~~l~emI-~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~~A 175 (287)
T COG4976 107 GYSVPELLAEMI-GKADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLYVA 175 (287)
T ss_pred cCccHHHHHHHH-HhccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHHHH
Confidence 455555544444 344444567899999999999999998876 999999999999999987 233345666
Q ss_pred cCCC-CC-CCCCccceEEeccccccCCCccccc----------ceEEEEec
Q 023034 238 DISR-LP-FASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTL 276 (288)
Q Consensus 238 d~~~-lp-~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~ 276 (288)
++.. ++ ..+..||+|++..|+.++.+.+.++ |.|.++.=
T Consensus 176 ea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 176 EAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 6653 22 4567899999999999999988887 78887763
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.12 E-value=2.4e-10 Score=87.96 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=67.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~ 255 (288)
|.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.|+.++...+ ...++.++++|+.+.. +.+++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 4699999999999999999988762 2467999999998765 778999999998
Q ss_pred ccccc
Q 023034 256 AAIHC 260 (288)
Q Consensus 256 ~vl~h 260 (288)
--+..
T Consensus 78 pP~~~ 82 (117)
T PF13659_consen 78 PPYGP 82 (117)
T ss_dssp -STTS
T ss_pred CCCcc
Confidence 76653
No 94
>PRK14967 putative methyltransferase; Provisional
Probab=99.12 E-value=5.8e-10 Score=96.11 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~ 253 (288)
...++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++... ..++.++.+|+... +++++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence 345678999999999999999988753 59999999999999999998776 24688889998763 4567899999
Q ss_pred ecc
Q 023034 254 AGA 256 (288)
Q Consensus 254 ~~~ 256 (288)
++-
T Consensus 107 ~np 109 (223)
T PRK14967 107 SNP 109 (223)
T ss_pred ECC
Confidence 974
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=2e-09 Score=98.12 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=85.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+.......++.+|||+|||+|.++..++..+. .++|+|+++.|++.|+++++.. | ..++.+..+|+.++|+.+
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~-g--~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY-G--IEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh-C--CCCCeEEecchhcCCccc
Confidence 4444555566788999999999999988877765 9999999999999999999877 2 334889999999999888
Q ss_pred CccceEEecccccc---C--C---C-ccccc----------ceEEEEecCcccHHHHH
Q 023034 247 SSIDAVHAGAAIHC---W--S---S-PSTGV----------GVFFQVTLIIHVVEDLA 285 (288)
Q Consensus 247 ~sfD~V~~~~vl~h---~--~---d-~~~~l----------G~lvi~t~~~~~l~el~ 285 (288)
++||+|+++--... . . + ...++ |.+++..+....+.++.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~ 304 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA 304 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence 89999999632110 0 0 0 11222 88888887766665553
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.5e-10 Score=99.45 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+++. ++.+|||+|||+|.++...++.|. ..++|+|+++..++.|++++..++ .. ..+.....+....+ .
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~-v~-~~~~~~~~~~~~~~-~ 226 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG-VE-LLVQAKGFLLLEVP-E 226 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcC-Cc-hhhhcccccchhhc-c
Confidence 555655555 489999999999999999999987 579999999999999999998872 11 11222222222222 2
Q ss_pred CCccceEEeccccc----cCCCccccc---ceEEEEecCcccHHHHHhhC
Q 023034 246 SSSIDAVHAGAAIH----CWSSPSTGV---GVFFQVTLIIHVVEDLAVSF 288 (288)
Q Consensus 246 ~~sfD~V~~~~vl~----h~~d~~~~l---G~lvi~t~~~~~l~el~~~~ 288 (288)
.+.||+|+++-.-+ -.++....+ |.++++....+....+.++|
T Consensus 227 ~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~ 276 (300)
T COG2264 227 NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAY 276 (300)
T ss_pred cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHH
Confidence 36999999976322 123344444 99999999888877776653
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=9.4e-10 Score=96.39 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023034 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (288)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~ 236 (288)
+.|++|......+. +....+.+|||+|||+|.++..++++.+..+|+|+|+++.|++.++++ ..++.+++
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEE
Confidence 34667776654432 223346799999999999998888765446999999999999999986 34688999
Q ss_pred ecCCCCCCCCCccceEEeccccccCC
Q 023034 237 ADISRLPFASSSIDAVHAGAAIHCWS 262 (288)
Q Consensus 237 ~d~~~lp~~~~sfD~V~~~~vl~h~~ 262 (288)
+|+.++.. +.+||+|+++-.+.|.+
T Consensus 116 ~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 116 SDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred Cchhhhcc-cCCCcEEEEcCCccccC
Confidence 99987753 46899999988888754
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=100.35 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=64.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEec
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG 255 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~ 255 (288)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++++.. ..++.++++|+.+..+ ..++||+|+++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCCCccEEEEC
Confidence 456999999999999999988776679999999999999999998876 3479999999865433 24689999996
Q ss_pred c
Q 023034 256 A 256 (288)
Q Consensus 256 ~ 256 (288)
-
T Consensus 327 P 327 (423)
T PRK14966 327 P 327 (423)
T ss_pred C
Confidence 4
No 99
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=2.8e-09 Score=91.49 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=78.3
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc------C---CCCCCCEEEEEecCCCCC
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S---NFPKENFLLVRADISRLP 243 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~------~---g~~~~~i~~~~~d~~~lp 243 (288)
+...++.+||+.|||.|..+.+|+++|. +|+|+|+|+..++.+.+..... + -....+++++++|+.+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3444578999999999999999999998 8999999999999986632100 0 001357899999999986
Q ss_pred CC---CCccceEEeccccccCCCccccc------------ceEEEEecC
Q 023034 244 FA---SSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLI 277 (288)
Q Consensus 244 ~~---~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~ 277 (288)
.. .+.||+|+-...|++++...+.- |.+++.++.
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 42 26899999999999997543321 777777663
No 100
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.03 E-value=1.5e-09 Score=96.44 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++. ..++.++++|+..+++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCCH
Confidence 346667777777788999999999999999999986 99999999999999998642 2579999999999876
Q ss_pred CCCccceEEecc
Q 023034 245 ASSSIDAVHAGA 256 (288)
Q Consensus 245 ~~~sfD~V~~~~ 256 (288)
++-.+|.|+++-
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 543357777764
No 101
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.03 E-value=2.3e-09 Score=94.50 Aligned_cols=84 Identities=13% Similarity=0.206 Sum_probs=70.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. ..++.++.+|+.+++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch
Confidence 45666777766789999999999999999999865 999999999999999988643 25799999999988765
Q ss_pred CCccceEEecccc
Q 023034 246 SSSIDAVHAGAAI 258 (288)
Q Consensus 246 ~~sfD~V~~~~vl 258 (288)
.||.|+++.-.
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999887543
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=1e-09 Score=94.78 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F 244 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~ 244 (288)
-++..+.......+|||+|||+|..+..++++...++++|||+.+.|++.|+++++.. ....++.++++|+.++. .
T Consensus 34 iLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhcc
Confidence 3455666655688999999999999999999966689999999999999999999884 45789999999998764 3
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
...+||+|+|+=-..
T Consensus 112 ~~~~fD~Ii~NPPyf 126 (248)
T COG4123 112 VFASFDLIICNPPYF 126 (248)
T ss_pred cccccCEEEeCCCCC
Confidence 345799999975443
No 103
>PRK04266 fibrillarin; Provisional
Probab=99.02 E-value=1.8e-09 Score=93.07 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=62.7
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCC
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS 247 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~ 247 (288)
.+...++.+|||+|||+|.++..+++..+.++|+|+|+++.|++.+.++++.. .++.++.+|+... ++ ..
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence 46777899999999999999999998754468999999999999888776543 5788899998752 22 25
Q ss_pred ccceEEec
Q 023034 248 SIDAVHAG 255 (288)
Q Consensus 248 sfD~V~~~ 255 (288)
+||+|++.
T Consensus 141 ~~D~i~~d 148 (226)
T PRK04266 141 KVDVIYQD 148 (226)
T ss_pred cCCEEEEC
Confidence 69999854
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.02 E-value=2.5e-09 Score=95.47 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... + ...++.++.+|+.+ ++++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~-~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-G-LEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C-CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 3457899999999999999999877779999999999999999998876 2 22578999999854 2345689999996
No 105
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.00 E-value=4.1e-09 Score=91.99 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=68.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+...+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++++... + ..++.++.+|+.+ ++++
T Consensus 78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 78 EAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-G--LDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhc-cCcC
Confidence 344444442 356899999999999999999877679999999999999999998776 2 3469999999876 4567
Q ss_pred CccceEEecc
Q 023034 247 SSIDAVHAGA 256 (288)
Q Consensus 247 ~sfD~V~~~~ 256 (288)
++||+|+++-
T Consensus 153 ~~fD~Vi~np 162 (251)
T TIGR03534 153 GKFDLIVSNP 162 (251)
T ss_pred CceeEEEECC
Confidence 8999999853
No 106
>PHA03412 putative methyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=91.22 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=70.9
Q ss_pred CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE
Q 023034 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233 (288)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~ 233 (288)
+.|++|......+.... ..+.+|||+|||+|.++..++++. ...+|+++|+++.+++.|+++ ..++.
T Consensus 31 GqFfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~ 100 (241)
T PHA03412 31 GAFFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEAT 100 (241)
T ss_pred CccCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCE
Confidence 45777877655554222 236799999999999999988752 235899999999999999986 34578
Q ss_pred EEEecCCCCCCCCCccceEEeccccc
Q 023034 234 LVRADISRLPFASSSIDAVHAGAAIH 259 (288)
Q Consensus 234 ~~~~d~~~lp~~~~sfD~V~~~~vl~ 259 (288)
++.+|+...++ +++||+|+++=-+.
T Consensus 101 ~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 101 WINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred EEEcchhcccc-cCCccEEEECCCCC
Confidence 99999987665 56899999975444
No 107
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=5.2e-09 Score=85.97 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~ 253 (288)
..-.+..|+|+|||||.++...+-.|+ .+|+|+|+++++++.++++..+. ..++.++++|+.+.. +.+|.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 344578899999999999999999887 69999999999999999998875 578999999999874 5688888
Q ss_pred ecc
Q 023034 254 AGA 256 (288)
Q Consensus 254 ~~~ 256 (288)
++=
T Consensus 114 mNP 116 (198)
T COG2263 114 MNP 116 (198)
T ss_pred ECC
Confidence 864
No 108
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.98 E-value=2.7e-09 Score=101.11 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=70.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---- 241 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~---- 241 (288)
.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++++.. + ..++.++++|+.+
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN-G--LDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEeChHHhhhh
Confidence 45566666666788999999999999999998875 9999999999999999998876 2 3579999999864
Q ss_pred CCCCCCccceEEec
Q 023034 242 LPFASSSIDAVHAG 255 (288)
Q Consensus 242 lp~~~~sfD~V~~~ 255 (288)
+++.+++||+|++.
T Consensus 361 ~~~~~~~fD~Vi~d 374 (443)
T PRK13168 361 QPWALGGFDKVLLD 374 (443)
T ss_pred hhhhcCCCCEEEEC
Confidence 23556789999984
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.97 E-value=5.7e-09 Score=93.25 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=62.9
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++...+ ...++.++++|+.+ +++..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 68999999999999999998877799999999999999999988762 12359999999875 3444589999996
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1e-08 Score=90.48 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=84.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
-+.+++.+....+.+|||+|||.|.++..+++..|..+++-+|+|..+++.|++++..++ ..+..++..|..+ +..
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v~ 222 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PVE 222 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-ccc
Confidence 578888888777779999999999999999999999999999999999999999998872 2333556666543 333
Q ss_pred CCccceEEeccccccCCCccc----cc-----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSPST----GV-----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~----~l-----------G~lvi~t~~~ 278 (288)
+ +||+|+++=-||--.+... .+ |.|.+..-..
T Consensus 223 ~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 223 G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred c-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 3 9999999988875444433 11 8887776643
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=8.3e-09 Score=88.65 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=92.9
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023034 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (288)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~ 240 (288)
..++...+...++..+|.+|||.|.|+|.++.+|+.. ++.++|+..|+.+.+++.|++++... + ...++.+..+|+.
T Consensus 79 yPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~-l~d~v~~~~~Dv~ 156 (256)
T COG2519 79 YPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-G-LGDRVTLKLGDVR 156 (256)
T ss_pred cCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-c-cccceEEEecccc
Confidence 3445678888899999999999999999999999974 67789999999999999999999987 2 2344899999998
Q ss_pred CCCCCCCccceEEeccccccCCCccccc----------ceEEEEecCcccHHHHH
Q 023034 241 RLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQVTLIIHVVEDLA 285 (288)
Q Consensus 241 ~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~~l~el~ 285 (288)
+.-+++ .||+|+. .+|+|..++ |.+++-.+.-..+..+.
T Consensus 157 ~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 157 EGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred cccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 876655 8999997 355665555 77777777655555443
No 112
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=1.4e-08 Score=89.93 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=67.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
+.+...+...++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++... ...++.++.+|+... +.+
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~-~~~ 173 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP-LPG 173 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-CCC
Confidence 3333344445678999999999999999999887779999999999999999998722 146799999998543 335
Q ss_pred CccceEEec
Q 023034 247 SSIDAVHAG 255 (288)
Q Consensus 247 ~sfD~V~~~ 255 (288)
++||+|+++
T Consensus 174 ~~fD~Iv~n 182 (275)
T PRK09328 174 GRFDLIVSN 182 (275)
T ss_pred CceeEEEEC
Confidence 789999985
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=5.5e-09 Score=94.20 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=63.2
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
..+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++.. + ...++.++++|+.+. +++++||+|+++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~-l~~~i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-G-LEDRVTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C-CCCcEEEEECchhhh-CCCCCccEEEEC
Confidence 36899999999999999999877789999999999999999998876 1 124699999998642 235689999986
No 114
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.93 E-value=3.4e-09 Score=96.03 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=68.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF- 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~- 244 (288)
++.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.|++.|+++++.. + ..++.++++|+.++..
T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~-~--l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL-G--LTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEcCHHHHHHh
Confidence 34444555444578999999999999999999775 9999999999999999998876 2 3579999999987542
Q ss_pred CCCccceEEec
Q 023034 245 ASSSIDAVHAG 255 (288)
Q Consensus 245 ~~~sfD~V~~~ 255 (288)
..+.||+|+..
T Consensus 237 ~~~~~D~Vv~d 247 (315)
T PRK03522 237 QGEVPDLVLVN 247 (315)
T ss_pred cCCCCeEEEEC
Confidence 24579999986
No 115
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=9.6e-09 Score=91.96 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
..+.+.+.+...++.+|||||||+|.++..+.+.+. +|+++|+++.|++.+++++... + ...++.++.+|+...++
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~-~-~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS-P-LASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc-C-CCCcEEEEECCHhhhcc
Confidence 346667777777789999999999999999998875 8999999999999999988764 1 13689999999987765
Q ss_pred CCCccceEEecc
Q 023034 245 ASSSIDAVHAGA 256 (288)
Q Consensus 245 ~~~sfD~V~~~~ 256 (288)
..||.|+++-
T Consensus 100 --~~~d~VvaNl 109 (294)
T PTZ00338 100 --PYFDVCVANV 109 (294)
T ss_pred --cccCEEEecC
Confidence 3689988754
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.91 E-value=9.8e-09 Score=96.84 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=73.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC--
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-- 244 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-- 244 (288)
..+...+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.+++.++++++.. |.. ..+.+..+|....++
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~~-~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GLT-IKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CCC-eEEEEeccccccccccc
Confidence 4455667777899999999999999999988754579999999999999999999887 322 234456777765543
Q ss_pred CCCccceEEe------ccccccCCC
Q 023034 245 ASSSIDAVHA------GAAIHCWSS 263 (288)
Q Consensus 245 ~~~sfD~V~~------~~vl~h~~d 263 (288)
.+++||.|++ .+++.+.|+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPD 330 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcc
Confidence 5678999996 346666655
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1.8e-08 Score=95.04 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA 245 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~ 245 (288)
.+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++.. ..++.++++|+..++ +.
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQWWD 310 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhhcc
Confidence 344566777899999999999999999998875569999999999999999999886 234789999998764 34
Q ss_pred CCccceEEe
Q 023034 246 SSSIDAVHA 254 (288)
Q Consensus 246 ~~sfD~V~~ 254 (288)
.++||.|++
T Consensus 311 ~~~fD~Vl~ 319 (427)
T PRK10901 311 GQPFDRILL 319 (427)
T ss_pred cCCCCEEEE
Confidence 578999995
No 118
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=1.2e-08 Score=89.57 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=68.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+...++.+|||||||+|.++..+++.+. .++++|+++.|++.+++++.. ..++.++.+|+..++++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh
Confidence 45666777767788999999999999999999987 799999999999999987643 36789999999998865
Q ss_pred CCccc---eEEeccc
Q 023034 246 SSSID---AVHAGAA 257 (288)
Q Consensus 246 ~~sfD---~V~~~~v 257 (288)
.+| +|+++-.
T Consensus 91 --~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 --DFPKQLKVVSNLP 103 (253)
T ss_pred --HcCCcceEEEcCC
Confidence 466 6666543
No 119
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.90 E-value=4.9e-08 Score=84.96 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=88.1
Q ss_pred HhhhhhcCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 023034 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (288)
Q Consensus 150 wr~~~~~~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~ 228 (288)
|...+-.....-..+++..+..++...+|.+|||.|.|+|.++..|++. ++.++|+..|..+..++.|+++++..+ .
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l 90 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--L 90 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--C
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--C
Confidence 4444433333445566788899999999999999999999999999976 778899999999999999999999872 3
Q ss_pred CCCEEEEEecCCCCCCC---CCccceEEeccccccCCCccccc-----------ceEEEEecCcccHHHH
Q 023034 229 KENFLLVRADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGV-----------GVFFQVTLIIHVVEDL 284 (288)
Q Consensus 229 ~~~i~~~~~d~~~lp~~---~~sfD~V~~~~vl~h~~d~~~~l-----------G~lvi~t~~~~~l~el 284 (288)
..++.+...|+..-.|. +..+|+|+. -+|+|..++ |.+++-.+.-.....+
T Consensus 91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 91 DDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp CTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred CCCceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 56899999999754442 367999887 355555555 6666666655444443
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=8.5e-09 Score=75.92 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=67.1
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEecccc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 258 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~~vl 258 (288)
+|||+|||.|.++..+.+ ....+++++|+++.+++.+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999988 33469999999999999998543322 25678899999987654 56789999999999
Q ss_pred cc-CCCccccc
Q 023034 259 HC-WSSPSTGV 268 (288)
Q Consensus 259 ~h-~~d~~~~l 268 (288)
++ ..+....+
T Consensus 77 ~~~~~~~~~~l 87 (107)
T cd02440 77 HHLVEDLARFL 87 (107)
T ss_pred eehhhHHHHHH
Confidence 98 55544444
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=1.5e-08 Score=95.77 Aligned_cols=94 Identities=22% Similarity=0.188 Sum_probs=75.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (288)
..+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.++++++.. | ..++.++.+|+..++
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-g--~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-G--LKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-C--CCeEEEEeCChhhcccc
Confidence 344556777789999999999999999988873 3469999999999999999999887 2 356899999998775
Q ss_pred --CCCCccceEEec------cccccCCC
Q 023034 244 --FASSSIDAVHAG------AAIHCWSS 263 (288)
Q Consensus 244 --~~~~sfD~V~~~------~vl~h~~d 263 (288)
+..++||.|++. .++.+-++
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~ 346 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPD 346 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcc
Confidence 446789999973 45555554
No 122
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.88 E-value=1.9e-08 Score=86.26 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=73.7
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC---------CCCCCE
Q 023034 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------FPKENF 232 (288)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g---------~~~~~i 232 (288)
+...+..+...+...++.+||..|||.|.-+.+|+++|. +|+|+|+|+..++.+.+....... ....++
T Consensus 22 ~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 22 PNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp STHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 333344444445666788999999999999999999998 999999999999998544321000 013468
Q ss_pred EEEEecCCCCCCCC-CccceEEeccccccCCCc
Q 023034 233 LLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP 264 (288)
Q Consensus 233 ~~~~~d~~~lp~~~-~sfD~V~~~~vl~h~~d~ 264 (288)
+++++|+..++... ++||+|+-...|+-++..
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~ 132 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPE 132 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GG
T ss_pred EEEEcccccCChhhcCCceEEEEecccccCCHH
Confidence 99999999987544 589999999999888643
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.87 E-value=1.9e-08 Score=84.35 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=70.1
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-------
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------- 243 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp------- 243 (288)
+....++.+|||+|||+|.++..+++.. ...+|+|+|+|+.+ . ..++.++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--------CCCceEEEeeCCChhHHHHHHH
Confidence 3344568999999999999999888875 44589999999964 1 246788889987643
Q ss_pred -CCCCccceEEeccccc--------cCC---Cccccc----------ceEEEEecCcccHHHHHh
Q 023034 244 -FASSSIDAVHAGAAIH--------CWS---SPSTGV----------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 244 -~~~~sfD~V~~~~vl~--------h~~---d~~~~l----------G~lvi~t~~~~~l~el~~ 286 (288)
+++++||+|++....+ |.. +...++ |++++..+....+.++..
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence 4567899999865321 111 012222 999988777666555443
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=9.2e-09 Score=91.52 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=60.3
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
+|||+|||+|..+..++...+.++|+|+|+|+.+++.|++++... |. .++.++++|+.+-- .++||+|+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l--~~~~~~~~dlf~~~--~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GL--VRVLVVQSDLFEPL--RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CC--ccEEEEeeeccccc--CCceeEEEeC
Confidence 799999999999999999998889999999999999999999987 22 56677777655321 2489999996
No 125
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=5.9e-09 Score=85.21 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=62.5
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccCCCccccc----------ceEEEE
Q 023034 205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV----------GVFFQV 274 (288)
Q Consensus 205 ~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l----------G~lvi~ 274 (288)
+|+|+|++|++.|+++..........+++++++|++++|+++++||+|++.++++|++|+..++ |.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 4899999999999887653210112479999999999999999999999999999999998888 899988
Q ss_pred ecCcc
Q 023034 275 TLIIH 279 (288)
Q Consensus 275 t~~~~ 279 (288)
.+...
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 87654
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=2e-08 Score=96.50 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
+.+|||+|||+|.++..++...+..+|+++|+|+.+++.|++++... + ...++.++.+|+.+ +++.++||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~-l~~~v~~~~~D~~~-~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-E-VTDRIQIIHSNWFE-NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-C-Cccceeeeecchhh-hCcCCCccEEEEC
Confidence 46899999999999999988776679999999999999999998765 1 23478899999754 2345689999995
No 127
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=4.4e-09 Score=88.60 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=90.5
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v 257 (288)
-..++|||||-|...+.+...+- .+++-+|.|-.|++.++.. ..+...+...++|-+.++|.++++|+|++...
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~-----qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA-----QDPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc-----CCCceEEEEEecchhcccccccchhhhhhhhh
Confidence 45799999999999999998874 5899999999999999864 11345567788999999999999999999999
Q ss_pred cccCCCccccc----------ceEEEEecCcccHHHHHhh
Q 023034 258 IHCWSSPSTGV----------GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 258 l~h~~d~~~~l----------G~lvi~t~~~~~l~el~~~ 287 (288)
+|++.|....+ |.|+.+-++.++|.||+-+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence 99998877666 9999999999999999753
No 128
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.82 E-value=8e-09 Score=87.77 Aligned_cols=94 Identities=21% Similarity=0.166 Sum_probs=66.4
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~ 259 (288)
.++|+|||+|..++.+++... +|+|+|+|+.||+.|++..... .......+...+...|--.+++.|+|++..++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhHH
Confidence 899999999988888888866 9999999999999998752211 001112222233333333389999999999999
Q ss_pred cCCCccccc-----------ceEEEEecCc
Q 023034 260 CWSSPSTGV-----------GVFFQVTLII 278 (288)
Q Consensus 260 h~~d~~~~l-----------G~lvi~t~~~ 278 (288)
++.. +++. |.+++-.+..
T Consensus 112 WFdl-e~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 112 WFDL-ERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hhch-HHHHHHHHHHcCCCCCEEEEEEccC
Confidence 8854 3333 5887777763
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.81 E-value=4.4e-08 Score=86.57 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=67.6
Q ss_pred hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 023034 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (288)
Q Consensus 171 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sf 249 (288)
..+.+.++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.++++++.. | ..++.++.+|+..++...+.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-G--VLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-C--CCcEEEecCCHHHhhhhccCC
Confidence 34566778999999999999999888764 2358999999999999999999887 2 357899999988776556679
Q ss_pred ceEEe
Q 023034 250 DAVHA 254 (288)
Q Consensus 250 D~V~~ 254 (288)
|+|++
T Consensus 142 D~Vl~ 146 (264)
T TIGR00446 142 DAILL 146 (264)
T ss_pred CEEEE
Confidence 99996
No 130
>PRK04457 spermidine synthase; Provisional
Probab=98.81 E-value=4.4e-08 Score=86.45 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEe
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA 254 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 254 (288)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++.... ...++.++.+|+.+. +-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999999998887899999999999999999876431 136899999998643 222468999997
Q ss_pred c
Q 023034 255 G 255 (288)
Q Consensus 255 ~ 255 (288)
.
T Consensus 143 D 143 (262)
T PRK04457 143 D 143 (262)
T ss_pred e
Confidence 5
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=6.2e-08 Score=91.89 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCC
Q 023034 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (288)
Q Consensus 169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (288)
....+...++.+|||+|||+|..+..+++.. ..++|+++|+|+.|++.++++++.. | ..++.++.+|+..++ +++
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g--~~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-G--ITIIETIEGDARSFS-PEE 317 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-C--CCeEEEEeCcccccc-cCC
Confidence 3445566678999999999999988887753 2359999999999999999999887 2 347899999998775 457
Q ss_pred ccceEEe
Q 023034 248 SIDAVHA 254 (288)
Q Consensus 248 sfD~V~~ 254 (288)
+||+|++
T Consensus 318 ~fD~Vl~ 324 (445)
T PRK14904 318 QPDAILL 324 (445)
T ss_pred CCCEEEE
Confidence 8999996
No 132
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.80 E-value=3e-08 Score=83.77 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=65.9
Q ss_pred HHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC
Q 023034 167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF 244 (288)
Q Consensus 167 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~ 244 (288)
+.+..++.. .++.+|||+|||+|.++..+..++. .+|+++|.++.+++.++++++.. + ..++.++.+|+.+. +.
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNALSFLAQ 117 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHHHHHhh
Confidence 344444432 3577999999999999987655554 59999999999999999998887 2 34799999998653 22
Q ss_pred CCCccceEEeccc
Q 023034 245 ASSSIDAVHAGAA 257 (288)
Q Consensus 245 ~~~sfD~V~~~~v 257 (288)
...+||+|++.=-
T Consensus 118 ~~~~fDlV~~DPP 130 (199)
T PRK10909 118 PGTPHNVVFVDPP 130 (199)
T ss_pred cCCCceEEEECCC
Confidence 3457999998644
No 133
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.80 E-value=4.5e-08 Score=85.84 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CC-CCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF-ASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~-~~~sfD~V~~~ 255 (288)
+.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++.. +..++++|+.+. +- ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 45899999999999999988766569999999999999999998765 246888998653 21 13579999986
Q ss_pred c
Q 023034 256 A 256 (288)
Q Consensus 256 ~ 256 (288)
-
T Consensus 161 P 161 (251)
T TIGR03704 161 A 161 (251)
T ss_pred C
Confidence 4
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=4.4e-08 Score=92.41 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=69.5
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (288)
.+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.++++++.. | ..++.+..+|+..++ +.
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~-g--~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL-K--LSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhhhhhhh
Confidence 34445677788999999999999998888863 3469999999999999999999887 2 346889999998776 45
Q ss_pred CCccceEEe
Q 023034 246 SSSIDAVHA 254 (288)
Q Consensus 246 ~~sfD~V~~ 254 (288)
+++||.|++
T Consensus 305 ~~~fD~Vl~ 313 (431)
T PRK14903 305 QDTFDRILV 313 (431)
T ss_pred hccCCEEEE
Confidence 678999996
No 135
>PTZ00146 fibrillarin; Provisional
Probab=98.78 E-value=4.6e-08 Score=86.70 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=60.4
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS 248 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s 248 (288)
+...++.+|||+|||+|.++..+++.. +...|+++|+++.|++...+.++.. .++.++.+|+... .....+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCC
Confidence 445678999999999999999999883 4568999999998665555443332 5788899998642 223458
Q ss_pred cceEEeccc
Q 023034 249 IDAVHAGAA 257 (288)
Q Consensus 249 fD~V~~~~v 257 (288)
||+|++...
T Consensus 203 vDvV~~Dva 211 (293)
T PTZ00146 203 VDVIFADVA 211 (293)
T ss_pred CCEEEEeCC
Confidence 999999764
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.76 E-value=8.2e-08 Score=81.00 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=63.8
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C--CCCCccceEEe
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHA 254 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~sfD~V~~ 254 (288)
...+||||||.|.++..+++..|+..++|+|+....+..+.+++...+ ..|+.++++|+..+ + ++++++|.|+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEE
Confidence 338999999999999999999999999999999999999999988872 78999999999873 2 56789999988
Q ss_pred cc
Q 023034 255 GA 256 (288)
Q Consensus 255 ~~ 256 (288)
.+
T Consensus 95 ~F 96 (195)
T PF02390_consen 95 NF 96 (195)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 137
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.76 E-value=3.6e-08 Score=93.17 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=69.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--- 242 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--- 242 (288)
++.+.+++...++.+|||+|||+|.++..+++... +|+|+|+++.|++.|++++... + ..++.++.+|+.+.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~-~--~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN-G--IANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh-C--CCceEEEeCCHHHHHHH
Confidence 44555666656678999999999999999998865 9999999999999999998876 2 46899999998652
Q ss_pred -CCCCCccceEEe
Q 023034 243 -PFASSSIDAVHA 254 (288)
Q Consensus 243 -p~~~~sfD~V~~ 254 (288)
++.+++||+|++
T Consensus 356 ~~~~~~~~D~vi~ 368 (431)
T TIGR00479 356 QPWAGQIPDVLLL 368 (431)
T ss_pred HHhcCCCCCEEEE
Confidence 244567999997
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=9.6e-08 Score=90.61 Aligned_cols=84 Identities=26% Similarity=0.241 Sum_probs=69.0
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--C
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F 244 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~ 244 (288)
.+...+...++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++++.. | ..++.++++|+..++ +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL-G--LTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCCcccccchh
Confidence 44456666778899999999999999998874 4579999999999999999999887 2 345899999998763 3
Q ss_pred CCCccceEEec
Q 023034 245 ASSSIDAVHAG 255 (288)
Q Consensus 245 ~~~sfD~V~~~ 255 (288)
+ ++||+|++.
