Query 023036
Match_columns 288
No_of_seqs 254 out of 2018
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2014 SMT3/SUMO-activating c 100.0 3.7E-59 8.1E-64 411.3 18.1 269 1-274 1-307 (331)
2 KOG2012 Ubiquitin activating e 100.0 5.1E-54 1.1E-58 417.2 21.8 259 8-275 14-380 (1013)
3 TIGR01408 Ube1 ubiquitin-activ 100.0 1.1E-52 2.5E-57 431.5 26.7 259 9-276 2-371 (1008)
4 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.1E-50 1.1E-54 380.0 22.7 230 12-248 1-242 (425)
5 cd01491 Ube1_repeat1 Ubiquitin 100.0 3E-46 6.4E-51 337.3 18.4 161 13-181 1-162 (286)
6 cd01492 Aos1_SUMO Ubiquitin ac 100.0 5.7E-44 1.2E-48 308.2 18.5 153 12-169 2-154 (197)
7 KOG2016 NEDD8-activating compl 100.0 4.1E-44 8.8E-49 329.0 15.7 230 9-245 5-246 (523)
8 cd01485 E1-1_like Ubiquitin ac 100.0 1E-42 2.2E-47 300.7 17.4 152 13-169 1-157 (198)
9 PRK05690 molybdopterin biosynt 100.0 2.5E-39 5.4E-44 288.2 17.1 159 5-168 4-165 (245)
10 PRK08223 hypothetical protein; 100.0 5.9E-39 1.3E-43 288.7 19.2 156 10-170 6-164 (287)
11 PRK08328 hypothetical protein; 100.0 2.6E-38 5.6E-43 279.4 18.0 160 6-170 2-163 (231)
12 TIGR02356 adenyl_thiF thiazole 100.0 2.1E-38 4.5E-43 274.7 14.9 152 13-169 1-155 (202)
13 cd01488 Uba3_RUB Ubiquitin act 100.0 2.3E-37 4.9E-42 280.0 20.0 225 33-275 1-260 (291)
14 PRK07411 hypothetical protein; 100.0 8.5E-38 1.8E-42 295.4 17.5 161 4-169 9-172 (390)
15 cd00757 ThiF_MoeB_HesA_family 100.0 6.4E-38 1.4E-42 276.6 15.5 153 13-170 1-156 (228)
16 PRK07878 molybdopterin biosynt 100.0 1.3E-37 2.8E-42 294.5 17.6 159 5-168 14-175 (392)
17 PRK05597 molybdopterin biosynt 100.0 2.7E-37 5.8E-42 288.8 17.1 159 7-170 2-163 (355)
18 PRK05600 thiamine biosynthesis 100.0 2.2E-37 4.9E-42 290.2 16.6 160 5-169 13-175 (370)
19 TIGR02355 moeB molybdopterin s 100.0 3.1E-37 6.6E-42 273.8 14.4 151 11-166 2-155 (240)
20 cd01484 E1-2_like Ubiquitin ac 100.0 6.5E-36 1.4E-40 263.6 17.3 214 33-276 1-233 (234)
21 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.7E-35 3.7E-40 270.4 20.3 240 33-284 1-284 (312)
22 TIGR01408 Ube1 ubiquitin-activ 100.0 4.1E-36 8.9E-41 309.3 16.5 186 11-202 399-600 (1008)
23 PRK12475 thiamine/molybdopteri 100.0 1.3E-34 2.7E-39 268.8 16.5 156 12-170 3-161 (338)
24 PRK07688 thiamine/molybdopteri 100.0 2.2E-34 4.8E-39 267.3 16.0 154 12-170 3-161 (339)
25 PRK15116 sulfur acceptor prote 100.0 3.6E-34 7.9E-39 256.5 15.8 151 5-160 4-156 (268)
26 COG0476 ThiF Dinucleotide-util 100.0 6.9E-34 1.5E-38 254.7 15.7 162 5-171 2-166 (254)
27 PRK08762 molybdopterin biosynt 100.0 1.3E-33 2.8E-38 266.2 18.0 161 5-170 107-270 (376)
28 PTZ00245 ubiquitin activating 100.0 3.2E-34 6.9E-39 250.0 10.2 124 6-138 1-124 (287)
29 PRK14851 hypothetical protein; 100.0 6.1E-33 1.3E-37 276.4 17.2 159 7-170 19-180 (679)
30 KOG2015 NEDD8-activating compl 100.0 2.3E-32 5E-37 243.3 16.3 243 22-276 31-295 (422)
31 PRK14852 hypothetical protein; 100.0 2E-32 4.4E-37 277.0 16.8 155 11-170 312-469 (989)
32 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.4E-31 5.2E-36 251.8 21.0 164 33-202 1-180 (435)
33 PF00899 ThiF: ThiF family; I 100.0 8.1E-32 1.7E-36 219.1 15.2 133 30-167 1-134 (135)
34 KOG2017 Molybdopterin synthase 100.0 3.4E-32 7.4E-37 244.3 10.7 207 4-224 37-249 (427)
35 PRK08644 thiamine biosynthesis 100.0 7E-31 1.5E-35 229.1 14.4 148 11-164 8-157 (212)
36 cd01483 E1_enzyme_family Super 100.0 1.9E-30 4.1E-35 212.9 14.6 132 33-169 1-133 (143)
37 cd00755 YgdL_like Family of ac 100.0 2.4E-30 5.1E-35 228.0 14.2 136 21-161 1-138 (231)
38 PRK07877 hypothetical protein; 100.0 1.3E-29 2.8E-34 253.4 16.3 151 6-165 80-234 (722)
39 KOG2013 SMT3/SUMO-activating c 100.0 2.2E-30 4.8E-35 240.7 8.9 174 24-202 5-185 (603)
40 KOG2012 Ubiquitin activating e 100.0 1.6E-29 3.4E-34 246.8 6.8 192 5-202 400-611 (1013)
41 TIGR03603 cyclo_dehy_ocin bact 99.9 1.6E-27 3.5E-32 219.3 13.8 148 4-170 45-198 (318)
42 COG1179 Dinucleotide-utilizing 99.9 1.3E-27 2.9E-32 206.7 12.0 150 6-160 5-156 (263)
43 cd01486 Apg7 Apg7 is an E1-lik 99.9 3.2E-27 7E-32 212.9 14.1 133 33-171 1-153 (307)
44 TIGR01381 E1_like_apg7 E1-like 99.9 7.9E-27 1.7E-31 227.5 15.1 147 22-171 329-493 (664)
45 cd01487 E1_ThiF_like E1_ThiF_l 99.9 8.3E-27 1.8E-31 197.6 12.7 129 33-167 1-131 (174)
46 TIGR02354 thiF_fam2 thiamine b 99.9 2.2E-26 4.7E-31 199.0 14.1 141 19-166 9-151 (200)
47 PRK06153 hypothetical protein; 99.9 1.5E-24 3.2E-29 201.3 13.3 130 23-159 168-300 (393)
48 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 3.2E-23 7E-28 183.4 12.5 132 30-168 10-152 (244)
49 KOG2018 Predicted dinucleotide 99.8 3.9E-20 8.4E-25 164.9 10.6 144 12-160 55-200 (430)
50 KOG2336 Molybdopterin biosynth 99.7 9.7E-18 2.1E-22 147.7 10.7 156 10-171 58-231 (422)
51 TIGR03693 ocin_ThiF_like putat 99.6 1.3E-14 2.9E-19 141.1 13.5 145 4-167 96-251 (637)
52 KOG2337 Ubiquitin activating E 99.6 7.6E-15 1.6E-19 138.5 9.6 145 24-171 333-495 (669)
53 COG4015 Predicted dinucleotide 98.8 2.6E-08 5.7E-13 81.8 10.2 124 30-164 17-146 (217)
54 PF01488 Shikimate_DH: Shikima 98.1 1.6E-05 3.6E-10 64.4 7.7 78 28-134 9-86 (135)
55 PRK06718 precorrin-2 dehydroge 98.0 6.8E-05 1.5E-09 65.0 10.4 95 28-157 7-101 (202)
56 PRK12549 shikimate 5-dehydroge 97.9 3.9E-05 8.5E-10 70.0 8.6 76 29-131 125-200 (284)
57 TIGR01470 cysG_Nterm siroheme 97.9 0.00015 3.3E-09 63.0 10.7 103 29-165 7-109 (205)
58 COG1748 LYS9 Saccharopine dehy 97.8 0.00012 2.5E-09 69.3 10.0 99 32-160 2-102 (389)
59 PF13241 NAD_binding_7: Putati 97.6 0.00013 2.7E-09 56.4 5.3 89 28-157 4-92 (103)
60 PRK06719 precorrin-2 dehydroge 97.6 0.00081 1.8E-08 56.0 10.3 84 28-146 10-93 (157)
61 PRK05562 precorrin-2 dehydroge 97.5 0.0016 3.5E-08 57.3 11.0 99 28-160 22-120 (223)
62 PRK12548 shikimate 5-dehydroge 97.4 0.00061 1.3E-08 62.3 8.5 83 29-132 124-208 (289)
63 PF03435 Saccharop_dh: Sacchar 97.2 0.0011 2.3E-08 63.0 7.9 93 34-155 1-96 (386)
64 TIGR01809 Shik-DH-AROM shikima 97.2 0.0011 2.3E-08 60.5 7.2 77 29-132 123-199 (282)
65 PRK14027 quinate/shikimate deh 97.2 0.0013 2.9E-08 60.0 7.7 79 29-132 125-203 (283)
66 COG0373 HemA Glutamyl-tRNA red 97.2 0.00097 2.1E-08 63.6 7.0 77 28-136 175-251 (414)
67 PRK12749 quinate/shikimate deh 97.1 0.002 4.3E-08 59.0 8.0 81 29-131 122-204 (288)
68 PRK04148 hypothetical protein; 97.1 0.0065 1.4E-07 49.2 10.0 97 30-160 16-112 (134)
69 PRK13940 glutamyl-tRNA reducta 97.1 0.0012 2.6E-08 63.4 6.4 77 28-135 178-254 (414)
70 PRK00258 aroE shikimate 5-dehy 97.0 0.0022 4.8E-08 58.2 7.3 74 29-132 121-194 (278)
71 COG0169 AroE Shikimate 5-dehyd 97.0 0.0028 6.2E-08 57.7 7.8 75 30-132 125-199 (283)
72 KOG2016 NEDD8-activating compl 97.0 0.0022 4.7E-08 60.9 7.2 67 208-274 413-502 (523)
73 cd01065 NAD_bind_Shikimate_DH 96.9 0.003 6.6E-08 51.6 6.8 35 29-63 17-51 (155)
74 PRK10637 cysG siroheme synthas 96.9 0.0069 1.5E-07 58.9 10.4 115 28-176 9-126 (457)
75 PF00056 Ldh_1_N: lactate/mala 96.9 0.0031 6.7E-08 51.5 6.5 73 33-132 2-78 (141)
76 PF03446 NAD_binding_2: NAD bi 96.8 0.0022 4.7E-08 53.5 5.3 114 32-161 2-123 (163)
77 PF03807 F420_oxidored: NADP o 96.8 0.016 3.4E-07 43.5 9.2 90 33-156 1-93 (96)
78 COG1648 CysG Siroheme synthase 96.7 0.0073 1.6E-07 52.7 7.9 100 28-161 9-108 (210)
79 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.011 2.4E-07 54.6 9.5 84 29-144 176-259 (311)
80 cd05291 HicDH_like L-2-hydroxy 96.7 0.0075 1.6E-07 55.5 8.3 75 32-133 1-78 (306)
81 COG0569 TrkA K+ transport syst 96.6 0.016 3.4E-07 51.1 9.2 109 32-170 1-113 (225)
82 PRK00066 ldh L-lactate dehydro 96.5 0.015 3.2E-07 53.9 8.8 75 31-132 6-82 (315)
83 COG1086 Predicted nucleoside-d 96.5 0.016 3.4E-07 57.0 9.4 85 24-130 243-332 (588)
84 PRK05708 2-dehydropantoate 2-r 96.5 0.024 5.3E-07 52.1 10.2 33 31-64 2-34 (305)
85 PF02254 TrkA_N: TrkA-N domain 96.5 0.052 1.1E-06 42.0 10.6 90 34-154 1-93 (116)
86 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.012 2.6E-07 50.2 7.5 80 28-133 25-107 (194)
87 TIGR01035 hemA glutamyl-tRNA r 96.4 0.014 2.9E-07 56.3 8.6 36 28-63 177-212 (417)
88 cd01493 APPBP1_RUB Ubiquitin a 96.4 0.013 2.8E-07 56.5 8.2 69 206-274 285-406 (425)
89 TIGR03882 cyclo_dehyd_2 bacter 96.4 0.0034 7.4E-08 54.0 3.6 54 22-75 96-159 (193)
90 PLN00203 glutamyl-tRNA reducta 96.4 0.011 2.3E-07 58.5 7.4 78 29-135 264-341 (519)
91 PF02558 ApbA: Ketopantoate re 96.3 0.01 2.2E-07 48.3 5.8 89 34-146 1-90 (151)
92 PRK15469 ghrA bifunctional gly 96.3 0.018 3.8E-07 53.3 8.0 42 21-63 126-167 (312)
93 PTZ00082 L-lactate dehydrogena 96.3 0.02 4.3E-07 53.2 8.4 35 29-63 4-38 (321)
94 cd05290 LDH_3 A subgroup of L- 96.3 0.024 5.2E-07 52.3 8.9 73 33-132 1-77 (307)
95 PRK14106 murD UDP-N-acetylmura 96.2 0.031 6.7E-07 54.0 9.9 35 29-64 3-37 (450)
96 PRK06522 2-dehydropantoate 2-r 96.2 0.044 9.5E-07 49.8 10.4 30 33-63 2-31 (304)
97 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.019 4.2E-07 47.5 7.2 106 33-161 1-106 (157)
98 PTZ00117 malate dehydrogenase; 96.1 0.02 4.4E-07 53.0 7.5 35 29-63 3-37 (319)
99 PRK09599 6-phosphogluconate de 96.1 0.014 3E-07 53.5 6.3 115 33-161 2-123 (301)
100 PRK09496 trkA potassium transp 96.1 0.033 7.1E-07 53.7 9.2 97 29-156 229-328 (453)
101 PRK13403 ketol-acid reductoiso 96.0 0.029 6.4E-07 52.0 8.1 97 25-158 10-107 (335)
102 PRK00094 gpsA NAD(P)H-dependen 96.0 0.047 1E-06 50.1 9.6 31 33-64 3-33 (325)
103 COG1893 ApbA Ketopantoate redu 95.9 0.041 9E-07 50.8 8.8 30 32-62 1-30 (307)
104 cd05311 NAD_bind_2_malic_enz N 95.9 0.0094 2E-07 52.6 4.3 37 28-64 22-60 (226)
105 PRK06130 3-hydroxybutyryl-CoA 95.9 0.047 1E-06 50.1 9.2 31 32-63 5-35 (311)
106 KOG0069 Glyoxylate/hydroxypyru 95.9 0.051 1.1E-06 50.6 9.2 93 26-155 157-251 (336)
107 PRK05479 ketol-acid reductoiso 95.9 0.03 6.5E-07 52.2 7.7 35 27-62 13-47 (330)
108 PRK00045 hemA glutamyl-tRNA re 95.9 0.018 3.9E-07 55.5 6.5 35 29-63 180-214 (423)
109 PRK05225 ketol-acid reductoiso 95.9 0.026 5.7E-07 54.5 7.4 125 5-160 6-134 (487)
110 PRK07680 late competence prote 95.9 0.076 1.6E-06 47.9 10.2 31 33-63 2-35 (273)
111 TIGR02992 ectoine_eutC ectoine 95.9 0.042 9.1E-07 51.1 8.7 76 31-134 129-205 (326)
112 cd00300 LDH_like L-lactate deh 95.9 0.034 7.4E-07 51.1 8.0 74 34-133 1-76 (300)
113 PRK07502 cyclohexadienyl dehyd 95.9 0.053 1.2E-06 49.8 9.2 33 31-63 6-39 (307)
114 PRK06141 ornithine cyclodeamin 95.8 0.041 8.8E-07 50.9 8.3 78 28-134 122-200 (314)
115 PRK14620 NAD(P)H-dependent gly 95.8 0.069 1.5E-06 49.4 9.8 30 33-63 2-31 (326)
116 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.022 4.7E-07 48.0 5.8 35 28-63 41-76 (168)
117 PRK12550 shikimate 5-dehydroge 95.8 0.032 7E-07 50.6 7.3 33 31-63 122-154 (272)
118 PLN02819 lysine-ketoglutarate 95.8 0.053 1.2E-06 57.6 9.8 25 30-54 568-592 (1042)
119 cd05293 LDH_1 A subgroup of L- 95.8 0.051 1.1E-06 50.3 8.7 74 31-132 3-80 (312)
120 PRK08293 3-hydroxybutyryl-CoA 95.8 0.036 7.8E-07 50.4 7.6 31 32-63 4-34 (287)
121 PF01113 DapB_N: Dihydrodipico 95.8 0.13 2.7E-06 40.9 9.8 98 33-161 2-101 (124)
122 PF13460 NAD_binding_10: NADH( 95.7 0.11 2.5E-06 43.1 9.8 93 34-161 1-101 (183)
123 PRK11880 pyrroline-5-carboxyla 95.7 0.1 2.2E-06 46.7 10.0 32 32-63 3-36 (267)
124 PRK07819 3-hydroxybutyryl-CoA 95.6 0.057 1.2E-06 49.3 8.3 32 32-64 6-37 (286)
125 PRK07340 ornithine cyclodeamin 95.6 0.047 1E-06 50.3 7.8 77 28-134 122-199 (304)
126 PLN02602 lactate dehydrogenase 95.6 0.057 1.2E-06 50.8 8.4 73 32-132 38-114 (350)
127 PRK07417 arogenate dehydrogena 95.6 0.082 1.8E-06 47.9 9.2 30 33-63 2-31 (279)
128 PRK03562 glutathione-regulated 95.6 0.09 1.9E-06 53.2 10.2 91 31-152 400-493 (621)
129 PRK08618 ornithine cyclodeamin 95.5 0.076 1.6E-06 49.3 9.0 79 30-136 126-205 (325)
130 PRK07066 3-hydroxybutyryl-CoA 95.5 0.068 1.5E-06 49.7 8.4 33 32-65 8-40 (321)
131 PRK03659 glutathione-regulated 95.5 0.1 2.3E-06 52.6 10.4 93 31-154 400-495 (601)
132 PRK06197 short chain dehydroge 95.5 0.046 1E-06 49.8 7.3 42 21-63 6-48 (306)
133 PRK07679 pyrroline-5-carboxyla 95.5 0.15 3.2E-06 46.2 10.5 26 30-55 2-27 (279)
134 TIGR01915 npdG NADPH-dependent 95.5 0.17 3.8E-06 44.1 10.5 85 33-144 2-89 (219)
135 PRK12921 2-dehydropantoate 2-r 95.5 0.085 1.8E-06 48.0 8.9 30 33-63 2-31 (305)
136 PRK07634 pyrroline-5-carboxyla 95.4 0.14 3E-06 45.1 9.9 26 30-55 3-28 (245)
137 PRK12491 pyrroline-5-carboxyla 95.4 0.15 3.2E-06 46.2 10.2 33 31-63 2-37 (272)
138 PF02719 Polysacc_synt_2: Poly 95.3 0.045 9.7E-07 50.1 6.5 76 34-131 1-85 (293)
139 PRK15461 NADH-dependent gamma- 95.2 0.14 3E-06 46.9 9.5 114 32-161 2-124 (296)
140 COG0111 SerA Phosphoglycerate 95.2 0.059 1.3E-06 50.1 7.0 50 13-63 120-173 (324)
141 PF03949 Malic_M: Malic enzyme 95.1 0.14 3E-06 45.9 8.8 38 27-64 21-68 (255)
142 PF01118 Semialdhyde_dh: Semia 95.1 0.22 4.7E-06 39.2 9.1 95 33-157 1-97 (121)
143 PRK05854 short chain dehydroge 95.1 0.096 2.1E-06 48.1 8.1 35 28-63 11-46 (313)
144 PRK14618 NAD(P)H-dependent gly 95.1 0.12 2.6E-06 47.9 8.8 31 32-63 5-35 (328)
145 PRK01438 murD UDP-N-acetylmura 95.1 0.15 3.3E-06 49.7 9.9 35 29-64 14-48 (480)
146 TIGR00507 aroE shikimate 5-deh 95.1 0.26 5.6E-06 44.4 10.6 33 30-63 116-148 (270)
147 cd05312 NAD_bind_1_malic_enz N 95.1 0.26 5.6E-06 44.8 10.5 39 27-65 21-69 (279)
148 PLN02688 pyrroline-5-carboxyla 95.1 0.22 4.8E-06 44.5 10.1 29 33-61 2-33 (266)
149 PRK11559 garR tartronate semia 95.1 0.15 3.2E-06 46.4 9.1 32 32-64 3-34 (296)
150 PRK07063 short chain dehydroge 95.0 0.12 2.5E-06 45.7 8.3 35 28-63 4-39 (260)
151 PRK07530 3-hydroxybutyryl-CoA 95.0 0.33 7.1E-06 44.2 11.4 33 30-63 3-35 (292)
152 cd01075 NAD_bind_Leu_Phe_Val_D 95.0 0.25 5.5E-06 42.6 10.0 36 28-64 25-60 (200)
153 PF02826 2-Hacid_dh_C: D-isome 95.0 0.024 5.2E-07 47.9 3.6 41 24-65 29-69 (178)
154 PRK06035 3-hydroxyacyl-CoA deh 95.0 0.14 3.1E-06 46.5 8.9 32 32-64 4-35 (291)
155 PRK07574 formate dehydrogenase 95.0 0.09 1.9E-06 50.1 7.8 36 27-63 188-223 (385)
156 PRK06223 malate dehydrogenase; 95.0 0.24 5.3E-06 45.4 10.5 32 32-63 3-34 (307)
157 PRK08291 ectoine utilization p 95.0 0.13 2.8E-06 47.9 8.8 76 31-134 132-208 (330)
158 PRK06928 pyrroline-5-carboxyla 95.0 0.25 5.5E-06 44.7 10.4 31 33-63 3-36 (277)
159 PLN02350 phosphogluconate dehy 94.9 0.098 2.1E-06 51.4 8.0 120 32-161 7-136 (493)
160 PF00070 Pyr_redox: Pyridine n 94.9 0.042 9.1E-07 39.9 4.2 54 33-101 1-54 (80)
161 PLN03139 formate dehydrogenase 94.9 0.1 2.3E-06 49.6 8.0 36 27-63 195-230 (386)
162 PRK14982 acyl-ACP reductase; P 94.9 0.15 3.2E-06 47.8 8.8 36 28-63 152-189 (340)
163 PRK09242 tropinone reductase; 94.9 0.16 3.5E-06 44.7 8.8 81 28-131 6-96 (257)
164 PRK10669 putative cation:proto 94.9 0.21 4.6E-06 49.8 10.5 32 31-63 417-448 (558)
165 PRK09260 3-hydroxybutyryl-CoA 94.9 0.22 4.8E-06 45.2 9.8 32 32-64 2-33 (288)
166 TIGR00872 gnd_rel 6-phosphoglu 94.9 0.083 1.8E-06 48.4 7.1 115 33-161 2-122 (298)
167 TIGR00873 gnd 6-phosphoglucona 94.9 0.062 1.3E-06 52.5 6.5 120 33-161 1-127 (467)
168 PRK12439 NAD(P)H-dependent gly 94.9 0.2 4.3E-06 46.9 9.7 107 32-161 8-114 (341)
169 KOG4169 15-hydroxyprostaglandi 94.9 0.059 1.3E-06 47.4 5.6 78 29-130 3-90 (261)
170 PRK05808 3-hydroxybutyryl-CoA 94.9 0.19 4.1E-06 45.5 9.3 32 32-64 4-35 (282)
171 cd05292 LDH_2 A subgroup of L- 94.9 0.1 2.2E-06 48.1 7.6 31 33-63 2-33 (308)
172 PLN02545 3-hydroxybutyryl-CoA 94.8 0.23 4.9E-06 45.3 9.7 32 32-64 5-36 (295)
173 PRK06129 3-hydroxyacyl-CoA deh 94.8 0.14 3E-06 47.1 8.4 32 32-64 3-34 (308)
174 PTZ00142 6-phosphogluconate de 94.8 0.049 1.1E-06 53.2 5.6 120 32-161 2-130 (470)
175 PRK10537 voltage-gated potassi 94.8 0.15 3.3E-06 48.7 8.8 90 26-148 235-327 (393)
176 TIGR01759 MalateDH-SF1 malate 94.8 0.1 2.2E-06 48.5 7.4 76 32-132 4-88 (323)
177 PRK06249 2-dehydropantoate 2-r 94.8 0.19 4E-06 46.3 9.1 34 31-65 5-38 (313)
178 PRK14619 NAD(P)H-dependent gly 94.8 0.24 5.2E-06 45.5 9.8 33 31-64 4-36 (308)
179 cd05191 NAD_bind_amino_acid_DH 94.7 0.057 1.2E-06 39.9 4.6 36 28-63 20-55 (86)
180 TIGR01505 tartro_sem_red 2-hyd 94.7 0.23 5E-06 45.1 9.4 32 33-65 1-32 (291)
181 TIGR02853 spore_dpaA dipicolin 94.7 0.24 5.2E-06 45.2 9.5 35 28-63 148-182 (287)
182 PRK05476 S-adenosyl-L-homocyst 94.7 0.18 3.9E-06 48.7 8.9 36 28-64 209-244 (425)
183 cd00762 NAD_bind_malic_enz NAD 94.7 0.086 1.9E-06 47.2 6.2 39 27-65 21-69 (254)
184 PLN02240 UDP-glucose 4-epimera 94.7 0.41 8.8E-06 44.2 11.1 34 29-63 3-37 (352)
185 PRK08251 short chain dehydroge 94.7 0.23 5E-06 43.3 9.0 62 31-115 2-64 (248)
186 PRK08229 2-dehydropantoate 2-r 94.6 0.21 4.6E-06 46.3 9.0 32 32-64 3-34 (341)
187 PRK09496 trkA potassium transp 94.6 0.3 6.5E-06 47.0 10.3 84 33-146 2-88 (453)
188 PRK07531 bifunctional 3-hydrox 94.6 0.27 5.9E-06 48.4 10.1 32 32-64 5-36 (495)
189 TIGR00518 alaDH alanine dehydr 94.6 0.14 3.1E-06 48.4 7.9 34 29-63 165-198 (370)
190 PLN02427 UDP-apiose/xylose syn 94.5 0.29 6.3E-06 46.1 10.0 37 27-63 10-47 (386)
191 cd01339 LDH-like_MDH L-lactate 94.5 0.16 3.4E-06 46.6 7.9 31 34-64 1-31 (300)
192 PRK06545 prephenate dehydrogen 94.5 0.28 6.2E-06 46.1 9.8 31 32-63 1-31 (359)
193 PTZ00345 glycerol-3-phosphate 94.5 0.36 7.7E-06 45.7 10.3 109 30-161 10-132 (365)
194 PRK08655 prephenate dehydrogen 94.5 0.3 6.5E-06 47.3 10.0 31 33-64 2-33 (437)
195 PTZ00431 pyrroline carboxylate 94.5 0.27 5.9E-06 44.1 9.1 34 30-63 2-38 (260)
196 PF10727 Rossmann-like: Rossma 94.4 0.16 3.5E-06 40.7 6.8 81 30-144 9-89 (127)
197 TIGR01763 MalateDH_bact malate 94.4 0.47 1E-05 43.7 10.7 32 32-63 2-33 (305)
198 PRK12490 6-phosphogluconate de 94.4 0.074 1.6E-06 48.7 5.4 115 33-161 2-123 (299)
199 PRK00048 dihydrodipicolinate r 94.4 0.23 5.1E-06 44.5 8.5 90 32-160 2-93 (257)
200 TIGR01757 Malate-DH_plant mala 94.4 0.24 5.2E-06 47.2 8.9 76 32-132 45-129 (387)
201 PLN03209 translocon at the inn 94.3 0.48 1E-05 47.3 11.2 34 29-63 78-112 (576)
202 PRK06476 pyrroline-5-carboxyla 94.3 0.25 5.4E-06 44.1 8.5 23 33-55 2-24 (258)
203 TIGR03376 glycerol3P_DH glycer 94.3 0.55 1.2E-05 44.0 11.0 105 33-162 1-120 (342)
204 PRK02705 murD UDP-N-acetylmura 94.3 0.4 8.6E-06 46.4 10.5 32 32-64 1-32 (459)
205 PLN02520 bifunctional 3-dehydr 94.3 0.092 2E-06 52.1 6.1 34 29-63 377-410 (529)
206 TIGR00465 ilvC ketol-acid redu 94.3 0.37 8.1E-06 44.6 9.8 33 29-62 1-33 (314)
207 PRK11199 tyrA bifunctional cho 94.2 0.48 1.1E-05 44.9 10.6 32 32-64 99-131 (374)
208 cd00704 MDH Malate dehydrogena 94.1 0.084 1.8E-06 49.1 5.2 33 32-64 1-40 (323)
209 PRK00141 murD UDP-N-acetylmura 94.1 0.39 8.4E-06 46.9 10.0 39 24-63 8-46 (473)
210 TIGR03026 NDP-sugDHase nucleot 94.1 0.4 8.7E-06 45.9 9.9 39 33-72 2-40 (411)
211 PRK13302 putative L-aspartate 94.1 0.43 9.3E-06 43.2 9.6 36 29-64 4-41 (271)
212 PRK13304 L-aspartate dehydroge 94.0 0.34 7.3E-06 43.7 8.9 32 33-64 3-36 (265)
213 PRK08507 prephenate dehydrogen 94.0 0.39 8.4E-06 43.3 9.3 31 33-63 2-33 (275)
214 COG0039 Mdh Malate/lactate deh 94.0 0.14 2.9E-06 47.4 6.3 32 32-63 1-33 (313)
215 PRK09310 aroDE bifunctional 3- 93.9 0.15 3.2E-06 50.1 6.7 34 29-63 330-363 (477)
216 PRK07831 short chain dehydroge 93.9 0.31 6.7E-06 43.1 8.4 35 28-63 14-50 (262)
217 cd00650 LDH_MDH_like NAD-depen 93.9 0.15 3.2E-06 45.8 6.3 30 34-63 1-34 (263)
218 PRK05875 short chain dehydroge 93.9 0.34 7.5E-06 43.1 8.6 35 28-63 4-39 (276)
219 PRK07478 short chain dehydroge 93.8 0.22 4.8E-06 43.7 7.0 34 29-63 4-38 (254)
220 cd01338 MDH_choloroplast_like 93.7 0.15 3.4E-06 47.3 6.1 32 32-63 3-41 (322)
221 PRK11064 wecC UDP-N-acetyl-D-m 93.6 0.51 1.1E-05 45.4 9.7 35 31-66 3-37 (415)
222 PRK08217 fabG 3-ketoacyl-(acyl 93.6 0.2 4.4E-06 43.6 6.5 34 29-63 3-37 (253)
223 PRK07231 fabG 3-ketoacyl-(acyl 93.6 0.24 5.1E-06 43.1 6.9 35 29-64 3-38 (251)
224 PRK07062 short chain dehydroge 93.6 0.42 9.1E-06 42.2 8.6 34 29-63 6-40 (265)
225 PLN00106 malate dehydrogenase 93.6 0.19 4.1E-06 46.7 6.5 36 30-65 17-54 (323)
226 PRK15059 tartronate semialdehy 93.6 0.31 6.7E-06 44.6 7.8 111 33-160 2-121 (292)
227 PRK01710 murD UDP-N-acetylmura 93.5 0.56 1.2E-05 45.6 9.9 37 27-64 10-46 (458)
228 COG0300 DltE Short-chain dehyd 93.4 0.38 8.3E-06 43.4 7.9 79 29-131 4-92 (265)
229 COG0287 TyrA Prephenate dehydr 93.4 0.63 1.4E-05 42.4 9.3 32 31-63 3-34 (279)
230 PRK12826 3-ketoacyl-(acyl-carr 93.3 0.22 4.8E-06 43.2 6.3 35 28-63 3-38 (251)
231 TIGR01181 dTDP_gluc_dehyt dTDP 93.3 1.2 2.5E-05 40.1 11.2 31 33-63 1-33 (317)
232 PRK00676 hemA glutamyl-tRNA re 93.3 0.11 2.4E-06 48.5 4.4 37 28-64 171-207 (338)
233 cd01337 MDH_glyoxysomal_mitoch 93.3 0.23 4.9E-06 46.0 6.5 32 33-64 2-35 (310)
234 COG1063 Tdh Threonine dehydrog 93.3 0.41 8.9E-06 44.9 8.4 95 30-152 168-265 (350)
235 TIGR01772 MDH_euk_gproteo mala 93.3 0.19 4.1E-06 46.5 6.0 33 33-65 1-35 (312)
236 PTZ00325 malate dehydrogenase; 93.3 0.27 5.9E-06 45.7 7.0 35 29-63 6-42 (321)
237 PRK05866 short chain dehydroge 93.3 0.31 6.7E-06 44.3 7.4 35 28-63 37-72 (293)
238 PF00106 adh_short: short chai 93.3 0.43 9.3E-06 38.8 7.6 61 32-114 1-62 (167)
239 PRK12771 putative glutamate sy 93.3 0.47 1E-05 47.4 9.2 34 30-64 136-169 (564)
240 PRK06949 short chain dehydroge 93.2 0.37 8E-06 42.2 7.6 34 29-63 7-41 (258)
241 TIGR01771 L-LDH-NAD L-lactate 93.2 0.26 5.5E-06 45.4 6.7 68 36-132 1-73 (299)
242 PRK02472 murD UDP-N-acetylmura 93.2 0.44 9.5E-06 45.9 8.7 34 29-63 3-36 (447)
243 TIGR02622 CDP_4_6_dhtase CDP-g 93.2 1.1 2.4E-05 41.6 11.0 35 29-64 2-37 (349)
244 PRK05867 short chain dehydroge 93.2 0.34 7.4E-06 42.5 7.3 34 29-63 7-41 (253)
245 PLN02780 ketoreductase/ oxidor 93.2 0.48 1E-05 43.8 8.5 33 30-63 52-85 (320)
246 PF01408 GFO_IDH_MocA: Oxidore 93.1 1.1 2.4E-05 34.5 9.4 31 33-63 2-34 (120)
247 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.1 0.64 1.4E-05 45.9 9.7 32 31-63 5-36 (503)
248 PRK05442 malate dehydrogenase; 93.1 0.23 4.9E-06 46.3 6.2 32 32-63 5-43 (326)
249 KOG1205 Predicted dehydrogenas 93.1 0.56 1.2E-05 42.8 8.6 86 22-130 3-98 (282)
250 PRK06046 alanine dehydrogenase 93.1 0.49 1.1E-05 44.0 8.5 76 30-134 128-204 (326)
251 PRK02006 murD UDP-N-acetylmura 93.1 0.5 1.1E-05 46.4 9.0 34 29-63 5-38 (498)
252 COG1023 Gnd Predicted 6-phosph 93.1 0.55 1.2E-05 41.8 8.1 126 33-172 2-139 (300)
253 PLN02928 oxidoreductase family 93.0 0.1 2.2E-06 49.0 3.7 42 21-63 149-190 (347)
254 PRK07576 short chain dehydroge 93.0 0.19 4.1E-06 44.7 5.3 37 26-63 4-41 (264)
255 PRK13243 glyoxylate reductase; 92.9 0.14 2.9E-06 47.9 4.4 36 27-63 146-181 (333)
256 PRK04308 murD UDP-N-acetylmura 92.8 0.75 1.6E-05 44.4 9.7 34 29-63 3-36 (445)
257 COG0240 GpsA Glycerol-3-phosph 92.8 0.63 1.4E-05 43.2 8.6 31 32-63 2-32 (329)
258 PRK09880 L-idonate 5-dehydroge 92.8 0.69 1.5E-05 42.8 9.0 34 30-63 169-202 (343)
259 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.17 3.6E-06 44.4 4.6 37 28-64 20-56 (217)
260 PRK06436 glycerate dehydrogena 92.7 0.11 2.4E-06 47.8 3.5 43 21-64 112-154 (303)
261 COG1064 AdhP Zn-dependent alco 92.7 1.4 3E-05 41.3 10.6 85 31-146 167-251 (339)
262 PRK13394 3-hydroxybutyrate deh 92.7 0.37 8E-06 42.3 6.7 35 28-63 4-39 (262)
263 PRK06172 short chain dehydroge 92.6 0.35 7.5E-06 42.4 6.5 34 29-63 5-39 (253)
264 cd05296 GH4_P_beta_glucosidase 92.6 0.49 1.1E-05 45.7 7.8 108 33-166 2-116 (419)
265 TIGR03589 PseB UDP-N-acetylglu 92.6 0.65 1.4E-05 42.8 8.5 35 29-63 2-38 (324)
266 PRK06194 hypothetical protein; 92.6 0.46 1E-05 42.5 7.3 34 29-63 4-38 (287)
267 PLN02206 UDP-glucuronate decar 92.6 1.1 2.3E-05 43.6 10.3 105 29-164 117-239 (442)
268 PRK12939 short chain dehydroge 92.5 0.48 1E-05 41.2 7.2 34 29-63 5-39 (250)
269 PF12847 Methyltransf_18: Meth 92.5 1.3 2.8E-05 33.4 8.9 78 30-131 1-78 (112)
270 PRK09186 flagellin modificatio 92.5 0.58 1.3E-05 40.9 7.7 34 29-63 2-36 (256)
271 PRK15181 Vi polysaccharide bio 92.5 1.4 3.1E-05 40.9 10.8 35 28-63 12-47 (348)
272 TIGR03206 benzo_BadH 2-hydroxy 92.5 0.5 1.1E-05 41.1 7.3 34 29-63 1-35 (250)
273 PRK11908 NAD-dependent epimera 92.4 1.7 3.8E-05 40.1 11.2 32 32-63 2-34 (347)
274 PRK00811 spermidine synthase; 92.4 0.25 5.4E-06 45.0 5.4 54 7-63 55-108 (283)
275 PRK13301 putative L-aspartate 92.4 0.15 3.2E-06 46.1 3.8 102 32-146 3-112 (267)
276 PF10087 DUF2325: Uncharacteri 92.4 0.77 1.7E-05 34.7 7.3 71 88-162 10-87 (97)
277 PLN00016 RNA-binding protein; 92.4 0.46 1E-05 44.7 7.4 116 26-164 47-171 (378)
278 COG2084 MmsB 3-hydroxyisobutyr 92.4 0.24 5.1E-06 45.3 5.1 116 32-162 1-125 (286)
279 PRK07523 gluconate 5-dehydroge 92.3 0.48 1E-05 41.6 7.0 35 28-63 7-42 (255)
280 PRK08213 gluconate 5-dehydroge 92.3 0.5 1.1E-05 41.5 7.2 35 28-63 9-44 (259)
281 PRK05565 fabG 3-ketoacyl-(acyl 92.3 0.41 8.9E-06 41.5 6.5 34 29-63 3-38 (247)
282 COG0771 MurD UDP-N-acetylmuram 92.3 0.53 1.2E-05 45.7 7.7 38 29-67 5-42 (448)
283 PRK06181 short chain dehydroge 92.3 0.59 1.3E-05 41.2 7.6 31 32-63 2-33 (263)
284 COG0281 SfcA Malic enzyme [Ene 92.3 0.76 1.7E-05 43.9 8.5 40 27-66 195-236 (432)
285 PRK07666 fabG 3-ketoacyl-(acyl 92.2 0.4 8.7E-06 41.6 6.4 35 28-63 4-39 (239)
286 PRK12429 3-hydroxybutyrate deh 92.2 0.52 1.1E-05 41.2 7.1 34 29-63 2-36 (258)
287 PRK04690 murD UDP-N-acetylmura 92.1 0.66 1.4E-05 45.3 8.3 35 29-64 6-40 (468)
288 TIGR01373 soxB sarcosine oxida 92.1 0.26 5.7E-06 46.7 5.5 44 31-74 30-74 (407)
289 PRK06139 short chain dehydroge 92.1 0.48 1E-05 44.0 6.9 35 28-63 4-39 (330)
290 PRK06199 ornithine cyclodeamin 92.0 1 2.2E-05 42.9 9.2 76 31-133 155-233 (379)
291 PRK03803 murD UDP-N-acetylmura 92.0 0.96 2.1E-05 43.7 9.3 32 31-63 6-37 (448)
292 PRK08339 short chain dehydroge 92.0 0.82 1.8E-05 40.6 8.2 34 29-63 6-40 (263)
293 cd05294 LDH-like_MDH_nadp A la 92.0 0.65 1.4E-05 42.9 7.7 32 32-63 1-34 (309)
294 PLN02852 ferredoxin-NADP+ redu 92.0 0.8 1.7E-05 45.1 8.7 35 30-65 25-61 (491)
295 PRK06935 2-deoxy-D-gluconate 3 92.0 0.6 1.3E-05 41.1 7.2 35 28-63 12-47 (258)
296 PLN03075 nicotianamine synthas 91.9 2.9 6.3E-05 38.4 11.7 113 30-167 123-243 (296)
297 TIGR02371 ala_DH_arch alanine 91.9 0.86 1.9E-05 42.4 8.4 75 30-133 127-202 (325)
298 PRK08063 enoyl-(acyl carrier p 91.9 0.53 1.1E-05 41.0 6.7 28 29-56 2-30 (250)
299 PLN02896 cinnamyl-alcohol dehy 91.9 1.8 3.9E-05 40.2 10.6 32 31-63 10-42 (353)
