BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023036
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 34/255 (13%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G ++E+E A YDRQIR+WG +AQ+RL S +L+ G+KG AE KN++LAGV LT++D
Sbjct: 8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
VT E A FLI G+ AE + ++ NPMV V V+ D+ F+
Sbjct: 68 HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124
Query: 123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
+FD +++ C K S + F+T D G F +L H++ ++K +
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182
Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
ET ++ ++ + +EA+ V W +A ++ + YF
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242
Query: 214 LRVLEQFEEAEGRSP 228
L+VL +F +GR P
Sbjct: 243 LQVLLKFRTDKGRDP 257
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
LY RQ+ V G +A +++S+S++L+ G KG E KN+ LAGV S+TL D + E
Sbjct: 7 GLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDL 66
Query: 72 SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXX 131
S+ + + D+ G A+V L + N V VSV + L E+ F
Sbjct: 67 SSQYFLTEDDI---GVPRAKVTVSKLAELNQYVPVSV----VDELSTEYLKNFKCVVVTE 119
Query: 132 XXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
IN+ K +A+ D R G IF D
Sbjct: 120 TSLTKQLEINDFTHK--NHIAYIAADSRGLFGSIFCDF 155
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 14 YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTE 68
YD QI V+G++ Q +++ + G E KN + GV G +++ D + +
Sbjct: 399 YDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEK 458
Query: 69 EAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP 102
+ FL P + GK +E ++ NP
Sbjct: 459 SNLNRQFLFRPRDV---GKLKSECASTAVSIMNP 489
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 7 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 64 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 5 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 62 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 116
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 8 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 64
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 65 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 119
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 5 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 62 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 116
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
G+ L EQ+ YDRQ+R+WG Q L +H+ + T E KN+VL G+GS T++D
Sbjct: 7 GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
V+ E NF + + GK AE + L++ N V S VE+ + LD +
Sbjct: 64 GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
E + +LY RQ+ V G +A ++ S++L+ G+KG E KN+VLAGV S+T+ D V
Sbjct: 4 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 68 EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDX 126
S F + ++++ G+ +V L + N V V+V L SLD +F
Sbjct: 64 LADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNV----LDSLDDVTQLSQFQV 116
Query: 127 XXXXXXXXXXXXL-INEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
+ INE C S + F + + R G FVDL
Sbjct: 117 VVATDTVSLEDKVKINEFCH--SSGIRFISSETRGLFGNTFVDL 158
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 4 EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGS-----L 58
E+ T+ + YD QI V+G D Q++++ S + + G E KN L G+GS +
Sbjct: 398 EKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYI 457
Query: 59 TLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR 105
+ D+ + + + FL P + GK +EV +++ NP ++
Sbjct: 458 VVTDNDSIEKSNLNRQFLFRPKD---VGKNKSEVAAEAVCAMNPDLK 501
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5 ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
EL++QE Y+RQI R + D Q L S +L+ G+ G + + AGVG+LTL+D
Sbjct: 3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107
V+ L D V G+ E D+L NP + ++
Sbjct: 63 FDTVSLSNLQRQTL-HSDATV--GQPKVESARDALTRINPHIAIT 104
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 130
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 32 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 88
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 89 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 127
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 64 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 120
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 121 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 159
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 130
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 130
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 91
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 92 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 130
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 45 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 101
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 102 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 140
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88
++ +LV G G E KN+VL G + L+D + + FL + + G++
Sbjct: 17 VAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRS 73
Query: 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
A+V +S+ F P + + + D EF+ +F
Sbjct: 74 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 111
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85
Q L +LV G G E KN+ L+G + ++D + + FL P +
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI--- 462
Query: 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF 124
G+ AEV + L D P V + + FY +F
Sbjct: 463 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF 501
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88
++ +LV G G E KN+VL G + L+D + + FL + + G++
Sbjct: 35 VAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRS 91
Query: 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
A+V +S+ F P + + + D EF+ +F
Sbjct: 92 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 129
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88
++ +LV G G E KN+VL G + L+D + + FL + + G++
Sbjct: 15 VAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF---QKKHVGRS 71
Query: 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDG--EFYDKF 124
A+V +S+ F P + + + D EF+ +F
Sbjct: 72 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF 109
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
Y RQI + D Q++L S +L+ G+ G + AGVG+L L DD
Sbjct: 9 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
Y RQI + D Q++L S +L+ G+ G + AGVG+L L DD
Sbjct: 11 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,761,025
Number of Sequences: 62578
Number of extensions: 284710
Number of successful extensions: 784
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 30
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)