BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023037
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/264 (91%), Positives = 255/264 (96%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
KG+VET+PE AL+GFAEVV MEPEKA+WGFKALKQTVK+YYRLGKYKEMM+AY EMLTYI
Sbjct: 34 KGMVETEPEEALSGFAEVVQMEPEKADWGFKALKQTVKIYYRLGKYKEMMEAYTEMLTYI 93
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
KSAVTRNYSEKCINNIMDFVSGSASQN LL+EFYQTTLKALEEAKNERLWFKTNLKLC
Sbjct: 94 KSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALEEAKNERLWFKTNLKLCN 153
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
IWFD+GEY RM+KILKELHKSCQ+EDGTDDQKKGSQLLEVYAIEIQ+YTETK+NKKLKQL
Sbjct: 154 IWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIYTETKDNKKLKQL 213
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y KALAIKSAIPHPRIMGIIRECGGKMHMAERQW +AATDFFEAFKNYDEAGNQRRIQCL
Sbjct: 214 YHKALAIKSAIPHPRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCL 273
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLMESEVNPFDGQEAKP
Sbjct: 274 KYLVLANMLMESEVNPFDGQEAKP 297
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/264 (64%), Positives = 218/264 (82%), Gaps = 2/264 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++LG Y EMM+ Y+++LTYI
Sbjct: 38 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLGNYPEMMNRYKQLLTYI 97
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL AL++AKN+RLWFKTN KL K
Sbjct: 98 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLDALKDAKNDRLWFKTNTKLGK 155
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 156 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 215
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 216 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 275
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLM+S +NPFD QEAKP
Sbjct: 276 KYLVLANMLMKSGINPFDSQEAKP 299
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 218/264 (82%), Gaps = 2/264 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLM+S +NPFD QEAKP
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKP 301
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 218/264 (82%), Gaps = 2/264 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLM+S +NPFD QEAKP
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKP 301
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 218/264 (82%), Gaps = 2/264 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLM+S +NPFD QEAKP
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKP 301
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/264 (63%), Positives = 218/264 (82%), Gaps = 2/264 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84
K L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L + EMM+ Y+++LTYI
Sbjct: 40 KALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYI 99
Query: 85 KSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144
+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+RLWFKTN KL K
Sbjct: 100 RSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGK 157
Query: 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204
++ + E+G++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK L
Sbjct: 158 LYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKAL 217
Query: 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264
Y+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR CL
Sbjct: 218 YEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 277
Query: 265 KYLVLANMLMESEVNPFDGQEAKP 288
KYLVLANMLM+S +NPFD QEAKP
Sbjct: 278 KYLVLANMLMKSGINPFDSQEAKP 301
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 213/265 (80%), Gaps = 1/265 (0%)
Query: 25 KGLVETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83
KGL++ A+ + +VV +E EK EWGFKALK+ KLY+R+G + M++++++ L Y
Sbjct: 41 KGLIDESIPDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNMLESFKKFLPY 100
Query: 84 IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLC 143
KS+ + NY EK IN+++D VS S + ++++ + TLK+L + KNER+WF+TNLKL