300 PRK06125 short chain dehydroge 91.9 0.94 2E-05 39.9 8.4 34 29-63 5-39 (259)
301 COG1052 LdhA Lactate dehydroge 91.8 0.54 1.2E-05 43.7 7.0 50 12-63 119-177 (324)
302 PRK12779 putative bifunctional 91.8 0.74 1.6E-05 49.0 8.8 96 30-133 305-402 (944)
303 PRK06567 putative bifunctional 91.8 1.3 2.9E-05 47.0 10.4 38 29-67 381-418 (1028)
304 PRK08268 3-hydroxy-acyl-CoA de 91.8 0.7 1.5E-05 45.7 8.1 32 32-64 8-39 (507)
305 PF02737 3HCDH_N: 3-hydroxyacy 91.8 0.23 5.1E-06 42.0 4.2 32 33-65 1-32 (180)
306 PRK07453 protochlorophyllide o 91.6 0.53 1.1E-05 43.2 6.7 34 29-63 4-38 (322)
307 PRK10675 UDP-galactose-4-epime 91.6 2 4.2E-05 39.4 10.5 30 33-63 2-32 (338)
308 TIGR01202 bchC 2-desacetyl-2-h 91.6 1.4 2.9E-05 40.3 9.4 34 30-63 144-177 (308)
309 PRK12746 short chain dehydroge 91.6 0.42 9.2E-06 41.8 5.8 34 27-61 2-36 (254)
310 PRK07035 short chain dehydroge 91.6 0.76 1.6E-05 40.2 7.4 35 28-63 5-40 (252)
311 PRK08589 short chain dehydroge 91.6 0.47 1E-05 42.3 6.1 35 28-63 3-38 (272)
312 cd05298 GH4_GlvA_pagL_like Gly 91.6 0.65 1.4E-05 45.0 7.4 105 33-165 2-114 (437)
313 PRK00421 murC UDP-N-acetylmura 91.5 1.2 2.5E-05 43.4 9.2 33 30-63 6-39 (461)
314 PLN00112 malate dehydrogenase 91.4 0.91 2E-05 44.1 8.3 75 32-133 101-186 (444)
315 PRK07814 short chain dehydroge 91.4 0.77 1.7E-05 40.6 7.4 34 29-63 8-42 (263)
316 cd08230 glucose_DH Glucose deh 91.4 1.4 3E-05 40.9 9.4 33 30-63 172-204 (355)
317 PRK08818 prephenate dehydrogen 91.4 1.4 3.1E-05 41.7 9.4 35 29-63 2-37 (370)
318 PRK08277 D-mannonate oxidoredu 91.4 0.76 1.7E-05 40.9 7.3 35 28-63 7-42 (278)
319 PRK12769 putative oxidoreducta 91.4 1.1 2.3E-05 45.7 9.2 34 30-64 326-359 (654)
320 cd01076 NAD_bind_1_Glu_DH NAD( 91.3 0.81 1.7E-05 40.4 7.2 38 27-64 27-64 (227)
321 PRK06940 short chain dehydroge 91.3 0.78 1.7E-05 41.1 7.3 31 31-63 2-32 (275)
322 TIGR02469 CbiT precorrin-6Y C5 91.3 5.3 0.00011 30.4 11.3 92 31-146 20-111 (124)
323 PRK12937 short chain dehydroge 91.2 0.69 1.5E-05 40.1 6.7 33 29-62 3-36 (245)
324 COG1250 FadB 3-hydroxyacyl-CoA 91.2 0.4 8.6E-06 44.3 5.3 33 31-64 3-35 (307)
325 TIGR02632 RhaD_aldol-ADH rhamn 91.1 1.3 2.8E-05 45.4 9.4 34 29-63 412-446 (676)
326 TIGR00065 ftsZ cell division p 91.0 1.2 2.6E-05 41.9 8.4 42 24-65 10-53 (349)
327 PRK03369 murD UDP-N-acetylmura 91.0 1.4 3.1E-05 43.2 9.3 33 30-63 11-43 (488)
328 PRK05876 short chain dehydroge 91.0 0.43 9.3E-06 42.9 5.3 34 29-63 4-38 (275)
329 COG0665 DadA Glycine/D-amino a 91.0 0.37 8E-06 45.0 5.0 41 30-71 3-43 (387)
330 PRK12367 short chain dehydroge 91.0 0.43 9.2E-06 42.3 5.2 39 25-64 8-47 (245)
331 PRK06138 short chain dehydroge 90.9 1.4 3E-05 38.3 8.5 34 29-63 3-37 (252)
332 PRK12829 short chain dehydroge 90.9 1.2 2.6E-05 39.0 8.1 37 26-63 6-43 (264)
333 PRK11730 fadB multifunctional 90.9 1.6 3.4E-05 45.1 9.9 32 32-64 314-345 (715)
334 PRK12814 putative NADPH-depend 90.9 1.3 2.9E-05 45.1 9.3 34 30-64 192-225 (652)
335 PRK12825 fabG 3-ketoacyl-(acyl 90.9 0.66 1.4E-05 40.0 6.3 31 29-60 4-35 (249)
336 PRK08410 2-hydroxyacid dehydro 90.9 0.23 5E-06 45.9 3.5 36 27-63 141-176 (311)
337 PRK05653 fabG 3-ketoacyl-(acyl 90.8 0.67 1.5E-05 39.9 6.2 35 29-64 3-38 (246)
338 CHL00194 ycf39 Ycf39; Provisio 90.8 3 6.6E-05 38.1 10.9 30 33-63 2-32 (317)
339 TIGR01850 argC N-acetyl-gamma- 90.8 1.1 2.3E-05 42.1 7.9 96 33-158 2-100 (346)
340 PRK07774 short chain dehydroge 90.8 1 2.2E-05 39.1 7.4 35 28-63 3-38 (250)
341 PRK09330 cell division protein 90.8 1 2.2E-05 43.0 7.7 37 29-65 11-49 (384)
342 PRK12384 sorbitol-6-phosphate 90.7 1.8 3.9E-05 38.0 9.0 32 31-63 2-34 (259)
343 TIGR01692 HIBADH 3-hydroxyisob 90.7 0.41 8.9E-06 43.5 5.0 110 36-161 1-119 (288)
344 PRK08085 gluconate 5-dehydroge 90.7 0.86 1.9E-05 39.9 6.9 34 29-63 7-41 (254)
345 PRK05855 short chain dehydroge 90.7 0.68 1.5E-05 45.5 6.9 41 22-63 306-347 (582)
346 PLN02214 cinnamoyl-CoA reducta 90.7 3.7 8E-05 38.1 11.4 33 29-62 8-41 (342)
347 TIGR01316 gltA glutamate synth 90.6 2 4.3E-05 41.6 9.9 35 29-64 131-165 (449)
348 KOG0409 Predicted dehydrogenas 90.6 0.87 1.9E-05 41.8 6.8 141 6-162 7-160 (327)
349 PRK15438 erythronate-4-phospha 90.6 0.32 6.9E-06 46.2 4.2 35 28-63 113-147 (378)
350 PRK08306 dipicolinate synthase 90.6 0.38 8.2E-06 44.1 4.6 34 29-63 150-183 (296)
351 PLN02989 cinnamyl-alcohol dehy 90.5 5 0.00011 36.6 12.0 31 31-62 5-36 (325)
352 COG1712 Predicted dinucleotide 90.5 0.72 1.6E-05 40.6 5.9 118 33-164 2-128 (255)
353 PRK12809 putative oxidoreducta 90.5 2.1 4.5E-05 43.5 10.3 34 30-64 309-342 (639)
354 PRK12409 D-amino acid dehydrog 90.5 0.46 1E-05 45.1 5.3 33 32-65 2-34 (410)
355 PRK15076 alpha-galactosidase; 90.5 1.6 3.6E-05 42.2 9.1 108 32-166 2-119 (431)
356 PLN02253 xanthoxin dehydrogena 90.5 1.2 2.5E-05 39.7 7.6 35 28-63 15-50 (280)
357 PRK06198 short chain dehydroge 90.5 1 2.2E-05 39.5 7.2 36 28-63 3-39 (260)
358 PRK07109 short chain dehydroge 90.4 1 2.2E-05 41.8 7.4 35 28-63 5-40 (334)
359 PRK06487 glycerate dehydrogena 90.4 0.33 7.2E-06 44.9 4.1 36 27-63 144-179 (317)
360 PRK12480 D-lactate dehydrogena 90.4 0.36 7.7E-06 45.0 4.3 36 27-63 142-177 (330)
361 PTZ00188 adrenodoxin reductase 90.4 1.9 4.2E-05 42.4 9.5 95 30-134 38-137 (506)
362 cd05197 GH4_glycoside_hydrolas 90.4 2 4.3E-05 41.5 9.5 107 33-166 2-115 (425)
363 PRK07326 short chain dehydroge 90.3 1.4 3E-05 38.0 7.8 34 29-63 4-38 (237)
364 PLN02572 UDP-sulfoquinovose sy 90.3 0.89 1.9E-05 44.0 7.1 36 27-63 43-79 (442)
365 PRK11259 solA N-methyltryptoph 90.3 0.38 8.3E-06 44.8 4.5 35 31-66 3-37 (376)
366 PRK06914 short chain dehydroge 90.3 1.5 3.2E-05 39.1 8.1 33 30-63 2-35 (280)
367 PRK08374 homoserine dehydrogen 90.3 2.7 5.9E-05 39.2 10.1 21 32-52 3-23 (336)
368 PRK07102 short chain dehydroge 90.2 1.9 4.1E-05 37.5 8.6 31 32-63 2-33 (243)
369 PF01370 Epimerase: NAD depend 90.2 2.5 5.3E-05 36.2 9.2 25 34-58 1-26 (236)
370 PLN02657 3,8-divinyl protochlo 90.2 2.2 4.8E-05 40.6 9.6 33 30-63 59-92 (390)
371 PRK00257 erythronate-4-phospha 90.2 0.37 7.9E-06 45.9 4.2 36 27-63 112-147 (381)
372 PRK08862 short chain dehydroge 90.2 1.1 2.4E-05 39.1 7.0 34 29-63 3-37 (227)
373 PRK12827 short chain dehydroge 90.2 1.4 3.1E-05 38.0 7.8 34 29-63 4-38 (249)
374 PF05368 NmrA: NmrA-like famil 90.2 3.8 8.1E-05 35.5 10.4 96 34-160 1-104 (233)
375 PF02423 OCD_Mu_crystall: Orni 90.1 1.4 3E-05 40.7 8.0 76 31-135 128-204 (313)
376 PRK05786 fabG 3-ketoacyl-(acyl 90.1 1.8 3.9E-05 37.3 8.4 34 29-63 3-37 (238)
377 PRK08945 putative oxoacyl-(acy 90.1 1.4 3.1E-05 38.3 7.8 37 27-64 8-45 (247)
378 PRK14806 bifunctional cyclohex 90.1 2 4.2E-05 44.4 9.8 32 32-63 4-36 (735)
379 PF01266 DAO: FAD dependent ox 90.1 0.49 1.1E-05 43.1 5.0 35 33-68 1-35 (358)
380 PRK05335 tRNA (uracil-5-)-meth 90.0 0.44 9.4E-06 46.1 4.6 32 31-63 2-33 (436)
381 PRK04663 murD UDP-N-acetylmura 90.0 1.7 3.6E-05 42.0 8.8 36 28-63 3-40 (438)
382 TIGR03451 mycoS_dep_FDH mycoth 90.0 1.9 4.2E-05 40.0 9.0 33 31-63 177-209 (358)
383 PRK13018 cell division protein 90.0 2.3 5E-05 40.4 9.4 37 29-65 26-64 (378)
384 PRK09987 dTDP-4-dehydrorhamnos 90.0 2.5 5.4E-05 38.4 9.4 104 33-163 2-109 (299)
385 TIGR01832 kduD 2-deoxy-D-gluco 89.9 1.1 2.4E-05 38.9 6.9 34 29-63 3-37 (248)
386 PRK10217 dTDP-glucose 4,6-dehy 89.9 3.3 7.2E-05 38.2 10.4 32 32-63 2-34 (355)
387 PRK06932 glycerate dehydrogena 89.8 0.34 7.3E-06 44.9 3.6 36 27-63 143-178 (314)
388 PRK07024 short chain dehydroge 89.8 1.4 3.1E-05 38.7 7.5 33 31-64 2-35 (257)
389 PLN02653 GDP-mannose 4,6-dehyd 89.8 1.3 2.9E-05 40.8 7.6 34 29-63 4-38 (340)
390 cd05313 NAD_bind_2_Glu_DH NAD( 89.7 2.6 5.6E-05 37.9 9.1 37 27-63 34-70 (254)
391 TIGR00036 dapB dihydrodipicoli 89.7 1.4 3E-05 39.7 7.5 31 32-62 2-34 (266)
392 PRK08703 short chain dehydroge 89.7 1.9 4.1E-05 37.3 8.2 35 28-63 3-38 (239)
393 PRK08643 acetoin reductase; Va 89.6 1.5 3.2E-05 38.4 7.5 32 31-63 2-34 (256)
394 PRK08594 enoyl-(acyl carrier p 89.6 2 4.2E-05 38.1 8.3 34 29-63 5-41 (257)
395 PLN02858 fructose-bisphosphate 89.6 1.9 4E-05 47.8 9.6 115 31-161 4-129 (1378)
396 PLN02166 dTDP-glucose 4,6-dehy 89.5 2.8 6E-05 40.6 9.8 33 30-63 119-152 (436)
397 PRK06196 oxidoreductase; Provi 89.5 1.5 3.2E-05 40.1 7.6 35 28-63 23-58 (315)
398 TIGR01377 soxA_mon sarcosine o 89.5 0.5 1.1E-05 44.1 4.6 33 33-66 2-34 (380)
399 KOG0024 Sorbitol dehydrogenase 89.4 1.2 2.6E-05 41.3 6.7 34 30-63 169-202 (354)
400 PRK11154 fadJ multifunctional 89.4 2.3 5.1E-05 43.8 9.7 32 32-64 310-342 (708)
401 PRK06113 7-alpha-hydroxysteroi 89.4 0.98 2.1E-05 39.6 6.2 35 28-63 8-43 (255)
402 PRK07589 ornithine cyclodeamin 89.3 2.1 4.6E-05 40.2 8.6 75 31-134 129-204 (346)
403 PF13738 Pyr_redox_3: Pyridine 89.3 0.4 8.6E-06 40.5 3.5 36 27-63 163-198 (203)
404 PF03721 UDPG_MGDP_dh_N: UDP-g 89.3 0.35 7.5E-06 41.3 3.0 84 32-133 1-86 (185)
405 PLN00141 Tic62-NAD(P)-related 89.2 5.4 0.00012 35.0 10.8 33 28-61 14-47 (251)
406 PRK05872 short chain dehydroge 89.2 1.9 4E-05 39.1 8.0 35 28-63 6-41 (296)
407 TIGR03364 HpnW_proposed FAD de 89.2 0.69 1.5E-05 43.0 5.3 35 33-68 2-36 (365)
408 PLN02968 Probable N-acetyl-gam 89.1 2.3 4.9E-05 40.6 8.7 98 30-158 37-135 (381)
409 PRK06124 gluconate 5-dehydroge 89.1 1.1 2.4E-05 39.2 6.3 36 28-64 8-44 (256)
410 COG1091 RfbD dTDP-4-dehydrorha 89.1 2.8 6.1E-05 38.2 8.9 95 33-158 2-100 (281)
411 PRK00377 cbiT cobalt-precorrin 89.0 6 0.00013 33.7 10.6 94 30-146 40-134 (198)
412 PTZ00075 Adenosylhomocysteinas 89.0 0.59 1.3E-05 45.7 4.7 36 28-64 251-286 (476)
413 PRK05650 short chain dehydroge 89.0 1.5 3.2E-05 38.9 7.1 30 33-63 2-32 (270)
414 cd08239 THR_DH_like L-threonin 89.0 3 6.5E-05 38.2 9.3 34 30-63 163-196 (339)
415 PRK12810 gltD glutamate syntha 89.0 2.7 5.8E-05 41.0 9.4 34 30-64 142-175 (471)
416 PRK11873 arsM arsenite S-adeno 89.0 3.1 6.8E-05 37.2 9.2 33 30-63 77-110 (272)
417 TIGR01318 gltD_gamma_fam gluta 88.9 2.6 5.6E-05 41.1 9.3 34 30-64 140-173 (467)
418 COG1062 AdhC Zn-dependent alco 88.9 3.3 7.2E-05 38.7 9.3 90 30-147 185-278 (366)
419 TIGR01087 murD UDP-N-acetylmur 88.9 2.5 5.3E-05 40.6 9.0 30 33-63 1-30 (433)
420 PLN02695 GDP-D-mannose-3',5'-e 88.9 3.2 7E-05 39.0 9.6 33 30-63 20-53 (370)
421 PRK07074 short chain dehydroge 88.9 2.1 4.6E-05 37.4 8.0 32 31-63 2-34 (257)
422 PF04321 RmlD_sub_bind: RmlD s 88.9 0.78 1.7E-05 41.7 5.2 100 33-162 2-105 (286)
423 PF01494 FAD_binding_3: FAD bi 88.8 0.53 1.2E-05 42.8 4.2 34 32-66 2-35 (356)
424 PRK09126 hypothetical protein; 88.8 0.54 1.2E-05 44.2 4.3 36 30-66 2-37 (392)
425 PRK08628 short chain dehydroge 88.8 1.6 3.5E-05 38.2 7.1 35 28-63 4-39 (258)
426 PRK07097 gluconate 5-dehydroge 88.8 1.4 3E-05 38.9 6.8 35 28-63 7-42 (265)
427 PRK07890 short chain dehydroge 88.8 1.3 2.9E-05 38.7 6.5 34 29-63 3-37 (258)
428 PLN02172 flavin-containing mon 88.8 0.57 1.2E-05 45.7 4.5 36 27-63 6-41 (461)
429 PRK11749 dihydropyrimidine deh 88.7 2.4 5.1E-05 41.1 8.8 34 30-64 139-172 (457)
430 PRK12778 putative bifunctional 88.7 2.4 5.2E-05 44.0 9.3 60 4-64 400-463 (752)
431 PRK00517 prmA ribosomal protei 88.7 8.2 0.00018 34.2 11.6 32 30-63 119-150 (250)
432 PRK08125 bifunctional UDP-gluc 88.7 4.4 9.6E-05 41.3 11.1 41 23-63 307-348 (660)
433 PRK14031 glutamate dehydrogena 88.7 2.3 5E-05 41.3 8.5 36 28-63 225-260 (444)
434 PF03059 NAS: Nicotianamine sy 88.7 1.3 2.8E-05 40.3 6.4 109 32-166 122-239 (276)
435 PLN02650 dihydroflavonol-4-red 88.6 6.6 0.00014 36.3 11.5 32 31-63 5-37 (351)
436 PRK06184 hypothetical protein; 88.6 0.59 1.3E-05 45.8 4.5 34 30-64 2-35 (502)
437 cd02201 FtsZ_type1 FtsZ is a G 88.6 2.1 4.5E-05 39.4 7.9 33 33-65 2-36 (304)
438 PRK06523 short chain dehydroge 88.6 1.3 2.8E-05 38.8 6.4 36 28-64 6-42 (260)
439 PRK08264 short chain dehydroge 88.6 0.63 1.4E-05 40.3 4.3 36 29-64 4-40 (238)
440 PRK06823 ornithine cyclodeamin 88.5 2.7 5.8E-05 39.0 8.6 77 30-135 127-204 (315)
441 cd00401 AdoHcyase S-adenosyl-L 88.5 0.63 1.4E-05 44.7 4.5 34 29-63 200-233 (413)
442 TIGR01472 gmd GDP-mannose 4,6- 88.5 3.9 8.4E-05 37.7 9.8 31 32-63 1-32 (343)
443 PRK09853 putative selenate red 88.5 1.7 3.7E-05 46.4 8.1 34 30-64 538-571 (1019)
444 PRK07236 hypothetical protein; 88.4 0.65 1.4E-05 43.8 4.6 36 29-65 4-39 (386)
445 COG0345 ProC Pyrroline-5-carbo 88.4 5.1 0.00011 36.2 10.0 78 32-143 2-82 (266)
446 PRK08324 short chain dehydroge 88.3 4.2 9.1E-05 41.7 10.6 34 29-63 420-454 (681)
447 cd08281 liver_ADH_like1 Zinc-d 88.3 3.1 6.7E-05 38.9 9.0 33 31-63 192-224 (371)
448 TIGR01082 murC UDP-N-acetylmur 88.3 2.9 6.3E-05 40.4 9.1 30 33-63 1-31 (448)
449 PLN02775 Probable dihydrodipic 88.2 2.5 5.4E-05 38.6 8.0 117 32-161 12-138 (286)
450 PRK03806 murD UDP-N-acetylmura 88.2 3.6 7.7E-05 39.6 9.6 35 29-64 4-38 (438)
451 PRK07067 sorbitol dehydrogenas 88.2 0.88 1.9E-05 39.9 5.0 36 29-65 4-40 (257)
452 PRK00436 argC N-acetyl-gamma-g 88.2 2.5 5.4E-05 39.6 8.3 31 32-62 3-35 (343)
453 TIGR03366 HpnZ_proposed putati 88.1 3.8 8.2E-05 36.7 9.2 34 30-63 120-153 (280)
454 PRK08416 7-alpha-hydroxysteroi 88.0 2.8 6E-05 37.0 8.1 34 28-62 5-39 (260)
455 PRK11101 glpA sn-glycerol-3-ph 88.0 0.86 1.9E-05 45.4 5.3 36 31-67 6-41 (546)
456 PRK06270 homoserine dehydrogen 88.0 4.6 9.9E-05 37.8 9.9 22 32-53 3-24 (341)
457 PRK07494 2-octaprenyl-6-methox 87.9 0.64 1.4E-05 43.7 4.2 34 31-65 7-40 (388)
458 PRK11790 D-3-phosphoglycerate 87.9 0.54 1.2E-05 45.2 3.7 36 27-63 147-182 (409)
459 PRK13984 putative oxidoreducta 87.9 3 6.5E-05 42.0 9.2 35 30-65 282-316 (604)
460 KOG1502 Flavonol reductase/cin 87.8 2.7 5.8E-05 39.2 8.0 110 30-164 5-135 (327)
461 cd08237 ribitol-5-phosphate_DH 87.8 3.1 6.6E-05 38.5 8.6 33 31-63 164-197 (341)
462 PRK09754 phenylpropionate diox 87.8 0.78 1.7E-05 43.5 4.7 37 29-65 1-38 (396)
463 PRK05557 fabG 3-ketoacyl-(acyl 87.8 2.4 5.1E-05 36.5 7.4 32 29-61 3-35 (248)
464 PRK01368 murD UDP-N-acetylmura 87.7 2.5 5.4E-05 41.1 8.2 32 30-63 5-36 (454)
465 PF01564 Spermine_synth: Sperm 87.7 0.2 4.3E-06 44.7 0.6 55 6-63 54-108 (246)
466 PRK07677 short chain dehydroge 87.7 1.7 3.8E-05 38.0 6.6 33 31-64 1-34 (252)
467 PRK13529 malate dehydrogenase; 87.7 0.55 1.2E-05 46.7 3.6 55 11-65 257-339 (563)
468 PLN02858 fructose-bisphosphate 87.7 3 6.5E-05 46.2 9.6 117 31-161 324-449 (1378)
469 TIGR03315 Se_ygfK putative sel 87.7 3.2 6.9E-05 44.4 9.5 35 30-65 536-570 (1012)
470 PRK15182 Vi polysaccharide bio 87.7 4.5 9.8E-05 39.1 9.9 39 32-72 7-45 (425)
471 PRK13581 D-3-phosphoglycerate 87.6 0.64 1.4E-05 46.2 4.1 36 27-63 136-171 (526)
472 PF02629 CoA_binding: CoA bind 87.6 2.7 5.9E-05 31.5 6.7 34 30-63 2-36 (96)
473 TIGR01963 PHB_DH 3-hydroxybuty 87.6 2.3 4.9E-05 37.0 7.3 32 32-64 2-34 (255)
474 PRK06407 ornithine cyclodeamin 87.6 3.1 6.8E-05 38.2 8.4 78 30-135 116-194 (301)
475 TIGR00417 speE spermidine synt 87.6 2.7 5.8E-05 37.9 7.8 50 10-63 54-104 (270)
476 PRK14192 bifunctional 5,10-met 87.6 0.68 1.5E-05 42.3 3.9 35 28-63 156-191 (283)
477 PRK08013 oxidoreductase; Provi 87.5 0.68 1.5E-05 43.9 4.1 35 30-65 2-36 (400)
478 PRK12743 oxidoreductase; Provi 87.5 2.5 5.5E-05 37.0 7.6 31 31-62 2-33 (256)
479 cd05297 GH4_alpha_glucosidase_ 87.5 1.8 3.9E-05 41.8 7.0 73 33-132 2-83 (423)
480 PRK12938 acetyacetyl-CoA reduc 87.5 2.1 4.6E-05 37.1 7.0 31 29-60 1-32 (246)
481 PLN02494 adenosylhomocysteinas 87.5 0.84 1.8E-05 44.6 4.7 36 29-65 252-287 (477)
482 PF00670 AdoHcyase_NAD: S-aden 87.4 0.7 1.5E-05 38.6 3.6 39 27-66 19-57 (162)
483 TIGR02437 FadB fatty oxidation 87.4 0.93 2E-05 46.7 5.3 32 32-64 314-345 (714)
484 PRK09291 short chain dehydroge 87.4 2.7 5.9E-05 36.6 7.7 31 31-62 2-33 (257)
485 PTZ00317 NADP-dependent malic 87.4 0.64 1.4E-05 46.1 3.9 55 11-65 259-341 (559)
486 TIGR03329 Phn_aa_oxid putative 87.3 0.94 2E-05 43.9 5.1 43 31-74 24-68 (460)
487 TIGR00137 gid_trmFO tRNA:m(5)U 87.3 0.85 1.8E-05 44.1 4.6 32 32-64 1-32 (433)
488 PRK07791 short chain dehydroge 87.3 2.7 5.9E-05 37.8 7.8 35 28-63 3-38 (286)
489 PF00743 FMO-like: Flavin-bind 87.3 0.9 2E-05 45.2 4.9 32 31-63 1-32 (531)
490 PRK08849 2-octaprenyl-3-methyl 87.3 0.84 1.8E-05 43.0 4.6 34 31-65 3-36 (384)
491 PLN02366 spermidine synthase 87.2 1.4 3E-05 40.8 5.8 55 6-64 69-124 (308)
492 PRK06114 short chain dehydroge 87.2 2.1 4.5E-05 37.5 6.8 35 28-63 5-40 (254)
493 TIGR01214 rmlD dTDP-4-dehydror 87.2 6.6 0.00014 34.9 10.2 30 33-63 1-31 (287)
494 PRK06185 hypothetical protein; 87.2 0.86 1.9E-05 43.1 4.6 35 30-65 5-39 (407)
495 PRK08850 2-octaprenyl-6-methox 87.2 0.74 1.6E-05 43.7 4.2 34 30-64 3-36 (405)
496 smart00846 Gp_dh_N Glyceraldeh 87.2 0.83 1.8E-05 37.6 3.9 105 33-145 2-109 (149)
497 COG2910 Putative NADH-flavin r 87.2 8.2 0.00018 33.2 9.8 102 32-170 1-114 (211)
498 PRK12744 short chain dehydroge 87.2 2.6 5.7E-05 37.0 7.4 33 28-60 5-38 (257)
499 PLN02740 Alcohol dehydrogenase 87.2 4.2 9E-05 38.3 9.2 33 31-63 199-231 (381)
500 TIGR01746 Thioester-redct thio 87.1 7 0.00015 35.6 10.6 30 33-62 1-32 (367)
No 1
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-59 Score=411.27 Aligned_cols=269 Identities=52% Similarity=0.766 Sum_probs=246.3
Q ss_pred CCCCCCCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCC
Q 023036 1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80 (288)
Q Consensus 1 ~~~~~l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~ 80 (288)
|++++||++|.+.|||||||||.++|++|+++||||+|.+|+|+|++|||+|+||+++|++|+..|+++|++.|||+..+
T Consensus 1 m~~~else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~ 80 (331)
T KOG2014|consen 1 MKGEELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS 80 (331)
T ss_pred CchhhhhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 81 di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
++ |++||+++.++++.+||.|++....+++.+.+++||.+||+||.+..+.+....+|++||+ .+++|+.++++|
T Consensus 81 ~v---g~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk--~~i~F~a~d~~g 155 (331)
T KOG2014|consen 81 SV---GQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRK--LNIAFYAGDCFG 155 (331)
T ss_pred hh---chHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHh--cCceEEeccccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ceEEEEEEcCCeeeecCCC-----------------CccceeeecCCChhhhhcCCCc---C-CCCCchhHHHHHHHHHH
Q 023036 161 SCGEIFVDLQNHKYSKQKI-----------------EETIECQLRYPSFEEAISVPWR---A-LPRKASKLYFALRVLEQ 219 (288)
Q Consensus 161 ~~G~v~~d~~~~~~~~~~~-----------------~~~~~~~~~f~~l~~~~~~~~~---~-~~~~~~~~~~~~~aL~~ 219 (288)
++||+|+|+++|.|.+.+- ++.+.+...|||++|+++.+|. + .++|..++++++.++..
T Consensus 156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~ 235 (331)
T KOG2014|consen 156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK 235 (331)
T ss_pred eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence 9999999999999886410 1123456799999999999995 2 24677889999999999
Q ss_pred HHHHhCCCCCCCCcchHHHHHHHHHHHHHhcC-----------------CCcchhhhhhhHHHHHHHhhccc
Q 023036 220 FEEAEGRSPGEISIADLPAVLKLKKELCEANV-----------------RNFKLVFVCIIGCLVIKLQSCCT 274 (288)
Q Consensus 220 f~~~~~~~P~~~~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~~~~~i~~~~~~~ 274 (288)
|++.+++.|+....+|.+.+..+.++.++..+ -+..+++||++||||||++|++-
T Consensus 236 f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~ 307 (331)
T KOG2014|consen 236 FRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKG 307 (331)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCC
Confidence 99999999986678899999999999987322 23367799999999999999863
No 2
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-54 Score=417.23 Aligned_cols=259 Identities=31% Similarity=0.477 Sum_probs=239.4
Q ss_pred HHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC
Q 023036 8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK 87 (288)
Q Consensus 8 ~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~ 87 (288)
+.++.+|+||+++.|.++++||..++|||.|++|+|.||||||+|+||+++||.|+..+..+||+.|||++++|| |+
T Consensus 14 ~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk 90 (1013)
T KOG2012|consen 14 EIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK 90 (1013)
T ss_pred hhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence 667899999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036 88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 88 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~ 167 (288)
+||++..++|++||++|.|.+++..+ +.+++++|++||.|..+.+...+|+++||+ ++|.||.+.+.|++|++||
T Consensus 91 nRA~as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fch~--~~i~fi~ad~RGLfg~lFC 165 (1013)
T KOG2012|consen 91 NRAEASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFCHS--HGIAFIAADTRGLFGQLFC 165 (1013)
T ss_pred chHHHHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHHHh--cCeEEEEeccchhhhhhhc
Confidence 99999999999999999999998764 478999999999999999999999999999 9999999999999999999
Q ss_pred EcCC-eeeecCCCCc-----------------------------------------------------------------
Q 023036 168 DLQN-HKYSKQKIEE----------------------------------------------------------------- 181 (288)
Q Consensus 168 d~~~-~~~~~~~~~~----------------------------------------------------------------- 181 (288)
|||+ |++.|.+|++
T Consensus 166 DFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt 245 (1013)
T KOG2012|consen 166 DFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDT 245 (1013)
T ss_pred cCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEeccc
Confidence 9996 9999988764
Q ss_pred ---------------cceeeecCCChhhhhcCC------CcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHHH
Q 023036 182 ---------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240 (288)
Q Consensus 182 ---------------~~~~~~~f~~l~~~~~~~------~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~~ 240 (288)
+.|++++|+||.+.+..| ++++ .|++.+|.+|+||++|+++|||+|.+++++|+++|.
T Consensus 246 ~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~-~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~ 324 (1013)
T KOG2012|consen 246 TEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKF-DRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELV 324 (1013)
T ss_pred cchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccc-cccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHH
Confidence 356789999999999665 4555 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCCc-----------------chhhhhhhHHHHHHHhhcccc
Q 023036 241 KLKKELCEAN----VRNF-----------------KLVFVCIIGCLVIKLQSCCTL 275 (288)
Q Consensus 241 ~~~~~~~~~~----~~~~-----------------~~~~g~~~~~~~i~~~~~~~~ 275 (288)
++++++.+.. .++. .+++||++|||++||.|+++-
T Consensus 325 ~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~ 380 (1013)
T KOG2012|consen 325 ELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFT 380 (1013)
T ss_pred HHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCcc
Confidence 9999998752 2222 455999999999999999874
No 3
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.1e-52 Score=431.51 Aligned_cols=259 Identities=30% Similarity=0.443 Sum_probs=233.7
Q ss_pred HHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036 9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (288)
Q Consensus 9 ~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~ 88 (288)
.|.++|||||++||.++|+||++++|||+|+||+|+|+||||+++|||+|+|+|++.|+.+||+||||++++|| |++
T Consensus 2 id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~ 78 (1008)
T TIGR01408 2 IDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRN 78 (1008)
T ss_pred chHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---Cch
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC--ceEEEEeeecceEEEE
Q 023036 89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--VAFYTVDCRDSCGEIF 166 (288)
Q Consensus 89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~--ip~i~~~~~G~~G~v~ 166 (288)
||++++++|+++||+|+|+++...+ +.+++++||+||+|.++.+.+..+|++||+ ++ +|||.+++.|++|++|
T Consensus 79 Kaea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~t~~~~~~~~~in~~cr~--~~~~I~fI~~~~~G~~G~vf 153 (1008)
T TIGR01408 79 RAEAVVKKLAELNPYVHVSSSSVPF---NEEFLDKFQCVVLTEMSLPLQKEINDFCHS--QCPPIAFISADVRGLFGSLF 153 (1008)
T ss_pred HHHHHHHHHHHHCCCceEEEecccC---CHHHHcCCCEEEECCCCHHHHHHHHHHHHH--cCCCeEEEEEeecceEEEEE
Confidence 9999999999999999999998755 467999999999999999999999999999 88 9999999999999999
Q ss_pred EEcCC-eeeecCCCCc----------------------------------------------------------------
Q 023036 167 VDLQN-HKYSKQKIEE---------------------------------------------------------------- 181 (288)
Q Consensus 167 ~d~~~-~~~~~~~~~~---------------------------------------------------------------- 181 (288)
+|||+ |.+.+++|++
T Consensus 154 ~D~g~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~d 233 (1008)
T TIGR01408 154 CDFGDEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGD 233 (1008)
T ss_pred ecCCCceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEecc
Confidence 99997 7888765421
Q ss_pred ----------------cceeeecCCChhhhhcCC------CcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHH
Q 023036 182 ----------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239 (288)
Q Consensus 182 ----------------~~~~~~~f~~l~~~~~~~------~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~ 239 (288)
+.+.++.|++|.+.+..| |.++ .+++.+|++++||++|+++||++|.+++.+|++++
T Consensus 234 t~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~-~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~ 312 (1008)
T TIGR01408 234 TTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKP-ERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEEL 312 (1008)
T ss_pred ccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhc-CCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 013456899999988765 7776 58899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-----C-----------------cchhhhhhhHHHHHHHhhccccc
Q 023036 240 LKLKKELCEANVR-----N-----------------FKLVFVCIIGCLVIKLQSCCTLL 276 (288)
Q Consensus 240 ~~~~~~~~~~~~~-----~-----------------~~~~~g~~~~~~~i~~~~~~~~~ 276 (288)
.++++++.++.+. + ...++||++||||||++|+++..