T Consensus 318 ~-~~fD~Vl~D 327 (444)
T PRK14902 318 A-EKFDKILVD 327 (444)
T ss_pred c-ccCCEEEEc
Confidence 3 789999974
No 139
>PLN02672 methionine S-methyltransferase
Probab=98.73 E-value=5.6e-08 Score=99.53 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CCCCCEEEEEecCCCCCC
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------FPKENFLLVRADISRLPF 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-------------~~~~~i~~~~~d~~~lp~ 244 (288)
+.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++..+. ....++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999988767999999999999999999986410 012469999999876431
Q ss_pred C-CCccceEEecc
Q 023034 245 A-SSSIDAVHAGA 256 (288)
Q Consensus 245 ~-~~sfD~V~~~~ 256 (288)
. ...||+|+++=
T Consensus 199 ~~~~~fDlIVSNP 211 (1082)
T PLN02672 199 DNNIELDRIVGCI 211 (1082)
T ss_pred ccCCceEEEEECC
Confidence 1 23699999963
No 140
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=1.2e-07 Score=74.60 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=63.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
+.+.+.+...++.+|||||||+|. ++..|++.|. .|+++|+++..++.++++ .+.++++|+.+..+.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHH
Confidence 445555655567899999999996 8889998887 999999999999988875 467899999876654
Q ss_pred -CCccceEEeccc
Q 023034 246 -SSSIDAVHAGAA 257 (288)
Q Consensus 246 -~~sfD~V~~~~v 257 (288)
-+.+|+|.+..-
T Consensus 74 ~y~~a~liysirp 86 (134)
T PRK04148 74 IYKNAKLIYSIRP 86 (134)
T ss_pred HHhcCCEEEEeCC
Confidence 467899998654
No 141
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.6e-08 Score=77.39 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=71.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+.+-.+.-.|+.++|+|||.|.++....-..+ ..|+|+|+++..++.+++++... ..++++.++|+..+-+..
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence 3344444555789999999999999966654443 68999999999999999998887 678899999999998888
Q ss_pred CccceEEecccc
Q 023034 247 SSIDAVHAGAAI 258 (288)
Q Consensus 247 ~sfD~V~~~~vl 258 (288)
+.||.++.+--+
T Consensus 113 g~fDtaviNppF 124 (185)
T KOG3420|consen 113 GIFDTAVINPPF 124 (185)
T ss_pred CeEeeEEecCCC
Confidence 999999986544
No 142
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.67 E-value=8.4e-08 Score=89.34 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=68.2
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023034 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (288)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~ 237 (288)
|++-...+...+...+. ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++... |....++.++++
T Consensus 203 G~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~ 278 (396)
T PRK15128 203 GYYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRD 278 (396)
T ss_pred CcChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEc
Confidence 33333333333333333 378999999999999887665543 59999999999999999999887 322247899999
Q ss_pred cCCCCC--C--CCCccceEEec
Q 023034 238 DISRLP--F--ASSSIDAVHAG 255 (288)
Q Consensus 238 d~~~lp--~--~~~sfD~V~~~ 255 (288)
|+.+.. + ..++||+|++.
T Consensus 279 D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 279 DVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred cHHHHHHHHHhcCCCCCEEEEC
Confidence 987642 1 24689999986
No 143
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=5.9e-08 Score=82.51 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=80.4
Q ss_pred eEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCCCCccceEE
Q 023034 180 NIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAVH 253 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~sfD~V~ 253 (288)
+|||||||.|.....+.+..++ ..+++.|.|+.+++..+++.... ..++...+.|+.. -|...+++|.|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceEE
Confidence 8999999999999888887665 78999999999999999875543 3555555566542 356779999999
Q ss_pred eccccccCCCc--cccc----------ceEEEEecCcccHHHHH
Q 023034 254 AGAAIHCWSSP--STGV----------GVFFQVTLIIHVVEDLA 285 (288)
Q Consensus 254 ~~~vl~h~~d~--~~~l----------G~lvi~t~~~~~l~el~ 285 (288)
+.+||.-++-- ..++ |.+++.+++...+.+|+
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 99999887521 1122 99999999998888775
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=8.7e-08 Score=83.20 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=68.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (288)
.+.+..+....++.+|||||||+|..+..++.. ...++++++|+++.+++.|++++++. |. ..++.++.+|+.+. +
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl-~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GV-DHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEccHHHHHH
Confidence 344444445555789999999999988888776 34579999999999999999999887 32 36799999999763 2
Q ss_pred -----CCCCccceEEecc
Q 023034 244 -----FASSSIDAVHAGA 256 (288)
Q Consensus 244 -----~~~~sfD~V~~~~ 256 (288)
.+.++||+|+...
T Consensus 135 ~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred HHHhCCCCCCCCEEEECC
Confidence 1246899999863
No 145
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.65 E-value=1.6e-07 Score=85.43 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-------CCCCEEEEEecCCCC------C
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------PKENFLLVRADISRL------P 243 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~-------~~~~i~~~~~d~~~l------p 243 (288)
++.+|||+|||.|.-+.-+...+. ..++|+|++...++.|+++..+.... ..-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 688999999998887666666654 59999999999999999998331000 013466788887632 2
Q ss_pred CCCCccceEEeccccccCCCccccc--------------ceEEEEecCcccH
Q 023034 244 FASSSIDAVHAGAAIHCWSSPSTGV--------------GVFFQVTLIIHVV 281 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~~d~~~~l--------------G~lvi~t~~~~~l 281 (288)
.....||+|-|-++||+.=..+... |.|+.+++..+.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 2235999999999999864433322 7777777766655
No 146
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.64 E-value=9.9e-08 Score=88.48 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=65.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-C
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-A 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~ 245 (288)
..+..++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++++.. + ..++.++.+|+.+... .
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~-~--~~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML-G--LDNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHHhc
Confidence 3344454434567999999999999999997765 9999999999999999998876 2 3489999999875421 1
Q ss_pred CCccceEEec
Q 023034 246 SSSIDAVHAG 255 (288)
Q Consensus 246 ~~sfD~V~~~ 255 (288)
.++||+|++.
T Consensus 298 ~~~~D~vi~D 307 (374)
T TIGR02085 298 MSAPELVLVN 307 (374)
T ss_pred CCCCCEEEEC
Confidence 2469999884
No 147
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.5e-07 Score=80.66 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.....++..|||||+|.|.++..|.+++. +|+++|+++.+++..++++.. ..++.++.+|+...+++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcch
Confidence 56778888777789999999999999999999998 899999999999999998653 47899999999998876
Q ss_pred CC-ccceEEecc
Q 023034 246 SS-SIDAVHAGA 256 (288)
Q Consensus 246 ~~-sfD~V~~~~ 256 (288)
.- .++.|+++-
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 53 578888764
No 148
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.64 E-value=2e-07 Score=81.12 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=75.3
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023034 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (288)
Q Consensus 169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s 248 (288)
+..........+|||||+|.|.++..++++.|+.+++..|. |..++.+++ ..++.++.+|+. -+++.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence 33444444567899999999999999999999999999999 888888887 368999999998 55554
Q ss_pred cceEEeccccccCCCccccc-----------c---eEEEEecC
Q 023034 249 IDAVHAGAAIHCWSSPSTGV-----------G---VFFQVTLI 277 (288)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l-----------G---~lvi~t~~ 277 (288)
+|+++..++||+++|.+... | +|++..+.
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99999999999998765433 4 88887765
No 149
>PRK00811 spermidine synthase; Provisional
Probab=98.62 E-value=2.5e-07 Score=82.61 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCCCEEEEEecCCCC-CCCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLVRADISRL-PFASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~--~~~~i~~~~~d~~~l-p~~~~sfD~V~ 253 (288)
.+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+...... ..+++.++.+|+... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 467899999999999999988744468999999999999999988643111 257899999998753 33467899999
Q ss_pred eccc
Q 023034 254 AGAA 257 (288)
Q Consensus 254 ~~~v 257 (288)
+...
T Consensus 156 ~D~~ 159 (283)
T PRK00811 156 VDST 159 (283)
T ss_pred ECCC
Confidence 8643
No 150
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.60 E-value=2e-07 Score=77.66 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~ 236 (288)
...+.......++..|||--||+|.++.+.+..+.+.. ++|.|+++.+++.|+++++.. | ....+.+.+
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g-~~~~i~~~~ 94 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-G-VEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T--CGGEEEEE
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-c-cCCceEEEe
Confidence 34555555666788999999999999998887765445 899999999999999999887 2 245689999
Q ss_pred ecCCCCCCCCCccceEEeccc
Q 023034 237 ADISRLPFASSSIDAVHAGAA 257 (288)
Q Consensus 237 ~d~~~lp~~~~sfD~V~~~~v 257 (288)
.|+.++++.++++|+|+++--
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP 115 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP 115 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--
T ss_pred cchhhcccccCCCCEEEECcc
Confidence 999999988899999999643
No 151
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.57 E-value=2.8e-07 Score=82.25 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=77.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (288)
.+.+++.+.+.++..+||.+||.|..+..+++..+ .++|+|+|.++.|++.|++++.. ..++.++++|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence 45667777777788999999999999999999864 57999999999999999988643 258999999998753
Q ss_pred -CCC--CccceEEecccc--ccCCCccccc
Q 023034 244 -FAS--SSIDAVHAGAAI--HCWSSPSTGV 268 (288)
Q Consensus 244 -~~~--~sfD~V~~~~vl--~h~~d~~~~l 268 (288)
.++ .++|.|++.... +++.++++-+
T Consensus 83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~RGF 112 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGVSSPQLDDAERGF 112 (296)
T ss_pred HHHcCCCccCEEEECCCccccccCCCcCCc
Confidence 112 279999996544 4567777765
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.57 E-value=3.6e-07 Score=82.55 Aligned_cols=81 Identities=11% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE-ecCCCCC----CCCCccce
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA 251 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~-~d~~~lp----~~~~sfD~ 251 (288)
.+.++||||||+|.+...++.+.+.++++|+|+++.+++.|+++++... ....++.+.. .|...+. .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5689999999999888888777556799999999999999999998751 1235677654 3333221 24678999
Q ss_pred EEecccc
Q 023034 252 VHAGAAI 258 (288)
Q Consensus 252 V~~~~vl 258 (288)
|+|+=-+
T Consensus 193 ivcNPPf 199 (321)
T PRK11727 193 TLCNPPF 199 (321)
T ss_pred EEeCCCC
Confidence 9997443
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=2.1e-07 Score=92.87 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-CCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 255 (288)
+.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.. |....++.++++|+.+. .-..++||+|++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 78999999999999999998765 47999999999999999999887 33225799999998653 1114689999984
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.53 E-value=3.2e-07 Score=82.26 Aligned_cols=78 Identities=17% Similarity=0.329 Sum_probs=66.0
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
...++.|||||||+|.++...++.|+ .+|+++|.|. +++.|++.+..+ .....++++.+.++++.+|..+.|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEee
Confidence 34589999999999999999999996 7999999987 559999888776 2345689999999987666789999999
Q ss_pred cc
Q 023034 255 GA 256 (288)
Q Consensus 255 ~~ 256 (288)
-+
T Consensus 134 EW 135 (346)
T KOG1499|consen 134 EW 135 (346)
T ss_pred hh
Confidence 54
No 155
>PRK03612 spermidine synthase; Provisional
Probab=98.48 E-value=5.9e-07 Score=86.77 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=62.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HHhcC--CCCCCCEEEEEecCCCC-CCCCCccce
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA 251 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~--~~~~~--g~~~~~i~~~~~d~~~l-p~~~~sfD~ 251 (288)
++++|||||||+|..++.+.+.....+++++|+++++++.++++ +.... ....++++++.+|+.+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46789999999999999998764336999999999999999983 32210 11246899999998763 333578999
Q ss_pred EEecccc
Q 023034 252 VHAGAAI 258 (288)
Q Consensus 252 V~~~~vl 258 (288)
|++...-
T Consensus 377 Ii~D~~~ 383 (521)
T PRK03612 377 IIVDLPD 383 (521)
T ss_pred EEEeCCC
Confidence 9997543
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.48 E-value=5.1e-07 Score=76.92 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE-ecCCCC-
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL- 242 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~-~d~~~l- 242 (288)
.+.+...+.....++|||||.+.|+-+.+++...+ +++++.+|+++++++.|++++++. | ...++.++. +|+.+.
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g-~~~~i~~~~~gdal~~l 125 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-G-VDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-C-CcceEEEEecCcHHHHH
Confidence 34444455555688999999999999999999876 789999999999999999999998 3 344588888 476543
Q ss_pred C-CCCCccceEEeccc
Q 023034 243 P-FASSSIDAVHAGAA 257 (288)
Q Consensus 243 p-~~~~sfD~V~~~~v 257 (288)
. ...++||+|+.-..
T Consensus 126 ~~~~~~~fDliFIDad 141 (219)
T COG4122 126 SRLLDGSFDLVFIDAD 141 (219)
T ss_pred HhccCCCccEEEEeCC
Confidence 2 45789999998543
No 157
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.47 E-value=5.9e-07 Score=77.29 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=68.0
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS 248 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s 248 (288)
.........+||||||.|.++..+++..|...++|||+....+..|.+++.+.+ ..|+.+++.|+..+ -+++++
T Consensus 43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~s 119 (227)
T COG0220 43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGS 119 (227)
T ss_pred HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCC
Confidence 333333468999999999999999999999999999999999999999998872 23999999999764 245669
Q ss_pred cceEEecc
Q 023034 249 IDAVHAGA 256 (288)
Q Consensus 249 fD~V~~~~ 256 (288)
.|-|+.++
T Consensus 120 l~~I~i~F 127 (227)
T COG0220 120 LDKIYINF 127 (227)
T ss_pred eeEEEEEC
Confidence 99999854
No 158
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.46 E-value=8.4e-07 Score=76.80 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=69.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
...++||||+|.|..+..++.... +|++.|.|+.|....+++ +.+++ +..++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence 457899999999999999998877 999999999997766654 33333 3333333356899999999
Q ss_pred ccccCCCccccc----------ceEEEEecCc
Q 023034 257 AIHCWSSPSTGV----------GVFFQVTLII 278 (288)
Q Consensus 257 vl~h~~d~~~~l----------G~lvi~t~~~ 278 (288)
+|..-.+|...| |.++++...|
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 999999998888 9999887554
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.45 E-value=6.9e-07 Score=77.00 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCE-EEEEecCCC-----
Q 023034 169 MKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISR----- 241 (288)
Q Consensus 169 l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i-~~~~~d~~~----- 241 (288)
+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|++++|+....+. ..++ .+...|+..
T Consensus 66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~ 136 (228)
T TIGR00478 66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPAD 136 (228)
T ss_pred HHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhH
Confidence 3444332 4578999999999999999999864 5899999999888762221 1222 123333332
Q ss_pred CCCCCCccceEEeccccccCCCccccc
Q 023034 242 LPFASSSIDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 242 lp~~~~sfD~V~~~~vl~h~~d~~~~l 268 (288)
++..-..+|+++++..+ -+++....+
T Consensus 137 ~~~d~~~~DvsfiS~~~-~l~~i~~~l 162 (228)
T TIGR00478 137 IFPDFATFDVSFISLIS-ILPELDLLL 162 (228)
T ss_pred cCCCceeeeEEEeehHh-HHHHHHHHh
Confidence 22233478988887654 244444433
No 160
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.43 E-value=2.2e-06 Score=69.08 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023034 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (288)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d 238 (288)
+......+.+...+....|..|||+|.|||-++..+.+++ .+..++.+|+|++.+....+. .+.+.++.+|
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~gd 102 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIINGD 102 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccccc
Confidence 3444456777778888889999999999999999999986 457899999999999998887 5667789999
Q ss_pred CCCCC-----CCCCccceEEeccccccCCCccccc------------ceEEEEecCcc
Q 023034 239 ISRLP-----FASSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLIIH 279 (288)
Q Consensus 239 ~~~lp-----~~~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~~~ 279 (288)
+.++. +.+..||.|++.--+-.+|-..+.- |.++.-++++-
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 98764 5667899999988776665432211 77887777643
No 161
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=75.43 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE----ecCC-CCCCCCCccceE
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR----ADIS-RLPFASSSIDAV 252 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~----~d~~-~lp~~~~sfD~V 252 (288)
+..|||+|||+|..+..+....++++++++|.|+.++..|.++++..+ ....+..+. .|.. ..+..+++.|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEE
Confidence 557999999999999999998888999999999999999999988762 234555553 3332 345667899999
Q ss_pred Eecc
Q 023034 253 HAGA 256 (288)
Q Consensus 253 ~~~~ 256 (288)
+++-
T Consensus 227 vsNP 230 (328)
T KOG2904|consen 227 VSNP 230 (328)
T ss_pred ecCC
Confidence 9974
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.42 E-value=1.2e-06 Score=72.45 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccc
Q 023034 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID 250 (288)
Q Consensus 175 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD 250 (288)
...+.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+-. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3458899999999999999999983346999999999 9999999988752112466777777765421 2446899
Q ss_pred eEEeccccccCC
Q 023034 251 AVHAGAAIHCWS 262 (288)
Q Consensus 251 ~V~~~~vl~h~~ 262 (288)
+|++..++..-.
T Consensus 122 ~IlasDv~Y~~~ 133 (173)
T PF10294_consen 122 VILASDVLYDEE 133 (173)
T ss_dssp EEEEES--S-GG
T ss_pred EEEEecccchHH
Confidence 999999998643
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.42 E-value=4e-07 Score=77.28 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-----CCCCc
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSS 248 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-----~~~~s 248 (288)
....+|||||+++|+-+.++++..+ +++|+.+|+++..++.|++.++.. | ...+++++.+|+.+. + -+.++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g-~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-G-LDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-T-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-C-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3467999999999999999998754 579999999999999999999886 2 246899999998652 2 11368
Q ss_pred cceEEeccc
Q 023034 249 IDAVHAGAA 257 (288)
Q Consensus 249 fD~V~~~~v 257 (288)
||+|+.-.-
T Consensus 122 fD~VFiDa~ 130 (205)
T PF01596_consen 122 FDFVFIDAD 130 (205)
T ss_dssp EEEEEEEST
T ss_pred eeEEEEccc
Confidence 999998553
No 164
>PRK01581 speE spermidine synthase; Validated
Probab=98.42 E-value=1.7e-06 Score=78.91 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=61.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HHhc--CCCCCCCEEEEEecCCC-CCCCCCccce
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISR-LPFASSSIDA 251 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~--~~~~--~g~~~~~i~~~~~d~~~-lp~~~~sfD~ 251 (288)
...+||+||||+|..++.+.+..+..+|+++|+++.|++.|++. +... +....+++.++.+|+.+ ++-..+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 35699999999999999998876556999999999999999972 1111 01125789999999886 3444578999
Q ss_pred EEec
Q 023034 252 VHAG 255 (288)
Q Consensus 252 V~~~ 255 (288)
|++.
T Consensus 230 IIvD 233 (374)
T PRK01581 230 IIID 233 (374)
T ss_pred EEEc
Confidence 9987
No 165
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.40 E-value=2.1e-06 Score=74.39 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=70.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.|.+....++++.|||||.|||.++..+.+.+. +|+++|+++.|+....++.+.- .......++.+|....++
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gt--p~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGT--PKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCC--CccceeeEEecccccCCC-
Confidence 45666666777899999999999999999999998 9999999999999999987654 113678899999987754
Q ss_pred CCccceEEecc
Q 023034 246 SSSIDAVHAGA 256 (288)
Q Consensus 246 ~~sfD~V~~~~ 256 (288)
..||.++++.
T Consensus 122 -P~fd~cVsNl 131 (315)
T KOG0820|consen 122 -PRFDGCVSNL 131 (315)
T ss_pred -cccceeeccC
Confidence 3689999854
No 166
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.39 E-value=3.1e-06 Score=75.04 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCCCCEEEEEecCCC-CCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISR-LPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g-~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~ 255 (288)
+.+||+||||+|.++..+.+..+..+++++|+++.+++.|++.+....+ ....+++++.+|+.. +....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4599999999999999998876446899999999999999998755311 124678888888754 22225789999986
Q ss_pred cc
Q 023034 256 AA 257 (288)
Q Consensus 256 ~v 257 (288)
..
T Consensus 153 ~~ 154 (270)
T TIGR00417 153 ST 154 (270)
T ss_pred CC
Confidence 54
No 167
>PLN02366 spermidine synthase
Probab=98.39 E-value=1.8e-06 Score=77.76 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-C-CCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-P-FASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p-~~~~sfD~V~ 253 (288)
.+.+||+||||.|..++.+.+.....+|+.+|+++.+++.|++.+.... +...++++++.+|+... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4679999999999999999887434689999999999999999876531 12357899999997532 1 2356899999
Q ss_pred eccc
Q 023034 254 AGAA 257 (288)
Q Consensus 254 ~~~v 257 (288)
+...
T Consensus 171 ~D~~ 174 (308)
T PLN02366 171 VDSS 174 (308)
T ss_pred EcCC
Confidence 8543
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.39 E-value=1.5e-06 Score=78.26 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPF 244 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~lp~ 244 (288)
...+.+.-...+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.|++..+ .....+... |+..+|+
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCCC
Confidence 45556666677899999999999999999998887 99999999999999999998872 355655666 9999999
Q ss_pred CCCccceEEec
Q 023034 245 ASSSIDAVHAG 255 (288)
Q Consensus 245 ~~~sfD~V~~~ 255 (288)
++.++|+|.+-
T Consensus 261 ~~~~vdaIatD 271 (347)
T COG1041 261 RDNSVDAIATD 271 (347)
T ss_pred CCCccceEEec
Confidence 98899999983
No 169
>PLN02476 O-methyltransferase
Probab=98.36 E-value=2.8e-06 Score=75.16 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (288)
.+.+.......++++|||||+++|+.+.+++... ..++++.+|.++++++.|++++++. |. ..+++++.+|+.+. +
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl-~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GV-SHKVNVKHGLAAESLK 184 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHH
Confidence 3444444455567899999999999999998763 3568999999999999999999987 32 36899999998652 2
Q ss_pred -C----CCCccceEEecc
Q 023034 244 -F----ASSSIDAVHAGA 256 (288)
Q Consensus 244 -~----~~~sfD~V~~~~ 256 (288)
+ ..++||+|+...
T Consensus 185 ~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred HHHhcccCCCCCEEEECC
Confidence 1 246899999854
No 170
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.34 E-value=1.2e-06 Score=80.70 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
++.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.|++.|++++... + ..++.++.+|+.+
T Consensus 187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~-~--~~~v~~~~~d~~~ 256 (353)
T TIGR02143 187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN-N--IDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEEcCHHH
Confidence 44455555432 34799999999999999988765 9999999999999999998876 2 3579999999875
No 171
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.5e-06 Score=71.26 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=78.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-C-CCCEEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCEEEEEe
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRA 237 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~-~~~~v~gvD~s~~~l~~A~~~~~~~~-------g~~~~~i~~~~~ 237 (288)
+.|..+| .+|...||+|.|+|+++..++.. + .+..++|||.-++.++.+++++.+.. .....++.++.+
T Consensus 74 e~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 74 EYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 4444444 45999999999999999888865 3 32345999999999999999997751 011356788999
Q ss_pred cCCCCCCCCCccceEEeccccccCCCccccc------ceEEEEec
Q 023034 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGV------GVFFQVTL 276 (288)
Q Consensus 238 d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l------G~lvi~t~ 276 (288)
|....--+...||.|++...-.-++ +..+ |++++-..
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa~~~p--q~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAASELP--QELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccccCCccCCcceEEEccCccccH--HHHHHhhccCCeEEEeec
Confidence 9998877889999999986655443 2333 77776554
No 172
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.33 E-value=2.6e-06 Score=75.82 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~ 253 (288)
....++.|||+|||+|.++...++.|. .+|+++|.|+ |.++|++.++.+ ....++.++.+.++++.++ ++.|+|+
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVII 248 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEE
Confidence 344688999999999999999999987 6999999876 999999988764 4568899999999988775 6789999
Q ss_pred e
Q 023034 254 A 254 (288)
Q Consensus 254 ~ 254 (288)
+
T Consensus 249 S 249 (517)
T KOG1500|consen 249 S 249 (517)
T ss_pred e
Confidence 7
No 173
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.33 E-value=4e-06 Score=70.42 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-C-CCC-ccceE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV 252 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-~~~-sfD~V 252 (288)
.+.+|||++||+|.++..++.++. ..|+++|.++.+++.++++++.. + ...++.++.+|+... . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~-~~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-K-SGEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-C-CcccEEEEehhHHHHHHHhhccCCCceEE
Confidence 478999999999999999999986 58999999999999999998876 2 224688999998542 2 1 122 47888
Q ss_pred Ee
Q 023034 253 HA 254 (288)
Q Consensus 253 ~~ 254 (288)
+.
T Consensus 126 ~~ 127 (189)
T TIGR00095 126 YL 127 (189)
T ss_pred EE
Confidence 77
No 174
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.33 E-value=1.8e-06 Score=79.82 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
++.+.+++... +.+|||++||+|.++..+++... +|+|+|.++.+++.|++++... + ..++.++.+|+.+
T Consensus 196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~-~--~~~v~~~~~d~~~ 265 (362)
T PRK05031 196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN-G--IDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEECCHHH
Confidence 44455555432 35799999999999999988765 9999999999999999998876 2 3589999999865
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.31 E-value=6.4e-06 Score=77.93 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEE
Q 023034 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~ 253 (288)
+..|||||||+|.++...++.+ ...+|+++|-++.+....+++++.. ....+|+++.+|++++..+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5789999999999988777664 2369999999999888877765554 2457899999999998764 4899999
Q ss_pred e
Q 023034 254 A 254 (288)
Q Consensus 254 ~ 254 (288)
+
T Consensus 264 S 264 (448)
T PF05185_consen 264 S 264 (448)
T ss_dssp E
T ss_pred E
Confidence 8
No 176
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.6e-06 Score=80.07 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
.++.+.+++...++.+|||+=||.|.++..+++... +|+|+|+++.+++.|+++++.++ ..|+.|..+++++...
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence 366677788877788999999999999999998876 99999999999999999999873 5669999999987653
Q ss_pred C---CCccceEEe
Q 023034 245 A---SSSIDAVHA 254 (288)
Q Consensus 245 ~---~~sfD~V~~ 254 (288)
. ...+|+|+.
T Consensus 356 ~~~~~~~~d~Vvv 368 (432)
T COG2265 356 AWWEGYKPDVVVV 368 (432)
T ss_pred hccccCCCCEEEE
Confidence 3 357899998
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.28 E-value=3.6e-06 Score=77.85 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 023034 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (288)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~ 236 (288)
.|++-...+.......+- .|++|||+-|=||.++..++..|. .+|++||+|...++.|+++++.+ |....++.|++
T Consensus 199 TGfFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~ 274 (393)
T COG1092 199 TGFFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIV 274 (393)
T ss_pred ceeeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeeh
Confidence 344444444333333332 289999999999999999998886 59999999999999999999998 56667789999
Q ss_pred ecCCCC----CCCCCccceEEe
Q 023034 237 ADISRL----PFASSSIDAVHA 254 (288)
Q Consensus 237 ~d~~~l----p~~~~sfD~V~~ 254 (288)
+|+.+. .-...+||+|+.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEE
Confidence 998753 223458999998
No 178
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.27 E-value=4.9e-06 Score=73.77 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCCCEEEEEecCCC------CCCCCC
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISR------LPFASS 247 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~---~~~~i~~~~~d~~~------lp~~~~ 247 (288)
++..++|+|||.|.-+.-+-+.+. ..++|+||++..+++|+++.....+- ..-.+.|+.+|-.. +++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 478899999999988877777765 58999999999999999998764110 01246788888642 456677
Q ss_pred ccceEEeccccccC
Q 023034 248 SIDAVHAGAAIHCW 261 (288)
Q Consensus 248 sfD~V~~~~vl~h~ 261 (288)
+||+|-|-+++|+-
T Consensus 196 ~fDivScQF~~HYa 209 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYA 209 (389)
T ss_pred CcceeeeeeeEeee
Confidence 79999999999973
No 179
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.26 E-value=5.2e-06 Score=70.12 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=60.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
.++.+.. .++..|||+.||-|.++..+++.+....|+++|+++..++..+++++.+ .....+..+.+|+..+.. .
T Consensus 93 ~Ri~~~v--~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~-~ 167 (200)
T PF02475_consen 93 RRIANLV--KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP-E 167 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG----T
T ss_pred HHHHhcC--CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC-c
Confidence 3444544 3488999999999999999999555569999999999999999999886 235678999999988765 7
Q ss_pred CccceEEecc
Q 023034 247 SSIDAVHAGA 256 (288)
Q Consensus 247 ~sfD~V~~~~ 256 (288)
+.||.|++..