Sbjct: 101 TKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNERVWFRTNLKLA 160
Query: 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203
K+ F+ EYGR++KIL++LHKSC+ EDGTDDQKKGSQL+++YA+EIQMYTETKNNKKLK
Sbjct: 161 KLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMYTETKNNKKLKD 220
Query: 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263
LY+KAL IKSAIPHPRIMGIIRECGGKMHMAE++W A TDFFEAFKNYDEAGN RRIQC
Sbjct: 221 LYKKALEIKSAIPHPRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSRRIQC 280
Query: 264 LKYLVLANMLMESEVNPFDGQEAKP 288
LKYLVLA MLM S +NPFD EAKP
Sbjct: 281 LKYLVLACMLMLSTINPFDSTEAKP 305
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 216/265 (81%), Gaps = 3/265 (1%)
Query: 25 KGLVETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83
K L E +P+ ALA F +V+ +E EK EWGFKALKQ +K+ +RL Y EMM Y+++LTY
Sbjct: 40 KALKEEEPKAALASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTY 99
Query: 84 IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLC 143
IKSAVTRN+SEK IN+I+D++S S+N +LL+ FY+TTL AL +AKN+RLWFKTN KL
Sbjct: 100 IKSAVTRNHSEKSINSILDYIS--TSKNMALLQNFYETTLDALRDAKNDRLWFKTNTKLG 157
Query: 144 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203
K++FD ++ ++ KILK+LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT KNNKKLK
Sbjct: 158 KLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTVQKNNKKLKA 217
Query: 204 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263
LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNYDE+G+ RR C
Sbjct: 218 LYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 277
Query: 264 LKYLVLANMLMESEVNPFDGQEAKP 288
LKYLVLANMLM+S +NPFD QEAKP
Sbjct: 278 LKYLVLANMLMKSGINPFDSQEAKP 302
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 346 bits (888), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 206/260 (79%), Gaps = 2/260 (0%)
Query: 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90
+PE A+ F V A+E +K +WGFK LKQ +KL ++LG+Y + ++ YRE+LTY+KSAVTR
Sbjct: 47 NPEEAIDEFLGVPALEQDKGDWGFKGLKQAIKLEFKLGRYSDAVEHYRELLTYVKSAVTR 106
Query: 91 NYSEKCINNIMDFVS-GSASQN-FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD 148
NYSEK INN++D++ GS + + + EFY TL + + NERLW KTN+KL ++W +
Sbjct: 107 NYSEKSINNMLDYIEKGSDDEKAYQCMEEFYSLTLNSFQNTNNERLWLKTNIKLARLWLE 166
Query: 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208
EYG++SK ++ELH++CQREDG+DD KG+ LLE+YA+EIQMY ETKNNK+LK LYQ+A
Sbjct: 167 RREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEIQMYAETKNNKRLKALYQRA 226
Query: 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268
L ++SA+PHP+IMGIIRECGGKMHM+E W +A +DFFE+F+NYDEAG+ +RIQ LKYLV
Sbjct: 227 LRVRSAVPHPKIMGIIRECGGKMHMSEENWEEAQSDFFESFRNYDEAGSMQRIQVLKYLV 286
Query: 269 LANMLMESEVNPFDGQEAKP 288
L MLM+S++NPF QE KP
Sbjct: 287 LTTMLMKSDINPFHSQETKP 306
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 329 bits (844), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 206/257 (80%), Gaps = 5/257 (1%)
Query: 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94
A+ F +V+ +E EK EWGFKALKQ +K+ + + ++M++ YR++LTYIKSAVT+NYSE
Sbjct: 47 AIKSFEKVLELEGEKGEWGFKALKQMIKITFGQNRLEKMLEYYRQLLTYIKSAVTKNYSE 106
Query: 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGR 154
K IN I+D++S S+ LL+ FY+TTL AL++AKNERLWFKTN KL K++FD+ E+ +
Sbjct: 107 KSINAILDYIS--TSRQMDLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLHEFTK 164
Query: 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ---KALAI 211
+ KI+K+L SC+ E G +DQ+KG+QLLE+YA+EIQMYTE KNNK LK +Y+ +A+
Sbjct: 165 LEKIVKQLKVSCKNEQGEEDQRKGTQLLEIYALEIQMYTEQKNNKALKWVYELATQAIHT 224
Query: 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLAN 271
KSAIPHP I+G IRECGGKMH+ + ++ DA TDFFEAFKNYDE+G+ RR CLKYLVLAN
Sbjct: 225 KSAIPHPLILGTIRECGGKMHLRDGRFLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 284
Query: 272 MLMESEVNPFDGQEAKP 288
ML++S++NPFD QEAKP
Sbjct: 285 MLIKSDINPFDSQEAKP 301