T Consensus 313 ~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~P 371 (1008)
T TIGR01408 313 LKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSP 371 (1008)
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCC
Confidence 9999999876542 1 23459999999999999999854
No 4
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=5.1e-50 Score=380.02 Aligned_cols=230 Identities=25% Similarity=0.431 Sum_probs=208.8
Q ss_pred HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (288)
Q Consensus 12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~ 91 (288)
+|||||+||||.++|++|++++|||+|+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+ |++||+
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~ 77 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE 77 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEE
Q 023036 92 VCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168 (288)
Q Consensus 92 ~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d 168 (288)
+++++|+++||+|+++.+.+.+++ ...+++++||+||+|.++......++++|++ +++|+|.+++.|++|+++++
T Consensus 78 ~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~--~~iPlI~~~s~G~~G~v~v~ 155 (425)
T cd01493 78 ATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWS--ANIPLLYVRSYGLYGYIRIQ 155 (425)
T ss_pred HHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEecccCEEEEEEE
Confidence 999999999999999999887653 3478999999999999999899999999999 99999999999999999999
Q ss_pred cCCeeeecCCCCcc-ceeee--cCCChhhhh-cCCCcCCC----CCchhHHHHHHHHHHHHHHhC-CCCCCCCcchHHHH
Q 023036 169 LQNHKYSKQKIEET-IECQL--RYPSFEEAI-SVPWRALP----RKASKLYFALRVLEQFEEAEG-RSPGEISIADLPAV 239 (288)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~--~f~~l~~~~-~~~~~~~~----~~~~~~~~~~~aL~~f~~~~~-~~P~~~~~~d~~~~ 239 (288)
+++|.+++++++.. .+.++ |||+|.++. +.+++.++ +|+|++.+++++|++|+..|+ .+|. +.+|.++|
T Consensus 156 ~~~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~--~~~ek~~f 233 (425)
T cd01493 156 LKEHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPS--TYKEKKEF 233 (425)
T ss_pred ECCeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHH
Confidence 99999999987653 33344 999999987 56777764 589999999999999999995 5554 57899999
Q ss_pred HHHHHHHHH
Q 023036 240 LKLKKELCE 248 (288)
Q Consensus 240 ~~~~~~~~~ 248 (288)
++++.+..+
T Consensus 234 ~~~i~~~~~ 242 (425)
T cd01493 234 RDLVRSLMR 242 (425)
T ss_pred HHHHHHhcc
Confidence 998877665
No 5
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=3e-46 Score=337.34 Aligned_cols=161 Identities=35% Similarity=0.539 Sum_probs=153.9
Q ss_pred hhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHH
Q 023036 13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92 (288)
Q Consensus 13 rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~ 92 (288)
+||||+++||.++|+||++++|+|+|+||+|+|+||||+++||++|+|+|+|.++.+||+||||++++|+ |++||++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea 77 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEA 77 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC-
Q 023036 93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN- 171 (288)
Q Consensus 93 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~- 171 (288)
++++|+++||+|+|+++... .+++++++||+||+|.++.+.+..+|++||+ +++|||.+++.|++|++|+|+|+
T Consensus 78 ~~~~L~eLNp~V~V~~~~~~---~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~--~~ipfI~a~~~G~~G~vf~dfg~~ 152 (286)
T cd01491 78 SQARLAELNPYVPVTVSTGP---LTTDELLKFQVVVLTDASLEDQLKINEFCHS--PGIKFISADTRGLFGSIFCDFGDE 152 (286)
T ss_pred HHHHHHHHCCCCEEEEEecc---CCHHHHhcCCEEEEecCCHHHHHHHHHHHHH--cCCEEEEEeccccEEEEEecCCCe
Confidence 99999999999999999865 3568899999999999999999999999999 99999999999999999999997
Q ss_pred eeeecCCCCc
Q 023036 172 HKYSKQKIEE 181 (288)
Q Consensus 172 ~~~~~~~~~~ 181 (288)
|.+.|.++++
T Consensus 153 f~~~d~~ge~ 162 (286)
T cd01491 153 FTVYDPNGEE 162 (286)
T ss_pred EEEeCCCCCc
Confidence 8888877765
No 6
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=5.7e-44 Score=308.20 Aligned_cols=153 Identities=49% Similarity=0.790 Sum_probs=147.6
Q ss_pred HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (288)
Q Consensus 12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~ 91 (288)
+|||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++||||++++|+ |++|++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~ 78 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE 78 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036 92 VCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (288)
Q Consensus 92 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~ 169 (288)
+++++|+++||+++++.+...+.+..++++++||+||+|.++.+.+..++++|++ +++|||.+++.|++|++|+|+
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~d~ 154 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRK--LGVKFYATGVHGLFGFVFADL 154 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecCCEEEEEEec
Confidence 9999999999999999998888766788999999999999999999999999999 999999999999999999654
No 7
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-44 Score=329.02 Aligned_cols=230 Identities=22% Similarity=0.370 Sum_probs=210.7
Q ss_pred HHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036 9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (288)
Q Consensus 9 ~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~ 88 (288)
+..++||||+|+||.+||..|..++||++|++++|+|++|||+++|||+||++|+..|..+|++.|||+..+++ |++
T Consensus 5 ~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---Gks 81 (523)
T KOG2016|consen 5 EPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKS 81 (523)
T ss_pred chhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036 89 IAEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (288)
Q Consensus 89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v 165 (288)
||++..+.|+++||+|......+..+. .+++|+++|++||.+..+.+...++.++||+ .++|++.+.++|+.|++
T Consensus 82 rA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~--~~vpll~~rs~Gl~G~i 159 (523)
T KOG2016|consen 82 RAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILRE--ANVPLLLTRSYGLAGTI 159 (523)
T ss_pred HHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHh--cCCceEEEeeecceEEE
Confidence 999999999999999998887776543 5689999999999999999999999999999 99999999999999999
Q ss_pred EEEcCCeeeecCCCCcc-ceeee--cCCChhhhh-cCCCcCCC----CCchhHHHHHHHHHHHHHHhC-CCCCCCCcchH
Q 023036 166 FVDLQNHKYSKQKIEET-IECQL--RYPSFEEAI-SVPWRALP----RKASKLYFALRVLEQFEEAEG-RSPGEISIADL 236 (288)
Q Consensus 166 ~~d~~~~~~~~~~~~~~-~~~~~--~f~~l~~~~-~~~~~~~~----~~~~~~~~~~~aL~~f~~~~~-~~P~~~~~~d~ 236 (288)
++...+|++++++|+.+ .+.++ |||.|.+++ +.+.+.|+ +|+|++.+++++|.+|+++|+ +.|. +.++.
T Consensus 160 RI~ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~--t~~ek 237 (523)
T KOG2016|consen 160 RISIKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPS--TYDEK 237 (523)
T ss_pred EEEeeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCc--cHHHH
Confidence 99999999999998765 44554 999999988 56777664 689999999999999999995 4774 67899
Q ss_pred HHHHHHHHH
Q 023036 237 PAVLKLKKE 245 (288)
Q Consensus 237 ~~~~~~~~~ 245 (288)
++|++++++
T Consensus 238 k~fkd~i~~ 246 (523)
T KOG2016|consen 238 KEFKDLIRS 246 (523)
T ss_pred HHHHHHHHh
Confidence 999988875
No 8
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1e-42 Score=300.73 Aligned_cols=152 Identities=34% Similarity=0.595 Sum_probs=144.4
Q ss_pred hhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCC--CccccCCCcHH
Q 023036 13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP--DENVYGGKTIA 90 (288)
Q Consensus 13 rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~--~di~~~G~~Ka 90 (288)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|++||||+++ +|+ |++|+
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 888 99999
Q ss_pred HHHHHHHhhhCCCceeeeeecCCC---CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036 91 EVCCDSLKDFNPMVRVSVEKGDLS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 91 ~~~~~~l~~lNp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~ 167 (288)
++++++|+++||+++++.+...+. +..++++++||+||+|.++.+.+..++++|++ +++|||.+++.|++|++|+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRK--HHIPFISCATYGLIGYAFF 155 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence 999999999999999999887764 34578899999999999999999999999999 9999999999999999996
Q ss_pred Ec
Q 023036 168 DL 169 (288)
Q Consensus 168 d~ 169 (288)
|+
T Consensus 156 ~~ 157 (198)
T cd01485 156 DF 157 (198)
T ss_pred ch
Confidence 64
No 9
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.5e-39 Score=288.20 Aligned_cols=159 Identities=24% Similarity=0.332 Sum_probs=151.4
Q ss_pred CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
+||++|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++++|+
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 6999999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++|+++++++|+++||+++++.+...+++. ..+++++||+||+|+|+.+.+..++++|++ +++|||.+++.|+
T Consensus 84 ---G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~ 158 (245)
T PRK05690 84 ---GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFA--AKKPLVSGAAIRM 158 (245)
T ss_pred ---CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHH--hCCEEEEeeeccC
Confidence 9999999999999999999999998887653 367899999999999999999999999999 9999999999999
Q ss_pred eEEEEEE
Q 023036 162 CGEIFVD 168 (288)
Q Consensus 162 ~G~v~~d 168 (288)
.|++.+-
T Consensus 159 ~G~v~~~ 165 (245)
T PRK05690 159 EGQVTVF 165 (245)
T ss_pred CceEEEE
Confidence 9998754
No 10
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.9e-39 Score=288.68 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=147.4
Q ss_pred HHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcH
Q 023036 10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI 89 (288)
Q Consensus 10 e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K 89 (288)
-.++|+||+.++|.++|+||++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++.+|+ |++|
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~K 82 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRPK 82 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCcH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCCh--hhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 90 AEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 90 a~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~--~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
+++++++|+++||+++|+++...+++. ..++++++|+||++.|++ +++..+|+.|++ +++|+|++++.|+.|++.
T Consensus 83 ve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g~~gqv~ 160 (287)
T PRK08223 83 AEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLGMGTALL 160 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccCCeEEEE
Confidence 999999999999999999999888753 478899999999999985 899999999999 999999999999999987
Q ss_pred EEcC
Q 023036 167 VDLQ 170 (288)
Q Consensus 167 ~d~~ 170 (288)
+-.+
T Consensus 161 v~~p 164 (287)
T PRK08223 161 VFDP 164 (287)
T ss_pred EEcC
Confidence 6553
No 11
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=279.43 Aligned_cols=160 Identities=24% Similarity=0.351 Sum_probs=150.7
Q ss_pred CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (288)
Q Consensus 6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~ 85 (288)
||+.|.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||++.++|+
T Consensus 2 l~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv--- 78 (231)
T PRK08328 2 LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL--- 78 (231)
T ss_pred CCHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036 86 GK-TIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (288)
Q Consensus 86 G~-~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G 163 (288)
|+ +|+++++++|+++||+++|+.+...+.+. ..++++++|+||+|.|+.+++..++++|++ +++|+|.+++.|++|
T Consensus 79 G~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~--~~ip~i~g~~~g~~G 156 (231)
T PRK08328 79 GKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHK--KGIPLVHGAVEGTYG 156 (231)
T ss_pred CchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeeccCEE
Confidence 99 59999999999999999999988777543 356889999999999999999999999999 999999999999999
Q ss_pred EEEEEcC
Q 023036 164 EIFVDLQ 170 (288)
Q Consensus 164 ~v~~d~~ 170 (288)
++++-.+
T Consensus 157 ~v~~~~p 163 (231)
T PRK08328 157 QVTTIVP 163 (231)
T ss_pred EEEEECC
Confidence 9986554
No 12
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.1e-38 Score=274.73 Aligned_cols=152 Identities=24% Similarity=0.366 Sum_probs=144.6
Q ss_pred hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036 13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (288)
Q Consensus 13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka 90 (288)
|||||+++ ||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++|||+++++|+ |++|+
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 79999999 99999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036 91 EVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (288)
Q Consensus 91 ~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~ 169 (288)
++++++|+++||+++++.+...+++. ..++++++|+||+|.|+.+.+..++++|++ +++|||.+++.|+.|++++-.
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~--~~ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVA--LGTPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccCeEEEEEEe
Confidence 99999999999999999998877653 356889999999999999999999999999 999999999999999998544
No 13
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.3e-37 Score=279.95 Aligned_cols=225 Identities=19% Similarity=0.225 Sum_probs=180.9
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
||+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+ |++||++++++|+++||+++++++...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc------CCCceEEEEeeecceEEEEEEcCCee-----eecCCCC-
Q 023036 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL------SKRVAFYTVDCRDSCGEIFVDLQNHK-----YSKQKIE- 180 (288)
Q Consensus 113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~------~~~ip~i~~~~~G~~G~v~~d~~~~~-----~~~~~~~- 180 (288)
+.+.+.+|+++||+||++.|+.++|..+|+.|.+. ..++|+|.+++.|+.|++++..++.+ ..+..++
T Consensus 78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~ 157 (291)
T cd01488 78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ 157 (291)
T ss_pred cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence 88878899999999999999999999999987552 13599999999999999999887532 2232222
Q ss_pred -ccceeee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHh-CCCCCCCCcchHHHHHHHHHHHHHhcCCCc---
Q 023036 181 -ETIECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAE-GRSPGEISIADLPAVLKLKKELCEANVRNF--- 254 (288)
Q Consensus 181 -~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~-~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~--- 254 (288)
..+.|++ +||+..+ +++.|++.- .|.+.+ +......+.++.+++++.+++.+++++++-
T Consensus 158 ~~~p~Cti~~~P~~~~-hci~~a~~~--------------~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~ 222 (291)
T cd01488 158 VTFPLCTIANTPRLPE-HCIEYASLI--------------QWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTY 222 (291)
T ss_pred CCCCcccccCCCCCcc-hheeeeeee--------------ecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 2334555 7777766 777887642 333332 222233455667778888888888776322
Q ss_pred -----------------chhhhhhhHHHHHHHhhcccc
Q 023036 255 -----------------KLVFVCIIGCLVIKLQSCCTL 275 (288)
Q Consensus 255 -----------------~~~~g~~~~~~~i~~~~~~~~ 275 (288)
.++++++++.|++|.++++..
T Consensus 223 ~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~ 260 (291)
T cd01488 223 SLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYE 260 (291)
T ss_pred HHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhcccc
Confidence 455788888888888887654
No 14
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=8.5e-38 Score=295.37 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=153.6
Q ss_pred CCCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc
Q 023036 4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE 81 (288)
Q Consensus 4 ~~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d 81 (288)
-+||+.|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|
T Consensus 9 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~d 88 (390)
T PRK07411 9 IQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSW 88 (390)
T ss_pred ccCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHH
Confidence 45899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 82 i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
+ |++||++++++|+++||.++|+++...++. ...++++++|+||+|+|+.+++..+|++|++ .++|+|++++.|
T Consensus 89 v---G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g 163 (390)
T PRK07411 89 V---GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVL--LNKPNVYGSIFR 163 (390)
T ss_pred C---CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEcc
Confidence 9 999999999999999999999999988875 3467899999999999999999999999999 999999999999
Q ss_pred ceEEEEEEc
Q 023036 161 SCGEIFVDL 169 (288)
Q Consensus 161 ~~G~v~~d~ 169 (288)
++|++.+..
T Consensus 164 ~~g~~~v~~ 172 (390)
T PRK07411 164 FEGQATVFN 172 (390)
T ss_pred CEEEEEEEC
Confidence 999988764
No 15
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=6.4e-38 Score=276.60 Aligned_cols=153 Identities=27% Similarity=0.388 Sum_probs=144.5
Q ss_pred hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036 13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (288)
Q Consensus 13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka 90 (288)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++|++||||+.++|+ |++|+
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 79999999 99999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (288)
Q Consensus 91 ~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~ 169 (288)
++++++|+++||+++++.+...++. ...++++++|+||+|.|+.+.+..++++|++ +++|+|.+++.|+.|++....
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVK--LGKPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEeccCEEEEEEEC
Confidence 9999999999999999999887753 3467889999999999999999999999999 999999999999999987554
Q ss_pred C
Q 023036 170 Q 170 (288)
Q Consensus 170 ~ 170 (288)
+
T Consensus 156 p 156 (228)
T cd00757 156 P 156 (228)
T ss_pred C
Confidence 4
No 16
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.3e-37 Score=294.54 Aligned_cols=159 Identities=25% Similarity=0.363 Sum_probs=151.9
Q ss_pred CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
+||++|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 14 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di 93 (392)
T PRK07878 14 ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV 93 (392)
T ss_pred CCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC
Confidence 5999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++||++++++|+++||+++|+++...++.. ..+++++||+||+|+|+...+..+|++|++ +++|||.+++.|+
T Consensus 94 ---G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g~ 168 (392)
T PRK07878 94 ---GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVL--AGKPYVWGSIYRF 168 (392)
T ss_pred ---CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence 9999999999999999999999998887653 467899999999999999999999999999 9999999999999
Q ss_pred eEEEEEE
Q 023036 162 CGEIFVD 168 (288)
Q Consensus 162 ~G~v~~d 168 (288)
+|++++.
T Consensus 169 ~G~v~~~ 175 (392)
T PRK07878 169 EGQASVF 175 (392)
T ss_pred EEEEEEE
Confidence 9998844
No 17
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.7e-37 Score=288.80 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=150.6
Q ss_pred CHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcccc
Q 023036 7 TEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY 84 (288)
Q Consensus 7 ~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~ 84 (288)
..+|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di-- 79 (355)
T PRK05597 2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV-- 79 (355)
T ss_pred ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC--
Confidence 45788999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036 85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (288)
Q Consensus 85 ~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G 163 (288)
|++|+++++++|+++||+++++++...++. ...++++++|+||+|+|+.+.+..+|++|++ +++|||.+++.|+.|
T Consensus 80 -G~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~--~~ip~v~~~~~g~~g 156 (355)
T PRK05597 80 -GQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAAR--LGIPHVWASILGFDA 156 (355)
T ss_pred -CChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecCeE
Confidence 999999999999999999999999887764 3467899999999999999999999999999 999999999999999
Q ss_pred EEEEEcC
Q 023036 164 EIFVDLQ 170 (288)
Q Consensus 164 ~v~~d~~ 170 (288)
++.+..+
T Consensus 157 ~v~~~~~ 163 (355)
T PRK05597 157 QLSVFHA 163 (355)
T ss_pred EEEEEcC
Confidence 9987653
No 18
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=2.2e-37 Score=290.19 Aligned_cols=160 Identities=26% Similarity=0.352 Sum_probs=152.3
Q ss_pred CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
+||++|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di 92 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV 92 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence 4889999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++||++++++|+++||+++++++...+++ ...++++++|+||+|+|+.+++..+|++|++ +++|+|++++.|+
T Consensus 93 ---G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~--~~iP~v~~~~~g~ 167 (370)
T PRK05600 93 ---GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRF 167 (370)
T ss_pred ---CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecC
Confidence 999999999999999999999999988875 3467899999999999999999999999999 9999999999999
Q ss_pred eEEEEEEc
Q 023036 162 CGEIFVDL 169 (288)
Q Consensus 162 ~G~v~~d~ 169 (288)
.|++.+..
T Consensus 168 ~G~v~v~~ 175 (370)
T PRK05600 168 HGELAVFN 175 (370)
T ss_pred EEEEEEEe
Confidence 99986543
No 19
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=3.1e-37 Score=273.81 Aligned_cols=151 Identities=25% Similarity=0.352 Sum_probs=143.2
Q ss_pred HHhhhhhhhhcc--HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036 11 TALYDRQIRVWG--ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT 88 (288)
Q Consensus 11 ~~rYdRqirl~G--~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~ 88 (288)
.+||+||+++|| .++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+ |++
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~ 78 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQP 78 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCc
Confidence 579999999975 799999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 89 IAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
||++++++|+++||+++++.+...+++ ...++++++|+||+|.|+.+.+..+|++|++ +++|||.+++.|+.|++.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~~G~v~ 155 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFA--AKVPLVSGAAIRMEGQVS 155 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEeEEE
Confidence 999999999999999999999888765 3467899999999999999999999999999 999999999999999875
No 20
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=6.5e-36 Score=263.58 Aligned_cols=214 Identities=15% Similarity=0.211 Sum_probs=170.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
||+|+|+||+|+|++|+|+++|+|+|+|+|+|.|+.+||+||||++++|+ |++||++++++++++||+++++.+...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999888
Q ss_pred CC---CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCCe--eeecC---CCCccce
Q 023036 113 LS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH--KYSKQ---KIEETIE 184 (288)
Q Consensus 113 ~~---~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~~--~~~~~---~~~~~~~ 184 (288)
+. +.+++|+++||+||+|.|+.++|..+|++|++ .++|+|.+++.|+.|++++-.+.. +|... .++..+.
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~ 155 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPM 155 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCc
Confidence 74 34578999999999999999999999999999 999999999999999999888742 22211 1111222
Q ss_pred eee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHhcCCCc---chh---
Q 023036 185 CQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNF---KLV--- 257 (288)
Q Consensus 185 ~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--- 257 (288)
|++ +||+.. .|....|...|+ .+....+.+.+.++..++.++++. ..+
T Consensus 156 Cti~~~P~~~----------------~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i 210 (234)
T cd01484 156 CTIASMPRLP----------------EHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGV 210 (234)
T ss_pred cccCCCCCCc----------------hHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 333 344333 333333333433 244677888888988888887543 233
Q ss_pred hh----hhhHHHHHHHhhccccc
Q 023036 258 FV----CIIGCLVIKLQSCCTLL 276 (288)
Q Consensus 258 ~g----~~~~~~~i~~~~~~~~~ 276 (288)
.| .+.++.||.|-.++.|+
T Consensus 211 ~~~iipai~tTnaiia~~~~~e~ 233 (234)
T cd01484 211 AGRIIPAVATTNAVVAGVCALEV 233 (234)
T ss_pred hcCeecchhhHHHHHHHHHHHhh
Confidence 22 27889999988888775
No 21
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.7e-35 Score=270.40 Aligned_cols=240 Identities=20% Similarity=0.302 Sum_probs=180.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|+|||+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++++|+ |++||++++++++++||+++|+++...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999888
Q ss_pred CCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC-eeeecCC-CC---cccee
Q 023036 113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN-HKYSKQK-IE---ETIEC 185 (288)
Q Consensus 113 ~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~-~~~~~~~-~~---~~~~~ 185 (288)
+.+ .+.+++++||+||.|.|+.+.+..+|++|+. +++|||.+++.|+.|++++++|+ +.+.+.. ++ +.+.|
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic 155 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC 155 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence 765 3568999999999999999999999999999 99999999999999999999986 4455422 21 22334
Q ss_pred ee-cCCChhhhhcCCCcCCC-----CC-chhHHHHHHHHHHHHHHhCCCCCC-------C---CcchHHHHHHHHHHHHH
Q 023036 186 QL-RYPSFEEAISVPWRALP-----RK-ASKLYFALRVLEQFEEAEGRSPGE-------I---SIADLPAVLKLKKELCE 248 (288)
Q Consensus 186 ~~-~f~~l~~~~~~~~~~~~-----~~-~~~~~~~~~aL~~f~~~~~~~P~~-------~---~~~d~~~~~~~~~~~~~ 248 (288)
++ ++|+..+ +++.|++.. +. ...+.-+......|+. .+.|.| . +....+.+.+.++..++
T Consensus 156 tI~~~p~~~~-hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~--~~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~ 232 (312)
T cd01489 156 TIRSTPSQPI-HCIVWAKSLFFLFNKVFKDDIERLLSMEELWKT--RKPPVPLSWKELTFDKDDQDALDFVAAAANLRSH 232 (312)
T ss_pred eecCCCCCCE-eehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--CCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHH
Confidence 44 5555433 566676520 00 0001111111112222 223322 1 22235566777777777
Q ss_pred hcCCCc--------------------chhhhhhhHHHHHHHhhcccccchhccccC
Q 023036 249 ANVRNF--------------------KLVFVCIIGCLVIKLQSCCTLLSLFQCRHS 284 (288)
Q Consensus 249 ~~~~~~--------------------~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~ 284 (288)
.++++. .+++.|++..|++|.++++.+ .||++
T Consensus 233 ~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~----~~~~~ 284 (312)
T cd01489 233 VFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKE----QCRTV 284 (312)
T ss_pred HcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHH----HhhhH
Confidence 776443 445888999999999998743 45654
No 22
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=4.1e-36 Score=309.33 Aligned_cols=186 Identities=24% Similarity=0.436 Sum_probs=162.5
Q ss_pred HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEcCCcCCcccccccccCCCCccccC
Q 023036 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (288)
Q Consensus 11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~~~~~di~~~ 85 (288)
.+|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+||||++.+||
T Consensus 399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI--- 475 (1008)
T TIGR01408 399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI--- 475 (1008)
T ss_pred hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---
Confidence 589999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CCcHHHHHHHHHhhhCCCceeeeeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
|++||++++++++++||+++++++...+.. .+++|++++|+||+|.|+.++|..+++.|+. +++|+|.+++.|
T Consensus 476 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~--~~iPli~~gt~G 553 (1008)
T TIGR01408 476 GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLA--FLKPLLESGTLG 553 (1008)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence 999999999999999999999999887743 2367899999999999999999999999999 999999999999
Q ss_pred ceEEEEEEcCCee-eecCCCC----ccceeee-cCCChhhhhcCCCcC
Q 023036 161 SCGEIFVDLQNHK-YSKQKIE----ETIECQL-RYPSFEEAISVPWRA 202 (288)
Q Consensus 161 ~~G~v~~d~~~~~-~~~~~~~----~~~~~~~-~f~~l~~~~~~~~~~ 202 (288)
+.|++++..+..+ ......+ ..+.|++ +||+..+ +++.|++
T Consensus 554 ~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~-h~i~wa~ 600 (1008)
T TIGR01408 554 TKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIE-HTIQWAR 600 (1008)
T ss_pred ceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCch-HHHHHHH
Confidence 9999999988632 3322221 2233454 6666544 5566654
No 23
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=268.78 Aligned_cols=156 Identities=23% Similarity=0.328 Sum_probs=144.8
Q ss_pred Hhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcH
Q 023036 12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI 89 (288)
Q Consensus 12 ~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K 89 (288)
+||+||+++ ||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+ ..|++|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~K 81 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKPK 81 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCccH
Confidence 699999998 89999999999999999999999999999999999999999999999999999999999997 124899
Q ss_pred HHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEE
Q 023036 90 AEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168 (288)
Q Consensus 90 a~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d 168 (288)
|++++++|+++||+++++++..+++. ...++++++|+||+|+|+.+++..+|++|++ .++|+|.+++.|++|++++.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~--~~ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK--YNIPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEEE
Confidence 99999999999999999999877753 3467889999999999999999999999999 99999999999999998765
Q ss_pred cC
Q 023036 169 LQ 170 (288)
Q Consensus 169 ~~ 170 (288)
.+
T Consensus 160 ~P 161 (338)
T PRK12475 160 IP 161 (338)
T ss_pred CC
Confidence 54
No 24
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=2.2e-34 Score=267.26 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=144.7
Q ss_pred Hhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC--
Q 023036 12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK-- 87 (288)
Q Consensus 12 ~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~-- 87 (288)
+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+ |+
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di---g~g~ 79 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV---KNNL 79 (339)
T ss_pred chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh---cCCC
Confidence 699999998 99999999999999999999999999999999999999999999999999999999999998 65
Q ss_pred cHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 88 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
+|+++++++|+++||+++++.+..+++.. ..++++++|+||+|+|+++.+..+|++|++ .++|+|++++.|++|+++
T Consensus 80 ~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~--~~iP~i~~~~~g~~G~~~ 157 (339)
T PRK07688 80 PKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK--YGIPWIYGACVGSYGLSY 157 (339)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeeeeeeeEEE
Confidence 99999999999999999999998877653 367889999999999999999999999999 999999999999999987
Q ss_pred EEcC
Q 023036 167 VDLQ 170 (288)
Q Consensus 167 ~d~~ 170 (288)
+..+
T Consensus 158 ~~~p 161 (339)
T PRK07688 158 TIIP 161 (339)
T ss_pred EECC
Confidence 6543
No 25
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=3.6e-34 Score=256.51 Aligned_cols=151 Identities=22% Similarity=0.337 Sum_probs=138.6
Q ss_pred CCCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcccc
Q 023036 5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY 84 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~ 84 (288)
.||+++.+||+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+++
T Consensus 4 ~~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v-- 81 (268)
T PRK15116 4 VISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV-- 81 (268)
T ss_pred CCCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc--
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 85 ~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
|++|++++++++.++||+++|+.+...+.. ...+++ .+||+||+|.|+...+..++++|++ +++|+|.++..|
T Consensus 82 -G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag 156 (268)
T PRK15116 82 -GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG 156 (268)
T ss_pred -ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc
Confidence 999999999999999999999988766553 234455 4799999999999999999999999 999999775443
No 26
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-34 Score=254.72 Aligned_cols=162 Identities=31% Similarity=0.438 Sum_probs=153.1
Q ss_pred CCCHHHHHhhhhhhhhccH--HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 5 ELTEQETALYDRQIRVWGA--DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl~G~--~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
.+++.+.+||+||+++|+. ++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||.||++++++|+
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 4789999999999999664 45999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++|++++++.++++||.+.++.+...+...+ .++++++|+|++|+|+.+++..+|++|++ .++|++++++.|+
T Consensus 82 ---g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~--~~~pli~~~~~~~ 156 (254)
T COG0476 82 ---GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVK--LGIPLVHGGAIGF 156 (254)
T ss_pred ---CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHH--hCCCeEeeeeccc
Confidence 99999999999999999999999998876544 68899999999999999999999999999 9999999999999
Q ss_pred eEEEEEEcCC
Q 023036 162 CGEIFVDLQN 171 (288)
Q Consensus 162 ~G~v~~d~~~ 171 (288)
.|++++..+.
T Consensus 157 ~g~~~~~~~~ 166 (254)
T COG0476 157 EGQVTVIIPG 166 (254)
T ss_pred eEEEEEEecC
Confidence 9999988875
No 27
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.3e-33 Score=266.20 Aligned_cols=161 Identities=25% Similarity=0.348 Sum_probs=151.0
Q ss_pred CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
.++.++.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++++++|+
T Consensus 107 ~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di 186 (376)
T PRK08762 107 LLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV 186 (376)
T ss_pred CCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC
Confidence 4788899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++|+++++++|+++||.++++.+...+++. ..++++++|+||+|+|+.+.+..+|++|++ +++|||.+++.|+
T Consensus 187 ---G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~g~ 261 (376)
T PRK08762 187 ---GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK--LGKPLVYGAVFRF 261 (376)
T ss_pred ---CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence 9999999999999999999999988777643 356789999999999999999999999999 9999999999999
Q ss_pred eEEEEEEcC
Q 023036 162 CGEIFVDLQ 170 (288)
Q Consensus 162 ~G~v~~d~~ 170 (288)
.|++.+..+
T Consensus 262 ~g~v~~~~p 270 (376)
T PRK08762 262 EGQVSVFDA 270 (376)
T ss_pred EEEEEEEeC
Confidence 999885443
No 28
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=100.00 E-value=3.2e-34 Score=250.00 Aligned_cols=124 Identities=30% Similarity=0.483 Sum_probs=114.0
Q ss_pred CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (288)
Q Consensus 6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~ 85 (288)
++++|.+||||||++||.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ ++
T Consensus 1 ms~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv--- 76 (287)
T PTZ00245 1 MRDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA--- 76 (287)
T ss_pred CCHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999997 57
Q ss_pred CCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHH
Q 023036 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKK 138 (288)
Q Consensus 86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~ 138 (288)
|++|+++++++|+++||+|+|+.+...++. -++|++||.+..+.+...
T Consensus 77 Gk~KAeaAa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~av 124 (287)
T PTZ00245 77 GGTRGARALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEEDAV 124 (287)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHHHH
Confidence 999999999999999999999998876644 348999999987766533
No 29
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-33 Score=276.42 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=149.7
Q ss_pred CHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCC
Q 023036 7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG 86 (288)
Q Consensus 7 ~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G 86 (288)
.+.+.++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+ |
T Consensus 19 ~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G 95 (679)
T PRK14851 19 AEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---G 95 (679)
T ss_pred HHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---C
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036 87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (288)
Q Consensus 87 ~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G 163 (288)
++|+++++++|+++||.++|+++...+++.+ .++++++|+||+|.|+ .+.+..+++.|++ ++||+|.+++.|+.|
T Consensus 96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~G~~g 173 (679)
T PRK14851 96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPLGYSS 173 (679)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecccccc
Confidence 9999999999999999999999999887644 7889999999999996 4678899999999 999999999999999
Q ss_pred EEEEEcC
Q 023036 164 EIFVDLQ 170 (288)
Q Consensus 164 ~v~~d~~ 170 (288)
++++..+
T Consensus 174 ~~~~~~p 180 (679)
T PRK14851 174 AMLVFTP 180 (679)
T ss_pred eEEEEcC
Confidence 9888765
No 30
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-32 Score=243.30 Aligned_cols=243 Identities=18% Similarity=0.214 Sum_probs=194.8
Q ss_pred cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036 22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (288)
Q Consensus 22 G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN 101 (288)
+.|..+-+.+.+|||||+||+|||++|||+++|++.++++|.|+++.+||+|||+|++.|+ |++||+++++.+++..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rv 107 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRV 107 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhC
Confidence 6788899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC--------ceEEEEeeecceEEEEEEcCCe-
Q 023036 102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--------VAFYTVDCRDSCGEIFVDLQNH- 172 (288)
Q Consensus 102 p~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~--------ip~i~~~~~G~~G~v~~d~~~~- 172 (288)
|...|..+..++++...+|+++|++||+..|+.+.|++||....++... ||+|++++.|+.|.+++-.+++
T Consensus 108 p~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~T 187 (422)
T KOG2015|consen 108 PGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGIT 187 (422)
T ss_pred CCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCcc
Confidence 9999999999999999999999999999999999999999976543322 7999999999999999999986
Q ss_pred eeecCCCCccceeee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHhC-CCC-CCCCcchHHHHHHHHHHHHHh
Q 023036 173 KYSKQKIEETIECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEG-RSP-GEISIADLPAVLKLKKELCEA 249 (288)
Q Consensus 173 ~~~~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~~-~~P-~~~~~~d~~~~~~~~~~~~~~ 249 (288)
.+.+ |++ .||+-..+=-+..+++ .|.|.-.+-+..+.+|.+.+- ..| ...+.++.+++.+-+.+.+.+
T Consensus 188 aCie--------Ctldlyppqvs~P~CTiAnt-PRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~e 258 (422)
T KOG2015|consen 188 ACIE--------CTLDLYPPQVSYPMCTIANT-PRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANE 258 (422)
T ss_pred HHHH--------hHHhhcCcccCcccceecCC-CCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 3333 111 3433222111123333 234444444555667776652 233 344567788888888888777
Q ss_pred c---CCCcchhhhh-------hhHHHHHHHhhccccc
Q 023036 250 N---VRNFKLVFVC-------IIGCLVIKLQSCCTLL 276 (288)
Q Consensus 250 ~---~~~~~~~~g~-------~~~~~~i~~~~~~~~~ 276 (288)
+ |++..++.|. ..+++|+.|.+|++|+
T Consensus 259 f~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea 295 (422)
T KOG2015|consen 259 FNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEA 295 (422)
T ss_pred cccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHH
Confidence 5 4566777776 5789999999999886
No 31
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2e-32 Score=276.99 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=145.5
Q ss_pred HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (288)
Q Consensus 11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka 90 (288)
..+|+||+++||.++|+||++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++.+|+ |++|+
T Consensus 312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI---G~~Ka 388 (989)
T PRK14852 312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF---GRGKL 388 (989)
T ss_pred HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC---CChHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCCh--hhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036 91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 91 ~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~--~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~ 167 (288)
++++++|+++||+++|+++...+++ +.++|++++|+||+|.|+. +.+..+++.|++ ++||+|.+++.|+.|++++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~~G~~g~v~v 466 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGPLGYSCALLV 466 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeeccccCeeEEE
Confidence 9999999999999999999888754 4578999999999999974 567788999999 9999999999999999987
Q ss_pred EcC
Q 023036 168 DLQ 170 (288)
Q Consensus 168 d~~ 170 (288)
..+
T Consensus 467 ~~p 469 (989)
T PRK14852 467 FMP 469 (989)
T ss_pred EcC
Confidence 764
No 32
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.98 E-value=2.4e-31 Score=251.75 Aligned_cols=164 Identities=23% Similarity=0.434 Sum_probs=140.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-----CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
+|+|||+||+|||++|||+++|| |+|+|+|+|.|+.+||+|||+++++|| |++||+++++.++++||+++|+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred eeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCCe--eeecC--C
Q 023036 108 VEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH--KYSKQ--K 178 (288)
Q Consensus 108 ~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~~--~~~~~--~ 178 (288)
++...+.+ .+++|++++|+||.|.|+.++|..+++.|+. .++|+|.+++.|+.|++.+-.+.. +|... .
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~--~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p 155 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVY--YRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDP 155 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEecccceeEEEEEeCCCCCCccCCCCC
Confidence 99887753 2468899999999999999999999999999 999999999999999999998742 23221 1
Q ss_pred -CCccceeee-cCCChhhhhcCCCcC
Q 023036 179 -IEETIECQL-RYPSFEEAISVPWRA 202 (288)
Q Consensus 179 -~~~~~~~~~-~f~~l~~~~~~~~~~ 202 (288)
.+..+.|++ +||+..+ +++.|++
T Consensus 156 ~~~~~P~Ctl~~~P~~~e-HcI~wA~ 180 (435)
T cd01490 156 PEKSIPLCTLKNFPNAIE-HTIQWAR 180 (435)
T ss_pred CCCCCCCccccCCCCCch-HHHHHHH
Confidence 122334555 6666655 4555543
No 33
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.98 E-value=8.1e-32 Score=219.05 Aligned_cols=133 Identities=27% Similarity=0.484 Sum_probs=122.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
|++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+ |++|+++++++|+++||+++++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036 110 KGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 110 ~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~ 167 (288)
+..+++ ...++++++|+||+|.++.+.+..++++|++ +++|||.+++.|+.|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICRE--YGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHH--TT-EEEEEEEETTEEEEEE
T ss_pred ecccccccccccccCCCEEEEecCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence 998853 4577889999999999999999999999999 9999999999999999864
No 34
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=3.4e-32 Score=244.28 Aligned_cols=207 Identities=23% Similarity=0.256 Sum_probs=175.3
Q ss_pred CCCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc
Q 023036 4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE 81 (288)
Q Consensus 4 ~~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d 81 (288)
..|+.+|..||+||+.+ +|..||.+|++++|||||+||+||..+..|+.+|||+|-|+|.|.|+.+|+.||.+.+++.