T Consensus 168 ~~~drvim~l 177 (200)
T PF02475_consen 168 GKFDRVIMNL 177 (200)
T ss_dssp T-EEEEEE--
T ss_pred cccCEEEECC
Confidence 8999999865
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.8e-05 Score=64.74 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
.....+||||||+|..+..+++. ++++.+.++|+++.+++...+.+..+ ..++..++.|+..-- ..++.|+++.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccEEEE
Confidence 33668999999999999998887 67789999999999999998888776 456888999886432 2388898887
Q ss_pred cc
Q 023034 255 GA 256 (288)
Q Consensus 255 ~~ 256 (288)
+-
T Consensus 117 NP 118 (209)
T KOG3191|consen 117 NP 118 (209)
T ss_pred CC
Confidence 64
No 181
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.22 E-value=5.5e-06 Score=76.27 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
.++.+.+++...++ .|||+-||.|.++..+++... +|+|+|.++.+++.|+++++..+ ..++.|+.++++++
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHC
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccch
Confidence 36677778876655 899999999999999999887 99999999999999999999872 57899998877543
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.21 E-value=8.8e-06 Score=71.85 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=68.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
.+.+.+.+...++..|||||.|.|.++..+.+.+. +++++|+++.+++..++++.. ..++.++.+|+..+...
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGG
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccH
Confidence 46777788777899999999999999999999985 999999999999999997653 47899999999988755
Q ss_pred C---CccceEEecc
Q 023034 246 S---SSIDAVHAGA 256 (288)
Q Consensus 246 ~---~sfD~V~~~~ 256 (288)
. .....|+++-
T Consensus 92 ~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 92 DLLKNQPLLVVGNL 105 (262)
T ss_dssp GHCSSSEEEEEEEE
T ss_pred HhhcCCceEEEEEe
Confidence 4 3445566543
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.20 E-value=2.4e-06 Score=80.03 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=67.1
Q ss_pred HHHHHhhcCC----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCCCEEEEEec
Q 023034 166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (288)
Q Consensus 166 ~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d 238 (288)
++.|.+.+.. +.-..+||||||+|.|+.+|.+++- .+..+ |..+.+++.|-++ | +..+.+-
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR-----G-----vpa~~~~ 169 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER-----G-----VPAMIGV 169 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc-----C-----cchhhhh
Confidence 3445555543 2223589999999999999999864 33332 4445566666665 2 2233333
Q ss_pred --CCCCCCCCCccceEEeccccccCCCc--------cccc---ceEEEEecCc
Q 023034 239 --ISRLPFASSSIDAVHAGAAIHCWSSP--------STGV---GVFFQVTLII 278 (288)
Q Consensus 239 --~~~lp~~~~sfD~V~~~~vl~h~~d~--------~~~l---G~lvi~t~~~ 278 (288)
...|||++++||+|+|..++-.+..- +++| |+|+++.+-.
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 46899999999999999888765444 3333 8888887643
No 184
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.19 E-value=9.6e-06 Score=72.26 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCCcHHHHHHHHhhcCC-CCCCeEEEEcCccch----HHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHh------
Q 023034 159 FPGPEKEFELMKGYLKP-VLGGNIIDASCGSGL----FSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQ------ 223 (288)
Q Consensus 159 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~----~~~~l~~~~----~~~~v~gvD~s~~~l~~A~~~~~~------ 223 (288)
|+.....++.+.+.+.. ...-+|+..||+||. ++..+.+.. ...+|+|+|+|+.+++.|++-.-.
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~ 175 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT 175 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence 33333444555444322 224689999999994 334444432 135899999999999999874200
Q ss_pred ------------c----CCC------CCCCEEEEEecCCCCCCC-CCccceEEeccccccCCCc
Q 023034 224 ------------E----SNF------PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP 264 (288)
Q Consensus 224 ------------~----~g~------~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~vl~h~~d~ 264 (288)
. +|. .-..+.|.+.|+.+.+++ .+.||+|+|.+++.|+...
T Consensus 176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~ 239 (287)
T PRK10611 176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT 239 (287)
T ss_pred CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence 0 000 114568888998875543 5789999999999999654
No 185
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.19 E-value=5e-06 Score=75.13 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 023034 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230 (288)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~ 230 (288)
.+++|....+.+..++...++.+|||-+||+|.++..+.+. .....++|+|+++.++..|+-++... |....
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~ 105 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDNS 105 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHCB
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-ccccc
Confidence 47888888899999998877889999999999999888773 24469999999999999999877554 22234
Q ss_pred CEEEEEecCCCCCCC--CCccceEEecc
Q 023034 231 NFLLVRADISRLPFA--SSSIDAVHAGA 256 (288)
Q Consensus 231 ~i~~~~~d~~~lp~~--~~sfD~V~~~~ 256 (288)
...+..+|....+.. ...||+|+++-
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NP 133 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNP 133 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE-
T ss_pred cccccccccccccccccccccccccCCC
Confidence 456788887655433 47899999964
No 186
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1e-06 Score=58.30 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=40.0
Q ss_pred ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccC
Q 023034 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~ 121 (288)
.-+++++||.|+++|.... +.+.+.|+.|+..|++++|++.++.+.
T Consensus 4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence 3578999999999988764 456999999999999999999998754
No 187
>PRK11827 hypothetical protein; Provisional
Probab=98.16 E-value=1e-06 Score=58.92 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=39.0
Q ss_pred cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeeeeeccCC
Q 023034 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG 122 (288)
Q Consensus 68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~ 122 (288)
-+++++||.|+++|.... ....+.|..|+..|++++|++.++.+..
T Consensus 5 LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 5 LLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHHh
Confidence 468899999999998643 3467999999999999999999987643
No 188
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.15 E-value=3.1e-06 Score=68.95 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=54.6
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCc-cceEEec
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG 255 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~s-fD~V~~~ 255 (288)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.+++-.| ...++.++++|+.++. +.... +|+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999987 99999999999999999998872 3568999999987652 22222 8999973
No 189
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.14 E-value=4.2e-06 Score=70.83 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
...+.||.|+|.|+.+..+.-... .+|.-+|+.+.+++.|++.+... ...-..+++.-+++...+.++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 356899999999999987754432 49999999999999999886653 13446777777887765668999999999
Q ss_pred ccccCCCccc
Q 023034 257 AIHCWSSPST 266 (288)
Q Consensus 257 vl~h~~d~~~ 266 (288)
++.|+.|.+-
T Consensus 131 ~lghLTD~dl 140 (218)
T PF05891_consen 131 CLGHLTDEDL 140 (218)
T ss_dssp -GGGS-HHHH
T ss_pred hhccCCHHHH
Confidence 9999987643
No 190
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.14 E-value=2e-05 Score=70.55 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (288)
..+.+++.+...+++.++|.-+|.|..+..+.+..+.++|+|+|.++.+++.|++++... ..++.+++++..++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence 346677788877889999999999999999998865589999999999999999998765 468999999988753
Q ss_pred ----CCCCccceEEecccc--ccCCCccccc
Q 023034 244 ----FASSSIDAVHAGAAI--HCWSSPSTGV 268 (288)
Q Consensus 244 ----~~~~sfD~V~~~~vl--~h~~d~~~~l 268 (288)
....++|.|+....+ +++.++++-+
T Consensus 84 ~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGF 114 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLGVSSPQLDDPERGF 114 (305)
T ss_pred HHHhcCCCcccEEEEeccCCHhhcCCCCCCC
Confidence 233679999996654 4677777766
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.13 E-value=6.4e-06 Score=76.49 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.. + ..++.+..+|+..+....+.||+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~--~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-G--LENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 46899999999999999987644358999999999999999999876 2 345678999987643214579999984
No 192
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.13 E-value=1.2e-05 Score=71.53 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=59.4
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C--CCCCccceEEe
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHA 254 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~sfD~V~~ 254 (288)
+++|||+-|=||.++..++..|. .+|+.||.|..+++.|++++..+ |....++.++++|+.+. . -..++||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 78999999999999999888775 58999999999999999999987 45557899999998642 1 12468999998
No 193
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.9e-05 Score=66.60 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=77.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
.++.++..+|...||.+|||-|.|+|.++.++++. +|.++++..|+.+...+.|++-++.. | ...++++..-|+...
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-g-i~~~vt~~hrDVc~~ 169 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-G-IGDNVTVTHRDVCGS 169 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-C-CCcceEEEEeecccC
Confidence 34678889999999999999999999999999988 67789999999999999999999887 2 578999999999876
Q ss_pred CCC--CCccceEEec
Q 023034 243 PFA--SSSIDAVHAG 255 (288)
Q Consensus 243 p~~--~~sfD~V~~~ 255 (288)
.|. +..+|+|+..
T Consensus 170 GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 170 GFLIKSLKADAVFLD 184 (314)
T ss_pred CccccccccceEEEc
Confidence 554 5678988873
No 194
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.08 E-value=1.2e-05 Score=70.27 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (288)
.+.+...+......+|||||+++|+-+.+++... +.++++.+|.++...+.|+++++.. | ...+++++.+|+.+. +
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g-~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-G-VAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-C-CCCceEEEeccHHHHHH
Confidence 3444444444557799999999999999998763 4579999999999999999999987 3 247899999998653 2
Q ss_pred -C-----CCCccceEEecc
Q 023034 244 -F-----ASSSIDAVHAGA 256 (288)
Q Consensus 244 -~-----~~~sfD~V~~~~ 256 (288)
+ ..++||+|+.-.
T Consensus 146 ~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHhccccCCcccEEEecC
Confidence 1 136899999854
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.07 E-value=1.7e-05 Score=76.44 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEe
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 254 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~ 254 (288)
.+..+||||||.|.++..+++..|+..++|+|+....+..+.+++... + ..|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~-~--l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ-N--ITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc-C--CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 467899999999999999999999999999999999998888887665 2 56888888887533 267889999998
Q ss_pred ccc
Q 023034 255 GAA 257 (288)
Q Consensus 255 ~~v 257 (288)
++-
T Consensus 424 ~FP 426 (506)
T PRK01544 424 LFP 426 (506)
T ss_pred ECC
Confidence 543
No 196
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.05 E-value=2.7e-05 Score=65.54 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=66.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--C
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p 243 (288)
.+.|.+++... +.+|||||+|||....++++..|..+-.-.|+++..+...+..+... +...... -+..|+..- +
T Consensus 15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-~~~Nv~~-P~~lDv~~~~w~ 91 (204)
T PF06080_consen 15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-GLPNVRP-PLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc-CCcccCC-CeEeecCCCCCc
Confidence 35666776542 33699999999999999999999888888999998876666655554 2111111 223455433 2
Q ss_pred C------CCCccceEEeccccccCCC
Q 023034 244 F------ASSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 244 ~------~~~sfD~V~~~~vl~h~~d 263 (288)
. ..++||+|++.+++|-++.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~ 117 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPW 117 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCH
Confidence 2 3468999999999997764
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.04 E-value=1.2e-05 Score=67.77 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCeEEEEcCccch----HHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHh------------------cCCCC-
Q 023034 177 LGGNIIDASCGSGL----FSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQ------------------ESNFP- 228 (288)
Q Consensus 177 ~~~~VLDiGcG~G~----~~~~l~~~-----~~~~~v~gvD~s~~~l~~A~~~~~~------------------~~g~~- 228 (288)
..-+|+-+||++|. ++..+.+. ....+++|+|+|+.+++.|++-.-. ..|..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46789999999994 34444441 2246999999999999999863200 00100
Q ss_pred ------CCCEEEEEecCCCCCCCCCccceEEeccccccCCCccc
Q 023034 229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST 266 (288)
Q Consensus 229 ------~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~ 266 (288)
-..+.|.+.|+.+.+...+.||+|+|.+||-++....+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~ 154 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQ 154 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHH
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHH
Confidence 14688999999884445689999999999999976533
No 198
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.02 E-value=2.8e-05 Score=62.06 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCccchHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc
Q 023034 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD 250 (288)
.+...|+|+|||.|+++..++. . ++.+|+|+|.++..++.+.++.+..+.....+..+..++....+. ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5678999999999999999998 4 557999999999999999998876511112455566655543321 44566
Q ss_pred eEEeccc
Q 023034 251 AVHAGAA 257 (288)
Q Consensus 251 ~V~~~~v 257 (288)
+++..++
T Consensus 102 ~~vgLHa 108 (141)
T PF13679_consen 102 ILVGLHA 108 (141)
T ss_pred EEEEeec
Confidence 6666543
No 199
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=3.7e-05 Score=70.39 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=71.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------C-------EEEE
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------LVVA 206 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~g 206 (288)
...++..-+-.++..++|--||+|.++...+..+.+ + .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 444555445555678999999999999988877641 1 3779
Q ss_pred EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 207 vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
+|+++.|++.|+.++...| ..+.|.|.++|+..++-+-+.+|+|+++-
T Consensus 260 ~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 260 SDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred ecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 9999999999999999873 46779999999998875447899999964
No 200
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.98 E-value=1.2e-05 Score=67.17 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=62.8
Q ss_pred HHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-C
Q 023034 166 FELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L 242 (288)
Q Consensus 166 ~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-l 242 (288)
.+.+..++.. -++.++||+-||+|.++.++..+|. .+|+.+|.++..++..+++++..+ ...++.++..|+.. +
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHH
Confidence 3445555543 3689999999999999999999986 599999999999999999998762 12358888888543 2
Q ss_pred C---CCCCccceEEec
Q 023034 243 P---FASSSIDAVHAG 255 (288)
Q Consensus 243 p---~~~~sfD~V~~~ 255 (288)
+ -....||+|++.
T Consensus 106 ~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLD 121 (183)
T ss_dssp HHHHHCTS-EEEEEE-
T ss_pred HhhcccCCCceEEEEC
Confidence 1 246789999984
No 201
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=6.1e-05 Score=68.40 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (288)
|..++.+.... |.+|||.=+|-|.++..+++.+.. .|+++|+++..++..+++++.++ ....+..+++|+.+...
T Consensus 178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh
Confidence 34555555554 899999999999999999999872 49999999999999999999872 33448899999998876
Q ss_pred CCCccceEEeccccc---cCCCccccc---ceEEEEecCcccH
Q 023034 245 ASSSIDAVHAGAAIH---CWSSPSTGV---GVFFQVTLIIHVV 281 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~---h~~d~~~~l---G~lvi~t~~~~~l 281 (288)
..+.||-|+++..-. .++.....+ |.+.+-.+.++..
T Consensus 253 ~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 253 ELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 668999999987642 222222222 8888887776655
No 202
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.95 E-value=3.8e-05 Score=61.03 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=49.2
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
++||||||.|.++..+++.++..+++++|+++.+.+.++++++..+ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999999886789999999999999999987751 2457777666553
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.94 E-value=8.2e-05 Score=66.13 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=68.2
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC-CCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFA 245 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~-~lp~~ 245 (288)
.+...+......+|||+|+|.|..+..+.+..+ ..+++.+|.|+.|++.++..+.... ......+...... ..++
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~- 100 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYRDFLPF- 100 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhcccccC-
Confidence 333334444567999999999987776666532 3589999999999999998766541 1111111111111 1222
Q ss_pred CCccceEEeccccccCCCccccc-----------ceEEEEecCc
Q 023034 246 SSSIDAVHAGAAIHCWSSPSTGV-----------GVFFQVTLII 278 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~~l-----------G~lvi~t~~~ 278 (288)
...|+|++.++|..+++ ..-. +.|++..++.
T Consensus 101 -~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt 142 (274)
T PF09243_consen 101 -PPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGT 142 (274)
T ss_pred -CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCC
Confidence 23399999999999988 3222 8788877754
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.93 E-value=0.00011 Score=61.28 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=60.9
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl 258 (288)
+++|||+|.|.-+..++-..|..+++.+|....-+...+......+ ..++.++.+.+++ +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehhc
Confidence 8999999999999999888888899999999988877777766652 5689999999998 5557899999997764
No 205
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=8e-06 Score=71.40 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
......++..... +..+||+|||.|..+..- |...++|.|++...+..+++. .......+|+..+
T Consensus 33 Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~----p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~ 97 (293)
T KOG1331|consen 33 WPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVN----PLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKL 97 (293)
T ss_pred cHHHHHHHhccCC--cceeeecccCCcccCcCC----CcceeeecchhhhhccccccC---------CCceeehhhhhcC
Confidence 3333444444443 889999999999544321 456899999999999988863 1226789999999
Q ss_pred CCCCCccceEEeccccccCCCccc
Q 023034 243 PFASSSIDAVHAGAAIHCWSSPST 266 (288)
Q Consensus 243 p~~~~sfD~V~~~~vl~h~~d~~~ 266 (288)
|+.+.+||.+++..++||+....+
T Consensus 98 p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 98 PFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred CCCCCccccchhhhhhhhhhhHHH
Confidence 999999999999999999976544
No 206
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=6.2e-05 Score=64.37 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=42.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~ 223 (288)
.+..+|||||..|.++..+++.+....|+|+||++..++.|++.++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 46789999999999999999987667899999999999999998753
No 207
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.87 E-value=3.3e-05 Score=70.98 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++..++|+|||.|....+++.... ..++|+|.++..+..+....... + ....-.++.+|+...||+++.||.+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~-~-l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKA-Y-LDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHH-H-hhhhcceehhhhhcCCCCccccCcEEEE
Confidence 4577899999999999999988754 58999999999988888776554 1 1233445889999999999999999999
Q ss_pred cccccCCCccccc
Q 023034 256 AAIHCWSSPSTGV 268 (288)
Q Consensus 256 ~vl~h~~d~~~~l 268 (288)
.+.+|.+++..++
T Consensus 186 d~~~~~~~~~~~y 198 (364)
T KOG1269|consen 186 EVVCHAPDLEKVY 198 (364)
T ss_pred eecccCCcHHHHH
Confidence 9999999998888
No 208
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.87 E-value=2.9e-05 Score=65.29 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=62.2
Q ss_pred hhhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q 023034 144 FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (288)
Q Consensus 144 ~~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~ 222 (288)
..|+.++++... .||... ++.+++++...+ ...|-|+|||.+.++..+... . .|...|+-.
T Consensus 42 ~~YH~Gfr~Qv~--~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva----------- 103 (219)
T PF05148_consen 42 DIYHEGFRQQVK--KWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHC--TSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHh--cCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-----------
Confidence 456677776542 343332 466677766444 568999999999999776532 2 799999854
Q ss_pred hcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccccC------CCccccc---ceEEEEecC
Q 023034 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW------SSPSTGV---GVFFQVTLI 277 (288)
Q Consensus 223 ~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~------~d~~~~l---G~lvi~t~~ 277 (288)
.+-.+..+|+..+|+++++.|+++....|.-. .+..++| |.|.|+...
T Consensus 104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp -------SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------CCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 12236789999999999999999998877643 2333444 888887754
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00015 Score=60.26 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=71.5
Q ss_pred HHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 164 KEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 164 ~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
+..+.+..++.. -.+.++||+-+|+|.++.+...+|. ..++.+|.+...+...+++++..+ ...+..++..|+..
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~ 104 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALR 104 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHH
Confidence 334566667764 5789999999999999999999987 699999999999999999988761 23678888888874
Q ss_pred C-CCCC--CccceEEecccc
Q 023034 242 L-PFAS--SSIDAVHAGAAI 258 (288)
Q Consensus 242 l-p~~~--~sfD~V~~~~vl 258 (288)
. +-.. +.||+|+.-=-+
T Consensus 105 ~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred HHHhcCCCCcccEEEeCCCC
Confidence 3 1122 249999985433
No 210
>PLN02823 spermine synthase
Probab=97.83 E-value=5.4e-05 Score=69.03 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCC-CCCCCCccceEEe
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA 254 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~ 254 (288)
...+||.||+|.|..++++.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|+.. +....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3568999999999999999886544689999999999999999876431 1125789999999875 3444578999998
Q ss_pred c
Q 023034 255 G 255 (288)
Q Consensus 255 ~ 255 (288)
.
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 6
No 211
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=2.4e-05 Score=73.43 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=63.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 165 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
.+..+.+++....+..+||+-||||.++..+++... +|+|+|+++..++.|+++++.++ ..|.+|+++-++++
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhhc
Confidence 356667777877889999999999999999998876 99999999999999999988873 68999999966653
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.82 E-value=0.00033 Score=61.78 Aligned_cols=88 Identities=9% Similarity=0.031 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccc
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSID 250 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD 250 (288)
...-+||||.||.|+....+.+..+. ..|.-.|+|+..++..++.++..+ ...-+.|.++|+.+.. --+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCCC
Confidence 45678999999999988887777654 689999999999999999998872 2333499999987631 1234579
Q ss_pred eEEeccccccCCCcc
Q 023034 251 AVHAGAAIHCWSSPS 265 (288)
Q Consensus 251 ~V~~~~vl~h~~d~~ 265 (288)
+++.+..++.++|-+
T Consensus 212 l~iVsGL~ElF~Dn~ 226 (311)
T PF12147_consen 212 LAIVSGLYELFPDND 226 (311)
T ss_pred EEEEecchhhCCcHH
Confidence 999999999999854
No 213
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.81 E-value=5.1e-05 Score=64.43 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=56.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCCCCCEEEEEecCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS 240 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~------~g~~~~~i~~~~~d~~ 240 (288)
..+.+.++..+++..+|||||.|.....++-.....+++|||+.+...+.|++..... -|....++.+..+|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4455667778899999999999998777765544357999999999888877544321 0233467888889887
Q ss_pred CCCCCC---CccceEEecccc
Q 023034 241 RLPFAS---SSIDAVHAGAAI 258 (288)
Q Consensus 241 ~lp~~~---~sfD~V~~~~vl 258 (288)
+.++.. ...|+|++++..
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT
T ss_pred ccHhHhhhhcCCCEEEEeccc
Confidence 654221 347999998764
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.80 E-value=0.00016 Score=72.42 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=67.0
Q ss_pred HHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCC------------------------------------------CC
Q 023034 166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGL------------------------------------------FS 202 (288)
Q Consensus 166 ~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~~~------------------------------------------~~ 202 (288)
...++...+- .++..++|.+||+|.++.+.+.... ..
T Consensus 178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~ 257 (702)
T PRK11783 178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPS 257 (702)
T ss_pred HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence 3444443332 3578999999999999988765310 12
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC--CCccceEEecc
Q 023034 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGA 256 (288)
Q Consensus 203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~sfD~V~~~~ 256 (288)
+++|+|+++.+++.|++++... | ....+.+.++|+.+++.+ .++||+|+++-
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~-g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRA-G-VAELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHc-C-CCcceEEEeCChhhcccccccCCCCEEEECC
Confidence 6999999999999999999987 2 235689999999987654 35799999973
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.78 E-value=7.4e-05 Score=72.48 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=66.4
Q ss_pred CCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Q 023034 158 GFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ 222 (288)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~l~~A~~~~~ 222 (288)
.|++|....+.+.+.+... ...+|||.|||+|.++..+.+... ...++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 4677777777777655321 345899999999999988877542 2578999999999999999887
Q ss_pred hcCCCCCCCEEEEEecCCCC-----CCCCCccceEEecc
Q 023034 223 QESNFPKENFLLVRADISRL-----PFASSSIDAVHAGA 256 (288)
Q Consensus 223 ~~~g~~~~~i~~~~~d~~~l-----p~~~~sfD~V~~~~ 256 (288)
..+ ...+.+...|.... .-..+.||+|+++=
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence 651 12344455553321 11125799999963
No 216
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=5.5e-05 Score=62.73 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=71.2
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCc
Q 023034 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (288)
Q Consensus 169 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~s 248 (288)
+..+-..-.+++|||+|.|+|..+...++.|. ..|+..|+.+...+..+-+.+.+ ...+.+...|... .+..
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~ 142 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPA 142 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcc
Confidence 33333334689999999999999999999886 58999999998888888877776 4778888887765 4678
Q ss_pred cceEEeccccccCCCccccc
Q 023034 249 IDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l 268 (288)
||+|++..++..-+...+.+
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~ 162 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLI 162 (218)
T ss_pred eeEEEeeceecCchHHHHHH
Confidence 99999999876544444444
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00012 Score=65.04 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=65.4
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-CCCEEEEEecCCCC-CCCCCccceEEecc
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL-PFASSSIDAVHAGA 256 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-~~~i~~~~~d~~~l-p~~~~sfD~V~~~~ 256 (288)
.+||-||-|.|..++++.+..+..+++.+|+++..++.+++.+....+.. .+++.++.+|+.+. .-...+||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999877899999999999999999987663222 48899999998754 22234899999854
Q ss_pred c
Q 023034 257 A 257 (288)
Q Consensus 257 v 257 (288)
.
T Consensus 158 t 158 (282)
T COG0421 158 T 158 (282)
T ss_pred C
Confidence 4
No 218
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.75 E-value=0.00011 Score=63.53 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (288)
++.+...+. +..+|+|||||.-.++..+....+...++|+|++..+++.....+... .........|+..-+ +
T Consensus 96 Y~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 96 YDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-T
T ss_pred HHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-C
Confidence 344444333 378999999999999988887776779999999999999999988776 467778888887654 3
Q ss_pred CCccceEEeccccccCCCccc
Q 023034 246 SSSIDAVHAGAAIHCWSSPST 266 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~~~ 266 (288)
....|+.+..-+++.+....+
T Consensus 169 ~~~~DlaLllK~lp~le~q~~ 189 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRR 189 (251)
T ss_dssp TSEESEEEEET-HHHHHHHST
T ss_pred CCCcchhhHHHHHHHHHHHhc
Confidence 567999999998888765444
No 219
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.73 E-value=2.8e-05 Score=65.51 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=68.6
Q ss_pred CcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecC
Q 023034 161 GPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (288)
Q Consensus 161 ~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~ 239 (288)
.|+.+.+.+....... ....|+|.-||-|.....++.+++ .|+++|+++.-+..|+.+++-. |++. +++|++||+
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI~~-rItFI~GD~ 152 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GVPD-RITFICGDF 152 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cCCc-eeEEEechH
Confidence 4555545554433211 466899999999999999999998 9999999999999999999988 5555 999999998
Q ss_pred CCC----CCCCCccceEEec
Q 023034 240 SRL----PFASSSIDAVHAG 255 (288)
Q Consensus 240 ~~l----p~~~~sfD~V~~~ 255 (288)
.++ .+....+|+|+.+
T Consensus 153 ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 153 LDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHHHHhhhhheeeeeecC
Confidence 754 3433345566654
No 220
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.73 E-value=4.9e-05 Score=62.58 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.+.+.|+|.|+|.++...++... +|++++.++...+.|.++++..+ ..++.++.+|+....| ...|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHH
Confidence 46899999999999999988865 99999999999999999976552 6789999999999888 467898873
No 221
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.73 E-value=0.00032 Score=66.80 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccce
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDA 251 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~ 251 (288)
.+.++.+|||+++|.|.=+..+++.. ..+.+++.|+++..++..+++++..+ ..++.+...|...+. ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence 56789999999999999888888764 34689999999999999999999883 467888888887653 23467999
Q ss_pred EEe
Q 023034 252 VHA 254 (288)
Q Consensus 252 V~~ 254 (288)
|+.
T Consensus 187 ILv 189 (470)
T PRK11933 187 ILL 189 (470)
T ss_pred EEE
Confidence 995
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00031 Score=59.15 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--------CCC
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 246 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~ 246 (288)
.++..|+|+|+..|.|++.+++.. ....|+|+|+.+ ..+..++.++++|+..-+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p--------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP--------------MKPIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc--------------cccCCCceEEeeeccCccHHHHHHHHcCC
Confidence 458999999999999999999884 445699999987 223567999999998643 344
Q ss_pred CccceEEecccc----ccCCCcccc--------------c---ceEEEEecCcccHHHHHh
Q 023034 247 SSIDAVHAGAAI----HCWSSPSTG--------------V---GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 247 ~sfD~V~~~~vl----~h~~d~~~~--------------l---G~lvi~t~~~~~l~el~~ 286 (288)
..+|+|++-..- ++.-|.... | |.|++..|..+...++..
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~ 170 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK 170 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH
Confidence 557999974432 111111111 1 999999998877776654
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00029 Score=60.03 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=62.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccc
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~v 257 (288)
+.+++|||+|.|.=+..++-..++.+++-+|....-+...++..... ...++.++++.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 58999999999999999887778889999999998777777665555 256799999999988632222999999664
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.67 E-value=0.00092 Score=60.56 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=68.9
Q ss_pred CCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHH-hcCCCCCCCEEEEEecCCC----CCC--C
Q 023034 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLLVRADISR----LPF--A 245 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~-~~~g~~~~~i~~~~~d~~~----lp~--~ 245 (288)
++..|+|+|||+|.=...|.+. +....++++|+|..+++.+.+++. .. .+...+.-+++|..+ ++- .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~--~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN--FSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--CCCeEEEEEEecHHHHHhhcccccc
Confidence 4678999999999865554443 334589999999999999999988 33 122334448888754 221 1
Q ss_pred CCccceEEe-ccccccCCCcc---------c-cc---ceEEEEecCcccHHHHHhh
Q 023034 246 SSSIDAVHA-GAAIHCWSSPS---------T-GV---GVFFQVTLIIHVVEDLAVS 287 (288)
Q Consensus 246 ~~sfD~V~~-~~vl~h~~d~~---------~-~l---G~lvi~t~~~~~l~el~~~ 287 (288)
.....+++. ..+|.+++..+ + .+ |.|+++.=.......|..+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~A 209 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRA 209 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHH
Confidence 233455555 45888876543 1 23 6666665444444444443
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.62 E-value=0.00036 Score=63.13 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++.++|||||++|.++..+.++|. +|++||..+ |..... . ..++....+|......+.+.+|.++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~----~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM----D-----TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh----C-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5689999999999999999999987 999999655 322222 1 578999999887654336789999996
Q ss_pred cc
Q 023034 256 AA 257 (288)
Q Consensus 256 ~v 257 (288)
.+
T Consensus 278 mv 279 (357)
T PRK11760 278 MV 279 (357)
T ss_pred cc
Confidence 65
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.61 E-value=0.00063 Score=52.85 Aligned_cols=94 Identities=26% Similarity=0.374 Sum_probs=62.7
Q ss_pred EEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCC-EEEEEecCCC--CCCCC-CccceEEec
Q 023034 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG 255 (288)
Q Consensus 181 VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~-i~~~~~d~~~--lp~~~-~sfD~V~~~ 255 (288)
++|+|||+|... .+...... ..++|+|+++.++..++...... ... +.+..+|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999966 33333221 37999999999999865543221 112 6788888876 78877 589999 55
Q ss_pred cccccCCCccccc----------ceEEEEecCccc
Q 023034 256 AAIHCWSSPSTGV----------GVFFQVTLIIHV 280 (288)
Q Consensus 256 ~vl~h~~d~~~~l----------G~lvi~t~~~~~ 280 (288)
....+..++...+ |.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444433333333 778887776544
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.54 E-value=0.0003 Score=59.77 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCCCCccceEEecc
Q 023034 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGA 256 (288)
Q Consensus 181 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~~ 256 (288)
|.||||-.|++..+|.+.+...+++++|+++.-++.|++++... ....++.+..+|... ++. ....|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEEec
Confidence 68999999999999999987678999999999999999999987 245789999999654 432 22367777654
No 228
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.53 E-value=6e-05 Score=64.16 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=66.3
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCC
Q 023034 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS 247 (288)
Q Consensus 170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~ 247 (288)
....+...|.+|||...|-|+.+....++|. .+|+.+|-+++.++.|.-+-=.. +.....+.++.+|+.++ .|+|.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence 4455666799999999999999999999986 69999999999999987642111 12234678999998765 58899
Q ss_pred ccceEEe
Q 023034 248 SIDAVHA 254 (288)
Q Consensus 248 sfD~V~~ 254 (288)
+||+|+.