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 321 bits (823), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 142/261 (54%), Positives = 196/261 (75%), Gaps = 2/261 (0%)
Query: 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89
+DPE AL F + +E EK +WGFKALKQ +KL ++L +Y+E + Y E+LTY+KSAVT
Sbjct: 44 SDPEEALQEFLSIPPLEQEKGDWGFKALKQAIKLEFKLKRYQEATEHYEELLTYVKSAVT 103
Query: 90 RNYSEKCINNIMDFVSG--SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147
RNYSEK I+N+++++ + + +FY TL+ + NERLW KTN+KL ++
Sbjct: 104 RNYSEKSIDNMLNYIEKGYDDPKAVQCIEKFYSLTLQCFQSTNNERLWLKTNIKLARLLL 163
Query: 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207
D +Y +++ L+ELH +C++ DGTDD KG+ LE+YA+EIQMY+ET+NN +LK LYQK
Sbjct: 164 DRKDYHAVARKLRELHNACRKSDGTDDPSKGTYSLEIYALEIQMYSETRNNNQLKVLYQK 223
Query: 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267
AL ++SA+PHP+I G+IRECGGKMHM+E W +A +DFFEAF+NYDEAG+ RRIQ LKYL
Sbjct: 224 ALKVRSAVPHPKIQGVIRECGGKMHMSEENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYL 283
Query: 268 VLANMLMESEVNPFDGQEAKP 288
+L MLM+S++NPFD QE KP
Sbjct: 284 LLTTMLMKSDINPFDSQEMKP 304
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 187/272 (68%), Gaps = 5/272 (1%)
Query: 20 CSILEKGLVETDPEGALAGFAEVV-AMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYR 78
C K L E +PE AL F +V E E+ EW FKALKQ K+ ++L KY +M+ +Y+
Sbjct: 34 CYYNSKSLKEENPESALTSFYSIVEKCEGEQNEWAFKALKQITKINFQLKKYDDMLQSYQ 93
Query: 79 EMLTYIK-SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137
+L Y ++T+NYSEK I NI+++ S+ +N L +FY T KAL+ NERL K
Sbjct: 94 RLLGYTNWLSITKNYSEKSIYNIVEY--ASSCENTEFLEKFYDVTTKALQNLNNERLMLK 151
Query: 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETK 196
+ + + Y + +L+++H+ E+ + DQ +G+ LLE+Y++EIQMY++ +
Sbjct: 152 VLMHVARFLLTQKNYHKFKYLLRQMHELLSDENNSVADQNRGTHLLELYSLEIQMYSDIE 211
Query: 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256
+NK+LK+LYQ +L +K+AIPHPRIMGIIRECGGKMHM E QW++A T+FFE+FK+YDEAG
Sbjct: 212 DNKRLKELYQSSLRVKTAIPHPRIMGIIRECGGKMHMQENQWSEAQTNFFESFKSYDEAG 271
Query: 257 NQRRIQCLKYLVLANMLMESEVNPFDGQEAKP 288
+ RI+ LKYLVLANML ESE+NPFD E +P
Sbjct: 272 SSDRIRVLKYLVLANMLSESEINPFDSPETQP 303
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 109/245 (44%), Gaps = 11/245 (4%)
Query: 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90
D A+ + +++ ++ + +A+ + KL+ ++GK ++ R + + +++
Sbjct: 15 DSNKAIQDYNKILTIQESPDDIKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFF-DKISK 73
Query: 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG 150
++K + N +D S + N + L EF + ++ ++ L + KL + F+
Sbjct: 74 PKTDKIVRNFIDIFS-TVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAK 132
Query: 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210
+Y L L +R D L+E+ +E ++ KN K + A
Sbjct: 133 DYANALSGLTTLLTEIKRLDD------KPLLVEIQLVESRIQHALKNIPKARAALTSART 186
Query: 211 IKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268
+ I P P++ I G +H E+ + A + FFE+++ YD + ++ LKY++
Sbjct: 187 NANTIYCP-PKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYML 245
Query: 269 LANML 273
L ++
Sbjct: 246 LCKIM 250
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 28/227 (12%)
Query: 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD-FVSGSASQNFSLLRE 117
Q +LY + GK KE+ D + ++ S++++ + K + +++D F+ A +
Sbjct: 52 QQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAGTGIEV--- 107
Query: 118 FYQTTLKALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQRED 170
Q +E AK E R + + +L +L ++FD Y +++L+EL K
Sbjct: 108 --QLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK------ 159
Query: 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECG 228
DD+ + L+EV +E + Y N K + A +AI P P++ G +
Sbjct: 160 -LDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PKVQGALDLQS 214
Query: 229 GKMHMA-ERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274
G +H A ER + A + F+EAF+ +D + + + LKY++L +++
Sbjct: 215 GILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML 261
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 40/278 (14%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE-RLW 135