T Consensus 37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~ 116 (427)
T KOG2017|consen 37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR 116 (427)
T ss_pred cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence 35999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 82 i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
+ |+.||++++..++++||.++|+.+.+.+.. +..+.+++||+|++|+||..+|+.|++.|.. .++|++.+.+.+
T Consensus 117 v---g~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVl--LgkpLVSgSaLr 191 (427)
T KOG2017|consen 117 V---GMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVL--LGKPLVSGSALR 191 (427)
T ss_pred h---hhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHH--cCCccccccccc
Confidence 9 999999999999999999999999998875 4578899999999999999999999999988 999999999999
Q ss_pred ceEEEEEEcCCeeeecCCCCccceeeecCCChhh--hh-cCCCcCCCCCchhHHHHHHHHHHHHHHh
Q 023036 161 SCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEE--AI-SVPWRALPRKASKLYFALRVLEQFEEAE 224 (288)
Q Consensus 161 ~~G~v~~d~~~~~~~~~~~~~~~~~~~~f~~l~~--~~-~~~~~~~~~~~~~~~~~~~aL~~f~~~~ 224 (288)
+-|+.-+ |.|- . -+..++-||.... .. ++.-..+-.-+..++-+++||+.-+-.-
T Consensus 192 ~EGQLtv----Yny~--~---GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~ 249 (427)
T KOG2017|consen 192 WEGQLTV----YNYN--N---GPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIA 249 (427)
T ss_pred ccceeEE----eecC--C---CceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHH
Confidence 9998632 2221 1 1233565555443 22 3333333344566778888887766543
No 35
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.97 E-value=7e-31 Score=229.07 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=135.0
Q ss_pred HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036 11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90 (288)
Q Consensus 11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka 90 (288)
.+.|.++.+.||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+|++||+++ ++|+ |++|+
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka 83 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKV 83 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHH
Confidence 4677778888999999999999999999999999999999999999999999999999999999876 6788 99999
Q ss_pred HHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCC-CceEEEEeeecceEE
Q 023036 91 EVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGE 164 (288)
Q Consensus 91 ~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~-~ip~i~~~~~G~~G~ 164 (288)
++++++|+++||+++++.+...+++.+ .++++++|+||.|.|+.+.+..+++.|++ + ++|+|.+...|.+|+
T Consensus 84 ~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~--~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 84 EALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE--HPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH--hCCCCEEEeehhhccCC
Confidence 999999999999999999988876543 47889999999999999999999999998 8 999999866555554
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=1.9e-30 Score=212.85 Aligned_cols=132 Identities=26% Similarity=0.391 Sum_probs=125.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||||++.+|+ |++|+++++++++++||+++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999887
Q ss_pred CCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036 113 LSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169 (288)
Q Consensus 113 ~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~ 169 (288)
+.+. ..++++++|+||+|.++.+.+..++++|++ +++|||.+++.|+.|+++++.
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~--~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCCcEEEEEEEE
Confidence 7643 367889999999999999999999999999 999999999999999999775
No 37
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=2.4e-30 Score=227.99 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=125.9
Q ss_pred ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (288)
Q Consensus 21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l 100 (288)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++..+|+ |++|+++++++|+++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~i 77 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDI 77 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCceeeeeecCCCC-cchhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 101 NPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 101 Np~v~v~~~~~~~~~-~~~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
||+++++.+...+.+ ...+++ ++||+||+|.|+.+.+..++++|++ +++|+|.+...|.
T Consensus 78 nP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~ 138 (231)
T cd00755 78 NPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGG 138 (231)
T ss_pred CCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcC
Confidence 999999999887764 334454 4799999999999999999999999 9999998866664
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=253.39 Aligned_cols=151 Identities=25% Similarity=0.319 Sum_probs=140.3
Q ss_pred CCHHHH--HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCcc
Q 023036 6 LTEQET--ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 6 l~~~e~--~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
+++.+. +||+||+.+||.++|++|++++|+|+|+| +|+.++.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+
T Consensus 80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di 157 (722)
T PRK07877 80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL 157 (722)
T ss_pred CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence 567776 89999999999999999999999999996 99999999999996 9999999999999999998 5788999
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|++|+++++++|+++||+++|+++...++.. .+++++++|+||+|+|+++++..+|+.|++ ++||+|.+...+
T Consensus 158 ---G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~~~- 231 (722)
T PRK07877 158 ---GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARA--RRIPVLMATSDR- 231 (722)
T ss_pred ---ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCC-
Confidence 9999999999999999999999999998753 477899999999999999999999999999 999999888554
Q ss_pred eEEE
Q 023036 162 CGEI 165 (288)
Q Consensus 162 ~G~v 165 (288)
|.+
T Consensus 232 -g~~ 234 (722)
T PRK07877 232 -GLL 234 (722)
T ss_pred -CCc
Confidence 655
No 39
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-30 Score=240.66 Aligned_cols=174 Identities=20% Similarity=0.387 Sum_probs=148.5
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM 103 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~ 103 (288)
+-++++.++|||||||||+|||++|||++.|+++|+|+|-|+|+.+||+|||||+.++| |++||.++++..++.||+
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn 81 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPN 81 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCC
Confidence 45778899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ceeeeeecCCCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC----eeeecC
Q 023036 104 VRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN----HKYSKQ 177 (288)
Q Consensus 104 v~v~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~----~~~~~~ 177 (288)
+++.++..++.+ .+.+|+++||+|..|.|+.++|..+|+.|.- ..+|+|..|+.|+.|+|.+-..+ |++..+
T Consensus 82 ~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~--a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK 159 (603)
T KOG2013|consen 82 IKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLA--ASVPLIESGTGGFLGQVQVIIKGKTECYECIPK 159 (603)
T ss_pred CceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHh--hcCCceecCcccccceEEEEecCCcceecccCC
Confidence 999999888765 4688999999999999999999999999988 99999999999999999987663 333332
Q ss_pred C-CCccceeeecCCChhhhhcCCCcC
Q 023036 178 K-IEETIECQLRYPSFEEAISVPWRA 202 (288)
Q Consensus 178 ~-~~~~~~~~~~f~~l~~~~~~~~~~ 202 (288)
. +.+.+.|++.-.+-+-.+++-|++
T Consensus 160 ~~~kTypvCTIRstPS~~iHCIVWAK 185 (603)
T KOG2013|consen 160 PVPKTYPVCTIRSTPSEPIHCIVWAK 185 (603)
T ss_pred CCCCcCCceEeecCCCCceeeeeehH
Confidence 2 233344555433334444555544
No 40
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-29 Score=246.84 Aligned_cols=192 Identities=23% Similarity=0.434 Sum_probs=167.4
Q ss_pred CCCHHH----HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-----eEEEEcCCcCCcccccccc
Q 023036 5 ELTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDRVVTEEAWSANF 75 (288)
Q Consensus 5 ~l~~~e----~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg-----~i~lvD~d~v~~~nl~r~f 75 (288)
.+++++ -.|||-||+++|..-|+||.+.++++||+|++|||.+||++++|+| .|++.|.|.++.+||+|||
T Consensus 400 ~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQF 479 (1013)
T KOG2012|consen 400 PPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQF 479 (1013)
T ss_pred CCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhcccccee
Confidence 355555 3599999999999999999999999999999999999999999994 7999999999999999999
Q ss_pred cCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC
Q 023036 76 LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR 150 (288)
Q Consensus 76 ~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ 150 (288)
+|++.|| |++|+++++.....+||+++|+++...+.. ++++||.+.|+|..+.||.++|+.++..|.- +.
T Consensus 480 LFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~--~~ 554 (1013)
T KOG2012|consen 480 LFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVY--YR 554 (1013)
T ss_pred ecccccc---CchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhh--hc
Confidence 9999999 999999999999999999999998877632 4799999999999999999999999999988 99
Q ss_pred ceEEEEeeecceEEEEEEcCC--eeee---cCCCCccceeee-cCCChhhhhcCCCcC
Q 023036 151 VAFYTVDCRDSCGEIFVDLQN--HKYS---KQKIEETIECQL-RYPSFEEAISVPWRA 202 (288)
Q Consensus 151 ip~i~~~~~G~~G~v~~d~~~--~~~~---~~~~~~~~~~~~-~f~~l~~~~~~~~~~ 202 (288)
+|++.+++.|..|.+.+..+- -.|. |+..++.+-|++ +||.-.+ +.+.|++
T Consensus 555 kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~Ie-HTiqWAR 611 (1013)
T KOG2012|consen 555 KPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIE-HTIQWAR 611 (1013)
T ss_pred cchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHH-HHHHHHH
Confidence 999999999999988888773 2332 222334556777 8887776 6666753
No 41
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.95 E-value=1.6e-27 Score=219.34 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=136.5
Q ss_pred CCCCHHHHHhhhhhhhh---cc-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCC
Q 023036 4 EELTEQETALYDRQIRV---WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP 79 (288)
Q Consensus 4 ~~l~~~e~~rYdRqirl---~G-~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~ 79 (288)
++|++.+.+||.||+.+ || .++|++|++++|+ +||+|+.++.+|+. |||+|+|+|+|.|+.+||+ +++++
T Consensus 45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~ 118 (318)
T TIGR03603 45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK 118 (318)
T ss_pred hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence 45888999999999999 56 5589999999999 99999999999999 9999999999999999999 89999
Q ss_pred CccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHH--HHHHHHhcCCCceEEEEe
Q 023036 80 DENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKL--INEKCRKLSKRVAFYTVD 157 (288)
Q Consensus 80 ~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~--i~~~~~~~~~~ip~i~~~ 157 (288)
+|+ |++|+++++++|.++||.++++.. .++++++|+||+|+|++.++.. +|++|.+ .++|||.+.
T Consensus 119 ~di---G~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~--~~~PlV~ga 185 (318)
T TIGR03603 119 EFI---LKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKE--TKKPNTIAF 185 (318)
T ss_pred hhc---CcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHH--HCCCEEEEE
Confidence 999 999999999999999999988753 4678999999999999999865 9999999 999999999
Q ss_pred eecceEEEEEEcC
Q 023036 158 CRDSCGEIFVDLQ 170 (288)
Q Consensus 158 ~~G~~G~v~~d~~ 170 (288)
..|+.|++..-++
T Consensus 186 v~g~~Gqv~~~~P 198 (318)
T TIGR03603 186 IDGPFVFITCTLP 198 (318)
T ss_pred EccCEEEEEEEeC
Confidence 9999999875543
No 42
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=1.3e-27 Score=206.67 Aligned_cols=150 Identities=20% Similarity=0.321 Sum_probs=137.4
Q ss_pred CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG 85 (288)
Q Consensus 6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~ 85 (288)
.++.-.+||.|.-+|+|.++.+||++++|+|+|+||+||-++..|+++|||+|+|+|.|.|+.+|+|||.-....++
T Consensus 5 ~~~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i--- 81 (263)
T COG1179 5 ISDAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI--- 81 (263)
T ss_pred hHHHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---
Confidence 34556799999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred CCcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
|++|+++++++++++||+++|......+++.+ ++++ .+||+||+|.|+......+-.+|++ +++|+|.++..|
T Consensus 82 Gk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~--~ki~vIss~Gag 156 (263)
T COG1179 82 GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR--NKIPVISSMGAG 156 (263)
T ss_pred ccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH--cCCCEEeecccc
Confidence 99999999999999999999999998887643 4444 6799999999999999999999999 999999765544
No 43
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.95 E-value=3.2e-27 Score=212.88 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=121.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc--cccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE--NVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d--i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++.+| + |++||++++++|+++||+++++.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence 6999999999999999999999999999999999999999999999999 8 9999999999999999999999886
Q ss_pred cCC---------C-------C--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC
Q 023036 111 GDL---------S-------S--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN 171 (288)
Q Consensus 111 ~~~---------~-------~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~ 171 (288)
..+ . + ...++++++|+|++++|+.+.|..++.+|.. +++|+|. ...|+.||+..-.|-
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~-aalGfdg~lvmrhg~ 153 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVIN-AALGFDSYLVMRHGA 153 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEE-EEeccceEEEEEeCC
Confidence 543 0 1 1357889999999999999999999999999 9999998 578999999988763
No 44
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=7.9e-27 Score=227.49 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=132.1
Q ss_pred cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036 22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (288)
Q Consensus 22 G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN 101 (288)
..-+.++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+...|++||++++++|+++|
T Consensus 329 P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~In 408 (664)
T TIGR01381 329 PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIF 408 (664)
T ss_pred ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHC
Confidence 33455899999999999999999999999999999999999999999999999999998874458999999999999999
Q ss_pred CCceeeeeecCC-------CC-----------cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036 102 PMVRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (288)
Q Consensus 102 p~v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G 163 (288)
|.|+++.+...+ ++ ...++++++|+|++|+|+.++|..++.+|.. +++|+|.+ +.|+.|
T Consensus 409 P~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~a-AlGfdg 485 (664)
T TIGR01381 409 PSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISA-ALGFDS 485 (664)
T ss_pred CCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEE-Eeccce
Confidence 999999887653 22 2356889999999999999999999999999 99999998 589999
Q ss_pred EEEEEcCC
Q 023036 164 EIFVDLQN 171 (288)
Q Consensus 164 ~v~~d~~~ 171 (288)
++.+-.|-
T Consensus 486 ~lvmrhG~ 493 (664)
T TIGR01381 486 YVVMRHGI 493 (664)
T ss_pred EEEEEecc
Confidence 99988763
No 45
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=8.3e-27 Score=197.56 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=116.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|+|+|+||+|++++++|+++|+++++|+|+|.|+.+|++||++. .+|+ |++|+++++++|+++||+++++++...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 699999999999999999999999999999999999999999965 6788 999999999999999999999999888
Q ss_pred CCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCC-CceEEEEeeecceEEEEE
Q 023036 113 LSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 113 ~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~-~ip~i~~~~~G~~G~v~~ 167 (288)
++.. ..++++++|+||.|.|+.+.+..+++.|.+ + ++|||.+...|++|++..
T Consensus 77 ~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~--~~~ip~i~~~~~~~~~~~~~ 131 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLG--NKNKPVVCASGMAGFGDSNN 131 (174)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--HCCCCEEEEehhhccCCeEE
Confidence 7653 367899999999999999999988887766 5 999999988888887653
No 46
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.94 E-value=2.2e-26 Score=199.03 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=120.9
Q ss_pred hhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHh
Q 023036 19 RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK 98 (288)
Q Consensus 19 rl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~ 98 (288)
+-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++|++||++ ..+++ |++|+++++++|+
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~i---G~~Ka~~~~~~l~ 84 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQV---GEPKTEALKENIS 84 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhC---CCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999975 56788 9999999999999
Q ss_pred hhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHH-HHhcCCCceEEEEeeecceEEEE
Q 023036 99 DFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEK-CRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 99 ~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~-~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
++||+++++.+...+++. ..++++++|+||.|.|+.+.+..+++. ++. .+.+++.+ +.|+.|+.+
T Consensus 85 ~inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~--~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 85 EINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEK--YKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred HHCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHH--cCCCcEEE-EeccccCCC
Confidence 999999999988887653 366789999999999999998876554 444 44444433 367777664
No 47
>PRK06153 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=201.34 Aligned_cols=130 Identities=14% Similarity=0.118 Sum_probs=117.8
Q ss_pred HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccc-cCCCCccccCCC--cHHHHHHHHHhh
Q 023036 23 ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANF-LIPPDENVYGGK--TIAEVCCDSLKD 99 (288)
Q Consensus 23 ~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f-~~~~~di~~~G~--~Ka~~~~~~l~~ 99 (288)
...|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+.+|++||+ +++.+|+ |+ +|++++++++.+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~ 244 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSN 244 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999998 5688999 99 999999999999
Q ss_pred hCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036 100 FNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR 159 (288)
Q Consensus 100 lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~ 159 (288)
+||. +.++...+++.+.+.++++|+||+|.|+.+.+..|+++|.+ +++|||.++..
T Consensus 245 in~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~ 300 (393)
T PRK06153 245 MRRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMG 300 (393)
T ss_pred hCCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeec
Confidence 9984 56666666554555789999999999999999999999999 99999987653
No 48
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.90 E-value=3.2e-23 Score=183.41 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=116.0
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC-----C-----eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV-----G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD 99 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv-----g-----~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~ 99 (288)
+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|+++|++||+ |.++|+ |++||++++++++.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dV---G~~Ka~v~~~ri~~ 85 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADV---GQNKAIVLVNRLNQ 85 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHC---CcHHHHHHHHHHHh
Confidence 68899999999999999999999973 4 8999999999999999995 567889 99999999999999
Q ss_pred hCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcC-CCceEEEEeeecceEEEEEE
Q 023036 100 FNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS-KRVAFYTVDCRDSCGEIFVD 168 (288)
Q Consensus 100 lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~-~~ip~i~~~~~G~~G~v~~d 168 (288)
.| .++++++...+.. .+++.++|+||+|.|+.++|..|++.|++.+ .++||+.+++.+..|+|.+-
T Consensus 86 ~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g 152 (244)
T TIGR03736 86 AM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILG 152 (244)
T ss_pred cc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEE
Confidence 88 7889998877765 3456789999999999999999999997622 24899999999999987744
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.9e-20 Score=164.89 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=129.6
Q ss_pred HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036 12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE 91 (288)
Q Consensus 12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~ 91 (288)
+...|.+.++|.++|+|++++-|+|||+||+||-++-.|+++|+++|.|+|.|.|+.+.|+||....-.|+ |.+|+.
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~ 131 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVM 131 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHH
Confidence 33457788899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhhhCCCceeeeeecCCCCcc-hh-hhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 92 VCCDSLKDFNPMVRVSVEKGDLSSLD-GE-FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 92 ~~~~~l~~lNp~v~v~~~~~~~~~~~-~~-~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
++++.++++.|.+.|++...-++..+ ++ .+.+-|+||+|.||.++..-+-++|.+ +++++|.+...+
T Consensus 132 clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~--~~l~Viss~Gaa 200 (430)
T KOG2018|consen 132 CLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYN--HGLKVISSTGAA 200 (430)
T ss_pred HHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHH--cCCceEeccCcc
Confidence 99999999999999999887776433 33 346789999999999999999999988 999999654444
No 50
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.74 E-value=9.7e-18 Score=147.66 Aligned_cols=156 Identities=19% Similarity=0.354 Sum_probs=130.3
Q ss_pred HHHhhhhhhhh--cc-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCC
Q 023036 10 ETALYDRQIRV--WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG 86 (288)
Q Consensus 10 e~~rYdRqirl--~G-~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G 86 (288)
+...|+|-+.| .| ....+|++...|.|+|.||+||-+|..|.+.|||++.|+|.|+|+..|++|-|| +++.. |
T Consensus 58 DSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf-~P~Qa---G 133 (422)
T KOG2336|consen 58 DSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFF-QPDQA---G 133 (422)
T ss_pred cCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccccc-Ccccc---c
Confidence 34679998877 55 577889999999999999999999999999999999999999999999999754 67777 9
Q ss_pred CcHHHHHHHHHhhhCCCceeeeeecCCCCc--chhhh-----------ccCcEEEEecCChhhHHHHHHHHHhcCCCceE
Q 023036 87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSL--DGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF 153 (288)
Q Consensus 87 ~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~--~~~~~-----------~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~ 153 (288)
.+|++++.+.|.++||+|.++++...++.. -+.|. +..|+|+.|.|++++|..+|..|-+ .+--|
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE--~~q~W 211 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNE--LNQTW 211 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHH--hhhHH
Confidence 999999999999999999999998876531 11121 4489999999999999999999988 66667
Q ss_pred EEEeee--cceEEEEEEcCC
Q 023036 154 YTVDCR--DSCGEIFVDLQN 171 (288)
Q Consensus 154 i~~~~~--G~~G~v~~d~~~ 171 (288)
+..+.. ...|.+..-.++
T Consensus 212 mESGVSEnAVSGHIQ~i~PG 231 (422)
T KOG2336|consen 212 MESGVSENAVSGHIQLIVPG 231 (422)
T ss_pred HHccCccccccceeEEecCC
Confidence 755554 456777666553
No 51
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.59 E-value=1.3e-14 Score=141.06 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=121.9
Q ss_pred CCCCHHHHHhhhhhhhhc------cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccC
Q 023036 4 EELTEQETALYDRQIRVW------GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI 77 (288)
Q Consensus 4 ~~l~~~e~~rYdRqirl~------G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~ 77 (288)
++|++...+||..||..+ |....++.++++|+|+|+|++|+.++.+|+.+|+++|..+|.|.+ .+|++|
T Consensus 96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---- 170 (637)
T TIGR03693 96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---- 170 (637)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence 458999999999999985 556677789999999999999999999999999999999999999 999998
Q ss_pred CCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC---ce
Q 023036 78 PPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR---VA 152 (288)
Q Consensus 78 ~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~---ip 152 (288)
| |+. ++.+++ .||++.++..+....+...+.++++|+||...|+ .....++|+.|.+ .+ +|
T Consensus 171 ----I---gEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IP 236 (637)
T TIGR03693 171 ----I---HEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKE--EGKGFIP 236 (637)
T ss_pred ----H---HHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHH--cCCCeEE
Confidence 6 776 554444 9999999988764333346788999999999984 4567899999999 88 67
Q ss_pred EEEEeeecceEEEEE
Q 023036 153 FYTVDCRDSCGEIFV 167 (288)
Q Consensus 153 ~i~~~~~G~~G~v~~ 167 (288)
++.++..++.|-+|-
T Consensus 237 ai~~G~~~liGPlft 251 (637)
T TIGR03693 237 AICLKQVGLAGPVFQ 251 (637)
T ss_pred EEEcccceeecceEC
Confidence 777777778887774
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.57 E-value=7.6e-15 Score=138.50 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=121.7
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM 103 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~ 103 (288)
-...++.+.++|+.|+|.+||.||+||+..||++||++|..+|+.+|-.||.+++-+|-...|++||++++++|++++|.
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~ 412 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS 412 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence 34578999999999999999999999999999999999999999999999999998887335799999999999999999
Q ss_pred ceeeeeecCC-------CC-----------cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036 104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (288)
Q Consensus 104 v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v 165 (288)
++-+.+...+ .+ ..+.++++.|+|+..+|+.+.|..=.-+|.. +++-.|. .+.|+-.|+
T Consensus 413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~--~~KivIN-aALGFDsyl 489 (669)
T KOG2337|consen 413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAA--KNKIVIN-AALGFDSYL 489 (669)
T ss_pred ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhh--hcceEee-eecccceeE
Confidence 9766554432 11 1245689999999999999998776666655 6665555 568999999
Q ss_pred EEEcCC
Q 023036 166 FVDLQN 171 (288)
Q Consensus 166 ~~d~~~ 171 (288)
..-.|.
T Consensus 490 VMRHG~ 495 (669)
T KOG2337|consen 490 VMRHGT 495 (669)
T ss_pred EEecCC
Confidence 998885
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.85 E-value=2.6e-08 Score=81.83 Aligned_cols=124 Identities=12% Similarity=0.121 Sum_probs=99.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHH---HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~---l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v 106 (288)
-...|.++|||-+|--++-+|. +.|..+|.++|.+.|++.|+-- ..-...+ |.+|++.++ +|..-.+.-.|
T Consensus 17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~---GEyKv~Fi~-rl~~~~f~r~V 90 (217)
T COG4015 17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKV---GEYKVDFIK-RLGRVHFGRRV 90 (217)
T ss_pred CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCc---chhHHHHHH-HhCcCCCCcee
Confidence 3557999999999999999998 6789999999999999999742 1223456 999999875 55666777789
Q ss_pred eeeecCCCCcchhhhccCcEEEEec---CChhhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSC---CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~---~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~ 164 (288)
++.++.++..+...+.+ |+|++|. ++.+....|.++|++ .++.-| ++.|.||+
T Consensus 91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~--rG~~Ti--sT~GVFGi 146 (217)
T COG4015 91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKE--RGIKTI--STNGVFGI 146 (217)
T ss_pred ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHH--cCceEe--ecCceeec
Confidence 99988887766677776 8888875 567788899999999 877655 67788885
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.06 E-value=1.6e-05 Score=64.36 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=58.5
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.+++++|+|+|+||.|..+++.|...|+++|+|+.. -..|++.+++.+ +...+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~~ 62 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNIE 62 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Cccccc
Confidence 689999999999999999999999999999999864 234777777776 333444
Q ss_pred eeecCCCCcchhhhccCcEEEEecCCh
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
...-. + ..+.+.++|+||.|+...
T Consensus 63 ~~~~~--~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 63 AIPLE--D-LEEALQEADIVINATPSG 86 (135)
T ss_dssp EEEGG--G-HCHHHHTESEEEE-SSTT
T ss_pred eeeHH--H-HHHHHhhCCeEEEecCCC
Confidence 43321 1 235678999999998654
No 55
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.98 E-value=6.8e-05 Score=65.04 Aligned_cols=95 Identities=7% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|++.+|+|||.|.+|...++.|...| .++++++++.- ..+ .+...+ -.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------~~l-----------~~l~~~----~~i~ 57 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------ENL-----------VKLVEE----GKIR 57 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------HHH-----------HHHHhC----CCEE
Confidence 378899999999999999999999999 67999975210 001 111111 1233
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~ 157 (288)
..... .....+.++|+||.++++.+....|.+.|+ .++++-.++
T Consensus 58 ~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~---~~~lvn~~d 101 (202)
T PRK06718 58 WKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLP---ENALFNVIT 101 (202)
T ss_pred EEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHH---hCCcEEECC
Confidence 33322 234567889999999999999999999994 456554444
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.94 E-value=3.9e-05 Score=69.98 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=59.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
++.++|+|+|+||.|..++..|+..|+++|+|+|. ...|++.+++.+.+.+|.+.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR----------------------~~~ka~~la~~l~~~~~~~~~~~ 182 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV----------------------DPARAAALADELNARFPAARATA 182 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHHHhhCCCeEEEe
Confidence 56679999999999999999999999999999986 23488889998888777644432
Q ss_pred eecCCCCcchhhhccCcEEEEec
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSC 131 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~ 131 (288)
.. + ..+.+.++|+||.|+
T Consensus 183 ~~----~-~~~~~~~aDiVInaT 200 (284)
T PRK12549 183 GS----D-LAAALAAADGLVHAT 200 (284)
T ss_pred cc----c-hHhhhCCCCEEEECC
Confidence 21 1 133457899999986
No 57
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.87 E-value=0.00015 Score=63.00 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=74.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
|++.+|+|||.|.+|..-++.|...|. .+++++++.- +.+ +.+.+.. +++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------~~l------------~~l~~~~---~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------SEL------------TLLAEQG---GITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HHH------------HHHHHcC---CEEE
Confidence 678999999999999999999999995 6999987321 111 1122211 3555
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v 165 (288)
....+. .+.+.++++||.++++.+....+...|++ .++++-.++.-....++
T Consensus 58 ~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~--~~ilvn~~d~~e~~~f~ 109 (205)
T TIGR01470 58 LARCFD---ADILEGAFLVIAATDDEELNRRVAHAARA--RGVPVNVVDDPELCSFI 109 (205)
T ss_pred EeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHH--cCCEEEECCCcccCeEE
Confidence 554433 45678999999999998888899999999 89988666554444333
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00012 Score=69.31 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=64.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+|+|+|+|++|+-+|.+|+..|.+.|++.|... .| +.++.+.... ++++..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~----------------------~~----~~~i~~~~~~-~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK----------------------EK----CARIAELIGG-KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH----------------------HH----HHHHHhhccc-cceeEEe
Confidence 5799999999999999999999999999998621 11 1222222111 4444444
Q ss_pred CCCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 112 DLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 112 ~~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
+..+ ...+.++++|+||.+....-.. .+-+.|-+ .++++++.....
T Consensus 55 D~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~--~gv~yvDts~~~ 102 (389)
T COG1748 55 DAADVDALVALIKDFDLVINAAPPFVDL-TILKACIK--TGVDYVDTSYYE 102 (389)
T ss_pred cccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHH--hCCCEEEcccCC
Confidence 4433 2356788888888876543333 66677766 777777665544
No 59
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.59 E-value=0.00013 Score=56.36 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=64.1
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|++.+|+|||.|.+|..-++.|..+| .+++++.++. + .. . . .++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~-------------~~-----------~-------~--~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E-------------FS-----------E-------G--LIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H-------------HH-----------H-------T--SCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h-------------hh-----------h-------h--HHH
Confidence 478999999999999999999999999 6799998754 0 00 0 1 112
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~ 157 (288)
.....+ .+.++++++|+.++++......|.+.|++ .++|+-.+.
T Consensus 49 ~~~~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~--~~i~vn~~D 92 (103)
T PF13241_consen 49 LIRREF----EEDLDGADLVFAATDDPELNEAIYADARA--RGILVNVVD 92 (103)
T ss_dssp EEESS-----GGGCTTESEEEE-SS-HHHHHHHHHHHHH--TTSEEEETT
T ss_pred HHhhhH----HHHHhhheEEEecCCCHHHHHHHHHHHhh--CCEEEEECC
Confidence 223222 24577899999999999999999999999 889876544
No 60
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.57 E-value=0.00081 Score=55.96 Aligned_cols=84 Identities=6% Similarity=0.163 Sum_probs=61.8
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|++.+|+|||.|.+|...++.|...|. .+++++++..+ .+.++. .+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~----------------------------~l~~l~---~i~ 57 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK----------------------------EMKELP---YIT 57 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH----------------------------HHHhcc---CcE
Confidence 4789999999999999999999999996 59999753211 111111 122
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
..... +.++.+.++|+||.++++.+....+...|++
T Consensus 58 ~~~~~---~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~ 93 (157)
T PRK06719 58 WKQKT---FSNDDIKDAHLIYAATNQHAVNMMVKQAAHD 93 (157)
T ss_pred EEecc---cChhcCCCceEEEECCCCHHHHHHHHHHHHH
Confidence 22222 3345678899999999999999999999977
No 61
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.45 E-value=0.0016 Score=57.26 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=72.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.+++.+|+|||.|.++..=++.|..+| .+||++-++.-. ++ . .+.+ ++ .++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~-------------el-----------~-~l~~-~~--~i~ 72 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK-------------EF-----------L-DLKK-YG--NLK 72 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH-------------HH-----------H-HHHh-CC--CEE
Confidence 456889999999999999999999999 559998764211 11 0 1111 22 344
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
.....+ .++.+.++++||.|+++.+....|.+.|+. .++++..+..-.
T Consensus 73 ~~~r~~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~--~~~lvn~vd~p~ 120 (223)
T PRK05562 73 LIKGNY---DKEFIKDKHLIVIATDDEKLNNKIRKHCDR--LYKLYIDCSDYK 120 (223)
T ss_pred EEeCCC---ChHHhCCCcEEEECCCCHHHHHHHHHHHHH--cCCeEEEcCCcc
Confidence 444433 456678999999999999999999999999 888877665433
No 62
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.43 E-value=0.00061 Score=62.30 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=57.3
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+++++++|+|+||+|..++..|+..|+.+|+|++.+ .+ ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~--------------~~-----~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK--------------DD-----FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC--------------ch-----HHHHHHHHHHHHhhcCCCceeEE
Confidence 457889999999999999999999999999998751 10 12467777777766555444332
Q ss_pred eecCCCC--cchhhhccCcEEEEecC
Q 023036 109 EKGDLSS--LDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~--~~~~~~~~~dvVi~~~~ 132 (288)
. ++.+ ...+.+..+|+||.|+.
T Consensus 185 ~--d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 Y--DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred e--chhhhhHHHhhhccCCEEEEeCC
Confidence 2 2221 11334567899998873
No 63
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.23 E-value=0.0011 Score=62.95 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=61.1
Q ss_pred EEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 34 ILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 34 VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
|+|+|+|.+|+.+++.|+..+-. ++++.|. ...|++.+++.+ ...++.....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence 78999999999999999999854 8999885 233444444443 22355555555
Q ss_pred CCCc--chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036 113 LSSL--DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT 155 (288)
Q Consensus 113 ~~~~--~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~ 155 (288)
..+. ..++++++|+||.|..+. ....+-+.|.+ .++++++
T Consensus 55 ~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 55 VNDPESLAELLRGCDVVINCAGPF-FGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHH--HT-EEEE
T ss_pred cCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHH--hCCCeec
Confidence 5442 366789999999998665 55567778877 7777777
No 64
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.19 E-value=0.0011 Score=60.49 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=53.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+++++|+|+|+||.|..++..|...|+.+|+|++. -..|++.+++.+.... .+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------------------t~~ka~~La~~~~~~~---~~~~ 177 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------------------NPDKLSRLVDLGVQVG---VITR 177 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------------------CHHHHHHHHHHhhhcC---ccee
Confidence 46789999999999999999999999999999864 2236777777654331 1111
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.. ...+ ....+.++|+||.|+.
T Consensus 178 ~~-~~~~-~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 178 LE-GDSG-GLAIEKAAEVLVSTVP 199 (282)
T ss_pred cc-chhh-hhhcccCCCEEEECCC
Confidence 11 0011 1234567999999974
No 65
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.18 E-value=0.0013 Score=59.95 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=54.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+++++|+|+|+||.|..++-.|+..|+.+|+|+|. ...|++.+++.+.+..+...+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------------------~~~ka~~La~~~~~~~~~~~~~~ 182 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVVG 182 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccCcceEEe
Confidence 45678999999999999999999999999999974 22377778877655444322222
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
. .... ..+...++|+||.|+.
T Consensus 183 ~--~~~~-~~~~~~~~divINaTp 203 (283)
T PRK14027 183 V--DARG-IEDVIAAADGVVNATP 203 (283)
T ss_pred c--CHhH-HHHHHhhcCEEEEcCC
Confidence 1 1111 1223467899998873
No 66
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.18 E-value=0.00097 Score=63.57 Aligned_cols=77 Identities=21% Similarity=0.158 Sum_probs=59.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|.+++|+|||+|-+|.-+|++|...|+..|+|+-. -..||+.+++++. ..+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------------------T~erA~~La~~~~-----~~~~ 227 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------------------TLERAEELAKKLG-----AEAV 227 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHhC-----Ceee
Confidence 378899999999999999999999999999999643 3347777787776 1222
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhh
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTT 136 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~ 136 (288)
.. +...+++..+|+||.++..+..
T Consensus 228 ~l-----~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 228 AL-----EELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred cH-----HHHHHhhhhCCEEEEecCCCcc
Confidence 11 1236788899999999876543
No 67
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.10 E-value=0.002 Score=58.95 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=55.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+++++|+|+|+||.+..++-.|+..|+.+|+|++.+ .+ ...|++.+++.+.+..+ ..+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt--------------~~-----~~~ka~~la~~~~~~~~-~~~~~ 181 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR--------------DE-----FFDKALAFAQRVNENTD-CVVTV 181 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC--------------cc-----HHHHHHHHHHHhhhccC-ceEEE
Confidence 467799999999999999999999999999998741 10 24588888887755332 12222
Q ss_pred eecCCCCc--chhhhccCcEEEEec
Q 023036 109 EKGDLSSL--DGEFYDKFDVVVVSC 131 (288)
Q Consensus 109 ~~~~~~~~--~~~~~~~~dvVi~~~ 131 (288)
.. +.+. ..+.+.++|+||.|+
T Consensus 182 ~~--~~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 182 TD--LADQQAFAEALASADILTNGT 204 (288)
T ss_pred ec--hhhhhhhhhhcccCCEEEECC
Confidence 21 1110 122346789999987
No 68
>PRK04148 hypothetical protein; Provisional
Probab=97.10 E-value=0.0065 Score=49.17 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
++.+|++||+| .|.++|..|+..|. .++-+|- ....++.+++. .+.+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi----------------------~~~aV~~a~~~--------~~~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDI----------------------NEKAVEKAKKL--------GLNAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHh--------CCeEE
Confidence 45789999999 99999999999995 5888885 21122222222 24566
Q ss_pred ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
..++.+.+.+..+++|+|-...-+++....|-+++++ .+.+++.....|
T Consensus 64 ~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 64 VDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred ECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 6666666788899999999999999999999999999 888888655433
No 69
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.06 E-value=0.0012 Score=63.41 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=55.1
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.+.+++|+|+|+|+.|..++++|...|+.+|+|+.. -..|++.+++.+.. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------------------t~~ra~~La~~~~~----~~-- 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------------------TIEKAQKITSAFRN----AS-- 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHhcC----Ce--
Confidence 367899999999999999999999999999999754 11256666655421 11
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChh
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~ 135 (288)
+. .+ +...+.+.++|+||.|+.++.
T Consensus 230 ~~--~~-~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 230 AH--YL-SELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred Ee--cH-HHHHHHhccCCEEEECcCCCC
Confidence 11 11 112567889999999987644
No 70
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.99 E-value=0.0022 Score=58.23 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=53.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+.+++|+|+|+||+|..+++.|...|+.++++++. ...|++.+++.+....+ +.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R----------------------~~~~a~~l~~~~~~~~~-~~~-- 175 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR----------------------TVERAEELAKLFGALGK-AEL-- 175 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc-eee--
Confidence 66789999999999999999999999999999875 22356666666654321 221
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.. ...+.+.++|+||.|+.
T Consensus 176 -~~----~~~~~~~~~DivInaTp 194 (278)
T PRK00258 176 -DL----ELQEELADFDLIINATS 194 (278)
T ss_pred -cc----cchhccccCCEEEECCc
Confidence 11 11345678999999874
No 71
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0028 Score=57.70 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=56.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
+..+|+|+|+||.+..++..|+..|+.+|+|+.. -..|++.+++.+.+..+.+.....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~~~~~~~~ 182 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGAAVEAAAL 182 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhcccccccccc
Confidence 3588999999999999999999999999999864 445888999998888873222221
Q ss_pred ecCCCCcchhhhccCcEEEEecC
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
. +. +....+|+||.|+.
T Consensus 183 ~----~~--~~~~~~dliINaTp 199 (283)
T COG0169 183 A----DL--EGLEEADLLINATP 199 (283)
T ss_pred c----cc--ccccccCEEEECCC
Confidence 1 11 11116899999874
No 72
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0022 Score=60.85 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCC-CcchHHHHHHHHHHHHHhcCCCc----------------------chhhhhhhHH
Q 023036 208 SKLYFALRVLEQFEEAEGRSPGEI-SIADLPAVLKLKKELCEANVRNF----------------------KLVFVCIIGC 264 (288)
Q Consensus 208 ~~~~~~~~aL~~f~~~~~~~P~~~-~~~d~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~ 264 (288)
...++++++..+|.+++|++|+.. ...|+..++.++..++..++.+. .+++||++||
T Consensus 413 ~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQ 492 (523)
T KOG2016|consen 413 IGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFIGGIAAQ 492 (523)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHHhhHHHH
Confidence 457889999999999999999821 24688889999999888777552 3449999999
Q ss_pred HHHHHhhccc
Q 023036 265 LVIKLQSCCT 274 (288)
Q Consensus 265 ~~i~~~~~~~ 274 (288)
|+||.++.-.
T Consensus 493 EvIKLiTkQy 502 (523)
T KOG2016|consen 493 EVIKLITKQY 502 (523)
T ss_pred HHHHHHHhce
Confidence 9999998753
No 73
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.91 E-value=0.003 Score=51.58 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=31.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998777888875
No 74
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.91 E-value=0.0069 Score=58.94 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=79.1
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|++.+|+|||.|.++..=++.|..+|. +++++-++.- +++ +++-..-+++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------~~~---------------~~l~~~~~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------PQF---------------TAWADAGMLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HHH---------------HHHHhCCCEE
Confidence 4789999999999999999999999996 5999855211 111 1111112345
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE---EEcCCeeeec
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF---VDLQNHKYSK 176 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~---~d~~~~~~~~ 176 (288)
.....+ ..+.++++++||.|+++.+...+|.+.|++ .++++-.++.-....++| ++-|+..+.-
T Consensus 60 ~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~~lvN~~d~~~~~~f~~pa~~~~g~l~iai 126 (457)
T PRK10637 60 LVEGPF---DESLLDTCWLAIAATDDDAVNQRVSEAAEA--RRIFCNVVDAPKAASFIMPSIIDRSPLMVAV 126 (457)
T ss_pred EEeCCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHHH--cCcEEEECCCcccCeEEEeeEEecCCEEEEE
Confidence 555443 356788999999999999999999999999 888876665443333332 3344544433
No 75
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.87 E-value=0.0031 Score=51.47 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=53.5
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eeee
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV 108 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~ 108 (288)
||.|||+ |.+|+.++-.|+..|+. +|.|+|. ...|++..+.-|+...+.. .+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i 59 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI----------------------NEDKAEGEALDLSHASAPLPSPVRI 59 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES----------------------SHHHHHHHHHHHHHHHHGSTEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEecc----------------------Ccccceeeehhhhhhhhhccccccc
Confidence 7999999 99999999999999986 4999986 3335666666666654333 2333
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.. ...+.+++.|+||.+..