T Consensus 205 sfDaIiH 211 (287)
T COG2521 205 SFDAIIH 211 (287)
T ss_pred ccceEee
Confidence 9999986
No 229
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.50 E-value=0.00012 Score=65.65 Aligned_cols=99 Identities=17% Similarity=0.308 Sum_probs=72.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (288)
.+.+++.+.+.+++.+||.--|.|..+..+.+..++++++|+|.++.+++.|++++... ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence 35667777788899999999999999999999877789999999999999999987765 578999999988753
Q ss_pred ---C-CCCccceEEecc--ccccCCCccccc
Q 023034 244 ---F-ASSSIDAVHAGA--AIHCWSSPSTGV 268 (288)
Q Consensus 244 ---~-~~~sfD~V~~~~--vl~h~~d~~~~l 268 (288)
. ....+|.|+.-. ..+++.++++-+
T Consensus 85 l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGF 115 (310)
T PF01795_consen 85 LKELNGINKVDGILFDLGVSSMQLDDPERGF 115 (310)
T ss_dssp HHHTTTTS-EEEEEEE-S--HHHHHTGGGSS
T ss_pred HHHccCCCccCEEEEccccCHHHhCCCCCCC
Confidence 2 346899999854 445677776655
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.50 E-value=0.00068 Score=59.81 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHh-----c--------------CCC--
Q 023034 178 GGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ-----E--------------SNF-- 227 (288)
Q Consensus 178 ~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~l~~A~~~~~~-----~--------------~g~-- 227 (288)
.-+|+-+||+||. ++..+.+.++ ..+|+|+|+|..+++.|+.-.-. . ++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6789999999994 4445555542 47999999999999999853211 0 000
Q ss_pred -----CCCCEEEEEecCCCCCCCCCccceEEeccccccCCCcccc
Q 023034 228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG 267 (288)
Q Consensus 228 -----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~ 267 (288)
.-..|.|.+.|+..-++..+.||+|+|.+||-++..+.+.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~ 221 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQE 221 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHH
Confidence 0134677778877665456789999999999999776443
No 231
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.49 E-value=0.00011 Score=61.07 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC------C--CC--
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P--FA-- 245 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l------p--~~-- 245 (288)
.+.+|||+||++|.|+..+.+++ +..+|+|+|+.+. . +..++..+++|+.+. . +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------D----PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------c----cccceeeeecccchhhHHHhhhhhcccc
Confidence 46899999999999999999997 4469999999874 0 124555556665321 1 11
Q ss_pred CCccceEEeccccccCCCc----cccc-----------------ceEEEEecCcccHHHHH
Q 023034 246 SSSIDAVHAGAAIHCWSSP----STGV-----------------GVFFQVTLIIHVVEDLA 285 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h~~d~----~~~l-----------------G~lvi~t~~~~~l~el~ 285 (288)
.+.||+|++-.+.....++ ...+ |.+++..+......++.
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~ 149 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELI 149 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHH
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHH
Confidence 2689999997744332221 1000 77999888764444444
No 232
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00091 Score=62.83 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=72.2
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEeccccc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~ 259 (288)
++|.+|||.-.+...+.+.|. ..|+-+|+|+-.++....+.... .....+...|...+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 899999999999999998876 58999999999998888775433 5778999999999999999999999999999
Q ss_pred cCCCccccc
Q 023034 260 CWSSPSTGV 268 (288)
Q Consensus 260 h~~d~~~~l 268 (288)
++-.++..+
T Consensus 126 al~~de~a~ 134 (482)
T KOG2352|consen 126 ALFEDEDAL 134 (482)
T ss_pred cccCCchhh
Confidence 875544433
No 233
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.48 E-value=5.1e-05 Score=52.69 Aligned_cols=47 Identities=30% Similarity=0.565 Sum_probs=31.7
Q ss_pred ccCCceeCCCCCCCCcccCC-------------------CCCccccccCCceecCCCCcccccCCC
Q 023034 67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~-------------------~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
..+++++||.|+++|.+... ...-...+..+.+.|++|++.|++.+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 45789999999998811000 000012367899999999999999876
No 234
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.39 E-value=0.00097 Score=57.74 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=78.1
Q ss_pred CcCcCCchhhhhhcCcchhh-hhHHHHhhhhhcCCCCCcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCC
Q 023034 125 DYGELMSPATEFFRMPFMSF-IYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFS 202 (288)
Q Consensus 125 ~y~~~~~~~~~~~~~~~~s~-~~~~~wr~~~~~~g~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~ 202 (288)
-|......+..+|....-.+ .|+.+++.... .|+. .-++.+++++... ....|-|+|||.+.++. ....
T Consensus 130 LYt~~s~~A~~lfkedp~afdlYH~gfr~QV~--kWP~--nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~-- 200 (325)
T KOG3045|consen 130 LYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVK--KWPE--NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH-- 200 (325)
T ss_pred hccCCcHHHHHHHhcCcHHHHHHHHHHHHHHH--hCCC--ChHHHHHHHHHhCcCceEEEecccchhhhhh---cccc--
Confidence 34444444444554443332 46666665432 2222 2235555655433 35679999999998766 2222
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccccc------CCCccccc---ceEEE
Q 023034 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC------WSSPSTGV---GVFFQ 273 (288)
Q Consensus 203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h------~~d~~~~l---G~lvi 273 (288)
.|+..|+-. .+-+++.+|+.++|+++++.|+++....|.- +.+..++| |.+.|
T Consensus 201 kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 201 KVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred ceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence 799999844 3455788999999999999999998777652 22233444 77777
Q ss_pred EecC
Q 023034 274 VTLI 277 (288)
Q Consensus 274 ~t~~ 277 (288)
+...
T Consensus 263 AEv~ 266 (325)
T KOG3045|consen 263 AEVK 266 (325)
T ss_pred Eehh
Confidence 7653
No 235
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.32 E-value=0.00085 Score=58.67 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=60.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCC-CCCCC-ccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~-sfD~V~ 253 (288)
...+||-||-|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|+... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4789999999999999999887655699999999999999999876531 11257899999998642 22233 899999
Q ss_pred eccc
Q 023034 254 AGAA 257 (288)
Q Consensus 254 ~~~v 257 (288)
.-..
T Consensus 156 ~D~~ 159 (246)
T PF01564_consen 156 VDLT 159 (246)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8443
No 236
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.27 E-value=0.0008 Score=60.75 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=68.6
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecccc
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~vl 258 (288)
...+|+|.|.|..+..+...++ +|-|++++...+..++..+. +++..+-+|...- .| +-|+|++-++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence 6799999999999999999877 89999999998888887643 3477777886543 22 34699999999
Q ss_pred ccCCCccccc------------ceEEEEecC
Q 023034 259 HCWSSPSTGV------------GVFFQVTLI 277 (288)
Q Consensus 259 ~h~~d~~~~l------------G~lvi~t~~ 277 (288)
|||.|.+-+- |.+++....
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 9998864332 888887763
No 237
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0024 Score=54.12 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=68.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA- 245 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~- 245 (288)
+.+.+++.. +.++.||||-.|++..++.+.++...+++.|++++-++.|.+++... .....++...+|... ++.
T Consensus 8 ~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 8 TTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCcc-ccCc
Confidence 445556654 55699999999999999999998889999999999999999999886 346788888888843 333
Q ss_pred CCccceEEecc
Q 023034 246 SSSIDAVHAGA 256 (288)
Q Consensus 246 ~~sfD~V~~~~ 256 (288)
+..+|+|+..+
T Consensus 83 ~d~~d~ivIAG 93 (226)
T COG2384 83 EDEIDVIVIAG 93 (226)
T ss_pred cCCcCEEEEeC
Confidence 34788888754
No 238
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.19 E-value=0.00063 Score=57.62 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC---CCccceEEec
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~sfD~V~~~ 255 (288)
.++|||||=+..+...- .+. -.|+.||+++ ..-.+.+.|+.+.|.+ +++||+|.++
T Consensus 53 lrlLEVGals~~N~~s~--~~~-fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGW-FDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccc--cCc-eeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence 68999999865433322 222 3799999976 1233578899887763 6789999999
Q ss_pred cccccCCCccccc-------------ce-----EEEEecCc
Q 023034 256 AAIHCWSSPSTGV-------------GV-----FFQVTLII 278 (288)
Q Consensus 256 ~vl~h~~d~~~~l-------------G~-----lvi~t~~~ 278 (288)
.||.++|+|..-- |. +++.++.+
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 9999999986533 77 88877654
No 239
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.13 E-value=0.0033 Score=53.63 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=69.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 164 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
.+..++...++...++++||||.=||+-+..++...| .++|+++|+++...+.+.+..+..+ ....++++++++.+.
T Consensus 60 d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 60 DKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhh
Confidence 3344444444545578999999999998888887754 5799999999999999988888762 467899999998642
Q ss_pred ------CCCCCccceEEe
Q 023034 243 ------PFASSSIDAVHA 254 (288)
Q Consensus 243 ------p~~~~sfD~V~~ 254 (288)
..+.++||+++.
T Consensus 138 Ld~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFV 155 (237)
T ss_pred HHHHHhcCCCCceeEEEE
Confidence 235689999997
No 240
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.10 E-value=0.0015 Score=60.47 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-CCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~sfD~V~~~ 255 (288)
+.+|||+.||+|..+..++.+.. -..|+++|+++..++.++++++..+ ..++.++++|+..+-. ....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 46899999999999999988731 2589999999999999999998762 3468889999875521 23579999884
Q ss_pred c
Q 023034 256 A 256 (288)
Q Consensus 256 ~ 256 (288)
-
T Consensus 122 P 122 (374)
T TIGR00308 122 P 122 (374)
T ss_pred C
Confidence 3
No 241
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.07 E-value=0.0043 Score=54.48 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHhhcCCC-CCCeEEEEcCc--c-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023034 168 LMKGYLKPV-LGGNIIDASCG--S-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (288)
Q Consensus 168 ~l~~~l~~~-~~~~VLDiGcG--~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (288)
+..+++... .=...|||||| | |..-....+..|.++|+.+|+++-.+..++..+.... .....++++|+.+..
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPE 134 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HH
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHH
Confidence 344454433 23569999999 3 4444444444788899999999999999999877651 123889999997632
Q ss_pred -----------CCCCccceEEeccccccCCCcc
Q 023034 244 -----------FASSSIDAVHAGAAIHCWSSPS 265 (288)
Q Consensus 244 -----------~~~~sfD~V~~~~vl~h~~d~~ 265 (288)
+.-..-=.|+...+|||++|.+
T Consensus 135 ~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~ 167 (267)
T PF04672_consen 135 AILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDD 167 (267)
T ss_dssp HHHCSHHHHCC--TTS--EEEECT-GGGS-CGC
T ss_pred HHhcCHHHHhcCCCCCCeeeeeeeeeccCCCcc
Confidence 1112233788899999998743
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0056 Score=54.39 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=79.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (288)
....++.|.+.+++..||.--|.|..+..+.+.++ .++++|+|.++.+++.|++++... ..++.++++.+.++.
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAE 87 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHH
Confidence 45667788888899999999999999999999875 357999999999999999998886 578999999887653
Q ss_pred ----CCCCccceEEeccccc--cCCCccccc
Q 023034 244 ----FASSSIDAVHAGAAIH--CWSSPSTGV 268 (288)
Q Consensus 244 ----~~~~sfD~V~~~~vl~--h~~d~~~~l 268 (288)
...+.+|.|+.-..+. ++.++++-+
T Consensus 88 ~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGF 118 (314)
T COG0275 88 ALKELGIGKVDGILLDLGVSSPQLDDAERGF 118 (314)
T ss_pred HHHhcCCCceeEEEEeccCCccccCCCcCCc
Confidence 2346889999865443 455555544
No 243
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.05 E-value=0.003 Score=56.46 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=46.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-----CCCCCCccceE
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDAV 252 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~sfD~V 252 (288)
..++||||+|....-..|..+..+++++|+|+++..++.|+++++.. .....+|.++...-.. +-..+..||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-PNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45799999998754333322212359999999999999999999875 1346778887654221 22234689999
Q ss_pred Eecccccc
Q 023034 253 HAGAAIHC 260 (288)
Q Consensus 253 ~~~~vl~h 260 (288)
.|+=-++.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99766554
No 244
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.012 Score=54.36 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=66.7
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (288)
.....+.+.+|.+|||+.++.|.=+..+++...+ ..|+++|.++.-++..+++++..| ..++..+..|...++
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAEL 223 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEeccccccccc
Confidence 3345678889999999999999988888877543 457999999999999999999983 556788888877554
Q ss_pred -CCCCccceEEe
Q 023034 244 -FASSSIDAVHA 254 (288)
Q Consensus 244 -~~~~sfD~V~~ 254 (288)
...+.||.|+.
T Consensus 224 ~~~~~~fD~iLl 235 (355)
T COG0144 224 LPGGEKFDRILL 235 (355)
T ss_pred ccccCcCcEEEE
Confidence 22235999997
No 245
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.02 E-value=0.00014 Score=60.83 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
.+.++||+|+|.|..+..++.... +|++.|.|..|....+++ .-++- -.-+..+ .+-+||+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynVl-~~~ew~~---t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNVL-TEIEWLQ---TDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCcee-eehhhhh---cCceeehHHHHH
Confidence 357899999999999999988765 899999999998888765 12221 1111222 234699999999
Q ss_pred ccccCCCccccc-----------ceEEEEecC
Q 023034 257 AIHCWSSPSTGV-----------GVFFQVTLI 277 (288)
Q Consensus 257 vl~h~~d~~~~l-----------G~lvi~t~~ 277 (288)
+|.--.+|-+.| |+++++...
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 998777777766 887776643
No 246
>PRK00536 speE spermidine synthase; Provisional
Probab=96.98 E-value=0.0036 Score=55.11 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
+..++||=||.|.|..++++.+... +|+-+|+++.+++.+++.+.... +...++++++.. +.+ -..++||+|+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 3468999999999999999998753 99999999999999999765431 234577777752 221 12368999998
Q ss_pred cc
Q 023034 255 GA 256 (288)
Q Consensus 255 ~~ 256 (288)
-.
T Consensus 146 Ds 147 (262)
T PRK00536 146 LQ 147 (262)
T ss_pred cC
Confidence 63
No 247
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.004 Score=51.50 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cCCCC--------CCC
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA 245 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~~~l--------p~~ 245 (288)
.++.+|||+||..|.++....++ +|++-|.|+|+-.- .+..++.++.+ |+.+. .++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhCC
Confidence 45999999999999999999888 58899999998441 12455666666 55442 135
Q ss_pred CCccceEEecccccc----CCCccccc-----------------ceEEEEecCcccHHHHHh
Q 023034 246 SSSIDAVHAGAAIHC----WSSPSTGV-----------------GVFFQVTLIIHVVEDLAV 286 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h----~~d~~~~l-----------------G~lvi~t~~~~~l~el~~ 286 (288)
+...|+|++...-.- +.|-.+.+ |.|+.-.+..+...+|.+
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r 195 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQR 195 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHH
Confidence 677898888543211 01111100 999999998877776654
No 248
>PRK10742 putative methyltransferase; Provisional
Probab=96.90 E-value=0.0053 Score=53.35 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHhhcCCCCCC--eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CC-CCCCEEEEEec
Q 023034 167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD 238 (288)
Q Consensus 167 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~-----g~-~~~~i~~~~~d 238 (288)
+.+.+.++.+++. +|||.-+|.|..+..++.+|. +|+++|-++.+....++.++... +. ...++.++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666666666 899999999999999999987 79999999999988888877620 00 01468888888
Q ss_pred CCCC-CCCCCccceEEecccccc
Q 023034 239 ISRL-PFASSSIDAVHAGAAIHC 260 (288)
Q Consensus 239 ~~~l-p~~~~sfD~V~~~~vl~h 260 (288)
..+. .-...+||+|+.-=.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7643 212347999998665555
No 249
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.79 E-value=0.0023 Score=53.52 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=51.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCCCEEEEEecCC
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADIS 240 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~----g~~~~~i~~~~~d~~ 240 (288)
...+.|||||.|.++..++..+|.-.++|+||-...-++.++++...+ +....++.+.+.++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence 457999999999999999999999999999999999999999987542 122456666666655
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0044 Score=49.27 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
.+.++....++...+.++.+|+|.|.|+.....++.+. ...+|+|+++-.+.+++-..-.. .......|.+-|+...
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHH--hcccchhhhhhhhhhc
Confidence 34467777788777778999999999999999998873 47899999999988887665444 2356788889999887
Q ss_pred CCCCCccceEEeccccccCCCccccc
Q 023034 243 PFASSSIDAVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 243 p~~~~sfD~V~~~~vl~h~~d~~~~l 268 (288)
.+.+-.+-+|+... .-++|.+.-|
T Consensus 135 dl~dy~~vviFgae--s~m~dLe~KL 158 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAE--SVMPDLEDKL 158 (199)
T ss_pred cccccceEEEeehH--HHHhhhHHHH
Confidence 77665555555433 3344444333
No 251
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.68 E-value=0.0086 Score=57.60 Aligned_cols=117 Identities=20% Similarity=0.157 Sum_probs=84.2
Q ss_pred cchhhhhHHHHhhhh---hc--CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC----CCEEEEEeCC
Q 023034 140 PFMSFIYERGWRQNF---VW--GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS 210 (288)
Q Consensus 140 ~~~s~~~~~~wr~~~---~~--~g~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s 210 (288)
..+.-.|+...++.. -. +.+++|....+.+.+.+.+.+..+|.|-.||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 455556665544432 12 45899999999999999877788999999999998877766531 2579999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-----CCCccceEEecccc
Q 023034 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----ASSSIDAVHAGAAI 258 (288)
Q Consensus 211 ~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~vl 258 (288)
+.....|+-++-.+ |... .+....+|...-|. ..+.||.|+++--+
T Consensus 224 ~~t~~l~~mN~~lh-gi~~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 224 DTTYRLAKMNLILH-GIEG-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred HHHHHHHHHHHHHh-CCCc-cccccccccccCCcccccCCccceeEEEeCCCC
Confidence 99999999998777 3322 45666666554442 33679999986433
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.63 E-value=0.009 Score=52.90 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCeEEEEcCccchHHH-HHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~-~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
..+|+=||+|.=.++. .+++. +....++++|+++..++.+++.++.. .....++.++.+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence 3599999999866554 44433 45568999999999999999887732 123578999999998877666789999987
Q ss_pred cccc
Q 023034 256 AAIH 259 (288)
Q Consensus 256 ~vl~ 259 (288)
....
T Consensus 200 alVg 203 (276)
T PF03059_consen 200 ALVG 203 (276)
T ss_dssp TT-S
T ss_pred hhcc
Confidence 6654
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.35 E-value=0.021 Score=52.05 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH--Hhc--CCCCCCCEEEEEecCCCC-CCCCCccceE
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV--QQE--SNFPKENFLLVRADISRL-PFASSSIDAV 252 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~--~~~--~g~~~~~i~~~~~d~~~l-p~~~~sfD~V 252 (288)
..+||-+|.|.|..++.+.+.-...+++-+|++|.|++.++++. ... +....++++++..|+... .-....||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 56799999999999999988743579999999999999999443 221 123457899999998764 2234589999
Q ss_pred EeccccccCCCccccc
Q 023034 253 HAGAAIHCWSSPSTGV 268 (288)
Q Consensus 253 ~~~~vl~h~~d~~~~l 268 (288)
+. .++||...-
T Consensus 370 IV-----Dl~DP~tps 380 (508)
T COG4262 370 IV-----DLPDPSTPS 380 (508)
T ss_pred EE-----eCCCCCCcc
Confidence 87 456665443
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.29 E-value=0.011 Score=52.88 Aligned_cols=82 Identities=26% Similarity=0.239 Sum_probs=65.5
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC-C-CCC
Q 023034 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS 246 (288)
Q Consensus 170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l-p-~~~ 246 (288)
...+.+.++..|||+.++.|.=+..+++... .+.+++.|+++.-+...++++++.| ..++.....|.... + ...
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeeccccccccccc
Confidence 4456778899999999999998888887743 5799999999999999999998873 56777777887765 2 223
Q ss_pred CccceEEe
Q 023034 247 SSIDAVHA 254 (288)
Q Consensus 247 ~sfD~V~~ 254 (288)
..||.|+.
T Consensus 155 ~~fd~Vlv 162 (283)
T PF01189_consen 155 SKFDRVLV 162 (283)
T ss_dssp TTEEEEEE
T ss_pred cccchhhc
Confidence 46999998
No 255
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.20 E-value=0.019 Score=49.56 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred HHHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCC------CCEEEEEec
Q 023034 167 ELMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRAD 238 (288)
Q Consensus 167 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~------~~i~~~~~d 238 (288)
+.+.+..+.+++ .+|||.-+|-|.-+..++..|. +|+++|-|+-+....+.-++....... .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 345555554444 4899999999999999888776 999999999876655543322100012 478999999
Q ss_pred CCC-CCCCCCccceEEecccccc
Q 023034 239 ISR-LPFASSSIDAVHAGAAIHC 260 (288)
Q Consensus 239 ~~~-lp~~~~sfD~V~~~~vl~h 260 (288)
..+ ++.++.+||+|+.-=.+.+
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 886 5556789999999666655
No 256
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.16 E-value=0.097 Score=44.74 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=53.6
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s 248 (288)
+...+|.+||-+|.++|.....+++- ++.+.|+++|.|+...+..-..+++. .|+.-+.+|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence 44567999999999999999999887 55789999999996554444333332 78888999997531 11247
Q ss_pred cceEEecc
Q 023034 249 IDAVHAGA 256 (288)
Q Consensus 249 fD~V~~~~ 256 (288)
.|+|++.-
T Consensus 144 VDvI~~DV 151 (229)
T PF01269_consen 144 VDVIFQDV 151 (229)
T ss_dssp EEEEEEE-
T ss_pred ccEEEecC
Confidence 89988743
No 257
>PHA01634 hypothetical protein
Probab=96.11 E-value=0.047 Score=42.41 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~ 224 (288)
.+.+|+|||.+-|.-+.++.-+|. ..|+++|+++...+..+++.+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 478999999999999999999987 69999999999999999976654
No 258
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.07 E-value=0.02 Score=48.60 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023034 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~ 219 (288)
-|....+.++.... .+++.|||.=||+|..+.+..+.+- +.+|+|+++..++.|++
T Consensus 176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 34555677776654 4589999999999999999999887 99999999999999874
No 259
>PRK11524 putative methyltransferase; Provisional
Probab=96.06 E-value=0.025 Score=50.48 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023034 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (288)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~ 223 (288)
....+.++.... .+|+.|||-=+|+|..+.+..+.+- +.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 444666666554 4699999999999999999998886 999999999999999999754
No 260
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.05 E-value=0.016 Score=50.82 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=53.8
Q ss_pred CCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHhcC---CCCCCCEEEEEecCCCCCCCC
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~l~~A~~~~~~~~---g~~~~~i~~~~~d~~~lp~~~ 246 (288)
..+|+|+|.|+|.++..+.+... ..+++-+|+|+.+.+.-++++.... .....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 46899999999999988877521 2589999999999988888876520 001345666 34555554
Q ss_pred CccceEEeccccccCC
Q 023034 247 SSIDAVHAGAAIHCWS 262 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~ 262 (288)
..-+|+++.++.-+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 456888888887775
No 261
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.94 E-value=0.009 Score=44.89 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (288)
+....+|||||+|.+.-.|...|. .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 455799999999999999999998 88999963
No 262
>PRK13699 putative methylase; Provisional
Probab=95.69 E-value=0.052 Score=46.86 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=49.7
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023034 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (288)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~ 224 (288)
-|....+.++.... .+|+.|||--||+|..+.+..+.+- +.+|+|+++...+.|.++++..
T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 34444566665444 4688999999999999999998876 9999999999999999998664
No 263
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.60 E-value=0.081 Score=46.78 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh---cC------------------------C---
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES------------------------N--- 226 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~---~~------------------------g--- 226 (288)
...+||--|||-|+++..++..|. .+.|.|.|--|+-..+-.+.. .. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 457899999999999999999998 999999999997665544321 00 0
Q ss_pred -------CCCCCEEEEEecCCCCCCCC---CccceEEeccccc
Q 023034 227 -------FPKENFLLVRADISRLPFAS---SSIDAVHAGAAIH 259 (288)
Q Consensus 227 -------~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~vl~ 259 (288)
....++.+..||+.++..++ ++||+|+..+-|.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID 176 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID 176 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence 01235677778887765444 7999999876443
No 264
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.046 Score=47.07 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE-EEEecCCCCC---CCCCccce
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP---FASSSIDA 251 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~-~~~~d~~~lp---~~~~sfD~ 251 (288)
.++..+||||+.||.|+..+.++|. ..|+++|..-+++.+--+. .+++. +...++..+. +. +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCCe
Confidence 4688999999999999999999986 5999999998877665443 34544 3444555442 22 35678
Q ss_pred EEeccccc
Q 023034 252 VHAGAAIH 259 (288)
Q Consensus 252 V~~~~vl~ 259 (288)
+++--++-
T Consensus 148 ~v~DvSFI 155 (245)
T COG1189 148 IVIDVSFI 155 (245)
T ss_pred EEEEeehh
Confidence 88755543
No 265
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.41 E-value=0.073 Score=45.17 Aligned_cols=77 Identities=14% Similarity=0.305 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH 253 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~ 253 (288)
.+|++||+||-|-|...-.++++.+ .+-+-+|..+..++..++..-.. ..++..+.+-.++. .++++.||.|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccccccCcceeE
Confidence 4589999999999999999888866 56778999999999888763322 46788888877653 36788999998
Q ss_pred eccc
Q 023034 254 AGAA 257 (288)
Q Consensus 254 ~~~v 257 (288)
----
T Consensus 175 yDTy 178 (271)
T KOG1709|consen 175 YDTY 178 (271)
T ss_pred eech
Confidence 7443
No 266
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.04 E-value=0.22 Score=46.38 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=61.0
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s 248 (288)
+.+.+|.+|||..+..|.=+.+++.. ...+.|++.|.+.+-++..+.++...| ..+......|..++| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence 45778999999999988755555443 223589999999999999999999883 567777888887765 444 8
Q ss_pred cceEEe
Q 023034 249 IDAVHA 254 (288)
Q Consensus 249 fD~V~~ 254 (288)
||-|+.
T Consensus 313 fDRVLL 318 (460)
T KOG1122|consen 313 FDRVLL 318 (460)
T ss_pred cceeee
Confidence 999986
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.00 E-value=0.024 Score=51.19 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHH-------HHHHHHhcCCCCCCCEEEEEecCCCCCCC-
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-------CYEFVQQESNFPKENFLLVRADISRLPFA- 245 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~-------A~~~~~~~~g~~~~~i~~~~~d~~~lp~~- 245 (288)
...+|+.|+|-=.|||.++...+..|. -|+|.||+-.|+.. .+.++++. |....-+.+..+|...-|+.
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhheeeecccCcchhh
Confidence 346799999999999999999999887 99999999998873 34566666 33345577889999987764
Q ss_pred CCccceEEec
Q 023034 246 SSSIDAVHAG 255 (288)
Q Consensus 246 ~~sfD~V~~~ 255 (288)
...||+|+|.
T Consensus 282 n~~fDaIvcD 291 (421)
T KOG2671|consen 282 NLKFDAIVCD 291 (421)
T ss_pred cceeeEEEeC
Confidence 4689999993
No 268
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.95 E-value=0.082 Score=44.84 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=39.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHH
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQ 222 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~ 222 (288)
+....++....+-++.|-.||.|+++-.+.-.. .-..|+|.|+++++++.|++|+.
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 444455555556789999999999876664432 12589999999999999999984
No 269
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.92 E-value=0.06 Score=50.22 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=49.3
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
..|||||.|||.++....+.|. -.|+++|.=..|.+.|++...+. +..++|.++.--..++
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC--CCccceeeecccccee
Confidence 4599999999999999999986 47999999999999999988775 3456777665444443
No 270
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.91 E-value=0.091 Score=46.69 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=52.5
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC--CCccceEEeccc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA 257 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~sfD~V~~~~v 257 (288)
+++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+.. .. .+.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999988875 467899999999988887632 21 566787776532 357999998653
No 271
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0099 Score=48.06 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC--CCCCCCccceE
Q 023034 176 VLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFASSSIDAV 252 (288)
Q Consensus 176 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~--lp~~~~sfD~V 252 (288)
-.|.+|||+|.| +|..+..++...+...|...|=++..++..++....+.-..........-+... ......+||.|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 347889999999 577777777777778999999999999888876433200011222222222221 11234589999
Q ss_pred EeccccccC---CCccccc-------ceEEEEecCc-ccHHH
Q 023034 253 HAGAAIHCW---SSPSTGV-------GVFFQVTLII-HVVED 283 (288)
Q Consensus 253 ~~~~vl~h~---~d~~~~l-------G~lvi~t~~~-~~l~e 283 (288)
++...+..- .+..+.+ |.-++..+.. ++|..