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E R +
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 136 FKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+ L +L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
EAF+ YD + + I LKY++L +++ + P D Q
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQ 268
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 37/268 (13%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD ++ F +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLISTDRNASIDIFHSIVRRDVQEDDEEAVRVKEQSILELGSLLAKTGQAAELGGLLKF 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE-RLW 135
+ ++ S +++ + + + +++D + + Q L L+ +E AK E R +
Sbjct: 73 VRPFLIS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKAEKRTF 124
Query: 136 FKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+ L +L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLISLYFDTKRYQEALQLESQLLQELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + FF
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQAALDMQSGIIHAAEEKDWKTAYSYFF 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLM 274
EAF+ YD + R + LKY++L +++
Sbjct: 234 EAFEGYDSIDSPRAVTALKYMLLCKIML 261
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 40/278 (14%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE-RLW 135
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E R +
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 136 FKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+ L +L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
EAF+ YD + + I LKY++L +++ + P D Q
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQ 268
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 40/278 (14%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE-RLW 135
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E R +
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 136 FKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+ L +L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
EAF+ YD + + I LKY++L +++ + P D Q
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQ 268
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 40/278 (14%)
Query: 25 KGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTV----KLYYRLGKYKEMMDAYRE 79
+ L+ TD E ++ +V + E E + +Q++ L + G+ E+ +
Sbjct: 13 QSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKY 72
Query: 80 MLTYIKSAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE-RLW 135
+ ++ S +++ + + + +++D + + Q L L+ +E AK+E R +
Sbjct: 73 VRPFLNS-ISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEKRTF 124
Query: 136 FKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189
+ L +L ++FD Y S++L+EL K DD+ + L+EV +E
Sbjct: 125 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQLLES 174
Query: 190 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ Y N K + A +AI P P++ + G +H AE + W A + F+
Sbjct: 175 KTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYSYFY 233
Query: 247 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
EAF+ YD + + I LKY++L +++ + P D Q
Sbjct: 234 EAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQ 268
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 33/219 (15%)
Query: 80 MLTYIK---SAVTRNYSEKCINNIMD-FVSGSASQNFSLLREFYQTTLKALEEAKNE-RL 134
+L Y++ +++++ + + + +++D F+ A+ + + L+ +E AK+E R
Sbjct: 68 LLKYVRPFLNSISKAKAARLVRSLLDMFLDMEAATG-----QEVELCLECIEWAKSEKRT 122
Query: 135 WFKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188
+ + L +L ++FD Y S++L+EL K DD+ + L+E+ +E
Sbjct: 123 FLRQALEARLVSLYFDTKRYQEALQLGSQLLQELKK-------MDDK---ALLVELQLLE 172
Query: 189 IQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAATDF 245
+ Y N K + A +AI P P++ + G +H AE + W A + F
Sbjct: 173 SKTYHALSNLPKARAALTSARTTANAIYCP-PKLQAALDMQSGIIHAAEEKDWKTAYSYF 231
Query: 246 FEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
+EAF+ YD + R I LKY++L +++ S P D Q
Sbjct: 232 YEAFEGYDSIDSPRAITALKYMLLCKIMLNS---PEDVQ 267