T Consensus 60 ~~-----~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 60 TS-----GDYEALKDADIVVITAG 78 (141)
T ss_dssp EE-----SSGGGGTTESEEEETTS
T ss_pred cc-----ccccccccccEEEEecc
Confidence 32 23566889999999864
No 76
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.82 E-value=0.0022 Score=53.45 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=63.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+|.+||+|..|+.+++||..+|.. ++++|.+.-....+... |-..++...+.+++. ++-+.....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-----------g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-----------GAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-----------TEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-----------hhhhhhhhhhHhhcc--cceEeeccc
Confidence 4799999999999999999999975 88888543222222111 111111112222222 222222221
Q ss_pred C--CCCc-----chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 D--LSSL-----DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~--~~~~-----~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
. ..+. ....+..-+++|+++ .+++...++.+.+.+ +++.|+++...|.
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecc
Confidence 1 0000 112233456777765 567888899999988 9999999998874
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.76 E-value=0.016 Score=43.46 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=53.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC--CeEEEE-cCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV--GSLTLM-DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv--g~i~lv-D~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
||.|||+|.+|..+++.|+..|+ .++.++ +. ...|++.++ +..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~----~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELA----KEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHH----HHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHH----Hhhc-cccccC
Confidence 68999999999999999999995 334432 32 222333333 3333 122211
Q ss_pred ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV 156 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~ 156 (288)
...+.++..|+||.|..+......+.++ .....+..+|+.
T Consensus 54 ------~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 54 ------DNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp ------EHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred ------ChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEe
Confidence 2466778899999999876666555555 212255556654
No 78
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.71 E-value=0.0073 Score=52.69 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
.|.+++|+|||.|.+|.-=++.|..+|.. ++++-++. + . ++ ..+.+.++ +.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~-~-----------el------------~~~~~~~~---i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E-P-----------EL------------KALIEEGK---IK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c-H-----------HH------------HHHHHhcC---cc
Confidence 46789999999999999999999999955 88876643 1 1 11 11112121 23
Q ss_pred eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.... ....+.+..+++||.++++.+...++.+.|++ .++|.-.++--.+
T Consensus 60 ~~~~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~--~~i~vNv~D~p~~ 108 (210)
T COG1648 60 WIER---EFDAEDLDDAFLVIAATDDEELNERIAKAARE--RRILVNVVDDPEL 108 (210)
T ss_pred hhhc---ccChhhhcCceEEEEeCCCHHHHHHHHHHHHH--hCCceeccCCccc
Confidence 2222 23455666799999999999999999999999 8888776665544
No 79
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.69 E-value=0.011 Score=54.56 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=57.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+...+|+|+|+|.+|..++++|...|...++++|. ...|++.+++.+.. .+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------------------~~~ra~~la~~~g~-----~~~~ 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------------------TYERAEELAKELGG-----NAVP 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----eEEe
Confidence 57899999999999999999999999999999875 22345555554421 1111
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~ 144 (288)
++ ...+.+.++|+||.|+.+......+....
T Consensus 229 ----~~-~~~~~l~~aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 229 ----LD-ELLELLNEADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred ----HH-HHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence 11 12345678999999997765533333333
No 80
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.69 E-value=0.0075 Score=55.52 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=51.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eeee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV 108 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~ 108 (288)
++|.|+|+|++|+.++..|+..|+. +|.|+|. ...|++..+..|+...+.. .+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~----------------------~~~~~~~~a~dL~~~~~~~~~~~~i 58 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI----------------------NEEKAEGEALDLEDALAFLPSPVKI 58 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHhHhhHHHHhhccCCCeEE
Confidence 3799999999999999999999985 8999986 2234555566665543211 1122
Q ss_pred eecCCCCcchhhhccCcEEEEecCC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
... +.+.++++|+||.|...
T Consensus 59 ~~~-----~~~~l~~aDIVIitag~ 78 (306)
T cd05291 59 KAG-----DYSDCKDADIVVITAGA 78 (306)
T ss_pred EcC-----CHHHhCCCCEEEEccCC
Confidence 211 23347899999998753
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.016 Score=51.12 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=66.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+++|+|+|-+|..+|++|+..|-. ++++|.+. + + +.+.+++ .....++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~--------------~--------~---~~~~~~~---~~~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDE--------------E--------R---VEEFLAD---ELDTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCH--------------H--------H---HHHHhhh---hcceEEEEe
Confidence 4799999999999999999999966 77777511 0 1 1111221 112333333
Q ss_pred CCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc-eEEEEEEcC
Q 023036 112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS-CGEIFVDLQ 170 (288)
Q Consensus 112 ~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~-~G~v~~d~~ 170 (288)
+-.+ +.+.-+.++|++|.++.+......+-..+++. .++|-+.+....- +..++-..|
T Consensus 52 d~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~-~gv~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 52 DATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKE-FGVPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred cCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHcC
Confidence 2222 22334688999999998866666666555331 5788887776643 334443344
No 82
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.49 E-value=0.015 Score=53.95 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=53.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSV 108 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~~ 108 (288)
..+|.|||+|.+|+.+|-.|+..|+. .|.|+|- .+.+++..+.-|+...|.. ++..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~----------------------~~~~~~g~~~Dl~~~~~~~~~~~i 63 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI----------------------NKEKAEGDAMDLSHAVPFTSPTKI 63 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCchhHHHHHHHHhhccccCCeEE
Confidence 46899999999999999999999985 7999985 2334555566667665432 2222
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
... +.+.++++|+||.+..
T Consensus 64 ~~~-----~~~~~~~adivIitag 82 (315)
T PRK00066 64 YAG-----DYSDCKDADLVVITAG 82 (315)
T ss_pred EeC-----CHHHhCCCCEEEEecC
Confidence 221 2345799999999864
No 83
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.016 Score=57.05 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC
Q 023036 24 DAQRRLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP 102 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp 102 (288)
.-+.-+.+++|+|-|+| ++|+|+++.++..+.++|.++|. ++++-..+...+++..|
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~----------------------~E~~~~~i~~el~~~~~ 300 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR----------------------DEYKLYLIDMELREKFP 300 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC----------------------chHHHHHHHHHHHhhCC
Confidence 45667899999999966 69999999999999999999987 55566667777788777
Q ss_pred CceeeeeecCCCCcc--hhhhcc--CcEEEEe
Q 023036 103 MVRVSVEKGDLSSLD--GEFYDK--FDVVVVS 130 (288)
Q Consensus 103 ~v~v~~~~~~~~~~~--~~~~~~--~dvVi~~ 130 (288)
..++..+-.++.+.. ...+.+ .|+|+-+
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 777777777766532 445555 6777654
No 84
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.47 E-value=0.024 Score=52.10 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999995 59998873
No 85
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.46 E-value=0.052 Score=42.00 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=59.0
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCC
Q 023036 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL 113 (288)
Q Consensus 34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 113 (288)
|+|+|.|.+|.++++.|...| -.++++|.+. .+ .+.+.+.. +.+...+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~----------------------~~----~~~~~~~~----~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP----------------------ER----VEELREEG----VEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH----------------------HH----HHHHHHTT----SEEEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc----------------------HH----HHHHHhcc----cccccccc
Confidence 689999999999999999954 5699998721 12 22222222 33444444
Q ss_pred CC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036 114 SS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY 154 (288)
Q Consensus 114 ~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i 154 (288)
.+ +...-+++++.||+++++......+...+++....++.+
T Consensus 50 ~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 50 TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 43 223456789999999988888888888888744444444
No 86
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.45 E-value=0.012 Score=50.24 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v 106 (288)
.+++++++|+|. |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. .+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 999999999999998 478888641 235556666665332 2233
Q ss_pred eeeecCCCC--cchhhhccCcEEEEecCC
Q 023036 107 SVEKGDLSS--LDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 107 ~~~~~~~~~--~~~~~~~~~dvVi~~~~~ 133 (288)
... +..+ ...+.++++|+||.++..
T Consensus 81 ~~~--~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 81 GAV--ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred EEe--eCCCHHHHHHHHhcCCEEEECCCC
Confidence 322 1212 123567889999988754
No 87
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.44 E-value=0.014 Score=56.26 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999875
No 88
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=96.41 E-value=0.013 Score=56.48 Aligned_cols=69 Identities=23% Similarity=0.207 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHHHHHH-hCCCCCCCC----------------------cchHHHHHHHHHHHHHhcC-----------
Q 023036 206 KASKLYFALRVLEQFEEA-EGRSPGEIS----------------------IADLPAVLKLKKELCEANV----------- 251 (288)
Q Consensus 206 ~~~~~~~~~~aL~~f~~~-~~~~P~~~~----------------------~~d~~~~~~~~~~~~~~~~----------- 251 (288)
..+...++.+||.+|-++ ||.+|-+.. .+|++++.++++++.+..|
T Consensus 285 ~~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i 364 (425)
T cd01493 285 QSSSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEI 364 (425)
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 345678889999999887 887764331 3567778777777655433
Q ss_pred -------------------CCcchhhhhhhHHHHHHHhhccc
Q 023036 252 -------------------RNFKLVFVCIIGCLVIKLQSCCT 274 (288)
Q Consensus 252 -------------------~~~~~~~g~~~~~~~i~~~~~~~ 274 (288)
-+...++||++||||||.+|...
T Consensus 365 ~~FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t~q~ 406 (425)
T cd01493 365 KLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLITKQY 406 (425)
T ss_pred HHHHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHhccc
Confidence 12246699999999999999754
No 89
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.36 E-value=0.0034 Score=54.04 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=44.0
Q ss_pred cHHHHHHHhcCcEEEEcCchHHHH-HHHHHHHhCCCeE------EEE---cCCcCCcccccccc
Q 023036 22 GADAQRRLSKSHILVCGMKGTVAE-FCKNIVLAGVGSL------TLM---DDRVVTEEAWSANF 75 (288)
Q Consensus 22 G~~~q~~L~~~~VlIiG~gglGse-iaknL~l~Gvg~i------~lv---D~d~v~~~nl~r~f 75 (288)
+...++++++++|.|+|.|+.|++ ++..|+.+|++.+ +|+ |....+.+++++++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~ 159 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRA 159 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHH
Confidence 567899999999999999999988 9999999999987 676 66555555555543
No 90
>PLN00203 glutamyl-tRNA reductase
Probab=96.35 E-value=0.011 Score=58.49 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=53.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
|.+++|+|||+|.+|..++++|...|+.++++++. -..|++.+++.+. .+.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR----------------------s~era~~La~~~~----g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR----------------------SEERVAALREEFP----DVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC----------------------CHHHHHHHHHHhC----CCceEe
Confidence 55799999999999999999999999999999865 2225555554432 222222
Q ss_pred eecCCCCcchhhhccCcEEEEecCChh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~ 135 (288)
.. ++ ...+.+.++|+||.|+....
T Consensus 318 ~~--~~-dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 318 KP--LD-EMLACAAEADVVFTSTSSET 341 (519)
T ss_pred ec--Hh-hHHHHHhcCCEEEEccCCCC
Confidence 11 11 12456789999999975433
No 91
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.28 E-value=0.01 Score=48.34 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeecC
Q 023036 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKGD 112 (288)
Q Consensus 34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~~ 112 (288)
|+|+|+|++|+.+|-.|..+|.. +++++... +++.+.+.=-.+ .+.-+-......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~ 56 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-----------------------RLEAIKEQGLTITGPDGDETVQPPI 56 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-----------------------HHHHHHHHCEEEEETTEEEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-----------------------cHHhhhheeEEEEecccceeccccc
Confidence 78999999999999999998866 88877622 233322221111 111000000000
Q ss_pred CCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
.........+.+|+||+|+-+.+....+..+...
T Consensus 57 ~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 57 VISAPSADAGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp EESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred ccCcchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence 0000124567899999999887777777665443
No 92
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.27 E-value=0.018 Score=53.35 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=34.3
Q ss_pred ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.......++.++|.|+|+|.+|.++|+.|...|+. +..+|.
T Consensus 126 w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~ 167 (312)
T PRK15469 126 WQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSR 167 (312)
T ss_pred cCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 653333468899999999999999999999999985 777775
No 93
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.27 E-value=0.02 Score=53.20 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++..+|.|||+|.+|+.++..++..|+..+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45679999999999999999999999867999986
No 94
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.27 E-value=0.024 Score=52.34 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=51.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc---eeee
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RVSV 108 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v---~v~~ 108 (288)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.|++..+--|+...+.. ++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~a~g~a~DL~~~~~~~~~~~~~i 58 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV----------------------NEGVAEGEALDFHHATALTYSTNTKI 58 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHHHHHHHhhhccCCCCCEEE
Confidence 68999999999999999999998 57999985 2234445555566544321 2333
Q ss_pred eecCCCCcchhhhccCcEEEEecC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
... +.+.+++.|+||.+..
T Consensus 59 ~~~-----~y~~~~~aDivvitaG 77 (307)
T cd05290 59 RAG-----DYDDCADADIIVITAG 77 (307)
T ss_pred EEC-----CHHHhCCCCEEEECCC
Confidence 322 2567889999999864
No 95
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.031 Score=53.96 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 678999999999999999999999996 59999873
No 96
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.22 E-value=0.044 Score=49.79 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=27.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|+|+|++|+.++..|+.+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 6999886
No 97
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.20 E-value=0.019 Score=47.46 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=57.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|.|+|+|..|+.+|..|+..| .+++|++.+.-..+.+..+-. -...-|.+.+.... .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~--------------------n~~~~~~~~l~~~i-~ 58 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ--------------------NPKYLPGIKLPENI-K 58 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS--------------------ETTTSTTSBEETTE-E
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC--------------------CCCCCCCcccCccc-c
Confidence 6899999999999999999999 678888764311111111000 00011111111100 0
Q ss_pred CCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.+...++.+++.|+||.+.-+...+..+.++...++.+.+++. .+-|+
T Consensus 59 ~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~-~~KG~ 106 (157)
T PF01210_consen 59 ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS-ATKGF 106 (157)
T ss_dssp EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE-TS-SE
T ss_pred cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE-ecCCc
Confidence 1122356789999999999887776666666553335566554 33444
No 98
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.09 E-value=0.02 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.++.+|.|||+|.+|+.++-.|+..|+..+.|+|-
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35679999999999999999999999888999996
No 99
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.08 E-value=0.014 Score=53.55 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=68.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~ 111 (288)
+|.|||+|.+|+.++++|+..|. +++++|.+.-....+.. . |-..+....+.++.. ++++-+...+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------E---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------C---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 69999999999999999999996 48888875322211110 1 211111122223332 35554444443
Q ss_pred CC--CCcc---hhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 DL--SSLD---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~~--~~~~---~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.. .+.. ...++.-++||+++ .++.....+.+.+++ .++.|+++...|.
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~ 123 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGG 123 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcC
Confidence 21 1111 12234456777775 455666678888988 8999999887774
No 100
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.08 E-value=0.033 Score=53.68 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=62.3
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+...+|+|+|+|.+|..+++.|...|.. ++++|.+. .+.+ .+++..+.+ ..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~----------------------~~~~----~~~~~~~~~--~~ 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP----------------------ERAE----ELAEELPNT--LV 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH----------------------HHHH----HHHHHCCCC--eE
Confidence 5678999999999999999999998875 88888621 1222 222222222 22
Q ss_pred eecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036 109 EKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV 156 (288)
Q Consensus 109 ~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~ 156 (288)
...+..+ +....++++|.||.++.+......+...|++ .+.+.+.+
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~--~~~~~ii~ 328 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKR--LGAKKVIA 328 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHH--hCCCeEEE
Confidence 3333322 1233467899999988776666667777887 55444433
No 101
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.02 E-value=0.029 Score=51.96 Aligned_cols=97 Identities=15% Similarity=0.047 Sum_probs=60.8
Q ss_pred HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036 25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV 104 (288)
Q Consensus 25 ~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v 104 (288)
....|++++|.|||+|.+|..+|+||..+|+. +.+.|+. ++.... + .+. .+
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~---------------------~~s~~~--A---~~~--G~ 60 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRP---------------------GKSFEV--A---KAD--GF 60 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECc---------------------chhhHH--H---HHc--CC
Confidence 34689999999999999999999999999985 6666531 100000 0 010 11
Q ss_pred eeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHH-HHHHhcCCCceEEEEee
Q 023036 105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLIN-EKCRKLSKRVAFYTVDC 158 (288)
Q Consensus 105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~-~~~~~~~~~ip~i~~~~ 158 (288)
.+ . ...+.++..|+|+.+..+..++..++ +....++.+.-++.+..
T Consensus 61 ~v--~------sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 61 EV--M------SVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EE--C------CHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 11 1 13577889999999876655555554 34444344554554443
No 102
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.02 E-value=0.047 Score=50.12 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=27.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+|.|+|+|.+|+.++.+|+..|.. ++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence 699999999999999999999965 8888863
No 103
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.94 E-value=0.041 Score=50.76 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD 62 (288)
.+|+|+|+|++|+-.+-.|.++| ..++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 47999999999999999999999 7666653
No 104
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.94 E-value=0.0094 Score=52.57 Aligned_cols=37 Identities=14% Similarity=0.389 Sum_probs=34.8
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d 64 (288)
.+++.+|+|+|+|+.|..+++.|+..|+. +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999985
No 105
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.93 E-value=0.047 Score=50.11 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=28.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++|.|||+|.+|+.++..|+..|. .++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 479999999999999999999996 5888885
No 106
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.92 E-value=0.051 Score=50.57 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=57.7
Q ss_pred HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR 105 (288)
Q Consensus 26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~ 105 (288)
-..++.++|.|+|+|++|.++|+.|.-.| ..|.-..... . +-+...+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~--------------------~--~~~~~~~~~~~------ 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ--------------------L--PPEEAYEYYAE------ 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC--------------------C--chhhHHHhccc------
Confidence 45789999999999999999999999977 4343322100 0 11111111111
Q ss_pred eeeeecCCCCcchhhhccCcEEEEec-CChhhHHHHHH-HHHhcCCCceEEE
Q 023036 106 VSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINE-KCRKLSKRVAFYT 155 (288)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~i~~-~~~~~~~~ip~i~ 155 (288)
. ...++++.++|+||+|. .+.+++-.+|+ .+.+++.+..++.
T Consensus 208 ----~----~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 208 ----F----VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred ----c----cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEe
Confidence 1 12367888999887775 67778878886 3444344444443
No 107
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.92 E-value=0.03 Score=52.17 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=30.3
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD 62 (288)
..|++++|.|||+|.+|..+|+||..+|+ ++.+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 46788999999999999999999999998 455544
No 108
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.90 E-value=0.018 Score=55.46 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+.+|+|+|+|.+|..+++.|...|+..++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999875
No 109
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.89 E-value=0.026 Score=54.47 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=74.6
Q ss_pred CCCHHHHHhhhhhhhhccHHHH----HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCC
Q 023036 5 ELTEQETALYDRQIRVWGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80 (288)
Q Consensus 5 ~l~~~e~~rYdRqirl~G~~~q----~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~ 80 (288)
+|+-.+.-.--+|-|+|+.+.. ..|++++|+|||+|+.|..-|.||--+|+. +++- ++++
T Consensus 6 ~~~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvg---------------lr~~ 69 (487)
T PRK05225 6 TLNLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLD-ISYA---------------LRKE 69 (487)
T ss_pred cccHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccce-eEEe---------------cccc
Confidence 4554444444567789998776 789999999999999999999999999986 3321 1222
Q ss_pred ccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 81 di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
.|+..+++...+..+ ...+ ....+.++..|+|++...+........++...++.+.-+..+..+.
T Consensus 70 ~id~~~~s~~kA~~d-------GF~v--------~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFn 134 (487)
T PRK05225 70 AIAEKRASWRKATEN-------GFKV--------GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFN 134 (487)
T ss_pred ccccccchHHHHHhc-------CCcc--------CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCce
Confidence 221112222221111 1111 1145678899999988755443333344555544555565554443
No 110
>PRK07680 late competence protein ComER; Validated
Probab=95.89 E-value=0.076 Score=47.89 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=26.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~ 63 (288)
+|.|||+|.+|+.+++.|...|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 59999999999999999999984 45666654
No 111
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.89 E-value=0.042 Score=51.08 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=56.5
Q ss_pred cCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
.++++|+|+|+.|...++.|. ..|+.+++|++. ...|++.+++++++..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~~ 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTAA 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 468999999999999999997 578899999865 44578888888865432 333322
Q ss_pred ecCCCCcchhhhccCcEEEEecCCh
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
+...+.+.++|+||.|+.+.
T Consensus 186 -----~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 186 -----TDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred -----CCHHHHhccCCEEEEecCCC
Confidence 12355678999999998653
No 112
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.89 E-value=0.034 Score=51.08 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eeeeeec
Q 023036 34 ILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSVEKG 111 (288)
Q Consensus 34 VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~~~~~ 111 (288)
|.|||+|.+|+.+|-.|+..|+ .+++++|. -+.|++..+..|.+..+.. .......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~----------------------~~~~~~g~~~DL~~~~~~~~~~~i~~~ 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV----------------------NEEKAKGDALDLSHASAFLATGTIVRG 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHhHHHhccccCCCeEEEC
Confidence 5799999999999999999997 56999996 3335666666777765541 1111111
Q ss_pred CCCCcchhhhccCcEEEEecCC
Q 023036 112 DLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 112 ~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
.+.+.++++|+||+|...
T Consensus 59 ----~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 59 ----GDYADAADADIVVITAGA 76 (300)
T ss_pred ----CCHHHhCCCCEEEEcCCC
Confidence 124578899999998753
No 113
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.86 E-value=0.053 Score=49.77 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=29.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888876
No 114
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.84 E-value=0.041 Score=50.91 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=56.5
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v 106 (288)
+-..++|+|+|+|..|..+++.+.+ .|+.++++++. ...|++.+++.+++... .+
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g~--~~ 177 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQGF--DA 177 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ce
Confidence 3457899999999999999997765 67889999875 44578888888776422 22
Q ss_pred eeeecCCCCcchhhhccCcEEEEecCCh
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
... +...+.+.++|+||.++.+.
T Consensus 178 ~~~-----~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 178 EVV-----TDLEAAVRQADIISCATLST 200 (314)
T ss_pred EEe-----CCHHHHHhcCCEEEEeeCCC
Confidence 322 12345678999998887654
No 115
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.82 E-value=0.069 Score=49.40 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=26.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.|+|+|++|+.++..|+..| ..+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence 5999999999999999999999 45788875
No 116
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.80 E-value=0.022 Score=47.96 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCchH-HHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGT-VAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~ggl-GseiaknL~l~Gvg~i~lvD~ 63 (288)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999998 5888774
No 117
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.80 E-value=0.032 Score=50.59 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=30.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++|+|+|+||.+..++-.|...|+.+++|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999875
No 118
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.79 E-value=0.053 Score=57.61 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=22.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAG 54 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~G 54 (288)
+.++|+|+|+|.+|..++++|+..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~ 592 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVK 592 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCc
Confidence 5679999999999999999998753
No 119
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.77 E-value=0.051 Score=50.26 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc---ee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RV 106 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v---~v 106 (288)
..+|.|||+|.+|+.+|-.|+..|.. +|.|+|- .+.|++..+.-|+...|.. ++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~----------------------~~~~~~g~a~Dl~~~~~~~~~~~v 60 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV----------------------VEDKLKGEAMDLQHGSAFLKNPKI 60 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHHHHHhhccCCCCEE
Confidence 35899999999999999999999985 6999985 2224445555566555432 22
Q ss_pred eeeecCCCCcchhhhccCcEEEEecC
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
... . +.+.++++|+||.|..
T Consensus 61 ~~~-~-----dy~~~~~adivvitaG 80 (312)
T cd05293 61 EAD-K-----DYSVTANSKVVIVTAG 80 (312)
T ss_pred EEC-C-----CHHHhCCCCEEEECCC
Confidence 221 1 2345899999999654
No 120
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.77 E-value=0.036 Score=50.42 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=28.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|.|||+|.+|+.+|..|+..|. .++++|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeC
Confidence 579999999999999999999996 5999985
No 121
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.76 E-value=0.13 Score=40.90 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=58.4
Q ss_pred cEEEEcC-chHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 33 HILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|... ++ + -..|+ | +.+..-. ..+...
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~-----~-~g~d~---g--------~~~~~~~--~~~~v~- 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA-----K-VGKDV---G--------ELAGIGP--LGVPVT- 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST-----T-TTSBC---H--------HHCTSST---SSBEB-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc-----c-ccchh---h--------hhhCcCC--cccccc-
Confidence 7999999 9999999999999 6765555566532 00 0 12233 2 1111111 122222
Q ss_pred cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
+..++.+..+|+||+.+ +++.....-++|.+ +++|++. ++.|+
T Consensus 59 ----~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~--~g~~~Vi-GTTG~ 101 (124)
T PF01113_consen 59 ----DDLEELLEEADVVIDFT-NPDAVYDNLEYALK--HGVPLVI-GTTGF 101 (124)
T ss_dssp ----S-HHHHTTH-SEEEEES--HHHHHHHHHHHHH--HT-EEEE-E-SSS
T ss_pred ----hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHh--CCCCEEE-ECCCC
Confidence 22356666799999998 66777778888888 8899886 44443
No 122
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.67 E-value=0.11 Score=43.14 Aligned_cols=93 Identities=24% Similarity=0.227 Sum_probs=59.9
Q ss_pred EEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 34 VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
|+|+|+ |.+|..+++.|...| .+++.+=. ...|.+. .+ .++....+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------------------~~~~~~~--------~~--~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------------------SPSKAED--------SP--GVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------------------SGGGHHH--------CT--TEEEEESC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------------------Cchhccc--------cc--ccccceee
Confidence 789997 889999999999999 55666422 1122222 44 45555555
Q ss_pred CCCc--chhhhccCcEEEEecCC----hhhHHHHHHHHHhcCCCce-EEEEeeecc
Q 023036 113 LSSL--DGEFYDKFDVVVVSCCS----VTTKKLINEKCRKLSKRVA-FYTVDCRDS 161 (288)
Q Consensus 113 ~~~~--~~~~~~~~dvVi~~~~~----~~~~~~i~~~~~~~~~~ip-~i~~~~~G~ 161 (288)
+.+. ..+.++++|.||.+... ......+-+.|++ .+++ ++..++.|.
T Consensus 48 ~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~--~~~~~~v~~s~~~~ 101 (183)
T PF13460_consen 48 LFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKK--AGVKRVVYLSSAGV 101 (183)
T ss_dssp TTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHH--TTSSEEEEEEETTG
T ss_pred ehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccc--cccccceeeecccc
Confidence 5543 25567899999998753 3334566777777 6664 445455553
No 123
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.66 E-value=0.1 Score=46.68 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=26.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD~ 63 (288)
.+|.|||+|.+|..++..|...|. ..+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999984 34666654
No 124
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.057 Score=49.25 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|.|||+|..|+.+|.+++++|.. ++++|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECC
Confidence 4899999999999999999999975 9999864
No 125
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.62 E-value=0.047 Score=50.30 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=57.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v 106 (288)
+....+++|+|+|..|...++.+.. .|+.++.++|. ...|++.+++++++.+. .+
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~~--~~ 177 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALGP--TA 177 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ee
Confidence 3456899999999999999999974 68888999875 44578888888876432 22
Q ss_pred eeeecCCCCcchhhhccCcEEEEecCCh
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
. . +..++.+.++|+||.|+.+.
T Consensus 178 ~--~----~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 178 E--P----LDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred E--E----CCHHHHhhcCCEEEEccCCC
Confidence 2 1 12355678999999998654
No 126
>PLN02602 lactate dehydrogenase
Probab=95.62 E-value=0.057 Score=50.78 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=51.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC---ceee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VRVS 107 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~---v~v~ 107 (288)
.+|.|||+|.+|+.+|-.|+..|+ .+|.|+|- .+.|++..+.-|+...|. +++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi----------------------~~~~~~g~a~DL~~~~~~~~~~~i~ 95 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV----------------------NPDKLRGEMLDLQHAAAFLPRTKIL 95 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCchhhHHHHHHHhhhhcCCCCEEE
Confidence 699999999999999999999998 57999985 222344445555554332 3332
Q ss_pred eeecCCCCcchhhhccCcEEEEecC
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.. .+.+.++++|+||.+..
T Consensus 96 ~~------~dy~~~~daDiVVitAG 114 (350)
T PLN02602 96 AS------TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred eC------CCHHHhCCCCEEEECCC
Confidence 21 12355899999999854
No 127
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.60 E-value=0.082 Score=47.88 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=27.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.|||+|.+|..+++.|...|. .++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999996 5888886
No 128
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.57 E-value=0.09 Score=53.23 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=63.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|. .+++.++ +. . ..++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~----------------------~~v~~~~----~~--g--~~v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDP----------------------DHIETLR----KF--G--MKVFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCH----------------------HHHHHHH----hc--C--CeEEE
Confidence 57999999999999999999999986 89988732 2333332 21 1 23333
Q ss_pred cCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036 111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (288)
Q Consensus 111 ~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip 152 (288)
.+.++. ...-++++++||+++++.+....+-..+|+...+++
T Consensus 449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 333321 233466899999999998888888888887333343
No 129
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.55 E-value=0.076 Score=49.33 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=56.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
...+++|+|+|+.|...+..+. ..|+.++.|+|. ...|++.+++.+++..+ +++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence 4678999999999998888775 568999999875 34477777777765432 23333
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTT 136 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~ 136 (288)
.. ..++.++++|+||.|+.+...
T Consensus 183 ~~-----~~~~~~~~aDiVi~aT~s~~p 205 (325)
T PRK08618 183 VN-----SADEAIEEADIIVTVTNAKTP 205 (325)
T ss_pred eC-----CHHHHHhcCCEEEEccCCCCc
Confidence 21 135567899999999876543
No 130
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.51 E-value=0.068 Score=49.68 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=29.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
++|.|||+|.+|+.+|.+++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999976 89999743
No 131
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.49 E-value=0.1 Score=52.55 Aligned_cols=93 Identities=14% Similarity=0.295 Sum_probs=63.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+.+|+|+|.|.+|..+++.|...|+. ++++|.|. .+++.+ ++. ...++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~----------------------~~v~~~----~~~----g~~v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDI----------------------SAVNLM----RKY----GYKVYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCH----------------------HHHHHH----HhC----CCeEEE
Confidence 57899999999999999999999986 89999732 122222 222 123333
Q ss_pred cCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036 111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY 154 (288)
Q Consensus 111 ~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i 154 (288)
.+..+ ....-++++|+||.+.++.+....+-..+|+...+.+.+
T Consensus 449 GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 449 GDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred eeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 33332 123346789999999999888888888888733344443
No 132
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.046 Score=49.78 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=32.8
Q ss_pred ccHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 21 WGADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 21 ~G~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|+......+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4443445678889999995 7999999999999997 4777654
No 133
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.48 E-value=0.15 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV 55 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv 55 (288)
...+|.|||+|.+|..++++|...|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC
Confidence 34589999999999999999999983
No 134
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.46 E-value=0.17 Score=44.06 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=50.3
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC--ceeeee
Q 023036 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVSVE 109 (288)
Q Consensus 33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~--v~v~~~ 109 (288)
+|.||| +|.+|+.+++.|+..| .+++++|. ...+++.+.+........ +.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR----------------------DLEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc----------------------CHHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 56777764 222333333322111100 111111
Q ss_pred ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~ 144 (288)
.. ...+..+++|+||+|.-.......+.++.
T Consensus 59 ~~----~~~ea~~~aDvVilavp~~~~~~~l~~l~ 89 (219)
T TIGR01915 59 GA----DNAEAAKRADVVILAVPWDHVLKTLESLR 89 (219)
T ss_pred Ee----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence 11 12455778999999987665555554443
No 135
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.46 E-value=0.085 Score=48.00 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=27.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999995 4888875
No 136
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.42 E-value=0.14 Score=45.10 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV 55 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv 55 (288)
+..+|.|||+|.+|..+++.|...|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999998873
No 137
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.41 E-value=0.15 Score=46.21 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=26.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~ 63 (288)
+.+|.+||+|-+|..++++|...|. .+|.++|.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r 37 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL 37 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence 4589999999999999999999885 24665553
No 138
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.34 E-value=0.045 Score=50.08 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=45.3
Q ss_pred EEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee----e
Q 023036 34 ILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS----V 108 (288)
Q Consensus 34 VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~----~ 108 (288)
|||-| +|++|+|+++.|+..|..+|.++|. +.++--.+.+.+++..|+-++. .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~----------------------~E~~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDR----------------------DENKLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-----------------------HHHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCC----------------------ChhHHHHHHHHHhhcccccCcccccCc
Confidence 67887 6679999999999999999999997 4444455566665554442222 3
Q ss_pred eecCCCCc--chhhhc--cCcEEEEec
Q 023036 109 EKGDLSSL--DGEFYD--KFDVVVVSC 131 (288)
Q Consensus 109 ~~~~~~~~--~~~~~~--~~dvVi~~~ 131 (288)
...++.+. ....++ +.|+|+-+.
T Consensus 59 vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 59 VIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp -CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred eeecccCHHHHHHHHhhcCCCEEEECh
Confidence 34444332 133445 677887654
No 139
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.24 E-value=0.14 Score=46.92 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+|.|||+|.+|..++.+|+..|. .++++|.+.-....+... |...+....+.+++ .++-+...+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~-----------g~~~~~s~~~~~~~--aDvVi~~vp~ 67 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDK-----------GATPAASPAQAAAG--AEFVITMLPN 67 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHc-----------CCcccCCHHHHHhc--CCEEEEecCC
Confidence 379999999999999999999995 689988743222221110 11111111111111 1222222222
Q ss_pred CC--CCc---chh---hhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 DL--SSL---DGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~~--~~~---~~~---~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.. ... ... .++.-.+||+++ .++....++.+.+.+ .++.|+++...|.
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~ 124 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRT 124 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCC
Confidence 10 000 001 122233555544 456667778888877 7888888877664
No 140
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.19 E-value=0.059 Score=50.11 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=38.8
Q ss_pred hhhhhhhh--ccHHHH--HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 13 LYDRQIRV--WGADAQ--RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 13 rYdRqirl--~G~~~q--~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++|.+- |-.... ..|..++|.|||+|.+|+.+++-|.-.|+. +..+|+
T Consensus 120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred hhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 35555543 544212 267899999999999999999999999988 777787
No 141
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.12 E-value=0.14 Score=45.92 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=33.0
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEcCC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDR 64 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~----Gv------g~i~lvD~d 64 (288)
++|++.||+++|+|+.|.-|++.|+.+ |+ ++|.++|.+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 369999999999999999999999999 99 899999985
No 142
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.12 E-value=0.22 Score=39.19 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=52.8
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 33 HILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG-~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
||.|+| .|-+|.++++.|...-- .-+.++.. ..+. |+.-.+... .....-++....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~---g~~~~~~~~----~~~~~~~~~~~~ 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSA---GKPLSEVFP----HPKGFEDLSVED 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTT---TSBHHHTTG----GGTTTEEEBEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------cccc---CCeeehhcc----ccccccceeEee
Confidence 699999 88899999999988322 22333332 1112 443222111 111122233322
Q ss_pred cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD 157 (288)
Q Consensus 111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~ 157 (288)
.+.+.+++.|+||.|..+.........+ .+ .++++|+..
T Consensus 59 -----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~--~g~~ViD~s 97 (121)
T PF01118_consen 59 -----ADPEELSDVDVVFLALPHGASKELAPKL-LK--AGIKVIDLS 97 (121)
T ss_dssp -----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HH--TTSEEEESS
T ss_pred -----cchhHhhcCCEEEecCchhHHHHHHHHH-hh--CCcEEEeCC
Confidence 2345568999999998776655554444 55 677777543
No 143
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.096 Score=48.10 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++++|.|+ +|+|.++++.|+..|. ++.+++.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R 46 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR 46 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 467789999984 5899999999999996 5777654
No 144
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.12 Score=47.88 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=27.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|.|+|+|.+|+.++.+|+..|. .++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 379999999999999999999995 4888876
No 145
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.15 Score=49.66 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5677999999999999999999999975 9999863
No 146
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.07 E-value=0.26 Score=44.44 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=29.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++|+|+|+|++|..++..|+..|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999996 7999874
No 147
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.06 E-value=0.26 Score=44.79 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEcCCc
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRV 65 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~----Gv------g~i~lvD~d~ 65 (288)
++|++.+|+++|+|+.|.-|++.|+.+ |+ ++|.++|.+-
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 578899999999999999999999998 99 6999999754
No 148
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.06 E-value=0.22 Score=44.49 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=24.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC---CeEEEE
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLM 61 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lv 61 (288)
+|.+||+|.+|..++++|...|. ..++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245555
No 149
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.05 E-value=0.15 Score=46.42 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=28.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 47888864
No 150
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.12 Score=45.67 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 467889999995 68999999999999975 777764
No 151
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.33 Score=44.16 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=29.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..++|.|||+|..|+.+|.+|+.+|. .++++|.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~ 35 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDV 35 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 34689999999999999999999996 5889886
No 152
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.03 E-value=0.25 Score=42.60 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.|++++|+|+|+|.+|..++++|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999996 57888864
No 153
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.03 E-value=0.024 Score=47.94 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
.....|.+++|.|+|+|.+|.++|+-|...|+ ++..+|...
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 33457899999999999999999999999998 688888733
No 154
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.14 Score=46.53 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|.+|+.+|..|+..|. .++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 59999864
No 155
>PRK07574 formate dehydrogenase; Provisional
Probab=95.02 E-value=0.09 Score=50.08 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|||+|.+|.++|+.|...|+. +..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECC
Confidence 468999999999999999999999999985 777775
No 156
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.02 E-value=0.24 Score=45.36 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=29.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|.|||+|.+|+.+|..++..|.+.+.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998769999986
No 157
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.02 E-value=0.13 Score=47.86 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=54.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
.++++|+|+|+.|...+..+.. .|+.+++|++. ...|++.+++.+++..+ +++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~g-~~v~~~ 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAELG-IPVTVA 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccC-ceEEEe
Confidence 4689999999999999999985 57899999865 44477778877765332 333322
Q ss_pred ecCCCCcchhhhccCcEEEEecCCh
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
. ...+.+.++|+||.|+.+.