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~k 149 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQK 149 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHH
Confidence 998876421 1121221 7766666644 44444
No 272
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.22 Score=50.06 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=65.1
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCCCCCEEEEEec---CCCCCCCCCccceEEe
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRAD---ISRLPFASSSIDAVHA 254 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~-~~~~~g~~~~~i~~~~~d---~~~lp~~~~sfD~V~~ 254 (288)
..+.-.|.||=.....+.+.+|..+++-+|-+...-+.+-+. +... ....+++..|. +..+.|++=+-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 357788999999999999999999999999887664432222 2222 12334444443 2234455555556666
Q ss_pred ccccccCCCccccc-------------------ceEEEEecCccc
Q 023034 255 GAAIHCWSSPSTGV-------------------GVFFQVTLIIHV 280 (288)
Q Consensus 255 ~~vl~h~~d~~~~l-------------------G~lvi~t~~~~~ 280 (288)
....-+.+|....- |.+++-|+.+++
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 77777777754332 899999998874
No 273
>PRK00420 hypothetical protein; Validated
Probab=93.99 E-value=0.038 Score=42.02 Aligned_cols=31 Identities=26% Similarity=0.496 Sum_probs=23.5
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCC
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
-.||.|+.+|... ..+..+|+.|+..+....
T Consensus 24 ~~CP~Cg~pLf~l----------k~g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 24 KHCPVCGLPLFEL----------KDGEVVCPVHGKVYIVKS 54 (112)
T ss_pred CCCCCCCCcceec----------CCCceECCCCCCeeeecc
Confidence 3499999999862 246899999998766543
No 274
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.90 E-value=0.33 Score=42.33 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=59.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH--HHHhcCCCCCCCEEEEEecCCCC---CCCCCc-cc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESNFPKENFLLVRADISRL---PFASSS-ID 250 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~--~~~~~~g~~~~~i~~~~~d~~~l---p~~~~s-fD 250 (288)
...+|||+|.|+|..+..++.... ..|.-.|+..-+...... .-....+.....+....-+..+. .+.... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc-ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 366799999999977777776432 488888876644332222 11100000112333333333322 222233 99
Q ss_pred eEEeccccccCCCccccc----------ceEEEEecCcc
Q 023034 251 AVHAGAAIHCWSSPSTGV----------GVFFQVTLIIH 279 (288)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l----------G~lvi~t~~~~ 279 (288)
+|++..++.+-..+...+ |.+.+.+...+
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999988776665555 76777776654
No 275
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.63 Score=39.26 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI 249 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sf 249 (288)
+...++.+||=+|..+|.....+++--..+.++++|.|+.+.+..-..+++. .|+.-+.+|+.... .--+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence 3456799999999999999999998855679999999998766655554443 67778888887431 112457
Q ss_pred ceEEe
Q 023034 250 DAVHA 254 (288)
Q Consensus 250 D~V~~ 254 (288)
|+|+.
T Consensus 147 Dviy~ 151 (231)
T COG1889 147 DVIYQ 151 (231)
T ss_pred cEEEE
Confidence 88876
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.70 E-value=0.29 Score=42.09 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-----CCCCCCccce
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDA 251 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~sfD~ 251 (288)
+..++||||.|.--.=..+--+-+..+.+|.|+++..++.|+..+..+. .....+.+.+..=.+ +--.++.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-chhhheeEEeccCccccccccccccceeee
Confidence 4567999998865433333333223499999999999999999887651 112334444432221 1123578999
Q ss_pred EEecccccc
Q 023034 252 VHAGAAIHC 260 (288)
Q Consensus 252 V~~~~vl~h 260 (288)
++|+--+|-
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999877763
No 277
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.42 E-value=1.1 Score=38.73 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCCC-CCccceEE
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA-SSSIDAVH 253 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~~-~~sfD~V~ 253 (288)
-.|++||=+|=..- .+..++-.+...+|+.+|+++.+++..++.+++. ..++..+..|+.. +|-. .++||+++
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 35889999984442 3444444455579999999999999999998887 3459999999974 4422 48999999
Q ss_pred e
Q 023034 254 A 254 (288)
Q Consensus 254 ~ 254 (288)
.
T Consensus 118 T 118 (243)
T PF01861_consen 118 T 118 (243)
T ss_dssp E
T ss_pred e
Confidence 8
No 278
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.044 Score=41.43 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=24.3
Q ss_pred ccCCceecCCCCcccccCCCeeeeecc
Q 023034 94 AAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (288)
Q Consensus 94 i~~~~l~C~~C~~~~~~~~g~~~~~~~ 120 (288)
+.++.+.|+.||+.|++.+|+++++..
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 567899999999999999999999753
No 279
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.10 E-value=0.15 Score=44.84 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcC---------------CCCC----------C
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPK----------E 230 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~---------------g~~~----------~ 230 (288)
.+|.++||||||.-..-..-+... ..+++..|+++.-.+..++-++..+ |... .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 347789999999855432222222 2389999999999887776665431 1000 0
Q ss_pred CE-EEEEecCCCC-CCCC-----CccceEEeccccccCC-Cccccc-------------ceEEEEecCc
Q 023034 231 NF-LLVRADISRL-PFAS-----SSIDAVHAGAAIHCWS-SPSTGV-------------GVFFQVTLII 278 (288)
Q Consensus 231 ~i-~~~~~d~~~l-p~~~-----~sfD~V~~~~vl~h~~-d~~~~l-------------G~lvi~t~~~ 278 (288)
.| .++..|.... |+.. ..||+|++.++|+... |.+... |.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 12 3677888754 3333 2599999999999764 443322 7777766543
No 280
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=93.08 E-value=0.057 Score=33.65 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=19.5
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
+.||.|+......+ ...+.+.|+.||.+
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLV 28 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BB
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCE
Confidence 47999999653322 24678999999864
No 281
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=92.95 E-value=0.072 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=24.5
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
++.||.|+..+...+. ..+..+.|+.||..+-.
T Consensus 2 ~~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENP-------ELGELVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence 3579999998766442 23568899999987755
No 282
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.34 E-value=0.028 Score=42.01 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=23.8
Q ss_pred EEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC--CCCCCccceEEecc
Q 023034 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 256 (288)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~~~~ 256 (288)
||||+..|..+..+++.... .+++++|+.+. .+.+++.+++. ....++.++.++..+. .+..+++|+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 79999999988887765322 37999999995 22333333221 1135799999998643 23357899999854
No 283
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=0.56 Score=42.96 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=38.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhC----C----CCEEEEEeCCHHHHHHHHHHHHhc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSG----L----FSLVVALDYSENMLKQCYEFVQQE 224 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~----~----~~~v~gvD~s~~~l~~A~~~~~~~ 224 (288)
..-.++|||.|+|.++..+.+.. | ..++.-+|+|++..+.=+++++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 35679999999999887776542 2 478999999999988888777654
No 284
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=92.09 E-value=0.089 Score=40.97 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=19.8
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
-||.|+.||...+ |.++|+.|++
T Consensus 30 hCp~Cg~PLF~Kd-----------G~v~CPvC~~ 52 (131)
T COG1645 30 HCPKCGTPLFRKD-----------GEVFCPVCGY 52 (131)
T ss_pred hCcccCCcceeeC-----------CeEECCCCCc
Confidence 4999999998743 7899999995
No 285
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=92.06 E-value=0.12 Score=31.18 Aligned_cols=34 Identities=24% Similarity=0.713 Sum_probs=22.9
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
..||.|+..+...+.. . ......++|+.|++.+.
T Consensus 3 i~CP~C~~~f~v~~~~---l-~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDK---L-PAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHH---c-ccCCcEEECCCCCcEee
Confidence 5799999976554311 0 02456899999998763
No 286
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=91.96 E-value=0.11 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.3
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
.||.|+..... ..-.|+.||+.+.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 49999997654 3578999998663
No 287
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=91.92 E-value=0.16 Score=35.45 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=33.8
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecC--CCCcccccCCCeeeeecc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAA 120 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~ 120 (288)
++.||.|+...........+.+ ....+..|. .||+.|...+.+...+..
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~ 51 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVK 51 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence 4789999996533332222222 556788999 999999988777766654
No 288
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.56 E-value=0.1 Score=27.92 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=16.4
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.||.|+.++.. +.-+|+.||+
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCC
Confidence 39999998864 3567999985
No 289
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=91.40 E-value=0.2 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=22.0
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
..+.||.|+..+.... ....++|+.||...
T Consensus 2 ~~y~C~~CG~~~~~~~---------~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDE---------YGTGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECC---------CCCceECCCCCCeE
Confidence 3578999999876643 12379999998644
No 290
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.36 E-value=2.1 Score=39.23 Aligned_cols=88 Identities=20% Similarity=0.071 Sum_probs=44.4
Q ss_pred CCCCeEEEEcCccchHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCCC--EEEE
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSG----------------LFSLVVALDYSENMLKQCYEFVQQES--NFPKEN--FLLV 235 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~----------------~~~~v~gvD~s~~~l~~A~~~~~~~~--g~~~~~--i~~~ 235 (288)
...-+|+|+||..|..+..+...- +..+|+--|+-.+--...-+.+.... -....+ +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 345689999999999887665421 12477888875532221111111110 000122 2334
Q ss_pred EecCCCCCCCCCccceEEeccccccCCC
Q 023034 236 RADISRLPFASSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 236 ~~d~~~lp~~~~sfD~V~~~~vl~h~~d 263 (288)
-+.+..--|++++.|++++..+|||+..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred CchhhhccCCCCceEEEEEechhhhccc
Confidence 4556655688999999999999999865
No 291
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=91.31 E-value=0.1 Score=30.83 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=16.2
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
.||.|+.+|...... ......+.|++||..+
T Consensus 2 fC~~CG~~l~~~ip~-----gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 2 FCPQCGGPLERRIPE-----GDDRERLVCPACGFIH 32 (34)
T ss_dssp B-TTT--B-EEE--T-----T-SS-EEEETTTTEEE
T ss_pred ccccccChhhhhcCC-----CCCccceECCCCCCEE
Confidence 499999988654211 1234688999998654
No 292
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=91.18 E-value=0.12 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
.||.|+.+..... .+....|+.|+..+
T Consensus 5 fC~~CG~~t~~~~---------~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAP---------GGWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred ccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence 5999999887654 34688999998754
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.10 E-value=0.75 Score=42.02 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEec-CCCCCCCCCccc
Q 023034 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID 250 (288)
Q Consensus 173 l~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d-~~~lp~~~~sfD 250 (288)
.+.++|.+|+=+|+| -|.++..+++... .+|+++|.+++-++.|++.- .-.++... ....+--.+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCc
Confidence 345679999999988 3456677777422 59999999999999998851 11223322 222211123499
Q ss_pred eEEecccccc-CCCccccc---ceEEEEecC
Q 023034 251 AVHAGAAIHC-WSSPSTGV---GVFFQVTLI 277 (288)
Q Consensus 251 ~V~~~~vl~h-~~d~~~~l---G~lvi~t~~ 277 (288)
+|+..-. .+ +..-.+.| |++++....
T Consensus 232 ~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998777 33 22222233 777776655
No 294
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=90.96 E-value=0.66 Score=43.19 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=48.3
Q ss_pred CCeEEEEcCccchHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHHhcC-------C---CCCCCE
Q 023034 178 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQES-------N---FPKENF 232 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~l~~A~~~~~~~~-------g---~~~~~i 232 (288)
..+|+|+|||+|.++..+.. + .|..+|+.-|+-.+--...-+.+.... . ....+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654422 1 123567777765433222222221100 0 000111
Q ss_pred EEEE---ecCCCCCCCCCccceEEeccccccCCC
Q 023034 233 LLVR---ADISRLPFASSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 233 ~~~~---~d~~~lp~~~~sfD~V~~~~vl~h~~d 263 (288)
-|+. +.+-.--|+.++.+++++.+++||+..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 1222 333344478999999999999999865
No 295
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=90.85 E-value=0.075 Score=36.02 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=22.1
Q ss_pred ccccccccCCCCCccccccccccCCceeCCCCCC-CCc
Q 023034 46 SSTAFVETKPSEPSFVENEASTSKNVLACPICYK-PLT 82 (288)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~CP~C~~-~l~ 82 (288)
-.+|+++.+++. +..++|..++|++..|+.|+. +|.
T Consensus 16 G~~Pl~~~f~~~-~~~~~e~~~pL~l~~C~~CglvQl~ 52 (62)
T PF08421_consen 16 GDQPLANSFLKP-ELDEPEPRYPLDLYVCEDCGLVQLE 52 (62)
T ss_dssp EEEE-TT--B-T-TS-S---EEEEEEEEETTT--EEES
T ss_pred CCCCccccccCh-hhCCCceEECCEEEECCCCCchhcC
Confidence 457899999998 888889999999999999998 443
No 296
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=0.18 Score=36.24 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=23.3
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
...||.|+.+-... +..+.|.|..|+..+.-
T Consensus 35 ~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 35 KHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAG 65 (89)
T ss_pred CCcCCCCCCcceee---------eccCeEEcCCCCCeecc
Confidence 35699999973332 46789999999987653
No 297
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.42 E-value=0.37 Score=40.83 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
+..|+|+|.-.|.-+..+++. +..++|+|+|++........ .+. .....++++++||..+.
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~--hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IES--HPMSPRITFIQGDSIDP 97 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG------TTEEEEES-SSST
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhh--ccccCceEEEECCCCCH
Confidence 579999999999877766543 35679999999653322111 111 01137899999998754
No 298
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=90.33 E-value=0.15 Score=38.85 Aligned_cols=22 Identities=32% Similarity=0.848 Sum_probs=18.8
Q ss_pred CCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
||+|+++|... .+.|++|+...
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEE
Confidence 99999999874 59999998654
No 299
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.25 E-value=1.4 Score=34.92 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--CCCCccceEEeccccccCCCccc
Q 023034 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPST 266 (288)
Q Consensus 203 ~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~sfD~V~~~~vl~h~~d~~~ 266 (288)
+|+|.|+-+.+++.+++++++.+ ...++.++..+=+++. .+.+.+|+++.+.. ++|.-++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk 62 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDK 62 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-T
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCC
Confidence 58999999999999999999872 3357999987766554 23358999887754 4554433
No 300
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=89.93 E-value=0.26 Score=29.47 Aligned_cols=33 Identities=21% Similarity=0.691 Sum_probs=21.6
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
+.||.|+......+.. . ...+..++|+.|++.+
T Consensus 3 i~Cp~C~~~y~i~d~~---i-p~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK---I-PPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH---C-CCCCcEEECCCCCCEe
Confidence 5799999966543311 0 0234578999999865
No 301
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=89.88 E-value=0.17 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.714 Sum_probs=21.2
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
+.||.|+......... . ......++|++|+..+.
T Consensus 3 ~~CP~C~~~~~v~~~~---~-~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ---L-GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHH---c-CCCCCEEECCCCCCEEE
Confidence 6799999965443211 0 01234689999997653
No 302
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.74 E-value=3.4 Score=40.04 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=21.9
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 023034 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~ 211 (288)
..+--.|.|+=.....+.+.+++..|..+|-+.
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 345566777777777777776666777776543
No 303
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.60 E-value=0.24 Score=32.37 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=21.3
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
-.|+.|+.++...+ ..+.|+.|+.-|-
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCccc
Confidence 35999999987644 5899999987664
No 304
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.55 E-value=1.2 Score=41.19 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=34.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~ 219 (288)
+-+.|+|+|.|.|.+++.+.-.. +..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 35689999999999999997653 3699999999877666654
No 305
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.36 E-value=0.61 Score=42.78 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEe
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHA 254 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~ 254 (288)
..+|||.=+|+|.=+..++...+...++.-|+|+..++.+++++..+. ..+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec
Confidence 678999999999988777777664589999999999999999988762 34455555776554322 356777744
No 306
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.22 E-value=0.68 Score=40.92 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-CCC-CCCccceEE
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH 253 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~sfD~V~ 253 (288)
..|+.|+-+| -.-..+.+++-.+..-+|..+|+++..+..-.+.+++.+ ..++..+.-|+.+ +|- -...||+.+
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeee
Confidence 4578899999 555666676666666799999999999999988887772 5668888888874 331 126899887
Q ss_pred e
Q 023034 254 A 254 (288)
Q Consensus 254 ~ 254 (288)
.
T Consensus 227 T 227 (354)
T COG1568 227 T 227 (354)
T ss_pred c
Confidence 6
No 307
>PHA00626 hypothetical protein
Probab=89.02 E-value=0.31 Score=31.85 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=21.3
Q ss_pred eCCCCCCC-CcccCCCCCccccccCCceecCCCCccccc
Q 023034 73 ACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 73 ~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.||.|++. +...+.- .-..+.+.|+.|+..|..
T Consensus 2 ~CP~CGS~~Ivrcg~c-----r~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 2 SCPKCGSGNIAKEKTM-----RGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCceeeeecee-----cccCcceEcCCCCCeech
Confidence 59999994 4442210 012478999999987653
No 308
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=88.72 E-value=0.6 Score=30.00 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=23.5
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
.||.|+.-|...... ....+.|+.|+..+.+...
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 599999977554311 1237899999988776544
No 309
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.71 E-value=0.23 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=16.6
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
..||.|+..+.. +.-+|++||.
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCC
Confidence 469999996543 4678999985
No 310
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=88.50 E-value=0.19 Score=40.71 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=23.8
Q ss_pred CceeCCCCCCCCcccCCCCCcccccc-------CCceecCCCCcccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAA-------GSSLQCNTCKKTYS 109 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~-------~~~l~C~~C~~~~~ 109 (288)
..-+||.|+++|....... ..+.++ ...+.|++||+.|-
T Consensus 96 e~~RCp~CN~~L~~vs~ee-v~~~Vp~~~~~~~~~f~~C~~CgkiYW 141 (165)
T COG1656 96 EFSRCPECNGELEKVSREE-VKEKVPEKVYRNYEEFYRCPKCGKIYW 141 (165)
T ss_pred ccccCcccCCEeccCcHHH-HhhccchhhhhcccceeECCCCccccc
Confidence 3567999999886653211 111122 23567999998663
No 311
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=88.49 E-value=0.26 Score=28.16 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=14.0
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
.||.|++..... +...+.|+.|++.
T Consensus 4 ~Cp~C~se~~y~----------D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYE----------DGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-----------SSSEEETTTTEE
T ss_pred CCCCCCCcceec----------cCCEEeCCccccc
Confidence 499999977664 3578999999864
No 312
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.43 E-value=2 Score=37.90 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (288)
.+...++|+|||.|.++.++++.. ....++.||-...-.+ +..++.... ....+.-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~--~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDE--SEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccC--CCCceEEEEEEeeccc
Confidence 456789999999999999999876 4468999998664332 223333320 0135667777877764
No 313
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.22 E-value=1.7 Score=37.68 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=52.2
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~s 248 (288)
+..+++.+||=+|+++|.......+- ++..-|+++|.|+-.=+.....+++ -.|+.-+..|+.... ..-+-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 45567999999999999988888876 7778899999998443322222222 267777777876421 11235
Q ss_pred cceEEe
Q 023034 249 IDAVHA 254 (288)
Q Consensus 249 fD~V~~ 254 (288)
.|+|++
T Consensus 227 VDvIFa 232 (317)
T KOG1596|consen 227 VDVIFA 232 (317)
T ss_pred EEEEec
Confidence 677766
No 314
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.20 E-value=1.8 Score=40.30 Aligned_cols=54 Identities=7% Similarity=-0.071 Sum_probs=40.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023034 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~ 223 (288)
.-.+.|...++++||-|..|-...+.++. .+| .+|++||+|+.++...+-++..
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~-~~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLL-AGP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHh-cCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 34567778889999999766555555544 455 5999999999998888766554
No 315
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=88.04 E-value=0.92 Score=42.25 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-CCCCccceEEe
Q 023034 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA 254 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 254 (288)
+.+|||.=+|+|.=+..++.. .....|+.-|+|+++++..+++++.+ +.....+.+...|+..+- .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 568999999999876666665 33358999999999999999999887 332236888888887543 24678999865
No 316
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=87.75 E-value=0.53 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=23.0
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
.-.|+.|++.+.... ..+.+.|..|+..++
T Consensus 3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 456999999876632 347899999998764
No 317
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=87.75 E-value=0.25 Score=34.15 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=18.0
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
+.||.|+.+|.+.+ +.++|..|+..|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 45999999998753 67899999876653
No 318
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.92 E-value=2.2 Score=38.69 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=39.9
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
-..+.|.+||-+|+|. |......++...-.+|+.+|+++.-++.|++.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF 213 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence 3456799999999996 87777777764447999999999999999983
No 319
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=86.60 E-value=0.42 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=19.8
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
..||.|+.-|....+. .....|..|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence 4699999977654321 2222899999877653
No 320
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.17 E-value=7 Score=39.40 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=18.7
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (288)
.+-..|-|+=.+...+.+.+++..|.-+|-+
T Consensus 431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d 461 (679)
T PRK05580 431 DLVPVGPGTERLEEELAELFPEARILRIDRD 461 (679)
T ss_pred eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence 4555566666666666666555566666643
No 321
>PTZ00357 methyltransferase; Provisional
Probab=86.00 E-value=3.4 Score=41.22 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=49.7
Q ss_pred eEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------CCCEEEEEecCCCCCCC---
Q 023034 180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFP-------KENFLLVRADISRLPFA--- 245 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~-------~~~i~~~~~d~~~lp~~--- 245 (288)
.|+-+|+|-|.+.....+. +-..+|++||-++..+.....+.... ..+ ...++++..|...+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~-eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND-PEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc-cccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999987655443 44468999999966554444443221 011 23589999999887432
Q ss_pred --------CCccceEEe
Q 023034 246 --------SSSIDAVHA 254 (288)
Q Consensus 246 --------~~sfD~V~~ 254 (288)
-+++|+|++
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 137999987
No 322
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=85.89 E-value=0.58 Score=30.21 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=18.9
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
.||.|+..+... ..+.+.|..||..+
T Consensus 22 fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 22 FCPRCGSGFMAE----------HLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCCCcchhec----------cCCcEECCCcCCEE
Confidence 699999852221 24789999998765
No 323
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=85.52 E-value=1.2 Score=39.91 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=50.5
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---CCCCccceEEecc
Q 023034 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA 256 (288)
Q Consensus 180 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~sfD~V~~~~ 256 (288)
+++|+-||-|.+..-+.+.|. ..+.++|+++...+.-+.+. . ....+|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999985 47889999999888887763 2 67888988775 333 589988864
Q ss_pred c
Q 023034 257 A 257 (288)
Q Consensus 257 v 257 (288)
-
T Consensus 70 P 70 (335)
T PF00145_consen 70 P 70 (335)
T ss_dssp -
T ss_pred C
Confidence 3
No 324
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.33 E-value=4 Score=36.18 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023034 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (288)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~ 224 (288)
....+.++.. ...++..|||.=+|+|..+......+- ..+|+|+++.-++.+.+++...
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 3334555554 456799999999999999999988876 9999999999999999998764
No 325
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.13 E-value=1.2 Score=39.82 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCCCEEEEEecCCCC--CCCCCccceEE
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAVH 253 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~-~g~~~~~i~~~~~d~~~l--p~~~~sfD~V~ 253 (288)
..++||-||-|.|.+.+...+.-.-.++.-+|++...++..++.+... .|...+++.+..||...+ ..+.++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 467899999999999998888743458999999999999999987653 234567899999987543 23478999998
Q ss_pred e
Q 023034 254 A 254 (288)
Q Consensus 254 ~ 254 (288)
.
T Consensus 201 ~ 201 (337)
T KOG1562|consen 201 T 201 (337)
T ss_pred E
Confidence 7
No 326
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=85.05 E-value=0.28 Score=29.89 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=18.0
Q ss_pred eCCCCCCCC-cccCCCCCccccccCCceecCCCCccc
Q 023034 73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 73 ~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
.||.|+..- .....+..+.++...-.+.|.+|++.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 599999841 111112222333445577899998754
No 327
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=85.00 E-value=0.36 Score=40.03 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=25.3
Q ss_pred ccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 65 ~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
....-..+.||.|+...+..+ +....+.|+.||.
T Consensus 111 ~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~ 144 (178)
T PRK06266 111 EEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGE 144 (178)
T ss_pred hccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCC
Confidence 334456789999999776654 4456899999985
No 328
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=85.00 E-value=0.51 Score=28.91 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=20.4
Q ss_pred eCCCCCCCC-cccCCCCCccccccCCceecCCCCccc
Q 023034 73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 73 ~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
.||.|+..- .....+..+.++...-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 599999832 211112222233344577899998754
No 329
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.97 E-value=6.3 Score=37.83 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCC------CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 023034 164 KEFELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (288)
Q Consensus 164 ~~~~~l~~~l~~~~------~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~ 237 (288)
.+...+.+.+...+ .-+++|+-||.|.+..-+...|. -.|.++|+++.+.+.-+.+... .+....+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~ 141 (467)
T PRK10458 68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE 141 (467)
T ss_pred HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence 34556666654322 45899999999999999988876 3678899999887776665321 122334456
Q ss_pred cCCCCC
Q 023034 238 DISRLP 243 (288)
Q Consensus 238 d~~~lp 243 (288)
|+..+.
T Consensus 142 DI~~i~ 147 (467)
T PRK10458 142 DIRDIT 147 (467)
T ss_pred ChhhCc
Confidence 666553
No 330
>PRK10220 hypothetical protein; Provisional
Probab=84.95 E-value=0.8 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.583 Sum_probs=24.0
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
-.||.|.+.....+ ...+.|+.|++.+...
T Consensus 4 P~CP~C~seytY~d----------~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 4 PHCPKCNSEYTYED----------NGMYICPECAHEWNDA 33 (111)
T ss_pred CcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence 45999999888754 5689999999877654
No 331
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.86 E-value=0.8 Score=40.55 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHH
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l 214 (288)
.+++|||+|||.|.-...+...+. ..+...|++...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 588999999999998888887774 4888888888776
No 332
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.78 E-value=3.1 Score=38.28 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=37.6
Q ss_pred CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 177 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
++.+|+-+|||. |.++..+++.....+|+.+|.++.-++.|++.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 455999999997 88888887775557999999999999999985
No 333
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=84.77 E-value=2.2 Score=33.93 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.6
Q ss_pred EEcCccc--hHHHHHH--HhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 183 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
|||++.| .....+. ..++..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 346667999999999999998888
No 334
>PF14353 CpXC: CpXC protein
Probab=84.66 E-value=0.52 Score=36.71 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=23.4
Q ss_pred eeCCCCCCCCcccCCCCCcc-------cccc---CCceecCCCCcccccCCC
Q 023034 72 LACPICYKPLTWIGDSSLSI-------ESAA---GSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~-------~~i~---~~~l~C~~C~~~~~~~~g 113 (288)
+.||.|+..........++. ..+- -..+.|++||+.+...-.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence 46999998643322111211 1111 235689999988776433
No 335
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.23 E-value=3.4 Score=37.88 Aligned_cols=102 Identities=14% Similarity=0.015 Sum_probs=59.2
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC--CCCCC-CCcc
Q 023034 174 KPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFA-SSSI 249 (288)
Q Consensus 174 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~--~lp~~-~~sf 249 (288)
......+|||+|.|.|.-+.++..-.|. -.++-++.|+..-+......... ......+...|+. .++++ ...|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCCcccee
Confidence 3344667999999999888877776653 35677788886655554433322 1223333333433 23332 2456
Q ss_pred ceEEeccccccCCCccccc-------------ceEEEEecCc
Q 023034 250 DAVHAGAAIHCWSSPSTGV-------------GVFFQVTLII 278 (288)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l-------------G~lvi~t~~~ 278 (288)
++|+..+-|-|...+.... |.|+|...+-
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6666666555555444221 8888877654
No 336
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=84.23 E-value=0.74 Score=28.37 Aligned_cols=23 Identities=30% Similarity=0.718 Sum_probs=17.7
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCC
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~ 105 (288)
.||.|+.+|.... .+...|..|+
T Consensus 19 ~Cp~C~~PL~~~k----------~g~~~Cv~C~ 41 (41)
T PF06677_consen 19 HCPDCGTPLMRDK----------DGKIYCVSCG 41 (41)
T ss_pred ccCCCCCeeEEec----------CCCEECCCCC
Confidence 4999999998732 3578999885
No 337
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.19 E-value=11 Score=37.81 Aligned_cols=75 Identities=12% Similarity=-0.021 Sum_probs=45.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc-
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~- 256 (288)
+..+.-.|-|+-.....+.+.+|+..|.-+|-+. +++.. .....++.+.=...|.-.+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~~-----------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDTV-----------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHhh-----------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 4457888999999999999998888888888542 22211 1245566665432333335566665433
Q ss_pred -ccccCCCc
Q 023034 257 -AIHCWSSP 264 (288)
Q Consensus 257 -vl~h~~d~ 264 (288)
.+-+.+|.
T Consensus 498 D~~L~~pDf 506 (665)
T PRK14873 498 WALLGRQDL 506 (665)
T ss_pred hhhhcCCCc
Confidence 34445553
No 338
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.17 E-value=2.5 Score=36.19 Aligned_cols=71 Identities=7% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
+.+....+.-...-|.+||.|.|...+.+.+.+. .+...+|.+...+.-.+-..+.. ..+..+..+|+...