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 37/221 (16%)
Query: 80 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNE- 132
+L Y++ +++++ + + + +++D + + Q L L+ +E AK E
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKAEK 121
Query: 133 RLWFKTNL--KLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 186
R + + L +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALQLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 187 IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAAT 243
+E + Y N K + A +AI P P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQAALDMQSGIIHAAEEKDWKTAYS 230
Query: 244 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQ 284
F+EAF+ D + + I LKY++L +++ + P D Q
Sbjct: 231 YFYEAFEGNDSIDSPKAITALKYMLLCKIMLNT---PEDVQ 268
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 78 REMLTYIK---SAVTRNYSEKCINNIMDFVS---GSASQNFSLLREFYQTTLKALEEAKN 131
R++LT ++ S + + + K + I+D V+ G+ +L +E + T K
Sbjct: 64 RKLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWT----RAEKR 119
Query: 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191
L + +L + + EY +L L K +R DD+ L+++ +E ++
Sbjct: 120 TFLRQRVEARLAALLMENKEYVEALALLSTLVKEVRR---LDDKL---LLVDIDLLESKL 173
Query: 192 YTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250
+ +N K K A +AI P G I G +H E+ + + FFEAF+
Sbjct: 174 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFE 233
Query: 251 NYDEAGNQRRIQCLKYLVLANMLM 274
+++ G+ R + LKY++L +++
Sbjct: 234 SFNALGDPRAVFSLKYMLLCKIMV 257
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 133 RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190
R + + L +L +++ D+ Y + + +L + ++ D D L+EV E +
Sbjct: 137 RTFLRQTLTARLVRLYNDLQRYTQALPLAADLIRELKKVDDKD------VLVEVELEESK 190
Query: 191 MYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMA-ERQWADAATDFFEA 248
Y N + + A +AI +PR+ + G +H A E+ + A + F+EA
Sbjct: 191 AYYNLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAADEKDFKTAFSYFYEA 250
Query: 249 FKNYDEAGNQ-RRIQCLKYLVLANMLME--SEVNPF 281
F+ YD + + LKY++L ++++ EVN
Sbjct: 251 FEGYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSL 286
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 131 NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188
N+R + + +L +L +++ D+ E+ K+ +EL K ++ + + L+EV E
Sbjct: 107 NKREFLRRSLQARLVRLYNDVREFTEGQKLGQELSKELKKLEDRE------LLIEVSIEE 160
Query: 189 IQMYTETKNNKKLKQ-LYQKALAIKSAIPHPRIMGIIRECGGKMHMAE-RQWADAATDFF 246
+ N K K L + SA P++ + G ++ AE R + + + F+
Sbjct: 161 SKCAFNLNNLSKAKTALLTAKTSSNSAFASPQLQAAVDMQSGVLYSAEERDYKTSFSYFY 220
Query: 247 EAFKNYDEAGNQ-RRIQCLKYLVLAN-MLMESEVNP 280
EAF+ Y G++ LKY++L ML E+E P
Sbjct: 221 EAFEGYGSIGDKVNATGALKYMILCKIMLNETEQIP 256
>sp|Q1JEI0|RUVX_STRPD Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M2 (strain MGAS10270) GN=MGAS10270_Spy1864
PE=3 SV=1
Length = 139
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q99XP4|RUVX_STRP1 Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M1 GN=SPy_2113 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|P0DF53|RUVX_STRPQ Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=SPs1795 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q48QX0|RUVX_STRPM Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M28 (strain MGAS6180) GN=M28_Spy1780 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|A2RGU5|RUVX_STRPG Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M5 (strain Manfredo) GN=SpyM51755 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q1J498|RUVX_STRPF Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M4 (strain MGAS10750) GN=MGAS10750_Spy1888
PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q1JJH9|RUVX_STRPC Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M12 (strain MGAS9429) GN=MGAS9429_Spy1807 PE=3
SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q1J9D0|RUVX_STRPB Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M12 (strain MGAS2096) GN=MGAS2096_Spy1829 PE=3
SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|P67495|RUVX_STRP8 Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_2171 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|Q5X9I3|RUVX_STRP6 Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=M6_Spy1795 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|P0DF52|RUVX_STRP3 Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=SpyM3_1797 PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|B5XJ01|RUVX_STRPZ Putative Holliday junction resolvase OS=Streptococcus pyogenes
serotype M49 (strain NZ131) GN=Spy49_1750c PE=3 SV=1
Length = 139
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64
G+ +DP G A E++ ++ EKAE+GF L++ VK Y
Sbjct: 14 GVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQY 52
>sp|C1DW63|DNLJ_SULAA DNA ligase OS=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM
15241 / OCM 825) GN=ligA PE=3 SV=1
Length = 701
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFY 119
TVK +Y+LG K + D YR IK+ + + EK +NN+ + S+N L R Y
Sbjct: 490 TVKKFYKLGLLKSIPDIYRLDFRIIKN--IQGFGEKSVNNLKQAI--EESKNRPLYRLIY 545
Query: 120 QTTLKALEEAKNERLWFKTN 139
++ + E + L N
Sbjct: 546 GLGIRYVGEVTAKTLASAVN 565
>sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270
OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1
Length = 913
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 29/184 (15%)
Query: 59 QTVKLYYRLGKYKEMMDAYREMLT---YIKSAVTRNYSEKCINNIMDFVSGSASQNFSLL 115
Q + + G E ++ YR +L + S+VT + K + +G SLL
Sbjct: 221 QIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQ-----AGRIGDAASLL 275
Query: 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175
RE A N L + + D+G++ + + EL C DG
Sbjct: 276 REMLSKGQAADSTVYN---------NLIRGYLDLGDFDKAVEFFDELKSKCTVYDGI--- 323
Query: 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE 235
V A ++ + E N+K+ + Y+ L K + HP ++ E K +
Sbjct: 324 --------VNATFMEYWFEKGNDKEAMESYRSLLDKKFRM-HPPTGNVLLEVFLKFGKKD 374
Query: 236 RQWA 239
WA
Sbjct: 375 EAWA 378
>sp|A7ENU3|CLU_SCLS1 Clustered mitochondria protein homolog OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=clu1 PE=3 SV=1
Length = 1311
Score = 31.6 bits (70), Expect = 6.1, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 123 LKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMS----KILKELHKSCQREDGTDDQKKG 178
L+ L+E + R WF+ +LK+C+ YG+ S +L +L ++ + D +
Sbjct: 1128 LQHLKEYHDSRTWFEASLKICE-----EVYGKHSINAATLLFQLAQALALDQ--DSKSAV 1180
Query: 179 SQLLEVYAIEI-QMYTETKNNKK----LKQLYQKALAI 211
+++ E Y I + ++ E KN K+ L+QL Q A++I
Sbjct: 1181 NRMRESYNIFLTELGAEDKNTKEAEKWLEQLTQNAVSI 1218
>sp|A6SFG0|CLU_BOTFB Clustered mitochondria protein homolog OS=Botryotinia fuckeliana
(strain B05.10) GN=clu1 PE=3 SV=1
Length = 1306
Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 123 LKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMS----KILKELHKSCQREDGTDDQKKG 178
L+ L+E + R WF+ +LK+C+ YG+ S +L +L ++ + D +
Sbjct: 1126 LQHLKEYHDSRTWFEASLKICE-----EVYGKHSINAATLLFQLAQALALDQ--DSKSAV 1178
Query: 179 SQLLEVYAIEI-QMYTETKNNKK----LKQLYQKALAI 211
+++ E Y I + ++ E KN K+ L+QL Q A++I
Sbjct: 1179 NRMRESYNIFLTELGAEDKNTKEAEKWLEQLTQNAVSI 1216
>sp|Q9XIL5|PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820
OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3
Length = 849
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 120
++ Y ++G + + M+ +REM +I A Y + I++ + E +
Sbjct: 433 IEAYSKVGDFAKAMEIFREMEKHIGGATMSGY-----HKIIEVLCKVQQV------ELVE 481
Query: 121 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167
T +K EE+ + L + +++ K++FD+G + ++ + + CQ
Sbjct: 482 TLMKEFEESGKKPL-LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQ 527
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,531,923
Number of Sequences: 539616
Number of extensions: 4069458
Number of successful extensions: 11542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 11491
Number of HSP's gapped (non-prelim): 57
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)