T Consensus 189 ~-----d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 R-----DVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred C-----CHHHHHccCCEEEEeeCCC
Confidence 1 1345677899999988653
No 158
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.99 E-value=0.25 Score=44.73 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=26.1
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~ 63 (288)
+|.|||+|.+|..+++.|...|. .++.++|.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 69999999999999999999983 45666654
No 159
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.95 E-value=0.098 Score=51.41 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=72.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc---HHHHHHHHHhhh-CCCceee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT---IAEVCCDSLKDF-NPMVRVS 107 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~---Ka~~~~~~l~~l-Np~v~v~ 107 (288)
.+|.+||+|..|+.+|+||+..|.. ++++|.+.=....+... .... |.. -+....+..+.+ .|++-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999999999975 89988643221221110 0000 100 112223333333 3555444
Q ss_pred eeecCC--CCc---chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 108 VEKGDL--SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 108 ~~~~~~--~~~---~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.....- ++. ....++.=|+||+++. +++...++.+.+.+ +++.|+.+...|.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG 136 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGG 136 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCC
Confidence 433221 111 1223455689998865 46777788899988 9999999998874
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.95 E-value=0.042 Score=39.85 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=39.2
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN 101 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN 101 (288)
||+|||.|.+|+|+|..|...|. +++|++...- ++ ... +..-++.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~---~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGF---DPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTS---SHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhc---CHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 6899886221 11 112 4444566677777774
No 161
>PLN03139 formate dehydrogenase; Provisional
Probab=94.94 E-value=0.1 Score=49.64 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999999986 677775
No 162
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.94 E-value=0.15 Score=47.79 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHH-hCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l-~Gvg~i~lvD~ 63 (288)
.|++++|+|+|+ |.+|+++++.|.. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 578899999998 7999999999985 58999999875
No 163
>PRK09242 tropinone reductase; Provisional
Probab=94.93 E-value=0.16 Score=44.71 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=52.8
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV 106 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v 106 (288)
+|++++++|.|+ |++|.++++.|+..|. ++.+++.+ ..+.+.+.+.+.+.+|..++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~ 62 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREV 62 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeE
Confidence 467889999995 6999999999999996 47777641 11334445556666666666
Q ss_pred eeeecCCCCcc---------hhhhccCcEEEEec
Q 023036 107 SVEKGDLSSLD---------GEFYDKFDVVVVSC 131 (288)
Q Consensus 107 ~~~~~~~~~~~---------~~~~~~~dvVi~~~ 131 (288)
..+..++.+.. .+.+...|+||.+.
T Consensus 63 ~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 63 HGLAADVSDDEDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 66655554321 11234577777765
No 164
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.92 E-value=0.21 Score=49.82 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=29.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.||+|+|+|.+|.++++.|...|.. ++++|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCC-EEEEEC
Confidence 57999999999999999999999975 899987
No 165
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.22 Score=45.24 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|.|||+|.+|..+|.+|+..|.. ++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCC
Confidence 4799999999999999999999964 8999874
No 166
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.91 E-value=0.083 Score=48.38 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=65.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~ 111 (288)
+|.|||+|.+|+.++++|+..|. .++++|.+.-....+... |...+....+....+ .+++-+...+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcCCCCEEEEEcCc
Confidence 69999999999999999999995 478888654322222211 111111111111111 24443333332
Q ss_pred CC-CCcc---hhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 DL-SSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~~-~~~~---~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.. .+.. ...++.=++||+++.. +....++.+.+.+ .++.|+.+...|.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg 122 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGG 122 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCC
Confidence 21 1111 1223444788887543 4555666777777 8899999988864
No 167
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.91 E-value=0.062 Score=52.49 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~ 111 (288)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+.- .. +-.-+....+..+.+ .|++-+...+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~-g~-----~~~~~~s~~e~v~~l~~~dvIil~v~~ 73 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAK-GK-----KIVGAYSIEEFVQSLERPRKIMLMVKA 73 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccC-CC-----CceecCCHHHHHhhcCCCCEEEEECCC
Confidence 48899999999999999999997 588988754332222211000 00 000111122333333 35544443332
Q ss_pred C--CCCc---chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 D--LSSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~--~~~~---~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
. +.+. ....++.=|+||++.. .+....+..+.+.+ +++.|+.+.+.|.
T Consensus 74 ~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG 127 (467)
T TIGR00873 74 GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGG 127 (467)
T ss_pred cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCC
Confidence 1 1111 1223455689998874 44555555667877 8999999998874
No 168
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.90 E-value=0.2 Score=46.86 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=57.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+|+|+|+|+.|+.++..|+..| .++++..+.-....++..-. ..... +. -..+.+. +...
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l---~~---------~~~l~~~--i~~t-- 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYL---GN---------DVVLSDT--LRAT-- 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccC---CC---------CcccCCC--eEEE--
Confidence 57999999999999999999998 35655432211111111100 00000 00 0011111 1111
Q ss_pred CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
....+.++++|+||++.-+...+..+.++....+.+.+++... .|+
T Consensus 69 ---~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~-kGi 114 (341)
T PRK12439 69 ---TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV-KGL 114 (341)
T ss_pred ---CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE-eCC
Confidence 1123456789999999987766666666554433455565443 354
No 169
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.90 E-value=0.059 Score=47.44 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=57.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
+.+++++++| +||+|-+++|.|...|+....|.|. .+.+ .+..+|++.||.+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En~---------~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EENP---------EAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhCH---------HHHHHHhccCCCceEE
Confidence 4577888876 9999999999999999997777654 1111 3456899999999999
Q ss_pred eeecCCCCcc---------hhhhccCcEEEEe
Q 023036 108 VEKGDLSSLD---------GEFYDKFDVVVVS 130 (288)
Q Consensus 108 ~~~~~~~~~~---------~~~~~~~dvVi~~ 130 (288)
.+..++.... -..+...|++|..
T Consensus 59 F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 59 FIKCDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred EEEeccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 9988876421 1224567888764
No 170
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.19 Score=45.52 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=28.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999997 58998863
No 171
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.89 E-value=0.1 Score=48.14 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=28.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
+|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 77999995
No 172
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.83 E-value=0.23 Score=45.27 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999995 58999863
No 173
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.14 Score=47.08 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCC
Confidence 369999999999999999999997 59999975
No 174
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.82 E-value=0.049 Score=53.22 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=70.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC--cHHHHHHHHHhhh-CCCceeee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--TIAEVCCDSLKDF-NPMVRVSV 108 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~--~Ka~~~~~~l~~l-Np~v~v~~ 108 (288)
++|.|||+|..|+.+|.||+..|. +++++|.+.-....+... ...- |. ..+....+.++.+ .|++-+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~---g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEG---NTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhc---CCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999997 599998643322222110 0000 10 0111223334433 35433333
Q ss_pred eecC--CCCc---chhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 109 EKGD--LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 109 ~~~~--~~~~---~~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.... +.+. ....++.-|+||++... +....+..+.+.+ +++.|+.+.+.|.
T Consensus 74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG 130 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGG 130 (470)
T ss_pred eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCC
Confidence 2211 1111 12335556899988654 5555566678878 8999999998874
No 175
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.81 E-value=0.15 Score=48.67 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=58.3
Q ss_pred HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036 26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR 105 (288)
Q Consensus 26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~ 105 (288)
+...++.||+|+|.|.+|.++++.|...|. .++++|++.++.. . ++ |
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~-------~~-----g------------------- 281 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-L-------PD-----D------------------- 281 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-c-------cC-----C-------------------
Confidence 444557899999999999999999998886 4888887522100 0 00 1
Q ss_pred eeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcC
Q 023036 106 VSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS 148 (288)
Q Consensus 106 v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~ 148 (288)
......+..+ +...-+++++.||.++++.+....+-..+|+.+
T Consensus 282 ~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 282 ADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 1122223222 123346688899998887777666767777733
No 176
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.80 E-value=0.1 Score=48.54 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM 103 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gv-g-----~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~ 103 (288)
.+|.|||+ |.+|+.+|-.|+..|+ + +|.|+|-. + .+.|++..+.-|+... |.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~---------------~-----~~~~a~g~a~Dl~~~~~~~ 63 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIP---------------P-----AMKALEGVAMELEDCAFPL 63 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecC---------------C-----cccccchHHHHHhhccccc
Confidence 47999998 9999999999999997 4 58888851 1 1223444455555554 33
Q ss_pred ce-eeeeecCCCCcchhhhccCcEEEEecC
Q 023036 104 VR-VSVEKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 104 v~-v~~~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.. +... ..+.+.++++|+||.+..
T Consensus 64 ~~~~~i~-----~~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 64 LAGVVAT-----TDPEEAFKDVDAALLVGA 88 (323)
T ss_pred cCCcEEe-----cChHHHhCCCCEEEEeCC
Confidence 22 1111 124577899999999865
No 177
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.80 E-value=0.19 Score=46.33 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=29.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+.+|+|+|+|++|+-++..|+.+| ..+++++.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 468999999999999999999999 4588887654
No 178
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.78 E-value=0.24 Score=45.50 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=29.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
..+|.|+|+|.+|+.++++|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999995 58888864
No 179
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.74 E-value=0.057 Score=39.90 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+..++++|+|+|..|.-++..|...|...+.++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999998889999988
No 180
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.70 E-value=0.23 Score=45.13 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=28.2
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999996 588888653
No 181
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.70 E-value=0.24 Score=45.25 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 7888875
No 182
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.69 E-value=0.18 Score=48.65 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+.+++|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d 244 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD 244 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3588999999999999999999999998 69998863
No 183
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.67 E-value=0.086 Score=47.23 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC----------eEEEEcCCc
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG----------SLTLMDDRV 65 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg----------~i~lvD~d~ 65 (288)
++|++.||+++|+|+.|.-+++.|..+|+. +|.++|.+-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 478999999999999999999999999997 899999754
No 184
>PLN02240 UDP-glucose 4-epimerase
Probab=94.66 E-value=0.41 Score=44.22 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 7899999999999995 5888774
No 185
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.23 Score=43.34 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=41.7
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
+++++|.| .|++|.++++.|+..|. ++.+++.+. .+.+.+...+.+.+|..++...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT----------------------DRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 56789998 67899999999999995 577776521 1233444455555666666666
Q ss_pred ecCCCC
Q 023036 110 KGDLSS 115 (288)
Q Consensus 110 ~~~~~~ 115 (288)
..++.+
T Consensus 59 ~~D~~~ 64 (248)
T PRK08251 59 ALDVND 64 (248)
T ss_pred EcCCCC
Confidence 555543
No 186
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.58 E-value=0.21 Score=46.30 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 58898863
No 187
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.57 E-value=0.3 Score=47.02 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=54.1
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|+|+|+|.+|..+++.|...|.. ++++|.+ ..+++.+. + . ..+.....+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~----------------------~~~~~~~~----~-~--~~~~~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTD----------------------EERLRRLQ----D-R--LDVRTVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEECC----------------------HHHHHHHH----h-h--cCEEEEEeC
Confidence 799999999999999999999975 7888751 11222222 1 0 123333333
Q ss_pred CCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 113 LSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 113 ~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
..+. ...-++++|.||.++.+......+...+++
T Consensus 52 ~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~ 88 (453)
T PRK09496 52 GSSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKS 88 (453)
T ss_pred CCCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence 3221 122367899999988776666666677777
No 188
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.57 E-value=0.27 Score=48.38 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=28.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999997 59999873
No 189
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.57 E-value=0.14 Score=48.43 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+...+|+|+|+|.+|..+++.+...|+ +++++|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEEC
Confidence 567889999999999999999999998 5999986
No 190
>PLN02427 UDP-apiose/xylose synthase
Probab=94.53 E-value=0.29 Score=46.13 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++++..+|+|.|+ |-+|+.+++.|+..|-.++..+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 3566778999995 779999999999985335777774
No 191
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.52 E-value=0.16 Score=46.59 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.2
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
|.|||+|.+|+-++-.|+..|..+++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987689999974
No 192
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.51 E-value=0.28 Score=46.14 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|+|||+|.+|..+++.|...|. .+.++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 369999999999999999999997 4677765
No 193
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.48 E-value=0.36 Score=45.71 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=59.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC--
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-- 101 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-- 101 (288)
...+|.|+|+|+-|+.+|..|+..|. ..++++..+ +++ .++.-++.+.+. ..|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~---------------~~~--~~~~~~~~in~~--~~N~~ 70 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLE---------------EIV--EGEKLSDIINTK--HENVK 70 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEec---------------ccc--cchHHHHHHHhc--CCCcc
Confidence 45689999999999999999999884 456666432 111 022222222211 112
Q ss_pred --CCceeeeeecCC--CCcchhhhccCcEEEEecCChhhHHHHHHHHH--hcCCCceEEEEeeecc
Q 023036 102 --PMVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR--KLSKRVAFYTVDCRDS 161 (288)
Q Consensus 102 --p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~--~~~~~ip~i~~~~~G~ 161 (288)
|.++. +..+ .....+.+++.|+||.+.-+...+..+.++.. ..+.+.++|. .+-|+
T Consensus 71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS-~aKGI 132 (365)
T PTZ00345 71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAIS-LTKGI 132 (365)
T ss_pred cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEE-EeCCc
Confidence 22221 1111 11124567889999999877666655555543 2223444443 34453
No 194
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.47 E-value=0.3 Score=47.31 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=27.0
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+|+||| +|++|..+++.|...|. .++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999996 58888753
No 195
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=94.46 E-value=0.27 Score=44.06 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=26.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~ 63 (288)
.+.+|.|||+|.+|+.+++.|...|. .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 34689999999999999999999873 23555544
No 196
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.45 E-value=0.16 Score=40.68 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=44.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
...+|.|||+|-+|..+++.|..+|.. +.-+- . |....++++.+.-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~-----------------------s--rs~~sa~~a~~~~~~~~~~~- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGVY-----------------------S--RSPASAERAAAFIGAGAILD- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEES-----------------------S--CHH-HHHHHHC--TT------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE-----------------------e--CCcccccccccccccccccc-
Confidence 456899999999999999999999953 33221 1 22234555555544432221
Q ss_pred ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC 144 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~ 144 (288)
..+.+..+|+|++++-+........+++
T Consensus 62 -------~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 -------LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred -------cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2356778999999985544444444444
No 197
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.40 E-value=0.47 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=29.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999996
No 198
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.40 E-value=0.074 Score=48.72 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=65.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~ 111 (288)
+|.|||+|.+|..++++|...|. .++++|.+.-....+. +. |...+....+.+++. ++++-+...+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~---g~~~~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG--------KL---GITARHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH--------HC---CCeecCCHHHHHHhCCCCCEEEEEecC
Confidence 69999999999999999999996 4888886432111111 01 211111112222221 23343433332
Q ss_pred C-C-CCcchh---hhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 112 D-L-SSLDGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 112 ~-~-~~~~~~---~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
. . .+...+ .++.=.+||+++ .++.....+.+.+.+ +++.|+++...|.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~ 123 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGG 123 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCC
Confidence 2 0 011111 133335777774 456667777888877 8888998777765
No 199
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.36 E-value=0.23 Score=44.52 Aligned_cols=90 Identities=10% Similarity=-0.027 Sum_probs=51.9
Q ss_pred CcEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
.+|.|+|+ |.+|..+++.+... ++.-..++|.+.-. . ... ....+..+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--------------~---~~~-------------~~~~i~~~ 51 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--------------L---VGQ-------------GALGVAIT 51 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--------------c---ccc-------------CCCCcccc
Confidence 37999999 99999999988763 55545556653211 0 000 00011110
Q ss_pred ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
+..++.++++|+||+++ ++.....+...|.+ +++|++.+ +.|
T Consensus 52 -----~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~--~G~~vvig-ttG 93 (257)
T PRK00048 52 -----DDLEAVLADADVLIDFT-TPEATLENLEFALE--HGKPLVIG-TTG 93 (257)
T ss_pred -----CCHHHhccCCCEEEECC-CHHHHHHHHHHHHH--cCCCEEEE-CCC
Confidence 11233445678888776 34444667777777 78888844 444
No 200
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.35 E-value=0.24 Score=47.17 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=52.4
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM 103 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~------i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~ 103 (288)
.+|.|+|+ |.+|+.+|-.|+..|+-. ++|+|- |+ .+.|++..+--|+..- |.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~---~~~~a~g~a~DL~d~a~~~ 104 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ER---SKEALEGVAMELEDSLYPL 104 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------Cc---cchhhhHHHHHHHHhhhhh
Confidence 48999999 999999999999999854 666654 22 4445666666666554 43
Q ss_pred c-eeeeeecCCCCcchhhhccCcEEEEecC
Q 023036 104 V-RVSVEKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 104 v-~v~~~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
. .+.... .+.+.+++.|+||.+..
T Consensus 105 ~~~v~i~~-----~~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 105 LREVSIGI-----DPYEVFEDADWALLIGA 129 (387)
T ss_pred cCceEEec-----CCHHHhCCCCEEEECCC
Confidence 2 222221 23577899999999864
No 201
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.33 E-value=0.48 Score=47.35 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=26.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..++.|+|.|+ |++|..+++.|+..|.. +++++.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~R 112 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVR 112 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 35667889985 79999999999999964 665543
No 202
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.31 E-value=0.25 Score=44.13 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=21.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV 55 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv 55 (288)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 203
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.28 E-value=0.55 Score=44.05 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=59.2
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh--CC-
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGV-------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NP- 102 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gv-------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l--Np- 102 (288)
+|.|+|+|+.|+.+|..|+..|. .+++++..+ +++ .+.. ..+.+++- |+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~--~~~~----~~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEI--EGRN----LTEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------ccc--CCHH----HHHHHHhcCCCcc
Confidence 58999999999999999999883 457776531 111 0111 12222221 21
Q ss_pred ---CceeeeeecCC--CCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036 103 ---MVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (288)
Q Consensus 103 ---~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~ 162 (288)
.++. +..+ .....+.+++.|+||.+.-+...+..+.++...++.+.++|. .+-|+.
T Consensus 60 ylpgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs-~tKGie 120 (342)
T TIGR03376 60 YLPGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAIS-CIKGLE 120 (342)
T ss_pred ccCCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE-EeCCcc
Confidence 1111 1111 112345678999999998776665555555433335566655 456643
No 204
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.27 E-value=0.4 Score=46.42 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|+|+|+|+.|..+|+.|...|. ++++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999996 58998863
No 205
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.27 E-value=0.092 Score=52.14 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8999864
No 206
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.27 E-value=0.37 Score=44.62 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=28.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD 62 (288)
|++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5688999999999999999999999974 54444
No 207
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.18 E-value=0.48 Score=44.90 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.7
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6799999 99999999999999995 59999864
No 208
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.12 E-value=0.084 Score=49.11 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=29.2
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEcCC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~------i~lvD~d 64 (288)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988865 9999873
No 209
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.08 E-value=0.39 Score=46.94 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+...-++.++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 33445677899999999999999999999998 7899885
No 210
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.06 E-value=0.4 Score=45.93 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=31.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~ 72 (288)
+|.|||+|-+|..+|.+|+..|. +++++|.+.-....+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhh
Confidence 69999999999999999999997 4889987544333343
No 211
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.05 E-value=0.43 Score=43.21 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=26.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d 64 (288)
+...+|.|||+|.+|..++++|... |+.-..++|.+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 3457899999999999999999863 54433355653
No 212
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=94.05 E-value=0.34 Score=43.69 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhC--CCeEEEEcCC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDDR 64 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~G--vg~i~lvD~d 64 (288)
+|.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 4444566654
No 213
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.04 E-value=0.39 Score=43.30 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=27.1
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~ 63 (288)
+|.|||+|.+|..+++.|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 5777775
No 214
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.03 E-value=0.14 Score=47.40 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=30.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~ 63 (288)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 3799999999999999999999999 9999996
No 215
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.95 E-value=0.15 Score=50.05 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=30.6
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++++|+|+||+|..+++.|+..|. +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 7888764
No 216
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.31 Score=43.05 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-g-glGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 456789999997 5 7999999999999975 777664
No 217
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.94 E-value=0.15 Score=45.79 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=26.7
Q ss_pred EEEEcC-chHHHHHHHHHHHhC--C-CeEEEEcC
Q 023036 34 ILVCGM-KGTVAEFCKNIVLAG--V-GSLTLMDD 63 (288)
Q Consensus 34 VlIiG~-gglGseiaknL~l~G--v-g~i~lvD~ 63 (288)
|.|||+ |.+|..++..|+..| . .+++|+|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 579999 899999999999998 4 68999985
No 218
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.34 Score=43.06 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 367889999996 7999999999999997 5777764
No 219
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.22 Score=43.70 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.6
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999995 6899999999999997 4777764
No 220
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.67 E-value=0.15 Score=47.31 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=28.8
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg------~i~lvD~ 63 (288)
.+|.|+|+ |.+|+.+|-.|+..|+- ++.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 99999999999999984 5999985
No 221
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.63 E-value=0.51 Score=45.42 Aligned_cols=35 Identities=11% Similarity=-0.101 Sum_probs=30.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
-.+|.|||+|-+|..+|.+|+..|. +++.+|.+.-
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHH
Confidence 3679999999999999999999994 5888886443
No 222
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.62 E-value=0.2 Score=43.59 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=29.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++.+++|.|+ |++|..+++.|...|. ++.++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 8999999999999996 5888875
No 223
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.62 E-value=0.24 Score=43.15 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999995 68999999999999976 8888763
No 224
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.42 Score=42.22 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|+++.++|.|+ +++|.++++.|+..|.. +.+++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r 40 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGR 40 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 56789999996 58999999999999975 777765
No 225
>PLN00106 malate dehydrogenase
Probab=93.57 E-value=0.19 Score=46.74 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.5
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~ 65 (288)
...+|+|+|+ |.+|+.++-.|+..|. +.+.|+|-..
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4579999999 9999999999998887 5799999744
No 226
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.55 E-value=0.31 Score=44.58 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=64.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
+|.+||+|-+|..++++|...|. .++++|.+. ..+. +. +. |...+....+.++ ..++-+...+.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~-----~~---~~---g~~~~~s~~~~~~--~advVi~~v~~~ 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADE-----LL---SL---GAVSVETARQVTE--ASDIIFIMVPDT 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHH-----HH---Hc---CCeecCCHHHHHh--cCCEEEEeCCCh
Confidence 59999999999999999999996 578887643 1111 11 11 3222222222221 223333333322
Q ss_pred C--CCc---c---hhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 113 L--SSL---D---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 113 ~--~~~---~---~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
. .+. . ......-.+||+++ .++...+.+.+.+.+ +++.|+++-..|
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsG 121 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSG 121 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCC
Confidence 0 000 0 00112235666664 567778889999988 889999887666
No 227
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.56 Score=45.56 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+-+.+++|+|+|.|..|..+|+.|...|. .+++.|..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 46 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK 46 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34567899999999999999999999997 59998863
No 228
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.43 E-value=0.38 Score=43.44 Aligned_cols=79 Identities=28% Similarity=0.352 Sum_probs=58.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
++..+++|-|+ +|+|-|+|+.|+.-|.. +.|+-. -+.|-+.+++.|+... .+++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 56789999995 58999999999999966 666543 3457888999999888 78888
Q ss_pred eeecCCCCcc------hhhh---ccCcEEEEec
Q 023036 108 VEKGDLSSLD------GEFY---DKFDVVVVSC 131 (288)
Q Consensus 108 ~~~~~~~~~~------~~~~---~~~dvVi~~~ 131 (288)
+.+.++.+.+ .+.. -..|+.|.+.
T Consensus 60 vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 60 VIPADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred EEECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 8888876531 1111 1478887753
No 229
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.36 E-value=0.63 Score=42.40 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=26.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+|+|+|+|.+|..+++.|...|.. ..+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~ 34 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGR 34 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEee
Confidence 46899999999999999999999977 444443
No 230
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.34 E-value=0.22 Score=43.25 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 45678999999 57899999999999997 4777765
No 231
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.34 E-value=1.2 Score=40.11 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.0
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
+|+|.|. |.+|..+++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899995 7899999999999873 35777664
No 232
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.32 E-value=0.11 Score=48.53 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=33.8
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.|.+++|+|||+|-+|..++++|...|+.+|+++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4788999999999999999999999999999998653
No 233
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.32 E-value=0.23 Score=45.97 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=29.2
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCC
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR 64 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d 64 (288)
+|.|||+ |.+|+.+|-.|+..|+ .++.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999999997 579999974
No 234
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.31 E-value=0.41 Score=44.88 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=59.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
...+|+|+|+|.+|.-.+..+.+.|...+.++|.+ ..|.+.+++.... -.+...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g~----~~~~~~ 221 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGGA----DVVVNP 221 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCCC----eEeecC
Confidence 33489999999999999999999999999999862 1233333321110 000000
Q ss_pred ecC-CCCcchhhh--ccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036 110 KGD-LSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (288)
Q Consensus 110 ~~~-~~~~~~~~~--~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip 152 (288)
..+ ......+.- .++|+||.|+.+..+.....++++. .+.-
T Consensus 222 ~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~--gG~v 265 (350)
T COG1063 222 SEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRP--GGTV 265 (350)
T ss_pred ccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcC--CCEE
Confidence 000 000011122 3699999999988777777888877 5553
No 235
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.30 E-value=0.19 Score=46.54 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.3
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV 65 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~ 65 (288)
+|.|+|+ |.+|+.+|-.|+..|+ ..+.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999997 5799999743
No 236
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.29 E-value=0.27 Score=45.68 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~ 63 (288)
++-.+|.|+|+ |.+|+.++-.|+..|.. .+.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 44569999998 99999999999977764 7999997
No 237
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.31 Score=44.26 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 466789999995 7999999999999996 5777764
No 238
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.28 E-value=0.43 Score=38.80 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=43.1
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
++|+|.| .+|+|.++++.|+..|-..+.+++.. . ...+.+.+.+.+.+.+ .++....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~~--~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAPG--AKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHTT--SEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----cccccccccccccccc--ccccccc
Confidence 3688898 67999999999999998888888763 1 2345666666777555 4555555
Q ss_pred cCCC
Q 023036 111 GDLS 114 (288)
Q Consensus 111 ~~~~ 114 (288)
.++.
T Consensus 59 ~D~~ 62 (167)
T PF00106_consen 59 CDLS 62 (167)
T ss_dssp SETT
T ss_pred cccc
Confidence 4443
No 239
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.26 E-value=0.47 Score=47.36 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+.+|+|||+|..|...|..|.+.|.. ++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 567999999999999999999999985 9999964
No 240
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.37 Score=42.23 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999995 7999999999999997 4777654
No 241
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.22 E-value=0.26 Score=45.36 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=47.2
Q ss_pred EEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC----Cceeeeee
Q 023036 36 VCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MVRVSVEK 110 (288)
Q Consensus 36 IiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp----~v~v~~~~ 110 (288)
|||+|.+|+.+|-.|+..|+ ++|.|+|- -+.|++..+.-|+...+ .+++. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~--~ 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI----------------------NKDKAEGEAMDLQHAASFLPTPKKIR--S 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCChhhHHHHHHHHhhcccCCCeEEe--c
Confidence 68999999999999999998 46999985 22234444555555432 23333 1
Q ss_pred cCCCCcchhhhccCcEEEEecC
Q 023036 111 GDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 111 ~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.+.+.+++.|+||.+..
T Consensus 57 -----~~~~~~~daDivVitag 73 (299)
T TIGR01771 57 -----GDYSDCKDADLVVITAG 73 (299)
T ss_pred -----CCHHHHCCCCEEEECCC
Confidence 13567889999999864
No 242
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.21 E-value=0.44 Score=45.90 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|+|.|++|..+|+.|...|. ++++.|.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~ 36 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDG 36 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 457889999999999999999999996 4888885
No 243
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.20 E-value=1.1 Score=41.55 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+++++|+|.|+ |.+|+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999995 7799999999999995 47777653
No 244
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.34 Score=42.53 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 56789999996 68999999999999974 777654
No 245
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.18 E-value=0.48 Score=43.77 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.0
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.++.++|.|+ ||+|.++|+.|+..|.. +.+++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R 85 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVAR 85 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEEC
Confidence 4688999995 58999999999999974 888764
No 246
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.14 E-value=1.1 Score=34.52 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=23.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhC--CCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~G--vg~i~lvD~ 63 (288)
||.|||+|..|...+..+...+ +.-..++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~ 34 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP 34 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 7999999999999999999883 322335554
No 247
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.13 E-value=0.64 Score=45.89 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=28.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
-++|.|||+|..|+.||.+|+.+|.. ++++|.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~ 36 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDI 36 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeC
Confidence 35799999999999999999999965 889886
No 248
>PRK05442 malate dehydrogenase; Provisional
Probab=93.13 E-value=0.23 Score=46.31 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.5
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gv-g-----~i~lvD~ 63 (288)
.+|.|||+ |.+|+.+|-.|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 48999998 9999999999999887 4 6999985
No 249
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.12 E-value=0.56 Score=42.76 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=55.7
Q ss_pred cHHHHHHHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036 22 GADAQRRLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (288)
Q Consensus 22 G~~~q~~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l 100 (288)
+....+++.++.|+|-|++ |+|.++|+.|+..|.+-+.++ . -..|-+.+++.+++.
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva-r----------------------~~rrl~~v~~~l~~~ 59 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA-R----------------------RARRLERVAEELRKL 59 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee-h----------------------hhhhHHHHHHHHHHh
Confidence 3456789999999999976 899999999999998844442 2 112344555555555
Q ss_pred CCCceeeeeecCCCCcc--h-------hhhccCcEEEEe
Q 023036 101 NPMVRVSVEKGDLSSLD--G-------EFYDKFDVVVVS 130 (288)
Q Consensus 101 Np~v~v~~~~~~~~~~~--~-------~~~~~~dvVi~~ 130 (288)
-|.-++.+...++.+.. + ..+.+.|+.|..
T Consensus 60 ~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 60 GSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred CCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 44435666666655421 1 234566776653
No 250
>PRK06046 alanine dehydrogenase; Validated
Probab=93.12 E-value=0.49 Score=43.98 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=54.0
Q ss_pred hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
...+|.|+|+|..|...+.+|. ..++..+.++|. ...+++.+++.+++..+ +.+..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~ 184 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTV 184 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence 3578999999999999999998 568889999886 44566777777765433 33433
Q ss_pred eecCCCCcchhhhccCcEEEEecCCh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
.. ..++.+. .|+|+.|+-+.
T Consensus 185 ~~-----~~~~~l~-aDiVv~aTps~ 204 (326)
T PRK06046 185 AE-----DIEEACD-CDILVTTTPSR 204 (326)
T ss_pred eC-----CHHHHhh-CCEEEEecCCC
Confidence 32 1234555 89999998653
No 251
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.12 E-value=0.5 Score=46.42 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|+|.|+.|..+|+.|...|. +++..|.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 38 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADT 38 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcC
Confidence 457789999999999999999999997 5888886
No 252
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.08 E-value=0.55 Score=41.77 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee-ee-
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV-EK- 110 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~-~~- 110 (288)
++.+||+|-.|..++++|...|.. +..+|-+.-..+.+... |-.-+..+.+.++++-+--.|-. .+
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~~-----------ga~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKDE-----------GATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHhc-----------CCccccCHHHHHHhcCCCcEEEEEccC
Confidence 578999999999999999999965 77778655444444322 33334445666777765432222 11
Q ss_pred cCCCCc----chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc-----eEEEEEEcCCe
Q 023036 111 GDLSSL----DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS-----CGEIFVDLQNH 172 (288)
Q Consensus 111 ~~~~~~----~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~-----~G~v~~d~~~~ 172 (288)
.++.+. ...+++.=|+||+... +++...+-.+...+ +++-|+++++.|. .||.+..-|+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~lMiGG~~ 139 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCLMIGGDE 139 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceEEecCcH
Confidence 223221 2446778899999754 46665566666767 8999999999874 35666666643
No 253
>PLN02928 oxidoreductase family protein
Probab=93.00 E-value=0.1 Score=49.05 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.8
Q ss_pred ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|+...-..|.+++|+|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 149 w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 149 LGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred cccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 65322246899999999999999999999999997 5888876
No 254
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.19 Score=44.72 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.++.+++++|.|+ |++|.++++.|+..|.. +.++|.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r 41 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR 41 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 34678899999996 79999999999999965 788775
No 255
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.87 E-value=0.14 Score=47.87 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|||+|.+|.++|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 4778886
No 256
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.75 Score=44.39 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~ 36 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDA 36 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 457899999999999999999999996 4888885
No 257
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.83 E-value=0.63 Score=43.24 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|.|+|+|+-|+.+|+-|+..| ..++++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r 32 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGR 32 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEec
Confidence 57999999999999999999999 66777644
No 258
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.76 E-value=0.69 Score=42.81 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...+|+|.|+|++|...+..+...|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999888999988888775
No 259
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.76 E-value=0.17 Score=44.39 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.|+.++|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 5788999999999999999999999999889999864
No 260
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.69 E-value=0.11 Score=47.82 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=34.8
Q ss_pred ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
|.......|.+++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 54333457999999999999999999998877787 47888863
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.66 E-value=1.4 Score=41.27 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=52.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
..+|+|+|+||+|.-.++....+| .+++.+|. +..|.+.+. ++--+.-+....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~----~lGAd~~i~~~~ 219 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAK----KLGADHVINSSD 219 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHH----HhCCcEEEEcCC
Confidence 678999999999999999999999 77888875 444544443 333232233221
Q ss_pred cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
.+ .....-+.+|+||++.. ..+....-+.++.
T Consensus 220 ~~---~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~ 251 (339)
T COG1064 220 SD---ALEAVKEIADAIIDTVG-PATLEPSLKALRR 251 (339)
T ss_pred ch---hhHHhHhhCcEEEECCC-hhhHHHHHHHHhc
Confidence 11 11222223999999987 5544444455555
No 262
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.66 E-value=0.37 Score=42.27 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence 356788999996 78999999999999974 777765
No 263
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.61 E-value=0.35 Score=42.38 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999995 6899999999999996 4777765
No 264
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.57 E-value=0.49 Score=45.66 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=68.8
Q ss_pred cEEEEcCchHHH-HHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 33 ~VlIiG~gglGs-eiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
+|.|||+|+.-+ ++.+.|+. .++++|+++|-|. ++.+.. -...+.+.+.+.++.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~---------------v~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI---------------VGALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH---------------HHHHHHHHHHhhCCCeEEE
Confidence 799999999766 67777776 4678999999753 222211 1234455566777777776
Q ss_pred eeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
..+. -.+.+++.|+||.+.. ..+.+..-.++..+ +++ +-..+.|.-|.++
T Consensus 65 ~t~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~--~Gi--~gqET~G~GG~~~ 116 (419)
T cd05296 65 LTTD-----RREALEGADFVFTQIRVGGLEARALDERIPLK--HGV--IGQETTGAGGFAK 116 (419)
T ss_pred EeCC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHH--cCC--ccccCCCcchHHH
Confidence 6542 3677889999999864 33444444445555 544 3456776666443
No 265
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.56 E-value=0.65 Score=42.80 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhC-CCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAG-VGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~G-vg~i~lvD~ 63 (288)
+++++|+|.|+ |++|+.+++.|+..| ..+++++|.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r 38 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR 38 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45678999995 789999999999987 457888774
No 266
>PRK06194 hypothetical protein; Provisional
Probab=92.56 E-value=0.46 Score=42.50 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5567899998 57899999999999997 4888775
No 267
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.55 E-value=1.1 Score=43.56 Aligned_cols=105 Identities=10% Similarity=0.164 Sum_probs=61.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
-++.+|+|.|+ |-+|+.+++.|...|.. +..+|...... .+.+ ...+ .++ .++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~----------~~~~-----------~~~~--~~~--~~~ 170 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGR----------KENV-----------MHHF--SNP--NFE 170 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccc----------hhhh-----------hhhc--cCC--ceE
Confidence 35688999995 77999999999999964 66666421110 0000 0011 122 233
Q ss_pred eeecCCCCcchhhhccCcEEEEecC---------Chh--------hHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCC---------SVT--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~---------~~~--------~~~~i~~~~~~~~~~ip~i~~~~~G~~G~ 164 (288)
....++. +..+.++|+||-+.. ++. ....+-+.|++ .+++||.+++...+|.
T Consensus 171 ~i~~D~~---~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~--~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 171 LIRHDVV---EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGD 239 (442)
T ss_pred EEECCcc---ChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECChHHhCC
Confidence 3333332 223456888877542 111 12345678888 7789999888776653
No 268
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.48 Score=41.17 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.2
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999995 79999999999999975 666653
No 269
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.52 E-value=1.3 Score=33.45 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=49.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
.+.+|+-+|||. |......+-+..-.+++-+|. ...-.+.+.+++.+....-+++.+
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~----------------------s~~~~~~a~~~~~~~~~~~~i~~~ 57 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDI----------------------SPEMLEIARERAAEEGLSDRITFV 57 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEES----------------------SHHHHHHHHHHHHHTTTTTTEEEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCCeEEE
Confidence 367899999884 443333333334455888886 222345566666555545567777
Q ss_pred ecCCCCcchhhhccCcEEEEec
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSC 131 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~ 131 (288)
..++ ....+...+||+|++..
T Consensus 58 ~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 58 QGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp ESCC-HGGTTTSSCEEEEEECS
T ss_pred ECcc-ccCcccCCCCCEEEECC
Confidence 7776 34456667899999877
No 270
>PRK09186 flagellin modification protein A; Provisional
Probab=92.48 E-value=0.58 Score=40.93 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r 36 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADI 36 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEec
Confidence 45788999996 68999999999999964 666653
No 271
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.48 E-value=1.4 Score=40.87 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++.++|+|.|+ |=+|+.+++.|...|. +++.+|.