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence 4445554544567899999999999999998875 57888888887665554443332 45677777887643
No 339
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=84.17 E-value=0.48 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=11.3
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCC
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT 103 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~ 103 (288)
.||.|+++|.... .+-.++|.+
T Consensus 1 ~CP~C~s~l~~~~---------~ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREE---------GEVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-C---------CTTCEEE--
T ss_pred CcCCCCCEeEcCC---------CCEeEECCC
Confidence 4999999998654 234677864
No 340
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.14 E-value=2.2 Score=38.64 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=48.0
Q ss_pred EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEecc
Q 023034 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (288)
Q Consensus 181 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~~ 256 (288)
|+|+-||-|.+..-+.+.|. ..+.++|+++..++.-+.+. .. .++.+|+.++... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999998886 34668999999888877763 22 3456777766421 23578888754
No 341
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=84.10 E-value=0.4 Score=38.93 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=25.6
Q ss_pred ccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 65 ~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
....-..+.||.|+...+..+ +....+.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 344456788999998776654 44568999999853
No 342
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.09 E-value=0.57 Score=32.87 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=24.2
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
++.||+|+-.|......+ -..=.|+.|+-+...+..
T Consensus 1 ~llCP~C~v~l~~~~rs~-------vEiD~CPrCrGVWLDrGE 36 (88)
T COG3809 1 MLLCPICGVELVMSVRSG-------VEIDYCPRCRGVWLDRGE 36 (88)
T ss_pred CcccCcCCceeeeeeecC-------ceeeeCCccccEeecchh
Confidence 467999999886654221 123479999977776543
No 343
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=83.19 E-value=0.66 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.627 Sum_probs=19.7
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
..|+.|++.+.. ...+.+.|..||+.
T Consensus 9 ~~C~~C~~~~~~----------~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFY----------SDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeE----------ccCCEEEhhhCceE
Confidence 459999998433 24689999999874
No 344
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=83.16 E-value=0.94 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.726 Sum_probs=23.5
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
.||.|++.....+ ...+.|+.|++.+...
T Consensus 4 ~CP~C~seytY~d----------g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 4 PCPKCNSEYTYHD----------GTQLICPSCLYEWNEN 32 (109)
T ss_pred cCCcCCCcceEec----------CCeeECcccccccccc
Confidence 5999999888754 5689999999877654
No 345
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=83.08 E-value=6.3 Score=38.15 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCcHHHHHHHHhhcCCC--CCCeEEEEcCccchHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCE
Q 023034 159 FPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (288)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i 232 (288)
++.|....+.+.+.+.+. ++..|.|..||+|.++....+. + ....++|-+....|...++.++... +......
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~t~ 275 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYANF 275 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCcccc
Confidence 566666667666665543 4568999999999988765432 1 1146999999999999999886544 1111222
Q ss_pred EEEEecCCCC-CC-CCCccceEEecc
Q 023034 233 LLVRADISRL-PF-ASSSIDAVHAGA 256 (288)
Q Consensus 233 ~~~~~d~~~l-p~-~~~sfD~V~~~~ 256 (288)
....+|...- .+ ....||.|+++-
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~Np 301 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNP 301 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecC
Confidence 2333443322 22 234688887654
No 346
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=82.84 E-value=0.75 Score=36.84 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=24.0
Q ss_pred ceeCCCCCCCCcccCCCCCccccc-------cCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESA-------AGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i-------~~~~l~C~~C~~~~~~ 110 (288)
.-+|+.|+++|.......+ .+.+ ....+.|+.||+.|-.
T Consensus 91 ~sRC~~CN~~L~~v~~~~v-~~~vp~~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEV-KDRVPPYVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred CCccCCCCcEeeechhhcc-ccccCccccccCCeEEECCCCCCEecc
Confidence 4579999998755432111 1111 2247789999988754
No 347
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=82.71 E-value=1.1 Score=28.07 Aligned_cols=27 Identities=15% Similarity=0.431 Sum_probs=20.3
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
.+.|..|+...... ..+.++|+.||+.
T Consensus 2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~r 28 (44)
T smart00659 2 IYICGECGRENEIK----------SKDVVRCRECGYR 28 (44)
T ss_pred EEECCCCCCEeecC----------CCCceECCCCCce
Confidence 37899999976543 2467999999864
No 348
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=82.54 E-value=1.3 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=13.5
Q ss_pred CCCCCCCCcccCCCCCccccccCCceecCCCC
Q 023034 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (288)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~ 105 (288)
|-.|+..|...+ ....+.|++||
T Consensus 1 C~sC~~~i~~r~---------~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPRE---------QAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcc---------cCceEeCCCCC
Confidence 556666665432 23467777776
No 349
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=82.30 E-value=0.82 Score=27.71 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=20.6
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
-.+.||.|+..+...... .......|+.||.
T Consensus 4 Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred EEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 357899999965433210 1246788999997
No 350
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.96 E-value=0.92 Score=34.35 Aligned_cols=30 Identities=17% Similarity=0.488 Sum_probs=22.3
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
..||.||..+--- ...-..|+.||..|...
T Consensus 10 R~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence 5699999975432 13568899999988765
No 351
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=81.88 E-value=3.9 Score=34.40 Aligned_cols=43 Identities=30% Similarity=0.368 Sum_probs=35.3
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH
Q 023034 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN 212 (288)
Q Consensus 170 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~ 212 (288)
+.+...+++.+|+|+=.|.|++++.++.. ++.+.|++.-+.+.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 44556778999999999999999999887 66678888776654
No 352
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=81.74 E-value=0.67 Score=34.02 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=27.0
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCe
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~ 114 (288)
++.||.|+.-|...... .-..+.|..|...+++...+
T Consensus 1 m~FCP~Cgn~Live~g~-------~~~rf~C~tCpY~~~I~~ei 37 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGE-------SCNRFSCRTCPYVFPISREI 37 (105)
T ss_pred CcccCCCCCEEEEecCC-------eEeeEEcCCCCceeeEeeee
Confidence 46799999988765421 14678999999888876443
No 353
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=81.73 E-value=0.67 Score=37.14 Aligned_cols=37 Identities=16% Similarity=0.542 Sum_probs=23.0
Q ss_pred cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
.-..+.||.|+......+.. .... +.+.+.|+.||..
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~--~~~d-~~~~f~Cp~Cg~~ 132 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEAN--QLLD-MDGTFTCPRCGEE 132 (147)
T ss_pred CCcEEECcCCCCEeeHHHHH--HhcC-CCCcEECCCCCCE
Confidence 34578899999866543211 1101 2455999999863
No 354
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=81.59 E-value=0.98 Score=36.50 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=22.7
Q ss_pred eeCCCCCCCCccc-CCCCCc-cccccCCceecCCCCcccccCC
Q 023034 72 LACPICYKPLTWI-GDSSLS-IESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 72 l~CP~C~~~l~~~-~~~~~~-~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
+.||-|+.+-+.. +..... .+.+. ...+|++||..+..-+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~-~~~~c~~c~~~f~~~e 42 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIR-RRRECLACGKRFTTFE 42 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCcee-eeeeccccCCcceEeE
Confidence 4699999865221 111111 11222 2378999999887543
No 355
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.21 E-value=4.2 Score=36.40 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=39.2
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 023034 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~ 224 (288)
+..+.+.+|+-||.|--..+.++.+.- .+|..+|+++..+...+-++...
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHH
Confidence 344568899999999766777777654 49999999999988888776554
No 356
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=81.12 E-value=1.1 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=18.0
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
++||.|+..-.. .. -....++|..|++
T Consensus 19 ~~CP~Cg~~~~~-~~-------~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHY-RL-------KTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeE-Ee-------CCCCeEECCCCCC
Confidence 679999985211 10 1147899999985
No 357
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=80.82 E-value=1.5 Score=39.23 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCeEEEEcCccchHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEecc
Q 023034 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 256 (288)
+..|+|+=+|-|+|+. .+...+. ..|+++|.++..++..++.++.+ ....+...+.+|-.... ++...|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~~-~~~~AdrVnLGL 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNPK-PRLRADRVNLGL 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhc--chHHHHHhhhccccccC-ccccchheeecc
Confidence 6789999999999988 6666665 69999999999999999887765 12233344555544433 356677776543
No 358
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=80.75 E-value=1.8 Score=40.54 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=53.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~ 240 (288)
+.+.... .+|..|-|+-||-|.+...++..+- +|++-|.++.++++.+.+++.. -+...++..+..|+.
T Consensus 241 erlsg~f--k~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lN-kv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 241 ERLSGLF--KPGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLN-KVDPSAIEIFNMDAK 309 (495)
T ss_pred HHHhhcc--CCcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccc-ccchhheeeecccHH
Confidence 4444433 3488999999999999999999884 9999999999999999988764 122234666666654
No 359
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=80.21 E-value=4.9 Score=33.76 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~ 241 (288)
.-...+.+-..+...|+|+|.-.|.-+.+++.. |...+|+++|++-..+.-+... .+++.+++++..+
T Consensus 58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~d 129 (237)
T COG3510 58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTD 129 (237)
T ss_pred HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCC
Confidence 333444444445678999999999876666553 5446999999998765444332 4788899988765
Q ss_pred C
Q 023034 242 L 242 (288)
Q Consensus 242 l 242 (288)
.
T Consensus 130 p 130 (237)
T COG3510 130 P 130 (237)
T ss_pred H
Confidence 4
No 360
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=80.14 E-value=0.88 Score=33.10 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=21.9
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
..+.||.|+..-... ...+.|.|..|+..+.
T Consensus 34 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKR---------VATGIWKCKKCGKKFA 64 (90)
T ss_dssp S-BEESSSSSSEEEE---------EETTEEEETTTTEEEE
T ss_pred CCCcCCCCCCceeEE---------eeeEEeecCCCCCEEe
Confidence 346799999954332 3468999999987554
No 361
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=79.78 E-value=4.2 Score=39.95 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCH
Q 023034 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSE 211 (288)
Q Consensus 175 ~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~ 211 (288)
..++..|||+||..|.|+....+.. .++-|+|+|+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3458889999999999999988874 356899999976
No 362
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.41 E-value=5.1 Score=38.07 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCeEEEEcCccchH--HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEe-cC--CCCCCCC-Cccc
Q 023034 177 LGGNIIDASCGSGLF--SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI--SRLPFAS-SSID 250 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~--~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~-d~--~~lp~~~-~sfD 250 (288)
....++|+|.|.|.- +.......-...++-||.|..|+......+.... ..+-.++.. -. ..+|... ..||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCccccee
Confidence 356788888876643 3333333333579999999999999988876510 011111111 11 1345443 4599
Q ss_pred eEEeccccccCCCccccc
Q 023034 251 AVHAGAAIHCWSSPSTGV 268 (288)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l 268 (288)
+|++.+.++++.....-+
T Consensus 277 lvi~ah~l~~~~s~~~R~ 294 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRL 294 (491)
T ss_pred eEEeeeeeeccCCchhhh
Confidence 999999999988766433
No 363
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.31 E-value=8.7 Score=34.82 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 175 ~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
..++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 34588999999874 66666666653323799999999998888763
No 364
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=79.29 E-value=1.3 Score=37.92 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC---
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--- 242 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l--- 242 (288)
.+..++++.+.++...+|.--|.|..+..+.+..+...++++|-+|-+-+.|+...... -.+.+..+.+.+..+
T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHHH
Confidence 46678888888999999999999999999999888789999999998887777654321 012222233333322
Q ss_pred ----CCCCCccceEEecccccc--CCCccccc
Q 023034 243 ----PFASSSIDAVHAGAAIHC--WSSPSTGV 268 (288)
Q Consensus 243 ----p~~~~sfD~V~~~~vl~h--~~d~~~~l 268 (288)
.+.+.++|.|++...... +.+|++-+
T Consensus 109 ~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGF 140 (303)
T KOG2782|consen 109 IADTGLLDVGVDGILMDLGCSSMQVDNPERGF 140 (303)
T ss_pred HHHhCCCcCCcceEEeecCccccccCCccccc
Confidence 356788999998665543 45666655
No 365
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=79.24 E-value=1.4 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=18.2
Q ss_pred ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.....|.||.|+......-. .-.-.+..+.|++||.
T Consensus 23 e~~v~F~CPnCGe~~I~Rc~----~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 23 ETAVKFPCPNCGEVEIYRCA----KCRKLGNPYRCPKCGF 58 (61)
T ss_pred CceeEeeCCCCCceeeehhh----hHHHcCCceECCCcCc
Confidence 34455778888854332210 0011235667777764
No 366
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=77.82 E-value=7.4 Score=36.19 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHH----h--C-CCCEEEEEeC----CHHHHHHHHHHHHhcCCCCCCCEEEE
Q 023034 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK----S--G-LFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLV 235 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~----~--~-~~~~v~gvD~----s~~~l~~A~~~~~~~~g~~~~~i~~~ 235 (288)
..|.+.+.....-.|+|+|.|.|.-...|.+ + + |..++|||+. +...++.+.+++.+..........|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 4555666655667899999999975444443 3 1 4478999999 88888888888754310012334443
Q ss_pred E---ecCCCC-----CCCCCccceEEeccccccCCC
Q 023034 236 R---ADISRL-----PFASSSIDAVHAGAAIHCWSS 263 (288)
Q Consensus 236 ~---~d~~~l-----p~~~~sfD~V~~~~vl~h~~d 263 (288)
. .+++.+ ...++.+=+|-+...|||+.+
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~ 215 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLD 215 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcc
Confidence 3 233333 233344445556777898864
No 367
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.79 E-value=4.8 Score=30.82 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCeEEEEcCccc-hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCC-CCccceEEec
Q 023034 178 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G-~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~sfD~V~~~ 255 (288)
.++|+|||-|.= ..+..|+++|. .++++|+++. .| ...+.+++.|+.+.... -...|+|.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence 348999998864 36778888886 9999999885 11 24678899999865422 1346777763
No 368
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.71 E-value=13 Score=34.41 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=56.6
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----
Q 023034 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (288)
Q Consensus 172 ~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~----~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (288)
.|...++.+|||+.+..|.=+..+.+.... +.|++=|.+..-+......+... +..++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence 345678999999999999987777766432 37999999998888887777443 3455555555554433
Q ss_pred -----CCCCccceEEe
Q 023034 244 -----FASSSIDAVHA 254 (288)
Q Consensus 244 -----~~~~sfD~V~~ 254 (288)
.....||-|++
T Consensus 227 ~~~~~~~~~~fDrVLv 242 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLV 242 (375)
T ss_pred ccCchhhhhhcceeEE
Confidence 12346999987
No 369
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=77.59 E-value=1.1 Score=37.15 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=21.3
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.+.||.|+..-..+. +-......-.++|.+||.+++.
T Consensus 6 y~~Cp~Cg~eev~hE---Vik~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 6 YIECPSCGSEEVSHE---VIKERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEECCCCCcchhhHH---HHHhcCCceEEEccCCCcEeec
Confidence 467999994211000 0000112347899999999965
No 370
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.36 E-value=8.2 Score=35.74 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=38.1
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
....++.+||.+|+|. |..+..+++.....+++++|.++.+++.+++.
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3445688999999987 88888887774323699999999999988874
No 371
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=77.32 E-value=1.4 Score=41.19 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=26.3
Q ss_pred ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCC
Q 023034 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
+....=.||.|+..+...+ .+.++|+.|+..+....
T Consensus 346 ~~~~~p~Cp~Cg~~m~S~G----------~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 346 YERVNPVCPRCGGRMKSAG----------RNGFRCKKCGTRARETL 381 (421)
T ss_pred eEEcCCCCCccCCchhhcC----------CCCcccccccccCCccc
Confidence 3444446999999887644 23899999998877654
No 372
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=77.17 E-value=7.7 Score=37.55 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=54.5
Q ss_pred CeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEe
Q 023034 179 GNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (288)
Q Consensus 179 ~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 254 (288)
.+|+-+|.|.|.+.....+. .-..+++++|-+++++-..+.+--+. ...+++++-.|...++-+..+.|++++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~---W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC---WDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh---hcCeeEEEeccccccCCchhhccchHH
Confidence 45788899999987665443 22368999999999887776532221 357899999999998855688898876
No 373
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.09 E-value=1.3 Score=32.97 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=19.1
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
..||+|+..+... .++|++|+..-
T Consensus 7 ~~cPvcg~~~iVT-------------eL~c~~~etTV 30 (122)
T COG3877 7 NRCPVCGRKLIVT-------------ELKCSNCETTV 30 (122)
T ss_pred CCCCcccccceeE-------------EEecCCCCceE
Confidence 5699999988764 59999998643
No 374
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=76.97 E-value=1.9 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.581 Sum_probs=17.0
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
+.|..|+...... ....++|+.||..
T Consensus 1 Y~C~~Cg~~~~~~----------~~~~irC~~CG~R 26 (32)
T PF03604_consen 1 YICGECGAEVELK----------PGDPIRCPECGHR 26 (32)
T ss_dssp EBESSSSSSE-BS----------TSSTSSBSSSS-S
T ss_pred CCCCcCCCeeEcC----------CCCcEECCcCCCe
Confidence 3588898865543 2356899999864
No 375
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=76.97 E-value=1.6 Score=36.22 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=25.5
Q ss_pred cccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 64 ~~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
+...-.-.-.|+.|+.+|... ...+.|++|+..-.
T Consensus 142 ~~dlGVI~A~CsrC~~~L~~~-----------~~~l~Cp~Cg~tEk 176 (188)
T COG1096 142 GNDLGVIYARCSRCRAPLVKK-----------GNMLKCPNCGNTEK 176 (188)
T ss_pred CCcceEEEEEccCCCcceEEc-----------CcEEECCCCCCEEe
Confidence 333334456799999999874 36899999987644
No 376
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=75.94 E-value=3.1 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=17.7
Q ss_pred eCCCCCC--CCcccCCCCCccccccCCceecCCCCc
Q 023034 73 ACPICYK--PLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 73 ~CP~C~~--~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.||.|++ .+...+ .-..+.+.|.+|+.
T Consensus 5 pCP~CGG~DrFr~~d-------~~g~G~~~C~~Cg~ 33 (37)
T smart00778 5 PCPNCGGSDRFRFDD-------KDGRGTWFCSVCGA 33 (37)
T ss_pred CCCCCCCcccccccc-------CCCCcCEEeCCCCC
Confidence 4999998 344321 12347899999974
No 377
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=75.58 E-value=1 Score=37.56 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCceeCCCCCCCCcccCCC-CC-ccccccCCceecCCCCcccc
Q 023034 69 KNVLACPICYKPLTWIGDS-SL-SIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 69 l~~l~CP~C~~~l~~~~~~-~~-~~~~i~~~~l~C~~C~~~~~ 109 (288)
...+-||+|++.|...... .+ -.+.+....+.|.+||..+.
T Consensus 12 ~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~ 54 (201)
T COG1779 12 ETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRST 54 (201)
T ss_pred eeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCccc
Confidence 3446699999965433211 11 13344556789999986554
No 378
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=75.57 E-value=1.1 Score=28.32 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=23.9
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCC--CCcccccCCC
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVGT 113 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~--C~~~~~~~~g 113 (288)
.||.|+.+......... ......-+..|.+ ||+.+.....
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~~ 42 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANLE 42 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEEE
Confidence 49999996543321111 2223445778988 9988875443
No 379
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=75.45 E-value=2 Score=33.24 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=22.4
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
...||.|+..+-.- ......|+.||..|...
T Consensus 9 Kr~Cp~cg~kFYDL----------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDL----------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCcccccc----------CCCCccCCCcCCccCcc
Confidence 35699999976432 23578999999887653
No 380
>PRK12495 hypothetical protein; Provisional
Probab=75.21 E-value=2 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=24.7
Q ss_pred cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.+..+.||.|+.+|... .+..+|+.|+..+-.
T Consensus 39 tmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence 34456699999999843 478999999987654
No 381
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.13 E-value=11 Score=33.26 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
.++..-+|+|.-.|.++-.+.+++. .|+++|.-+ |.+..-. ...++....|...........|-.+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4588999999999999999999987 999999865 3222211 457777888877654344567766664
Q ss_pred cc
Q 023034 256 AA 257 (288)
Q Consensus 256 ~v 257 (288)
.|
T Consensus 278 mV 279 (358)
T COG2933 278 MV 279 (358)
T ss_pred hh
Confidence 43
No 382
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=74.90 E-value=10 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccceEEec
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDY--SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 255 (288)
=..|+|..+|.|.|+.+|.+..- -|.-+=+ .++.+....++ |. +-.++.=.+.++.-+.+||+|++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~V--WVMNVVP~~~~ntL~vIydR-----GL----IG~yhDWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPV--WVMNVVPVSGPNTLPVIYDR-----GL----IGVYHDWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeeecccccHHHHHhccCCc--eEEEecccCCCCcchhhhhc-----cc----chhccchhhccCCCCcchhheehh
Confidence 34699999999999999987631 2222222 22233333332 11 111111123456667899999999
Q ss_pred cccccCCCc
Q 023034 256 AAIHCWSSP 264 (288)
Q Consensus 256 ~vl~h~~d~ 264 (288)
.++.+..+.
T Consensus 435 ~lfs~~~~r 443 (506)
T PF03141_consen 435 GLFSLYKDR 443 (506)
T ss_pred hhhhhhccc
Confidence 999887654
No 383
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=74.88 E-value=10 Score=34.57 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=53.8
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC---CccceEEe
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS---SSIDAVHA 254 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~---~sfD~V~~ 254 (288)
..+++|+-||-|.+..-+...|. --+.++|+++..++.-+.+. ....+...|+..+.... ..+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEe
Confidence 35799999999999999999885 46789999998888777763 22445667776543211 17899998
Q ss_pred cccccc
Q 023034 255 GAAIHC 260 (288)
Q Consensus 255 ~~vl~h 260 (288)
..--+.
T Consensus 74 GpPCQ~ 79 (328)
T COG0270 74 GPPCQD 79 (328)
T ss_pred CCCCcc
Confidence 654443
No 384
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=74.50 E-value=2.5 Score=27.46 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=19.7
Q ss_pred eeCCCCCCCCc-ccCCCCCccccccCCceecCCCCccccc
Q 023034 72 LACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 72 l~CP~C~~~l~-~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
..||.|++.=. .... ..+....+.+.|..|+...+.
T Consensus 2 kPCPfCGg~~~~~~~~---~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRG---FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEec---cCCCCCEEEEECCCCCCCccc
Confidence 45999999322 2100 011122345589999986543
No 385
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=74.38 E-value=0.89 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.3
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
.||.|+..|..... ..-..-.|++|+-...
T Consensus 1 ~CP~C~~~l~~~~~-------~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-------GDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEE-------CCEEEEECCCCCeEEc
Confidence 39999997765431 1223557999985544
No 386
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=74.33 E-value=2.3 Score=28.30 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=7.4
Q ss_pred CCceeCCCCCCC
Q 023034 69 KNVLACPICYKP 80 (288)
Q Consensus 69 l~~l~CP~C~~~ 80 (288)
...|.||.|+..
T Consensus 23 ~~~F~CPnCG~~ 34 (59)
T PRK14890 23 AVKFLCPNCGEV 34 (59)
T ss_pred cCEeeCCCCCCe
Confidence 345667777665
No 387
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=73.94 E-value=1.7 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.326 Sum_probs=22.7
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.|.||.|+......- .-.-....+.+.|..||..+.-
T Consensus 22 ~FtCp~Cghe~vs~c---tvkk~~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 22 TFTCPRCGHEKVSSC---TVKKTVNIGTAVCGNCGLSFEC 58 (104)
T ss_pred eEecCccCCeeeeEE---EEEecCceeEEEcccCcceEEE
Confidence 578999999543310 0001123467899999987653
No 388
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=73.37 E-value=2.5 Score=26.99 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=17.8
Q ss_pred eeCCCCCCC--CcccCCCCCccccccCCceecCCCCccc
Q 023034 72 LACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 72 l~CP~C~~~--l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
-.||.|+.. +... .+.+.|..||...
T Consensus 20 ~~CPrCG~gvfmA~H-----------~dR~~CGkCgyTe 47 (51)
T COG1998 20 RFCPRCGPGVFMADH-----------KDRWACGKCGYTE 47 (51)
T ss_pred ccCCCCCCcchhhhc-----------CceeEeccccceE
Confidence 349999963 3332 3589999997653
No 389
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.98 E-value=32 Score=32.45 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=44.7
Q ss_pred CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccce
Q 023034 178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 251 (288)
Q Consensus 178 ~~~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~ 251 (288)
..+|+=+|+|. |. +...|.+.+. .++.+|.+++.++..++. ...+.++.+|+.+.. ..-..+|+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~--~v~vid~~~~~~~~~~~~--------~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGY--SVKLIERDPERAEELAEE--------LPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHH--------CCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 56789888864 33 2333334454 899999999988877764 235667888886431 22346777
Q ss_pred EEec
Q 023034 252 VHAG 255 (288)
Q Consensus 252 V~~~ 255 (288)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 7763
No 390
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=72.80 E-value=2.6 Score=31.42 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.1
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.||.|+..|... .+.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~-----------~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPK-----------NGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccC-----------CCeEECcCCCCcccc
Confidence 599999988642 358999999977654
No 391
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=72.61 E-value=2.1 Score=34.13 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=25.4
Q ss_pred eeCCCCCCCCcccCCCC-CccccccCCceecCCCCcccccCCC
Q 023034 72 LACPICYKPLTWIGDSS-LSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~-~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
+.||.|++.-+...+.. ...+......-.|.+||..|..-+-
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~ 43 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFER 43 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhe
Confidence 36999999544433221 1222233455689999998876443
No 392
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=72.55 E-value=2.7 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=20.5
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
.-.||.|+...... .....+.|+.||..
T Consensus 28 Sq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 28 SQTCPRCGHRNKKR---------RSGRVFTCPNCGFE 55 (69)
T ss_pred ccCccCcccccccc---------cccceEEcCCCCCE
Confidence 34599999966552 23578999999875
No 393
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.44 E-value=10 Score=30.40 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=23.9
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (288)
.+-|||+|-|+|+.--.+.+..++.+|+.+|-.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 467999999999999999999998999999964
No 394
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=72.44 E-value=2.4 Score=33.80 Aligned_cols=42 Identities=21% Similarity=0.469 Sum_probs=24.9
Q ss_pred eeCCCCCCCCcccCCCCC-ccccccCCceecCCCCcccccCCC
Q 023034 72 LACPICYKPLTWIGDSSL-SIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
+.||-|+..-+..-+... ..+..-...-.|.+|+..|..-+.
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyEr 43 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFER 43 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeee
Confidence 469999995444332211 122233345689999998875433
No 395
>COG4640 Predicted membrane protein [Function unknown]
Probab=72.26 E-value=1.9 Score=39.67 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=21.4
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
|+.||.||.+-.. +..+|++||+..-.++.
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~~s 30 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSRQS 30 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCchhh
Confidence 4679999965432 35669999987766543
No 396
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.18 E-value=11 Score=31.00 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=30.3
Q ss_pred eEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Q 023034 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (288)
Q Consensus 180 ~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~ 223 (288)
+|--||+|+ |. ++..++..|. +|+-+|.+++.++.+++++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHH
Confidence 356688886 53 5556666676 999999999999998887754
No 397
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=72.13 E-value=2.5 Score=30.80 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=21.6
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
..+.||.|+..-... ...+.|.|..|+..+.
T Consensus 35 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~A 65 (90)
T PTZ00255 35 AKYFCPFCGKHAVKR---------QAVGIWRCKGCKKTVA 65 (90)
T ss_pred CCccCCCCCCCceee---------eeeEEEEcCCCCCEEe
Confidence 346799999743222 2357999999998664
No 398
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=72.08 E-value=3.2 Score=27.07 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=21.4
Q ss_pred eeCCCCCCC--CcccCCCCCccccccCCceecCCCCcccccC
Q 023034 72 LACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 72 l~CP~C~~~--l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
+.||+|+.. +.... +-....-.++|+.|.+...+.
T Consensus 5 i~CP~CgnKTR~kir~-----DT~LkNfPlyCpKCK~EtlI~ 41 (55)
T PF14205_consen 5 ILCPICGNKTRLKIRE-----DTVLKNFPLYCPKCKQETLID 41 (55)
T ss_pred EECCCCCCccceeeec-----CceeccccccCCCCCceEEEE
Confidence 579999973 22211 111233468999999876653
No 399
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=72.00 E-value=2.2 Score=31.08 Aligned_cols=31 Identities=19% Similarity=0.514 Sum_probs=21.7
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
..+.||.|+..-... ...+.|.|..|+..+.
T Consensus 34 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~A 64 (91)
T TIGR00280 34 AKYVCPFCGKKTVKR---------GSTGIWTCRKCGAKFA 64 (91)
T ss_pred cCccCCCCCCCceEE---------EeeEEEEcCCCCCEEe
Confidence 346799999743222 2457999999998664
No 400
>PHA02998 RNA polymerase subunit; Provisional
Probab=71.45 E-value=2.3 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=24.2
Q ss_pred eeCCCCCCC-CcccCCCCCccccccCCceecCCCCccccc
Q 023034 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 72 l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
..||.|++. ......+..+.++-+...+.|..|++.+.-
T Consensus 144 v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkp 183 (195)
T PHA02998 144 TPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKP 183 (195)
T ss_pred CCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCC
Confidence 679999983 222222223334445567799999987654
No 401
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=71.16 E-value=1.6 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=25.5
Q ss_pred CCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCC
Q 023034 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 69 l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
+..++|+.|+.-|...+. ...-..+|+.|+.....+.
T Consensus 2 ~~eiRC~~CnklLa~~g~-------~~~leIKCpRC~tiN~~~a 38 (51)
T PF10122_consen 2 LKEIRCGHCNKLLAKAGE-------VIELEIKCPRCKTINHVRA 38 (51)
T ss_pred CcceeccchhHHHhhhcC-------ccEEEEECCCCCccceEec
Confidence 346889999997776321 2234689999998765543
No 402
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=70.92 E-value=3.6 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=21.8
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.++.||.|+....... .+. ......|+.||.++..