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 456789999995 7799999999999985 5777875
No 272
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.47 E-value=0.5 Score=41.12 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4678999999 46899999999999987 4777664
No 273
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=92.45 E-value=1.7 Score=40.13 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=25.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|+|.|+ |-+|+.+++.|...|=.+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36999997 789999999999763235777764
No 274
>PRK00811 spermidine synthase; Provisional
Probab=92.45 E-value=0.25 Score=45.01 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=31.7
Q ss_pred CHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 7 ~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++.+.-.|.+.+.-...-... ...+||++|+|+ |.-....|...++.+++.+|-
T Consensus 55 ~~~de~~Y~e~l~h~~~~~~~--~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEi 108 (283)
T PRK00811 55 TERDEFIYHEMMTHVPLFAHP--NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEI 108 (283)
T ss_pred cCcchhhHHHHhhhHHHhhCC--CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeC
Confidence 333445666654433322211 357899999984 333333333468999999986
No 275
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.45 E-value=0.15 Score=46.06 Aligned_cols=102 Identities=10% Similarity=0.128 Sum_probs=59.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEE---EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLT---LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~---lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
.||.|||||.+|..+++.|..-+...+. +.|.+.-....+. +..++-.-.+.+....|++-|++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------~~~~~~~~l~~ll~~~~DlVVE~ 69 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------GRVALLDGLPGLLAWRPDLVVEA 69 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------ccCcccCCHHHHhhcCCCEEEEC
Confidence 5899999999999999998654433233 3343221111111 11111111334445567766664
Q ss_pred eec-CCCCcchhhhc-cCcEEEEecC---ChhhHHHHHHHHHh
Q 023036 109 EKG-DLSSLDGEFYD-KFDVVVVSCC---SVTTKKLINEKCRK 146 (288)
Q Consensus 109 ~~~-~~~~~~~~~~~-~~dvVi~~~~---~~~~~~~i~~~~~~ 146 (288)
-.. -+.+..+..++ +.|+|+.+.. +.....++.+.|++
T Consensus 70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 322 22334556666 8999998864 45567788889988
No 276
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.43 E-value=0.77 Score=34.68 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhhhCCCceeeee--ecCCCCc---chhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 88 TIAEVCCDSLKDFNPMVRVSVE--KGDLSSL---DGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 88 ~Ka~~~~~~l~~lNp~v~v~~~--~~~~~~~---~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
.+.....+.+.+.+ .+...+ ....... -+..+++.|+||+.++ +......+.+.|++ .++|++.+.+.|
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk--~~ip~~~~~~~~ 85 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK--YGIPIIYSRSRG 85 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH--cCCcEEEECCCC
Confidence 45566677777765 355555 2222222 3556788899999876 56778899999999 999999988777
Q ss_pred ce
Q 023036 161 SC 162 (288)
Q Consensus 161 ~~ 162 (288)
..
T Consensus 86 ~~ 87 (97)
T PF10087_consen 86 VS 87 (97)
T ss_pred HH
Confidence 53
No 277
>PLN00016 RNA-binding protein; Provisional
Probab=92.40 E-value=0.46 Score=44.74 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred HHHHhcCcEEEE----cC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036 26 QRRLSKSHILVC----GM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF 100 (288)
Q Consensus 26 q~~L~~~~VlIi----G~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l 100 (288)
-....+.+|+|+ |+ |-+|+.+++.|...|. .+++++.+.-....+. ..+ -..+.++
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~-------------~~~-----~~~~~~l 107 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK-------------KEP-----FSRFSEL 107 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc-------------cCc-----hhhhhHh
Confidence 345566789999 75 6799999999999994 5888775432111000 000 0011111
Q ss_pred CCCceeeeeecCCCCcchhhh--ccCcEEEEecC-ChhhHHHHHHHHHhcCCCc-eEEEEeeecceEE
Q 023036 101 NPMVRVSVEKGDLSSLDGEFY--DKFDVVVVSCC-SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCGE 164 (288)
Q Consensus 101 Np~v~v~~~~~~~~~~~~~~~--~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G~ 164 (288)
.+. .++....++.+ ....+ .++|+||.+.. .......+-+.|++ .++ .||..++.|.+|.
T Consensus 108 ~~~-~v~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~--~gvkr~V~~SS~~vyg~ 171 (378)
T PLN00016 108 SSA-GVKTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKS--PGLKQFLFCSSAGVYKK 171 (378)
T ss_pred hhc-CceEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEEccHhhcCC
Confidence 110 13333333322 11222 46899998753 34445567778887 666 6888888877653
No 278
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.39 E-value=0.24 Score=45.28 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
.+|.+||+|..|..+|+||..+|. .++++|.+.-.....-... |-.-+...++...+. ++-+.....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~----------Ga~~a~s~~eaa~~a--DvVitmv~~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAA----------GATVAASPAEAAAEA--DVVITMLPD 67 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHc----------CCcccCCHHHHHHhC--CEEEEecCC
Confidence 479999999999999999999994 4888886433211111110 211111111222211 233333322
Q ss_pred CC--CC--c-chhh---hccCcEEEEe-cCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036 112 DL--SS--L-DGEF---YDKFDVVVVS-CCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (288)
Q Consensus 112 ~~--~~--~-~~~~---~~~~dvVi~~-~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~ 162 (288)
.. .+ . .... .+.=.++|++ +.++...+++.+...+ .+..|+++-..|..
T Consensus 68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~ 125 (286)
T COG2084 68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGV 125 (286)
T ss_pred HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCc
Confidence 11 00 0 0112 2334566665 4578888899999988 99999999988854
No 279
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.48 Score=41.60 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 367889999995 7899999999999997 4777765
No 280
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.32 E-value=0.5 Score=41.55 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.0
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++++++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46789999999 57899999999999997 5777765
No 281
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.30 E-value=0.41 Score=41.45 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEE-cC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM-DD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lv-D~ 63 (288)
|++++++|.|+ |++|.++++.|+..|.. +.++ +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI 38 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 66789999995 79999999999999976 4554 53
No 282
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.29 E-value=0.53 Score=45.68 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=32.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~ 67 (288)
+.+.+|+|+|+|..|..+++.|...| ..+++.|.....
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 34899999999999999999999999 559999975544
No 283
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.59 Score=41.17 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=26.4
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899996 7899999999999996 6887765
No 284
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=92.28 E-value=0.76 Score=43.93 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=36.7
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV 66 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~v 66 (288)
++|+..+|++.|+|+-|..+++.|..+|+. +|.++|..-+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 478999999999999999999999999998 9999998544
No 285
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.24 E-value=0.4 Score=41.58 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.5
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++.+++|.| .|++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r 39 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR 39 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 45678899998 55899999999999997 6888875
No 286
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.21 E-value=0.52 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999999 57999999999999996 4777654
No 287
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.15 E-value=0.66 Score=45.29 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+++++|+|+|+|-.|..+++.|...|.. +++.|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCC
Confidence 4678999999999999999999999977 7888863
No 288
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.14 E-value=0.26 Score=46.69 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=35.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCccccccc
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSAN 74 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~ 74 (288)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 45699999999999999999995 877899999877654443333
No 289
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.05 E-value=0.48 Score=44.04 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 467889999997 69999999999999975 777764
No 290
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.04 E-value=1 Score=42.88 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVS 107 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~ 107 (288)
.+++.|+|+|..+-.-++.+... ++.++.++|. ...|++..++++++..+.+ ++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~ 212 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE 212 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence 57899999999999999988763 5889999875 5568888899988876544 355
Q ss_pred eeecCCCCcchhhhccCcEEEEecCC
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
+.. ...+.+.+.|+|+.|+.+
T Consensus 213 ~~~-----s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 213 VVD-----SIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred EeC-----CHHHHHcCCCEEEEccCC
Confidence 432 246778899999988754
No 291
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.03 E-value=0.96 Score=43.69 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=28.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...|+|+|.|+.|..+|+.|...|. +++..|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence 5679999999999999999999997 4888885
No 292
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.82 Score=40.62 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.++.++|.|+ +|+|.++++.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999996 5899999999999997 4888775
No 293
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.00 E-value=0.65 Score=42.86 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=29.0
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~ 63 (288)
.+|.|+|+ |.+|..++..|+..|+. +++++|.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEEC
Confidence 37999998 99999999999999974 7999997
No 294
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.98 E-value=0.8 Score=45.10 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=30.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHH--hCCCeEEEEcCCc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVL--AGVGSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l--~Gvg~i~lvD~d~ 65 (288)
...+|+|||+|.-|.+.|..|+. .|. +++|+|...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 46789999999999999999997 564 599999765
No 295
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.97 E-value=0.6 Score=41.11 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.+++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 467889999995 58999999999999975 666654
No 296
>PLN03075 nicotianamine synthase; Provisional
Probab=91.92 E-value=2.9 Score=38.41 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=61.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHh---hhCCCce
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK---DFNPMVR 105 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~---~lNp~v~ 105 (288)
..++|+-||+|..|...+--++...- ++++=+|.+. + ..+.+++.+. .+.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--------------~--------ai~~Ar~~~~~~~gL~~r-- 178 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--------------S--------ANDVARRLVSSDPDLSKR-- 178 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--------------H--------HHHHHHHHhhhccCccCC--
Confidence 88999999999776554444443333 3566666421 1 1222233332 22233
Q ss_pred eeeeecCCCCcchhhhccCcEEEEecC----ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036 106 VSVEKGDLSSLDGEFYDKFDVVVVSCC----SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV 167 (288)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~dvVi~~~~----~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~ 167 (288)
++....+..+. .....+||+|++... ...-...+..+.+.+..+-.++.....|..+..|-
T Consensus 179 V~F~~~Da~~~-~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp 243 (296)
T PLN03075 179 MFFHTADVMDV-TESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYP 243 (296)
T ss_pred cEEEECchhhc-ccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCC
Confidence 44444444332 123568999998841 23334455555555444545665556888886653
No 297
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=91.90 E-value=0.86 Score=42.37 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=52.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
...++.|||+|..|...++.|.. ..+.++.++|. ...|++..++++++..+ ++..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~g~--~v~~ 182 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDYEV--PVRA 182 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhhCC--cEEE
Confidence 35789999999999987777654 34567777764 55577788888776532 3333
Q ss_pred eecCCCCcchhhhccCcEEEEecCC
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
.. ...+.+++.|+|+.|+.+
T Consensus 183 ~~-----~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 183 AT-----DPREAVEGCDILVTTTPS 202 (325)
T ss_pred eC-----CHHHHhccCCEEEEecCC
Confidence 21 245677899999998855
No 298
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.87 E-value=0.53 Score=41.01 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG 56 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg 56 (288)
|.+.+++|.|+ |++|.++++.|+..|..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 45678999985 68999999999999965
No 299
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.86 E-value=1.8 Score=40.19 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=25.9
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+|+|.| +|.+|+.+++.|+..|.. +.+++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 56899999 578999999999999964 555544
No 300
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.94 Score=39.87 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999997 6899999999999998 6888875
No 301
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.83 E-value=0.54 Score=43.74 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=36.2
Q ss_pred Hhhhhhhhh--ccHHH------HHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036 12 ALYDRQIRV--WGADA------QRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD 63 (288)
Q Consensus 12 ~rYdRqirl--~G~~~------q~~L~~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~ 63 (288)
..++|++|- |...+ ...++.+++.|+|.|.+|..+|+.+. |+| ++...|.
T Consensus 119 ~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~ 177 (324)
T COG1052 119 HEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDR 177 (324)
T ss_pred HHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECC
Confidence 345566665 44432 23688999999999999999999999 554 3555565
No 302
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.83 E-value=0.74 Score=48.95 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=54.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
..++|+|||+|..|...|..|++.|.. +||+|.. +.++...-+.--+. ...+.-.+.-.+.++++. +++...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~GG~l~yGIP~~-rlp~~vi~~~i~~l~~~G--v~f~~n 376 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDLGGVLRYGIPEF-RLPNQLIDDVVEKIKLLG--GRFVKN 376 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCCCceEEccCCCC-cChHHHHHHHHHHHHhhc--CeEEEe
Confidence 479999999999999999999999975 9999863 23333322211111 002222233334455543 333321
Q ss_pred ecCCCCcc-hhhhc-cCcEEEEecCC
Q 023036 110 KGDLSSLD-GEFYD-KFDVVVVSCCS 133 (288)
Q Consensus 110 ~~~~~~~~-~~~~~-~~dvVi~~~~~ 133 (288)
..--.+.. ++..+ +||.||+++..
T Consensus 377 ~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 377 FVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EEeccEEeHHHhccccCCEEEEeCCC
Confidence 11001112 33444 69999998764
No 303
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.80 E-value=1.3 Score=46.98 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~ 67 (288)
-..++|+|||+|..|-+.|..|++.|.. +|++|...++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence 3678999999999999999999999966 9999986554
No 304
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.79 E-value=0.7 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=28.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|.|||+|..|+.||.+|+.+|.. ++++|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 5799999999999999999999976 8898863
No 305
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.77 E-value=0.23 Score=42.04 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=26.9
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+|.|+|+|.+|.-+|-.++++|.. ++++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence 689999999999999999999966 99999743
No 306
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.64 E-value=0.53 Score=43.17 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=27.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 3567899998 47899999999999994 5777764
No 307
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.64 E-value=2 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=25.2
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|.| .|.+|..+++.|+..|.. ++++|.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHD-VVILDN 32 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCe-EEEEec
Confidence 699999 589999999999999964 776653
No 308
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.64 E-value=1.4 Score=40.29 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=29.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+..+|+|+|+|++|...+..+...|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5668999999999999998888889988877764
No 309
>PRK12746 short chain dehydrogenase; Provisional
Probab=91.60 E-value=0.42 Score=41.80 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q 023036 27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM 61 (288)
Q Consensus 27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lv 61 (288)
++|++++|+|.| .|++|+++++.|+..|.. +.+.
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~ 36 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIH 36 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 356788999999 568999999999999864 5443
No 310
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.56 E-value=0.76 Score=40.16 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 36788999999 56899999999999997 6888875
No 311
>PRK08589 short chain dehydrogenase; Validated
Probab=91.56 E-value=0.47 Score=42.33 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.+++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 467889999996 68999999999999964 777664
No 312
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.55 E-value=0.65 Score=45.04 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=68.5
Q ss_pred cEEEEcCchHHH-HHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH-HHHHHHhhhCCCcee
Q 023036 33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE-VCCDSLKDFNPMVRV 106 (288)
Q Consensus 33 ~VlIiG~gglGs-eiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~-~~~~~l~~lNp~v~v 106 (288)
+|.|||+|+.=+ ++++.|+. .++++|+|+|-|. +-+ ..+. .+.+...+.++.++|
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl----------------~~v~~l~~~~~~~~g~~~~v 62 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQ----------------EKVAEAVKILFKENYPEIKF 62 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHH----------------HHHHHHHHHHHHhhCCCeEE
Confidence 799999998633 66777764 3568999998532 111 1122 333444556666677
Q ss_pred eeeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI 165 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v 165 (288)
+..+. -.+.+++.|.||.+.. ..+.+..=.++..+ +++ +-..+.|.-|.+
T Consensus 63 ~~Ttd-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip~k--yGi--~gqET~G~GG~~ 114 (437)
T cd05298 63 VYTTD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIPLK--HGV--VGQETCGPGGFA 114 (437)
T ss_pred EEECC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHH--cCc--ceecCccHHHHH
Confidence 66542 3678899999999863 45666666678888 875 555777777643
No 313
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.50 E-value=1.2 Score=43.35 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.1
Q ss_pred hcCcEEEEcCchHHHH-HHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGse-iaknL~l~Gvg~i~lvD~ 63 (288)
+.++|+|+|+|+.|.. +|+.|...|.. +++.|.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 4578999999999999 79999999976 888886
No 314
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.44 E-value=0.91 Score=44.06 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=50.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHh-------CCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLA-------GVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN- 101 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~-------Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN- 101 (288)
.+|.|||+ |.+|+.+|-.|+.. |+- +|.++|. .+.|++..+-.|+..-
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~----------------------~~~~a~G~amDL~daa~ 158 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER----------------------SKQALEGVAMELEDSLY 158 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC----------------------CcchhHHHHHHHHHhhh
Confidence 58999999 99999999999988 542 4666653 3345555555555544
Q ss_pred CCc-eeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036 102 PMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 102 p~v-~v~~~~~~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
|.. ++.... .+.+.+++.|+||++...
T Consensus 159 ~~~~~v~i~~-----~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 159 PLLREVSIGI-----DPYEVFQDAEWALLIGAK 186 (444)
T ss_pred hhcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence 332 222222 235678999999998653
No 315
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.44 E-value=0.77 Score=40.63 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=29.3
Q ss_pred HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++++|.|.+ ++|.++++.|+..|. ++.++|.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r 42 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAAR 42 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 667899999955 799999999999998 6888775
No 316
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.42 E-value=1.4 Score=40.92 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=28.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+|+|+|+|++|..++..+-..|. +++++|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 5777775
No 317
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.39 E-value=1.4 Score=41.74 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+.+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35678999999 999999999998653345777886
No 318
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.37 E-value=0.76 Score=40.90 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 367788999995 7999999999999998 4888775
No 319
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.35 E-value=1.1 Score=45.69 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.0
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 578999999999999999999999976 9999864
No 320
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=91.31 E-value=0.81 Score=40.36 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
..|+..+|+|.|.|.+|..+++.|...|..-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998766688863
No 321
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.27 E-value=0.78 Score=41.09 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++.++|.|+||+|.++++.|. .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 467889999999999999996 784 5877775
No 322
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=91.26 E-value=5.3 Score=30.41 Aligned_cols=92 Identities=10% Similarity=0.093 Sum_probs=47.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+.+|+-+|+|. |.-....+...+-++++-+|. .....+.+.+.+++..- -+++...
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~~~~~~ 75 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIER----------------------NPEALRLIERNARRFGV-SNIVIVE 75 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcC----------------------CHHHHHHHHHHHHHhCC-CceEEEe
Confidence 56899999975 555444444434467888885 22344445555554421 1344443
Q ss_pred cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
.+...........||+|+...........+.+..+.
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~ 111 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR 111 (124)
T ss_pred ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence 333221122335899999865332323334434333
No 323
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.22 E-value=0.69 Score=40.06 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
+.+++|+|.|+ |++|..+++.|+..|.. +.++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~ 36 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNY 36 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEec
Confidence 45788999995 79999999999999975 44443
No 324
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.18 E-value=0.4 Score=44.27 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
-.+|.|||+|-.|+-||..++.+|+. +++.|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence 36899999999999999999997766 9999975
No 325
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=91.09 E-value=1.3 Score=45.39 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 45678999985 6899999999999997 5888774
No 326
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=91.02 E-value=1.2 Score=41.90 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeE--EEEcCCc
Q 023036 24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRV 65 (288)
Q Consensus 24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i--~lvD~d~ 65 (288)
+.++--.+.+|.|||+||-|+-++.+|...|+..+ ..+|.|.
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 34444456789999999999999999999998644 4467654
No 327
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=1.4 Score=43.23 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++|+|+|+|..|..+++.|...|. ++++.|.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~ 43 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD 43 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 57899999999999999999999995 5888885
No 328
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.99 E-value=0.43 Score=42.85 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++++|.| .|++|.++++.|+..|.. +.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 6678899998 668999999999999975 777764
No 329
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.99 E-value=0.37 Score=45.03 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=35.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl 71 (288)
.+.+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 899999888755443
No 330
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.43 Score=42.31 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 25 ~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.|.+|++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 688999999999996 6899999999999997 47777654
No 331
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.95 E-value=1.4 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 56789999995 6899999999999995 4777764
No 332
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.94 E-value=1.2 Score=39.03 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...+++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 44578899999995 68999999999999975 888774
No 333
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.91 E-value=1.6 Score=45.11 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|.|||+|..|+.||-.++.+|.. ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCC
Confidence 5799999999999999999999975 9999964
No 334
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.89 E-value=1.3 Score=45.09 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 457999999999999999999999975 9999864
No 335
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.88 E-value=0.66 Score=39.97 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.5
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTL 60 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~l 60 (288)
+..++|+|.| .|++|.++++.|...|.. +++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~ 35 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV 35 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence 4567899998 578999999999999985 444
No 336
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.86 E-value=0.23 Score=45.90 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|||.|.+|.++|+-+.-.|.. +..+|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence 479999999999999999999999877764 777776
No 337
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.82 E-value=0.67 Score=39.92 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
|.+++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678999995 78999999999999986 7777754
No 338
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.80 E-value=3 Score=38.10 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.9
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|.|+ |-+|+.+++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 6999995 7799999999999995 4666653
No 339
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.78 E-value=1.1 Score=42.12 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=52.7
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEE-EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~-lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+|.|+|+ |.+|.++++.|...-.-++. +++.+. .. |+.- .+..|.+.... .
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~~--------~~~~~~l~~~~-~ 54 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKPV--------SEVHPHLRGLV-D 54 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCCh--------HHhCccccccC-C
Confidence 7999998 88999999999966333444 556421 11 3321 11122211100 0
Q ss_pred cCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036 111 GDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (288)
Q Consensus 111 ~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~ 158 (288)
..+.+.+ .++.+++|+|+.|..+......+. .+.+ .++.+|+.++
T Consensus 55 ~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~-~~~~--~G~~VIDlS~ 100 (346)
T TIGR01850 55 LNLEPIDEEEIAEDADVVFLALPHGVSAELAP-ELLA--AGVKVIDLSA 100 (346)
T ss_pred ceeecCCHHHhhcCCCEEEECCCchHHHHHHH-HHHh--CCCEEEeCCh
Confidence 0111111 334458999999987665544444 4445 6677776443
No 340
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.76 E-value=1 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999996 8999999999999995 4777765
No 341
>PRK09330 cell division protein FtsZ; Validated
Probab=90.75 E-value=1 Score=42.95 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~ 65 (288)
....+|-|||+||-|+.++.+|...|+.. +..++.|.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 34678999999999999999999999763 44455544
No 342
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.75 E-value=1.8 Score=37.97 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.9
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r 34 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADI 34 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467999985 5899999999999996 5888875
No 343
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=90.73 E-value=0.41 Score=43.48 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=62.0
Q ss_pred EEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCC--
Q 023036 36 VCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL-- 113 (288)
Q Consensus 36 IiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~-- 113 (288)
|||+|.+|..++++|...|. +++++|.+.-....+.. . |...+....+.+++ .++-+...+...
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---g~~~~~s~~~~~~~--advVil~vp~~~~~ 66 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------A---GAQAAASPAEAAEG--ADRVITMLPAGQHV 66 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEeCCChHHH
Confidence 58999999999999999996 58999865322222211 1 22112122222221 233333333211
Q ss_pred CCc------chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 114 SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 114 ~~~------~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
... ....+..-.+||+++ .++...+.+.+.+.+ +++.|+++-..|.
T Consensus 67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg 119 (288)
T TIGR01692 67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGG 119 (288)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCC
Confidence 100 011223334666655 456677788999988 8899998766653
No 344
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.73 E-value=0.86 Score=39.93 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 56788999984 6899999999999996 5777664
No 345
>PRK05855 short chain dehydrogenase; Validated
Probab=90.72 E-value=0.68 Score=45.55 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=33.6
Q ss_pred cHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 22 GADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 22 G~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+...+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus 306 ~~~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 306 VGRPRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred hccccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 344456788899999995 79999999999999986 777764
No 346
>PLN02214 cinnamoyl-CoA reductase
Probab=90.69 E-value=3.7 Score=38.08 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=27.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
++.++|+|.|+ |.+|+.+++.|...|.. ++.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence 45678999997 78999999999999964 65554
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.64 E-value=2 Score=41.63 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
....+|+|||.|..|.+.|..|.+.|.. ++|+|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 3567899999999999999999999974 9999974
No 348
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=90.63 E-value=0.87 Score=41.77 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=78.8
Q ss_pred CCHHHHHhhhhhhhhc-cHHHHHHH--hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036 6 LTEQETALYDRQIRVW-GADAQRRL--SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN 82 (288)
Q Consensus 6 l~~~e~~rYdRqirl~-G~~~q~~L--~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di 82 (288)
+++...+.++|-++-- +...-.+. ...+|-.||+|-.|+.+++||+.+|.. +|++|-+.-....+... ...+
T Consensus 7 ~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~~----Ga~v 81 (327)
T KOG0409|consen 7 LAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQEA----GARV 81 (327)
T ss_pred cccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHHh----chhh
Confidence 4455556666654431 11111222 378999999999999999999999965 99999533222211100 1111
Q ss_pred ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-----chhhhc-----cCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036 83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-----DGEFYD-----KFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152 (288)
Q Consensus 83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-----~~~~~~-----~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip 152 (288)
..+=+|++.. .++-+.....+..-. ....++ +...|-.++-++...+.|.+..+. .+.-
T Consensus 82 ---~~sPaeVae~------sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~ 150 (327)
T KOG0409|consen 82 ---ANSPAEVAED------SDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGR 150 (327)
T ss_pred ---hCCHHHHHhh------cCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCe
Confidence 2222333321 133344333321100 011112 122244455678888899999988 8889
Q ss_pred EEEEeeecce
Q 023036 153 FYTVDCRDSC 162 (288)
Q Consensus 153 ~i~~~~~G~~ 162 (288)
|+++-..|..
T Consensus 151 ~vDAPVSGg~ 160 (327)
T KOG0409|consen 151 FVDAPVSGGV 160 (327)
T ss_pred EEeccccCCc
Confidence 9999888754
No 349
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.61 E-value=0.32 Score=46.23 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58999999999999999999999999986 777886
No 350
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.57 E-value=0.38 Score=44.14 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r 183 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGAR 183 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 568999999999999999999999997 7999886
No 351
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.54 E-value=5 Score=36.56 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=25.2
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
+++|+|.|+ |.+|+.+++.|+..|.. +.+++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence 468999994 78999999999999964 55543
No 352
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=90.48 E-value=0.72 Score=40.64 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=60.5
Q ss_pred cEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 33 HILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
+|.|||||++|..+++-+-.- ++.-+.+.|.+.-...++.+. + +.... ..|-++-+.+++-+..
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~-------~---~~~~~----s~ide~~~~~DlvVEa 67 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS-------V---GRRCV----SDIDELIAEVDLVVEA 67 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh-------c---CCCcc----ccHHHHhhccceeeee
Confidence 689999999999998865432 255555566533322222211 1 11111 1122222333333332
Q ss_pred cCC---CCcchhhh-ccCcEEEEecC---ChhhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036 111 GDL---SSLDGEFY-DKFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE 164 (288)
Q Consensus 111 ~~~---~~~~~~~~-~~~dvVi~~~~---~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~ 164 (288)
... .++....+ .++|++|.+.. +...+.++-+.++..+..+-+......|+.+.
T Consensus 68 AS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l 128 (255)
T COG1712 68 ASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDAL 128 (255)
T ss_pred CCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHH
Confidence 221 22333334 45999998875 34456667777776334444445555555443
No 353
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.47 E-value=2.1 Score=43.52 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
...+|+|||.|..|...|..|.+.|.. ++|+|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCC
Confidence 479999999999999999999999984 9999864
No 354
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=90.47 E-value=0.46 Score=45.06 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=30.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
++|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999875
No 355
>PRK15076 alpha-galactosidase; Provisional
Probab=90.46 E-value=1.6 Score=42.18 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=59.7
Q ss_pred CcEEEEcCchHHHHHHH--HHH-HhCC--CeEEEEcCCcCCcccccccccCCCCccccCCCcH-HHH-HHHHHhhhCCCc
Q 023036 32 SHILVCGMKGTVAEFCK--NIV-LAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI-AEV-CCDSLKDFNPMV 104 (288)
Q Consensus 32 ~~VlIiG~gglGseiak--nL~-l~Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K-a~~-~~~~l~~lNp~v 104 (288)
.+|.|||+|++|...+- .++ ..+. ..++|+|-+. .+.+ +.+ +.+.+..+.+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence 47999999998865544 554 2333 3799999521 1111 222 333344455555
Q ss_pred eeeeeecCCCCcchhhhccCcEEEEecCCh--hhHHHHH-HHHHhcCCCceEEEEeeecceEEEE
Q 023036 105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV--TTKKLIN-EKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~--~~~~~i~-~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
++...+. ..+.+++.|+||.+.... +.....+ ++..+ +++--=...+.|.-|.++
T Consensus 62 ~i~~ttD-----~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~ 119 (431)
T PRK15076 62 KITATTD-----RREALQGADYVINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMR 119 (431)
T ss_pred EEEEECC-----HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhh
Confidence 6654321 146678999999987542 3332233 45555 555311225666666544
No 356
>PLN02253 xanthoxin dehydrogenase
Probab=90.46 E-value=1.2 Score=39.73 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.+++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788899998 56899999999999996 4777764
No 357
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.46 E-value=1 Score=39.47 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 467889999995 689999999999999877888876
No 358
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.42 E-value=1 Score=41.81 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 466788999995 7899999999999996 4777764
No 359
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.41 E-value=0.33 Score=44.94 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=31.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|+|+|.+|.++|+-|.-.|+. +..+|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence 369999999999999999999999888874 666664
No 360
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.41 E-value=0.36 Score=45.05 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~ 177 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA 177 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46899999999999999999999999986 4888885
No 361
>PTZ00188 adrenodoxin reductase; Provisional
Probab=90.38 E-value=1.9 Score=42.41 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=55.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh--hCCCcee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNPMVRV 106 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~--lNp~v~v 106 (288)
...+|+|||+|..|.++|..|. ..|+. ++|+|....--.- -|. -+.++. .+.+.+.+.+.+ .++.+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGL-vR~-GVaPdh------~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGL-IRY-GVAPDH------IHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccE-EEE-eCCCCC------ccHHHHHHHHHHHHhhCCeEE
Confidence 4678999999999999999775 56754 9999975554322 221 122221 233344444433 2344443
Q ss_pred eeeecCC-CCc-chhhhccCcEEEEecCCh
Q 023036 107 SVEKGDL-SSL-DGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 107 ~~~~~~~-~~~-~~~~~~~~dvVi~~~~~~ 134 (288)
.. ...+ .+. .+++...||.||.++...
T Consensus 109 ~g-nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 31 1111 122 355567899999988653
No 362
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.38 E-value=2 Score=41.53 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=69.7
Q ss_pred cEEEEcCchH-HHHHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036 33 HILVCGMKGT-VAEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107 (288)
Q Consensus 33 ~VlIiG~ggl-GseiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~ 107 (288)
+|.|||+|+. +-++++.|+. ..+++|.++|-|.- -+. . -...+.+.+.+.++.++++
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl~--------------~-v~~l~~~~~~~~g~~~~v~ 63 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RLD--------------I-ILTIAKRYVEEVGADIKFE 63 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HHH--------------H-HHHHHHHHHHhhCCCeEEE
Confidence 7999999985 3367777773 34689999995321 110 0 1223444556677777777
Q ss_pred eeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
..+. -.+.++++|+||.+.. ..+.+..=.++..+ +++ +-..+.|..|.++
T Consensus 64 ~ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk--~G~--~gqeT~G~GG~~~ 115 (425)
T cd05197 64 KTMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLK--YGV--IGQETVGPGGTFS 115 (425)
T ss_pred EeCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHH--cCc--ccccccCcchhhh
Confidence 6643 3678899999999863 45666655567777 655 3367888777554
No 363
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.31 E-value=1.4 Score=38.02 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+.+|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 44678999985 78999999999999875 777664
No 364
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.29 E-value=0.89 Score=44.05 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.++++.+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 356778899999 57899999999999996 5888885
No 365
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.28 E-value=0.38 Score=44.82 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=31.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999997654
No 366
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.27 E-value=1.5 Score=39.06 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=26.8
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++++++|.| .|++|..+++.|+..|.. +.+++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r 35 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMR 35 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeC
Confidence 456789998 578999999999999965 666664
No 367
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.27 E-value=2.7 Score=39.25 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=19.3
Q ss_pred CcEEEEcCchHHHHHHHHHHH
Q 023036 32 SHILVCGMKGTVAEFCKNIVL 52 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l 52 (288)
-+|.|+|+|.+|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 368
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.19 E-value=1.9 Score=37.46 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.3
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r 33 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAAR 33 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeC
Confidence 4789998 57999999999999996 4777775
No 369
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=90.18 E-value=2.5 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.4
Q ss_pred EEEEc-CchHHHHHHHHHHHhCCCeE
Q 023036 34 ILVCG-MKGTVAEFCKNIVLAGVGSL 58 (288)
Q Consensus 34 VlIiG-~gglGseiaknL~l~Gvg~i 58 (288)
|+|+| .|-+|+++++.|...|..-+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~ 26 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI 26 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc
Confidence 78998 56699999999999997744
No 370
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.18 E-value=2.2 Score=40.56 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...+|+|.|. |.+|..+++.|...|.. +++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence 4568999995 78999999999999964 666654
No 371
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.18 E-value=0.37 Score=45.90 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 368899999999999999999999999986 777886
No 372
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.18 E-value=1.1 Score=39.10 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++++|.|++ |+|.++++.|+..|.. +.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence 567899999965 7999999999999975 777654
No 373
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.17 E-value=1.4 Score=38.04 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=28.5
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++++|.| .|++|.++++.|+..|.. +++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence 5678899999 578999999999999975 777763
No 374
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.17 E-value=3.8 Score=35.49 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=57.7
Q ss_pred EEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036 34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD 112 (288)
Q Consensus 34 VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~ 112 (288)
|+|+|+ |.+|..+++.|...|.. ++++=. . . .....+.++.. .+.+ ...+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R---------------~------~---~~~~~~~l~~~--g~~v--v~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVR---------------D------P---SSDRAQQLQAL--GAEV--VEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEES---------------S------S---HHHHHHHHHHT--TTEE--EES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEe---------------c------c---chhhhhhhhcc--cceE--eecc
Confidence 789996 88999999999997755 444211 1 1 11223444443 2333 3444
Q ss_pred CCCc--chhhhccCcEEEEecCC-----hhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036 113 LSSL--DGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRVAFYTVDCRD 160 (288)
Q Consensus 113 ~~~~--~~~~~~~~dvVi~~~~~-----~~~~~~i~~~~~~~~~~ip~i~~~~~G 160 (288)
+.+. ....++++|.|+++... .+....+-+.|.+ .+++.+.-..+|
T Consensus 52 ~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~--agVk~~v~ss~~ 104 (233)
T PF05368_consen 52 YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA--AGVKHFVPSSFG 104 (233)
T ss_dssp TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH--HT-SEEEESEES
T ss_pred cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc--cccceEEEEEec
Confidence 4432 35678999999998762 3345567788888 677766544433
No 375
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.13 E-value=1.4 Score=40.72 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=50.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
..++.|+|+|..+-.-++.+.. -++.++.++|. ...+++.+++++++ . .+.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 4689999999999988887754 56899999875 45588999999999 3 5666655
Q ss_pred ecCCCCcchhhhccCcEEEEecCChh
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSVT 135 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~~ 135 (288)
. ..++.+++.|+|+.|+.+..
T Consensus 184 ~-----~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 184 D-----SAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp S-----SHHHHHTTSSEEEE----SS
T ss_pred c-----chhhhcccCCEEEEccCCCC
Confidence 3 24677899999999886543
No 376
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.12 E-value=1.8 Score=37.28 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999996 5799999999999997 4777664
No 377
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=90.10 E-value=1.4 Score=38.30 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 467889999998 56799999999999997 67787763
No 378
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=90.07 E-value=2 Score=44.36 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
.+|.|||+|.+|..+++.|...|. ..++++|.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 579999999999999999999995 46888886
No 379
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=90.07 E-value=0.49 Score=43.08 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE 68 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~ 68 (288)
.|+|||+|-+|+.+|..|++.|. +++|+|...+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 799999985543
No 380
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.03 E-value=0.44 Score=46.06 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=29.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+|+|||.|-+|++.|-.|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35899999999999999999999976 899984
No 381
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=1.7 Score=41.98 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHhc-CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 28 RLSK-SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 28 ~L~~-~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
|+.+ ++|+|+|.|+.|...++.|...|- -.+++.|.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~ 40 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDT 40 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4455 789999999999999999999964 46888885
No 382
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.99 E-value=1.9 Score=40.04 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+|+|.|+|++|..++.-.-..|+.++..+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 678999999999999988888889887877765
No 383
>PRK13018 cell division protein FtsZ; Provisional
Probab=89.96 E-value=2.3 Score=40.42 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~ 65 (288)
..+.+|.|||+||.|+.++.+|...|+. .+..++.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 4568999999999999999999999976 456667665
No 384
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=89.96 E-value=2.5 Score=38.41 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=59.0
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
+|||.|+ |-+|+.+++.|...| +++.+|.... + ...|+ - ..+.+.+.+++..|++-+..-..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl---~--d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDF---S--NPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCC---C--CHHHHHHHHHhcCCCEEEECCcc
Confidence 6999996 779999999999888 5777775311 1 12344 2 23455566666666644432211
Q ss_pred C-CC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036 112 D-LS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG 163 (288)
Q Consensus 112 ~-~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G 163 (288)
. .. +..++... ..+......+.+.|++ .+++||..++...||
T Consensus 65 ~~~~~~~~~~~~~~--------~~N~~~~~~l~~aa~~--~g~~~v~~Ss~~Vy~ 109 (299)
T PRK09987 65 TAVDKAESEPEFAQ--------LLNATSVEAIAKAANE--VGAWVVHYSTDYVFP 109 (299)
T ss_pred CCcchhhcCHHHHH--------HHHHHHHHHHHHHHHH--cCCeEEEEccceEEC
Confidence 0 00 00001000 0123334567789988 778898877755443
No 385
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.94 E-value=1.1 Score=38.95 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 57889999996 6899999999999997 5777764
No 386
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=89.85 E-value=3.3 Score=38.24 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.6
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999995 679999999999999776666664
No 387
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.83 E-value=0.34 Score=44.89 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=30.8
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|..++|.|+|.|.+|.++|+-+.-.|+. +..+|.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~ 178 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH 178 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence 479999999999999999999999888875 555553
No 388
>PRK07024 short chain dehydrogenase; Provisional
Probab=89.78 E-value=1.4 Score=38.70 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=27.7
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789988 67899999999999997 58888753
No 389
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.76 E-value=1.3 Score=40.77 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=28.0
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|+|.|+ |.+|+++++.|+..|.. ++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence 35678999995 78999999999999975 666664
No 390
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.74 E-value=2.6 Score=37.89 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|+.++|.|.|.|.+|+.+++.|...|..-+.+.|.
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3578899999999999999999999999876668885
No 391
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=89.72 E-value=1.4 Score=39.74 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=25.8
Q ss_pred CcEEEEc-CchHHHHHHHHHHH-hCCCeEEEEc
Q 023036 32 SHILVCG-MKGTVAEFCKNIVL-AGVGSLTLMD 62 (288)
Q Consensus 32 ~~VlIiG-~gglGseiaknL~l-~Gvg~i~lvD 62 (288)
-+|.|+| +|.+|..+++.+.. .++.=+.++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3799999 59999999999985 6777666777
No 392
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.69 E-value=1.9 Score=37.34 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVAR 38 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 366789999995 6899999999999997 4777765
No 393
>PRK08643 acetoin reductase; Validated
Probab=89.65 E-value=1.5 Score=38.41 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788888 56899999999999997 4777764
No 394
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.63 E-value=2 Score=38.08 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM---KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~---gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.++.++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEecC
Confidence 56789999997 59999999999999974 777653
No 395
>PLN02858 fructose-bisphosphate aldolase
Probab=89.60 E-value=1.9 Score=47.81 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=67.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
..+|.+||+|.+|..+|+||+..|.. ++++|...-....+.. . |-..+...++..+. .++-+....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~a~~--advVi~~l~ 69 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFK-VQAFEISTPLMEKFCE--------L---GGHRCDSPAEAAKD--AAALVVVLS 69 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEEcC
Confidence 56899999999999999999999954 8888764222222111 1 22222222222221 122233322
Q ss_pred cCC--CCc---chhh---hccCcEEEEec-CChhhHHHHHHHHHhcCCC--ceEEEEeeecc
Q 023036 111 GDL--SSL---DGEF---YDKFDVVVVSC-CSVTTKKLINEKCRKLSKR--VAFYTVDCRDS 161 (288)
Q Consensus 111 ~~~--~~~---~~~~---~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~--ip~i~~~~~G~ 161 (288)
..- .+. .... +..=.+||+++ .++....++.+.+.+ ++ +.|+++-..|.