T Consensus 20 t~f~CP~Cge~~v~v~-----~~k-~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 20 KIFECPRCGKVSISVK-----IKK-NIAIITCGNCGLYTEF 54 (99)
T ss_pred cEeECCCCCCeEeeee-----cCC-CcceEECCCCCCccCE
Confidence 5688999996322110 000 2457899999987654
No 403
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=70.77 E-value=18 Score=25.50 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=19.7
Q ss_pred CCeEEEEcCccchHH--HHHHHhCCCCEEEEEeCC
Q 023034 178 GGNIIDASCGSGLFS--RIFAKSGLFSLVVALDYS 210 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~--~~l~~~~~~~~v~gvD~s 210 (288)
.++||-||+.+|+-+ +..+..+.++..+|+-..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 578999999998743 244444666788888764
No 404
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.77 E-value=6.5 Score=34.00 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=50.2
Q ss_pred CCeEEEEcCccchHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----
Q 023034 178 GGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~~~~---------~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (288)
-.+++|+.+..|.|+..+.++... ..+++||+-+ | .+...+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------------aPI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------------APIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------------CccCceEEeecccCCHhHHHHH
Confidence 357999999999999999887421 1399999855 1 24577888999998643
Q ss_pred ---CCCCccceEEeccc
Q 023034 244 ---FASSSIDAVHAGAA 257 (288)
Q Consensus 244 ---~~~~sfD~V~~~~v 257 (288)
|.....|+|+|..+
T Consensus 108 i~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGA 124 (294)
T ss_pred HHHhCCCCccEEEeCCC
Confidence 56678999999664
No 405
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=70.72 E-value=2.9 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred cCCceeCCCCCCC-CcccCCCCCccccccCCceecCCCCcccc
Q 023034 68 SKNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 68 ~l~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
..-.-.||.|+.+ +.....+-.+-++...-.+.|++|+..+.
T Consensus 71 a~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~ 113 (116)
T KOG2907|consen 71 AVIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT 113 (116)
T ss_pred cchhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence 3344569999983 33222222222223344678999987553
No 406
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.54 E-value=30 Score=29.53 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=47.6
Q ss_pred CeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----C
Q 023034 179 GNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----A 245 (288)
Q Consensus 179 ~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~-----~ 245 (288)
+++|-.|++.|. +...+.+.|. +|+.++.++..++...+.+... ..++.++..|+.+.. + .
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQF----PGQVLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 568888876652 4455556666 8999999887776666655443 246778888876531 0 1
Q ss_pred CCccceEEeccc
Q 023034 246 SSSIDAVHAGAA 257 (288)
Q Consensus 246 ~~sfD~V~~~~v 257 (288)
-+..|+|+.+..
T Consensus 76 ~~~id~lI~~ag 87 (252)
T PRK07677 76 FGRIDALINNAA 87 (252)
T ss_pred hCCccEEEECCC
Confidence 145788887654
No 407
>PRK05867 short chain dehydrogenase; Provisional
Probab=70.50 E-value=28 Score=29.70 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=52.5
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.++++|-.|++.|. +...|++.|. +|+.++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 36789999976653 4455566676 8999999988777666665544 245777888887532 0
Q ss_pred -CCCccceEEecccccc
Q 023034 245 -ASSSIDAVHAGAAIHC 260 (288)
Q Consensus 245 -~~~sfD~V~~~~vl~h 260 (288)
.-+..|+++.+..+..
T Consensus 82 ~~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 82 AELGGIDIAVCNAGIIT 98 (253)
T ss_pred HHhCCCCEEEECCCCCC
Confidence 1146899988766543
No 408
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=70.37 E-value=3.1 Score=27.53 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=23.3
Q ss_pred cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
..-++.|-.|+...... ..+.++|..||+.-
T Consensus 17 ~~miYiCgdC~~en~lk----------~~D~irCReCG~RI 47 (62)
T KOG3507|consen 17 ATMIYICGDCGQENTLK----------RGDVIRCRECGYRI 47 (62)
T ss_pred ccEEEEecccccccccc----------CCCcEehhhcchHH
Confidence 34568899999977654 25689999998643
No 409
>PRK06139 short chain dehydrogenase; Provisional
Probab=70.21 E-value=30 Score=31.41 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=51.7
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.+++||=.|++.|. +...+++.|. +|+.++.++..++...+.+... ...+.++..|+.+.. +
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~----g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRAL----GAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 36688888875542 3455666676 8999999998887776665554 346777788886531 0
Q ss_pred -CCCccceEEeccccc
Q 023034 245 -ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 -~~~sfD~V~~~~vl~ 259 (288)
..+.+|+++.+..+.
T Consensus 80 ~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 80 SFGGRIDVWVNNVGVG 95 (330)
T ss_pred HhcCCCCEEEECCCcC
Confidence 115689998876643
No 410
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=70.18 E-value=22 Score=30.46 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=46.0
Q ss_pred eEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccceEE
Q 023034 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH 253 (288)
Q Consensus 180 ~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~V~ 253 (288)
+++=+|||. |. .+..|.+.+. .|+.+|.+++.++..... ......+++|..+.. ..-..+|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~--------~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLAD--------ELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhh--------hcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 577889985 44 5667777777 999999999887763321 246778889887632 2335688888
Q ss_pred ec
Q 023034 254 AG 255 (288)
Q Consensus 254 ~~ 255 (288)
+.
T Consensus 72 a~ 73 (225)
T COG0569 72 AA 73 (225)
T ss_pred Ee
Confidence 73
No 411
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=70.09 E-value=3 Score=32.61 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=25.3
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCe
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~ 114 (288)
...||.|........ .........++|+.|++.+....|+
T Consensus 30 ~~~cP~C~s~~~~k~----g~~~~~~qRyrC~~C~~tf~~~~~~ 69 (129)
T COG3677 30 KVNCPRCKSSNVVKI----GGIRRGHQRYKCKSCGSTFTVETGS 69 (129)
T ss_pred cCcCCCCCccceeeE----CCccccccccccCCcCcceeeeccC
Confidence 366999999662111 0111125689999999988766554
No 412
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=69.72 E-value=7.6 Score=34.85 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred CccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEE----EEEecCCCCC-----CCCCccceE
Q 023034 186 CGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL----LVRADISRLP-----FASSSIDAV 252 (288)
Q Consensus 186 cG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~----~~~~d~~~lp-----~~~~sfD~V 252 (288)
.|+|.++..+.++ +| ..++.+|.++..+-..++.+.... ...++. .+.+|+.+-. |.....|+|
T Consensus 5 Ga~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~--~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiV 81 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRF--PDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIV 81 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEE
T ss_pred ccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcc--cccCcccccCceeecccCHHHHHHHHhhcCCCEE
Confidence 3667777766665 44 689999999999988888875330 123344 3477776532 556689999
Q ss_pred EeccccccCCCc
Q 023034 253 HAGAAIHCWSSP 264 (288)
Q Consensus 253 ~~~~vl~h~~d~ 264 (288)
+...++-|++--
T Consensus 82 fHaAA~KhVpl~ 93 (293)
T PF02719_consen 82 FHAAALKHVPLM 93 (293)
T ss_dssp EE------HHHH
T ss_pred EEChhcCCCChH
Confidence 999999998643
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=69.67 E-value=15 Score=27.28 Aligned_cols=60 Identities=20% Similarity=0.070 Sum_probs=38.5
Q ss_pred CccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccceEEec
Q 023034 186 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAG 255 (288)
Q Consensus 186 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~V~~~ 255 (288)
||.|.++..+++.. ....|+.+|.+++.++.+++. .+.++.+|..+.. ..-..+|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 45555655554431 113899999999998888763 3778999998642 223467777764
No 414
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=69.65 E-value=3.2 Score=37.51 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=21.3
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
...||.|+..-...+ ...+.+.|.+||.+-.
T Consensus 11 ~~~Cp~Cg~~~iv~d--------~~~Ge~vC~~CG~Vl~ 41 (310)
T PRK00423 11 KLVCPECGSDKLIYD--------YERGEIVCADCGLVIE 41 (310)
T ss_pred CCcCcCCCCCCeeEE--------CCCCeEeecccCCccc
Confidence 357999998422222 2468999999997543
No 415
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.17 E-value=49 Score=29.60 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (288)
.++++|=.|++.|. +...|++.|. +|+.+.-+++-++.+.+.+... ....++.++..|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTA--VPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 36788888877653 3445555665 9999999887776666655443 11246788899987642
Q ss_pred CCCCccceEEecccccc
Q 023034 244 FASSSIDAVHAGAAIHC 260 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h 260 (288)
-..+..|+++.+..+..
T Consensus 89 ~~~~~iD~li~nAG~~~ 105 (313)
T PRK05854 89 AEGRPIHLLINNAGVMT 105 (313)
T ss_pred HhCCCccEEEECCcccc
Confidence 11246899998766543
No 416
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=69.12 E-value=3.7 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=17.8
Q ss_pred ceeCCCCCCCCcccCCCCCccccccC--CceecCCCCc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAG--SSLQCNTCKK 106 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~--~~l~C~~C~~ 106 (288)
+..||.||.+-...... ...... -.+.|..|+.
T Consensus 3 LkPCPFCG~~~~~~~~~---~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFCGSADVLIRQD---EGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCCCCcceEeecc---cCCCCCCEEEEEcCCCCC
Confidence 45699997643332211 000011 4578999987
No 417
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=69.09 E-value=3 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.628 Sum_probs=13.2
Q ss_pred eCCCCCCC--CcccCCCCCccccccCCceecCCCCc
Q 023034 73 ACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 73 ~CP~C~~~--l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.||.|++. +.... +....+.+.|.+|+.
T Consensus 5 pCP~CGG~DrFri~~------d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 5 PCPICGGKDRFRIFD------DKDGRGTWICRQCGG 34 (40)
T ss_dssp --TTTT-TTTEEEET------T----S-EEETTTTB
T ss_pred CCCCCcCccccccCc------CcccCCCEECCCCCC
Confidence 49999984 33111 112458999999943
No 418
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.08 E-value=2.9 Score=32.17 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCceeCCCCCCCCcccCCC--CCccccccCCceecCCCCcccccCC
Q 023034 69 KNVLACPICYKPLTWIGDS--SLSIESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 69 l~~l~CP~C~~~l~~~~~~--~~~~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
..+..||+|..++.-...- -...+.-.+-.-+|.+||..|+..+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3567899999865322100 0111112334558999999998743
No 419
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=68.97 E-value=2.6 Score=35.26 Aligned_cols=39 Identities=28% Similarity=0.528 Sum_probs=20.6
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
.+.||.|+......+....+.+.+....+.|++|+....
T Consensus 18 ~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~ 56 (188)
T PF08996_consen 18 KLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLS 56 (188)
T ss_dssp EEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--
T ss_pred EeECCCCCCCccccccccCCccccccCcCcCCCCCCcCC
Confidence 377999999766655433344555677899999987443
No 420
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.62 E-value=36 Score=28.96 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
++++|-.|++.|. +...+++.+. +|+.++-++.-++...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREA----GGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 6788888875542 3445555665 8999999987776666555444 356888889987532 0
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
..+..|+|+.+...
T Consensus 81 ~~g~id~li~~ag~ 94 (253)
T PRK06172 81 AYGRLDYAFNNAGI 94 (253)
T ss_pred HhCCCCEEEECCCC
Confidence 11457998887654
No 421
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=68.59 E-value=2.8 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=19.8
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
--+.|+.|+..+..... ..+.....|+.||.
T Consensus 4 Yey~C~~Cg~~fe~~~~------~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQS------ISEDDPVPCPECGS 34 (42)
T ss_pred EEEEeCCCCCEEEEEEE------cCCCCCCcCCCCCC
Confidence 35789999975433210 01246789999987
No 422
>PRK07035 short chain dehydrogenase; Provisional
Probab=68.53 E-value=35 Score=29.03 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
+++||=.|++.|. +...+.+.|. +|+.++.++..++...+.+... ..++.++..|+.+.. +
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAA----GGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678888877653 4455566666 9999999987776666655443 245677788876532 0
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
.-+..|+++.+...
T Consensus 82 ~~~~id~li~~ag~ 95 (252)
T PRK07035 82 RHGRLDILVNNAAA 95 (252)
T ss_pred HcCCCCEEEECCCc
Confidence 01358998876653
No 423
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.38 E-value=37 Score=28.94 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.++++|-.|++.|. +...+.+.+. +|+.++.+++.++...+.++.. ..++.++.+|+.+.. +
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAA----GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 47788888865432 3344555565 9999999987776665555444 345778888887532 0
Q ss_pred -CCCccceEEecccc
Q 023034 245 -ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 -~~~sfD~V~~~~vl 258 (288)
.-+..|.|+.+...
T Consensus 84 ~~~~~id~vi~~ag~ 98 (256)
T PRK06124 84 AEHGRLDILVNNVGA 98 (256)
T ss_pred HhcCCCCEEEECCCC
Confidence 11457888876554
No 424
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.37 E-value=26 Score=29.55 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHhhcCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCC
Q 023034 168 LMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (288)
Q Consensus 168 ~l~~~l~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (288)
.+...+....+.+||-+|.= +|.+...+.... .+|+.+|+.+.|-... ..++.|... +-+..
T Consensus 35 ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~--~~vtv~Di~p~~r~~l-----------p~~v~Fr~~----~~~~~ 97 (254)
T COG4017 35 AIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKA--DKVTVVDIHPFMRGFL-----------PNNVKFRNL----LKFIR 97 (254)
T ss_pred HhhhhhcccCcceEEEEEeeehhHHHHHHhccc--ceEEEecCCHHHHhcC-----------CCCccHhhh----cCCCC
Confidence 34444444567889999876 677766666554 3999999999763332 345555443 44557
Q ss_pred CccceEEeccccccCCCccc--cc--ceEEEEecCc
Q 023034 247 SSIDAVHAGAAIHCWSSPST--GV--GVFFQVTLII 278 (288)
Q Consensus 247 ~sfD~V~~~~vl~h~~d~~~--~l--G~lvi~t~~~ 278 (288)
+.+|+|+-.-.|.-+. |+- -+ +.|++-.+..
T Consensus 98 G~~DlivDlTGlGG~~-Pe~L~~fnp~vfiVEdP~g 132 (254)
T COG4017 98 GEVDLIVDLTGLGGIE-PEFLAKFNPKVFIVEDPKG 132 (254)
T ss_pred CceeEEEeccccCCCC-HHHHhccCCceEEEECCCC
Confidence 8899999877776552 221 22 8888877655
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.27 E-value=38 Score=28.82 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----------
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---------- 244 (288)
+++||=.|++.|. +...++++|. +|+.++.++.-++...+.+... ..++.++..|+.+...
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDL----GRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 5678888865542 3445566676 9999999988776666555443 3467888998865320
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
.-+..|+|+.+...
T Consensus 79 ~~g~~d~vi~~ag~ 92 (258)
T PRK07890 79 RFGRVDALVNNAFR 92 (258)
T ss_pred HcCCccEEEECCcc
Confidence 11467998887654
No 426
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=68.26 E-value=15 Score=30.26 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=51.9
Q ss_pred HHHHhhcCCCCCC-eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC--
Q 023034 167 ELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (288)
Q Consensus 167 ~~l~~~l~~~~~~-~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (288)
+.+.+.+...++. .|+.+|||-=.....+....+..+++-+|. +++++.-++.++..+.....+..++.+|+.+..
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence 3445555332344 899999998777777766543457888887 445555555555431000122456888987521
Q ss_pred -------CCCCccceEEeccccccCC
Q 023034 244 -------FASSSIDAVHAGAAIHCWS 262 (288)
Q Consensus 244 -------~~~~sfD~V~~~~vl~h~~ 262 (288)
+.....-++++-.++.+++
T Consensus 146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 146 DALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 3344555777777777765
No 427
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.98 E-value=0.86 Score=36.81 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=40.5
Q ss_pred CEEEEEecCCCCCCCCCccceEEeccccccCCCccccc------------ceEEEEecCcccHHHH
Q 023034 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV------------GVFFQVTLIIHVVEDL 284 (288)
Q Consensus 231 ~i~~~~~d~~~lp~~~~sfD~V~~~~vl~h~~d~~~~l------------G~lvi~t~~~~~l~el 284 (288)
.+++++-.....+|.+++.|+|++.+|++|+.-.+... |.+-++.+....+.++
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~ 95 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWL 95 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHH
Confidence 45555544556789999999999999999997644333 9999988876665554
No 428
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=67.87 E-value=3.1 Score=30.32 Aligned_cols=30 Identities=20% Similarity=0.620 Sum_probs=21.1
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
.+.||.|+..-... ...+.|.|..|+..+.
T Consensus 36 ~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~A 65 (90)
T PRK03976 36 KHVCPVCGRPKVKR---------VGTGIWECRKCGAKFA 65 (90)
T ss_pred CccCCCCCCCceEE---------EEEEEEEcCCCCCEEe
Confidence 46799998743222 2357899999998664
No 429
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=67.74 E-value=8.1 Score=35.95 Aligned_cols=93 Identities=8% Similarity=-0.016 Sum_probs=62.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-------hcCCCCCCCEEEEEec
Q 023034 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLVRAD 238 (288)
Q Consensus 166 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~-------~~~g~~~~~i~~~~~d 238 (288)
...+.+.+..++++...|+|.|-|......+..+....-+|+++...-.+.|..+.+ .. |.....+..+.++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~f-Gk~~~~~~~i~gs 259 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHF-GKKPNKIETIHGS 259 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHh-CCCcCceeecccc
Confidence 345566778888999999999999999888887655567888887655554443322 12 2224557777777
Q ss_pred CCCCCC---CCCccceEEeccccc
Q 023034 239 ISRLPF---ASSSIDAVHAGAAIH 259 (288)
Q Consensus 239 ~~~lp~---~~~sfD~V~~~~vl~ 259 (288)
+..-.+ -....++|+++++..
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccC
Confidence 765322 124578888887754
No 430
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.39 E-value=46 Score=28.05 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCeEEEEcCccchHH----HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CC---
Q 023034 178 GGNIIDASCGSGLFS----RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 245 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~----~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~--- 245 (288)
.+++|-.|+ +|.++ ..+.+++. +|+.++.++.-++...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRST----GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhC----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 457888885 44444 44445565 8999999987666555544433 356888899987643 11
Q ss_pred --CCccceEEeccccc
Q 023034 246 --SSSIDAVHAGAAIH 259 (288)
Q Consensus 246 --~~sfD~V~~~~vl~ 259 (288)
-+..|+++.+....
T Consensus 79 ~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 79 EQFGCPDVLINNAGMA 94 (241)
T ss_pred HHcCCCCEEEECCCcc
Confidence 13578988766543
No 431
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=66.94 E-value=4.1 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=15.4
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.+|++||...... ...+.|+.|+.
T Consensus 2 ~~C~~CGy~y~~~-----------~~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGE-----------EAPWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCC-----------cCCCcCcCCCC
Confidence 5688888743321 14578888875
No 432
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.60 E-value=37 Score=30.49 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----------
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (288)
.|..||==|.|.|. ++..+++++. .++-.|++....+...+.+++. ..+..+..|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~-----g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKI-----GEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhc-----CceeEEEecCCCHHHHHHHHHHHH
Confidence 57888988988874 5677778876 8999999999888888877765 27888888987642
Q ss_pred CCCCccceEEeccccccC
Q 023034 244 FASSSIDAVHAGAAIHCW 261 (288)
Q Consensus 244 ~~~~sfD~V~~~~vl~h~ 261 (288)
-+-+..|+++.+..+-+.
T Consensus 110 ~e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTG 127 (300)
T ss_pred HhcCCceEEEeccccccC
Confidence 233678999988776543
No 433
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=66.45 E-value=16 Score=35.44 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=36.1
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 175 ~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
..++.+|+-+|+|. |......++... +.|+++|.+++-++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc
Confidence 34689999999996 777766666532 4899999999999998874
No 434
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.40 E-value=11 Score=34.69 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=42.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEE---EeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVA---LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~g---vD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (288)
++.-++|+|||-|.++.+++.......++- +|-...-+..-++..... ...+.-++.|+++|.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~----~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKN----SLVIKRIRIDIEDLK 247 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccC----cchhheeEeeHHhcC
Confidence 346899999999999999998866556665 777665555444433222 244555667776653
No 435
>PF12773 DZR: Double zinc ribbon
Probab=66.30 E-value=4.9 Score=25.44 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=19.7
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
+...||.|+.+|... ....+.|++|+...
T Consensus 11 ~~~fC~~CG~~l~~~----------~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPP----------DQSKKICPNCGAEN 39 (50)
T ss_pred cccCChhhcCChhhc----------cCCCCCCcCCcCCC
Confidence 345699999888721 23467888888753
No 436
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=65.76 E-value=2.9 Score=36.10 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCceeCCCCCCC-CcccCCCCCccccccCCceecCCCCcccccC
Q 023034 69 KNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 69 l~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
..-..||.|+.. |..... .-+...+.|++|+..|-.+
T Consensus 29 ~~n~yCP~Cg~~~L~~f~N------N~PVaDF~C~~C~eeyELK 66 (254)
T PF06044_consen 29 AENMYCPNCGSKPLSKFEN------NRPVADFYCPNCNEEYELK 66 (254)
T ss_dssp HHH---TTT--SS-EE--------------EEE-TTT--EEEEE
T ss_pred HHCCcCCCCCChhHhhccC------CCccceeECCCCchHHhhh
Confidence 344669999995 765432 2345679999999887653
No 437
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.68 E-value=42 Score=28.73 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=51.4
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
++++|-.|++.|. +...|++.|. +|+.++.++..++...+.+... ....++.++..|+.+.. +
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARD--VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 6788988876542 4455566666 8999999988777766665441 01346778888987532 0
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
.-+..|+++.+....
T Consensus 83 ~~g~id~li~~ag~~ 97 (260)
T PRK07063 83 AFGPLDVLVNNAGIN 97 (260)
T ss_pred HhCCCcEEEECCCcC
Confidence 114688888876543
No 438
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.37 E-value=19 Score=32.68 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=36.3
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
.+..+|.++.-+|+|. |.....-++...-++++|+|++++-.+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3456799999999996 55444445543337999999999999999875
No 439
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=65.22 E-value=4.4 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=21.3
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
-.+.|-.|+..+... .....++|+.||+.-
T Consensus 5 ~~Y~C~~Cg~~~~~~---------~~~~~irCp~Cg~rI 34 (49)
T COG1996 5 MEYKCARCGREVELD---------QETRGIRCPYCGSRI 34 (49)
T ss_pred EEEEhhhcCCeeehh---------hccCceeCCCCCcEE
Confidence 357899999977432 135689999998643
No 440
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.15 E-value=29 Score=33.73 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHH
Q 023034 176 VLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 176 ~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~ 219 (288)
.++.+||-+|+|. |.....+++. |. .|+.+|.++..++.+++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 3578999999996 6666655555 54 89999999998888776
No 441
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=65.14 E-value=4.4 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=27.2
Q ss_pred cccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 64 ~~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
++.+..-...||.|+......+ .....+.|..||..-..+-|
T Consensus 12 ~p~s~Fl~VkCpdC~N~q~vFs--------hast~V~C~~CG~~l~~PTG 53 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQVVFS--------HASTVVTCLICGTTLAEPTG 53 (67)
T ss_pred CCCceEEEEECCCCCCEEEEec--------cCceEEEecccccEEEecCC
Confidence 3444444567999999543322 24568999999987665443
No 442
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=65.11 E-value=25 Score=32.30 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=41.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 023034 167 ELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (288)
Q Consensus 167 ~~l~~~l~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~ 220 (288)
-...+-.+..++..|.-+|||. |.....-++.....+++++|+++.-++.|++.
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 3445555667899999999995 66655555553336999999999999999985
No 443
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=64.84 E-value=2 Score=30.68 Aligned_cols=39 Identities=18% Similarity=0.470 Sum_probs=16.3
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
..|.||.|+..-...-. . ......+.+.|..|+..|...
T Consensus 21 ~~F~CPfC~~~~sV~v~--i-dkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 21 KVFDCPFCNHEKSVSVK--I-DKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp S----TTT--SS-EEEE--E-ETTTTEEEEEESSS--EEEEE
T ss_pred ceEcCCcCCCCCeEEEE--E-EccCCEEEEEecCCCCeEEEc
Confidence 56889999964322100 0 001234688999999877544
No 444
>PRK09291 short chain dehydrogenase; Provisional
Probab=64.82 E-value=46 Score=28.29 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=46.1
Q ss_pred CeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccce
Q 023034 179 GNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 251 (288)
Q Consensus 179 ~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~ 251 (288)
++||-.|++.|. +...|.+.|. +|++++.++..++..++..... ..++.++.+|+.+.. ......|+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR----GLALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 468888875432 2344455565 8999998877665555544433 345778888887532 11236898
Q ss_pred EEecccc
Q 023034 252 VHAGAAI 258 (288)
Q Consensus 252 V~~~~vl 258 (288)
|+.+...
T Consensus 77 vi~~ag~ 83 (257)
T PRK09291 77 LLNNAGI 83 (257)
T ss_pred EEECCCc
Confidence 8886553
No 445
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=64.62 E-value=3.8 Score=28.53 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=23.0
Q ss_pred ceeCCCCCC--CCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 71 VLACPICYK--PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 71 ~l~CP~C~~--~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
--.||.|+. .|..... -......|-.||+....+..
T Consensus 8 Ga~CP~C~~~D~i~~~~e-------~~ve~vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 8 GAVCPKCQAMDTIMMWRE-------NGVEYVECVECGYTERQPDQ 45 (71)
T ss_pred CccCCCCcCccEEEEEEe-------CCceEEEecCCCCeeccCCc
Confidence 356999998 3432210 12457899999887765544
No 446
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=64.44 E-value=4.6 Score=35.53 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=24.5
Q ss_pred ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
+....-.||.|+.++.... ......|+.|+..+..
T Consensus 95 w~~~~~fC~~CG~~~~~~~---------~~~~~~C~~c~~~~yp 129 (256)
T PRK00241 95 FYRSHRFCGYCGHPMHPSK---------TEWAMLCPHCRERYYP 129 (256)
T ss_pred HhhcCccccccCCCCeecC---------CceeEECCCCCCEECC
Confidence 3344557999999886542 3457889999876543
No 447
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.23 E-value=52 Score=28.47 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=51.0
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.++++|-.|++.|. +...|++.|. +|+.++.++.-++.+.+.+.... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 36678888877653 4556666676 89999999887776666554321 246778888887642 1
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11467888876654
No 448
>PRK05876 short chain dehydrogenase; Provisional
Probab=64.12 E-value=52 Score=28.72 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=49.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
++++|-.|++.|. +...|++.|. +|+.+|.++.-++...+.+... ..++.++..|+.+.. +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAE----GFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6678888876553 3445555666 8999999887776665555443 245778888887532 0
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
..+..|+++.+..+.
T Consensus 80 ~~g~id~li~nAg~~ 94 (275)
T PRK05876 80 LLGHVDVVFSNAGIV 94 (275)
T ss_pred HcCCCCEEEECCCcC
Confidence 114579988877654
No 449
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=64.04 E-value=6.7 Score=29.91 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=26.1
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
+..||.|++-|....+ ...+.+.|+.|+..+.+...
T Consensus 2 m~FCp~Cgsll~p~~~-------~~~~~l~C~kCgye~~~~~~ 37 (113)
T COG1594 2 MRFCPKCGSLLYPKKD-------DEGGKLVCRKCGYEEEASNK 37 (113)
T ss_pred ccccCCccCeeEEeEc-------CCCcEEECCCCCcchhcccc
Confidence 4569999997765321 12358999999998887754
No 450
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.99 E-value=50 Score=27.84 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=48.2
Q ss_pred CCCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---------
Q 023034 177 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~--------- 244 (288)
++.++|-.|++.| . +...+.+.+. +|+.+|.++.-++.+.+.+... ..++.++..|+.+...
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECGAL----GTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3678998886443 2 2334455565 8999999987776666555443 3467788888765310
Q ss_pred -CCCccceEEecccc
Q 023034 245 -ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 -~~~sfD~V~~~~vl 258 (288)
..+.+|+|+.+...
T Consensus 78 ~~~~~id~vi~~ag~ 92 (253)
T PRK08217 78 EDFGQLNGLINNAGI 92 (253)
T ss_pred HHcCCCCEEEECCCc
Confidence 01467998886653
No 451
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.72 E-value=17 Score=32.99 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHH
Q 023034 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 175 ~~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~ 219 (288)
..++.+||-+|+|. |.++..++++ ....+|+++|.++.-++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 35688999999875 6666565554 222589999999988887764
No 452
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=63.71 E-value=4.4 Score=30.89 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=23.0
Q ss_pred cccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 64 ~~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
+....-..+.|+.|+...... ...+.||.||...
T Consensus 63 ~I~~vp~~~~C~~Cg~~~~~~-----------~~~~~CP~Cgs~~ 96 (113)
T PRK12380 63 HIVYKPAQAWCWDCSQVVEIH-----------QHDAQCPHCHGER 96 (113)
T ss_pred EEEeeCcEEEcccCCCEEecC-----------CcCccCcCCCCCC
Confidence 445555678899999755432 2356699999654
No 453
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=63.43 E-value=6.1 Score=22.72 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=20.7
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
+.|..|+..|.... ....++|..|+..
T Consensus 2 ~~C~~C~t~L~yP~---------gA~~vrCs~C~~v 28 (31)
T TIGR01053 2 VVCGGCRTLLMYPR---------GASSVRCALCQTV 28 (31)
T ss_pred cCcCCCCcEeecCC---------CCCeEECCCCCeE
Confidence 46999999887653 3568999999864
No 454
>PRK07478 short chain dehydrogenase; Provisional
Probab=63.42 E-value=53 Score=27.98 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=50.4
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
++++|=.|++.|. +...+++.|. +|+.++.++.-++...+.+... ..++.++.+|+.+.. +
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAE----GGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678888876542 4455566666 8999999988777766665554 346778888887532 1
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
.-+..|+++.+..+
T Consensus 80 ~~~~id~li~~ag~ 93 (254)
T PRK07478 80 RFGGLDIAFNNAGT 93 (254)
T ss_pred hcCCCCEEEECCCC
Confidence 11468988887654
No 455
>PRK07814 short chain dehydrogenase; Provisional
Probab=63.35 E-value=53 Score=28.27 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC-----C---
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----A--- 245 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~-----~--- 245 (288)
+++++|=.|.+.|. +...|.++|. +|++++.++..++...+.+... ..++.++..|+.+... .