T Consensus 70 ~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~--~g~~~~~lDaPVsGg 129 (1378)
T PLN02858 70 HPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE--RKEQIFLVDAYVSKG 129 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh--cCCceEEEEccCcCC
Confidence 210 000 0111 22235666654 567888899999988 78 89999998885
No 396
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.52 E-value=2.8 Score=40.61 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=27.3
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+..+|+|.|. |-+|+.+++.|...|. +++.+|.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3468999995 6799999999999985 5777875
No 397
>PRK06196 oxidoreductase; Provisional
Probab=89.48 E-value=1.5 Score=40.10 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|.+++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R 58 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPAR 58 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 466788999996 68999999999999974 777764
No 398
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.47 E-value=0.5 Score=44.08 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=29.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
.|+|||.|.+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 5999998644
No 399
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.43 E-value=1.2 Score=41.31 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=31.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..++|||+|+|.+|--...-+--.|..++.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 4789999999999999999999999999999985
No 400
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.39 E-value=2.3 Score=43.78 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=28.8
Q ss_pred CcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d 64 (288)
++|.|||+|..|+.||-.++ .+|+. ++++|.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~ 342 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDIN 342 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCC
Confidence 67999999999999999999 88976 9999973
No 401
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=89.36 E-value=0.98 Score=39.64 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.+++|+|.| .|++|..+++.|+..|.. +.++|.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r 43 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI 43 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 36789999999 558999999999999975 666653
No 402
>PRK07589 ornithine cyclodeaminase; Validated
Probab=89.35 E-value=2.1 Score=40.21 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=54.4
Q ss_pred cCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
..+++|+|+|..+-.-++.+. .-.+.++.+++. ...|++..++++++. .+++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~~ 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAGP--GLRIVAC 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHhc--CCcEEEe
Confidence 578999999999988776554 346778888764 555788888888763 3444443
Q ss_pred ecCCCCcchhhhccCcEEEEecCCh
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCSV 134 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~~ 134 (288)
. ..++.+.+.|+|+.|+.+.
T Consensus 185 ~-----~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 185 R-----SVAEAVEGADIITTVTADK 204 (346)
T ss_pred C-----CHHHHHhcCCEEEEecCCC
Confidence 2 2467788999999988653
No 403
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.32 E-value=0.4 Score=40.50 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.4
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+++++|+|||.|..|.+++.+|+..| .+++++=.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R 198 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTR 198 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEec
Confidence 4688999999999999999999999999 88998743
No 404
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.25 E-value=0.35 Score=41.25 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=43.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccccc--ccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSAN--FLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE 109 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~--f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~ 109 (288)
.+|.|+|+|=+|...|-.|+..|.. ++-+|.+.-....+++. ++ .+..+ .+.+.+.++. -+..+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g~~p~-~E~~l-------~~ll~~~~~~----~~l~~t 67 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNGELPI-YEPGL-------DELLKENVSA----GRLRAT 67 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTTSSSS--CTTH-------HHHHHHHHHT----TSEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhccccc-cccch-------hhhhcccccc----ccchhh
Confidence 3799999999999999999999954 88888766544444433 33 22212 1223333321 123322
Q ss_pred ecCCCCcchhhhccCcEEEEecCC
Q 023036 110 KGDLSSLDGEFYDKFDVVVVSCCS 133 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~dvVi~~~~~ 133 (288)
. ...+.+++.|++|+|..+
T Consensus 68 ~-----~~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 68 T-----DIEEAIKDADVVFICVPT 86 (185)
T ss_dssp S-----EHHHHHHH-SEEEE----
T ss_pred h-----hhhhhhhccceEEEecCC
Confidence 1 123447789999998753
No 405
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.24 E-value=5.4 Score=35.02 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEE
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM 61 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lv 61 (288)
.....+|+|.|+ |.+|..+++.|+..|.. ++.+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 345678999995 88999999999998854 4443
No 406
>PRK05872 short chain dehydrogenase; Provisional
Probab=89.22 E-value=1.9 Score=39.09 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 367889999995 7899999999999997 5777764
No 407
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.17 E-value=0.69 Score=43.03 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=31.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE 68 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~ 68 (288)
.|+|||.|-+|+.+|..|+..|. +++|+|.+.+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~~ 36 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRAQ 36 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence 59999999999999999999996 599999877643
No 408
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=89.14 E-value=2.3 Score=40.55 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=55.3
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
+..+|+|+|+ |.+|.|+++.|......+++.+-.+ ... |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence 4559999997 5699999999988866667776431 111 321 111222211100
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~ 158 (288)
...+.+...+.+++.|+|+.+..+......+..+ + .+.++|+..+
T Consensus 91 -~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~--~g~~VIDlSs 135 (381)
T PLN02968 91 -LPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL--P--KDLKIVDLSA 135 (381)
T ss_pred -ccceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH--h--CCCEEEEcCc
Confidence 0111122233358899999998775555555543 3 4566665443
No 409
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.06 E-value=1.1 Score=39.18 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++.+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 367889999995 6899999999999997 58888763
No 410
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=89.06 E-value=2.8 Score=38.18 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=58.0
Q ss_pred cEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
+|||.|.+| +|.++++.|. +-..+.-.|...+ .-.-.+.+.+.+++..|++-|++-.-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-------------------Ditd~~~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAEL-------------------DITDPDAVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccc-------------------cccChHHHHHHHHhhCCCEEEECccc
Confidence 499999765 9999999998 4344555554332 22344567889999999876664321
Q ss_pred -CCC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036 112 -DLS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC 158 (288)
Q Consensus 112 -~~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~ 158 (288)
.++ +..++. .|. -|-.....+.+.|++ .+.++|..+|
T Consensus 61 t~vD~aE~~~e~--A~~------vNa~~~~~lA~aa~~--~ga~lVhiST 100 (281)
T COG1091 61 TAVDKAESEPEL--AFA------VNATGAENLARAAAE--VGARLVHIST 100 (281)
T ss_pred cccccccCCHHH--HHH------hHHHHHHHHHHHHHH--hCCeEEEeec
Confidence 111 111110 000 122334567789999 8999998775
No 411
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.04 E-value=6 Score=33.65 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=47.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhC-CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~G-vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
.+.+|+-+|+|. |.-.+..+.+.| -++++-+|. -....+.+.+++++.+-.-++..
T Consensus 40 ~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~----------------------~~~~~~~a~~n~~~~g~~~~v~~ 96 (198)
T PRK00377 40 KGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDK----------------------DEKAINLTRRNAEKFGVLNNIVL 96 (198)
T ss_pred CcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEEC----------------------CHHHHHHHHHHHHHhCCCCCeEE
Confidence 567899999976 443333322333 357888885 22344555666655441113333
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK 146 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~ 146 (288)
...+..+.....-..||.|+...........+...++.
T Consensus 97 ~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~ 134 (198)
T PRK00377 97 IKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEI 134 (198)
T ss_pred EEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHH
Confidence 33333221112124699999855332333344444443
No 412
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.03 E-value=0.59 Score=45.65 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.|..++|+|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5789999999999999999999999998 58888653
No 413
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.00 E-value=1.5 Score=38.92 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=24.9
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWR-LALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 6889884 78999999999999975 666654
No 414
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.99 E-value=3 Score=38.23 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=29.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...+|+|.|+|++|..++.-+-..|..++..+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3679999999999999999999999887777764
No 415
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.97 E-value=2.7 Score=40.99 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 457899999999999999999999975 9999864
No 416
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=88.96 E-value=3.1 Score=37.17 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=23.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~ 63 (288)
.+.+|+.+|+|+ |..+.......|. ++++-+|.
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~ 110 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM 110 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC
Confidence 567999999998 7655544444565 36888885
No 417
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.95 E-value=2.6 Score=41.11 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+.+|+|||.|..|.+.|..|.+.|.. ++|+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 467899999999999999999999975 8998864
No 418
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.94 E-value=3.3 Score=38.73 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=60.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccccccc----CCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFL----IPPDENVYGGKTIAEVCCDSLKDFNPMVR 105 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~----~~~~di~~~G~~Ka~~~~~~l~~lNp~v~ 105 (288)
...+|.|+|+||+|-....-...+|.++|.-+|...- .-++.+.|- ++..+. + -+.+.++++.+.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT~~vn~~~~---~-----~vv~~i~~~T~g-- 253 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGATHFVNPKEV---D-----DVVEAIVELTDG-- 253 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCceeecchhh---h-----hHHHHHHHhcCC--
Confidence 4578999999999999999999999999999986322 222233222 222211 1 133344443321
Q ss_pred eeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc
Q 023036 106 VSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL 147 (288)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~ 147 (288)
+.|.+|.|..+.+....--+.|++|
T Consensus 254 -----------------G~d~~~e~~G~~~~~~~al~~~~~~ 278 (366)
T COG1062 254 -----------------GADYAFECVGNVEVMRQALEATHRG 278 (366)
T ss_pred -----------------CCCEEEEccCCHHHHHHHHHHHhcC
Confidence 6889999999988877777788773
No 419
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=88.90 E-value=2.5 Score=40.60 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=27.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|.|+|+|+.|..+|+.|...|. +++..|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeC
Confidence 58999999999999999999997 4888885
No 420
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.90 E-value=3.2 Score=39.02 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=28.0
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++|+|.|. |-+|+.+++.|...|. .++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999996 7899999999999985 5888774
No 421
>PRK07074 short chain dehydrogenase; Provisional
Probab=88.90 E-value=2.1 Score=37.41 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.2
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467999996 6899999999999995 5888775
No 422
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.88 E-value=0.78 Score=41.66 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=57.7
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~ 111 (288)
||||+|+ |-+|+.+.+.|...|.. +.-++.. ++ .-...+.+.+.+.+..|++-|..-..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~----------------~~---dl~d~~~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYE-VIATSRS----------------DL---DLTDPEAVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT----------------CS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch----------------hc---CCCCHHHHHHHHHHhCCCeEecccee
Confidence 7999995 77999999999998855 3333432 12 22345677888888888765554311
Q ss_pred C-CC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036 112 D-LS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC 162 (288)
Q Consensus 112 ~-~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~ 162 (288)
. ++ +.+++..-. .+......+.++|.+ .++++|..++...|
T Consensus 62 ~~~~~ce~~p~~a~~--------iN~~~~~~la~~~~~--~~~~li~~STd~VF 105 (286)
T PF04321_consen 62 TNVDACEKNPEEAYA--------INVDATKNLAEACKE--RGARLIHISTDYVF 105 (286)
T ss_dssp --HHHHHHSHHHHHH--------HHTHHHHHHHHHHHH--CT-EEEEEEEGGGS
T ss_pred ecHHhhhhChhhhHH--------HhhHHHHHHHHHHHH--cCCcEEEeeccEEE
Confidence 0 00 001100000 123344577889999 99999998887654
No 423
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.84 E-value=0.53 Score=42.82 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=28.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4699999999999999999999987 899987543
No 424
>PRK09126 hypothetical protein; Provisional
Probab=88.81 E-value=0.54 Score=44.16 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
.+..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 457899999999999999999999986 899987543
No 425
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.79 E-value=1.6 Score=38.22 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++++|.| .|++|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 36788999999 468999999999999975 566554
No 426
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.77 E-value=1.4 Score=38.92 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++++++++|.|+ +++|.++++.|+..|.. +.++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 467788999995 58999999999999975 666653
No 427
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.76 E-value=1.3 Score=38.66 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
|.+++|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56788999995 6899999999999997 5888874
No 428
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.76 E-value=0.57 Score=45.73 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
......+|+|||+|..|...|+.|...|. ++++++.
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~ 41 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFER 41 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEec
Confidence 35667899999999999999999999997 5888885
No 429
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.73 E-value=2.4 Score=41.13 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=30.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 45789999999999999999999996 59999864
No 430
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.72 E-value=2.4 Score=43.96 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=40.7
Q ss_pred CCCCHHHHHhhhhhhhh----ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 4 EELTEQETALYDRQIRV----WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 4 ~~l~~~e~~rYdRqirl----~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+.++-...+||--.... +-......-...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 400 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~ 463 (752)
T PRK12778 400 EAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL 463 (752)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 34666666775533111 000111123567899999999999999999999975 9999973
No 431
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.70 E-value=8.2 Score=34.22 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=24.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+|+-+|||. |. ++..+++.|.++++-+|.
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDi 150 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDI 150 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEEC
Confidence 678999999997 64 444577788888888886
No 432
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=88.68 E-value=4.4 Score=41.28 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=30.8
Q ss_pred HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 23 ~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+-..-++.+|+|.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus 307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 34445567788999995 779999999999864235777775
No 433
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.67 E-value=2.3 Score=41.30 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.|++++|+|.|.|-+|+..|+.|...|..-+.+-|.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999999999999999999999999887777774
No 434
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.65 E-value=1.3 Score=40.30 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=51.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH-Hh---hhCCCcee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS-LK---DFNPMVRV 106 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~-l~---~lNp~v~v 106 (288)
++|++||+|++-....--....|.+ .++=+|.|. .|...+++ ++ .+.. .+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~-----------------------~A~~~a~~lv~~~~~L~~--~m 176 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP-----------------------EANELARRLVASDLGLSK--RM 176 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH-----------------------HHHHHHHHHHH---HH-S--SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH-----------------------HHHHHHHHHHhhcccccC--Ce
Confidence 5999999998776655555555654 344556421 12222222 22 2333 34
Q ss_pred eeeecCCCCcchhhhccCcEEEEecCCh----hhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036 107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV----TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF 166 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~----~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~ 166 (288)
..+..+..+.. .-+++||+|+.+..-. +-...+..+.+.++.+..++.-...|+.++.|
T Consensus 177 ~f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LY 239 (276)
T PF03059_consen 177 SFITADVLDVT-YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLY 239 (276)
T ss_dssp EEEES-GGGG--GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS
T ss_pred EEEecchhccc-cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcC
Confidence 55554443322 2367999999986432 44455666777666788888878888877544
No 435
>PLN02650 dihydroflavonol-4-reductase
Probab=88.62 E-value=6.6 Score=36.27 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=25.9
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++|+|.|+ |.+|+.+++.|+..|.. +++++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYT-VRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 568999995 78999999999999964 665543
No 436
>PRK06184 hypothetical protein; Provisional
Probab=88.60 E-value=0.59 Score=45.84 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=30.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
....|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 457899999999999999999999996 8999864
No 437
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=88.59 E-value=2.1 Score=39.43 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=27.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCc
Q 023036 33 HILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRV 65 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~ 65 (288)
+|.|||.||-|+.++..|.+.|+.. +..+|.|.
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~ 36 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDA 36 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 6899999999999999999999863 44556654
No 438
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.56 E-value=1.3 Score=38.84 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~ 42 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARS 42 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCC
Confidence 477889999995 69999999999999975 8888764
No 439
>PRK08264 short chain dehydrogenase; Validated
Probab=88.55 E-value=0.63 Score=40.26 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=31.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+.+++|+|.| .|++|.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 5678999999 57899999999999998678888754
No 440
>PRK06823 ornithine cyclodeaminase; Validated
Probab=88.53 E-value=2.7 Score=38.96 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=54.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
..+++.|+|+|..+-..++.+.. -.+.++.++|. ...|++..++.+++.. +.+..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~~--~~v~~ 182 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQALG--FAVNT 182 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhcC--CcEEE
Confidence 35889999999999888887653 35677777664 4557888888877653 33433
Q ss_pred eecCCCCcchhhhccCcEEEEecCChh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~ 135 (288)
. +...+...+.|+|+.|+.+.+
T Consensus 183 ~-----~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 183 T-----LDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred E-----CCHHHHhcCCCEEEEecCCCC
Confidence 3 224667889999999886543
No 441
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.51 E-value=0.63 Score=44.75 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=30.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+...+|+|+|+|.+|..+++.+...|. +++++|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~ 233 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEV 233 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 468899999999999999999999999 5888876
No 442
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.50 E-value=3.9 Score=37.71 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=25.7
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++|+|.|+ |.+|+.+++.|...|. +++.+|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 37899985 6799999999999996 4777764
No 443
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.50 E-value=1.7 Score=46.38 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~ 571 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFERE 571 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecc
Confidence 46789999999999999999999997 59999864
No 444
>PRK07236 hypothetical protein; Provisional
Probab=88.39 E-value=0.65 Score=43.76 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+...+|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4568899999999999999999999986 89998654
No 445
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=88.37 E-value=5.1 Score=36.24 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=50.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
.+|.+||+|.+|..++.-|..+|. ..|.+.|+ ...|.. .+.+..+-. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence 479999999999999999999994 46666554 111222 333333322 1
Q ss_pred eecCCCCcchhhhccCcEEEEecCChhhHHHHHHH
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEK 143 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~ 143 (288)
...+.+.....|+||++.-+......+.++
T Consensus 53 -----~~~~~~~~~~advv~LavKPq~~~~vl~~l 82 (266)
T COG0345 53 -----TTDNQEAVEEADVVFLAVKPQDLEEVLSKL 82 (266)
T ss_pred -----cCcHHHHHhhCCEEEEEeChHhHHHHHHHh
Confidence 122456777899999998775544444443
No 446
>PRK08324 short chain dehydrogenase; Validated
Probab=88.28 E-value=4.2 Score=41.66 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+.+++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 3457899999 58999999999999997 5888875
No 447
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.26 E-value=3.1 Score=38.90 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=28.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+|+|.|+|++|..++.-+...|..++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999988888899877877764
No 448
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=88.25 E-value=2.9 Score=40.41 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=26.7
Q ss_pred cEEEEcCchHHHH-HHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~gglGse-iaknL~l~Gvg~i~lvD~ 63 (288)
+|.++|.|+.|.. +|+.|...|.. ++..|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~-v~~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQ-VSGSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCe-EEEECC
Confidence 5889999999998 99999999976 788775
No 449
>PLN02775 Probable dihydrodipicolinate reductase
Probab=88.24 E-value=2.5 Score=38.62 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=57.2
Q ss_pred CcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCccccc------ccccCCCCccccCCCcHHHHHHHHHhhhCCC-
Q 023036 32 SHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS------ANFLIPPDENVYGGKTIAEVCCDSLKDFNPM- 103 (288)
Q Consensus 32 ~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~------r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~- 103 (288)
-+|.|.|+. -.|.++++.+...|..=+-.+|... ...|+. .-..+.++|+ . .+...+...+|+
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-~~~~~~~~~~g~~v~~~~~~dl-------~-~~l~~~~~~~~~~ 82 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-AGVGVTVEVCGVEVRLVGPSER-------E-AVLSSVKAEYPNL 82 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-ccccccceeccceeeeecCccH-------H-HHHHHhhccCCCE
Confidence 489999965 5999999999885543333333222 111111 0001111221 1 222222222676
Q ss_pred ceeeeeecCCCCcchhh--hccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 104 VRVSVEKGDLSSLDGEF--YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 104 v~v~~~~~~~~~~~~~~--~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
|-|+.........+..+ -.+..+||.|+.-.+. .+.++|.+ .++|++.+..+..
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e--~l~~~~~~--~~i~vv~apNfSi 138 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD--RLLKDVEE--SGVYAVIAPQMGK 138 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHhc--CCccEEEECcccH
Confidence 54544322111111111 1356677777653222 44566666 7788887777653
No 450
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.21 E-value=3.6 Score=39.58 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+.+++|+|+|.|+.|...++.|...|. +++..|..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 457789999999999999999999996 58888863
No 451
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=88.19 E-value=0.88 Score=39.94 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+.+++|+|.|+ |++|.++++.|+..|.. +.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence 56788999995 79999999999999974 77877543
No 452
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=88.18 E-value=2.5 Score=39.57 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=23.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeE-EEEc
Q 023036 32 SHILVCGM-KGTVAEFCKNIVLAGVGSL-TLMD 62 (288)
Q Consensus 32 ~~VlIiG~-gglGseiaknL~l~Gvg~i-~lvD 62 (288)
.+|+|+|+ |.+|.++++.|....--++ .+.|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 58999997 7799999999987633334 3344
No 453
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.08 E-value=3.8 Score=36.70 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=29.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
...+|+|+|+|++|..++..+...|+..+..+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5679999999999999999888899987877764
No 454
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=88.01 E-value=2.8 Score=36.96 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
.|++++|+|.|+ +|+|.++++.|+..|.. +.+++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~ 39 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTY 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEc
Confidence 477889999995 68999999999999975 65553
No 455
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=88.01 E-value=0.86 Score=45.38 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=31.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~ 67 (288)
...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999997 59999976543
No 456
>PRK06270 homoserine dehydrogenase; Provisional
Probab=87.99 E-value=4.6 Score=37.78 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHh
Q 023036 32 SHILVCGMKGTVAEFCKNIVLA 53 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~ 53 (288)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999765
No 457
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.94 E-value=0.64 Score=43.68 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=30.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
...|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence 45799999999999999999999975 99999764
No 458
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.87 E-value=0.54 Score=45.16 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|+|+|.+|.++|+.+...|+. +..+|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999988874 777775
No 459
>PRK13984 putative oxidoreductase; Provisional
Probab=87.86 E-value=3 Score=41.97 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=30.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
...+|+|||+|..|...|..|.+.|.. ++|+|...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 467899999999999999999999975 89997643
No 460
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=87.79 E-value=2.7 Score=39.15 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=66.7
Q ss_pred hcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
.+++|||-|++| +|+.|+|.|...|-.-...+.+ + +..|-......|....+ +...
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~---------------~------~~~k~~~~L~~l~~a~~--~l~l 61 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRD---------------P------EDEKKTEHLRKLEGAKE--RLKL 61 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcC---------------c------chhhhHHHHHhcccCcc--cceE
Confidence 578999999877 9999999999999763333322 1 22222222233332222 2555
Q ss_pred eecCCCCcc--hhhhccCcEEEEecCChh--------h--------HHHHHHHHHhcCCC--ceEEEEeeecceEE
Q 023036 109 EKGDLSSLD--GEFYDKFDVVVVSCCSVT--------T--------KKLINEKCRKLSKR--VAFYTVDCRDSCGE 164 (288)
Q Consensus 109 ~~~~~~~~~--~~~~~~~dvVi~~~~~~~--------~--------~~~i~~~~~~~~~~--ip~i~~~~~G~~G~ 164 (288)
...++.+.. +.-++++|.|+-+..+.. . ..-+-+.|.+ .. .++|.+.+..-..+
T Consensus 62 ~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~--~~sVkrvV~TSS~aAv~~ 135 (327)
T KOG1502|consen 62 FKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKK--TKSVKRVVYTSSTAAVRY 135 (327)
T ss_pred EeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhc--cCCcceEEEeccHHHhcc
Confidence 566665432 566889999987654311 1 1245568877 54 67887777654443
No 461
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.77 E-value=3.1 Score=38.54 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=27.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~ 63 (288)
..+|+|+|+|++|.-++..+.. .|..+++++|.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~ 197 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK 197 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 6789999999999998888775 57677888875
No 462
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.77 E-value=0.78 Score=43.54 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=32.6
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~ 65 (288)
|++.+|+|||.|..|..+|..|.+.|. ++|+|+|...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 356789999999999999999999987 4899998754
No 463
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.76 E-value=2.4 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=26.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q 023036 29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM 61 (288)
Q Consensus 29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lv 61 (288)
+.+++|+|.| .|++|.++++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 4567899999 468999999999999976 4444
No 464
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.71 E-value=2.5 Score=41.15 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++|+|+|+|-.|..+++.|.. |. ++++.|.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~ 36 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDD 36 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECC
Confidence 36789999999999999999995 86 5899985
No 465
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.71 E-value=0.2 Score=44.71 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=34.4
Q ss_pred CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+++.++..|.+.+.-+..-... +.++|||+|.|+ |+-+-.-+-..++.+++++|-
T Consensus 54 ~~e~de~~y~e~l~h~~~~~~~--~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEi 108 (246)
T PF01564_consen 54 LSERDEFIYHEMLVHPPLLLHP--NPKRVLIIGGGD-GGTARELLKHPPVESITVVEI 108 (246)
T ss_dssp EETTTHHHHHHHHHHHHHHHSS--ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES
T ss_pred EEEechHHHHHHHhhhHhhcCC--CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEec
Confidence 4555667888877655554433 688999999765 333333333445899999985
No 466
>PRK07677 short chain dehydrogenase; Provisional
Probab=87.69 E-value=1.7 Score=37.97 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=27.3
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
+++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357899985 5799999999999998 68887753
No 467
>PRK13529 malate dehydrogenase; Provisional
Probab=87.68 E-value=0.55 Score=46.66 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=44.7
Q ss_pred HHhhhhhhhhccHHHH------------------HHHhcCcEEEEcCchHHHHHHHHHHH----hCC------CeEEEEc
Q 023036 11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD 62 (288)
Q Consensus 11 ~~rYdRqirl~G~~~q------------------~~L~~~~VlIiG~gglGseiaknL~l----~Gv------g~i~lvD 62 (288)
.++|..++..|-.+-| ++|++.+|++.|+|+.|.-||+.|+. .|+ .+|.++|
T Consensus 257 L~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD 336 (563)
T PRK13529 257 LERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVD 336 (563)
T ss_pred HHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 4677777777755433 47889999999999999999999997 599 5899999
Q ss_pred CCc
Q 023036 63 DRV 65 (288)
Q Consensus 63 ~d~ 65 (288)
.+-
T Consensus 337 ~~G 339 (563)
T PRK13529 337 RQG 339 (563)
T ss_pred CCC
Confidence 853
No 468
>PLN02858 fructose-bisphosphate aldolase
Probab=87.68 E-value=3 Score=46.24 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=63.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
-.+|.+||+|.+|..+|++|+..|. .++++|...-....+.. . |-..+....+.++ +.++-+....
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~~~--~aDvVi~~V~ 389 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNF-SVCGYDVYKPTLVRFEN--------A---GGLAGNSPAEVAK--DVDVLVIMVA 389 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHh--cCCEEEEecC
Confidence 4679999999999999999999997 58888864321111111 0 2111111111111 1233333333
Q ss_pred cCCC--Cc---ch---hhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036 111 GDLS--SL---DG---EFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS 161 (288)
Q Consensus 111 ~~~~--~~---~~---~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~ 161 (288)
.... +. .. ..+..-.+||+++ .++...+.+.+.+.+..+++.|+++-..|.
T Consensus 390 ~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg 449 (1378)
T PLN02858 390 NEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGG 449 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCC
Confidence 2110 00 01 1122335666654 456677777777754335778888877664
No 469
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=87.67 E-value=3.2 Score=44.44 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
...+|+|||.|..|...|..|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 34689999999999999999999996 599999743
No 470
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=87.66 E-value=4.5 Score=39.07 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=31.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~ 72 (288)
.+|.|||+|-+|..+|.+|+. | ..++.+|.+.-..+.+.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C-CEEEEEeCCHHHHHHHH
Confidence 579999999999999999887 6 77999887554444443
No 471
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.64 E-value=0.64 Score=46.16 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|+
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 171 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP 171 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 36899999999999999999999999987 4777776
No 472
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.63 E-value=2.7 Score=31.53 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=26.5
Q ss_pred hcCcEEEEcCchHHHHHHH-HHHHhCCCeEEEEcC
Q 023036 30 SKSHILVCGMKGTVAEFCK-NIVLAGVGSLTLMDD 63 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiak-nL~l~Gvg~i~lvD~ 63 (288)
+..+|+|+|+|++|..++. .....|.+-..++|.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv 36 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV 36 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc
Confidence 3578999999999998874 345678787777775
No 473
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.62 E-value=2.3 Score=36.96 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.2
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4799999 57899999999999997 58888763
No 474
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=87.60 E-value=3.1 Score=38.23 Aligned_cols=78 Identities=8% Similarity=-0.042 Sum_probs=56.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~ 108 (288)
...++.|+|+|..|-.-++.+.. -++.++.|+|. ...|++..++++++.. .+++..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~ 172 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRP 172 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence 45789999999999988777763 46788888775 5557888888887643 234444
Q ss_pred eecCCCCcchhhhccCcEEEEecCChh
Q 023036 109 EKGDLSSLDGEFYDKFDVVVVSCCSVT 135 (288)
Q Consensus 109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~ 135 (288)
.. ..++...+.|+|+.++.+.+
T Consensus 173 ~~-----~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 173 VD-----NAEAALRDADTITSITNSDT 194 (301)
T ss_pred eC-----CHHHHHhcCCEEEEecCCCC
Confidence 32 24677889999999886543
No 475
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.58 E-value=2.7 Score=37.88 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcC
Q 023036 10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD 63 (288)
Q Consensus 10 e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~ 63 (288)
+.-.|.+-+.-.+.-.+. ...+||++|+|. |. +++.++.. ++.+++++|-
T Consensus 54 ~e~~y~e~l~~~~l~~~~--~p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~vei 104 (270)
T TIGR00417 54 DEFIYHEMIAHVPLFTHP--NPKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDI 104 (270)
T ss_pred hHHHHHHHhhhhHhhcCC--CCCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeC
Confidence 334555544333222222 345999999985 33 33444444 4788999886
No 476
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.57 E-value=0.68 Score=42.27 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+++++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46889999999999 99999999999998 8999975
No 477
>PRK08013 oxidoreductase; Provisional
Probab=87.55 E-value=0.68 Score=43.92 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
....|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 346899999999999999999999986 89999654
No 478
>PRK12743 oxidoreductase; Provisional
Probab=87.54 E-value=2.5 Score=37.04 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=24.9
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
.++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 457899885 58999999999999975 55553
No 479
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.51 E-value=1.8 Score=41.77 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=42.4
Q ss_pred cEEEEcCchHHHHHHH--HHHHh-CC--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHH----HHHHhhhCCC
Q 023036 33 HILVCGMKGTVAEFCK--NIVLA-GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC----CDSLKDFNPM 103 (288)
Q Consensus 33 ~VlIiG~gglGseiak--nL~l~-Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~----~~~l~~lNp~ 103 (288)
+|.|||+|++|...+- .++.. +. ..++|+|.+. .+++.. .+.+....+.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~----------------------e~l~~~~~~~~~~~~~~~~~ 59 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE----------------------ERLETVEILAKKIVEELGAP 59 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH----------------------HHHHHHHHHHHHHHHhcCCC
Confidence 6999999999887554 45421 22 4799998522 122222 2233333444
Q ss_pred ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036 104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132 (288)
Q Consensus 104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~ 132 (288)
.++...+. ..+.++++|+||.+..
T Consensus 60 ~~I~~ttD-----~~eal~~AD~Vi~ai~ 83 (423)
T cd05297 60 LKIEATTD-----RREALDGADFVINTIQ 83 (423)
T ss_pred eEEEEeCC-----HHHHhcCCCEEEEeeE
Confidence 44443221 2456789999998864
No 480
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=87.51 E-value=2.1 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=25.3
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEE
Q 023036 29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL 60 (288)
Q Consensus 29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~l 60 (288)
|+++.++|.|+ |++|..+++.|+..|.. +.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence 35678899985 79999999999999975 444
No 481
>PLN02494 adenosylhomocysteinase
Probab=87.46 E-value=0.84 Score=44.58 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
+.+++|+|+|+|.+|..+|+.+...|+ +++++|.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578999999999999999999999998 588887643
No 482
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.42 E-value=0.7 Score=38.60 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036 27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66 (288)
Q Consensus 27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v 66 (288)
-.|..++++|+|.|-+|.-+|+.|...|.. ++++|-|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChH
Confidence 357788999999999999999999999955 899887654
No 483
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.41 E-value=0.93 Score=46.73 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|.|||+|..|+.||-.++.+|+. ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCC
Confidence 4699999999999999999999976 9999974
No 484
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.40 E-value=2.7 Score=36.64 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036 31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD 62 (288)
Q Consensus 31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD 62 (288)
+++|+|.|+ |++|..+++.|+..|.. +.+.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 457999995 68999999999999965 55444
No 485
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=87.38 E-value=0.64 Score=46.14 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=44.5
Q ss_pred HHhhhhhhhhccHHHH------------------HHHhcCcEEEEcCchHHHHHHHHHH----HhCC------CeEEEEc
Q 023036 11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIV----LAGV------GSLTLMD 62 (288)
Q Consensus 11 ~~rYdRqirl~G~~~q------------------~~L~~~~VlIiG~gglGseiaknL~----l~Gv------g~i~lvD 62 (288)
.++|..++..|-.+-| ++|++.+|++.|+|+.|.-||+.|+ ..|+ .+|.++|
T Consensus 259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD 338 (559)
T PTZ00317 259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD 338 (559)
T ss_pred HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 4677767777755443 4788999999999999999999988 4799 7999999
Q ss_pred CCc
Q 023036 63 DRV 65 (288)
Q Consensus 63 ~d~ 65 (288)
.+-
T Consensus 339 ~~G 341 (559)
T PTZ00317 339 SKG 341 (559)
T ss_pred CCC
Confidence 753
No 486
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=87.34 E-value=0.94 Score=43.95 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=35.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCccccccc
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSAN 74 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~ 74 (288)
...|+|||.|-+|..+|..|++. | .+++|+|.+.+....-+||
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G-~~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPA-LDVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCC-CeEEEEeCCcccccccccc
Confidence 35799999999999999999998 6 4699999887755554554
No 487
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=87.31 E-value=0.85 Score=44.15 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=28.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
.+|+|||+|-.|+|+|..|++.|+. ++|++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence 3799999999999999999999976 8888843
No 488
>PRK07791 short chain dehydrogenase; Provisional
Probab=87.29 E-value=2.7 Score=37.84 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
.+.+++++|.|+ +|+|.++++.|+..|.. +.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeC
Confidence 467788999985 58999999999999974 777664
No 489
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=87.29 E-value=0.9 Score=45.17 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
++||+|||+|..|-..+|+|...|+. +++++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~ 32 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEK 32 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E-EEEEES
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC-CeEEec
Confidence 47999999999999999999999985 788875
No 490
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.28 E-value=0.84 Score=43.02 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=30.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
...|+|||.|..|..+|-.|++.|+. ++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~-v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS-VAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc-EEEEcCCC
Confidence 45799999999999999999999975 99999653
No 491
>PLN02366 spermidine synthase
Probab=87.25 E-value=1.4 Score=40.77 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCC
Q 023036 6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR 64 (288)
Q Consensus 6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d 64 (288)
+++.+.-.|.+.+.-..... .=...+||+||+|. |. +++.+++ .++.+++++|-|
T Consensus 69 ~~~~de~~Y~e~l~h~~l~~--~~~pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD 124 (308)
T PLN02366 69 LTERDECAYQEMITHLPLCS--IPNPKKVLVVGGGD-GG-VLREIARHSSVEQIDICEID 124 (308)
T ss_pred ecCccHHHHHHHHHHHHHhh--CCCCCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECC
Confidence 45555566754432222211 11367899999985 22 2344444 468899999853
No 492
>PRK06114 short chain dehydrogenase; Provisional
Probab=87.21 E-value=2.1 Score=37.54 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+++.++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999998 55899999999999997 5777765
No 493
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=87.21 E-value=6.6 Score=34.87 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.4
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
+|+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899995 8999999999999985 5777765
No 494
>PRK06185 hypothetical protein; Provisional
Probab=87.20 E-value=0.86 Score=43.09 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~ 65 (288)
....|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 456899999999999999999999985 99999753
No 495
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=87.20 E-value=0.74 Score=43.69 Aligned_cols=34 Identities=3% Similarity=0.117 Sum_probs=30.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036 30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64 (288)
Q Consensus 30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d 64 (288)
....|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 356899999999999999999999986 8999974
No 496
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=87.19 E-value=0.83 Score=37.58 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=53.3
Q ss_pred cEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH-HhhhCCCceeeeee
Q 023036 33 HILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS-LKDFNPMVRVSVEK 110 (288)
Q Consensus 33 ~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~-l~~lNp~v~v~~~~ 110 (288)
+|.|+|+|.+|..+++.+.. .++.-+.+.|. .+++.+. +++..+.+ -|+.+.+...+. --.+| ...+....
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a--~ll~~Ds~--hg~~~~~v~~~~~~l~i~-g~~i~~~~ 74 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLA--HLLKYDSV--HGRFPGEVEVDEDGLIVN-GKKIKVLA 74 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHH--HHhcccCC--CCCCCCcEEEeCCEEEEC-CEEEEEEe
Confidence 79999999999999999874 45655555553 3333332 24443333 166543221100 00111 11122211
Q ss_pred cC-CCCcchhhhccCcEEEEecCChhhHHHHHHHHH
Q 023036 111 GD-LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR 145 (288)
Q Consensus 111 ~~-~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~ 145 (288)
.. +.+. +--..+.|+||.|+..+..+.....+..
T Consensus 75 ~~~p~~~-~w~~~gvDiVie~tG~f~~~~~~~~hl~ 109 (149)
T smart00846 75 ERDPANL-PWKELGVDIVVECTGKFTTREKASAHLK 109 (149)
T ss_pred cCChHHC-cccccCCeEEEeccccccchHHHHHHHH
Confidence 11 1111 1011367999999877666665555543
No 497
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.18 E-value=8.2 Score=33.17 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred CcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036 32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110 (288)
Q Consensus 32 ~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~ 110 (288)
.+|.|||++| +|+++++-...-|-.--.|+-+ ..++... + .+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn------------------------------~~K~~~~-~--~~~i~q 47 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRN------------------------------ASKLAAR-Q--GVTILQ 47 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeC------------------------------hHhcccc-c--cceeec
Confidence 4789999664 9999999999888442223211 0111111 1 223334
Q ss_pred cCCCCcch--hhhccCcEEEEecCCh----h-----hHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcC
Q 023036 111 GDLSSLDG--EFYDKFDVVVVSCCSV----T-----TKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ 170 (288)
Q Consensus 111 ~~~~~~~~--~~~~~~dvVi~~~~~~----~-----~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~ 170 (288)
.++-+... +.+.++|+||.+..-. . ....+.+..+. .++|=+. ..|..|+.++|-|
T Consensus 48 ~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~--agv~Rll--VVGGAGSL~id~g 114 (211)
T COG2910 48 KDIFDLTSLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKG--AGVPRLL--VVGGAGSLEIDEG 114 (211)
T ss_pred ccccChhhhHhhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhh--cCCeeEE--EEcCccceEEcCC
Confidence 44444433 7788999999985322 1 12235555554 4555331 3567889998888
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=87.18 E-value=2.6 Score=36.95 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=26.9
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 023036 28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTL 60 (288)
Q Consensus 28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~l 60 (288)
.|++++|+|.| .|++|.++++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 35678999998 5689999999999999874444
No 499
>PLN02740 Alcohol dehydrogenase-like
Probab=87.17 E-value=4.2 Score=38.26 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=29.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036 31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63 (288)
Q Consensus 31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~ 63 (288)
..+|+|+|+|++|..++..+...|+.++..+|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 568999999999999999888999877888775
No 500
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=87.12 E-value=7 Score=35.65 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=23.8
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEc
Q 023036 33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMD 62 (288)
Q Consensus 33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD 62 (288)
+|+|.|+ |.+|+.+++.|...|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5889996 7899999999999983 3466554
Done!