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA----GRRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36788888865432 3344555565 9999999987766665555443 3467788888876431 0
Q ss_pred --CCccceEEeccc
Q 023034 246 --SSSIDAVHAGAA 257 (288)
Q Consensus 246 --~~sfD~V~~~~v 257 (288)
-+.+|+|+.+..
T Consensus 83 ~~~~~id~vi~~Ag 96 (263)
T PRK07814 83 EAFGRLDIVVNNVG 96 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 136788887654
No 456
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.31 E-value=57 Score=27.44 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
+.+||-.|++.|. +...+.+++. +|++++-++..+....+.+... ..++.++.+|+.+.. +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAA----GGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678877754332 3444555666 8999999876665555544443 345888888887532 1
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
..+.+|+|+......
T Consensus 80 ~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 80 DFGRLDILVANAGIF 94 (251)
T ss_pred HhCCCCEEEECCCCC
Confidence 013578888776543
No 457
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=63.20 E-value=42 Score=32.95 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=62.0
Q ss_pred CCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CCCCc
Q 023034 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS 248 (288)
Q Consensus 178 ~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~s 248 (288)
|++||--| |+|.++..+.++ +| .+++-+|.++..+...+..+... .+...+.++.+|..+.. +.+-+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~--~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREK--FPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhh--CCCcceEEEecccccHHHHHHHHhcCC
Confidence 66777666 556666655544 45 69999999999888777776653 12467889999998753 45567
Q ss_pred cceEEeccccccCCCc
Q 023034 249 IDAVHAGAAIHCWSSP 264 (288)
Q Consensus 249 fD~V~~~~vl~h~~d~ 264 (288)
.|+|+...++-|+|--
T Consensus 326 vd~VfHAAA~KHVPl~ 341 (588)
T COG1086 326 VDIVFHAAALKHVPLV 341 (588)
T ss_pred CceEEEhhhhccCcch
Confidence 9999999999999854
No 458
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=63.19 E-value=5.8 Score=24.38 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.6
Q ss_pred CceecCCCCccccc
Q 023034 97 SSLQCNTCKKTYSG 110 (288)
Q Consensus 97 ~~l~C~~C~~~~~~ 110 (288)
..+.|++||..+..
T Consensus 31 p~~~C~~CGE~~~~ 44 (46)
T TIGR03831 31 PALVCPQCGEEYLD 44 (46)
T ss_pred CccccccCCCEeeC
Confidence 45679999876543
No 459
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=62.81 E-value=26 Score=34.93 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred CCeEEEEcCcc-chHH-HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccce
Q 023034 178 GGNIIDASCGS-GLFS-RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 251 (288)
Q Consensus 178 ~~~VLDiGcG~-G~~~-~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~ 251 (288)
..+|+=+|+|. |... +.+.+.+. .++.+|.+++.++.+++. +...+.+|+.+.. ..-+..|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhc----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 45788888885 6543 44454555 899999999999988752 4568999998753 12246777
Q ss_pred EEec
Q 023034 252 VHAG 255 (288)
Q Consensus 252 V~~~ 255 (288)
+++.
T Consensus 468 vvv~ 471 (621)
T PRK03562 468 LINA 471 (621)
T ss_pred EEEE
Confidence 7753
No 460
>PRK08703 short chain dehydrogenase; Provisional
Probab=62.72 E-value=69 Score=26.92 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC---C------
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---F------ 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp---~------ 244 (288)
++++||-.|++.|. +...+++.+. +|+.++.++..++...+.+...+ ...+.++..|+.+.. +
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIVEAG---HPEPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHHHcC---CCCcceEEeeecccchHHHHHHHHH
Confidence 35789999965442 3344555565 89999999977766655554331 234455666664321 0
Q ss_pred ----CCCccceEEecccc
Q 023034 245 ----ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ----~~~sfD~V~~~~vl 258 (288)
-.+..|+|+.+...
T Consensus 80 i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 80 IAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHhCCCCCEEEEeccc
Confidence 01457888876653
No 461
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=62.70 E-value=4.6 Score=26.89 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=21.8
Q ss_pred CceeCCCCCC--CCcccCCCCCccccccCCceecCCCCcccccCC
Q 023034 70 NVLACPICYK--PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (288)
Q Consensus 70 ~~l~CP~C~~--~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 112 (288)
.--+||.|+. .|..... -.-....|..||+.....+
T Consensus 8 AGA~CP~C~~~Dtl~~~~e-------~~~e~vECv~Cg~~~~~~~ 45 (59)
T TIGR02443 8 AGAVCPACSAQDTLAMWKE-------NNIELVECVECGYQEQQKD 45 (59)
T ss_pred ccccCCCCcCccEEEEEEe-------CCceEEEeccCCCccccCC
Confidence 3456999998 3332210 1235689999987665443
No 462
>PRK12829 short chain dehydrogenase; Provisional
Probab=62.47 E-value=54 Score=27.96 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CC--
Q 023034 176 VLGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA-- 245 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~-- 245 (288)
.++.++|-.|++.|. +...|.+++. +|++++-++..++...+... ..++.++.+|+.+.. +.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLP------GAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh------cCceEEEEccCCCHHHHHHHHHHH
Confidence 457789988876432 2334455565 89999998876655443321 125677888887532 11
Q ss_pred ---CCccceEEecccc
Q 023034 246 ---SSSIDAVHAGAAI 258 (288)
Q Consensus 246 ---~~sfD~V~~~~vl 258 (288)
.+.+|+|+.....
T Consensus 81 ~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 81 VERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1368998876553
No 463
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.43 E-value=54 Score=27.97 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----------
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---------- 244 (288)
+++||-.|++.|. +...+.+.+. +++.++.+...++...+.+... ..++.++..|+.+..-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999977653 3445555665 8999998887777665555443 2457778888875420
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
.-+.+|+++.+..+
T Consensus 85 ~~~~~d~li~~ag~ 98 (255)
T PRK06113 85 KLGKVDILVNNAGG 98 (255)
T ss_pred HcCCCCEEEECCCC
Confidence 11467888887654
No 464
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.21 E-value=50 Score=27.99 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----C
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----A 245 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----~ 245 (288)
++++|=.|++.|. +...+++.|. +|+.++.+++.++...+.+... ...+..+..|..+.. + .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSAL----TDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999988875 5566666776 8999999998887776665544 234556667765432 1 1
Q ss_pred -CC-ccceEEeccc
Q 023034 246 -SS-SIDAVHAGAA 257 (288)
Q Consensus 246 -~~-sfD~V~~~~v 257 (288)
-+ ..|+++.+..
T Consensus 79 ~~g~~iD~li~nag 92 (227)
T PRK08862 79 QFNRAPDVLVNNWT 92 (227)
T ss_pred HhCCCCCEEEECCc
Confidence 13 6888888764
No 465
>KOG3277 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.00 E-value=11 Score=30.33 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCCCCCcccccCCCCchhHHHHhh-hhhhcccccccccCCCCCcccc--ccccccC-CceeCCCCCCCCcccCCCCCccc
Q 023034 17 GRLGNSRRCSVKPNPSPIFIRKFV-AKIRASSTAFVETKPSEPSFVE--NEASTSK-NVLACPICYKPLTWIGDSSLSIE 92 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l-~~l~CP~C~~~l~~~~~~~~~~~ 92 (288)
+.+...++|++... |+.+.+.++ +..+.+.++.-+...+...... ......+ -.+.|-+|+..-...- +..
T Consensus 22 ~n~~~~a~~~~~~~-~~~l~r~r~a~~~~~s~s~se~~~~~s~t~l~~~~~~kp~m~l~yTCkvCntRs~kti----sk~ 96 (165)
T KOG3277|consen 22 SNKPEDARLLSESA-RSSLFRNRPAALGTGSRSPSEAAKTDSATVLTFFKVPKPRMQLAYTCKVCNTRSTKTI----SKQ 96 (165)
T ss_pred ccCccccccccCCc-chhhhhccccccccCcccccccCCCCcccccccccCCCcceEEEEEeeccCCcccccc----Chh
Confidence 34445566665543 344444333 3344554443333222222221 1122222 3478999998433211 000
Q ss_pred cccCC--ceecCCCCcccccCCC
Q 023034 93 SAAGS--SLQCNTCKKTYSGVGT 113 (288)
Q Consensus 93 ~i~~~--~l~C~~C~~~~~~~~g 113 (288)
.-+.+ .+.|+.|+-.+.+.+.
T Consensus 97 AY~~GvVivqC~gC~~~HliaDn 119 (165)
T KOG3277|consen 97 AYEKGVVIVQCPGCKNHHLIADN 119 (165)
T ss_pred hhhCceEEEECCCCccceeehhh
Confidence 01112 5689999988877654
No 466
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=61.99 E-value=13 Score=28.97 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=47.8
Q ss_pred cCCCCCCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCCCCCccc
Q 023034 173 LKPVLGGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (288)
Q Consensus 173 l~~~~~~~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~sfD 250 (288)
+..-.+.++|=||+|. |. ....+.+.+. .+++-+.-+.+-++...+.+. ...+.+. ++.++.-....+|
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~------~~~~~~~--~~~~~~~~~~~~D 77 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG------GVNIEAI--PLEDLEEALQEAD 77 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT------GCSEEEE--EGGGHCHHHHTES
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC------cccccee--eHHHHHHHHhhCC
Confidence 3344588999999984 33 4455666665 479999998876555554431 1234433 3344432235699
Q ss_pred eEEeccccccC
Q 023034 251 AVHAGAAIHCW 261 (288)
Q Consensus 251 ~V~~~~vl~h~ 261 (288)
+|+..-...+.
T Consensus 78 ivI~aT~~~~~ 88 (135)
T PF01488_consen 78 IVINATPSGMP 88 (135)
T ss_dssp EEEE-SSTTST
T ss_pred eEEEecCCCCc
Confidence 99987665544
No 467
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=61.93 E-value=5 Score=38.26 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=54.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC-------CCCCCCcc
Q 023034 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------LPFASSSI 249 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~-------lp~~~~sf 249 (288)
.+..+|-||-|.|.+...+....+...++++++++.|++.|++++.-.. ..+..+...|... ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 3667899999999999999888887899999999999999999875431 1233344444321 11245678
Q ss_pred ceEEe
Q 023034 250 DAVHA 254 (288)
Q Consensus 250 D~V~~ 254 (288)
|++..
T Consensus 372 dvl~~ 376 (482)
T KOG2352|consen 372 DVLMV 376 (482)
T ss_pred cEEEE
Confidence 98876
No 468
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.92 E-value=54 Score=28.99 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
+++||=.|++.|. +...+++.|. +|+.++.+++.++...+.+... ...+.++.+|+.+.. +
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRA----GGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678888875543 3344555565 9999999988776666555443 245778888887532 0
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
.-+..|+++.+....
T Consensus 114 ~~g~id~li~~AG~~ 128 (293)
T PRK05866 114 RIGGVDILINNAGRS 128 (293)
T ss_pred HcCCCCEEEECCCCC
Confidence 124689999876543
No 469
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.52 E-value=56 Score=27.84 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=49.3
Q ss_pred CCCeEEEEcCccchHHH----HHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C---
Q 023034 177 LGGNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~~~~----~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~--- 244 (288)
.+++||=.|.+ |.++. .+++.|. +|+.++.++..++...+.+... ..++.++..|+.+.. +
T Consensus 9 ~~k~vlItGa~-g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTGSS-QGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ----GLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEECCc-chHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CceEEEEEccCCCHHHHHHHHHHH
Confidence 36788988854 44443 4445565 8999999988776666655443 245778888887532 1
Q ss_pred --CCCccceEEeccccc
Q 023034 245 --ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 --~~~sfD~V~~~~vl~ 259 (288)
.-+..|+|+.+....
T Consensus 82 ~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 82 EAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 114578888876553
No 470
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=61.51 E-value=37 Score=29.84 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC----CCCCCC
Q 023034 176 VLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASS 247 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~ 247 (288)
..+...+|+|.|+-.-++.+.+ ++...+++-+|+|...++...+.+... .+...+.-+++|.+. +| ..+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~~ 153 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RGG 153 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CCC
Confidence 3477899999998765555544 444479999999999997766655443 133455566777652 33 222
Q ss_pred ccceEEeccccccC
Q 023034 248 SIDAVHAGAAIHCW 261 (288)
Q Consensus 248 sfD~V~~~~vl~h~ 261 (288)
+==.++....|..+
T Consensus 154 ~Rl~~flGStlGN~ 167 (321)
T COG4301 154 RRLFVFLGSTLGNL 167 (321)
T ss_pred eEEEEEecccccCC
Confidence 22233445556555
No 471
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=61.41 E-value=18 Score=35.92 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=41.9
Q ss_pred CeEEEEcCcc-chH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccceE
Q 023034 179 GNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV 252 (288)
Q Consensus 179 ~~VLDiGcG~-G~~-~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~V 252 (288)
..|+=+|+|. |.. .+.+.+.+. +++.+|.+++.++.+++. ....+.+|+.+.. ..-...|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4576666663 443 233444455 899999999999988752 4568899988643 122456776
Q ss_pred Ee
Q 023034 253 HA 254 (288)
Q Consensus 253 ~~ 254 (288)
++
T Consensus 469 v~ 470 (601)
T PRK03659 469 VI 470 (601)
T ss_pred EE
Confidence 66
No 472
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=60.91 E-value=7.7 Score=31.45 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=24.0
Q ss_pred cCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCccc
Q 023034 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (288)
Q Consensus 68 ~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 108 (288)
..-..+||.|+..+.... .+.+.|..|+...
T Consensus 31 ~~~Y~aC~~C~kkv~~~~----------~~~~~C~~C~~~~ 61 (166)
T cd04476 31 NWWYPACPGCNKKVVEEG----------NGTYRCEKCNKSV 61 (166)
T ss_pred CeEEccccccCcccEeCC----------CCcEECCCCCCcC
Confidence 455678999999886532 2689999999875
No 473
>PRK08643 acetoin reductase; Validated
Probab=60.90 E-value=58 Score=27.71 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=47.9
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
++++|=.|+..|. +...+++.+. +|+.++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKD----GGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4567777765442 3345555565 8999999887776666555443 346778888887642 1
Q ss_pred CCCccceEEecccc
Q 023034 245 ASSSIDAVHAGAAI 258 (288)
Q Consensus 245 ~~~sfD~V~~~~vl 258 (288)
..+..|+++.+...
T Consensus 76 ~~~~id~vi~~ag~ 89 (256)
T PRK08643 76 TFGDLNVVVNNAGV 89 (256)
T ss_pred HcCCCCEEEECCCC
Confidence 11457888876644
No 474
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=60.69 E-value=6.9 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=25.1
Q ss_pred ccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCC
Q 023034 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 113 (288)
+..-...||.|+......+ .....+.|..|+..-..+.|
T Consensus 7 S~F~~VkCp~C~n~q~vFs--------ha~t~V~C~~Cg~~L~~PtG 45 (59)
T PRK00415 7 SRFLKVKCPDCGNEQVVFS--------HASTVVRCLVCGKTLAEPTG 45 (59)
T ss_pred CeEEEEECCCCCCeEEEEe--------cCCcEEECcccCCCcccCCC
Confidence 3344467999999443222 13467899999987655443
No 475
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=60.66 E-value=5.3 Score=25.57 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=19.6
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
-.+.|+.|+......... .+.....|+.||..
T Consensus 4 Yey~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQKM------SDDPLATCPECGGE 35 (52)
T ss_pred EEEEeCCCCCEeEEEEec------CCCCCCCCCCCCCC
Confidence 357899999854332100 11356789999973
No 476
>PRK06194 hypothetical protein; Provisional
Probab=60.64 E-value=62 Score=28.12 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C-----
Q 023034 178 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~----- 244 (288)
+.++|=.|.+.| . +...|.+.|. +|+.+|.+...++...+.+... ..++.++.+|+.+.. +
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ----GAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567887775433 2 3444555565 8999999887766655544433 246778889987532 0
Q ss_pred CCCccceEEeccccc
Q 023034 245 ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~ 259 (288)
..+..|+|+.+..+.
T Consensus 80 ~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 80 RFGAVHLLFNNAGVG 94 (287)
T ss_pred HcCCCCEEEECCCCC
Confidence 013579998877654
No 477
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=60.52 E-value=62 Score=27.27 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CC----
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---- 245 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~---- 245 (288)
++++|-.|++.|. +...|.+.+. +|+.++.+....+...+.+... ..++.++.+|+.+.. +.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAK----GGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678888865432 3344555565 8999999987776665555443 356888888887532 00
Q ss_pred -CCccceEEecccc
Q 023034 246 -SSSIDAVHAGAAI 258 (288)
Q Consensus 246 -~~sfD~V~~~~vl 258 (288)
.+..|+|+.+...
T Consensus 77 ~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 77 ALGPVDVLVNNAGW 90 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1357877776653
No 478
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.41 E-value=35 Score=32.22 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHhhcCC-CCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHH
Q 023034 166 FELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 166 ~~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~l~~A~~ 219 (288)
++.+.+..+. .+|.+|+-+|+|. |......++. |. +|+.+|.++.-++.|++
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM 243 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh
Confidence 3444444332 4689999999996 7666555544 44 89999999988777765
No 479
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=60.41 E-value=10 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=17.0
Q ss_pred eeCCCCCCCC--cccCCCCCccccccCCceecCCCC
Q 023034 72 LACPICYKPL--TWIGDSSLSIESAAGSSLQCNTCK 105 (288)
Q Consensus 72 l~CP~C~~~l--~~~~~~~~~~~~i~~~~l~C~~C~ 105 (288)
+.||.|++.. ...+. +......++|..|+
T Consensus 6 v~CP~C~s~~~v~k~G~-----~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNGK-----SPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCCC-----CCCCCEeEecCcCC
Confidence 4699999854 33221 11123578888874
No 480
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=60.23 E-value=5.2 Score=35.44 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=22.6
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
.||.|+.++..... ...+.+.|+.|....+.
T Consensus 237 pC~~Cg~~I~~~~~-------~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 237 PCPRCGTPIEKIVV-------GGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCcCCCeeEEEEE-------CCCCcEECCCCcCCCCC
Confidence 59999998755321 23578999999876654
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.13 E-value=5.8 Score=33.85 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=10.0
Q ss_pred CCceecCCCCcccc
Q 023034 96 GSSLQCNTCKKTYS 109 (288)
Q Consensus 96 ~~~l~C~~C~~~~~ 109 (288)
...+.|++||....
T Consensus 46 Y~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 46 YEVWVCPHCGYAAF 59 (214)
T ss_pred eeEEECCCCCCccc
Confidence 45678999986544
No 482
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=60.13 E-value=5 Score=40.89 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=19.3
Q ss_pred eCCCCCCCCcccCCCCCccccccCCceecCCCCc
Q 023034 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (288)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 106 (288)
.||.|+..|... ++...|.+||.
T Consensus 726 ~Cp~Cg~~l~~~-----------~GC~~C~~CG~ 748 (752)
T PRK08665 726 ACPECGSILEHE-----------EGCVVCHSCGY 748 (752)
T ss_pred CCCCCCcccEEC-----------CCCCcCCCCCC
Confidence 599999888764 48899999985
No 483
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.04 E-value=63 Score=27.05 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l 242 (288)
+++||-.|++.|. +...+.+.|. +|++++-++.-++...+.+... .++.++.+|+.+.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~ 65 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSST 65 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCH
Confidence 6789999886432 3344445565 9999999987666554443322 3577888888753
No 484
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=59.89 E-value=6.5 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=23.4
Q ss_pred cccccCCceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccc
Q 023034 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (288)
Q Consensus 64 ~~~~~l~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 109 (288)
+.+..-..+.|+.|+....... ....+|+.||....
T Consensus 64 ~Ie~vp~~~~C~~Cg~~~~~~~----------~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 64 DIVDEKVELECKDCSHVFKPNA----------LDYGVCEKCHSKNV 99 (117)
T ss_pred EEEecCCEEEhhhCCCccccCC----------ccCCcCcCCCCCce
Confidence 3445556788999997554321 23456999997643
No 485
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=59.83 E-value=62 Score=27.79 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=52.0
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.++++|-.|++.|. +...+++.+. +|+.++.++.-++...+.+... ..++.++.+|+.+.. +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYREL----GIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 36688888877653 4455666666 8999999987777666665543 346788889987532 1
Q ss_pred -CCCccceEEeccccc
Q 023034 245 -ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 -~~~sfD~V~~~~vl~ 259 (288)
.-+..|+++.+..+.
T Consensus 83 ~~~~~id~li~~ag~~ 98 (265)
T PRK07097 83 KEVGVIDILVNNAGII 98 (265)
T ss_pred HhCCCCCEEEECCCCC
Confidence 114689998877653
No 486
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=59.78 E-value=7 Score=25.74 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=16.6
Q ss_pred CceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
++-.||.|+..-. .-..|++|| +|..+
T Consensus 25 ~l~~c~~cg~~~~--------------~H~vc~~cG-~y~~r 51 (56)
T PF01783_consen 25 NLVKCPNCGEPKL--------------PHRVCPSCG-YYKGR 51 (56)
T ss_dssp SEEESSSSSSEES--------------TTSBCTTTB-BSSSS
T ss_pred ceeeeccCCCEec--------------ccEeeCCCC-eECCE
Confidence 3456999997322 135688897 44443
No 487
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=59.68 E-value=3.2 Score=37.11 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=23.6
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
-..||.|+.-+...+ ...+...|+.|++.+..
T Consensus 26 ~~~c~~c~~~~~~~~--------l~~~~~vc~~c~~h~rl 57 (285)
T TIGR00515 26 WTKCPKCGQVLYTKE--------LERNLEVCPKCDHHMRM 57 (285)
T ss_pred eeECCCCcchhhHHH--------HHhhCCCCCCCCCcCcC
Confidence 456999999765433 34567899999988775
No 488
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.51 E-value=62 Score=27.73 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=50.2
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC---------C
Q 023034 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------A 245 (288)
Q Consensus 178 ~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---------~ 245 (288)
+.++|=.|++.|. +...++++|. +|++++.++.-++.....+ .. ..++.++..|+.+..- .
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARL-PY----PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH-hc----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 5678888876542 4455666676 8999999987776665544 22 3467888888876420 0
Q ss_pred CCccceEEecccccc
Q 023034 246 SSSIDAVHAGAAIHC 260 (288)
Q Consensus 246 ~~sfD~V~~~~vl~h 260 (288)
.+..|+|+.+....+
T Consensus 78 ~~~id~lv~~ag~~~ 92 (263)
T PRK09072 78 MGGINVLINNAGVNH 92 (263)
T ss_pred cCCCCEEEECCCCCC
Confidence 245788888765543
No 489
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.43 E-value=62 Score=27.53 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=49.7
Q ss_pred CCeEEEEcCccc---hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCCC----------
Q 023034 178 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------- 244 (288)
Q Consensus 178 ~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp~---------- 244 (288)
++++|=.|+..| .+...|++.+. +|+.++.++...+.+.+.+... ..++.++.+|+.+..-
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKA----GGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhc----CceEEEEECCCCCHHHHHHHHHHHHH
Confidence 567887776433 23445555666 8999999997776666665544 3457788899875421
Q ss_pred CCCccceEEecccccc
Q 023034 245 ASSSIDAVHAGAAIHC 260 (288)
Q Consensus 245 ~~~sfD~V~~~~vl~h 260 (288)
..+..|+|+.+....+
T Consensus 81 ~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 81 RFGSVDILVSNAGIQI 96 (262)
T ss_pred HcCCCCEEEECCccCC
Confidence 1145788887665543
No 490
>PRK08589 short chain dehydrogenase; Validated
Probab=59.21 E-value=72 Score=27.64 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----C----
Q 023034 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (288)
Q Consensus 177 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (288)
.++++|=.|++.|. +...|++.|. +|+.++.+ ..++...+.+... ..++.++..|+.+.. +
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIKSN----GGKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHHhc----CCeEEEEEeecCCHHHHHHHHHHHH
Confidence 36688888876653 3455666666 99999998 4444444444433 245778888887532 0
Q ss_pred -CCCccceEEeccccc
Q 023034 245 -ASSSIDAVHAGAAIH 259 (288)
Q Consensus 245 -~~~sfD~V~~~~vl~ 259 (288)
.-+..|+++.+..+.
T Consensus 78 ~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 78 EQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHcCCcCEEEECCCCC
Confidence 124679888877653
No 491
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=58.63 E-value=7.1 Score=31.91 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=18.9
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcc
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 107 (288)
..+||+||..... . ..-.||.|++.
T Consensus 134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-E-----------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence 7899999986654 2 35689999863
No 492
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.61 E-value=4.9 Score=38.41 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCC----CCCCCccc
Q 023034 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSID 250 (288)
Q Consensus 176 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~sfD 250 (288)
.++.+|||.=+++|.-+..+++..+ -.+|++-|.+++.++..+++.+.. .....+.-...|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--GVEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--CchhhcccccchHHHHHHhccccccccc
Confidence 3467899999999998777776643 358999999999999999988765 2334455666776543 33457899
Q ss_pred eEEe
Q 023034 251 AVHA 254 (288)
Q Consensus 251 ~V~~ 254 (288)
+|-.
T Consensus 186 vIDL 189 (525)
T KOG1253|consen 186 VIDL 189 (525)
T ss_pred eEec
Confidence 9875
No 493
>PRK05978 hypothetical protein; Provisional
Probab=58.58 E-value=7.5 Score=31.17 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=19.8
Q ss_pred ceeCCCCCC-CCcccCCCCCccccccCCceecCCCCcccccC
Q 023034 71 VLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (288)
Q Consensus 71 ~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 111 (288)
..+||.|+. .|.. + --.-.-.|+.||.-|...
T Consensus 33 ~grCP~CG~G~LF~-g--------~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGEGKLFR-A--------FLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCCCcccc-c--------ccccCCCccccCCccccC
Confidence 356999998 4432 1 111234799999876543
No 494
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.48 E-value=28 Score=34.15 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=43.1
Q ss_pred CeEEEEcCcc-chH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC----CCCCccceE
Q 023034 179 GNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV 252 (288)
Q Consensus 179 ~~VLDiGcG~-G~~-~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~sfD~V 252 (288)
..|+=+|+|. |.. .+.+.+++. +++.+|.+++.++.+++ .....+.+|+.+.. ..-+.+|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~~~~----------~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDELRE----------RGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------CCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 5677777774 443 344444555 89999999999888875 25678999988642 223467766
Q ss_pred Ee
Q 023034 253 HA 254 (288)
Q Consensus 253 ~~ 254 (288)
+.
T Consensus 486 iv 487 (558)
T PRK10669 486 LL 487 (558)
T ss_pred EE
Confidence 54
No 495
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=58.32 E-value=21 Score=29.66 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=24.9
Q ss_pred eEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 023034 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (288)
Q Consensus 180 ~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~ 219 (288)
+|--||.|. |. ++..+++.|. +|+|+|+++.-++..++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhh
Confidence 456677775 53 5677777887 99999999987776653
No 496
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=58.25 E-value=3.9 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.2
Q ss_pred eeCCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
..||.|+.-+...+ .+.+...|+.|++++.+
T Consensus 29 ~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri 59 (294)
T COG0777 29 TKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRI 59 (294)
T ss_pred eECCCccceeeHHH--------HHhhhhcccccCccccc
Confidence 34999999765544 55678899999988776
No 497
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=58.25 E-value=5 Score=36.41 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=21.8
Q ss_pred CCCCCCCCcccCCCCCccccccCCceecCCCCccccc
Q 023034 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (288)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 110 (288)
||+||....-.. .+.+.|.+|.-||..
T Consensus 18 CPVCGDkVSGYH----------YGLLTCESCKGFFKR 44 (475)
T KOG4218|consen 18 CPVCGDKVSGYH----------YGLLTCESCKGFFKR 44 (475)
T ss_pred cccccCccccce----------eeeeehhhhhhHHHH
Confidence 999999776543 578999999887764
No 498
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=58.21 E-value=5.9 Score=31.21 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred ccCCceeCCCCCCCCcccCCC-------CCccccc---cCCceecCCCCccc
Q 023034 67 TSKNVLACPICYKPLTWIGDS-------SLSIESA---AGSSLQCNTCKKTY 108 (288)
Q Consensus 67 ~~l~~l~CP~C~~~l~~~~~~-------~~~~~~i---~~~~l~C~~C~~~~ 108 (288)
..-..+.|+.|+......+.+ ......+ ....+.|+.||...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~ 117 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRD 117 (135)
T ss_pred ecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCC
Confidence 334668899999744332100 0000001 13457899999764
No 499
>PHA02768 hypothetical protein; Provisional
Probab=58.18 E-value=3.4 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=25.0
Q ss_pred ceeCCCCCCCCcccCCCCCccccccCCceecCCCCcccccCCCeee
Q 023034 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116 (288)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~ 116 (288)
-+.||.|+..+...+.- .....+-.....|..|++.+.....+..
T Consensus 5 ~y~C~~CGK~Fs~~~~L-~~H~r~H~k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSM-ITHLRKHNTNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHH-HHHHHhcCCcccCCcccceecccceeEE
Confidence 36799999865433100 0000011146789999998775555443
No 500
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=58.05 E-value=40 Score=30.73 Aligned_cols=80 Identities=24% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCeEEEEcC-c-cch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCCC-----CCCCcc
Q 023034 178 GGNIIDASC-G-SGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSSI 249 (288)
Q Consensus 178 ~~~VLDiGc-G-~G~-~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~sf 249 (288)
+.+||-.|. | -|. ....|.+.+. .|+++|.=-+....+-++++.. ......+.|+++|+.+.+ |....|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l-~~~~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQL-LGEGKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHh-cCCCCceEEEEeccCCHHHHHHHHhhcCC
Confidence 356777752 2 133 3466777787 8999997665554444444443 122478999999998765 566678
Q ss_pred ceEEecccccc
Q 023034 250 DAVHAGAAIHC 260 (288)
Q Consensus 250 D~V~~~~vl~h 260 (288)
|.|+...++--
T Consensus 79 d~V~Hfa~~~~ 89 (343)
T KOG1371|consen 79 DAVMHFAALAA 89 (343)
T ss_pred ceEEeehhhhc
Confidence 88887766544
Done!